BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004938
         (722 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score = 1028 bits (2657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/708 (68%), Positives = 597/708 (84%), Gaps = 10/708 (1%)

Query: 17  TAISSCSSLTHMKQTHAQIL--KLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIF 74
           +A+SS +SLTH+KQ HAQIL  KL  S     SLL+KL+++S +L     SSL YALS+F
Sbjct: 28  SALSSATSLTHLKQVHAQILRSKLDRS----TSLLVKLVISSCALS----SSLDYALSVF 79

Query: 75  SQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL 134
           + IP P + + N+F+R +S S  P+  L V+ +M  +GL +DRFSFPP+LKA++R + L+
Sbjct: 80  NLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLV 139

Query: 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
           EG+++HGL  KLGF SDPFVQTGLV MY ACG+I +ARLMFDKM +RD+V WS+MIDGY 
Sbjct: 140 EGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYC 199

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           Q+GLF++ L LFEEMK  NVEPDEM+LS +LSAC RAGNLSYG+ +H+FI++NN+ +D H
Sbjct: 200 QSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPH 259

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           LQS L+TMYA+CG MD+A  LF+K+  KNLV STAMV+GYS+ GQ+E+AR +F+QMV+KD
Sbjct: 260 LQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKD 319

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           L+CWSAMISGYAE++ PQEAL LFNEMQ  G+KPD+VTMLSVI+ACAHLG LDQA+ IHL
Sbjct: 320 LVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHL 379

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           ++DKN FGG L +NNA+I+MYAKCGSLE AR +F++M R+NVISWT MI+AFA+HGDA +
Sbjct: 380 FVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGS 439

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           AL FF++M+DE+I+PNG+TF+GVLYACSHAGLV+EGR+IF SM NE+NI PK+ HYGCMV
Sbjct: 440 ALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMV 499

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DLFGRANLLREALELVE MP APNV+IWGSLMAACRVHGEIEL EFAAK+LL+LDPDHDG
Sbjct: 500 DLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDG 559

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
           A V LSNIYAK +RW+DVG++RK MK +GI KER CSR E+NNE++EFL ADRSHK  D+
Sbjct: 560 AHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADE 619

Query: 615 IYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIR 674
           IYEKL EV+S+LK  GY P+  S LVDLE+EEK+EV+LWHSEKLALCYGL+     SCIR
Sbjct: 620 IYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGSCIR 679

Query: 675 IVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           I+KNLRVCEDCH FIKL SKVY REIV+RDRTRFHHYKDGVCSCKDYW
Sbjct: 680 IIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/722 (61%), Positives = 581/722 (80%), Gaps = 4/722 (0%)

Query: 3   TLSQPTKPLTLPTSTAI-SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
            ++  T+ +  P+   + +SC +L H+KQ HAQIL+      + N LLLKL+L   +LP+
Sbjct: 2   AMAMSTRLIPSPSEKGLLASCKTLRHVKQIHAQILRSKMD--NSNLLLLKLVLCCCTLPS 59

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
            +PS+L YALS+FS IP PP+R SN+ +R  S    P++ L ++L +   G  +DRFSFP
Sbjct: 60  PSPSALDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFP 119

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGF-GSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
           P+LKA+++   L  G+++HGL +K GF  +DPF+Q+ L+ MY ACG+I+DAR +FDKMS+
Sbjct: 120 PLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSH 179

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           RD+V W++MIDGY QN  +D VL L+EEMK S  EPD ++L  +LSAC+ AGNLSYG+A+
Sbjct: 180 RDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAI 239

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H+FI DN   + +H+Q++L+ MYANCG M +A+ ++D++  K++VVSTAM+SGY++ G V
Sbjct: 240 HQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMV 299

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
           +DAR IFD+MVEKDL+CWSAMISGYAE+  P EAL+LFNEMQ   + PD++TMLSVISAC
Sbjct: 300 QDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISAC 359

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           A++G L QA+ IH Y DKN FG  L +NNA+IDMYAKCG+L  AREVFE M R+NVISW+
Sbjct: 360 ANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWS 419

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           SMINAFA+HGDA +A+  F++MK+++I+PNGVTFIGVLYACSHAGLV+EG++ F+SM NE
Sbjct: 420 SMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINE 479

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
           + I P+ EHYGCMVDL+ RAN LR+A+EL+ETMPF PNV+IWGSLM+AC+ HGEIEL EF
Sbjct: 480 HRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEF 539

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
           AA +LL+L+PDHDGALV+LSNIYAK+KRW DVG +RK MK +G+ KE+ACSRIE+NNEV+
Sbjct: 540 AATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVH 599

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
            F+ ADR HKQ+D+IY+KL+ V+S+LK  GY P     LVDLE+EEK+EV+LWHSEKLAL
Sbjct: 600 VFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLAL 659

Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
           CYGLI  +K+SCIRIVKNLR+CEDCH+F+KLVSKV+  EIV+RDRTRFHH+  G+CSC+D
Sbjct: 660 CYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRD 719

Query: 721 YW 722
           YW
Sbjct: 720 YW 721


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/698 (61%), Positives = 562/698 (80%), Gaps = 4/698 (0%)

Query: 27  HMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSN 86
           H+KQ HAQIL  + +  + N+LL KL L+     +++ SSL+YALS+FSQIP P +  SN
Sbjct: 31  HLKQIHAQILHSNTTPENTNTLLSKLALSI-CTLSSSSSSLHYALSVFSQIPNPHTHFSN 89

Query: 87  KFIRAISWSHRPKHALKVF--LKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
           + +R +S S  P+  + ++  L+ +N    +DRFSFP +LKA+++      G+++HGL +
Sbjct: 90  QLLRHLSRSSFPEKTIFLYHNLRAIN-AFALDRFSFPSLLKAVSKVSAFNHGLEIHGLAS 148

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           KLGF  DPF+QTGL+ MY +C +I+DARL+FDKM + D V W+++IDGY QNG +D+ L 
Sbjct: 149 KLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALR 208

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           LFE+M+ S+++PD ++L  +LSAC  AGNLSYG  +HEF+ DN  A+D+HLQ+ LI MYA
Sbjct: 209 LFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYA 268

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
           NCG MD+A+ ++D +  K+L+VSTAM+SGY++ G V+DAR IFDQM+E+DL+CWSAMISG
Sbjct: 269 NCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISG 328

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           YAE++ PQEALKLF+EM      PD++TMLSVISAC+H+G L QA  IH Y+D++ FG  
Sbjct: 329 YAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRA 388

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
           L VNNA+IDMYAKCG+L  AREVFE M R+NVISW+SMINAFA+HG+A +A+  F +MK+
Sbjct: 389 LSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKE 448

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
            +I+PNGVTFIGVLYAC HAGLV+EG ++F+SM NE+ I P  EHYGCMVDL+ RAN LR
Sbjct: 449 VNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLR 508

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
           +A+EL+ETMPFAPNV+IWGSLM+AC+VHGE EL EFAAK+LL+L+PDHDGALV+LSNIYA
Sbjct: 509 KAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYA 568

Query: 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVIS 624
           K+KRW DVG +RKSM  +GI KE+A SRIE+NN+V+ F+ ADR HKQ+D+IYEKL+EV+S
Sbjct: 569 KEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVS 628

Query: 625 ELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCED 684
           +LK  GY P     L+DLE+E+K+E++LWHSEKLA+CYGLIS + +SCIRIVKNLR+CED
Sbjct: 629 KLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRICED 688

Query: 685 CHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           CH+F+KLVSKVY  EIV+RDRTRFHH   G+CSC+DYW
Sbjct: 689 CHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  879 bits (2271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/729 (56%), Positives = 562/729 (77%), Gaps = 24/729 (3%)

Query: 11  LTLP---TSTA-------ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           +TLP    STA       +S C SL H+KQ HA IL+ +  +H  NS L           
Sbjct: 1   MTLPPPIASTAANTILEKLSFCKSLNHIKQLHAHILR-TVINHKLNSFLFN------LSV 53

Query: 61  TTTPSSLYYALSIFSQIPAPP-SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
           +++  +L YAL++FS IP+PP S V N F+R +S S  P+  +  + ++ + G  +D+FS
Sbjct: 54  SSSSINLSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFS 113

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           F PILKA+++   L EGM++HG+  K+    DPFV+TG + MY +CG+I  AR +FD+MS
Sbjct: 114 FLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMS 173

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
           +RD+V W+ MI+ Y + GL DE   LFEEMK SNV PDEM+L  I+SAC R GN+ Y  A
Sbjct: 174 HRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRA 233

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           ++EF+I+N+V +D HL + L+TMYA  GCMDMA+  F K+ ++NL VSTAMVSGYS+ G+
Sbjct: 234 IYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGR 293

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           ++DA++IFDQ  +KDL+CW+ MIS Y E+++PQEAL++F EM   G+KPD V+M SVISA
Sbjct: 294 LDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISA 353

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           CA+LG+LD+A+ +H  I  N    +L +NNA+I+MYAKCG L++ R+VFE+M RRNV+SW
Sbjct: 354 CANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSW 413

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           +SMINA ++HG+A +AL  F +MK E+++PN VTF+GVLY CSH+GLV+EG++IFASMT+
Sbjct: 414 SSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTD 473

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
           EYNI PK EHYGCMVDLFGRANLLREALE++E+MP A NVVIWGSLM+ACR+HGE+EL +
Sbjct: 474 EYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGK 533

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
           FAAK++L+L+PDHDGALVL+SNIYA+++RW+DV  +R+ M+E+ + KE+  SRI+ N + 
Sbjct: 534 FAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKS 593

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
           +EFL  D+ HKQ+++IY KL+EV+S+LK AGYVPD  S LVD+E+EEK++++LWHSEKLA
Sbjct: 594 HEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLA 653

Query: 660 LCYGLIS----SKKDSC--IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           LC+GL++     +KDSC  IRIVKNLRVCEDCH F KLVSKVY REI++RDRTRFH YK+
Sbjct: 654 LCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKN 713

Query: 714 GVCSCKDYW 722
           G+CSC+DYW
Sbjct: 714 GLCSCRDYW 722


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  866 bits (2237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/731 (56%), Positives = 547/731 (74%), Gaps = 18/731 (2%)

Query: 3   TLSQPTKPLTLPTSTAI----SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFS 58
           TL  P     +  +  I    S C SL H+KQ HA IL+   +H   +            
Sbjct: 2   TLPPPRPSFAVSAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSF-------LFNL 54

Query: 59  LPTTTPSSLYYALSIFSQI-PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117
             +++  +L YAL++FS I P P S V N  +R +S S  P+  +  + ++ + G   DR
Sbjct: 55  SFSSSSINLSYALNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDR 114

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
            SFPPILKA+++   L EGM++HG   K+   SDPFV+TGL+ MY ACG+I  AR +FD+
Sbjct: 115 ISFPPILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDE 174

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           MS RD+V W+ MI+ Y + GL DE   LFEEMK SNV PDEM+L  I+SAC R GN+ Y 
Sbjct: 175 MSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYN 234

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
            A+++F+I+N+V +D HL + L+TMYA  GCMDMA   F K+ ++NL VSTAMVSGYS+A
Sbjct: 235 RAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKA 294

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           G+++DAR+IFDQ   KDL+CW+ MIS YAE++HPQEAL++F EM   G+KPD VTMLSVI
Sbjct: 295 GRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVI 354

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
           SAC +LG LD+A+ +H Y   N     L ++NA+I+MYAKCG L++AR+VFE+M  RNV+
Sbjct: 355 SACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVV 414

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
           SW+SMINAFA+HG+A ++L  F +MK E+++PN VTF+GVLY CSH+GLV+EG++IFASM
Sbjct: 415 SWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASM 474

Query: 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537
           T+EYNI PK EHYGCMVDLFGRANLLREALE++E+MP APNVVIWGSLM+ACRVHGE+EL
Sbjct: 475 TDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELEL 534

Query: 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNN 597
            E AAK++L+L+PDHDGALVL+SNIYA++ RW  V  +R  M+++ + KE+  SRI++N 
Sbjct: 535 GELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNG 594

Query: 598 EVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEK 657
           + +EFL  D+ HKQ+++IY KL EV+S+LK AGYVPD  S LVD+E+EEK++++LWHSEK
Sbjct: 595 KSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEK 654

Query: 658 LALCYGLISSKKD----SC--IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHY 711
           LALC+GL++ +K+    SC  IRIVKNLRVCEDCH F KLVSKVY  EI++RDRTRFH Y
Sbjct: 655 LALCFGLMNKEKEEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRY 714

Query: 712 KDGVCSCKDYW 722
           KDG+CSC+DYW
Sbjct: 715 KDGLCSCRDYW 725


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/452 (76%), Positives = 398/452 (88%)

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
           MA+ LF K+  +NLVV TAM+SGYSR G+VEDARLIFDQM EKDL+CWSAMISGYAE++ 
Sbjct: 1   MAQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDK 60

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
           PQEAL LF+EMQV G+KPD+VT+LSVISACA LGVLD+A+ IH+Y+DKN  GG L VNNA
Sbjct: 61  PQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNA 120

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           +IDMYAKCG+L +AR VFE+M+ RNVISWTSMINAFAIHGDA NAL FF +MKDE+I PN
Sbjct: 121 LIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPN 180

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
           GVTF+GVLYACSHAGLV+EGR  FASMTNE+NI PK+EHYGCMVDLFGRANLLR+ALELV
Sbjct: 181 GVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELV 240

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
           ETMP APNVVIWGSLMAAC++HGE EL EFAAKQ+L+L+PDHDGALV LSNIYAKD+RWQ
Sbjct: 241 ETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQ 300

Query: 571 DVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAG 630
           DVGELR  MK+RGI KER CSRIE+NN+VYEF+ AD+ HKQ D+IYEKL+EV+ ELK  G
Sbjct: 301 DVGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVG 360

Query: 631 YVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIK 690
           Y P+  S LVD+E+E K+EV+LWHSEKLALCYGL+   K SCIRIVKNLRVCEDCH FIK
Sbjct: 361 YTPNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIK 420

Query: 691 LVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LVSKVY  EI++RDRTRFHHYK GVCSC DYW
Sbjct: 421 LVSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 149/286 (52%), Gaps = 45/286 (15%)

Query: 154 VQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN 213
           V T ++  Y   G++ DARL+FD+M  +D+V WS MI GY ++    E LNLF EM++  
Sbjct: 16  VLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFG 75

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           ++PD++ +  ++SAC+R G L   + +H ++  N +     + + LI MYA CG +  A+
Sbjct: 76  IKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAAR 135

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
           G+F+K+  +N++  T+M++ ++                          I G A N     
Sbjct: 136 GVFEKMQSRNVISWTSMINAFA--------------------------IHGDASN----- 164

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI-------HLYIDKNAFGGDLR 386
           ALK F +M+   +KP+ VT + V+ AC+H G++++ +R        H    K+   G   
Sbjct: 165 ALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYG--- 221

Query: 387 VNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD 431
               ++D++ +   L  A E+ E M    NV+ W S++ A  IHG+
Sbjct: 222 ---CMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAACQIHGE 264



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 151/369 (40%), Gaps = 51/369 (13%)

Query: 44  SQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALK 103
           S+N ++L  +++ +S           A  IF Q+        +  I   + S +P+ AL 
Sbjct: 11  SRNLVVLTAMISGYSRVGRVED----ARLIFDQMEEKDLVCWSAMISGYAESDKPQEALN 66

Query: 104 VFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYG 163
           +F +M   G+  D+ +   ++ A AR   L     +H    K G G    V   L+ MY 
Sbjct: 67  LFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYA 126

Query: 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSK 223
            CG +  AR +F+KM  R+++ W+ MI+ +  +G     L  F +MK  N++P+ +    
Sbjct: 127 KCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVG 186

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           +L ACS AG +  G      + +         +  +   + + GC               
Sbjct: 187 VLYACSHAGLVEEGRRTFASMTN---------EHNITPKHEHYGC--------------- 222

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQM-VEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
                 MV  + RA  + DA  + + M +  +++ W ++++  A   H +  L  F   Q
Sbjct: 223 ------MVDLFGRANLLRDALELVETMPLAPNVVIWGSLMA--ACQIHGENELGEFAAKQ 274

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR--VNNAIIDMYAKCGS 400
           V  ++PD            H G L Q   I+    +    G+LR  +    I     C  
Sbjct: 275 VLELEPD------------HDGALVQLSNIYAKDRRWQDVGELRNLMKQRGISKERGCSR 322

Query: 401 LESAREVFE 409
           +E   +V+E
Sbjct: 323 IELNNQVYE 331


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 318/716 (44%), Positives = 453/716 (63%), Gaps = 6/716 (0%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P+ P T P S  I +C S+  +KQ H+Q +         ++ ++   + +F         
Sbjct: 15  PSLPQTPPLSL-IKTCKSMAQLKQIHSQTICTG----LISNPIVPAQIIAFCCKHEL-GD 68

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           + YA  +F  +P P   V N  I+  S    P  A+ ++ +ML  G+  D +++P +LK 
Sbjct: 69  MEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKR 128

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
             R   +  G ++H    KLGF S+ FVQ  L+ +Y   G++  AR +FD+ S  D+V W
Sbjct: 129 FTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTW 188

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           +VMI GY ++  FDE + LF+EM+   V P  + L  +LSACS+  +L+ G+ VH ++ D
Sbjct: 189 NVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKD 248

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
             +     L++ LI MYA CG MD A G+FD +  ++++  TA+V+G++  GQV  AR  
Sbjct: 249 LKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNY 308

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           FD+M E+D + W+AMI GY + N  +E L LF EMQ   +KPD+ TM+S+++ACAHLG L
Sbjct: 309 FDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGAL 368

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           +  + I  YIDKN    D  V NA+IDMY  CG++E A  +F  M  R+ ISWT++I   
Sbjct: 369 ELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGL 428

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           AI+G    AL  F++M   SI P+ VT IGVL AC+H+G+VD+G++ FA MT ++ I P 
Sbjct: 429 AINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPN 488

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
             HYGCMVDL GRA  L+EA E+++ MP  PN ++WGSL+ ACRVH + E+AE AA+Q+L
Sbjct: 489 VAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQIL 548

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           +L+P++    VLL NIYA   RW+ + E+RK M +RGI K   CS IEMN  V+EF+  D
Sbjct: 549 ELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGD 608

Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS 666
           + H Q+ +IY KL+E+  +LK AGY PD     +D+ +EEK   +  HSEKLA+ +GLIS
Sbjct: 609 QVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLIS 668

Query: 667 SKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S     IRIVKNLR+C DCH   KLVSKVY RE+++RDRTRFHH++ G CSCKDYW
Sbjct: 669 SGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 313/722 (43%), Positives = 449/722 (62%), Gaps = 9/722 (1%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           + + S PT PL     + + +C S+  ++Q H Q +K      + N +L   ++T     
Sbjct: 11  LKSFSPPTHPLI----SLLETCESMDQLQQVHCQAIK---KGLNANPVLQNRVMTFCC-- 61

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
           T       YA  +F +IP P   + N  IR  S    P+  + ++L+ML  G+  DR++F
Sbjct: 62  THEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTF 121

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
           P + K   R   L  G Q+HG   K G   + FV T LV MY  CG++  AR +FD    
Sbjct: 122 PFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPK 181

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
            D++ W+++I  Y + G F+E   LF  M+   V P  + L  +LSACS+  +L  G+ V
Sbjct: 182 ADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKV 241

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H ++ +  V  +  L++ +I MYA+CG MD A G+F  +  ++++  T +VSG++  G++
Sbjct: 242 HSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEI 301

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
           + AR  FD+M EKD + W+AMI GY  +N  +EAL+LF  MQ   +KPD+ TM+SV++AC
Sbjct: 302 DVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTAC 361

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           AHLG L+  + I  YID+N    DL V NA+IDMY KCG ++ A  +F  M +R+  +WT
Sbjct: 362 AHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWT 421

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +MI   A++G    AL  F+ M   SI P+ +T+IGVL AC+H GLVD+GR+ F  MT++
Sbjct: 422 AMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQ 481

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
           + I P   HYGC+VDL  RA  L+EA E++E MP   N ++WG+L+A CRV+ E ++AE 
Sbjct: 482 HGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEM 541

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
             KQ+L+L+PD+    VLL NIYA  KRW D+ ELR+ M ++GI K   CS IEMN  V+
Sbjct: 542 VVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVH 601

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
           EF+  DRSH QT  I  KL+++  +LK AGY PDI    +D+ +E+K   +  HSEKLA+
Sbjct: 602 EFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAI 661

Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
            +GLI+S     IRI KNLR+C DCHN  KLVSKVY RE+++RDRTRFHH+K G+CSCKD
Sbjct: 662 AFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKD 721

Query: 721 YW 722
           YW
Sbjct: 722 YW 723


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 313/722 (43%), Positives = 449/722 (62%), Gaps = 9/722 (1%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           + + S PT PL     + + +C S+  ++Q H Q +K      + N +L   ++T     
Sbjct: 32  LKSFSPPTHPLI----SLLETCESMDQLQQVHCQAIK---KGLNANPVLQNRVMTFCC-- 82

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
           T       YA  +F +IP P   + N  IR  S    P+  + ++L+ML  G+  DR++F
Sbjct: 83  THEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTF 142

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
           P + K   R   L  G Q+HG   K G   + FV T LV MY  CG++  AR +FD    
Sbjct: 143 PFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPK 202

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
            D++ W+++I  Y + G F+E   LF  M+   V P  + L  +LSACS+  +L  G+ V
Sbjct: 203 ADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKV 262

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H ++ +  V  +  L++ +I MYA+CG MD A G+F  +  ++++  T +VSG++  G++
Sbjct: 263 HSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEI 322

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
           + AR  FD+M EKD + W+AMI GY  +N  +EAL+LF  MQ   +KPD+ TM+SV++AC
Sbjct: 323 DVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTAC 382

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           AHLG L+  + I  YID+N    DL V NA+IDMY KCG ++ A  +F  M +R+  +WT
Sbjct: 383 AHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWT 442

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +MI   A++G    AL  F+ M   SI P+ +T+IGVL AC+H GLVD+GR+ F  MT++
Sbjct: 443 AMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQ 502

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
           + I P   HYGC+VDL  RA  L+EA E++E MP   N ++WG+L+A CRV+ E ++AE 
Sbjct: 503 HGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEM 562

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
             KQ+L+L+PD+    VLL NIYA  KRW D+ ELR+ M ++GI K   CS IEMN  V+
Sbjct: 563 VVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVH 622

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
           EF+  DRSH QT  I  KL+++  +LK AGY PDI    +D+ +E+K   +  HSEKLA+
Sbjct: 623 EFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAI 682

Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
            +GLI+S     IRI KNLR+C DCHN  KLVSKVY RE+++RDRTRFHH+K G+CSCKD
Sbjct: 683 AFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKD 742

Query: 721 YW 722
           YW
Sbjct: 743 YW 744


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 311/722 (43%), Positives = 444/722 (61%), Gaps = 14/722 (1%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILK--LSHSHHSQNSLLLKLLLTSFSLPTTT 63
           Q + P T+P    I  C++  H+KQ HA +L+  L     S   L     L+S       
Sbjct: 26  QKSNPSTVPI--LIDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSS------- 76

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPP 122
           PSSL YA  +F QIP P     N  IRA + S +P   L VF++ML+E     + ++FP 
Sbjct: 77  PSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPF 136

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           ++KA      LL G  +HG+  K  FGSD F+   L+  Y + G +  A L+F K+  +D
Sbjct: 137 VIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKD 196

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           IV W+ MI G+ Q G  +E L LF+ MKM N  P+ + +  +LSAC++  +L +G    +
Sbjct: 197 IVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACD 256

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           +I  N + ++  L + ++ MY  CG ++ A+ LFDK+  K++V  T M+ GY++ G  + 
Sbjct: 257 YIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDA 316

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC-GMKPDKVTMLSVISACA 361
           AR +FD M  +D+  W+A+IS Y +N  P+EAL +F E+Q+    KP++VT+ S ++ACA
Sbjct: 317 ARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACA 376

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
            LG +D    IH+YI K     +  +  ++IDMY+KCG LE A EVF  + RR+V  W++
Sbjct: 377 QLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSA 436

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI   A+HG  R A+  F+KM++  + PN VTF  +L ACSH+GLVDEGR  F  M   Y
Sbjct: 437 MIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVY 496

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
            + P  +HY CMVD+ GRA  L EA+EL+E MP  P+  +WG+L+ ACR++G +ELAE A
Sbjct: 497 GVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMA 556

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
             +LL+ D ++ GA VLLSNIYAK  +W  V  LR+ MK  G+ KE  CS IE+N  ++E
Sbjct: 557 CSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHE 616

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL-WHSEKLAL 660
           FL  D SH  + +IY KL+E+++ +K  GYV D    L  +E+E  +E  L  HSEKLA+
Sbjct: 617 FLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAI 676

Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
            YGLI  +    IRIVKNLRVC DCH+  KL+SK+Y R+I++RDR RFHH+  G CSC D
Sbjct: 677 AYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMD 736

Query: 721 YW 722
           YW
Sbjct: 737 YW 738


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 308/715 (43%), Positives = 446/715 (62%), Gaps = 14/715 (1%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILK--LSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYAL 71
           PT + I  CS    +KQ HAQ+L+  L     S + L+    L+ F        SL YA 
Sbjct: 37  PTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFP-------SLDYAQ 89

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIARA 130
            +F QIP P     N  IRA + S  P  +L +FL+ML++     D+F+FP ++KA +  
Sbjct: 90  QVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASEL 149

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
           E L  G   HG+  K+  GSD F+   L+  Y  CG++     +F  +  RD+V W+ MI
Sbjct: 150 EELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMI 209

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
             + Q G  +E L LF+EM+  NV+P+ + +  +LSAC++  +  +G  VH +I  N + 
Sbjct: 210 TAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIG 269

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
               L + ++ MY  CG ++ AK LFDK+  K++V  T M+ GY++ G+ + A+ IFD M
Sbjct: 270 ESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAM 329

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM-KPDKVTMLSVISACAHLGVLDQA 369
             +D+  W+A+IS Y +   P+EAL+LF+E+Q+    KPD+VT++S +SACA LG +D  
Sbjct: 330 PNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLG 389

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
             IH+YI K     +  +  ++IDMY KCG L+ A  VF  + R++V  W++MI   A+H
Sbjct: 390 GWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMH 449

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G  ++A+  F+KM+++ + PN VTF  +L ACSH GLV+EGR  F  M   Y + P  +H
Sbjct: 450 GHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKH 509

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           Y CMVD+ GRA LL EA+EL+E MP AP   +WG+L+ AC +H  + LAE A  QL++L+
Sbjct: 510 YACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELE 569

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P + GA VLLSNIYAK  +W  V  LRK M++ G+ KE  CS IE++  V+EFL  D SH
Sbjct: 570 PGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSH 629

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEE--KREVILWHSEKLALCYGLISS 667
               +IY KL+E+++ L+  GYVP+  S L+ L +EE  K + +  HSEKLA+ +GLIS+
Sbjct: 630 PSAKKIYAKLDEIVARLETIGYVPN-KSHLLQLVEEEDVKEQALFLHSEKLAIAFGLIST 688

Query: 668 KKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            +   IRIVKNLRVC DCH+  KLVSK+Y REI++RDR RFHH+++G CSC DYW
Sbjct: 689 GQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 300/712 (42%), Positives = 444/712 (62%), Gaps = 42/712 (5%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTT---PSSLYYA 70
           P +  +  C ++  + + HA ++K          LLLK  +    L +     P+S+ YA
Sbjct: 26  PKTLILEQCKTIRDLNEIHAHLIK--------TRLLLKPKVAENLLESAAILLPTSMDYA 77

Query: 71  LSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARA 130
           +SIF QI  P S   N  IR  +    P  A+ +F +M    +  D F+FP ILK  +R 
Sbjct: 78  VSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRL 137

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
           + L EG Q+H L  K GFGS  FV+  L+ MY  CG++  AR +FD+MS R++  W+ M 
Sbjct: 138 QALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMF 197

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
            GY ++G ++EV+ LF EM   ++  DE+ L  +L+AC R  +L  GE ++ ++ +  + 
Sbjct: 198 AGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLK 257

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
            +  L ++L+ MYA                               + GQV+ AR +FDQM
Sbjct: 258 GNPTLITSLVDMYA-------------------------------KCGQVDTARRLFDQM 286

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
             +D++ WSAMISGY++ +  +EAL LF+EMQ   + P+++TM+S++S+CA LG L+  +
Sbjct: 287 DRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGK 346

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
            +H +I K      + +  A++D YAKCGS+ES+ EVF +M  +NV+SWT +I   A +G
Sbjct: 347 WVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNG 406

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
             + AL +F  M +++++PN VTFIGVL ACSHAGLVDEGR++F SM+ ++ I P+ EHY
Sbjct: 407 QGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHY 466

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
           GCMVD+ GRA L+ EA + ++ MP  PN VIW +L+A+C+VH  +E+ E + KQL+ L+P
Sbjct: 467 GCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEP 526

Query: 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK 610
            H G  +LLSNIYA   RW+D  ++R  MKE+GI K   CS IE++  ++EF   D  H 
Sbjct: 527 THSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHS 586

Query: 611 QTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD 670
           Q+++IY  + +++ ++K AGYVP+   A +D E+++K   +  HSEKLA+ +GLI S   
Sbjct: 587 QSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPG 646

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + IRI KNLRVC DCHN  KLVSKV+ REIV+RDRTRFHH+K+G CSC DYW
Sbjct: 647 TTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 315/755 (41%), Positives = 458/755 (60%), Gaps = 74/755 (9%)

Query: 6   QPTK--PLTL----PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL 59
           QPT   P  L    P+ T +S+C S  ++KQ H+QI+K +  H++Q +L   +   + S 
Sbjct: 20  QPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIK-TGLHNTQFALSKLIEFCAIS- 77

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
                 +L YAL +F  I  P   + N  IR  S S  P  A+  +++ML  G+  + ++
Sbjct: 78  ---PFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYT 134

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL---------- 169
           FP +LK+ A+     EG Q+HG   KLG  SDPFV T L+ MY   G++           
Sbjct: 135 FPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSS 194

Query: 170 ---------------------DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
                                DAR +F+++  RD V W+ MI GY Q+G F+E L  F+E
Sbjct: 195 LRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQE 254

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           MK +NV P+E  +  +LSAC+++G+L  G  V  +I D+ +                   
Sbjct: 255 MKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLG------------------ 296

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
                         NL +  A++  YS+ G ++ AR +F+ + EKD+I W+ MI GY+  
Sbjct: 297 -------------SNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHM 343

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG-GDLRV 387
           N  +EAL LF +MQ   ++P+ VT +S++ ACA+LG LD  + IH YIDK   G  +  +
Sbjct: 344 NSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSL 403

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
             ++IDMYAKCG++E+A++VF  M+ +++ SW +MI+  A+HG A  AL  F +M+DE  
Sbjct: 404 WTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGF 463

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
           +P+ +TF+GVL ACSHAGLV+ GR+ F+SM  +Y+I PK +HYGCM+DL GRA L  EA 
Sbjct: 464 EPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAE 523

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
            L++ M   P+  IWGSL+ ACRVHG +EL EFAAK L +L+P++ GA VLLSNIYA   
Sbjct: 524 ALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAG 583

Query: 568 RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627
           RW DV  +R  + ++G+ K   CS IE+++ V+EFL  D+ H+Q+  IY+ L+E+   L+
Sbjct: 584 RWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLE 643

Query: 628 PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHN 687
            AG+VPD    L D+++E K   +  HSEKLA+ +GLIS+K ++ IRIVKNLRVC +CH+
Sbjct: 644 KAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHS 703

Query: 688 FIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            IKL+SK++ REI+ RDR RFHH+KDG CSC DYW
Sbjct: 704 AIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  602 bits (1553), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 295/704 (41%), Positives = 441/704 (62%), Gaps = 5/704 (0%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           +  C S+  +KQ H+  +K+  S    +  L +  + +F     +   + YA  +F  IP
Sbjct: 14  LEKCKSMYQLKQIHSHTIKMGLS----SDPLFQKRVIAFCCAHES-GKMIYARQVFDAIP 68

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P   + N  I+  S  + P++ + ++L ML   +  DRF+FP +LK   R   L  G  
Sbjct: 69  QPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKV 128

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +     K GF S+ FVQ   + M+  C  +  AR +FD     ++V W++M+ GY +   
Sbjct: 129 LLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQ 188

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
           F +   LF EM+   V P+ + L  +LSACS+  +L  G+ ++++I    V  +  L++ 
Sbjct: 189 FKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENV 248

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           LI M+A CG MD A+ +FD +  ++++  T++V+G++  GQ++ AR  FDQ+ E+D + W
Sbjct: 249 LIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSW 308

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +AMI GY   N   EAL LF EMQ+  +KPD+ TM+S+++ACAHLG L+  + +  YIDK
Sbjct: 309 TAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDK 368

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
           N+   D  V NA+IDMY KCG++  A++VF+ M  ++  +WT+MI   AI+G    AL  
Sbjct: 369 NSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAM 428

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F+ M + SI P+ +T+IGVL AC+HAG+V++G+  F SMT ++ I P   HYGCMVDL G
Sbjct: 429 FSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLG 488

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558
           RA  L EA E++  MP  PN ++WGSL+ ACRVH  ++LAE AAKQ+L+L+P++    VL
Sbjct: 489 RAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVL 548

Query: 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEK 618
           L NIYA  KRW+++ ++RK M ERGI K   CS +E+N  VYEF+  D+SH Q+ +IY K
Sbjct: 549 LCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAK 608

Query: 619 LNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKN 678
           L  ++ +L  AGY PD     +DL +E+K   +  HSEKLA+ Y LISS     IRIVKN
Sbjct: 609 LENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIVKN 668

Query: 679 LRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LR+C DCH+  KLVS+ Y RE+++RD+TRFHH++ G CSC ++W
Sbjct: 669 LRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 211/469 (44%), Gaps = 69/469 (14%)

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA--CGKILDARLMF 175
           F   PI   + + + + +  Q+H    K+G  SDP  Q  ++    A   GK++ AR +F
Sbjct: 6   FGESPI-SLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVF 64

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           D +    +  W+ MI GY +       ++++  M  SN++PD      +L   +R   L 
Sbjct: 65  DAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQ 124

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
           YG+ +    + +    +  +Q   I M++ C  +D+A+ +FD      +V    M+SGY+
Sbjct: 125 YGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYN 184

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           R  Q + +++                               LF EM+  G+ P+ VT++ 
Sbjct: 185 RVKQFKKSKM-------------------------------LFIEMEKRGVSPNSVTLVL 213

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           ++SAC+ L  L+  + I+ YI+      +L + N +IDM+A CG ++ A+ VF+ M+ R+
Sbjct: 214 MLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRD 273

Query: 416 VISWTSMINAFA--------------------------IHGDAR-----NALIFFNKMKD 444
           VISWTS++  FA                          I G  R      AL  F +M+ 
Sbjct: 274 VISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQM 333

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
            ++ P+  T + +L AC+H G ++ G E   +  ++ +I         ++D++ +   + 
Sbjct: 334 SNVKPDEFTMVSILTACAHLGALELG-EWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVG 392

Query: 505 EALELVETMPFAPNVVIWGSLMAACRV--HGEIELAEFAAKQLLQLDPD 551
           +A ++ + M        W +++    +  HGE  LA F+      + PD
Sbjct: 393 KAKKVFKEMHHKDKFT-WTAMIVGLAINGHGEEALAMFSNMIEASITPD 440


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 296/729 (40%), Positives = 454/729 (62%), Gaps = 16/729 (2%)

Query: 3   TLSQPTKPLTLPTSTA----ISSCSSLTHMKQTHAQILKLS--HSHHSQNSLLLKLLLTS 56
             S P +P T    +     I  C SL  +KQTH  +++       +S + L     L+S
Sbjct: 17  NFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSS 76

Query: 57  FSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI- 115
           F+       SL YA  +F +IP P S   N  IRA +    P  ++  FL M++E     
Sbjct: 77  FA-------SLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYP 129

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           ++++FP ++KA A    L  G  +HG+  K   GSD FV   L+  Y +CG +  A  +F
Sbjct: 130 NKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 189

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
             +  +D+V W+ MI+G+ Q G  D+ L LF++M+  +V+   + +  +LSAC++  NL 
Sbjct: 190 TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLE 249

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
           +G  V  +I +N V ++  L + ++ MY  CG ++ AK LFD +  K+ V  T M+ GY+
Sbjct: 250 FGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA 309

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC-GMKPDKVTML 354
            +   E AR + + M +KD++ W+A+IS Y +N  P EAL +F+E+Q+   MK +++T++
Sbjct: 310 ISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLV 369

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           S +SACA +G L+  + IH YI K+    +  V +A+I MY+KCG LE +REVF  + +R
Sbjct: 370 STLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKR 429

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           +V  W++MI   A+HG    A+  F KM++ ++ PNGVTF  V  ACSH GLVDE   +F
Sbjct: 430 DVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLF 489

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
             M + Y I P+ +HY C+VD+ GR+  L +A++ +E MP  P+  +WG+L+ AC++H  
Sbjct: 490 HQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHAN 549

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
           + LAE A  +LL+L+P +DGA VLLSNIYAK  +W++V ELRK M+  G+ KE  CS IE
Sbjct: 550 LNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIE 609

Query: 595 MNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL-W 653
           ++  ++EFL+ D +H  ++++Y KL+EV+ +LK  GY P+I   L  +E+EE +E  L  
Sbjct: 610 IDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNL 669

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HSEKLA+CYGLIS++    IR++KNLRVC DCH+  KL+S++Y REI++RDR RFHH+++
Sbjct: 670 HSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRN 729

Query: 714 GVCSCKDYW 722
           G CSC D+W
Sbjct: 730 GQCSCNDFW 738


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 294/712 (41%), Positives = 440/712 (61%), Gaps = 45/712 (6%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILK---LSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYA 70
           P   ++  C++++ +KQ HAQ+L+         +   +    L  S SLP        YA
Sbjct: 42  PCLLSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLP--------YA 93

Query: 71  LSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARA 130
             +F+QIP P +   N  IR  +  + P+ A+  +  M+ +GL  DRF+FP + K+    
Sbjct: 94  RLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGV- 152

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
             L EG Q+H   TKLGF SD ++Q  L+ MY  CG ++ AR +FDKM  + +V W+ MI
Sbjct: 153 --LCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMI 210

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
             Y Q  L  E + LF  M++++V+P+E+ L  +L+AC+R+ +L   + VH++I +  + 
Sbjct: 211 GAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIG 270

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
               L S L+ +Y  CGC  +A                               R +F++M
Sbjct: 271 FHTVLTSALMDVYCKCGCYPLA-------------------------------RDLFNKM 299

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
            EK+L CW+ MI+G+ E++  +EAL LFNEMQ+ G+K DKVTM S++ AC HLG L+  +
Sbjct: 300 PEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGK 359

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
            +H+YI+K     D+ +  A++DMYAKCGS+ESA  VF+ M  ++V++WT++I   A+ G
Sbjct: 360 WLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCG 419

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
               AL  F++M+   + P+ +TF+GVL ACSHAGLV+EG   F SM N+Y I P  EHY
Sbjct: 420 QGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHY 479

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
           GCMVD+ GRA  + EA +L++ MP AP+  +   L++ACR+HG + +AE AA+QL++LDP
Sbjct: 480 GCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDP 539

Query: 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK 610
            + G  VLLSNIY+  K W+   ++R+ M ER I K   CS IE+   V+EF+  D SH 
Sbjct: 540 KNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHP 599

Query: 611 QTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD 670
           Q+ +IYE L++++  LK AGYVPD    L D++++EK   +  HSEKLA+ +GL+S+   
Sbjct: 600 QSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPG 659

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + IR+VKNLRVC DCH+ +K +S+VY REI++RDR RFHH+  G CSC+D+W
Sbjct: 660 TPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 303/724 (41%), Positives = 443/724 (61%), Gaps = 27/724 (3%)

Query: 2   STLS-QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           STL   PT   T PTS +    S+L   KQ HA I+K +H HH+     L++ L  F   
Sbjct: 32  STLKFNPTPLQTPPTSPSQHDLSTLEQTKQIHAHIIK-THFHHA-----LQIPLNDF--- 82

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
              PS L             PS   N  I + +  ++P++AL V+ ++      +D F  
Sbjct: 83  ---PSGL------------SPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMA 127

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
           P +LKA  +      G ++HG   K G   D FV   L+ MYG C  +  ARL+FDKM  
Sbjct: 128 PSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMME 187

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           RD+V WS MI    +N  FD  L L  EM    V P E+ +  +++  +   N+  G+A+
Sbjct: 188 RDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAM 247

Query: 241 HEFII--DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
           H ++I   NN  +     + L+ MYA CG + +A+ LF+ +  K +V  TAM++G  R+ 
Sbjct: 248 HAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSN 307

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
           ++E+AR +FD    +D++ W+AM+S YA+ N   +A  LF++M+  G++P KVT++S++S
Sbjct: 308 RLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLS 367

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
            CA  G LD  + +H YIDK     D  +N A++DMYAKCG + +A  +F     R++  
Sbjct: 368 LCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICM 427

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           W ++I  FA+HG    AL  F +M+ + + PN +TFIG+L+ACSHAGLV EG+++F  M 
Sbjct: 428 WNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMV 487

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
           + + + P+ EHYGCMVDL GRA LL EA E++++MP  PN ++WG+L+AACR+H   +L 
Sbjct: 488 HTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLG 547

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
           E AA QLL+++P++ G  VL+SNIYA   RW D   +RK+MK  G+ KE   S IE+N  
Sbjct: 548 ELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGT 607

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           V+EFL  D+SH Q  +I E L E+  +L  AGYVPD  + L+++++EEK   + +HSEKL
Sbjct: 608 VHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKL 667

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+ +GLIS+   + IRIVKNLRVC DCH   KL+SK+Y R I++RDR RFHH+++G CSC
Sbjct: 668 AMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSC 727

Query: 719 KDYW 722
            DYW
Sbjct: 728 GDYW 731


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 298/730 (40%), Positives = 450/730 (61%), Gaps = 19/730 (2%)

Query: 5   SQPTKPLTLPTSTA----ISSCSSLTHMKQTHAQILKLS--HSHHSQNSLLLKLLLTSFS 58
           S PT      T+         C+S   +KQ HAQ+L+ +  H  ++ + L      +SFS
Sbjct: 128 SSPTPASATATNVGDRALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFS 187

Query: 59  LPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDR 117
                  +L YA  +F QIP P     N  IRA++ S  P  ++ VF++ML++     ++
Sbjct: 188 -------ALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNK 240

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
           F+FP ++KA+A     L G  VHG+  K  FG D FV   L+  Y +CG +  A L+F+ 
Sbjct: 241 FTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEM 300

Query: 178 M--SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           +  + +DIV W+ M+ G+ Q G  D+ L+LFE M+   V P+ + +  ++SAC++  NL+
Sbjct: 301 IEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLT 360

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G  V ++I  N + ++ ++ +  I M+  CG +++A+GLFD +  +++V  T ++ GY+
Sbjct: 361 LGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYA 420

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC--GMKPDKVTM 353
           +  +   AR IFD M  KD+  W+ +ISGY ++  P+EAL +F E+Q+   G +PD+VT+
Sbjct: 421 KMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTL 480

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
           LS +SACA LG +D  + IH YI K     +  +  ++IDMY+K G +E A EVF  +  
Sbjct: 481 LSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGN 540

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           ++V  W++MI   A+HG    A+  F  M++  + PN VTF  +L ACSH+GLVDEG+ +
Sbjct: 541 KDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRL 600

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           F  M   Y + PK +HY CMVD+ GRA  L EAL+ +E MP AP+  +WG+L+ AC +HG
Sbjct: 601 FDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHG 660

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
            +ELAE A  +LL+++P + GA VLLSN+YAK   W+ V ELR+ M++ G+ KE  CS I
Sbjct: 661 NLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSI 720

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL- 652
           E++  V+EF+  D +H  +  IY KL+E+++ L+  GYV +    L  +E+EE +E  L 
Sbjct: 721 EIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALK 780

Query: 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712
            HSEK+A+ +GLI +     IRIVKNLRVC DCH   K+VSKVY R+IV+RDR RFHH+ 
Sbjct: 781 LHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFS 840

Query: 713 DGVCSCKDYW 722
            G CSC+DYW
Sbjct: 841 GGHCSCQDYW 850


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 296/731 (40%), Positives = 455/731 (62%), Gaps = 18/731 (2%)

Query: 3   TLSQPTKPLT-----LPTSTAISSCSSLTHMKQTHAQILK--LSHSHHSQNSLLLKLLLT 55
             S P +P T       T + I  CSSL  +KQTHA +++  +    +S + L     L+
Sbjct: 17  NFSNPNQPTTNNERSRHTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALS 76

Query: 56  SFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI 115
           SF+       SL YA  +F +IP P S   N  IRA +    P  ++  FL M++     
Sbjct: 77  SFA-------SLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQC 129

Query: 116 --DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
             ++++FP ++KA A    L  G  +HG+  K   GSD FV   L+  Y +CG +  A  
Sbjct: 130 YPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACK 189

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +F  +  +D+V W+ MI+G+ Q G  D+ L LF++M+  +V+   + +  +LSAC++  +
Sbjct: 190 VFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRD 249

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           L +G  V  +I +N V ++  L + ++ MY  CG ++ AK LFD +  K+ V  T M+ G
Sbjct: 250 LEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDG 309

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC-GMKPDKVT 352
           Y+ +   E AR + + M +KD++ W+A+IS Y +N  P EAL +F+E+Q+   +K +++T
Sbjct: 310 YAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQIT 369

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           ++S +SACA +G L+  + IH YI KN    +  V +A+I MY+KCG LE AREVF  + 
Sbjct: 370 LVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVE 429

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
           +R+V  W++MI   A+HG    A+  F KM++ ++ PNGVTF  V  ACSH GLVDE   
Sbjct: 430 KRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAES 489

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
           +F  M + Y I P+ +HY C+VD+ GR+  L +A++ +E MP  P+  +WG+L+ AC++H
Sbjct: 490 LFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIH 549

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
             + LAE A  +LL+L+P +DGA VLLSNIYAK  +W +V ELRK M+  G+ KE  CS 
Sbjct: 550 ANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSS 609

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652
           IE++  ++EFL+ D +H  ++++Y KL+EV+ +LK  GY P++   L  +E+EE +E  L
Sbjct: 610 IEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSL 669

Query: 653 -WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHY 711
             HSEKLA+CYGLIS++    IR++KNLR+C DCH   KL+S++Y REI++RDR RFHH+
Sbjct: 670 NLHSEKLAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHF 729

Query: 712 KDGVCSCKDYW 722
           ++G CSC D+W
Sbjct: 730 RNGQCSCNDFW 740


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 298/712 (41%), Positives = 442/712 (62%), Gaps = 14/712 (1%)

Query: 17  TAISSCSSLTHMKQTHAQILK--LSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIF 74
           + I  CSS   +K+ HA++L+  L     S + L     L+SFS       +L YA ++F
Sbjct: 30  STIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFS-------TLDYARNLF 82

Query: 75  SQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIARAEGL 133
            QIP P     N  IRA + S  P  +  +FL +L++   + ++F+FP ++KA +  +  
Sbjct: 83  DQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKAS 142

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
             G  VHG+  KL FG D ++   LV  YGACG +  A  +F  +S +D+V W+ MI  +
Sbjct: 143 RVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAF 202

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
            Q    ++ L LF +M+  NV P+ + +  +LSAC++  +L +G  V  +I    + +D 
Sbjct: 203 AQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDL 262

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
            L + ++ MY  CG +D A+ LFD++  +++   T M+ GY++ G  + ARL+F+ M  K
Sbjct: 263 TLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVK 322

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGM-KPDKVTMLSVISACAHLGVLDQAQRI 372
           ++  W+ +IS Y +N  P+EAL +FNE+Q+  + KPD+VT++S +SACA LG +D    I
Sbjct: 323 EIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWI 382

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H+YI +     +  + ++++DMYAKCGSLE A EVF  +  R+V  W++MI    +HG  
Sbjct: 383 HVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRG 442

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
           + A+  F +M++  + PN VTF  VL ACSHAGLVDEGR  F  M   Y + P+ +HY C
Sbjct: 443 KAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYAC 502

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           MVD+ GRA  L EA+EL+  M   P+  +WG+L+ AC +H  +EL E A+ QLL+L+P +
Sbjct: 503 MVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRN 562

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
            GA+VLLSNIYAK  RW+ V ELRK M++  + KE  CS IE N  V+EFL  D +H  +
Sbjct: 563 HGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLS 622

Query: 613 DQIYEKLNEVISELKPAGYVPDIHSALVDL--EDEEKREVILWHSEKLALCYGLISSKKD 670
             IY KL E+ ++LK  GY P+  S L+ L  ED+ K + +  HSEKLA+ +GL++    
Sbjct: 623 SNIYSKLEEIATKLKSVGYEPN-KSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPS 681

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             IR+VKNLR+C DCH F KLVS+VY R+I++RDR RFHH++DG CSC DYW
Sbjct: 682 QPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 294/706 (41%), Positives = 435/706 (61%), Gaps = 54/706 (7%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP-------SSLYYALSIFSQI 77
           ++ +KQ HAQ+L+              L    F+              SL YA  +FSQI
Sbjct: 1   MSQLKQIHAQMLRTG------------LFFDPFTASKIVAFCSLQESGSLQYARLVFSQI 48

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
           P P S   N  IR  +  +  + AL  + +M+ +GL  DR++FP + K+   +    EG 
Sbjct: 49  PNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSS---EGK 105

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           Q+H   TKLGF SD + Q  L+ MY  CG ++ AR +FDKM  + +V W+ MI  + Q  
Sbjct: 106 QIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWD 165

Query: 198 LFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
             +E + LF+ M K  NV+P+E+ L  +L+AC+RA +L+  + +HE+I ++         
Sbjct: 166 QPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFG------ 219

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
                                    +++V++T ++  Y + G V+ AR +FD+  EK+L 
Sbjct: 220 -------------------------RHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLF 254

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            W+ MI+G+ E+++ +EAL LF EMQ  G+K DKVTM S++ AC HLG L+  + +H YI
Sbjct: 255 SWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYI 314

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            K     D+ +  A++DMYAKCGS+E+A +VF  M  ++V++WT++I   A+ G A NAL
Sbjct: 315 KKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENAL 374

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
            +F++M  + + P+ +TF+GVL ACSHAG VDEG   F SM++ Y I P  EHYG +VD+
Sbjct: 375 QYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDI 434

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
            GRA  + EA EL+++MP AP+  + G L+ ACR+HG +E AE AAKQLL++DP H G  
Sbjct: 435 LGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTY 494

Query: 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           VLLSNIY   K+W++    R+ M ERG+ K   CS+IE++  V+EF+  D SH+Q+ +I 
Sbjct: 495 VLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEIN 554

Query: 617 EKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIV 676
           E L ++IS+LK AGYVPD    L D+ +EEK   +  HSEKLA+ +GL+S+   + IR+V
Sbjct: 555 EMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVV 614

Query: 677 KNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KNLR+C DCH+  KL+SK+Y REI++RDR RFHH+KDG CSC+ +W
Sbjct: 615 KNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 202/430 (46%), Gaps = 49/430 (11%)

Query: 12  TLPTSTAISSCSSLTHMKQTHAQILKLSHSH--HSQNSLLLKLLLTSFSLPTTTPSSLYY 69
           T P+     SC + +  KQ H    KL  +   ++QN+L+            +    L  
Sbjct: 90  TFPS--LFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMY---------SNCGCLVS 138

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML-NEGLTIDRFSFPPILKAIA 128
           A  +F ++           I   +   +P  A+++F +M+ +E +  +  +   +L A A
Sbjct: 139 ARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACA 198

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           RA  L    ++H    + GFG    + T L+ +Y  CG +  AR +FDK   +++  W++
Sbjct: 199 RARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNI 258

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI+G+ ++  ++E L LF EM+   ++ D++ ++ +L AC+  G L  G+ +H +I    
Sbjct: 259 MINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQR 318

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           + +D  L + L+ MYA CG ++ A  +F ++  K+++  TA++ G +  GQ E+      
Sbjct: 319 IDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAEN------ 372

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
                                    AL+ F+EM + G+KPD +T + V++AC+H G +D+
Sbjct: 373 -------------------------ALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDE 407

Query: 369 AQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINA 425
               H     + +G    + +   ++D+  + G +  A E+ + M    +      ++ A
Sbjct: 408 GIS-HFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGA 466

Query: 426 FAIHGDARNA 435
             IHG+   A
Sbjct: 467 CRIHGNLEAA 476


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 297/740 (40%), Positives = 435/740 (58%), Gaps = 67/740 (9%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P+   +S C S+   KQ HA I+K        N+L     L  FS   +    + YA+S+
Sbjct: 31  PSLKLLSKCQSIRTFKQIHAHIIKTG----LHNTLFALSKLIEFS-AVSRSGDISYAISL 85

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F+ I  P   + N  IR +S S  P  AL  F++M+  G+  + ++FP +LK+ A+    
Sbjct: 86  FNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASA 145

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD----------- 182
            EG Q+H    KLGF SD F+ T L+ MY   G++ +A+L+FD+ ++RD           
Sbjct: 146 HEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGY 205

Query: 183 --------------------IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
                               +V W+ MI GY Q G   E L LFE+M+ +NV P+E  + 
Sbjct: 206 ALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIV 265

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            +LSAC+++  L  G ++  +I D                               + L  
Sbjct: 266 SVLSACAQSNALDLGNSMRSWIED-------------------------------RGLCS 294

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           NL +  A++  YS+ G ++ AR +FD M+E+D+I W+ MI GY      +EAL LF EM 
Sbjct: 295 NLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREML 354

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
             G++P ++T LS++ +CAHLG +D  + IH YI+KN       ++ ++ID+YAKCG++ 
Sbjct: 355 ASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIV 414

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
           +AR+VF+ M+ +++ SW +MI   A+HG A  A   F+KM  + I+PN +TF+G+L AC 
Sbjct: 415 AARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACK 474

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
           HAGLVD G++ F+SM  +Y I PK +HYGCM+DL GRA L  EA  L++ M   P+  IW
Sbjct: 475 HAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIW 534

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582
           GSL+ ACR HG +EL E  A++L +L+PD+ GA VLLSNIYA   +W DV  +R  + +R
Sbjct: 535 GSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDR 594

Query: 583 GILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDL 642
           G+ K   C+ IE++N V+EFL  D+ H Q++ IY  L EV  +LK  G+V D    L D+
Sbjct: 595 GMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDM 654

Query: 643 EDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVI 702
           ++E K   +  HSEKLA+ +GLIS+K  + IRI+KNLRVC +CH+  KL+SK++ REI+ 
Sbjct: 655 DEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIA 714

Query: 703 RDRTRFHHYKDGVCSCKDYW 722
           RDR RFHH+KDG CSC DYW
Sbjct: 715 RDRNRFHHFKDGSCSCNDYW 734


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 288/709 (40%), Positives = 434/709 (61%), Gaps = 36/709 (5%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P S  +  C +   ++Q HA +LK   +    + ++ + +L S +L    P ++ YALSI
Sbjct: 23  PKSLILQQCKTPKDLQQVHAHLLK---TRRLLDPIITEAVLESAAL--LLPDTIDYALSI 77

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F+ I  P S   N  IR +++   P +AL +F KM  + +  D+F+F  +LKA +R + L
Sbjct: 78  FNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKAL 137

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
            EG QVH L  K GF S+ FV+  L+ MY  CG+I  AR +FD M  R IV W+ M+ GY
Sbjct: 138 REGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGY 197

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
            +NGL+DEV+ LF ++    +E D++ +  +L AC R  NL  GE + E+I+   +  + 
Sbjct: 198 TKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNN 257

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
            L ++LI MYA CG +D A+ LFD++  +++V  +AM+SGY++A +              
Sbjct: 258 TLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRC------------- 304

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
                             +EAL LF+EMQ   + P++VTM+SV+ +CA LG  +  + +H
Sbjct: 305 ------------------KEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVH 346

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
            YI K      + +   +ID YAKCG ++ + EVF+ M  +NV +WT++I   A +G+ +
Sbjct: 347 FYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGK 406

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
            AL FF+ M +  + PN VTFIGVL ACSHA LVD+GR +F SM  +++I P+ EHYGCM
Sbjct: 407 MALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCM 466

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553
           VD+ GRA  L EA + ++ MPF PN V+W +L+A+CR H  IE+AE + + + +L+P H 
Sbjct: 467 VDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHS 526

Query: 554 GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTD 613
           G  +LLSN YA   R +D   +R  +KE+ I K   CS IE++  V+EF + D  HK + 
Sbjct: 527 GDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSK 586

Query: 614 QIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCI 673
           +I++ L++++ ++K  GYVP+   A ++ E+E K   +  HSEKLA+ YGLI +   + I
Sbjct: 587 EIHDALDKMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTI 646

Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           RI KNLR+C DCHN  K +S+V+ R I++RDR RFHH+KDG+CSC DYW
Sbjct: 647 RISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 291/708 (41%), Positives = 436/708 (61%), Gaps = 10/708 (1%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           I  C++   +KQ HA +L+ S       +     LLT++++  ++ S L YA ++F+QIP
Sbjct: 79  IDQCTNTMQLKQIHAHMLRTSRFCDPYTA---SKLLTAYAI--SSCSCLIYAKNVFNQIP 133

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIARAEGLLEGM 137
            P     N  IR  + S  P  +  +FL ML+      ++F+FP + KA +R + L  G 
Sbjct: 134 QPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGS 193

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
            +HG+  K    SD F+   L+  YG+ G    A  +F  M  +D+V W+ MI+ +   G
Sbjct: 194 VLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGG 253

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
           L D+ L LF+EM+M +V+P+ + +  +LSAC++  +L +G  +  +I +N       L +
Sbjct: 254 LPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNN 313

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
            ++ MY  CGC++ AK LF+K+  K++V  T M+ G+++ G  ++A  IFD M  K    
Sbjct: 314 AMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAA 373

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVC-GMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
           W+A+IS Y +N  P+ AL LF+EMQ+    KPD+VT++  + A A LG +D    IH+YI
Sbjct: 374 WNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYI 433

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            K+    +  +  +++DMYAKCG+L  A EVF  + R++V  W++MI A A++G  + AL
Sbjct: 434 KKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAAL 493

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             F+ M +  I PN VTF  +L AC+HAGLV+EG ++F  M   Y I P+ +HY C+VD+
Sbjct: 494 DLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDI 553

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
           FGRA LL +A   +E MP  P   +WG+L+ AC  HG +ELAE A + LL+L+P + GA 
Sbjct: 554 FGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAF 613

Query: 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           VLLSNIYAK   W+ V  LRK M++  + KE  CS I++N  V+EFL  D SH  + +IY
Sbjct: 614 VLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIY 673

Query: 617 EKLNEVISELKPAGYVPDIHSALVDLEDEEK--REVILWHSEKLALCYGLISSKKDSCIR 674
            KL+E+  + KP GY PD+ S L+ L +E+    + +  HSEKLA+ +GLIS+     IR
Sbjct: 674 SKLDEISEKFKPIGYKPDM-SNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQPIR 732

Query: 675 IVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           IVKN+R+C DCH F KLVS++Y R+I++RDR RFHH++ G CSC DYW
Sbjct: 733 IVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/759 (39%), Positives = 437/759 (57%), Gaps = 76/759 (10%)

Query: 3   TLSQPTKPLTL----PTSTAISSCSSLTHMKQTHAQILKLS-HSHHSQNSLLLKLLLTSF 57
           + S P+ P  L    P+ T +S+C +L  +KQ H+QI+K   H+ H   S L++    S 
Sbjct: 15  SFSDPSPPYKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVS- 73

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117
                    L YALS+F  I  P   + N  IR +S S  P  AL+ ++ M++ G   + 
Sbjct: 74  -----PHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNE 128

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
           ++FP I K+  +  G  EG QVH    KLG   + FV T L+ MY   G++++ARL+FDK
Sbjct: 129 YTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDK 188

Query: 178 MS-------------------------------YRDIVPWSVMIDGYFQNGLFDEVLNLF 206
            S                                RD+V W+ MI GY Q+G  +E +  F
Sbjct: 189 SSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFF 248

Query: 207 EEMKMSNVEPDEMVLSKILSACSRAGN-LSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           EEM+ + V P+   +  +LSAC+++G+ L  G  V  +I D  +  +  L + LI MY  
Sbjct: 249 EEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVK 308

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
           C                               G +E+A  +F+++ +K+++ W+ MI GY
Sbjct: 309 C-------------------------------GDLEEASNLFEKIQDKNVVSWNVMIGGY 337

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN--AFGG 383
              +  +EAL LF  M    + P+ VT LS++ ACA+LG LD  + +H Y+DKN  +   
Sbjct: 338 THMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKN 397

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
            + +  ++IDMYAKCG L  A+ +F+ M  +++ +W +MI+ FA+HG    AL  F++M 
Sbjct: 398 TVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMT 457

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
            E   P+ +TF+GVL AC HAGL+  GR  F+SM  +Y + PK  HYGCM+DLFGRA L 
Sbjct: 458 SEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLF 517

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563
            EA  LV+ M   P+  IW SL+ ACR+H  IELAE  AK L +L+P++  A VLLSNIY
Sbjct: 518 DEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIY 577

Query: 564 AKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVI 623
           A   RW+DV ++R  + +  + K   CS IE+++ V+EFL  D+ H Q+++IY+ L+E+ 
Sbjct: 578 AGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEID 637

Query: 624 SELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCE 683
             L+ AG+VPD    L D+++E K  V+  HSEKLA+ +GLIS+K  + IRI+KNLRVC 
Sbjct: 638 MRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCG 697

Query: 684 DCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +CH+  KL+SK++ REI+ RDR RFHH+KDG CSCKDYW
Sbjct: 698 NCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/717 (39%), Positives = 426/717 (59%), Gaps = 40/717 (5%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSH-SHHSQNSLLLKLLLTSFSLPTTTPS 65
           P +   +    A SS ++L   K  H++IL   H S  +  + L+K+     S       
Sbjct: 225 PNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCR-- 282

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
                  +F ++        N  I  ++     + A +V+ +M  EG+  ++ ++  +L 
Sbjct: 283 ------QVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLN 336

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A   +  L  G ++H    K GF SD  VQ  L+ MY  CG I DARL+FDKM  +D++ 
Sbjct: 337 ACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVIS 396

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ MI G  ++G   E L +++EM+ + VEP+ +  + IL+ACS    L +G  +H+ ++
Sbjct: 397 WTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVV 456

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
           +  +A DAH+ +TL+ MY+ CG                                V+DAR 
Sbjct: 457 EAGLATDAHVGNTLVNMYSMCG-------------------------------SVKDARQ 485

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +FD+M+++D++ ++AMI GYA +N  +EALKLF+ +Q  G+KPDKVT +++++ACA+ G 
Sbjct: 486 VFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGS 545

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L+ A+ IH  + K  F  D  V NA++  YAKCGS   A  VFE+M +RNVISW ++I  
Sbjct: 546 LEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGG 605

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
            A HG  ++AL  F +MK E + P+ VTF+ +L ACSHAGL++EGR  F SM+ ++ I P
Sbjct: 606 SAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIP 665

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
             EHYGCMVDL GRA  L EA  L++TMPF  N  IWG+L+ ACR+HG + +AE AA+  
Sbjct: 666 TIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESS 725

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
           L+LD D+    V LS++YA    W    +LRK M++RG+ KE   S I++ ++++ F+  
Sbjct: 726 LKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAE 785

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           DRSH Q+++IY +L+ +   +K  GYVPD  S + D+++ EK   +  HSE+LA+ YGLI
Sbjct: 786 DRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLI 845

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S+   + I I KNLRVC DCH   K +SK+  REI+ RD  RFHH+KDGVCSC DYW
Sbjct: 846 STPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 131/466 (28%), Positives = 241/466 (51%), Gaps = 35/466 (7%)

Query: 97  RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQT 156
           R + A ++F KM  EG+  +R ++  +L A +    L  G  VH      G  SD  V T
Sbjct: 207 RSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGT 266

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
            LV MY  CG   D R +F+K+  RD++ W+ MI G  + G ++E   ++ +M+   V P
Sbjct: 267 ALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMP 326

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           +++    +L+AC  +  L +G+ +H  +       D  +Q+ LI+MY+ CG +  A+ +F
Sbjct: 327 NKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVF 386

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           DK++ K+++  TAM+ G +++G                                  EAL 
Sbjct: 387 DKMVRKDVISWTAMIGGLAKSG-------------------------------FGAEALT 415

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           ++ EMQ  G++P++VT  S+++AC+    L+  +RIH  + +     D  V N +++MY+
Sbjct: 416 VYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYS 475

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
            CGS++ AR+VF+RM +R+++++ +MI  +A H   + AL  F+++++E + P+ VT+I 
Sbjct: 476 MCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYIN 535

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           +L AC+++G ++  REI  ++  +            +V  + +     +A  + E M   
Sbjct: 536 MLNACANSGSLEWAREIH-TLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMT-K 593

Query: 517 PNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALVLLS 560
            NV+ W +++     HG  +  L  F   ++  + PD    + LLS
Sbjct: 594 RNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLS 639



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 144/526 (27%), Positives = 241/526 (45%), Gaps = 71/526 (13%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           ALK+  +M   GL  DR +    L +      L  G ++H    + G   D  V   ++ 
Sbjct: 110 ALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILN 169

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG I +AR +FDKM  + +V W++ I GY   G  +    +F++M+   V P+ + 
Sbjct: 170 MYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRIT 229

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
              +L+A S    L +G+AVH  I++     D  + + L+ MYA CG     + +F+K++
Sbjct: 230 YISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLV 289

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            ++L+    M+ G +  G  E                               EA +++N+
Sbjct: 290 NRDLIAWNTMIGGLAEGGYWE-------------------------------EASEVYNQ 318

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQ  G+ P+K+T + +++AC +   L   + IH  + K  F  D+ V NA+I MY++CGS
Sbjct: 319 MQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGS 378

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           ++ AR VF++M R++VISWT+MI   A  G    AL  + +M+   ++PN VT+  +L A
Sbjct: 379 IKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNA 438

Query: 461 CSHAGLVDEGREIFA---------------SMTNEYN---------------IPPKYEHY 490
           CS    ++ GR I                 ++ N Y+               I      Y
Sbjct: 439 CSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAY 498

Query: 491 GCMVDLFGRANLLREALELVETMP---FAPNVVIWGSLMAACRVHGEIELAE----FAAK 543
             M+  +   NL +EAL+L + +      P+ V + +++ AC   G +E A        K
Sbjct: 499 NAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRK 558

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
                D     ALV   + YAK   + D   + + M +R ++   A
Sbjct: 559 GGFFSDTSVGNALV---STYAKCGSFSDASIVFEKMTKRNVISWNA 601



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/525 (24%), Positives = 235/525 (44%), Gaps = 67/525 (12%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A+ V   +  +G  ++   +  +LK     + L+ G QVH    +     D +    L+ 
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 161 MYGACGKILDARLMFDKMSY--RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           MY  CG I +AR ++ K+SY  R +  W+ M+ GY Q G  ++ L L  +M+   + PD 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
             +   LS+C   G L +G  +H   +   +  D  + + ++ MYA CG ++ A+ +FDK
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +  K++V  T  + GY+  G+ E                                A ++F
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSET-------------------------------AFEIF 215

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            +M+  G+ P+++T +SV++A +    L   + +H  I       D  V  A++ MYAKC
Sbjct: 216 QKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKC 275

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           GS +  R+VFE++  R++I+W +MI   A  G    A   +N+M+ E + PN +T++ +L
Sbjct: 276 GSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILL 335

Query: 459 YACSHAGLVDEGREIF-----ASMTNEYNIP----PKYEHYG------------------ 491
            AC ++  +  G+EI      A  T++  +       Y   G                  
Sbjct: 336 NACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVI 395

Query: 492 ---CMVDLFGRANLLREALELVETMPFA---PNVVIWGSLMAACRVHGEIELAEFAAKQL 545
               M+    ++    EAL + + M  A   PN V + S++ AC     +E      +Q+
Sbjct: 396 SWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQV 455

Query: 546 LQLDPDHDGALV-LLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
           ++     D  +   L N+Y+     +D  ++   M +R I+   A
Sbjct: 456 VEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNA 500



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 144/282 (51%), Gaps = 33/282 (11%)

Query: 200 DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259
           D  +++ + ++    + +     K+L  C    +L  G  VH+ II +    D +  + L
Sbjct: 5   DGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNAL 64

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM--VEKDLIC 317
           I MY  CG                                +E+AR ++ ++  +E+ +  
Sbjct: 65  INMYIQCG-------------------------------SIEEARQVWKKLSYMERTVHS 93

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W+AM+ GY +  + ++ALKL  +MQ  G+ PD+ T++S +S+C   G L+  + IH    
Sbjct: 94  WNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAM 153

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           +     D++V N I++MYAKCGS+E AREVF++M +++V+SWT  I  +A  G +  A  
Sbjct: 154 QAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFE 213

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            F KM+ E + PN +T+I VL A S    +  G+ + + + N
Sbjct: 214 IFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILN 255


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 294/727 (40%), Positives = 430/727 (59%), Gaps = 51/727 (7%)

Query: 2   STLSQPTKPLTLPTS-----TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTS 56
           S++S+   PLT P S     +  + C +L H+KQ HAQI+    +HH  NS      L S
Sbjct: 81  SSMSRTPNPLTNPPSNPQILSLFNPCKTLRHLKQVHAQII----THH--NSPFQLSALAS 134

Query: 57  FSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTID 116
            S  +  P+ L YA +IF  +  PP  + N  IRA+S S  P  AL ++  ML  GL  D
Sbjct: 135 LSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPD 194

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
             ++P ++KA   +     G+ VH    K GF  D ++ + L+ +Y     +  A+ +F+
Sbjct: 195 HMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFN 254

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
             S RD+V W+ MIDGY ++           EM  + +  D MV   ++S          
Sbjct: 255 LCSARDVVSWNAMIDGYVKH----------VEMGHARMVFDRMVCRDVIS---------- 294

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
                               +T+I  YA  G +D AK LFD++  +NLV   +M++G+ +
Sbjct: 295 -------------------WNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVK 335

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
            G VEDA  +F +M  +D++ W++M++ YA+   P EAL LF++M+  G+KP + T++S+
Sbjct: 336 CGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSL 395

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           +SACAHLG LD+   +H YI+ N    +  V  A++DMYAKCG +  A +VF  M  ++V
Sbjct: 396 LSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDV 455

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           ++W ++I   AIHG+ + A   F +MK+  ++PN +TF+ +L ACSHAG+VDEG+++   
Sbjct: 456 LAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDC 515

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           M++ Y I PK EHYGC++DL  RA  L EA+EL+ TMP  PN    G+L+  CR+HG  E
Sbjct: 516 MSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFE 575

Query: 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMN 596
           L E   K+L+ L P H G  +LLSNIYA  K+W D  ++R  MK  GI K    S IE+ 
Sbjct: 576 LGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELK 635

Query: 597 NEVYEFLTADRSHKQTDQIYEKLNEVISELKPA-GYVPDIHSALVDLEDEEKREVILWHS 655
             V+ F+  D SH ++++IYEKLNE+ + LK A GY  D  + L+D+E+E+K   +  HS
Sbjct: 636 GMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHS 695

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ YGL+       IRIVKNLRVC DCH+ IKL+SKVY REI++RDR RFHH++DG 
Sbjct: 696 EKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGE 755

Query: 716 CSCKDYW 722
           CSC D+W
Sbjct: 756 CSCLDFW 762


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 283/705 (40%), Positives = 431/705 (61%), Gaps = 38/705 (5%)

Query: 20  SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA 79
           + C+S++  KQ HA +L+   +H   N L    L++  +L  +    L YA  +F+Q+  
Sbjct: 19  THCTSISKTKQAHALLLR---THLLHNPLFSSKLISFLALSHS--GDLNYARKLFTQMQN 73

Query: 80  PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQV 139
           P   + N  IR  + S  P  A+ ++  M+  G+ +D +++P +L A AR   +  G + 
Sbjct: 74  PDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRF 133

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
           H    K GFGSD FV   L+  Y  CG    A  +FD+ + RD+V W++MI+ +   GL 
Sbjct: 134 HCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLS 193

Query: 200 DEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
           ++  +L +EM K+ N+ PDE+ +  ++ AC++ GNL  G+ +H +     + LD      
Sbjct: 194 EKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSY--SKELGLD------ 245

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
                                  +NL V+ A++  Y +   +E A+ +F+++ EKD++ W
Sbjct: 246 -----------------------ENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSW 282

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           ++M+SG A++ + QEAL LF +MQ+  ++ D++T++ V+SACA  G LDQ + IHL IDK
Sbjct: 283 TSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDK 342

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
                DL +  A++DMYAKCGS++ A +VF RMR RNV +W ++I   A+HG   +A+  
Sbjct: 343 FEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISL 402

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F++M+ + + P+ VTFI +L ACSHAGLVDEG  +F +M N++ I P+ EHYGC+VDL  
Sbjct: 403 FDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLC 462

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558
           RA  + +AL  +E MP   N V+W +L+ ACR  G  +LAE   +++++L+PD  G  V+
Sbjct: 463 RARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVM 522

Query: 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEK 618
           LSN+YA   +W    +LRK MK +GI K   CS IE+N  +++F+  DRSH QT+QIY  
Sbjct: 523 LSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAM 582

Query: 619 LNEVISELK-PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVK 677
           + E+   +    G+VP   + L D+E+EEK   +  HSEKLA+  GLIS+   S IRIVK
Sbjct: 583 IEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVK 642

Query: 678 NLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           NLRVC DCH+F+K+ SKVY REIV RDR+RFHH+K+G CSC D+W
Sbjct: 643 NLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 285/689 (41%), Positives = 421/689 (61%), Gaps = 60/689 (8%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L YA+S+F  I  P   + N  +R  + S  P  AL+++++M++ G   + +SFP +LK+
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP- 185
            A+++   EG Q+H    KLG G D +V T L+ MY   G + DAR +FD  S+RD+V  
Sbjct: 74  CAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSC 133

Query: 186 ------------------------------WSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
                                         W+ MI GY +NG ++E L LF+EM  +NV 
Sbjct: 134 TALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVR 193

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           PDE  L  ++SAC+++G++  G  VH ++   +   D H  S+                 
Sbjct: 194 PDEGTLVSVVSACAQSGSIELGRQVHSWV---DDDDDDHGFSS----------------- 233

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
                  +L +  A++  YS+ G VE A  +F+ +  KD++ W+ +I GY   N  +EAL
Sbjct: 234 -------SLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEAL 286

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIID 393
            LF EM   G  P+ VT+LSV+ ACAHLG +D  + IH+YIDK   G   +  +  ++ID
Sbjct: 287 LLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLID 346

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
           MYAKCG +E+A +VF  M  R++ SW +MI  FA+HG A  A   F++M+   ++P+ +T
Sbjct: 347 MYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDIT 406

Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
           F+G+L ACSH+GL+D GR+IF SMT +YN+ PK EHYGCM+DL G + L +EA E++ TM
Sbjct: 407 FVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTM 466

Query: 514 PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573
           P  P+ VIW SL+ AC+ HG +ELAE  A++L++++P++ G+ VLLSNIYA   RW+DV 
Sbjct: 467 PMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVA 526

Query: 574 ELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVP 633
            +R  +  +G+ K   CS IE+++ V+EF+  D+ H +  +IY  L E+  +L+ AG+ P
Sbjct: 527 RVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAP 586

Query: 634 DIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVS 693
           D    L ++E+E K   +  HSEKLA+ +GLIS+K  + + IVKNLRVC +CH   KL+S
Sbjct: 587 DTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLIS 646

Query: 694 KVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           K+Y REIV RDRTRFHH++DGVCSC DYW
Sbjct: 647 KIYKREIVARDRTRFHHFRDGVCSCCDYW 675


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  563 bits (1452), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 281/701 (40%), Positives = 438/701 (62%), Gaps = 9/701 (1%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           + +C+++  + Q H+Q +K   S  S +  L K+++      T     +YYA  +F +IP
Sbjct: 42  LETCNTMYEINQIHSQTIKTGLS--SNHLFLTKVIIFC---CTKESGDVYYARKVFDEIP 96

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P   + N  I+  S  +  +  + ++  ML   +  D F+FP +LK   +   L  G  
Sbjct: 97  QPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKV 156

Query: 139 VHGLGTKLGF-GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           +       GF  S+ FVQ G + ++  CG +  AR +FD     ++V W+V++ GY +  
Sbjct: 157 LLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFK 216

Query: 198 LFDEVLNLFEEM--KMSNVEPDEMVLSKILSACSRAGNLSYGEAVH-EFIIDNNVALDAH 254
            ++E   LF EM  K   V P+ + L  +LSACS+  +L  G+ ++ ++I +  V  +  
Sbjct: 217 RYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLI 276

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           L++ LI M+A+CG MD A+G+FD++  ++++  T++V+G++   +++ AR  FDQM E+D
Sbjct: 277 LENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERD 336

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
            + W+AMI GY   N  +E L LF +MQ+  +KPD+ TM+S+++ACAHLG L+  +    
Sbjct: 337 YVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKT 396

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           YIDKN    D  + NA+IDMY KCG++E A+++F  M++++  +WT+MI   A +G    
Sbjct: 397 YIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEE 456

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           AL  F+ M + S+ P+ +T+IGV+ AC+H GLV +G+  F++M  ++ I P   HYGCMV
Sbjct: 457 ALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMV 516

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DL GRA  L+EALE++  MP  PN ++WGSL+ ACRVH  ++LAE AA ++L+L+P++  
Sbjct: 517 DLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGA 576

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
             VLL NIYA  K+W+++  +RK M ERGI K   CS +EMN  VYEF+  D+SH Q+ +
Sbjct: 577 VYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKE 636

Query: 615 IYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIR 674
           IY KL  +  +L  AGY PD     +D+ +E+K   +  HSEKLA+ Y LISS K   IR
Sbjct: 637 IYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALISSGKGVTIR 696

Query: 675 IVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           IVKNLR+C DCH+   +VSKVY RE+++RD+TRFHH++ G+
Sbjct: 697 IVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHGL 737


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/717 (40%), Positives = 439/717 (61%), Gaps = 12/717 (1%)

Query: 14  PTSTAI-SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALS 72
           P+S  +  SC S     Q HAQ + ++  HH   S+    L++ FSL   +   L ++  
Sbjct: 10  PSSLCLLESCKSFKQGLQIHAQTI-VNGLHHQIFSI--SRLISFFSL-LGSKDGLDHSRL 65

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIARAE 131
           +FSQI  P   + N  IR  S S  P+ A+ +++ M+ +G+   + F+FP +L + AR  
Sbjct: 66  LFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLS 125

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
            L  G +VH    K GF SD FV+  L+ +Y   G +  AR +FD+   RD+V ++ MI 
Sbjct: 126 SLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIK 185

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           GY +    +  L LF EM+ S + PDE     + S CS     + G+ +H  +  N  ++
Sbjct: 186 GYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSI 245

Query: 252 DAH--LQSTLITMYANCGCMDMAKGLFDKV-LLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           D++  L+S ++ MYA CG +++A+ +F  +   K+    ++MV GY+R G++  AR +F+
Sbjct: 246 DSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFN 305

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
            M E+D+I W+AMISGY++     EAL+LF EM+  G+KPD+VT+++V+SACA LG  D 
Sbjct: 306 HMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDL 365

Query: 369 AQRI-HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINA 425
            +R+ H YI+   F  +  +  A++DMYAKCGS++SA E+F R+ +  +    + SMI  
Sbjct: 366 GKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAG 425

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
            A HG    A+  F ++    + P+ VTF+GVL AC H+GL++EG+++F SM N Y I P
Sbjct: 426 LAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKP 485

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
           + EHYGCMVDL GR   L EA +LV+ MPF  N VIW +L++ACR HG +++ E A ++L
Sbjct: 486 QMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKL 545

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
           L+++  H    VLLSNI A   +W++  ++RK M++ GI K    S IE+   ++ F+ +
Sbjct: 546 LEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVAS 605

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           D+SH Q  +I   L ++   LK AGYVP+    + D+++EEK  V+ +HSEKLAL +GL+
Sbjct: 606 DKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLM 665

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
                  IRIVKNLR+C DCH   KLVS++Y REI +RD  RFHH+++G CSC D+W
Sbjct: 666 YCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 286/744 (38%), Positives = 438/744 (58%), Gaps = 72/744 (9%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP--SSLYYAL 71
           P+ + + +C +L  ++  HAQ++K     H+ N  L KLL     L   +P    L YA+
Sbjct: 35  PSLSLLHNCKTLQSLRLIHAQMIKTGL--HNTNYALSKLL----ELCVISPHFDGLPYAI 88

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
           S+F  I  P   + N   R  + S  P  ALK+++ M++ GL  + ++FP +LK+ A+++
Sbjct: 89  SVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSK 148

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP------ 185
              EG Q+HG   KLG+  D FV T L+ +Y   G++ DAR +FD+  +RD+V       
Sbjct: 149 AFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIK 208

Query: 186 -------------------------WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
                                    W+ MI GY + G + E L LF+EM  +N+ PDE  
Sbjct: 209 GYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDEST 268

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           +  ++SAC+++G++  G  VH +I D+                                 
Sbjct: 269 MVTVVSACAQSGSIELGRQVHSWIDDHGFG------------------------------ 298

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
             NL +  +++  YS+ G++E A  +F+ ++ KD+I W+ +I GY   N  +EAL LF E
Sbjct: 299 -SNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQE 357

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK--NAFGGDLRVNNAIIDMYAKC 398
           M   G +P+ VTMLS++ ACAHLG +D  + IH+YIDK   +      +  ++IDMYAKC
Sbjct: 358 MLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKC 417

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G +E+A +VF  +  +++ SW +MI  FA+HG A  A   F++M+   I+P+ +TF+G+L
Sbjct: 418 GDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLL 477

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            ACS +G++D GR IF +MT +Y I PK EHYGCM+DL G + L +EA E++  M   P+
Sbjct: 478 SACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPD 537

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
            VIW SL+ AC++ G +EL E  A+ L++++P++ G  VLLSNIYA   RW +V ++R  
Sbjct: 538 GVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRAL 597

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           + ++G+ K   CS IE+++ V+EF+  D+ H +  +IY  L E+   L+ AG+VPD    
Sbjct: 598 LNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEV 657

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           L ++E+E K   +  HSEKLA+ +GLIS+K  + + IVKNLRVC +CH   KL+SK+Y R
Sbjct: 658 LQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKR 717

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EI+ RDRTRFHH++DGVCSC DYW
Sbjct: 718 EIIARDRTRFHHFRDGVCSCNDYW 741


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 289/742 (38%), Positives = 436/742 (58%), Gaps = 68/742 (9%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P+ + +  C +L  ++  HAQ++K     H+ N  L KLL      P      L YA+S+
Sbjct: 4   PSLSLLHXCKTLQSLRIIHAQMIKTGL--HNTNYALSKLLEXCVLSPHF--DGLPYAISV 59

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F  I  P   + N   R  + S  P  ALK+++ M++ GL  + ++FP +LK+ A++   
Sbjct: 60  FDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAF 119

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL-------------------- 173
            EG Q+HG   K GF  D ++ T L+ MY   G++ DA+                     
Sbjct: 120 KEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGY 179

Query: 174 -----------MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
                      MFD++  +D+V W+  I GY + G + E L LF++M  +NV PDE  + 
Sbjct: 180 ASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMV 239

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            +LSAC+++G++  G  VH +I D+                                   
Sbjct: 240 TVLSACAQSGSIELGRQVHSWINDHGFG-------------------------------X 268

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           NL +  A++  YS+ G++E A  +F  +  KD+I W+ +I GY   N  +EAL LF +M 
Sbjct: 269 NLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDML 328

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGS 400
             G KP+ VTMLS++SACAHLG +D  + IH+YIDK   G      +  ++IDMYAKCG 
Sbjct: 329 RSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGD 388

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E+A++VF+ M  R++ SW +MI  FA+HG A  A   F++M+   I+P+ +TF+G+L A
Sbjct: 389 IEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSA 448

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSH+G++D GR IF SMT +Y + PK EHYGCM+DL G + L +EA +++ TM   P+ V
Sbjct: 449 CSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGV 508

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           IW SL+ AC++HG +EL E  A+ L++++P++ G+ VLLSNIYA  +RW +V + R  + 
Sbjct: 509 IWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLN 568

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           ++G+ K   CS IE+++ V+EF+  D+ H +  +IY  L E+   L+ AG+VPD    L 
Sbjct: 569 DKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQ 628

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           ++E+E K   +  HSEKLA+ +GLIS+K  + + IVKNLRVC +CH   KL+SK+Y REI
Sbjct: 629 EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREI 688

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           + RDRTRFHH++DG CSC DYW
Sbjct: 689 IARDRTRFHHFRDGECSCNDYW 710


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 276/627 (44%), Positives = 402/627 (64%), Gaps = 7/627 (1%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEG----LLEGMQVHGLGTKLGFGSDPFVQT 156
           A+  + +ML  G   D ++FP +LKA+ARA G          VH    +LG G +  V +
Sbjct: 3   AVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVAS 62

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
            LV  Y A G    AR +  +      V W+ +I G+ + G F E    F +M  +   P
Sbjct: 63  SLVAAYTAGGDGAAARALVGECD--TPVAWNALISGHNRGGRFGESCGSFVDMARAGAAP 120

Query: 217 DEMVLSKILSACSRAG-NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
             +    +LSAC +   ++  G  VH  ++ + V  D  +++ L+ MYA C  M  A  +
Sbjct: 121 TPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKV 180

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           FD + ++++V  T+++SG +R GQV++AR +FD+M E+D + W+AMI GY      +EAL
Sbjct: 181 FDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREAL 240

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           ++F EMQ   +  D+ TM+SVI+ACA LG L+  + + +Y+ +     D  V NA+IDMY
Sbjct: 241 EMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMY 300

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           +KCGS+E A +VF+ M  R+  +WT++I   A++G    A+  F++M   S  P+ VTFI
Sbjct: 301 SKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFI 360

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
           GVL AC+HAGLVD+GRE F SM   YNI P   HYGC++DL GRA  + EAL+ ++ MP 
Sbjct: 361 GVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPM 420

Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575
            PN  IWG+L+AACRVHG  E+ E  A++LL+LDP++    +LLSNIYAK  RW+DV  L
Sbjct: 421 TPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRL 480

Query: 576 RKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
           R ++ E+GI KE  CS IEM+  ++EF+  D+SH  + +IY KL  +IS+L   GY PD+
Sbjct: 481 RHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLNNVGYFPDV 540

Query: 636 HSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKV 695
               V++ ++EK++V+ WHSEKLA+ + L+SSK ++ IRIVKNLR+C DCHN IKL+S++
Sbjct: 541 TEVFVEVAEKEKKKVLYWHSEKLAIAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRL 600

Query: 696 YAREIVIRDRTRFHHYKDGVCSCKDYW 722
           Y RE+V+RDRTRFHH++ G CSCKDYW
Sbjct: 601 YGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 169/403 (41%), Gaps = 20/403 (4%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P   +      I    W+ R + AL++F +M    ++ D F+   ++ A A+
Sbjct: 208 ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQ 267

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G  V    ++ G   D FV   L+ MY  CG I  A  +F  M +RD   W+ +
Sbjct: 268 LGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAI 327

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN-N 248
           I G   NG  +E + +F  M   +  PDE+    +L+AC+ AG +  G      +I+  N
Sbjct: 328 ILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYN 387

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKV-LLKNLVVSTAMVSGYSRAGQVEDARLIF 307
           +A +      +I +    G +  A    D++ +  N  +   +++     G  E   L+ 
Sbjct: 388 IAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVA 447

Query: 308 DQMVEKD---LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
           ++++E D    + +  + + YA+ N  ++  +L + +   G+K +    L  +    H  
Sbjct: 448 ERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEF 507

Query: 365 VL-DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM---RRRNVISWT 420
           V  DQ+  +   I             +II      G      EVF  +    ++ V+ W 
Sbjct: 508 VAGDQSHPMSKEIYSKL--------ESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWH 559

Query: 421 S--MINAFAIHGDARNALIFFNKMKDESID-PNGVTFIGVLYA 460
           S  +  AFA+     N +I   K     +D  N +  I  LY 
Sbjct: 560 SEKLAIAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYG 602


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 290/727 (39%), Positives = 428/727 (58%), Gaps = 71/727 (9%)

Query: 31  THAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP--SSLYYALSIFSQIPAPPSRVSNKF 88
           THAQ++K     H+ N  L KLL     L   +P    L YA+S+F     P   + N  
Sbjct: 1   THAQMVKTGL--HNTNYALSKLL----ELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTM 54

Query: 89  IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148
           +R ++ S      L+++++M++ G   + ++FP +LK+ A+++   EG Q+H    KLG 
Sbjct: 55  LRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGC 114

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP----------------------- 185
             D +  T L+ MY   G++ DAR +FD  S RD+V                        
Sbjct: 115 ELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDX 174

Query: 186 --------WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
                   W+ MI GY +N  ++E L LF+EM  +NV PDE  L  +LSAC+++G++  G
Sbjct: 175 ITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELG 234

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
             +H  + D++                                  +L +  A +  YS+ 
Sbjct: 235 REIHTLVDDHHG------------------------------FGSSLKIVNAFIGLYSKC 264

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           G VE A  +F+ +  KD++ W+ +I GY   N  +EAL LF EM   G  P+ VTMLSV+
Sbjct: 265 GDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVL 324

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
            ACAHLG +D  + IH+YIDK   G      +  ++IDMYAKCG +E+A +VF  M  ++
Sbjct: 325 PACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKS 384

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           + SW +MI  FA+HG A  A   F++M+   I+P+ +T +G+L ACSH+GL+D GR IF 
Sbjct: 385 LSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFK 444

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           S+T +YNI PK EHYGCM+DL G A L +EA E++  MP  P+ VIW SL+ AC++HG +
Sbjct: 445 SVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNL 504

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           ELAE  A++L++++P++ G+ VLLSNIYA   RW+DV  +R+ +  +G+ K   CS IE+
Sbjct: 505 ELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEI 564

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
           ++ V+EF+  D+ H Q+ +IY  L E+   L+ AG+VPD    L ++E+E K   +  HS
Sbjct: 565 DSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHS 624

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ +GLIS+K  + + +VKNLRVC +CH   KL+SK+Y REIV RDRTRFHH++DGV
Sbjct: 625 EKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGV 684

Query: 716 CSCKDYW 722
           CSC DYW
Sbjct: 685 CSCCDYW 691


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 277/656 (42%), Positives = 404/656 (61%), Gaps = 33/656 (5%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAI 127
           YA S+F+          N  +RA   S+ P+ AL+ + +ML     + DRF+FP +LK  
Sbjct: 30  YAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGC 89

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
           A       G  +HG   K    SD +++T L+ MY ACG +  AR +F++M +R+ V W+
Sbjct: 90  ALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWT 149

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
            MI GY +N   +E L L+++M+     PDE+ ++ ++SAC+   +L  G  +H  I + 
Sbjct: 150 SMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREM 209

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
           ++ + A L S L+ MYA                               + G ++ AR +F
Sbjct: 210 DMKICAVLGSALVNMYA-------------------------------KCGDLKTARQVF 238

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPDKVTMLSVISACAHLGVL 366
           D++ +KD+  WSA+I GY +NN   EAL+LF E+     M+P++VT+L+VISACA LG L
Sbjct: 239 DKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDL 298

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           +  + +H YI +   G  + +NN++IDM++KCG +++A+ +F+ M  +++ISW SM+N F
Sbjct: 299 ETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGF 358

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           A+HG  R AL  F  M+   + P+ +TFIGVL ACSHAGLV EG+++F  +   Y +  K
Sbjct: 359 ALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLK 418

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            EHYGCMVDL  RA LL EA E +  MP  P+  IWGS++ ACRV+  +EL E AA+ LL
Sbjct: 419 SEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLL 478

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           +L+P +DG  +LLSNIYAK K W +V ++R+ M E+GI K   CS + ++N  + FL  D
Sbjct: 479 KLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGD 538

Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS 666
            SH +  +I   L +V  +LK AGYV D    L++++D +K E +  HSEKLALCYGL+ 
Sbjct: 539 CSHPEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLK 598

Query: 667 SKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S+    I I+KNLRVC DCH  IKLVSK+Y R+I +RDR RFHH+KDG CSC+DYW
Sbjct: 599 SEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 291/738 (39%), Positives = 439/738 (59%), Gaps = 68/738 (9%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P+ + + +C +L  ++  HA+++K     H+ N  L KL+   FS+ +     L YA+S+
Sbjct: 4   PSLSLLHNCKTLQSLRIIHAKMIKTGL--HNTNYALSKLI--EFSVLSPHFDGLTYAISV 59

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F  I  P   + N   R  + S  P  AL +++ M++ GL  + ++FP +LKA A+++  
Sbjct: 60  FDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAF 119

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
            EG Q+HG   KLG   D +V T L+ MY   G+  DAR +FD+ S+RD+V ++ +I GY
Sbjct: 120 REGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGY 179

Query: 194 FQNG-------LFDEV------------------------LNLFEEMKMSNVEPDEMVLS 222
             NG       +FDE+                        L LF+EM  +NV+PDE  + 
Sbjct: 180 ASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMV 239

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            +LSAC+++ ++  G  VH +I D+    +  + + LI +Y  C                
Sbjct: 240 TVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKC---------------- 283

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
                          G+VE A  +F+ +  KD+I W+ +I GY   N  +EAL LF EM 
Sbjct: 284 ---------------GEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEML 328

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGS 400
             G  P++VTMLS++ ACAHLG +D  + IH+YIDK   G      +  ++IDMYAKCG 
Sbjct: 329 RSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGD 388

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E+A++VF+ M  R++ SW +MI  FA+HG A  A   F++M+ + I+P+ +TF+G+L A
Sbjct: 389 IEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSA 448

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSH+G++D GR IF SMT +Y I PK EHYGCM+DL G + L +EA E++ +M   P+ V
Sbjct: 449 CSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGV 508

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           IW SL+ AC++HG +EL E  A+ L++++P + G+ VLLSNIYA   RW +V + R  + 
Sbjct: 509 IWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLN 568

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           ++G+ K   CS IE+++ V+EF+  D+ H +  +IY  L E+   L+ AG+VPD    L 
Sbjct: 569 DKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQ 628

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           ++E+E K   +  HSEKLA+ +GLIS+K  + + IVKNLRVC +CH   KL+SK+Y REI
Sbjct: 629 EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREI 688

Query: 701 VIRDRTRFHHYKDGVCSC 718
           + RDRTRFHH+ DGVCSC
Sbjct: 689 IARDRTRFHHFXDGVCSC 706


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 280/717 (39%), Positives = 424/717 (59%), Gaps = 40/717 (5%)

Query: 7    PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSH-SHHSQNSLLLKLLLTSFSLPTTTPS 65
            P +   +    A S  ++L   K  H+ IL   H S  +  + L+K+     S       
Sbjct: 343  PNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCR-- 400

Query: 66   SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
                   +F ++        N  I  ++     + A +++ +M  EG+  ++ ++  +L 
Sbjct: 401  ------QVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLN 454

Query: 126  AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
            A      L  G ++H    K GF  D  VQ  L+ MY  CG I DARL+F+KM  +DI+ 
Sbjct: 455  ACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIIS 514

Query: 186  WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
            W+ MI G  ++GL  E L +F++M+ + ++P+ +  + IL+ACS    L +G  +H+ +I
Sbjct: 515  WTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVI 574

Query: 246  DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
            +  +A DAH+ +TL+ MY+ C                               G V+DAR 
Sbjct: 575  EAGLATDAHVANTLVNMYSMC-------------------------------GSVKDARQ 603

Query: 306  IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
            +FD+M ++D++ ++AMI GYA +N  +EALKLF+ +Q  G+KPDKVT +++++ACA+ G 
Sbjct: 604  VFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGS 663

Query: 366  LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
            L+ A+ IH  + K+ +  D  + NA++  YAKCGS   A  VF++M +RNVISW ++I  
Sbjct: 664  LEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGG 723

Query: 426  FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
             A HG  ++ L  F +MK E I P+ VTF+ +L ACSHAGL++EGR  F SM+ ++ I P
Sbjct: 724  CAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITP 783

Query: 486  KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
              EHYGCMVDL GRA  L E   L++TMPF  N  IWG+L+ ACR+HG + +AE AA+  
Sbjct: 784  TIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESS 843

Query: 546  LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
            L+LDPD+    V LS++YA    W    +LRK M++RG+ KE   S IE+ ++++ F+  
Sbjct: 844  LKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAE 903

Query: 606  DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
            DRSH ++++IY +L+++   +K  GYVPD  S + D+++ EK   +  HSE+LA+ YGLI
Sbjct: 904  DRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLI 963

Query: 666  SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            S+   + IRI KNLRVC DCH   K ++K+  REIV RD  RFHH+KDGVCSC DYW
Sbjct: 964  STLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 238/453 (52%), Gaps = 35/453 (7%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A ++F KM  EG+  +R ++  +L A +    L  G  VH      G  SD  V T LV 
Sbjct: 329 AFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVK 388

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG   D R +F+K+  RD++ W+ MI G  + G ++E   ++ +M+   + P+++ 
Sbjct: 389 MYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKIT 448

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
              +L+AC     L +G  +H  ++ +    D  +Q+ LI+MYA CG +  A+ LF+K++
Sbjct: 449 YVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMV 508

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            K+++  TAM+ G +++G                                  EAL +F +
Sbjct: 509 RKDIISWTAMIGGLAKSGL-------------------------------GAEALAVFQD 537

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQ  G+KP++VT  S+++AC+    LD  +RIH  + +     D  V N +++MY+ CGS
Sbjct: 538 MQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGS 597

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           ++ AR+VF+RM +R+++++ +MI  +A H   + AL  F+++++E + P+ VT+I +L A
Sbjct: 598 VKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNA 657

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           C+++G ++  +EI + +  +  +         +V  + +     +AL + + M    NV+
Sbjct: 658 CANSGSLEWAKEIHSLVLKDGYLSDT-SLGNALVSTYAKCGSFSDALLVFDKM-MKRNVI 715

Query: 521 IWGSLMAACRVHGEIE--LAEFAAKQLLQLDPD 551
            W +++  C  HG  +  L  F   ++  + PD
Sbjct: 716 SWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPD 748



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 139/474 (29%), Positives = 232/474 (48%), Gaps = 64/474 (13%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + ALK+  +M   GL + R +   +L +      L  G ++H    K     D  V   +
Sbjct: 226 EEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCI 285

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + MY  CG I +AR +FDKM  + +V W+++I GY   G  +    +F++M+   V P+ 
Sbjct: 286 LNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNR 345

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           +    +L+A S    L +G+ VH  I      L+A  +S                     
Sbjct: 346 ITYINVLNAFSGPAALKWGKTVHSHI------LNAGHES--------------------- 378

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
               +L V TA+V  Y++ G  +D R +F+++V +DLI W+ MI G AE  + +EA +++
Sbjct: 379 ----DLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIY 434

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           ++MQ  GM P+K+T + +++AC +   L   + IH  + K+ F  D+ V NA+I MYA+C
Sbjct: 435 HQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARC 494

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           GS++ AR +F +M R+++ISWT+MI   A  G    AL  F  M+   + PN VT+  +L
Sbjct: 495 GSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSIL 554

Query: 459 YACSHAGLVDEGREIFA---------------SMTNEYNIPPKYEH-------------- 489
            ACS    +D GR I                 ++ N Y++    +               
Sbjct: 555 NACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIV 614

Query: 490 -YGCMVDLFGRANLLREALELVETMP---FAPNVVIWGSLMAACRVHGEIELAE 539
            Y  M+  +   NL +EAL+L + +      P+ V + +++ AC   G +E A+
Sbjct: 615 AYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAK 668



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/525 (24%), Positives = 239/525 (45%), Gaps = 67/525 (12%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A+ V   +  +G  ++   +  +LK     + L+ G +VH    +     D +    L+ 
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 161 MYGACGKILDARLMFDKMSY--RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           MY  CG I +AR +++K+++  R +  W+ M+ GY Q G  +E L L  EM+   +    
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGR 244

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
               ++LS+C     L  G  +H   +   +  D ++ + ++ MYA CG +  A+ +FDK
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDK 304

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +  K++V  T ++ GY+  G                               H + A ++F
Sbjct: 305 METKSVVSWTIIIGGYADCG-------------------------------HSEIAFEIF 333

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            +MQ  G+ P+++T ++V++A +    L   + +H +I       DL V  A++ MYAKC
Sbjct: 334 QKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKC 393

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           GS +  R+VFE++  R++I+W +MI   A  G+   A   +++M+ E + PN +T++ +L
Sbjct: 394 GSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILL 453

Query: 459 YACSHAGLVDEGREIFASMTNE---YNIPPK------YEHYG------------------ 491
            AC +   +  GREI + +  +   ++I  +      Y   G                  
Sbjct: 454 NACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDII 513

Query: 492 ---CMVDLFGRANLLREALELVETMPFA---PNVVIWGSLMAACRVHGEIELAEFAAKQL 545
               M+    ++ L  EAL + + M  A   PN V + S++ AC     ++      +Q+
Sbjct: 514 SWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQV 573

Query: 546 LQLDPDHDGALV-LLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
           ++     D  +   L N+Y+     +D  ++   M +R I+   A
Sbjct: 574 IEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNA 618



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 139/282 (49%), Gaps = 33/282 (11%)

Query: 200 DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259
           D  +++ + ++      +     K+L  C    +L  G  VHE II +   LD +  + L
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM--VEKDLIC 317
           I MY  CG                                +E+AR +++++   E+ +  
Sbjct: 183 INMYIQCG-------------------------------SIEEARQVWNKLNHTERTVHS 211

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W+AM+ GY +  + +EALKL  EMQ  G+   + T + ++S+C     L+  + IH+   
Sbjct: 212 WNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAM 271

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           K     D+ V N I++MYAKCGS+  AREVF++M  ++V+SWT +I  +A  G +  A  
Sbjct: 272 KARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFE 331

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            F KM+ E + PN +T+I VL A S    +  G+ + + + N
Sbjct: 332 IFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILN 373


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/623 (44%), Positives = 400/623 (64%), Gaps = 1/623 (0%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A+  + +ML  G   D ++FPP+LKA+AR         VH    K G G +  V T LV 
Sbjct: 27  AVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVT 86

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
            Y A G    AR +  +      V W+ +I G+ +   F E    F +M  +   P  + 
Sbjct: 87  AYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVT 146

Query: 221 LSKILSACSRA-GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
              +LSAC +  G++  G  VH  ++ + V  D  +++ L+ MYA C  M+ A  LFD +
Sbjct: 147 YVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGM 206

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
            ++++V  T+++SG +R G+V++AR +F +M E+D + W+AMI GY +    +EAL++F 
Sbjct: 207 QVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFR 266

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           EMQ   +  D+ TM+SVI+ACA LG L+  + + +Y+ +     D  V NA+IDMY+KCG
Sbjct: 267 EMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCG 326

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           S+E A +VF+ M  R+  +WT++I   A++G    A+  F++M   S  P+ VTFIGVL 
Sbjct: 327 SIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLT 386

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           AC+HAGLVD+GRE F SM   YNI P   HYGC++DLFGRA  + EAL+ ++ MP  PN 
Sbjct: 387 ACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNS 446

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
            IWG+L+AACRVHG  E+ E   ++LLQ+DP++     LLSNIYAK  RW+DV  LR ++
Sbjct: 447 TIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTI 506

Query: 580 KERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
            E+GI KE  CS IEMN  ++EF+  D+SH  + +IY KL  +I++L   GY PD+    
Sbjct: 507 MEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESIINDLNNVGYFPDVTEVF 566

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
           V++ +EEK++V+ WHSEKLA+ + L+SS+ ++ IRIVKNLR+C DCHN IKL+S++Y RE
Sbjct: 567 VEVAEEEKQKVLFWHSEKLAIAFALLSSEPNTVIRIVKNLRMCLDCHNAIKLISRLYGRE 626

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           +V+RDRTRFHH++ G CSCKDYW
Sbjct: 627 VVVRDRTRFHHFRHGFCSCKDYW 649



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 131/290 (45%), Gaps = 15/290 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P   +      I     + R + AL++F +M    ++ D F+   ++ A A+
Sbjct: 230 ARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQ 289

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G  V    ++ G   D FV   L+ MY  CG I  A  +F  M +RD   W+ +
Sbjct: 290 LGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAI 349

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID--- 246
           I G   NG  +E + +F  M   +  PDE+    +L+AC+ AG +  G    EF +    
Sbjct: 350 ILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGR---EFFLSMRE 406

Query: 247 -NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK------NLVVSTAMVSGYSRAGQ 299
             N+A +      +I ++   G +  A    D++ +         +++   V G S  G+
Sbjct: 407 TYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGE 466

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
           +   RL+  QM  ++   ++ + + YA+ N  ++  +L + +   G+K +
Sbjct: 467 LVTERLL--QMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKE 514


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 291/742 (39%), Positives = 437/742 (58%), Gaps = 68/742 (9%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P+ + + +C +L  ++  HAQ++K     H+ N  L +LL   F + +     L YA+S+
Sbjct: 4   PSLSLLHNCKTLQSLRIIHAQMIKTGL--HNTNYALSRLL--EFCILSPNFDGLPYAISV 59

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F  I  P   + N   R  + S  P  A+K+++ M++ GL  + ++FP +LK+ A+ +  
Sbjct: 60  FETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVS 119

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
            EG Q+HG   KLG+  D +V T L+ MY   G+  DA  +FD  S+RD+V ++ +I GY
Sbjct: 120 KEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGY 179

Query: 194 FQNG-------LFDEV------------------------LNLFEEMKMSNVEPDEMVLS 222
              G       +FDE+                        L+LF+EM  +NV+PDE  + 
Sbjct: 180 ASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMV 239

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            ++SAC+++G++  G  VH +I D+ +                                 
Sbjct: 240 TVVSACAQSGSIQLGRQVHSWIDDHGLG-------------------------------S 268

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           NL +  A++  YS+ G+VE A  +F  +  KD+I W+ MI GY   N  +EAL LF EM 
Sbjct: 269 NLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEML 328

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGS 400
             G  P+ VTMLS++ ACA LG +D  + IH+YIDK   G      +  ++IDMYAKCG 
Sbjct: 329 RSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGD 388

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E+A +VF  M  R + +  +MI  FA+HG A  A   F++M+   I+P+ +TF+G+L A
Sbjct: 389 IEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSA 448

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSH+G++D GR IF SMT  Y I PK EHYGCM+DL G   L +EA E++ TM   P+ V
Sbjct: 449 CSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGV 508

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           IW SL+ AC++HG +EL E  A++L++++P++ G+ VLLSNIYA   RW +V  +R  + 
Sbjct: 509 IWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLN 568

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           ++G+ K   CS IE+++ V+EF+  D+ H +  +IY  L E+   L+ AG+VPD    L 
Sbjct: 569 DKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQ 628

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           ++E+E K+  +  HSEKLA+ +GLIS+K  + + IVKNLRVC +CH   KL+SK+Y REI
Sbjct: 629 EMEEEFKQGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREI 688

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           + RDRTRFHH++DGVCSC DYW
Sbjct: 689 IARDRTRFHHFRDGVCSCNDYW 710


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 275/656 (41%), Positives = 403/656 (61%), Gaps = 33/656 (5%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAI 127
           YA S+F+          N  +RA   S+ P+ AL+ + +ML     + DRF+FP +LK  
Sbjct: 30  YAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGC 89

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
           A       G  +HG   K    SD +++T L+ MY ACG +  AR +F++M +R+ V W+
Sbjct: 90  ALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWT 149

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
            MI GY +N   +E L L+++M+     PDE+ ++ ++SAC+   +L  G  +H  I + 
Sbjct: 150 SMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREM 209

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
           ++ + A L S L+ MYA                               + G ++ AR +F
Sbjct: 210 DMKICAVLGSALVNMYA-------------------------------KCGDLKTARQVF 238

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPDKVTMLSVISACAHLGVL 366
           DQ+ +KD+  WSA+I GY +NN   EAL+LF E+     M+P++VT+L+VISACA LG L
Sbjct: 239 DQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDL 298

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           +  + +H YI +   G  + +NN++IDM++KCG +++A+ +F+ M  +++ISW SM+N  
Sbjct: 299 ETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGL 358

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           A+HG  R AL  F+ M+   + P+ +TFIGVL ACSHAGLV EG+++F  +   Y +  K
Sbjct: 359 ALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLK 418

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            EHYGCMVDL  RA LL EA E +  MP  P+  IWGS++ ACRV+  +EL E AA+ LL
Sbjct: 419 SEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLL 478

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           +L+P +DG  +LLSNIYA+ K W +V ++R+ M E+GI K   CS + ++N  + FL  D
Sbjct: 479 ELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGD 538

Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS 666
            SH +  +I   L +V  +LK  GYV D    L++++D +K E +  HSEKLALCYGL+ 
Sbjct: 539 CSHPEIAEISIMLRQVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLK 598

Query: 667 SKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S+    I I+KNLRVC DCH  IKLVSK+Y R+I +RDR RFHH+KDG CSC+DYW
Sbjct: 599 SEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 280/703 (39%), Positives = 424/703 (60%), Gaps = 34/703 (4%)

Query: 23  SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPP- 81
           ++L  + Q HA +LK      S +S    L   +   P T+ + L YA+ +F   P PP 
Sbjct: 74  AALRDVPQLHATLLKSGAMTTSPDSFHSLLEAAALPAPATSSAHLSYAIRLFRLGPHPPR 133

Query: 82  -SRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPILKAIARAEGLLEGMQV 139
            +R  N  IR+   +  P+ AL +F++ML++  ++ D+ +    +K+ +R   L  G  V
Sbjct: 134 SARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGV 193

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
                K GF  D FV   L+ MY +CG ++ A ++F  +  + ++ W+ MI GY +NG +
Sbjct: 194 QAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDW 253

Query: 200 DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259
            EV+ +F+ M       DE+ L  + +AC R G+ + G+ + E                 
Sbjct: 254 KEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAE----------------- 296

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWS 319
              YA            +K +L++  ++TA+V  Y++ G+++ AR +FD+M  +D++ WS
Sbjct: 297 ---YAE-----------EKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWS 342

Query: 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379
           AMISGY +++  +EAL +FNEMQ   + P+ VTM+SV+SACA LG L+  + +H YI + 
Sbjct: 343 AMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRK 402

Query: 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFF 439
                + +  A++D YAKCG ++ A + FE M  RN  +WT++I   A +G +R AL  F
Sbjct: 403 DLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELF 462

Query: 440 NKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499
           + M + +I+P  VTFIGVL ACSH  LV+EGR  F SMT +Y I P+ EHYGCMVDL GR
Sbjct: 463 SSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGR 522

Query: 500 ANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLL 559
           A L+ EA + +  MP  PN V+W +L++AC VH  +E+ E A KQ++ LDP H G  +LL
Sbjct: 523 AGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILL 582

Query: 560 SNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKL 619
           SN YA   +W++   +RK MKE+G+ K   CS IE+   ++EF   D  H Q  +IYEK+
Sbjct: 583 SNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKV 642

Query: 620 NEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNL 679
           +E+I  +K  GY+P+   A +D+++ EK+  +  HSEKLA+ +GL+ S+  + IR+ KNL
Sbjct: 643 HEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLSKNL 702

Query: 680 RVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           RVC DCH+  KL+SKVY REI++RDR RFHH+KDG+CSC DYW
Sbjct: 703 RVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 278/687 (40%), Positives = 414/687 (60%), Gaps = 64/687 (9%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           YA+S+F+ I  P   + N  +R  + S  P  ALK+++ M++ GL  + ++FP +LK+ A
Sbjct: 18  YAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCA 77

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP--- 185
           +++   EG Q+HG   KLG+  D +V T L+ MY   G++ DA  +FD+ S+RD+V    
Sbjct: 78  KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTA 137

Query: 186 ----------------------------WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
                                       W+ MI GY + G + E L LF+EM  +NV PD
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPD 197

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           E  +  +LSAC+++ ++  G  VH +I D+                              
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQVHSWIDDHGFG--------------------------- 230

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                NL +  A++  YS+ GQVE A  +F+ +  KD++ W+ +I GY   N  +EAL L
Sbjct: 231 ----SNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLL 286

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA--FGGDLRVNNAIIDMY 395
           F EM   G  P+ VT++S++ ACAHLG +D  + IH+YIDK          +  ++IDMY
Sbjct: 287 FQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMY 346

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           AKCG +E+A +VF  M  +++ SW +MI  FA+HG A      F++M+   I+P+ +TF+
Sbjct: 347 AKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFV 406

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
           G+L ACSH+G +D GR IF SMT +Y+I PK EHYGCM+DL G + L +EA E+++TMP 
Sbjct: 407 GLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPM 466

Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575
            P+ VIW SL+ ACR HG +ELAE  A+ L++++P++ G+ VLLSNIYA    W +V ++
Sbjct: 467 EPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKV 526

Query: 576 RKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
           R  +  +G+ K   CS IE+++EV+EF+  D+ H +  +IY  L E+ + L+ AG+VPD 
Sbjct: 527 RALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDT 586

Query: 636 HSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKV 695
              L ++E+E K   +  HSEKLA+ +GLIS+K  + + IVKNLRVC +CH   KLVSK+
Sbjct: 587 SEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKI 646

Query: 696 YAREIVIRDRTRFHHYKDGVCSCKDYW 722
           Y REI+ RDRTRFHH++DGVCSC D+W
Sbjct: 647 YKREIIARDRTRFHHFRDGVCSCNDFW 673


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 289/746 (38%), Positives = 437/746 (58%), Gaps = 76/746 (10%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P+ + + +C +L  ++  HAQ++K     H+ N  L KL+   F + +     L YA+S+
Sbjct: 4   PSLSLLHNCKTLQSLRMIHAQMIKTGL--HNTNYALSKLI--EFCVLSPHFDGLPYAISV 59

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F  I  P   + N   R  + S  P  AL +++ M++ GL  + ++FP +LK+ A+++  
Sbjct: 60  FETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAF 119

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP-------- 185
            EG Q+HG   KLG+  D +V T L+ MY   G++ DAR +FD+ S+RD+V         
Sbjct: 120 REGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGY 179

Query: 186 -----------------------WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
                                  W+ MI GY + G   E L LF+EM  +NV PDE  + 
Sbjct: 180 ASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMV 239

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            ++SAC+++ ++  G  VH +I D+    +  + + LI +Y  C                
Sbjct: 240 SVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKC---------------- 283

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
                          G+VE A  +F+ +  KD+I W+ +I GY   N  +EAL LF EM 
Sbjct: 284 ---------------GEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEML 328

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA------IIDMYA 396
             G  P+ VTMLS++ ACAHLG ++  + IH+YI+K   G    V NA      +IDMYA
Sbjct: 329 RSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKG----VANASSHRTSLIDMYA 384

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KCG +E+A++VF+ +  R++ SW +MI  FA+HG A  A   F++M+   I+P+ +TF+G
Sbjct: 385 KCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVG 444

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           +L ACSH+G++D GR IF SM  +Y I PK EHYGCM+DL G + L +EA E++ TM   
Sbjct: 445 LLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME 504

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
           P+ VIW SL+ AC+++  +EL E  A+ L++++P + G+ VLLSNIYA   RW +V ++R
Sbjct: 505 PDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIR 564

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
             + ++G+ K   CS IE+++ V+EF+  D+ H +  +IY  L E+   L+ AG+VPD  
Sbjct: 565 ALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTS 624

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
             L ++E+E K   +  HSEKLA+ +GLIS+K  + + IVKNLRVC +CH   KL+SK+Y
Sbjct: 625 EVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIY 684

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
            REI+ RDRTRFHH++DGVCSC DYW
Sbjct: 685 KREIIARDRTRFHHFRDGVCSCNDYW 710


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 278/689 (40%), Positives = 409/689 (59%), Gaps = 64/689 (9%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L YA+S+F  I  P   + N   R  + S  P  ALK+++ M++ GL  + ++FP +LK+
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY------------------------ 162
            A+ +   EG+Q+HG   KLG+  D +V T L+ MY                        
Sbjct: 73  CAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSY 132

Query: 163 -------GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
                   + G I  AR MFD++  +D+V W+ MI GY + G + E L LF+EM  +NV 
Sbjct: 133 TALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVR 192

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           PDE  +  ++SA +R+G++  G  VH +I D+                            
Sbjct: 193 PDESTMVTVISASARSGSIELGRQVHSWIADHGFG------------------------- 227

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
                  NL +  A++  YS+ G++E A  +F  +  KD+I W+ +I GY   N  +EAL
Sbjct: 228 ------SNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEAL 281

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIID 393
            LF EM   G  P+ VTMLS++ ACAHLG +D  + IH+YIDK   G      +  ++ID
Sbjct: 282 LLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLID 341

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
           MY+KCG +E+A +VF  M  +++ +W +MI  FA+HG A  A   F++M+   I P+ +T
Sbjct: 342 MYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDIT 401

Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
           F+G+L ACSHAG++D GR IF SMT+ Y I PK EHYGCM+DL G + L +EA E++ TM
Sbjct: 402 FVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTM 461

Query: 514 PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573
              P+ VIW SL+ AC++HG +EL E  A+ L +++P++ G+ VLLSNIYA   RW +V 
Sbjct: 462 TMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVA 521

Query: 574 ELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVP 633
            +R  + ++G+ K   CS IE+++ V+EF+  D+ H +  +IY  L E+   L+ AG+VP
Sbjct: 522 RIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVP 581

Query: 634 DIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVS 693
           D    L ++E+E K   +  HSEKLA+ +GLIS+K ++ + IVKNLRVC +CH   KL+S
Sbjct: 582 DTSEVLQEMEEEFKEGALRHHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLIS 641

Query: 694 KVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           K+Y REI+ RDRTRFHH++DGVCSC DYW
Sbjct: 642 KIYKREIIARDRTRFHHFRDGVCSCNDYW 670


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 283/702 (40%), Positives = 412/702 (58%), Gaps = 64/702 (9%)

Query: 54  LTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGL 113
           L    +P+     L YA S+F  I  P   + N  IR  + S  P  +L +++ M++ GL
Sbjct: 1   LIELCVPSPHFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGL 60

Query: 114 TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY----------- 162
             + ++FP +LK+ A+++   EG Q+HG   KLGF  D +V T L+ MY           
Sbjct: 61  LPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYK 120

Query: 163 --------------------GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202
                                + G I  A+ +FD++  +D+V W+ MI GY + G + E 
Sbjct: 121 VFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEA 180

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           L LFEEM   NV PDE     +LSAC+ +G++  G  VH ++ D+               
Sbjct: 181 LELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHG-------------- 226

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
                        FD     NL +  A++  YS+ G+VE A  +F  +  KD+I W+ +I
Sbjct: 227 -------------FDS----NLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLI 269

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
            GY   N  +EAL LF EM   G  P+ VTMLSV+ ACAHLG +D  + IH+YIDK   G
Sbjct: 270 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKG 329

Query: 383 --GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
                 +  ++IDMYAKCG +E+A +VF  M  +++ SW +MI  FA+HG A  +   F+
Sbjct: 330 VTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFS 389

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500
           +M+   I+P+ +TF+G+L ACSH+G++D GR IF SMT +Y + PK EHYGCM+DL G +
Sbjct: 390 RMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHS 449

Query: 501 NLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560
            L +EA E++ TM   P+ VIW SL+ AC++HG +ELAE  A+ L++++P++  + +LLS
Sbjct: 450 GLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLS 509

Query: 561 NIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLN 620
           NIYA   RW+DV  +R  +  + + K   CS IE+++ V+EF+  D+ H Q  +IY  L 
Sbjct: 510 NIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIYGMLE 569

Query: 621 EVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLR 680
           E+   L+ AG+VPD    L ++E+E K   +  HSEKLA+ +GLIS+K  + + IVKNLR
Sbjct: 570 EMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLR 629

Query: 681 VCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           VC +CH   KL+SK+Y REIV RDRTRFHH++DGVCSC DYW
Sbjct: 630 VCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCSCNDYW 671


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 286/742 (38%), Positives = 437/742 (58%), Gaps = 68/742 (9%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P+ + + +C +L  ++  HAQ++K+    H+ N  L KL+   F + +     L YA+S+
Sbjct: 35  PSLSLLHNCKTLQSLRIIHAQMIKIGL--HNTNYALSKLI--EFCILSPHFEGLPYAISV 90

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F  I  P   + N   R  + S  P  ALK+++ M++ GL  + ++FP +LK+ A+++  
Sbjct: 91  FKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAF 150

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP-------- 185
            EG Q+HG   KLG   D +V T L+ MY   G++ DA  +FDK  +RD+V         
Sbjct: 151 KEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGY 210

Query: 186 -----------------------WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
                                  W+ MI GY + G + E L LF++M  +NV PDE  + 
Sbjct: 211 ASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMV 270

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            ++SAC+++G++  G  VH +I D+                                   
Sbjct: 271 TVVSACAQSGSIELGRQVHLWIDDHGFG-------------------------------S 299

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           NL +  A++  YS+ G++E A  +F+++  KD+I W+ +I GY   N  +EAL LF EM 
Sbjct: 300 NLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML 359

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGS 400
             G  P+ VTMLS++ ACAHLG +D  + IH+YIDK   G      +  ++IDMYAKCG 
Sbjct: 360 RSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGD 419

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E+A +VF  +  +++ SW +MI  FA+HG A  +   F++M+   I P+ +TF+G+L A
Sbjct: 420 IEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSA 479

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSH+G++D GR IF +MT +Y + PK EHYGCM+DL G + L +EA E++  M   P+ V
Sbjct: 480 CSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGV 539

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           IW SL+ AC++HG +EL E  A+ L++++P++ G+ VLLSNIYA   RW +V + R  + 
Sbjct: 540 IWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLN 599

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           ++G+ K   CS IE+++ V+EF+  D+ H +  +IY  L E+   L+ AG+VPD    L 
Sbjct: 600 DKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQ 659

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           ++E+E K   +  HSEKLA+ +GLIS+K  + + IVKNLRVC +CH   KL+SK+Y REI
Sbjct: 660 EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREI 719

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           + RDRTRFHH++DGVCSC DYW
Sbjct: 720 IARDRTRFHHFRDGVCSCNDYW 741


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 272/716 (37%), Positives = 415/716 (57%), Gaps = 38/716 (5%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P K + L    A  S S L   ++ H  I+        ++ +++   L S     T   S
Sbjct: 118 PDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGF----ESDVIVGTALASM---YTKCGS 170

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L  A  +F ++P       N  I   S + +P  AL +F +M   G+  +  +   ++  
Sbjct: 171 LENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPV 230

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            A    L +G Q+H    + G  SD  V  GLV MY  CG +  A  +F++M  RD+  W
Sbjct: 231 CAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASW 290

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +I GY  N    E L  F  M++  ++P+ + +  +L AC+    L  G+ +H + I 
Sbjct: 291 NAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIR 350

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
           +                                   N VV  A+V+ Y++ G V  A  +
Sbjct: 351 SGFE-------------------------------SNDVVGNALVNMYAKCGNVNSAYKL 379

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F++M +K+++ W+A+ISGY+++ HP EAL LF EMQ  G+KPD   ++SV+ ACAH   L
Sbjct: 380 FERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLAL 439

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           +Q ++IH Y  ++ F  ++ V   ++D+YAKCG++ +A+++FERM  ++V+SWT+MI A+
Sbjct: 440 EQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAY 499

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
            IHG   +AL  F+KM++     + + F  +L ACSHAGLVD+G + F  M ++Y + PK
Sbjct: 500 GIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPK 559

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            EHY C+VDL GRA  L EA  +++ M   P+  +WG+L+ ACR+H  IEL E AAK L 
Sbjct: 560 LEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLF 619

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           +LDPD+ G  VLLSNIYA+ +RW+DV +LRK MKE+G+ K+  CS + ++ +V  FL  D
Sbjct: 620 ELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGD 679

Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS 666
           R+H Q++QIY  L  +  +++ AGYVP+ + AL D+E+E K  ++  HSEKLA+ +G+I+
Sbjct: 680 RTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIIN 739

Query: 667 SKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +     IRI+KNLRVC DCHN  K +SK+  REI++RD  RFHH K+G CSC DYW
Sbjct: 740 TSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  275 bits (704), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 154/466 (33%), Positives = 248/466 (53%), Gaps = 43/466 (9%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL+++ +M   G+  D+  F  ++KA      L  G +VH      GF SD  V T L  
Sbjct: 104 ALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALAS 163

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG + +AR +FD+M  RD+V W+ +I GY QNG   E L LF EM+++ ++P+   
Sbjct: 164 MYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSST 223

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           L  ++  C+    L  G+ +H + I + +  D  + + L+ MYA C              
Sbjct: 224 LVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKC-------------- 269

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                            G V  A  +F++M  +D+  W+A+I GY+ N+   EAL  FN 
Sbjct: 270 -----------------GNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNR 312

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQV G+KP+ +TM+SV+ ACAHL  L+Q Q+IH Y  ++ F  +  V NA+++MYAKCG+
Sbjct: 313 MQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGN 372

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           + SA ++FERM ++NV++W ++I+ ++ HG    AL  F +M+ + I P+    + VL A
Sbjct: 373 VNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPA 432

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHY----GCMVDLFGRANLLREALELVETMPFA 516
           C+H   +++G++I       Y I   +E        +VD++ +   +  A +L E MP  
Sbjct: 433 CAHFLALEQGKQIHG-----YTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-E 486

Query: 517 PNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALVLLS 560
            +VV W +++ A  +HG  E  LA F+  Q      DH     +L+
Sbjct: 487 QDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILT 532



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 140/275 (50%), Gaps = 12/275 (4%)

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQM-VEKDLICWSAMISGYAENNHPQEALKLF 338
           L +N V +T  VS  +   Q       F Q  +  + + W   I GY +N    +AL+L+
Sbjct: 56  LRRNKVKTTREVSACANQTQ-------FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLY 108

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            +MQ  G+ PDK+  LSVI AC     L   +++H  I    F  D+ V  A+  MY KC
Sbjct: 109 YQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKC 168

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           GSLE+AR+VF+RM +R+V+SW ++I  ++ +G    AL  F++M+   I PN  T + V+
Sbjct: 169 GSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVM 228

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
             C+H   +++G++I         I         +V+++ +   +  A +L E MP   +
Sbjct: 229 PVCAHLLALEQGKQIHCYAIRS-GIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIR-D 286

Query: 519 VVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPD 551
           V  W +++    ++ +    LA F   Q+  + P+
Sbjct: 287 VASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPN 321


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/732 (39%), Positives = 430/732 (58%), Gaps = 76/732 (10%)

Query: 28  MKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNK 87
           ++  HAQ++K     H+ N  L KL+   F + +     L YA+S+F  I  P   + N 
Sbjct: 3   LRMIHAQMIKTGL--HNTNYALSKLI--EFCVLSPHFDGLPYAISVFETIQEPNLLIWNT 58

Query: 88  FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
             R  + S  P  AL +++ M++ GL  + ++FP +LK+ A+++   EG Q+HG   KLG
Sbjct: 59  MFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLG 118

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP---------------------- 185
           +  D +V T L+ MY   G++ DAR +FD+ S+RD+V                       
Sbjct: 119 YDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFD 178

Query: 186 ---------WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
                    W+ MI GY + G   E L LF+EM  +NV PDE  +  ++SAC+++ ++  
Sbjct: 179 EIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIEL 238

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G  VH +I D+    +  + + LI +Y  C                              
Sbjct: 239 GRQVHSWIDDHGFGSNLKIVNALIDLYIKC------------------------------ 268

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
            G+VE A  +F+ +  KD+I W+ +I GY   N  +EAL LF EM   G  P+ VTMLS+
Sbjct: 269 -GEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSI 327

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA------IIDMYAKCGSLESAREVFER 410
           + ACAHLG ++  + IH+YI+K   G    V NA      +IDMYAKCG +E+A++VF+ 
Sbjct: 328 LPACAHLGAIEIGRWIHVYINKRLKG----VANASSHRTSLIDMYAKCGDIEAAQQVFDS 383

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           +  R++ SW +MI  FA+HG A  A   F++M+   I+P+ +TF+G+L ACSH+G++D G
Sbjct: 384 ILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLG 443

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
           R IF SM  +Y I PK EHYGCM+DL G + L +EA E++ TM   P+ VIW SL+ AC+
Sbjct: 444 RHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACK 503

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
           +HG +EL E  A+ L++++P + G+ VLLSNIYA   RW +V ++R  + ++G+ K   C
Sbjct: 504 MHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGC 563

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
           S IE+++ V+EF+  D+ H +  +IY  L E+   L+ AG+VPD    L ++E+E K   
Sbjct: 564 SSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGA 623

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           +  HSEKLA+ +GLIS+K  + + IVKNLRVC +CH   KL+SK+Y REI+ RDRTRFHH
Sbjct: 624 LRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHH 683

Query: 711 YKDGVCSCKDYW 722
           ++DGVCSC DYW
Sbjct: 684 FRDGVCSCNDYW 695


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 282/727 (38%), Positives = 429/727 (59%), Gaps = 44/727 (6%)

Query: 1   MSTLSQPTKPL---TLPTSTAISS-CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLT- 55
           M+ L+ PT P+    L     +S+  +    +K  HA++L+L   H  Q++ LL L+L  
Sbjct: 1   MTILTSPTSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRL---HLDQDNYLLNLILCC 57

Query: 56  SFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI 115
           +    +T  S L     +FSQ+  P   + N  IR +        A+ ++  M   G   
Sbjct: 58  ALDFGSTNYSKL-----VFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLP 112

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           + F+ P +LKA AR   +  G+++H L  K G+  D FV+T L+ +Y  C    DA  +F
Sbjct: 113 NNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVF 172

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           D +  +++V W+ +I GY  +G F E +  F+++    ++PD   L K+L+AC+R G+ +
Sbjct: 173 DDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCT 232

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            GE +  +I D+ +                                +N+ V+T+++  Y 
Sbjct: 233 SGEWIDRYISDSGMG-------------------------------RNVFVATSLLDMYV 261

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           + G +E A LIF  M EKD++ WS MI GYA N  PQ+AL LF +MQ   +KPD  TM+ 
Sbjct: 262 KCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVG 321

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           V+SACA LG LD        +D+N F  +  +  A+IDMY+KCGS+  A E+F  M+R++
Sbjct: 322 VLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKD 381

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
            + W +M+   +++G A+     F+ ++   I P+  TFIG+L  C+H G V+EGR+ F 
Sbjct: 382 RVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFN 441

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           +M   +++ P  EHYGCMVDL GRA LL EA +L+  MP  PN V+WG+L+  C++H + 
Sbjct: 442 NMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDT 501

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
            LAE   K+L++L+P + G  V LSNIY+ + RW++  ++R +MKE+ I K RACS IE+
Sbjct: 502 HLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEI 561

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
           +  V+EFL  D+SH  +++IY KL+E+  ELK  G+VP     L D+E+EEK   + +HS
Sbjct: 562 DGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHS 621

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ +GLI+S  +  IR+VKNLRVC DCH+ IKL+SK+  REI+IRD  RFH + DG 
Sbjct: 622 EKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGS 681

Query: 716 CSCKDYW 722
           CSC+DYW
Sbjct: 682 CSCRDYW 688


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 281/707 (39%), Positives = 415/707 (58%), Gaps = 66/707 (9%)

Query: 43  HSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHAL 102
           H+ N  L KLL   F + T     L YA+S+F  I  P     N  IR  + S  P  AL
Sbjct: 6   HNTNYALSKLL--DFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISAL 63

Query: 103 KVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162
            +++ M++ GL+ + ++FP + K+ A+++   EG Q+H    K G   D  V T L+ MY
Sbjct: 64  NLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMY 123

Query: 163 GACGKILDARLMFDKMSYRDIVP-------------------------------WSVMID 191
              G + DA  +FD  S+RD+V                                W+ MI 
Sbjct: 124 AQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMIS 183

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           GY + G + E L LF EM   +V+PDE  ++ +LS C+ +GN+  G  +H +I ++    
Sbjct: 184 GYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFG- 242

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
                                          NL +  A++  YS+ G++E A  +F+ + 
Sbjct: 243 ------------------------------SNLKLVNALIDLYSKCGEMERAHGLFEGLQ 272

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
            KD+I W+ +I GYA  NH +EAL +F EM   G  P+ VTMLS++ ACAHLG +D  + 
Sbjct: 273 YKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRW 332

Query: 372 IHLYIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           IH+YIDK   G   +  +  ++IDMYAKCG++E+A +VF+ +  +++ S  +MI  FA+H
Sbjct: 333 IHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMH 392

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G A  A    ++MK + I+P+ +TF+G+L ACSHAGL D GR+IF SMT +Y I PK EH
Sbjct: 393 GRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEH 452

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           YGCM+DL GR+ L +EA EL+ +M   P+ VIWGSL+ AC++H  +EL E  A++L++++
Sbjct: 453 YGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIE 512

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P + G+ VLLSNIYA   RW DV  +R  + ++G+ K   CS IE+++ V+EFL  D+ H
Sbjct: 513 PKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFH 572

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
            Q  +IY+ L E+ S L   G+V D    L ++E+E K   + +HSEKLA+ +GLIS+K 
Sbjct: 573 PQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFGLISTKP 632

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVC 716
            + +RIVKNLRVC +CH   KL+SK+Y REI+ RDR+RFHH+KDG+C
Sbjct: 633 GTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 278/700 (39%), Positives = 413/700 (59%), Gaps = 39/700 (5%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83
           SL   KQ H  +L+L      Q++ L+ LLL S    +   ++  YA  +F+Q P P   
Sbjct: 15  SLHQAKQCHCLLLRLGLH---QDTYLINLLLRS----SLHFAATQYATVVFAQTPHPNIF 67

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE-GMQVHGL 142
           + N  IR +  +   + A+ V+  M   G   D F+FP +LKA  R       G+ +H L
Sbjct: 68  LYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSL 127

Query: 143 GTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202
             K GF  D FV+TGLV +Y   G + DAR +FD++  +++V W+ +I GY ++G F E 
Sbjct: 128 VIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEA 187

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           L LF  +    + PD   L +IL ACSR G+L+ G  +  ++ ++               
Sbjct: 188 LGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGS------------- 234

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
                             + N+ V+T++V  Y++ G +E+AR +FD MVEKD++CWSA+I
Sbjct: 235 ------------------VGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALI 276

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
            GYA N  P+EAL +F EMQ   ++PD   M+ V SAC+ LG L+        +D + F 
Sbjct: 277 QGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFL 336

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            +  +  A+ID YAKCGS+  A+EVF+ MRR++ + + ++I+  A+ G    A   F +M
Sbjct: 337 SNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQM 396

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
               + P+G TF+G+L  C+HAGLVD+G   F+ M++ +++ P  EHYGCMVDL  RA L
Sbjct: 397 VKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGL 456

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
           L EA +L+ +MP   N ++WG+L+  CR+H + +LAE   KQL++L+P + G  VLLSNI
Sbjct: 457 LVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNI 516

Query: 563 YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
           Y+   RW +  ++R S+ ++G+ K   CS +E++  V+EFL  D SH  + +IYEKL  +
Sbjct: 517 YSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESL 576

Query: 623 ISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVC 682
             +L+ AGY P     L D+E+EEK   +  HSEKLA+ + LIS+     IR+VKNLRVC
Sbjct: 577 FKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVC 636

Query: 683 EDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            DCH  IKLVSKV  REI++RD  RFHH+ +G CSC+DYW
Sbjct: 637 GDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCRDYW 676


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 281/706 (39%), Positives = 417/706 (59%), Gaps = 72/706 (10%)

Query: 54  LTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGL 113
           L  FS+ +     L YA+SIF  I  P   + N   R  + +     ALK+++ M++ GL
Sbjct: 2   LIEFSVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGL 61

Query: 114 TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA-- 171
             + +SFP +LK+ A+++ L+EG Q+HG   KLG+  D +V T L+ MY   G++ DA  
Sbjct: 62  LPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHK 121

Query: 172 -----------------------------RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202
                                        R +FD++S +D+V W+ MI GY +   F E 
Sbjct: 122 VFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEA 181

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           L L+++M  +NV+PDE  +  ++SAC+++G++  G  +H +I D+    +  + + LI +
Sbjct: 182 LELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDL 241

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           Y+ C                               G+VE A  +F  + +KD+I W+ +I
Sbjct: 242 YSKC-------------------------------GEVETACGLFQGLAKKDVISWNTLI 270

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
            G+   N  +EAL LF EM   G  P+ VTMLSV+ ACAHLG +D  + IH+YI+K   G
Sbjct: 271 GGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKG 330

Query: 383 GDLRVNNA------IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
               V NA      +IDMYAKCG +E+A++VF+ M  R++ SW +MI  FA+HG A  A 
Sbjct: 331 ----VTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAF 386

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             F+KM+   IDP+ +TF+G+L ACSH+G++D GR IF SM+ +Y I PK EHYGCM+DL
Sbjct: 387 DLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDL 446

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
            G   L +EA E++ TMP  P+ VIW SL+ AC++H  +EL E  A+ L++++P++ G+ 
Sbjct: 447 LGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSY 506

Query: 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           VLLSNIYA   RW  V ++R  + ++GI K   CS IE+++ V+EF+  D+ H +  +IY
Sbjct: 507 VLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIY 566

Query: 617 EKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIV 676
             L E+   ++  G+VPD    L ++E+E K   +  HSEKLA+ +GLIS+K  + + IV
Sbjct: 567 RMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIV 626

Query: 677 KNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KNLRVC +CH   KL+SK+Y REI+ RDRTR H  KDGV SC DYW
Sbjct: 627 KNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 290/726 (39%), Positives = 431/726 (59%), Gaps = 48/726 (6%)

Query: 4   LSQPTKPLTLPTSTAI-------SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTS 56
           LS+PT P   P S  +          +S  H+K  HA +L+    H   N LL  +L  S
Sbjct: 2   LSRPTSP---PISKGLEIKKLILQGFNSFKHLKHLHAHLLRFGLCH--DNYLLNMILRCS 56

Query: 57  FSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTID 116
           F    T      Y   +F QI  P   + N  IR +  +     A++ +  M +EG   +
Sbjct: 57  FDFSDTN-----YTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPN 111

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
            F+FP +LKA AR   L  G+++H L  K GF  D FV+T LV +Y  CG + DA  +FD
Sbjct: 112 NFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFD 171

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
            +  +++V W+ +I GY   G F E +++F  +   N+ PD   + ++LSAC++ G+L+ 
Sbjct: 172 DIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNS 231

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           GE +H+ I                        M+M        +++N+ V T++V  Y++
Sbjct: 232 GEWIHKCI------------------------MEMG-------MVRNVFVGTSLVDMYAK 260

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
            G +E AR +FD M EKD++ W AMI GYA N  P+EA+ LF +MQ   +KPD  T++ V
Sbjct: 261 CGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGV 320

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           +SACA LG L+  + +   +D+N F  +  +  A+ID+YAKCGS+  A EVF+ M+ ++ 
Sbjct: 321 LSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDR 380

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           + W ++I+  A++G  + +   F +++   I P+G TFIG+L  C+HAGLVDEGR  F S
Sbjct: 381 VVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNS 440

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           M   +++ P  EHYGCMVDL GRA LL EA +L+  MP   N ++WG+L+ ACR+H + +
Sbjct: 441 MYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQ 500

Query: 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMN 596
           LAE A KQL++L+P + G  VLLSNIY+ + +W +  ++R SM E+ I K   CS IE++
Sbjct: 501 LAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVD 560

Query: 597 NEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSE 656
             V+EFL  D+ H  +++IY KL+E+  ++K AGYVP     L D+E+EEK   +  HSE
Sbjct: 561 GIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSE 620

Query: 657 KLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVC 716
           KLA+ +GLIS+   + IR+VKNLRVC DCH  IKL+S +  REI +RD  RFH +++G C
Sbjct: 621 KLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSC 680

Query: 717 SCKDYW 722
           SC DYW
Sbjct: 681 SCNDYW 686


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 298/797 (37%), Positives = 432/797 (54%), Gaps = 81/797 (10%)

Query: 1   MSTLSQPTKPLTLPT------------STAISSCSSLTHMKQTHAQ-ILKLSHSHHSQNS 47
           +S L+  +KP  +PT             T +  C ++    Q  +Q IL          S
Sbjct: 3   LSRLNYLSKPFKIPTFTLKPTLTLPILETHLQKCQNIKQFNQILSQMILSGFFKDSFAAS 62

Query: 48  LLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLK 107
            LLK    S  LP    +  Y    IFS I  P   + N  ++     + P  A+ V+  
Sbjct: 63  RLLKF---STELPFININQSY---QIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKF 116

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           ML   +  D +++P + ++ +      +G  +     K+GF SD ++Q  L+ MY  CG 
Sbjct: 117 MLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGN 176

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYF-------------------------------QN 196
           + DAR +FD  S  D+V W+ M+ GY                                + 
Sbjct: 177 LSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKK 236

Query: 197 GLFDEVLNLFEEMKMSNV----------EPDEM---------------------VLSKIL 225
           G  +E   LF EMK  ++          E +EM                     V+  +L
Sbjct: 237 GNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVL 296

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
           SACSR   +  G+ VH  ++   +    +LQ+ LI MY++C  +  A+ LF +    + +
Sbjct: 297 SACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQI 356

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
              +M+SGY + G++E AR +FD M +KD + WSAMISGYA+ +   E L LF EMQ+ G
Sbjct: 357 SWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEG 416

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
            KPD+  ++SVISAC HL  LDQ + IH YI KN    ++ +   +I+MY K G +E A 
Sbjct: 417 TKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDAL 476

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
           EVF+ +  + V +W ++I   A++G    +L  F++MK+  + PN +TF+ VL AC H G
Sbjct: 477 EVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMG 536

Query: 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
           LVDEG   F SM  E+ I P  +HYGCMVDL GRA +L+EA EL+E+MP AP+V  WG+L
Sbjct: 537 LVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGAL 596

Query: 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585
           + AC+ +G+ E  E   ++L++L PDHDG  VLLSNIYA    W DV E+R  M++ G++
Sbjct: 597 LGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVV 656

Query: 586 KERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDE 645
           K   CS IE +  V+EFL  D++H Q + I   L+E+  +LK  GY PD     +D+++E
Sbjct: 657 KTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEE 716

Query: 646 EKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDR 705
           EK   +  HSEKLA+ +GLI+    + IRIVKNLR+C DCH   KL+SK + REIV+RDR
Sbjct: 717 EKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDR 776

Query: 706 TRFHHYKDGVCSCKDYW 722
            RFHH+K G CSC DYW
Sbjct: 777 HRFHHFKQGSCSCMDYW 793


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 278/696 (39%), Positives = 414/696 (59%), Gaps = 39/696 (5%)

Query: 27  HMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSN 86
           H+ Q HAQ++           +    L+T F   +     + YA  +F + P P   + N
Sbjct: 86  HLNQIHAQLV-------VSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWN 138

Query: 87  KFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKL 146
             IR  S  +    A++++ +M   G+  D F+ P +LKA +    L  G +VHG   +L
Sbjct: 139 AIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRL 198

Query: 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLF 206
           GF SD FVQ GLV +Y  CG++  AR++F+ +  R+IV W+ MI GY QNGL  E L +F
Sbjct: 199 GFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIF 258

Query: 207 EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
            +M+  NV+PD + L  +L A +   +L  G+++H  ++   +  +  L  +L  MYA C
Sbjct: 259 GQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKC 318

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
           G                               QV  AR  FDQM   +++ W+AMISGYA
Sbjct: 319 G-------------------------------QVMVARSFFDQMEIPNVMMWNAMISGYA 347

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
           +N +  EA+ LF EM    ++ D +T+ S I ACA +G LD A+ +  YI+K  +  D+ 
Sbjct: 348 KNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVF 407

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
           VN A+IDM+AKCGS++ AREVF+R   ++V+ W++MI  + +HG  ++A+  F  MK   
Sbjct: 408 VNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAG 467

Query: 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
           + PN VTF+G+L AC+H+GLV+EG E+F SM   Y I  +++HY C+VDL GR+  L EA
Sbjct: 468 VCPNDVTFVGLLTACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEA 526

Query: 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566
            + + TMP  P V +WG+L+ AC+++  + L E+AA+QL  LDP + G  V LSN+YA  
Sbjct: 527 YDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASS 586

Query: 567 KRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL 626
           + W  V ++R  M+E+G+ K+   S IE+N ++  F   D+SH +  +I+E+L  +   L
Sbjct: 587 RLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRL 646

Query: 627 KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCH 686
           K AG++P I S L DL  EEK E +  HSE+LA+ YGLIS+   + +RI KNLR C +CH
Sbjct: 647 KEAGFIPHIESVLHDLNQEEKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRACINCH 706

Query: 687 NFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +  KL+SK+  REIV+RD  RFHH+K+GVCSC+DYW
Sbjct: 707 SATKLISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 281/666 (42%), Positives = 422/666 (63%), Gaps = 13/666 (1%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           +L  A S+   IP    R ++  +      H  + A+  +++ML  G   D ++FP +LK
Sbjct: 4   ALSRARSLLDGIPHRRGRAASSSVSG----HGAEEAVAGYVRMLAGGARPDAYTFPSLLK 59

Query: 126 AIARAEGLLEGMQ-----VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
           A A A G           +H    K G  S+    + L+ MY A G    AR + +    
Sbjct: 60  AAAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACL 119

Query: 181 RD----IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
                  V W+ +I G+ ++G F+     F +M  ++     +    +LSAC +  +L  
Sbjct: 120 ATGGGAPVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLL 179

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G  VH+ ++++ V  D  +++ L+ MYA CG MD A  LF+ + ++++   T+++SG  R
Sbjct: 180 GMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVR 239

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
           +GQV+ AR +FD M E+D I W+AMI GY +    ++AL+ F  MQ+C ++ D+ TM+SV
Sbjct: 240 SGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSV 299

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           ++ACA LG L+  +   +Y+ +     D+ V NA+IDMY+KCGS+E A +VF+ M  R+ 
Sbjct: 300 VTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDK 359

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
            +WT++I   A++G    A+  F +M      P+ VTF+GVL AC+HAGLVD+GRE F S
Sbjct: 360 FTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLS 419

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           MT  YNI P   HYGC++D+ GRA  L+EAL+ ++ MP  PN  IWG+L+A+CRV+G  E
Sbjct: 420 MTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSE 479

Query: 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMN 596
           + E AA++LL+LDPD+  A +LLSN+YAK  RW+DV  +R+ + E+GI KE  CS IEMN
Sbjct: 480 IGELAAERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMN 539

Query: 597 NEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSE 656
             ++EF+ ADRSH    +IY KL  V+++L+ AGYVPD+   LV++ +EEK++V+ WHSE
Sbjct: 540 GIIHEFVAADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSE 599

Query: 657 KLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVC 716
           KLA+ + L++S+ +  IRIVKNLR+C DCHN IKL+SK+Y RE+++RDRTRFHH++ G C
Sbjct: 600 KLAVTFALLTSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSC 659

Query: 717 SCKDYW 722
           SCKDYW
Sbjct: 660 SCKDYW 665


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 304/804 (37%), Positives = 438/804 (54%), Gaps = 98/804 (12%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSH------HSQNSLLLKL----LL 54
           S P  PL +       S  S  +  Q H+  LK + S       H Q  L + L     L
Sbjct: 10  SAPPSPLPI-------SIHSFQNTNQYHSPTLKFTQSQPKPNVPHIQQELHINLNETQQL 62

Query: 55  TSFSLPTTTPSSLYY---ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE 111
               + T++  S      AL  +S   A  S +   +I+    ++ P  A K++  M   
Sbjct: 63  HGHFIKTSSNCSYRVPLAALESYSSNAAIHSFLITSYIK----NNCPADAAKIYAYMRGT 118

Query: 112 GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA 171
              +D F  P +LKA       L G +VHG   K GF  D FV   L+ MY   G +  A
Sbjct: 119 DTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALA 178

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE------------- 218
           RL+FDK+  +D+V WS MI  Y ++GL DE L+L  +M +  V+P E             
Sbjct: 179 RLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAEL 238

Query: 219 --MVLSKILSA-------CSRAG---------------NLSYGEAVHE------------ 242
             + L K + A       C ++G               NL+Y   V +            
Sbjct: 239 ADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTA 298

Query: 243 ----FIIDNNVALDAHL------------QSTLITMYANCG---CMDMAKGLFDKVLLKN 283
               +I  NN+     L            + T++++   CG    +++ K L     L+N
Sbjct: 299 MIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGK-LLHAFTLRN 357

Query: 284 -----LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
                LV++TA +  Y + G V  AR +FD    KDL+ WSAMIS YA+NN   EA  +F
Sbjct: 358 GFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIF 417

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
             M  CG++P++ TM+S++  CA  G L+  + IH YIDK    GD+ +  + +DMYA C
Sbjct: 418 VHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANC 477

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G +++A  +F     R++  W +MI+ FA+HG    AL  F +M+   + PN +TFIG L
Sbjct: 478 GDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGAL 537

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
           +ACSH+GL+ EG+ +F  M +E+   PK EHYGCMVDL GRA LL EA EL+++MP  PN
Sbjct: 538 HACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPN 597

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
           + ++GS +AAC++H  I+L E+AAKQ L L+P   G  VL+SNIYA   RW DV  +R++
Sbjct: 598 IAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRA 657

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           MK+ GI+KE   S IE+N  ++EF+  DR H    ++YE ++E+  +L+ AGY PD+   
Sbjct: 658 MKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCV 717

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           L +++ E+K   + +HSEKLA+ YGLIS+     IRIVKNLRVC+DCHN  KL+SK+Y R
Sbjct: 718 LHNIDKEKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGR 777

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EI++RDR RFHH+K+G CSC DYW
Sbjct: 778 EIIVRDRNRFHHFKEGSCSCCDYW 801


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/729 (39%), Positives = 417/729 (57%), Gaps = 46/729 (6%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILK---LSHSHHSQNSLLLKLLLTSF 57
           + T + PT     P        +  +++ Q HA ++K   L+ S  S +SLL        
Sbjct: 5   VPTAALPTPGRAGPAPPRAPLRADPSYLPQLHAALIKSGELTGSAKSFHSLL-------- 56

Query: 58  SLPTTTPSSLYYALSIFSQIPAPP--SRVSNKFIRAISWSHRPKHALKVFLKMLN--EGL 113
                +P+ L YA+S+F   P PP  +   N  +RA   +  P+ AL +F++ML+     
Sbjct: 57  EAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASAC 116

Query: 114 TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
             D+ +    LK+ +R   L  G  V     K G  +D FV + L+ MY +CG +  ARL
Sbjct: 117 PADQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARL 176

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +FD      +V W+ ++  Y +NG + EV+ +F+ M    V  DE+ L  +++AC R G+
Sbjct: 177 VFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGD 236

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
              G+ V   + +  +A +  L + L+ MYA C                           
Sbjct: 237 AKLGKWVAGHVDEEGLARNPKLVTALMDMYAKC--------------------------- 269

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
               G++  AR +FD M  +D++ WSAMISGY + +  +EAL LF+EMQ+  ++P+ VTM
Sbjct: 270 ----GEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTM 325

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
           +SV+SACA LG L+  + +H Y+ +        +  A++D YAKCG ++ A E FE M  
Sbjct: 326 VSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPV 385

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           +N  +WT++I   A +G  R AL  F+ M++  I+P  VTFIGVL ACSH+ LV+EGR  
Sbjct: 386 KNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRH 445

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           F SM  +Y I P+ EHYGCMVDL GRA L+ EA + + TMP  PN VIW +L+++C VH 
Sbjct: 446 FDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHR 505

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
            + + E A KQ++ L+P H G  VLLSNIYA   +W+D   +RK MK+RGI K   CS I
Sbjct: 506 NVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLI 565

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW 653
           E++  V+EF   D  H +  +IY+K+ E+I  +K AGYVP+     +++E+ EK   +  
Sbjct: 566 ELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSH 625

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HSEKLA+ +GL+     + IR+ KNLRVC DCH+  KL+SKVY REIV+RDR  FHH+KD
Sbjct: 626 HSEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKD 685

Query: 714 GVCSCKDYW 722
           G CSC DYW
Sbjct: 686 GTCSCNDYW 694


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 280/727 (38%), Positives = 429/727 (59%), Gaps = 44/727 (6%)

Query: 1   MSTLSQPTKPL---TLPTSTAISS-CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLT- 55
           M+ L+ P+ P+    L     +S+  +    +K  HA++L+L   H  Q++ LL L+L  
Sbjct: 1   MTILTNPSSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRL---HLDQDNYLLNLILCC 57

Query: 56  SFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI 115
           +    +T  S L     +FSQ+  P   + N  IR +        A+ ++  M   G   
Sbjct: 58  ALDFGSTNYSKL-----VFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLP 112

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           + F+ P +LKA AR   +  G+++H L  K G+  D FV+T L+ +Y  C    DA  +F
Sbjct: 113 NNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVF 172

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           D +  +++V W+ +I GY  +G F E +  F+++    ++PD   L K+L+AC+R G+ +
Sbjct: 173 DDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCT 232

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            GE +  +I D+ +                                +N+ V+T+++  Y 
Sbjct: 233 SGEWIDRYISDSGMG-------------------------------RNVFVATSLLDMYV 261

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           + G +E A LIF  M EKD++ WS MI GYA N  PQ+AL LF +MQ   +KPD  TM+ 
Sbjct: 262 KCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVG 321

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           V+SACA LG LD        +D+N F  +  +  A+IDMY+KCGS+  A E+F  M++++
Sbjct: 322 VLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKD 381

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
            + W +M+   +++G A+     F+ ++   I P+  TFIG+L  C+H G V+EGR+ F 
Sbjct: 382 RVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFN 441

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           +M   +++ P  EHYGCMVDL GRA LL EA +L+  MP  PN V+WG+L+  C++H + 
Sbjct: 442 NMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDT 501

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
            LAE   K+L++L+P + G  V LSNIY+ + RW++  ++R +MKE+ I K RACS IE+
Sbjct: 502 HLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEI 561

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
           +  V+EFL  D+SH  +++IY KL+E+  ELK  G+VP     L D+E+EEK   + +HS
Sbjct: 562 DGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHS 621

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ +GLI+S  +  IR+VKNLRVC DCH+ IKL+SK+  REI+IRD  RFH + DG 
Sbjct: 622 EKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGS 681

Query: 716 CSCKDYW 722
           CSC+DYW
Sbjct: 682 CSCRDYW 688


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  543 bits (1400), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 264/620 (42%), Positives = 392/620 (63%), Gaps = 12/620 (1%)

Query: 107 KMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDP----FVQTGLVGMY 162
           K+ +E   +D  S+  IL    +   + E         KL F   P         ++ + 
Sbjct: 197 KLFDESPVLDSVSWNSILAGYVKKGDVEE--------AKLIFDQMPQRNIVASNSMIVLL 248

Query: 163 GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
           G  G++++A  +F++M  +D+V WS +I GY QNG+++E L +F EM  + +  DE+V+ 
Sbjct: 249 GKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVV 308

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            +LSAC+    +  G+ +H  +I   +    +LQ+ LI MY+  G +  A+ LF+     
Sbjct: 309 SVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNL 368

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           + +   +M+SG  + G VE AR +FD M EKD++ WSA+ISGYA+++   E L LF+EMQ
Sbjct: 369 DQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQ 428

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
           +  ++PD+  ++SVISAC HL  LDQ + +H YI KN    ++ +   ++DMY KCG +E
Sbjct: 429 LGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVE 488

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
           +A EVF  M  + V SW ++I   A++G    +L  F++MK+  + PN +TF+GVL AC 
Sbjct: 489 NALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACR 548

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
           H GLVDEGR  FASM  ++ I P  +HYGCMVDL GRA LL EA +L+E+MP AP+V  W
Sbjct: 549 HMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATW 608

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582
           G+L+ AC+ HG+ E+ E   ++L++L PDHDG  VLLSNI+A    W+DV E+R  MK++
Sbjct: 609 GALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQ 668

Query: 583 GILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDL 642
           G++K   CS IE N  V+EFL  D++H   +++   LNE+   LK  GY PD +   +D+
Sbjct: 669 GVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDI 728

Query: 643 EDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVI 702
           ++EEK   +  HSEKLA+ +GL++    + IRI+KNLR+C DCH   KL+SK YAREIV+
Sbjct: 729 DEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVV 788

Query: 703 RDRTRFHHYKDGVCSCKDYW 722
           RDR RFH++K+G CSC DYW
Sbjct: 789 RDRHRFHYFKEGACSCMDYW 808



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/454 (28%), Positives = 220/454 (48%), Gaps = 66/454 (14%)

Query: 147 GFGSDPFVQTGLVGMYGACGKI-LDARL-MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           GF SD F  + L+        I LD  L +FD++   +   W+ M+  Y Q+   ++ L 
Sbjct: 68  GFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALL 127

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           L++ M  +NV PD      ++ AC+       G+ +H+ ++      D ++Q+TLI MYA
Sbjct: 128 LYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYA 187

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV------------- 311
            CG M  A+ LFD+  + + V   ++++GY + G VE+A+LIFDQM              
Sbjct: 188 VCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVL 247

Query: 312 ------------------EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
                             EKD++ WSA+ISGY +N   +EAL +F EM   GM+ D+V +
Sbjct: 248 LGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVV 307

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA----------------- 396
           +SV+SACAHL ++   + IH  + +      + + NA+I MY+                 
Sbjct: 308 VSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHN 367

Query: 397 --------------KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
                         KCGS+E AR +F+ M  ++++SW+++I+ +A H      L  F++M
Sbjct: 368 LDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEM 427

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
           +   I P+    + V+ AC+H   +D+G+ + A +     +         ++D++ +   
Sbjct: 428 QLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKN-GLKVNVILGTTLLDMYMKCGC 486

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           +  ALE+   M     V  W +L+    V+G +E
Sbjct: 487 VENALEVFNGME-EKGVSSWNALIIGLAVNGLVE 519


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 283/728 (38%), Positives = 424/728 (58%), Gaps = 45/728 (6%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILK---LSHSHHSQNSLLLKLLLTSF 57
           + T + PT     P        +   ++ Q HA ++K   L+ S    +SLL        
Sbjct: 5   VPTAALPTPAGAGPAPPHAPLRTDPRYLPQLHAALIKSGELTGSPKCFHSLL-------- 56

Query: 58  SLPTTTPSSLYYALSIFSQIPAPP--SRVSNKFIRAISWSHRPKHALKVFLKMLN-EGLT 114
                +P+ L YA+S+F   P PP  +   N  +RA+  +  P+ AL +F++ML+   + 
Sbjct: 57  EAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVC 116

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
            D+ +    LK+ +R   L  G  +     K G  +D FV + L+ MY +C  +  A+L+
Sbjct: 117 PDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLL 176

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           FD +    +V W+ +I  Y +NG + EV+ +F+ M    V  DE+ L  +++AC R G+ 
Sbjct: 177 FDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDA 236

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             G+ V E++ +                               K L++N  + TA++  Y
Sbjct: 237 KLGKWVAEYVDE-------------------------------KGLVRNRNLMTALIDMY 265

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
           ++ G++  AR +FD M  +D++ WSAMISGY + +  +EAL LF+EMQ+  ++P+ VTM+
Sbjct: 266 AKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMV 325

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           SV+SACA LG L+  + +H YI +      + +  A++D YAKCG ++ A E FE M  +
Sbjct: 326 SVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVK 385

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           N  +WT++I   A +G  R AL  F+ M+  SI+P  VTFIGVL ACSH+ LV+EGR  F
Sbjct: 386 NSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHF 445

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
            SMT +Y I P+ EHYGC+VDL GRA L+ EA + + TMP  PN VIW +L+++C VH  
Sbjct: 446 DSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKN 505

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
           +E+ E A KQ++ L+P H G  +LLSNIYA   +W++   +RK MK+RGI K   CS IE
Sbjct: 506 VEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIE 565

Query: 595 MNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWH 654
           ++  V EF   D  H Q  +IY+K+ E+I  +K AGY+P+     +++++ EK   +  H
Sbjct: 566 LDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHH 625

Query: 655 SEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDG 714
           SEKLA+ +GL+     + IR+ KNLRVC DCH+  KL+SKVY REIV+RDR RFHH+KDG
Sbjct: 626 SEKLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDG 685

Query: 715 VCSCKDYW 722
            CSC DYW
Sbjct: 686 TCSCNDYW 693


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 290/728 (39%), Positives = 434/728 (59%), Gaps = 72/728 (9%)

Query: 26  THMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVS 85
           + ++  HAQ++K     H+ N  L KLL   F + +       YA+S+F  I  P   + 
Sbjct: 2   SSVRXIHAQMIKTGL--HNTNYALSKLL--EFCVVSPHFDGFPYAISVFDTIQEPNLLIW 57

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N   R  + S  P  ALK++L M++ GL  D ++FP +LK+ A+++   EG Q+HG   K
Sbjct: 58  NTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLK 117

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP-------------------- 185
           LGF  D +V T L+ MY   G++ DAR +FD  S+RD+V                     
Sbjct: 118 LGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKL 177

Query: 186 -----------WSVMIDGYFQNGLFDEVLNLFEEMKM-SNVEPDEMVLSKILSACSRAGN 233
                      W+ MI GY + G + E L LF+EM M +NV PDE  +  ++SAC+++ +
Sbjct: 178 FDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDS 237

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           +  G  VH +I D+  A                                NL +  A++  
Sbjct: 238 IELGRHVHSWINDHGFA-------------------------------SNLKIVNALIDL 266

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           YS+ G+VE A  +FD +  KD+I W+ +I GY   N  +EAL LF EM   G  P+ VTM
Sbjct: 267 YSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 326

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN---AIIDMYAKCGSLESAREVFER 410
           LS++ ACAHLG +D  + IH+YI+K   G    V++   ++IDMYAKCG +++A++VF+ 
Sbjct: 327 LSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDS 386

Query: 411 -MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            M  R++ +W +MI+ FA+HG A  A   F++M+   I+P+ +TF+G+L ACSH+G++D 
Sbjct: 387 SMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDL 446

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           GR IF SMT  Y I PK EHYGCM+DL G + L +EA E++ TMP  P+ VIW SL+ AC
Sbjct: 447 GRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKAC 506

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE-R 588
           ++HG +EL E  AK+L++++P + G+ VLLSNIYA   RW +V ++R  + ++G+ K+  
Sbjct: 507 KIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVP 566

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
            CS IE+++ V+EF+  D+ H Q  +IY  L E+   L+ AG+VPD    L ++E+E + 
Sbjct: 567 GCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWRE 626

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
             +  HSEKLA+ +GLIS+K  + + I+KNLRVC++CH   KL+SK+Y REI+ RDRTRF
Sbjct: 627 GALRHHSEKLAIAFGLISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRF 686

Query: 709 HHYKDGVC 716
            H++DGVC
Sbjct: 687 XHFRDGVC 694


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/704 (39%), Positives = 410/704 (58%), Gaps = 38/704 (5%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           I   S L H+K  HA +L+L     +   LL K+L  SF+   T      Y+  I  Q  
Sbjct: 17  IQGFSCLKHLKHIHAALLRLGLDEDTY--LLNKVLRFSFNFGNTN-----YSFRILDQTK 69

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P   + N  IR +  +   + +++++  M  EGL+ D F+FP +LKA AR      G++
Sbjct: 70  EPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVK 129

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H L  K G  +D FV+  L+ +Y  CG I +A  +FD +  ++   W+  I GY   G 
Sbjct: 130 MHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGK 189

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
             E +++F  +    + PD   L ++LSAC R G+L  GE + E+I +N           
Sbjct: 190 CREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENG---------- 239

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
                                +++N+ V+TA+V  Y + G +E AR +FD M+EK+++ W
Sbjct: 240 ---------------------MVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSW 278

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           S+MI GYA N  P+EAL LF +M   G+KPD   M+ V+ +CA LG L+        I+ 
Sbjct: 279 SSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLING 338

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
           N F  +  +  A+IDMYAKCG ++ A EVF  MR+++ + W + I+  A+ G  ++AL  
Sbjct: 339 NEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGL 398

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F +M+   I P+  TF+G+L AC+HAGLV+EGR  F SM   + + P+ EHYGCMVDL G
Sbjct: 399 FGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLG 458

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558
           RA  L EA +L+++MP   N ++WG+L+  CR+H + +L E   K+L+ L+P H G  VL
Sbjct: 459 RAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVL 518

Query: 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEK 618
           LSNIYA   +W++  ++R  M ERG+ K    S IE++  V++FL  D SH  +++IY K
Sbjct: 519 LSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAK 578

Query: 619 LNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKN 678
           L E+  +LK AGYVP     L D+E+EEK   I  HSEKLA+ +GLIS+  +  I +VKN
Sbjct: 579 LGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAPNDKILVVKN 638

Query: 679 LRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LRVC DCH  IK +S++  REI++RD  RFH + DG+CSCKDYW
Sbjct: 639 LRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682


>gi|255552151|ref|XP_002517120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543755|gb|EEF45283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 477

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 280/465 (60%), Positives = 355/465 (76%), Gaps = 18/465 (3%)

Query: 1   MSTLSQPTKPLTLPTST----------AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLL 50
           M+T++ PT PL L ++T          + SS +SL ++KQ HAQIL+ + S      L+L
Sbjct: 4   MTTITFPTIPLPLNSTTIGTPLIPFLSSSSSSTSLYYLKQVHAQILRSNLSPSIILKLIL 63

Query: 51  KLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLN 110
               +S S          YALS+F+ IP P   +SNK +RA+S S +P+  L V+ K+  
Sbjct: 64  SSSSSSISSLN-------YALSVFTHIPTPHPTLSNKLLRALSRSSKPETVLLVYQKIRE 116

Query: 111 EGL-TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL 169
           +GL  +D+FSFP ILKA A+   L +GM++HG+  KL F  DPF+QTGL+GMY  CGKIL
Sbjct: 117 DGLFGLDKFSFPFILKAAAKIAALNDGMEIHGVLAKLDFYKDPFLQTGLMGMYVGCGKIL 176

Query: 170 DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229
           +ARL+FDKMSYRD+V WS MI+GY+Q G FD+ L LFEEM+ SNVEPD+MVLS I+SAC+
Sbjct: 177 EARLVFDKMSYRDVVTWSTMINGYYQGGHFDDALQLFEEMRSSNVEPDKMVLSTIISACA 236

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
           RA NL YG+ VH+ II+NN ALD HL+S LI++YA CGCMDMAK LF  +  +NLVVST 
Sbjct: 237 RAKNLGYGKEVHDLIIENNFALDPHLESGLISLYAGCGCMDMAKELFTNMSSRNLVVSTT 296

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
           MVSGY + G++EDARLIF+QM EKDLICWS MISGYAE++ PQEAL LFNEMQ  G++PD
Sbjct: 297 MVSGYLKVGRIEDARLIFNQMDEKDLICWSIMISGYAESDQPQEALHLFNEMQFLGIEPD 356

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           +VTMLSVISACAHLGVLDQA+RIH+++DKN FG  L VNNA+IDMYAKCG LE+AR VFE
Sbjct: 357 EVTMLSVISACAHLGVLDQAKRIHMFVDKNGFGKALSVNNALIDMYAKCGCLEAARAVFE 416

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           +M+ RNVISWTSMINAFAIHGDA +AL +F++MK+E+++PN VTF
Sbjct: 417 KMQIRNVISWTSMINAFAIHGDANSALNYFHQMKEENVEPNAVTF 461



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 145/284 (51%), Gaps = 33/284 (11%)

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           K+  + T ++  Y   G++ +ARL+FD+M  +D++ WS MI+GY +  H  +AL+LF EM
Sbjct: 157 KDPFLQTGLMGMYVGCGKILEARLVFDKMSYRDVVTWSTMINGYYQGGHFDDALQLFEEM 216

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
           +   ++PDK+ + ++ISACA    L   + +H  I +N F  D  + + +I +YA CG +
Sbjct: 217 RSSNVEPDKMVLSTIISACARAKNLGYGKEVHDLIIENNFALDPHLESGLISLYAGCGCM 276

Query: 402 ESAREVFERMRRRNV-------------------------------ISWTSMINAFAIHG 430
           + A+E+F  M  RN+                               I W+ MI+ +A   
Sbjct: 277 DMAKELFTNMSSRNLVVSTTMVSGYLKVGRIEDARLIFNQMDEKDLICWSIMISGYAESD 336

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
             + AL  FN+M+   I+P+ VT + V+ AC+H G++D+ + I     ++          
Sbjct: 337 QPQEALHLFNEMQFLGIEPDEVTMLSVISACAHLGVLDQAKRIHM-FVDKNGFGKALSVN 395

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
             ++D++ +   L  A  + E M    NV+ W S++ A  +HG+
Sbjct: 396 NALIDMYAKCGCLEAARAVFEKMQIR-NVISWTSMINAFAIHGD 438



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 115/231 (49%), Gaps = 5/231 (2%)

Query: 321 MISGYAENNHPQEALKLFNEMQVCGM-KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379
           ++   + ++ P+  L ++ +++  G+   DK +   ++ A A +  L+    IH  + K 
Sbjct: 94  LLRALSRSSKPETVLLVYQKIREDGLFGLDKFSFPFILKAAAKIAALNDGMEIHGVLAKL 153

Query: 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFF 439
            F  D  +   ++ MY  CG +  AR VF++M  R+V++W++MIN +   G   +AL  F
Sbjct: 154 DFYKDPFLQTGLMGMYVGCGKILEARLVFDKMSYRDVVTWSTMINGYYQGGHFDDALQLF 213

Query: 440 NKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF-ASMTNEYNIPPKYEHYGCMVDLFG 498
            +M+  +++P+ +    ++ AC+ A  +  G+E+    + N + + P  E    ++ L+ 
Sbjct: 214 EEMRSSNVEPDKMVLSTIISACARAKNLGYGKEVHDLIIENNFALDPHLE--SGLISLYA 271

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
               +  A EL   M  + N+V+  ++++     G IE A     Q+ + D
Sbjct: 272 GCGCMDMAKELFTNMS-SRNLVVSTTMVSGYLKVGRIEDARLIFNQMDEKD 321


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/748 (38%), Positives = 415/748 (55%), Gaps = 77/748 (10%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS-SLYYALS 72
           P    ++ C  +  +KQ H+ I+K        N+L  +  L  F     +PS  L YALS
Sbjct: 27  PHLNLLAKCPDIPSLKQIHSLIIKSG----LHNTLFAQSKLIEFC--ALSPSRDLSYALS 80

Query: 73  IFSQIPAPPSRVS--NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARA 130
           +F  I   P  +   N  IRA S +  P  +L +F +ML+ GL  +  +FP + K+ A++
Sbjct: 81  LFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKS 140

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD-------- 182
           +   E  Q+H    KL     P V T L+ MY   G++  ARL+FDK + RD        
Sbjct: 141 KATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALI 200

Query: 183 -----------------------IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
                                  +V W+ MI GY Q+G F+E L  F  M+ ++V P++ 
Sbjct: 201 TGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQS 260

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
            +  +LSAC    +L  G+ +  ++ D                                 
Sbjct: 261 TMVSVLSACGHLRSLELGKWIGSWVRDRGFG----------------------------- 291

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
             KNL +  A+V  YS+ G++  AR +FD M +KD+I W+ MI GY   +  +EAL LF 
Sbjct: 292 --KNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFE 349

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN-----AIIDM 394
            M    + P+ VT L+V+ ACA LG LD  + +H YIDKN   G   VNN     +II M
Sbjct: 350 VMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKN-LKGTGNVNNVSLWTSIIVM 408

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           YAKCG +E A +VF  M  R++ SW +MI+  A++G A  AL  F +M +E   P+ +TF
Sbjct: 409 YAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITF 468

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           +GVL AC+ AG V+ G   F+SM  +Y I PK +HYGCM+DL  R+    EA  L+  M 
Sbjct: 469 VGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNME 528

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
             P+  IWGSL+ ACR+HG++E  E+ A++L +L+P++ GA VLLSNIYA   RW DV +
Sbjct: 529 MEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAK 588

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           +R  + ++G+ K   C+ IE++  V+EFL  D+ H Q++ I+  L+EV   L+  G+VPD
Sbjct: 589 IRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPD 648

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
               L D+++E K   +  HSEKLA+ +GLIS+K  S IRIVKNLRVC +CH+  KL+SK
Sbjct: 649 TSEVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISK 708

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           ++ REI+ RDR RFHH+KDG CSC D W
Sbjct: 709 IFNREIIARDRNRFHHFKDGFCSCNDRW 736


>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
 gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
          Length = 572

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 263/552 (47%), Positives = 372/552 (67%), Gaps = 10/552 (1%)

Query: 76  QIPAPPS------RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIA 128
           QIP+PP+      R     IRA + +  P+  L     +   GL      + P +L++ A
Sbjct: 23  QIPSPPTTHLDPDRAYLATIRAAATT--PRLVLAACACLRRTGLPPPGPRALPALLRSAA 80

Query: 129 RAEGLLEGMQ-VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
           R  G    ++  H L  ++G   D FV+T LVG Y ACG + DAR +FD M+ RD+V W 
Sbjct: 81  RCVGAGAYVRGAHALAFRVGSLDDGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSWG 140

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
           VM+D Y Q   + E L  F +MK S V  D+++L+ +LSAC    +L  G+++H +++ +
Sbjct: 141 VMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVS 200

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
           ++ ++AHL S LI +YA+C  M+MA+ L++ +  K+LV STAMV GY+R  + E AR IF
Sbjct: 201 DILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIF 260

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
           D M EKD++ WSAMISGYA++N P EAL LFN+MQ CG++PD+VTMLSVISACA+LG LD
Sbjct: 261 DGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLD 320

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           +A+ IH +I  N     L + NA+IDM+AKCG +  A  +F  M ++NVI+WTSMI AFA
Sbjct: 321 KAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFA 380

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
           +HGD ++AL  F +M++E ++PN VTF+ +LYAC HAGLV EGR +F+SM  +Y I PK+
Sbjct: 381 MHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKH 440

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
           EHYGCMVDL GRA L++EA+ L+E+M   PNV +WGSL+AAC +HG+++L  FAAK++LQ
Sbjct: 441 EHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWMHGDLKLGAFAAKKILQ 500

Query: 548 LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
           LDP+HDGA VLLS IY K     D  E+R  MK +G+ KE   S +++N   +EF     
Sbjct: 501 LDPNHDGASVLLSKIYMKSDNLNDAQEVRDVMKLQGVSKETGLSWMDLNEPFHEFTAGGE 560

Query: 608 SHKQTDQIYEKL 619
            + + D+I++KL
Sbjct: 561 KYPENDKIFQKL 572



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 79/173 (45%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           IF  +P       +  I   + S++P  AL +F  M   G+  D  +   ++ A A    
Sbjct: 259 IFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGS 318

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L +   +H      G      +   L+ M+  CG I  A  +F++M  ++++ W+ MI  
Sbjct: 319 LDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITA 378

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           +  +G     L LFE+M+   VEP+E+    +L AC  AG +  G ++   ++
Sbjct: 379 FAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMV 431


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 278/751 (37%), Positives = 417/751 (55%), Gaps = 77/751 (10%)

Query: 1   MSTLSQPTK---PLTLPT-STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTS 56
           M  +S+PT    PLT       I   S+ T   Q  +   +  H  H             
Sbjct: 3   MPLVSKPTSLLLPLTFQKLKQPIPPPSTFTKTPQNPSPQHQNKHQKH------------- 49

Query: 57  FSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWS---HRPKHALKVFLKMLNEGL 113
              P+ TP++ +  L    Q+ A  +R      + +S+S     P++AL  +  M    +
Sbjct: 50  ---PSFTPNN-HLCLDQTQQLHAHITRTHFNHAQQVSFSPFESHPRYALNTYTYMRKLDI 105

Query: 114 TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
            +D F  P +LKA ++      G ++HG   K G  SD FV   L+ MY  CG ++ ARL
Sbjct: 106 EVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARL 165

Query: 174 MFDKMSYRDIVPWSVMID----------------------GYFQNGLFDEVLNLFEEMKM 211
           +FDKMS RD+V WS MI                       GY +    +E   LF  M  
Sbjct: 166 LFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIE 225

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
            NV P+++ +  ++ +C   G +  G+ +H +I+ N   +                    
Sbjct: 226 ENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGM-------------------- 265

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
                      +L ++TA+V  Y + G++  AR IFD M  KD++ W+AMIS YA+ N  
Sbjct: 266 -----------SLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCI 314

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
             A +LF +M+  G++P+++TM+S++S CA  G LD  +  H YIDK     D+ +  A+
Sbjct: 315 DYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTAL 374

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           IDMYAKCG +  A+ +F     R++ +W  M+  + +HG    AL  F +M+   + PN 
Sbjct: 375 IDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPND 434

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
           +TFIG L+ACSHAGLV EG+ +F  M +++ + PK EHYGCMVDL GRA LL EA +++E
Sbjct: 435 ITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIE 494

Query: 512 TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
           +MP  PN+ IWG+++AAC++H    + E AA++LL L+P + G  VL+SNIYA   RW D
Sbjct: 495 SMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWND 554

Query: 572 VGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY 631
           V  +RK++K+ GI KE   S IE+N  V++F   D +H   ++I E L E+  +LK AGY
Sbjct: 555 VAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGY 614

Query: 632 VPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKL 691
           +PD    L ++++EEK   + +HSEKLA+ +GLIS+   + IR+VKNLR+C+DCH   KL
Sbjct: 615 LPDTSVVLHNIDEEEKETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKL 674

Query: 692 VSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +SK+Y R I++RDR RFHH+++G CSC  YW
Sbjct: 675 LSKIYKRVIIVRDRNRFHHFREGSCSCGGYW 705


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/653 (38%), Positives = 394/653 (60%), Gaps = 32/653 (4%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P       N  I   S +   K AL++ L+M +EG   D  +   +L A A 
Sbjct: 201 AYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAAD 260

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L+ G  +HG   + GF     + T L  MY  CG +  ARL+FD M  + +V W+ M
Sbjct: 261 VGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSM 320

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           +DGY QNG  ++ + +FE+M    ++P  + + + L AC+  G+L  G+ VH+F+   N+
Sbjct: 321 MDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNL 380

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             D  + ++LI+MY+ C                                +V+ A  IF+ 
Sbjct: 381 GSDISVMNSLISMYSKCK-------------------------------RVDIASDIFNN 409

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           +  +  + W+AMI GYA+N    EAL  F+EM+  GMKPD  TM+SVI A A L V   A
Sbjct: 410 LNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHA 469

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + IH  I ++    ++ V  A++DMY+KCG++  AR++F+ +  R+VI+W +MI+ +  H
Sbjct: 470 KWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTH 529

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G  R AL  F+KMK  +++PN +T++ V+ ACSH+GLVDEG   F SM  +Y + P  +H
Sbjct: 530 GLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDH 589

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           YG MVDL GRA  ++EA + +E MP +P + ++G+++ AC++H  IE+ E AAK+L +L+
Sbjct: 590 YGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELN 649

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           PD  G  VLL+NIYA   +W  V E+RK+M+++G+ K   CS +E+ NEV+ F +   +H
Sbjct: 650 PDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTH 709

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
            Q+ +IY  L E++ E+K AGYVPD  + ++D+ED+ + +++  HSEKLA+ +GL+++  
Sbjct: 710 PQSKRIYAFLEELVYEIKAAGYVPDT-NLILDVEDDVQEQLLNSHSEKLAIAFGLLNTSP 768

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + I + KNLRVC DCHN  K +S V  REI++RD  RFHH+K+G+CSC DYW
Sbjct: 769 GTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  209 bits (533), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 156/596 (26%), Positives = 271/596 (45%), Gaps = 86/596 (14%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P+     P +  +  C+S   MK+ H QI+ L   +   N  L +  L S     +   S
Sbjct: 44  PSHVYKHPAAVLLELCTS---MKELH-QIIPLVIKNGLYNEHLFQTKLVSL---FSKYGS 96

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           +  A  +F  I      + +  ++  + +   + AL    +M  + +    ++F  +LK 
Sbjct: 97  INEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKV 156

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
                 L  G ++HG      F ++ F  TG+V MY  C +I DA  MFD+M  RD+V W
Sbjct: 157 CGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSW 216

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +I G+ QNG   + L L   M+     PD + L  +L A +  G L  G+++H + I 
Sbjct: 217 NTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIR 276

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
              A   ++ + L  MY+ CG ++ A+ +FD +  K +V   +M+ GY + G+ E A  +
Sbjct: 277 AGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAV 336

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F++M+E+                               G+ P  VT++  + ACA LG L
Sbjct: 337 FEKMLEE-------------------------------GIDPTGVTIMEALHACADLGDL 365

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           ++ + +H ++D+   G D+ V N++I MY+KC  ++ A ++F  +  R  +SW +MI  +
Sbjct: 366 ERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGY 425

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC------------------------- 461
           A +G    AL  F++MK   + P+  T + V+ A                          
Sbjct: 426 AQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNI 485

Query: 462 ----------SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
                     S  G +   R++F  +++ + I      +  M+D +G   L R AL+L +
Sbjct: 486 FVTTALVDMYSKCGAIHMARKLFDMISDRHVIT-----WNAMIDGYGTHGLGRAALDLFD 540

Query: 512 TM---PFAPNVVIWGSLMAACRVHGEIE--LAEFAA-KQLLQLDP--DHDGALVLL 559
            M      PN + + S+++AC   G ++  L  F + KQ   L+P  DH GA+V L
Sbjct: 541 KMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDL 596


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 262/622 (42%), Positives = 377/622 (60%), Gaps = 23/622 (3%)

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC----GKILDARLMFDK 177
           P L      + +    Q+H    K G   +P +Q  ++     C    G +  AR +FD 
Sbjct: 16  PPLSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSF--CCSREFGDMCYARQLFDT 73

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           +    +  W++M  GY +       ++L+ EM   NV+PD      +    +R+  L  G
Sbjct: 74  IPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLG 133

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR- 296
             +H  ++   +  +    + LI MY+ CG +DMA+G+FD     ++V   AM+SGY+R 
Sbjct: 134 RELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRI 193

Query: 297 ----------------AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                            GQV+ AR  F +M E+D + W+AMI GY   N  +EAL LF E
Sbjct: 194 KKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFRE 253

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQ   +KPD+ TM+SV++ACA LG L+  + I  YIDKN    D  V NA+IDMY KCG+
Sbjct: 254 MQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGN 313

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E A  +F  + +R+  +WT+M+   AI+G    AL  F++M   S+ P+ VT++GVL A
Sbjct: 314 VEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSA 373

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           C+H G+VDEG++ FASMT  + I P   HYGCMVDL G+A  L+EA E+++ MP  PN +
Sbjct: 374 CTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSI 433

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           +WG+L+ ACR+H + E+AE A +Q+L+L+P++    VL  NIYA   +W  + ELR+ M 
Sbjct: 434 VWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMM 493

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           +RGI K   CS IEMN  V+EF+  D+SH QT +IY KLN++ S+LK AGY P+     +
Sbjct: 494 DRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFL 553

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D+ +E+K   +  HSEKLA+ +GLI+S     IRIVKNLR+C DCH+  KLVSKVY RE+
Sbjct: 554 DIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREV 613

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           ++RDRTRFHH++ G CSCKDYW
Sbjct: 614 IVRDRTRFHHFRHGSCSCKDYW 635



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 133/525 (25%), Positives = 225/525 (42%), Gaps = 96/525 (18%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHS--QNSLLLKLLLTSFSLPTT 62
           SQ +     P  +   +C S+ H+KQ H++ +K     +   QN +L       F     
Sbjct: 7   SQSSPVTENPPLSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFG---- 62

Query: 63  TPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
               + YA  +F  IP P     N   +  S    PK  + ++L+ML   +  D +++P 
Sbjct: 63  ---DMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPF 119

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           + K   R+  L  G ++H    K G  S+ F    L+ MY  CG I  AR +FD     D
Sbjct: 120 LFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSD 179

Query: 183 IVPWSV------------------------------------------------MIDGYF 194
           +V W+                                                 MIDGY 
Sbjct: 180 VVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYL 239

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           +   + E L LF EM+ S ++PDE  +  +L+AC++ G L  GE +  +I  N V  D  
Sbjct: 240 RLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTF 299

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           + + LI MY  CG ++MA  +F+ +  ++    TAMV G +                   
Sbjct: 300 VGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLA------------------- 340

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
                  I+G  E     EAL +F++M    + PD+VT + V+SAC H G++D+ ++   
Sbjct: 341 -------INGCGE-----EALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFA 388

Query: 375 YID-KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDA 432
            +  ++    ++     ++D+  K G L+ A E+ + M  + N I W +++ A  IH DA
Sbjct: 389 SMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDA 448

Query: 433 RNALIFFNKMKDESIDP-NGVTFI---GVLYACSHAGLVDEGREI 473
             A     ++ +  ++P NG  ++    +  AC+    + E R++
Sbjct: 449 EMAERAIEQILE--LEPNNGAVYVLQCNIYAACNKWDKLRELRQV 491


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/604 (42%), Positives = 379/604 (62%), Gaps = 3/604 (0%)

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC--GKILDARLMFDKMS 179
           PIL+ ++  + L +  Q+H      G  SD FV + ++        G I  AR +F ++ 
Sbjct: 37  PILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIR 96

Query: 180 YRDIVPWSVMIDGY-FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
             DI   + +I  Y F     D V+   E  + S V PD      +L ACS   +L  GE
Sbjct: 97  KPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGE 156

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
           A+H  +     + +  + + L+ MYA+CG ++ A  +FD+    +      M+ GY + G
Sbjct: 157 AIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCG 216

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
             + AR +F+ M ++D++ WS MI+GY + +  +E L LF +M    ++P++  +++ +S
Sbjct: 217 VFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALS 276

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           ACAHLG ++Q Q I  Y+++      +R+  A+IDMY+KCGS+E A EVF +M+ +NV++
Sbjct: 277 ACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLA 336

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           W++MIN  AI+G  ++AL  F++M+ + + PN VTFIG+L ACSH+ LVDEG   F SMT
Sbjct: 337 WSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMT 396

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
           + Y + P   H+ CMVDL+GRA +L +A  ++++MPF PN  IWG+L+ ACR+HG+ EL 
Sbjct: 397 SIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELG 456

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
           E   K+LL+LDP+H G  VLLSNIYA   RW  V ELR+ M+ER + K   CS I++ + 
Sbjct: 457 EQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDT 516

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           ++EF+  D SH Q + IY KL E+  ELK AGY PD    L+D+++EEK   +  HSEKL
Sbjct: 517 IHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKL 576

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+ +GLI +   + IRI KNLRVC DCH+  KL+SK+Y REI++RDR RFHH++DG CSC
Sbjct: 577 AIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSC 636

Query: 719 KDYW 722
            D+W
Sbjct: 637 MDFW 640



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 136/463 (29%), Positives = 218/463 (47%), Gaps = 74/463 (15%)

Query: 7   PTKPL--TLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP 64
           PT  L    P    +SSC +L  + Q HAQ +  +    S N +  ++L    S    +P
Sbjct: 28  PTPQLLCKYPILRHLSSCKTLKDLTQIHAQTI--TTGIFSDNFVASRIL----SFAALSP 81

Query: 65  -SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPP 122
             S+ YA  +F +I  P   ++N  IRA ++S  P  A+  + +M    +   D  +FP 
Sbjct: 82  HGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPL 141

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK----- 177
           +LKA +    L  G  +H    KLG+ S+  V   LV MY +CG I  A L+FD+     
Sbjct: 142 LLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECD 201

Query: 178 --------------------------MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
                                     M  RD+V WSVMI+GY Q   F E L LF++M  
Sbjct: 202 GASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMG 261

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
             +EP+E VL   LSAC+  G +  G+ +  ++   NV L   L + LI MY+ CG ++ 
Sbjct: 262 EKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVER 321

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
           A  +F K+  KN++  +AM++G +  GQ +D                             
Sbjct: 322 ALEVFHKMKEKNVLAWSAMINGLAINGQGKD----------------------------- 352

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA-QRIHLYIDKNAFGGDLRVNNA 390
             AL LF++M++ G+KP++VT + +++AC+H  ++D+     H          +   +  
Sbjct: 353 --ALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCC 410

Query: 391 IIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDA 432
           ++D+Y + G L+ A+ V + M  + N   W +++NA  IHGD 
Sbjct: 411 MVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDT 453


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/653 (38%), Positives = 392/653 (60%), Gaps = 32/653 (4%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P       N  I   S +   K AL++ L+M +EG   D  +   +L A A 
Sbjct: 201 AYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAAD 260

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L+ G  +HG   + GF     + T L  MY  CG +  ARL+FD M  + +V W+ M
Sbjct: 261 VGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSM 320

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           +DGY QNG  ++ + +FE+M    ++P  + + + L AC+  G+L  G+ VH+F+   N+
Sbjct: 321 MDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNL 380

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             D  + ++LI+MY+ C                                +V+ A  IF+ 
Sbjct: 381 GSDISVMNSLISMYSKCK-------------------------------RVDIASDIFNN 409

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           +  +  + W+AMI GYA+N    EAL  F+EM+  GMKPD  TM+SVI A A L V   A
Sbjct: 410 LNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHA 469

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + IH  I ++    ++ V  A++DMY+KCG++  AR++F+ +  R+VI+W +MI+ +  H
Sbjct: 470 KWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTH 529

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G  R AL  F+KMK  +++PN +T++ V+ ACSH+GLVDEG   F SM  +Y + P  +H
Sbjct: 530 GLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDH 589

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           YG MVDL GRA  ++EA + +E MP +P + ++G+   AC++H  IE+ E AAK+L +L+
Sbjct: 590 YGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELN 649

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           PD  G  VLL+NIYA   +W  V E+RK+M+++G+ K   CS +E+ NEV+ F +   +H
Sbjct: 650 PDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTH 709

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
            Q+ +IY  L E++ E+K AGYVPD  + ++D+ED+ + +++  HSEKLA+ +GL+++  
Sbjct: 710 PQSKRIYAFLEELVYEIKAAGYVPDT-NLILDVEDDVQEQLLNSHSEKLAIAFGLLNTSP 768

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + I + KNLRVC DCHN  K +S V  REI++RD  RFHH+K+G+CSC DYW
Sbjct: 769 GTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 156/596 (26%), Positives = 271/596 (45%), Gaps = 86/596 (14%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P+     P +  +  C+S   MK+ H QI+ L   +   N  L +  L S     +   S
Sbjct: 44  PSHVYKHPAAVLLELCTS---MKELH-QIIPLVIKNGLYNEHLFQTKLVSL---FSKYGS 96

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           +  A  +F  I      + +  ++  + +   + AL    +M  + +    ++F  +LK 
Sbjct: 97  INEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKV 156

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
                 L  G ++HG      F ++ F  TG+V MY  C +I DA  MFD+M  RD+V W
Sbjct: 157 CGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSW 216

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +I G+ QNG   + L L   M+     PD + L  +L A +  G L  G+++H + I 
Sbjct: 217 NTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIR 276

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
              A   ++ + L  MY+ CG ++ A+ +FD +  K +V   +M+ GY + G+ E A  +
Sbjct: 277 AGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAV 336

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F++M+E+                               G+ P  VT++  + ACA LG L
Sbjct: 337 FEKMLEE-------------------------------GIDPTGVTIMEALHACADLGDL 365

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           ++ + +H ++D+   G D+ V N++I MY+KC  ++ A ++F  +  R  +SW +MI  +
Sbjct: 366 ERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGY 425

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC------------------------- 461
           A +G    AL  F++MK   + P+  T + V+ A                          
Sbjct: 426 AQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNI 485

Query: 462 ----------SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
                     S  G +   R++F  +++ + I      +  M+D +G   L R AL+L +
Sbjct: 486 FVTTALVDMYSKCGAIHMARKLFDMISDRHVIT-----WNAMIDGYGTHGLGRAALDLFD 540

Query: 512 TM---PFAPNVVIWGSLMAACRVHGEIE--LAEFAA-KQLLQLDP--DHDGALVLL 559
            M      PN + + S+++AC   G ++  L  F + KQ   L+P  DH GA+V L
Sbjct: 541 KMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDL 596


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 262/688 (38%), Positives = 398/688 (57%), Gaps = 35/688 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F+++P   +      +  ++ + R   A+K  L M  +G T  +F+   +L + A 
Sbjct: 117 ARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAV 176

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD------- 182
            +    G +VH    KLG GS   V   ++ MYG CG    A  +F++M  R        
Sbjct: 177 TQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAM 236

Query: 183 ------------------------IVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPD 217
                                   IV W+ MI GY QNGL  + L LF  M   S++ PD
Sbjct: 237 VSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPD 296

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           E  ++ +LSAC+  GN+  G+ VH +I+   +A ++ + + LI+ YA  G ++ A+ + D
Sbjct: 297 EFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMD 356

Query: 278 KVLLK--NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           + +    N++  TA++ GY + G +E AR +F  M  +D++ W+AMI GY +N    EA+
Sbjct: 357 QSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAI 416

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
            LF  M  CG +P+  T+ +V+S CA L  LD  ++IH    ++       V+NAII MY
Sbjct: 417 DLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMY 476

Query: 396 AKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           A+ GS   AR +F+++  R+  I+WTSMI A A HG    A+  F +M    ++P+ +T+
Sbjct: 477 ARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITY 536

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           +GVL ACSHAG V+EG+  +  + NE+ I P+  HY CMVDL  RA L  EA E +  MP
Sbjct: 537 VGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMP 596

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
             P+ + WGSL++ACRVH   ELAE AA++LL +DP++ GA   ++N+Y+   RW D   
Sbjct: 597 VEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAAR 656

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           + K+ KE+ + KE   S   + ++++ F   D  H Q D +Y     +  E+K AG+VPD
Sbjct: 657 IWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPD 716

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
           + S L D++DE K E++  HSEKLA+ +GLIS+ + + +R++KNLRVC DCH  IK +SK
Sbjct: 717 LQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISK 776

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           V  REI++RD TRFHH++DG+CSCKDYW
Sbjct: 777 VTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 212/435 (48%), Gaps = 37/435 (8%)

Query: 153 FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS 212
           F    L+ M+   G++ DAR +F +M  RD V W+VM+ G  + G F E +    +M   
Sbjct: 99  FTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTAD 158

Query: 213 NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
              P +  L+ +LS+C+     + G  VH F++   +     + ++++ MY  CG  + A
Sbjct: 159 GFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETA 218

Query: 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
             +F+++ ++++    AMVS  +  G+++ A  +F+ M  + ++ W+AMI+GY +N    
Sbjct: 219 STVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDA 278

Query: 333 EALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           +ALKLF+ M     M PD+ T+ SV+SACA+LG +   +++H YI +     + +V NA+
Sbjct: 279 KALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNAL 338

Query: 392 IDMYAKCGS---------------------------------LESAREVFERMRRRNVIS 418
           I  YAK GS                                 +ESARE+F  M  R+V++
Sbjct: 339 ISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVA 398

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           WT+MI  +  +G    A+  F  M     +PN  T   VL  C+    +D G++I     
Sbjct: 399 WTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAI 458

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
               +         ++ ++ R+     A  + + + +    + W S++ A   HG+ E A
Sbjct: 459 RSL-LERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEA 517

Query: 539 EFAAKQLLQ--LDPD 551
               +++L+  ++PD
Sbjct: 518 VGLFEEMLRAGVEPD 532



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 144/292 (49%), Gaps = 38/292 (13%)

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA----NCGCMDMAKGLFD 277
           +++L  C  A N   G A+H   +   +   A+L + L++ Y       G +  A+ LFD
Sbjct: 30  ARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFD 89

Query: 278 KVLL--KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           ++ L  +N+    +++S ++++G++ DAR +F +M E+D + W+ M+ G        EA+
Sbjct: 90  EIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAI 149

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           K   +M   G  P + T+ +V+S+CA        +++H ++ K   G  + V N++++MY
Sbjct: 150 KTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMY 209

Query: 396 AKCGSLESAREVFERMRRRNV-------------------------------ISWTSMIN 424
            KCG  E+A  VFERM  R+V                               +SW +MI 
Sbjct: 210 GKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIA 269

Query: 425 AFAIHGDARNALIFFNKMKDE-SIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
            +  +G    AL  F++M  E S+ P+  T   VL AC++ G V  G+++ A
Sbjct: 270 GYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHA 321


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 270/685 (39%), Positives = 399/685 (58%), Gaps = 35/685 (5%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F+Q+P   +      +  ++ + R   A+K FL M+ EGL   +F    +L + A  E 
Sbjct: 119 VFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEA 178

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL------------------- 173
              G +VH    KLG  S   V   ++ MYG CG    AR                    
Sbjct: 179 RGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSL 238

Query: 174 ------------MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMV 220
                       MF+ M  R IV W+ +I GY QNGL D  L  F  M   S++EPDE  
Sbjct: 239 YTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFT 298

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           ++ +LSAC+    L  G+ +H +I+   +   + + + LI+ YA  G ++ A+ + DK +
Sbjct: 299 VTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAV 358

Query: 281 LK--NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +   N++  TA++ GY + G  + AR +FD M  +D+I W+AMI GY +N    EA++LF
Sbjct: 359 VADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELF 418

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
             M   G +P+  T+ +V+SACA L  L   ++IH    ++     + V+NAII +YA+ 
Sbjct: 419 RSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARS 478

Query: 399 GSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           GS+  AR VF+++  R+  ++WTSMI A A HG    A++ F +M    + P+ VT+IGV
Sbjct: 479 GSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGV 538

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
             AC+HAG +D+G+  +  M NE+ I P+  HY CMVDL  RA LL EA E ++ MP AP
Sbjct: 539 FSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAP 598

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
           + V+WGSL+AACRV    +LAE AA++LL +DPD+ GA   L+N+Y+   RW D   + K
Sbjct: 599 DTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWK 658

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
             K++ + KE   S   + ++V+ F   D  H Q D I +K  E+  E+K AG+VPD++S
Sbjct: 659 LRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEEIKKAGFVPDLNS 718

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
            L D++DE K E++  HSEKLA+ +GLIS+ + + +RI+KNLRVC DCH  IK +SKV  
Sbjct: 719 VLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKVVD 778

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           REI++RD TRFHH++DG CSCKDYW
Sbjct: 779 REIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 135/502 (26%), Positives = 241/502 (48%), Gaps = 55/502 (10%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           + F    L+ MY   G++ DAR++F +M  RD V W+VM+ G  + G F + +  F +M 
Sbjct: 96  NAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
              + P + +L+ +LS+C+       G  VH F+I   ++    + ++++ MY  CG  +
Sbjct: 156 GEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAE 215

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            A+ +F+++ +++     AMVS Y+  G+++ A  +F+ M E+ ++ W+A+I+GY +N  
Sbjct: 216 TARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGL 275

Query: 331 PQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389
              ALK F+ M     M+PD+ T+ SV+SACA+L +L   +++H YI +       ++ N
Sbjct: 276 DDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMN 335

Query: 390 AIIDMYAKCGSLES---------------------------------AREVFERMRRRNV 416
           A+I  YAK GS+E+                                 AREVF+ M  R+V
Sbjct: 336 ALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDV 395

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           I+WT+MI  +  +G    A+  F  M     +PN  T   VL AC+    +  G++I   
Sbjct: 396 IAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCR 455

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
                           ++ ++ R+  +  A  + + + +    V W S++ A   HG  E
Sbjct: 456 AIRSLQ-EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGE 514

Query: 537 LAEFAAKQLLQ--LDPDHDGALVLLS-----NIYAKDKRWQDVGELRKSMKERGILKER- 588
            A    +++L+  + PD    + + S         K KR+ +     + + E GI+ E  
Sbjct: 515 QAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYE-----QMLNEHGIVPEMS 569

Query: 589 --AC-----SRIEMNNEVYEFL 603
             AC     +R  +  E +EF+
Sbjct: 570 HYACMVDLLARAGLLTEAHEFI 591



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 142/271 (52%), Gaps = 10/271 (3%)

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG----CMDMAKGLF 276
            +++L     A N S G A+H   +   + + A+L + L++ YA  G    C   A+ LF
Sbjct: 28  FARLLQLSQTAVNPSAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLF 87

Query: 277 DKV--LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
           D +    +N     +++S Y+++G++ DAR++F QM E+D + W+ M+ G        +A
Sbjct: 88  DDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDA 147

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
           +K F +M   G+ P +  + +V+S+CA        +++H ++ K      + V N+++ M
Sbjct: 148 VKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYM 207

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y KCG  E+AR VFERM+ R+  SW +M++ +   G    AL  F  M++ SI    V++
Sbjct: 208 YGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSI----VSW 263

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
             ++   +  GL D   + F+ M    ++ P
Sbjct: 264 NAIIAGYNQNGLDDMALKFFSRMLTASSMEP 294


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 272/700 (38%), Positives = 404/700 (57%), Gaps = 39/700 (5%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83
           SL   ++ HA ILK   S    N  L   LL+ ++       SL  A  +F  I      
Sbjct: 62  SLEQGREVHAAILK---SGIQPNRYLENTLLSMYA----KCGSLTDARRVFDSIRDRNIV 114

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
                I A    ++   A K +  M   G   D+ +F  +L A    E L  G +VH   
Sbjct: 115 SWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEI 174

Query: 144 TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
            + G   +P V T LVGMY  CG I  AR++FD++  +++V W+++I GY Q G  D  L
Sbjct: 175 VEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVAL 234

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            L E M+ + V P+++  + IL  C+    L +G+ VH +II +    +  + ++LITMY
Sbjct: 235 ELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMY 294

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
             C                               G +E+AR +F  +  +D++ W+AM++
Sbjct: 295 CKC-------------------------------GGLEEARKLFSDLPHRDVVTWTAMVT 323

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           GYA+     EA+ LF  MQ  G+KPDK+T  SV+++C+    L + +RIH  +    +  
Sbjct: 324 GYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNL 383

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF-AIHGDARNALIFFNKM 442
           D+ + +A++ MYAKCGS++ A  VF +M  RNV++WT++I    A HG  R AL +F++M
Sbjct: 384 DVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQM 443

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
           K + I P+ VTF  VL AC+H GLV+EGR+ F SM  +Y I P  EHY C VDL GRA  
Sbjct: 444 KKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGH 503

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
           L EA  ++ +MPF P   +WG+L++ACRVH ++E  E AA+ +L+LDPD DGA V LS+I
Sbjct: 504 LEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSI 563

Query: 563 YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
           YA   R++D  ++R+ M++R ++KE   S IE++ +V+ F   D+SH +++QIY +L ++
Sbjct: 564 YAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKL 623

Query: 623 ISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVC 682
             ++K  GYVPD    L D+++E+K  ++  HSE+LA+ YGL+ +     IRIVKNLRVC
Sbjct: 624 TEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTPPGMPIRIVKNLRVC 683

Query: 683 EDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            DCH   K +SKV  REI+ RD  RFHH+ DGVCSC D+W
Sbjct: 684 GDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 159/338 (47%), Gaps = 41/338 (12%)

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           + G   E L +   M +        V   +L  C+R  +L  G  VH  I+ + +  + +
Sbjct: 24  KTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 83

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           L++TL++MYA CG +  A+ +FD +  +N+V                             
Sbjct: 84  LENTLLSMYAKCGSLTDARRVFDSIRDRNIV----------------------------- 114

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
              W+AMI  +   N   EA K +  M++ G KPDKVT +S+++A  +  +L   Q++H+
Sbjct: 115 --SWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHM 172

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
            I +     + RV  +++ MYAKCG +  AR +F+R+  +NV++WT +I  +A  G    
Sbjct: 173 EIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDV 232

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH----Y 490
           AL     M+   + PN +TF  +L  C+    ++ G+++     + Y I   Y       
Sbjct: 233 ALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKV-----HRYIIQSGYGRELWVV 287

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
             ++ ++ +   L EA +L   +P   +VV W +++  
Sbjct: 288 NSLITMYCKCGGLEEARKLFSDLPHR-DVVTWTAMVTG 324



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 2/207 (0%)

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           +EAL + N M + G +        ++  CA L  L+Q + +H  I K+    +  + N +
Sbjct: 29  KEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTL 88

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           + MYAKCGSL  AR VF+ +R RN++SWT+MI AF        A   +  MK     P+ 
Sbjct: 89  LSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDK 148

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
           VTF+ +L A ++  L+  G+++   +  E  +  +      +V ++ +   + +A  + +
Sbjct: 149 VTFVSLLNAFTNPELLQLGQKVHMEIV-EAGLELEPRVGTSLVGMYAKCGDISKARVIFD 207

Query: 512 TMPFAPNVVIWGSLMAACRVHGEIELA 538
            +P   NVV W  L+A     G++++A
Sbjct: 208 RLP-EKNVVTWTLLIAGYAQQGQVDVA 233



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 14/181 (7%)

Query: 6   QPTKPLTLPTSTAISSCSS---LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT 62
           Q  KP  +  ++ ++SCSS   L   K+ H Q++   H+ ++ +  L   L++ ++    
Sbjct: 344 QGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLV---HAGYNLDVYLQSALVSMYA---- 396

Query: 63  TPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSH-RPKHALKVFLKMLNEGLTIDRFSFP 121
              S+  A  +F+Q+           I      H R + AL+ F +M  +G+  D+ +F 
Sbjct: 397 KCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFT 456

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQ--TGLVGMYGACGKILDARLMFDKMS 179
            +L A     GL+E  + H     L +G  P V+  +  V + G  G + +A  +   M 
Sbjct: 457 SVLSACTHV-GLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMP 515

Query: 180 Y 180
           +
Sbjct: 516 F 516


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 262/688 (38%), Positives = 398/688 (57%), Gaps = 35/688 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F+++P   +      +  ++ + R   A+K  L M  +G T  +F+   +L + A 
Sbjct: 11  ARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAV 70

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD------- 182
            +    G +VH    KLG GS   V   ++ MYG CG    A  +F++M  R        
Sbjct: 71  TQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAM 130

Query: 183 ------------------------IVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPD 217
                                   IV W+ MI GY QNGL  + L LF  M   S++ PD
Sbjct: 131 VSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPD 190

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           E  ++ +LSAC+  GN+  G+ VH +I+   +A ++ + + LI+ YA  G ++ A+ + D
Sbjct: 191 EFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMD 250

Query: 278 KVLLK--NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           + +    N++  TA++ GY + G +E AR +F  M  +D++ W+AMI GY +N    EA+
Sbjct: 251 QSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAI 310

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
            LF  M  CG +P+  T+ +V+S CA L  LD  ++IH    ++       V+NAII MY
Sbjct: 311 DLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMY 370

Query: 396 AKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           A+ GS   AR +F+++  R+  I+WTSMI A A HG    A+  F +M    ++P+ +T+
Sbjct: 371 ARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITY 430

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           +GVL ACSHAG V+EG+  +  + NE+ I P+  HY CMVDL  RA L  EA E +  MP
Sbjct: 431 VGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMP 490

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
             P+ + WGSL++ACRVH   ELAE AA++LL +DP++ GA   ++N+Y+   RW D   
Sbjct: 491 VEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAAR 550

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           + K+ KE+ + KE   S   + ++++ F   D  H Q D +Y     +  E+K AG+VPD
Sbjct: 551 IWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPD 610

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
           + S L D++DE K E++  HSEKLA+ +GLIS+ + + +R++KNLRVC DCH  IK +SK
Sbjct: 611 LQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISK 670

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           V  REI++RD TRFHH++DG+CSCKDYW
Sbjct: 671 VTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 210/427 (49%), Gaps = 37/427 (8%)

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           M+   G++ DAR +F +M  RD V W+VM+ G  + G F E +    +M      P +  
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           L+ +LS+C+     + G  VH F++   +     + ++++ MY  CG  + A  +F+++ 
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
           ++++    AMVS  +  G+++ A  +F+ M ++ ++ W+AMI+GY +N    +ALKLF+ 
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 341 M-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           M     M PD+ T+ SV+SACA+LG +   +++H YI +     + +V NA+I  YAK G
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 240

Query: 400 S---------------------------------LESAREVFERMRRRNVISWTSMINAF 426
           S                                 +ESARE+F  M  R+V++WT+MI  +
Sbjct: 241 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY 300

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
             +G    A+  F  M     +PN  T   VL  C+    +D G++I         +   
Sbjct: 301 EQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL-LEQS 359

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
                 ++ ++ R+     A  + + + +    + W S++ A   HG+ E A    +++L
Sbjct: 360 SSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML 419

Query: 547 Q--LDPD 551
           +  ++PD
Sbjct: 420 RAGVEPD 426


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 274/713 (38%), Positives = 408/713 (57%), Gaps = 38/713 (5%)

Query: 11  LTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYA 70
           L L      S    L H K  H ++L+L+  H   N LL  +L ++ +          Y 
Sbjct: 3   LELTNWCIASGLKCLKHAKLAHCRLLRLNLHH--DNDLLSIILRSTINFSNNAQ----YP 56

Query: 71  LSIFSQIPAPPSR-VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           + +F + P   +  + N  IR +    R  +A+ ++  M    +  D F+F  +LKA AR
Sbjct: 57  ILVFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACAR 116

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
                 G+ +H L  K GF  D FV+T +V  Y  CG + DA  +FD M  +++V W+ M
Sbjct: 117 LNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGM 176

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G  + G F E ++LF  +  S + PD  V+ ++L AC+R G+L  G  +   + +   
Sbjct: 177 ICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRE--- 233

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                           CG            L +N+ V+T++V  Y++ G +E+AR +FD 
Sbjct: 234 ----------------CG------------LSRNVFVATSLVDMYTKCGSMEEARFVFDG 265

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           MVEKD++CWSAMI GYA N  P+EA++LF EM+   ++PD   M+  +S+CA LG L+  
Sbjct: 266 MVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELG 325

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
                 ++   F  +  +  ++ID YAKCGS+E A  V++ M+ ++ + + ++I+  A++
Sbjct: 326 NWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMY 385

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G    A   F +M    I PN  TF+G+L  C+HAGLVD+GR  F SM++++++ P  EH
Sbjct: 386 GQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEH 445

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           YGCMVDL  RA  L EA  L++ MP   NV++WGSL+  CR+H E +LAE   KQL++L+
Sbjct: 446 YGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELE 505

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P + G  VLLSNIY+  +RW +  ++R ++ E+G+ K    S +E++  V+EFL  D SH
Sbjct: 506 PWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSH 565

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
             + +IYEKL  +  +LK AGY P     L D+E+EEK   +  HSEKLA+ + LIS+  
Sbjct: 566 PLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSEKLAVAFALISTGA 625

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              IR+VKNLRVC DCH  IK +SKV  REIVIRD  RFH + DG CSC+DYW
Sbjct: 626 KYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGACSCRDYW 678


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  523 bits (1348), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 287/735 (39%), Positives = 412/735 (56%), Gaps = 66/735 (8%)

Query: 54  LTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRA-ISWSHRPKHALKVFLKMLNEG 112
           L +FS  +TT    +Y+L IF+ +  P +   N  +RA +   + P  AL  +   L   
Sbjct: 41  LINFSSHSTTLVPFHYSLRIFNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASH 100

Query: 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG------------------------- 147
              D +++P +L+  A      EG Q+H      G                         
Sbjct: 101 AKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSAR 160

Query: 148 --FGSDP-------------FVQTG----------------------LVGMYGACGKILD 170
             F   P             +VQ G                      ++ ++G  G +  
Sbjct: 161 RVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEK 220

Query: 171 ARLMFD--KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228
           AR +F+  +   RD+V WS M+  Y QN + +E L LF EMK S V  DE+V+   LSAC
Sbjct: 221 ARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSAC 280

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV-LLKNLVVS 287
           SR  N+  G  VH   +   V     L++ LI +Y++CG +  A+ +FD    L +L+  
Sbjct: 281 SRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISW 340

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
            +M+SGY R G ++DA ++F  M EKD++ WSAMISGYA++    EAL LF EMQ+ G++
Sbjct: 341 NSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVR 400

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           PD+  ++S ISAC HL  LD  + IH YI +N    ++ ++  +IDMY KCG +E+A EV
Sbjct: 401 PDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEV 460

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F  M  + V +W ++I   A++G    +L  F  MK     PN +TF+GVL AC H GLV
Sbjct: 461 FYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLV 520

Query: 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
           ++GR  F SM +E+ I    +HYGCMVDL GRA LL+EA EL+++MP AP+V  WG+L+ 
Sbjct: 521 NDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLG 580

Query: 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587
           ACR H + E+ E   ++L+QL PDHDG  VLLSNIYA    W +V E+R  M + G++K 
Sbjct: 581 ACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKT 640

Query: 588 RACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEK 647
             CS IE N  V+EFL  D++H Q + I   L+ V ++LK  GYVP      +D+++EEK
Sbjct: 641 PGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEK 700

Query: 648 REVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTR 707
              +  HSEKLA+ +GLI+    + IR+ KNLR+C DCH  +KL+SK + R+IV+RDR R
Sbjct: 701 ETALFRHSEKLAVAFGLITISPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHR 760

Query: 708 FHHYKDGVCSCKDYW 722
           FHH+K G CSC D+W
Sbjct: 761 FHHFKHGACSCMDFW 775



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 209/460 (45%), Gaps = 73/460 (15%)

Query: 147 GFGSDPFVQTGLVGMYGACGKILDARL---MFDKMSYRDIVPWSVMIDG--YFQNGLFDE 201
           G  +DP+  + L+        ++       +F+ +   +   W+ ++    Y QN     
Sbjct: 30  GLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNPNTFTWNTIMRAHLYLQNSPHQA 89

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
           +L+ ++    S+ +PD      +L  C+   +   G  +H   + +    D ++++TL+ 
Sbjct: 90  LLH-YKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMN 148

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV---------- 311
           +YA CG +  A+ +F++  + +LV    +++GY +AG+VE+A  +F+ M           
Sbjct: 149 LYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSM 208

Query: 312 -----------------------EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
                                  E+D++ WSAM+S Y +N   +EAL LF EM+  G+  
Sbjct: 209 IALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAV 268

Query: 349 DKVTMLSVISACAH----------------LGVLD----QAQRIHLY------IDKNAF- 381
           D+V ++S +SAC+                 +GV D    +   IHLY      +D     
Sbjct: 269 DEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIF 328

Query: 382 --GG---DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
             GG   DL   N++I  Y +CGS++ A  +F  M  ++V+SW++MI+ +A H     AL
Sbjct: 329 DDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEAL 388

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             F +M+   + P+    +  + AC+H   +D G+ I A ++    +         ++D+
Sbjct: 389 ALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRN-KLQVNVILSTTLIDM 447

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           + +   +  ALE+   M     V  W +++    ++G +E
Sbjct: 448 YMKCGCVENALEVFYAME-EKGVSTWNAVILGLAMNGSVE 486


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  523 bits (1348), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/688 (38%), Positives = 398/688 (57%), Gaps = 35/688 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F+++P   +      +  ++ + R   A+K  L M  +G T  +F+   +L + A 
Sbjct: 117 ARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAV 176

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD------- 182
            +    G +VH    KLG GS   V   ++ MYG CG    A  +F++M  R        
Sbjct: 177 TQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAM 236

Query: 183 ------------------------IVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPD 217
                                   IV W+ MI GY QNGL  + L LF  M   S++ PD
Sbjct: 237 VSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPD 296

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           E  ++ +LSAC+  GN+  G+ VH +I+   +A ++ + + LI+ YA  G ++ A+ + D
Sbjct: 297 EFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMD 356

Query: 278 KVLLK--NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           + +    N++  TA++ GY + G +E AR +F  M  +D++ W+AMI GY +N    EA+
Sbjct: 357 QSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAI 416

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
            LF  M  CG +P+  T+ +V+S CA L  LD  ++IH    ++       V+NAII MY
Sbjct: 417 DLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMY 476

Query: 396 AKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           A+ GS   AR +F+++  R+  I+WTSMI A A HG    A+  F +M    ++P+ +T+
Sbjct: 477 ARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITY 536

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           +GVL ACSHAG V+EG+  +  + NE+ I P+  HY CMVDL  RA L  EA E +  MP
Sbjct: 537 VGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMP 596

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
             P+ + WGSL++ACRVH   ELAE AA++LL +DP++ GA   ++N+Y+   RW D   
Sbjct: 597 VEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAAR 656

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           + K+ KE+ + KE   S   + ++++ F   D  H Q D +Y     +  E+K AG+VPD
Sbjct: 657 IWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPD 716

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
           + S L D++DE K E++  HSEKLA+ +GLIS+ + + +R++KNLRVC DCH  IK +SK
Sbjct: 717 LQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISK 776

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           V  REI++RD TRFHH++DG+CSCKDYW
Sbjct: 777 VTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 213/435 (48%), Gaps = 37/435 (8%)

Query: 153 FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS 212
           F    L+ M+   G++ DAR +F +M  RD V W+VM+ G  + G F E +    +M   
Sbjct: 99  FTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTAD 158

Query: 213 NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
              P +  L+ +LS+C+     + G  VH F++   +     + ++++ MY  CG  + A
Sbjct: 159 GFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETA 218

Query: 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
             +F+++ ++++    AMVS  +  G+++ A  +F+ M ++ ++ W+AMI+GY +N    
Sbjct: 219 TTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDA 278

Query: 333 EALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           +ALKLF+ M     M PD+ T+ SV+SACA+LG +   +++H YI +     + +V NA+
Sbjct: 279 KALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNAL 338

Query: 392 IDMYAKCGS---------------------------------LESAREVFERMRRRNVIS 418
           I  YAK GS                                 +ESARE+F  M  R+V++
Sbjct: 339 ISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVA 398

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           WT+MI  +  +G    A+  F  M     +PN  T   VL  C+    +D G++I     
Sbjct: 399 WTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAI 458

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
               +         ++ ++ R+     A  + + + +    + W S++ A   HG+ E A
Sbjct: 459 RSL-LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEA 517

Query: 539 EFAAKQLLQ--LDPD 551
               +++L+  ++PD
Sbjct: 518 VGLFEEMLRAGVEPD 532



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 142/270 (52%), Gaps = 10/270 (3%)

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA----NCGCMDMAKGLFD 277
           +++L  C  A N   G A+H   +   +   A+L + L++ Y       G +  A+ LFD
Sbjct: 30  ARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFD 89

Query: 278 KVLL--KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           ++ L  +N+    +++S ++++G++ DAR +F +M E+D + W+ M+ G        EA+
Sbjct: 90  EIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAI 149

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           K   +M   G  P + T+ +V+S+CA        +++H ++ K   G  + V N++++MY
Sbjct: 150 KTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMY 209

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
            KCG  E+A  VFERM  R+V SW +M++     G    A   F  M D SI    V++ 
Sbjct: 210 GKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSI----VSWN 265

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPP 485
            ++   +  GL  +  ++F+ M +E ++ P
Sbjct: 266 AMIAGYNQNGLDAKALKLFSRMLHESSMAP 295


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 272/699 (38%), Positives = 401/699 (57%), Gaps = 38/699 (5%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83
           SL   ++ HA ILK   S    N  L   LL+ ++       SL  A  +F  I      
Sbjct: 111 SLEQGREVHAAILK---SGIQPNRYLENTLLSMYA----KCGSLTDARRVFDGIRDRNIV 163

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
                I A    ++   A K +  M   G   D+ +F  +L A    E L  G +VH   
Sbjct: 164 SWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEI 223

Query: 144 TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
            K G   +P V T LVGMY  CG I  A+++FDK+  +++V W+++I GY Q G  D  L
Sbjct: 224 AKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVAL 283

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            L E+M+ + V P+++  + IL  C+    L +G+ VH +II +    +  + + LITMY
Sbjct: 284 ELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMY 343

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
             C                               G +++AR +F  +  +D++ W+AM++
Sbjct: 344 CKC-------------------------------GGLKEARKLFGDLPHRDVVTWTAMVT 372

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           GYA+     EA+ LF  MQ  G+KPDK+T  S +++C+    L + + IH  +    +  
Sbjct: 373 GYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSL 432

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
           D+ + +A++ MYAKCGS++ AR VF +M  RNV++WT+MI   A HG  R AL +F +MK
Sbjct: 433 DVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMK 492

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
            + I P+ VTF  VL AC+H GLV+EGR+ F SM  +Y I P  EHY C VDL GRA  L
Sbjct: 493 KQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHL 552

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563
            EA  ++ TMPF P   +WG+L++ACR+H ++E  E AA+ +L+LDPD DGA V LSNIY
Sbjct: 553 EEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIY 612

Query: 564 AKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVI 623
           A   R++D  ++R+ M++R ++KE   S IE++ +V+ F   D+SH +  +IY +L ++ 
Sbjct: 613 AAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLT 672

Query: 624 SELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCE 683
            ++K  GYVPD    L D+++E+K + +  HSE+LA+ YGL+ +   + IRIVKNLRVC 
Sbjct: 673 EQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLRVCG 732

Query: 684 DCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           DCH   K +SKV  REI+ RD  RFHH+ DGVCSC D+W
Sbjct: 733 DCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 161/338 (47%), Gaps = 41/338 (12%)

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           + G   E L +   M +        V   +L  C+R  +L  G  VH  I+ + +  + +
Sbjct: 73  KQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 132

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           L++TL++MYA CG +  A+ +FD +  +N+V                             
Sbjct: 133 LENTLLSMYAKCGSLTDARRVFDGIRDRNIV----------------------------- 163

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
              W+AMI  +   N   EA K +  M++ G KPDKVT +S+++A  +  +L   Q++H+
Sbjct: 164 --SWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHM 221

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
            I K     + RV  +++ MYAKCG +  A+ +F+++  +NV++WT +I  +A  G    
Sbjct: 222 EIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDV 281

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH----Y 490
           AL    KM+   + PN +T+  +L  C+    ++ G+++     + Y I   Y       
Sbjct: 282 ALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKV-----HRYIIQSGYGREIWVV 336

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
             ++ ++ +   L+EA +L   +P   +VV W +++  
Sbjct: 337 NALITMYCKCGGLKEARKLFGDLPHR-DVVTWTAMVTG 373



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 4/226 (1%)

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
           D +  S  +S   +    +EAL + N M + G +        ++  CA L  L+Q + +H
Sbjct: 60  DTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVH 119

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
             I K+    +  + N ++ MYAKCGSL  AR VF+ +R RN++SWT+MI AF       
Sbjct: 120 AAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNL 179

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE-YNIPPKYEHYGC 492
            A   +  MK     P+ VTF+ +L A ++  L+  G+++   +      + P+      
Sbjct: 180 EAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TS 237

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
           +V ++ +   + +A  + + +P   NVV W  L+A     G++++A
Sbjct: 238 LVGMYAKCGDISKAQVIFDKLP-EKNVVTWTLLIAGYAQQGQVDVA 282



 Score = 48.1 bits (113), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 96/240 (40%), Gaps = 37/240 (15%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           Q  KP  +  ++A++SCSS   +++  +   +L H+ +S +  L   L++ ++       
Sbjct: 393 QGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYA----KCG 448

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           S+  A  +F+Q+           I   +   R + AL+ F +M  +G+  D+ +F  +L 
Sbjct: 449 SMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLS 508

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A     GL+E  + H     L +G  P V+                              
Sbjct: 509 ACTHV-GLVEEGRKHFRSMYLDYGIKPMVEH----------------------------- 538

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           +S  +D   + G  +E  N+   M     +P   V   +LSAC    ++  GE   E ++
Sbjct: 539 YSCFVDLLGRAGHLEEAENVILTMPF---QPGPSVWGALLSACRIHSDVERGERAAENVL 595


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 253/635 (39%), Positives = 396/635 (62%)

Query: 88  FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
            I   S     K A+ +F +M   G+  +  +   ++ A A+ + L  G +V    ++LG
Sbjct: 202 LINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELG 261

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207
                 +   LV MY  CG I  AR +FD+ + +++V ++ ++  Y  +    +VL + +
Sbjct: 262 MELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILD 321

Query: 208 EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           EM      PD++ +   ++AC++ G+LS G++ H +++ N +    ++ + +I MY  CG
Sbjct: 322 EMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCG 381

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
             + A  +F+ +  K +V   ++++G  R G +E A  IFD+M+E+DL+ W+ MI    +
Sbjct: 382 KREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQ 441

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
            +  +EA++LF EMQ  G+  D+VTM+ + SAC +LG LD A+ +  YI+KN    DL++
Sbjct: 442 VSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQL 501

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
             A++DM+++CG   SA  VF+RM +R+V +WT+ I   A+ G+   A+  FN+M ++ +
Sbjct: 502 GTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKV 561

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            P+ V F+ +L ACSH G VD+GR++F SM   + I P   HYGCMVDL GRA LL EA+
Sbjct: 562 KPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAV 621

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
           +L+++MP  PN V+WGSL+AACR H  +ELA +AA++L QL P+  G  VLLSNIYA   
Sbjct: 622 DLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAG 681

Query: 568 RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627
           +W DV  +R  MKE+G+ K    S IE+   ++EF + D SH +   I   L E+   L 
Sbjct: 682 KWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLS 741

Query: 628 PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHN 687
            AGYVPD  + L+D++++EK  ++  HSEKLA+ YGLI++ +   IR+VKNLR+C DCH+
Sbjct: 742 EAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHS 801

Query: 688 FIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           F KLVSK+Y REI +RD  R+H +K+G CSC+DYW
Sbjct: 802 FAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 163/582 (28%), Positives = 275/582 (47%), Gaps = 71/582 (12%)

Query: 6   QPTKPLTLPTSTAI-SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP 64
           +   P+T  +S+ +  +C +L  +KQ H  ++K     H   S L KL+ +S  + T   
Sbjct: 18  KEANPITRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTL-- 75

Query: 65  SSLYYALSIFSQIPAPPSRV--SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
            SL YA + F       + +   N  IR  + +     A+ ++++ML  G+  D+++FP 
Sbjct: 76  ESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPF 135

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +L A ++   L EG+QVHG   K+G   D FV   L+  Y  CGK+   R +FD M  R+
Sbjct: 136 LLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERN 195

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +V W+ +I+GY    L  E ++LF +M  + VEP+ + +  ++SAC++  +L  G+ V  
Sbjct: 196 VVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCS 255

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           +I +  + L   + + L+ MY  CG +  A+ +FD+   KNLV+   ++S Y       D
Sbjct: 256 YISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASD 315

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
             +I D+M++K                               G +PDKVTMLS I+ACA 
Sbjct: 316 VLVILDEMLQK-------------------------------GPRPDKVTMLSTIAACAQ 344

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           LG L   +  H Y+ +N   G   ++NAIIDMY KCG  E+A +VFE M  + V++W S+
Sbjct: 345 LGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSL 404

Query: 423 INAFAIHGDA-------------------------------RNALIFFNKMKDESIDPNG 451
           I      GD                                  A+  F +M+++ I  + 
Sbjct: 405 IAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDR 464

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
           VT +G+  AC + G +D  + +  +   + +I    +    +VD+F R      A+ + +
Sbjct: 465 VTMVGIASACGYLGALDLAKWV-CTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFK 523

Query: 512 TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ--LDPD 551
            M    +V  W + +    + G  E A     ++L+  + PD
Sbjct: 524 RME-KRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPD 564



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 207/411 (50%), Gaps = 52/411 (12%)

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           ++ +I GY   GL D+ + L+ +M +  + PD+     +LSACS+   LS G  VH  ++
Sbjct: 98  YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
              +  D  + ++LI  YA C                               G+V+  R 
Sbjct: 158 KMGLEGDIFVSNSLIHFYAEC-------------------------------GKVDLGRK 186

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +FD M+E++++ W+++I+GY+  +  +EA+ LF +M   G++P+ VTM+ VISACA L  
Sbjct: 187 LFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKD 246

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L+  +++  YI +        + NA++DMY KCG + +AR++F+    +N++ + ++++ 
Sbjct: 247 LELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSN 306

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
           +  H  A + L+  ++M  +   P+ VT +  + AC+  G +  G+      ++ Y +  
Sbjct: 307 YVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKS-----SHAYVLRN 361

Query: 486 KYEHY----GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
             E +      ++D++ +      A ++ E MP    VV W SL+A     G++ELA   
Sbjct: 362 GLEGWDNISNAIIDMYMKCGKREAACKVFEHMP-NKTVVTWNSLIAGLVRDGDMELAWRI 420

Query: 542 AKQLLQLD----PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
             ++L+ D        GALV +S        +++  EL + M+ +GI  +R
Sbjct: 421 FDEMLERDLVSWNTMIGALVQVS-------MFEEAIELFREMQNQGIPGDR 464



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 134/250 (53%), Gaps = 3/250 (1%)

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           L  ++ +I GYA      +A+ L+ +M V G+ PDK T   ++SAC+ +  L +  ++H 
Sbjct: 95  LFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHG 154

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
            + K    GD+ V+N++I  YA+CG ++  R++F+ M  RNV+SWTS+IN ++    ++ 
Sbjct: 155 AVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKE 214

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           A+  F +M +  ++PN VT + V+ AC+    ++ G+++  S  +E  +         +V
Sbjct: 215 AVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKV-CSYISELGMELSTIMVNALV 273

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           D++ +   +  A ++ +      N+V++ ++M+    H           ++LQ  P  D 
Sbjct: 274 DMYMKCGDICAARQIFDECA-NKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPD- 331

Query: 555 ALVLLSNIYA 564
            + +LS I A
Sbjct: 332 KVTMLSTIAA 341


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 272/728 (37%), Positives = 415/728 (57%), Gaps = 41/728 (5%)

Query: 4   LSQPTKPLTLPT-----STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFS 58
           LS   K L LP+        +  C+SLT +K  H+ +       H+ + L   ++L S  
Sbjct: 12  LSHTHKVLALPSLHHFYDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKL 71

Query: 59  LPTTTPSSLY--YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTID 116
               +  +L+            AP S + N  +RA + + R   A+ +++ M   G+ ++
Sbjct: 72  GDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVN 131

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
            F++P +LK  A   G + G  VHG   + GFGSD FV+  LV MY  CG+I DA  +FD
Sbjct: 132 NFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFD 191

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
           +M  RD+V W+ MI  Y Q     + L LF +M+      DE+    + SA  + G+   
Sbjct: 192 RMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRM 251

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
             +VH + + N    D  + ++++ MYA C                              
Sbjct: 252 AISVHGYAVLNGFIGDVSVGNSIVGMYAKC------------------------------ 281

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
            G VE ARL+FD+M E++ I W++M+SGY +N  P +AL LFN+MQ     P+ VT L +
Sbjct: 282 -GNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIM 340

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE--RMRRR 414
           +SAC++LG     +++H ++  +    D  + NAI+DMY KCG L++A E+F    +  R
Sbjct: 341 VSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGER 400

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           +V SW  +I+ + +HG  + AL  F++M+ E ++PN +TF  +L ACSHAGL+DEGR+ F
Sbjct: 401 DVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCF 460

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
           A MT + ++ P+ +HY CMVD+ GRA  L EA  L++ +P  P+  +WG+L+ ACR+HG 
Sbjct: 461 ADMT-KLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGN 519

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
            EL E AA  L QL+P+H G  VL+SNIYA   +W++V  +R++MK RG+ K  A S IE
Sbjct: 520 TELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIE 579

Query: 595 MNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWH 654
              EV+ F TAD+S     ++Y K+  +  E+K  GYVPD+   L D+E E+K  ++ +H
Sbjct: 580 FGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYH 639

Query: 655 SEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDG 714
           SEKLA+ +G++   +   I++ KNLRVC DCH   K +S +Y R+I++RD  RFHH++ G
Sbjct: 640 SEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGG 699

Query: 715 VCSCKDYW 722
            CSC DYW
Sbjct: 700 RCSCGDYW 707


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 267/709 (37%), Positives = 420/709 (59%), Gaps = 41/709 (5%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
           ++ I S +    +KQ HA++L L         L+ KL+  S S    T     +A  +F 
Sbjct: 25  ASLIDSATHKAQLKQIHARLLVLGLQF--SGFLITKLIHASSSFGDIT-----FARQVFD 77

Query: 76  QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
            +P P     N  IR  S ++  + AL ++  M    ++ D F+FP +LKA +    L  
Sbjct: 78  DLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQM 137

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY--RDIVPWSVMIDGY 193
           G  VH    +LGF +D FVQ GL+ +Y  C ++  AR +F+ +    R IV W+ ++  Y
Sbjct: 138 GRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAY 197

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
            QNG   E L +F +M+  +V+PD + L  +L+A +   +L  G ++H  ++   + ++ 
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
            L  +L TMYA CG                               QV  A+++FD+M   
Sbjct: 258 DLLISLNTMYAKCG-------------------------------QVATAKILFDKMKSP 286

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
           +LI W+AMISGYA+N + +EA+ +F+EM    ++PD +++ S ISACA +G L+QA+ ++
Sbjct: 287 NLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMY 346

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
            Y+ ++ +  D+ +++A+IDM+AKCGS+E AR VF+R   R+V+ W++MI  + +HG AR
Sbjct: 347 EYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAR 406

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
            A+  +  M+   + PN VTF+G+L AC+H+G+V EG   F  M  ++ I P+ +HY C+
Sbjct: 407 EAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACV 465

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553
           +DL GRA  L +A E+++ MP  P V +WG+L++AC+ H  +EL E+AA+QL  +DP + 
Sbjct: 466 IDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNT 525

Query: 554 GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTD 613
           G  V LSN+YA  + W  V E+R  MKE+G+ K+  CS +E+   +  F   D+SH + +
Sbjct: 526 GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYE 585

Query: 614 QIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCI 673
           +I  ++  + S LK  G+V +  ++L DL DEE  E +  HSE++A+ YGLIS+ + + +
Sbjct: 586 EIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPL 645

Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           RI KNLR C +CH   KL+SK+  REIV+RD  RFHH+KDGVCSC DYW
Sbjct: 646 RITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 203/431 (47%), Gaps = 47/431 (10%)

Query: 110 NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL 169
           N G+  D F    I  A  +A+      Q+H     LG     F+ T L+    + G I 
Sbjct: 15  NSGIHSDSFYASLIDSATHKAQL----KQIHARLLVLGLQFSGFLITKLIHASSSFGDIT 70

Query: 170 DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229
            AR +FD +    I PW+ +I GY +N  F + L ++  M+++ V PD      +L ACS
Sbjct: 71  FARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACS 130

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL--KNLVVS 287
              +L  G  VH  +       D  +Q+ LI +YA C  +  A+ +F+ + L  + +V  
Sbjct: 131 GLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSW 190

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           TA+VS Y++ G+  +A  IF QM + D+                               K
Sbjct: 191 TAIVSAYAQNGEPMEALEIFSQMRKMDV-------------------------------K 219

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           PD V ++SV++A   L  L Q + IH  + K     +  +  ++  MYAKCG + +A+ +
Sbjct: 220 PDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKIL 279

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F++M+  N+I W +MI+ +A +G AR A+  F++M ++ + P+ ++    + AC+  G +
Sbjct: 280 FDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSL 339

Query: 468 DEGREIFASMTNEYNIPPKYEH----YGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
           ++ R ++     EY     Y         ++D+F +   + E   LV       +VV+W 
Sbjct: 340 EQARSMY-----EYVGRSDYRDDVFISSALIDMFAKCGSV-EGARLVFDRTLDRDVVVWS 393

Query: 524 SLMAACRVHGE 534
           +++    +HG 
Sbjct: 394 AMIVGYGLHGR 404


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 276/709 (38%), Positives = 406/709 (57%), Gaps = 43/709 (6%)

Query: 49  LLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKM 108
           LL L   S  LP         A  +F+++P   +      I  ++ S R   A+K FL M
Sbjct: 287 LLSLYAKSGRLPD--------AHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDM 338

Query: 109 LNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI 168
           ++EG    +F+   +L + A  E    G +VH    KLG  S   V   ++ MYG CG  
Sbjct: 339 VSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDA 398

Query: 169 LDARLMFDKMSYRDIVPWSVM-------------------------------IDGYFQNG 197
             AR +F++M  R +  W+VM                               I GY QNG
Sbjct: 399 ETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNG 458

Query: 198 LFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           L    L  F  M   S++EPD   ++ +LSAC+    L  G+ +H +I+   +   + + 
Sbjct: 459 LDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIM 518

Query: 257 STLITMYANCGCMDMAKGLFDKVLLK--NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           + LI+ YA  G ++ A+ + D+ ++   N++  TA++ GY + G  + AR IFD M  +D
Sbjct: 519 NALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRD 578

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           +I W+AMI GY +N    EA++LF  M + G +P+  T+ +V+SACA L  LD  ++IH 
Sbjct: 579 VIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHC 638

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDAR 433
              ++     + V+NAII +YA+ GS+  AR VF+++  R+  I+WTSMI A A HG   
Sbjct: 639 KAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGE 698

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
            A++ F +M    + P+ +T++GVL AC+HAG VD+G+  +  M NE+ I P+  HY CM
Sbjct: 699 QAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACM 758

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553
           VDL  RA LL EA E ++ MP AP+ V+WGSL+AACRV    +LAE AA +LL +DP + 
Sbjct: 759 VDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNS 818

Query: 554 GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTD 613
           GA   L+N+Y+   RW D   + K  K++G+ KE   S   +  +V+ F   D  H Q D
Sbjct: 819 GAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRD 878

Query: 614 QIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCI 673
            IY K  E+  E+K AG+VPD++S L D++DE K E++  HSEKLA+ +GLIS+ + + +
Sbjct: 879 SIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTL 938

Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           RI+KNLRVC DCH  IK +SK   REI++RD TRFHH++DG CSCKDYW
Sbjct: 939 RIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 240/502 (47%), Gaps = 55/502 (10%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           + F    L+ +Y   G++ DA ++F +M  RD V W++MI G  ++G F + +  F +M 
Sbjct: 280 NAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
                P +  L+ +LS+C+       G  VH F++   ++    + ++++ MY  CG  +
Sbjct: 340 SEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAE 399

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            A+ +F+++ ++++     MVS Y+  G++E A  +F+ MVE+ ++ W+ +I+GY +N  
Sbjct: 400 TARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGL 459

Query: 331 PQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389
              ALK F+ M     M+PD  T+ SV+SACA+L +L   +++H YI +       ++ N
Sbjct: 460 DGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMN 519

Query: 390 AIIDMYAKCGSLES---------------------------------AREVFERMRRRNV 416
           A+I  YAK GS+E+                                 ARE+F+ M  R+V
Sbjct: 520 ALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDV 579

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           I+WT+MI  +  +G    A+  F  M     +PN  T   VL AC+    +D G++I   
Sbjct: 580 IAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCK 639

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
                           ++ ++ R+  +  A  + + + +    + W S++ A   HG  E
Sbjct: 640 AIRSLQ-EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGE 698

Query: 537 LAEFAAKQLLQ--LDPDHDGALVLLS-----NIYAKDKRWQDVGELRKSMKERGILKER- 588
            A    +++++  + PDH   + +LS         K KR+ +     +   E GI+ +  
Sbjct: 699 QAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYE-----QMQNEHGIVPQMS 753

Query: 589 --AC-----SRIEMNNEVYEFL 603
             AC     +R  +  E +EF+
Sbjct: 754 HYACMVDLHARAGLLTEAHEFI 775



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 142/270 (52%), Gaps = 10/270 (3%)

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG----CMDMAKGLFD 277
           +++L  C  A N S G A+H   +   + +  +L + L+  YA+ G    C   A+ LFD
Sbjct: 213 ARLLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFD 272

Query: 278 KV--LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
            +    +N     +++S Y+++G++ DA ++F +M ++D + W+ MI G   +    +A+
Sbjct: 273 DIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAV 332

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           K F +M   G  P + T+ +V+S+CA +      +++H ++ K      + V N+++ MY
Sbjct: 333 KTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMY 392

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
            KCG  E+AR VFERM+ R+V SW  M++ +   G    A+  F  M + SI    V++ 
Sbjct: 393 GKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSI----VSWN 448

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPP 485
            ++   +  GL     + F+ M +  ++ P
Sbjct: 449 TIIAGYNQNGLDGMALKFFSRMLSASSMEP 478


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 253/661 (38%), Positives = 388/661 (58%), Gaps = 32/661 (4%)

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
           T   S+  AL +F  +           I   +   R   A   F KM+  G+  +R +F 
Sbjct: 358 TKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFM 417

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
            IL A +    L  G Q+     + G+GSD  V+T L+ MY  CG + DA  +F+K+S +
Sbjct: 418 SILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQ 477

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           ++V W+ MI  Y Q+  +D  L  F+ +    ++P+    + IL+ C  + +L  G+ VH
Sbjct: 478 NVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVH 537

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
             I+   +  D H+ + L++M+ NC                               G + 
Sbjct: 538 FLIMKAGLESDLHVSNALVSMFVNC-------------------------------GDLM 566

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
            A+ +F+ M ++DL+ W+ +I+G+ ++   Q A   F  MQ  G+KPDK+T   +++ACA
Sbjct: 567 SAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACA 626

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
               L + +R+H  I + AF  D+ V   +I MY KCGS+E A +VF ++ ++NV SWTS
Sbjct: 627 SPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTS 686

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI  +A HG  + AL  F +M+ E + P+ +TF+G L AC+HAGL++EG   F SM  E+
Sbjct: 687 MITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEF 745

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
           NI P+ EHYGCMVDLFGRA LL EA+E +  M   P+  +WG+L+ AC+VH  +ELAE A
Sbjct: 746 NIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKA 805

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
           A++ L+LDP+ +G  V+LSNIYA    W++V ++RK M +RG++K+   S IE++ +V+ 
Sbjct: 806 AQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHT 865

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           F + D++H QT++I+ +L  +  E++  GYVPD    L D+ED EK + + +HSE+LA+ 
Sbjct: 866 FYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAIT 925

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           YGL+ +   + I I KNLRVC DCH   K +SK+  R+I+ RD  RFHH+KDGVCSC D+
Sbjct: 926 YGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDF 985

Query: 722 W 722
           W
Sbjct: 986 W 986



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 142/499 (28%), Positives = 254/499 (50%), Gaps = 50/499 (10%)

Query: 50  LKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML 109
           L++L TSFS        + +A           ++ +N  +  +S + +   A++V  ++ 
Sbjct: 50  LRMLTTSFSGRCPKGRCVVFA-------DIKDTQKANAVLNRLSKAGQFNEAMQVLERVD 102

Query: 110 NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL 169
           +  + I R ++  +L+   + + L +G +++    K G   D F+   L+ MY  CG  +
Sbjct: 103 SSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTI 162

Query: 170 DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229
            A+ +FD M  +D+  W++++ GY Q+GL++E   L E+M   +V+PD+     +L+AC+
Sbjct: 163 SAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACA 222

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
            A N+  G  ++  I+      D  + + LI M+  C                       
Sbjct: 223 DARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKC----------------------- 259

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
                   G + DA  +FD +  +DL+ W++MI+G A +   ++A  LF  M+  G++PD
Sbjct: 260 --------GDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPD 311

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           KV  +S++ AC H   L+Q +++H  + +  +  ++ V  AI+ MY KCGS+E A EVF+
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFD 371

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            ++ RNV+SWT+MI  FA HG    A +FFNKM +  I+PN VTF+ +L ACS    +  
Sbjct: 372 LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKR 431

Query: 470 GREIFASMTNEYNIPPKYEH----YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
           G++I      ++ I   Y         ++ ++ +   L++A  + E +    NVV W ++
Sbjct: 432 GQQI-----QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAM 485

Query: 526 MAACRVHGEIE--LAEFAA 542
           + A   H + +  LA F A
Sbjct: 486 ITAYVQHEQYDNALATFQA 504



 Score =  238 bits (607), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 139/460 (30%), Positives = 238/460 (51%), Gaps = 45/460 (9%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + A K+  +M+ + +  D+ +F  +L A A A  + +G +++ L  K G+ +D FV T L
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + M+  CG I DA  +FD +  RD+V W+ MI G  ++G F +  NLF+ M+   V+PD+
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           +    +L AC+    L  G+ VH  +    V  D                          
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARM--KEVGWDT------------------------- 345

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
                + V TA++S Y++ G +EDA  +FD +  ++++ W+AMI+G+A++    EA   F
Sbjct: 346 ----EIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFF 401

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           N+M   G++P++VT +S++ AC+    L + Q+I  +I +  +G D RV  A++ MYAKC
Sbjct: 402 NKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKC 461

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           GSL+ A  VFE++ ++NV++W +MI A+  H    NAL  F  +  E I PN  TF  +L
Sbjct: 462 GSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSIL 521

Query: 459 YACSHAGLVDEGREIF-----ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
             C  +  ++ G+ +      A + ++ ++         +V +F     L  A  L   M
Sbjct: 522 NVCKSSDSLELGKWVHFLIMKAGLESDLHVS------NALVSMFVNCGDLMSAKNLFNDM 575

Query: 514 PFAPNVVIWGSLMAACRVHGEIELA--EFAAKQLLQLDPD 551
           P   ++V W +++A    HG+ ++A   F   Q   + PD
Sbjct: 576 P-KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPD 614


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 253/661 (38%), Positives = 388/661 (58%), Gaps = 32/661 (4%)

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
           T   S+  AL +F  +           I   +   R   A   F KM+  G+  +R +F 
Sbjct: 358 TKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFM 417

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
            IL A +    L  G Q+     + G+GSD  V+T L+ MY  CG + DA  +F+K+S +
Sbjct: 418 SILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQ 477

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           ++V W+ MI  Y Q+  +D  L  F+ +    ++P+    + IL+ C  + +L  G+ VH
Sbjct: 478 NVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVH 537

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
             I+   +  D H+ + L++M+ NC                               G + 
Sbjct: 538 FLIMKAGLESDLHVSNALVSMFVNC-------------------------------GDLM 566

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
            A+ +F+ M ++DL+ W+ +I+G+ ++   Q A   F  MQ  G+KPDK+T   +++ACA
Sbjct: 567 SAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACA 626

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
               L + +R+H  I + AF  D+ V   +I MY KCGS+E A +VF ++ ++NV SWTS
Sbjct: 627 SPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTS 686

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI  +A HG  + AL  F +M+ E + P+ +TF+G L AC+HAGL++EG   F SM  E+
Sbjct: 687 MIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEF 745

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
           NI P+ EHYGCMVDLFGRA LL EA+E +  M   P+  +WG+L+ AC+VH  +ELAE A
Sbjct: 746 NIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKA 805

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
           A++ L+LDP+ +G  V+LSNIYA    W++V ++RK M +RG++K+   S IE++ +V+ 
Sbjct: 806 AQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHT 865

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           F + D++H QT++I+ +L  +  E++  GYVPD    L D+ED EK + + +HSE+LA+ 
Sbjct: 866 FYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAIT 925

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           YGL+ +   + I I KNLRVC DCH   K +SK+  R+I+ RD  RFHH+KDGVCSC D+
Sbjct: 926 YGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDF 985

Query: 722 W 722
           W
Sbjct: 986 W 986



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/499 (28%), Positives = 255/499 (51%), Gaps = 50/499 (10%)

Query: 50  LKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML 109
           L++L TSFS        + +A           ++ +N  +  +S + +   A++V  ++ 
Sbjct: 50  LRMLTTSFSGRCPKGRCVVFA-------DIKDTQKANAVLNRLSKAGQFNEAMQVLERVD 102

Query: 110 NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL 169
           +  + I R ++  +L+   + + L +G +++    K G   D F++  L+ MY  CG  +
Sbjct: 103 SSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTI 162

Query: 170 DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229
            A+ +FD M  +D+  W++++ GY Q+GL++E   L E+M   +V+PD+     +L+AC+
Sbjct: 163 SAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACA 222

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
            A N+  G  ++  I+      D  + + LI M+  C                       
Sbjct: 223 DARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKC----------------------- 259

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
                   G + DA  +FD +  +DL+ W++MI+G A +   ++A  LF  M+  G++PD
Sbjct: 260 --------GDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPD 311

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           KV  +S++ AC H   L+Q +++H  + +  +  ++ V  AI+ MY KCGS+E A EVF+
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFD 371

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            ++ RNV+SWT+MI  FA HG    A +FFNKM +  I+PN VTF+ +L ACS    +  
Sbjct: 372 LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKR 431

Query: 470 GREIFASMTNEYNIPPKYEH----YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
           G++I      ++ I   Y         ++ ++ +   L++A  + E +    NVV W ++
Sbjct: 432 GQQI-----QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAM 485

Query: 526 MAACRVHGEIE--LAEFAA 542
           + A   H + +  LA F A
Sbjct: 486 ITAYVQHEQYDNALATFQA 504



 Score =  238 bits (607), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 139/460 (30%), Positives = 238/460 (51%), Gaps = 45/460 (9%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + A K+  +M+ + +  D+ +F  +L A A A  + +G +++ L  K G+ +D FV T L
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + M+  CG I DA  +FD +  RD+V W+ MI G  ++G F +  NLF+ M+   V+PD+
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           +    +L AC+    L  G+ VH  +    V  D                          
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARM--KEVGWDT------------------------- 345

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
                + V TA++S Y++ G +EDA  +FD +  ++++ W+AMI+G+A++    EA   F
Sbjct: 346 ----EIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFF 401

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           N+M   G++P++VT +S++ AC+    L + Q+I  +I +  +G D RV  A++ MYAKC
Sbjct: 402 NKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKC 461

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           GSL+ A  VFE++ ++NV++W +MI A+  H    NAL  F  +  E I PN  TF  +L
Sbjct: 462 GSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSIL 521

Query: 459 YACSHAGLVDEGREIF-----ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
             C  +  ++ G+ +      A + ++ ++         +V +F     L  A  L   M
Sbjct: 522 NVCKSSDSLELGKWVHFLIMKAGLESDLHVS------NALVSMFVNCGDLMSAKNLFNDM 575

Query: 514 PFAPNVVIWGSLMAACRVHGEIELA--EFAAKQLLQLDPD 551
           P   ++V W +++A    HG+ ++A   F   Q   + PD
Sbjct: 576 P-KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPD 614


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/697 (38%), Positives = 408/697 (58%), Gaps = 39/697 (5%)

Query: 26  THMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVS 85
           TH+ Q +A++L     +          L+       +    +  A  +F + P P   + 
Sbjct: 89  THLNQIYAKLLVTGLQYGG-------FLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLW 141

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  +R  S      HA++++ +M    ++ D FSFP +LKA +    L  G +VHG   +
Sbjct: 142 NAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFR 201

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
            GF SD FVQ GLV +Y  CG+I+ A  +F ++  R IV W+ +I GY QNG   E L +
Sbjct: 202 HGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRI 261

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           F EM+ +NV PD + L  +L A +   +L +G+++H  +I   +  +  L  +L ++YA 
Sbjct: 262 FSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAK 321

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
           CG                                V  ARL F+Q+    LI W+AMISGY
Sbjct: 322 CG-------------------------------HVMVARLFFNQVENPSLIFWNAMISGY 350

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385
            +N + +EA++LF  M+   ++PD +T+ S I+ACA +G L+ A+ +  YI  + F  D+
Sbjct: 351 VKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDV 410

Query: 386 RVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDE 445
            VN ++ID YAKCGS++ AR VF+R+  ++V+ W++M+  + +HG  R ++I F+ M+  
Sbjct: 411 IVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQA 470

Query: 446 SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505
            + PN VTF+G+L AC ++GLV+EG ++F  M  +Y I P+++HY C+VDL GRA  L  
Sbjct: 471 GVSPNDVTFVGLLTACKNSGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDR 529

Query: 506 ALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565
           A   V  MP  P V +WG+L++AC++H  + L E+AA++L  LDP + G  V LSN+YA 
Sbjct: 530 AYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYAS 589

Query: 566 DKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISE 625
              W  V ++R  M+E+G+ K    S IE+N ++  F   D++H ++ +I+E++ ++   
Sbjct: 590 SCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERR 649

Query: 626 LKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDC 685
           LK AG+VP   S L DL  EE  E +  HSE+LA+ YGLIS+   + +RI KNLR C++C
Sbjct: 650 LKEAGFVPHTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNC 709

Query: 686 HNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           H  IKL+SK+ +REIV+RD  RFHH+KDG CSC DYW
Sbjct: 710 HAAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 267/709 (37%), Positives = 419/709 (59%), Gaps = 41/709 (5%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
           ++ I S +    +KQ HA++L L         L+ KL+  S S    T     +A  +F 
Sbjct: 25  ASLIDSATHKAQLKQIHARLLVLGLQF--SGFLITKLIHASSSFGDIT-----FARQVFD 77

Query: 76  QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
            +P P     N  IR  S ++  + AL ++  M    ++ D F+FP +LKA +    L  
Sbjct: 78  DLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQM 137

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY--RDIVPWSVMIDGY 193
           G  VH    +LGF +D FVQ GL+ +Y  C ++  AR +F+ +    R IV W+ ++  Y
Sbjct: 138 GRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAY 197

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
            QNG   E L +F  M+  +V+PD + L  +L+A +   +L  G ++H  ++   + ++ 
Sbjct: 198 AQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
            L  +L TMYA CG                               QV  A+++FD+M   
Sbjct: 258 DLLISLNTMYAKCG-------------------------------QVATAKILFDKMKSP 286

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
           +LI W+AMISGYA+N + +EA+ +F+EM    ++PD +++ S ISACA +G L+QA+ ++
Sbjct: 287 NLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMY 346

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
            Y+ ++ +  D+ +++A+IDM+AKCGS+E AR VF+R   R+V+ W++MI  + +HG AR
Sbjct: 347 EYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAR 406

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
            A+  +  M+   + PN VTF+G+L AC+H+G+V EG   F  M  ++ I P+ +HY C+
Sbjct: 407 EAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMA-DHKINPQQQHYACV 465

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553
           +DL GRA  L +A E+++ MP  P V +WG+L++AC+ H  +EL E+AA+QL  +DP + 
Sbjct: 466 IDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNT 525

Query: 554 GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTD 613
           G  V LSN+YA  + W  V E+R  MKE+G+ K+  CS +E+   +  F   D+SH + +
Sbjct: 526 GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYE 585

Query: 614 QIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCI 673
           +I  ++  + S LK  G+V +  ++L DL DEE  E +  HSE++A+ YGLIS+ + + +
Sbjct: 586 EIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPL 645

Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           RI KNLR C +CH   KL+SK+  REIV+RD  RFHH+KDGVCSC DYW
Sbjct: 646 RITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 205/431 (47%), Gaps = 47/431 (10%)

Query: 110 NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL 169
           N G+  D F    I  A  +A+      Q+H     LG     F+ T L+    + G I 
Sbjct: 15  NSGIHSDSFYASLIDSATHKAQL----KQIHARLLVLGLQFSGFLITKLIHASSSFGDIT 70

Query: 170 DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229
            AR +FD +    I PW+ +I GY +N  F + L ++  M+++ V PD      +L ACS
Sbjct: 71  FARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACS 130

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL--KNLVVS 287
              +L  G  VH  +       D  +Q+ LI +YA C  +  A+ +F+ + L  + +V  
Sbjct: 131 GLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSW 190

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           TA+VS Y++ G+                               P EAL++F+ M+   +K
Sbjct: 191 TAIVSAYAQNGE-------------------------------PMEALEIFSHMRKMDVK 219

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           PD V ++SV++A   L  L Q + IH  + K     +  +  ++  MYAKCG + +A+ +
Sbjct: 220 PDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKIL 279

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F++M+  N+I W +MI+ +A +G AR A+  F++M ++ + P+ ++    + AC+  G +
Sbjct: 280 FDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSL 339

Query: 468 DEGREIFASMTNEYNIPPKYEH----YGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
           ++ R ++     EY     Y         ++D+F +   + E   LV       +VV+W 
Sbjct: 340 EQARSMY-----EYVGRSDYRDDVFISSALIDMFAKCGSV-EGARLVFDRTLDRDVVVWS 393

Query: 524 SLMAACRVHGE 534
           +++    +HG 
Sbjct: 394 AMIVGYGLHGR 404


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 262/688 (38%), Positives = 400/688 (58%), Gaps = 35/688 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++F+++P          +  ++   R   A+K+FL M+ +GL+  +F+   +L + A 
Sbjct: 115 ARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAA 174

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD------- 182
            E    G +VH    KLG  S   V   ++ MYG CG    AR +F++M  R        
Sbjct: 175 TEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAM 234

Query: 183 ------------------------IVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPD 217
                                   IV W+ +I GY QNGL  + L  F  M   S + PD
Sbjct: 235 VSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPD 294

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           E  ++ +LSAC+  G +S G+ VH +I+ + +     + + LI+MYA  G ++ A+G+  
Sbjct: 295 EFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQ 354

Query: 278 KVLLK--NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           + ++   N++  TA++ GY + G ++ AR +FD M  +D++ W+AMI GY +N H  EA+
Sbjct: 355 QAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAM 414

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           +LF  M   G +P+  T+ +V+S CA L  L+  ++IH    ++       V+N+I+ MY
Sbjct: 415 ELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMY 474

Query: 396 AKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           A+ GSL  AR VF+R+  R+  ++WTSMI A A HG   +A+  F +M    + P+ +TF
Sbjct: 475 ARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITF 534

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           +GVL AC+H G VDEG+  F  + +++ I P+  HY CMVDL  RA L  EA E ++ MP
Sbjct: 535 VGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMP 594

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
             P+ + WGSL++ACRVH   +LAE AA++LL +DP + GA   LSN+Y+   RW D  +
Sbjct: 595 VEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAK 654

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           + K  K++ + KE   S   + N V+ F   D  H Q D +Y    ++  ++K AG+VPD
Sbjct: 655 IWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPD 714

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
           + S L D++DE K E++  HSEKLA+ +GL+S+ + + +RI+KNLRVC DCH  IK +SK
Sbjct: 715 LQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCNDCHTAIKFISK 774

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           V  REI++RD TRFHH+KDG CSCKDYW
Sbjct: 775 VADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 215/435 (49%), Gaps = 37/435 (8%)

Query: 153 FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS 212
           F    L+ +Y   G++ DAR +F +M  RD V W+VM+ G  + G F E + +F +M   
Sbjct: 97  FTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTD 156

Query: 213 NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
            + P +  L+ +LS+C+       G  VH F++   ++    + ++++ MY  CG  + A
Sbjct: 157 GLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETA 216

Query: 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
           + +F+++  +++    AMVS  +  G+++ A  +F+ M ++ ++ W+A+I+GY +N    
Sbjct: 217 RAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNA 276

Query: 333 EALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           +AL  F+ M     M PD+ T+ SV+SACA+LG++   +++H YI ++      +V NA+
Sbjct: 277 KALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNAL 336

Query: 392 IDMYAKCGSLES---------------------------------AREVFERMRRRNVIS 418
           I MYAK GS+E+                                 ARE+F+ M  R+V++
Sbjct: 337 ISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVA 396

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           WT+MI  +  +G    A+  F  M     +PN  T   VL  C+    ++ G++I     
Sbjct: 397 WTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAI 456

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
                         +V ++ R+  L  A  + + + +    V W S++ A   HG  E A
Sbjct: 457 RSLQ-EQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDA 515

Query: 539 EFAAKQLLQ--LDPD 551
               +++L+  + PD
Sbjct: 516 VGLFEEMLRVGVKPD 530



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 143/293 (48%), Gaps = 39/293 (13%)

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM-----AKGLF 276
           +++L  C  A N   G A+H   +   +   A+L + L++ YA            A+ LF
Sbjct: 27  ARLLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLF 86

Query: 277 DKV--LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
           D++    +N+    +++S Y+++G++ DAR +F +M E+D + W+ M+ G        EA
Sbjct: 87  DEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEA 146

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
           +K+F +M   G+ P + T+ +V+S+CA        +++H ++ K      + V N++++M
Sbjct: 147 IKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNM 206

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI------- 447
           Y KCG  E+AR VFERM  R+V SW +M++  A  G    AL  F  M D +I       
Sbjct: 207 YGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVI 266

Query: 448 -------------------------DPNGVTFIGVLYACSHAGLVDEGREIFA 475
                                     P+  T   VL AC++ G+V  G+++ A
Sbjct: 267 AGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHA 319


>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14820-like, partial [Brachypodium
           distachyon]
          Length = 498

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/478 (52%), Positives = 333/478 (69%)

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           +A ARA         HG+  ++G   D FV T LVG Y AC ++ +AR +FD M  RD+V
Sbjct: 1   RAAARARWTDTVRGTHGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLV 60

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W VM+D YF    + E L L  +MK S V PD+++L+ +LS C    +L  G+ +H +I
Sbjct: 61  AWGVMLDSYFNTQNYRETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYI 120

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
             +++ +DA L S LI MYA+C  M+MA  ++  +  K+LV STAMV GY++ G++E AR
Sbjct: 121 QVSDIFVDARLSSALINMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIAR 180

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            IF+ M EKD++ WSAMIS YAENN P E L LFN+MQ CG+ PD++TMLSVISACA++G
Sbjct: 181 SIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIG 240

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            LD+A+ IH  +  + F   L + NA+IDM++KCGSL  A  +F  M R+NVI+WTSMI 
Sbjct: 241 SLDKARWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIA 300

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
           AFA+HGD  +AL  F +MK E ++PNGVTF+ +LYAC HAGLV EGR +F  M  EY I 
Sbjct: 301 AFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIE 360

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           PK+EHYGCMVDL GRA L++EA++L+E+M   PNV IWGSL+AAC +HG+IEL EFAAK+
Sbjct: 361 PKHEHYGCMVDLMGRAKLMQEAVDLIESMHIRPNVAIWGSLLAACWMHGDIELGEFAAKK 420

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           +L+LDP+HDGA VLLSNI+AK   W +  +LR  MK  G+ KE   S +E+N  V+ F
Sbjct: 421 ILELDPNHDGAYVLLSNIHAKSGNWNNAQKLRVMMKVHGVSKETGYSWLELNCTVHGF 478



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 83/176 (47%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A SIF+ +        +  I A + +++P   L +F KM   G++ D  +   ++ A A 
Sbjct: 179 ARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACAN 238

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L +   +H +    GF     +   L+ M+  CG +  A  MF+ M  ++++ W+ M
Sbjct: 239 IGSLDKARWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRKNVITWTSM 298

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           I  +  +G     L LF +MK   VEP+ +    +L AC  AG +  G ++ E ++
Sbjct: 299 IAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFECML 354


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/707 (38%), Positives = 418/707 (59%), Gaps = 78/707 (11%)

Query: 40  HSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPK 99
           ++H++ + LL       F + +     L YA+S+F  IP P   + N   R  + S  P 
Sbjct: 4   NTHYAXSQLL------EFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPV 57

Query: 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
            ALK+++ M++ GL  + F+FP +LK+ A+++   EG Q+HG   KLGF  D +V T L+
Sbjct: 58  SALKLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLI 117

Query: 160 GMYGACGKILDARLMFDKMSYRDIVP-------------------------------WSV 188
            MY   G++ DA+ +FD+ S+RD+V                                W+ 
Sbjct: 118 SMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNA 177

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI GY + G + + L LF+EM  +NV+PDE  ++ ++SAC+++G++  G  VH +I D+ 
Sbjct: 178 MISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHG 237

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
                                             NL +  A++  YS+ G+VE A  + +
Sbjct: 238 FG-------------------------------SNLKIVNALIDLYSKCGEVETACELLE 266

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
            +  KD+I W+ +I GY   N  +EAL LF EM   G  P+ VTMLS++ ACAHLG +D 
Sbjct: 267 GLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDI 326

Query: 369 AQRIHLYIDKNAFGGDLRVNNA------IIDMYAKCGSLESAREVFERMR-RRNVISWTS 421
            + IH+YIDK   G  + V NA      +IDMYAKCG +++A +V +     R++ +W +
Sbjct: 327 GRWIHVYIDKKLKG--VVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNA 384

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI  FA+HG A  A   F++M+   I+P+ +TF+G+L ACSH+G++D GR IF SM  +Y
Sbjct: 385 MIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDY 444

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
           NI PK EHYGCM+DL G + L +EA E++ TMP  P+ VIW SL+ AC++HG +EL E  
Sbjct: 445 NITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESF 504

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE-RACSRIEMNNEVY 600
           AK+L++++P++ G+ VLLSNIYA   +W +V ++R  + ++G+ K+   CS IE+++ V+
Sbjct: 505 AKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVH 564

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
           EF+  D+ H Q  +IY  L E+   L+ AG+VPD    L ++E+E K   +  HSEKLA+
Sbjct: 565 EFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAI 624

Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTR 707
            +GLIS+K  + + IVKNLRVC +CH   KL+SK+Y REI+ RDRTR
Sbjct: 625 AFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTR 671


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/696 (40%), Positives = 410/696 (58%), Gaps = 46/696 (6%)

Query: 28  MKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNK 87
           ++Q HA  LK +  +H     +   LL  +S P    + L YA SIF +I        N 
Sbjct: 29  VEQLHAFSLKTAIFNHP---FVSSRLLALYSDPKI--NDLGYARSIFDRIQRRSLIHWNT 83

Query: 88  FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
            I+    +      + +F ++++E L  D F+ P ++K  AR   + EG Q+HGL  K+G
Sbjct: 84  IIKCYVENQFSHDGIVLFHELVHEYLP-DNFTLPCVIKGCARLGVVQEGKQIHGLALKIG 142

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207
           FGSD FVQ  LV MY  CG+I  AR +FD M  +D+V W+ +IDGY + G  D  L LFE
Sbjct: 143 FGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFE 202

Query: 208 EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           EM      P+                                  DA   + L+   + CG
Sbjct: 203 EM------PER---------------------------------DAFSWTVLVDGLSKCG 223

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
            ++ A+ LFD++  +NLV   AM++GY ++G  + A  +F QM   DL+ W+ MI+GY  
Sbjct: 224 KVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYEL 283

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
           N    +A+K+F  M   G +P   T++SV+SA + L VL + + IH Y++KN F  D  +
Sbjct: 284 NGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGIL 343

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
             ++I+MYAKCG +ESA  VF  ++++ V  WT++I    IHG A +AL  F +M    +
Sbjct: 344 GTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGL 403

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            PN + FIGVL AC+HAGLVD+GR+ F  M NEY I P  EHYGC+VD+  RA  L EA 
Sbjct: 404 KPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAK 463

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
             +E MP +PN VIW SL+   R HG+I++ E+AA++++++ P+  G  +LLSN+YA   
Sbjct: 464 NTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASG 523

Query: 568 RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627
            W+ V  +R+ M +RG  K+  CS +E    ++EF+  D SH QT +IY K++E+  +LK
Sbjct: 524 MWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLK 583

Query: 628 PAGYVPDIHSALVDLEDEEKREVILW-HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCH 686
             G+VPD    L+ +E E+++E  L  HSE+LA+ +GLI+ K    IRI+KNLRVC DCH
Sbjct: 584 CVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCH 643

Query: 687 NFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +  KL+SK+Y+REI++RD  RFHH+K+G CSC DYW
Sbjct: 644 SVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 276/719 (38%), Positives = 407/719 (56%), Gaps = 42/719 (5%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSH-SHHSQNSLLLKLLLTSFSLPTTTP 64
           +P+    L    A SS + L   K+ HAQ++     S     + L+ + +   S+     
Sbjct: 155 EPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDD--- 211

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
                A  +F  +        N  +   + S   + A ++F +M   GL  ++ SF  IL
Sbjct: 212 -----ARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSIL 266

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
                 E L  G  VH      G   D  V T L+ MY  CG I  AR +FD M  RD+V
Sbjct: 267 DGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVV 326

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+VMI+GY +NG  ++   LF  M+   ++PD +    I++AC+ + NL++   +H  +
Sbjct: 327 SWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQV 386

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
                                    D+A          +L+VSTA+V  Y++ G ++DAR
Sbjct: 387 -------------------------DIAG------FGTDLLVSTALVHMYAKCGAIKDAR 415

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            +FD M  +D++ WSAMI  Y EN +  EA + F+ M+   ++PD VT +++++AC HLG
Sbjct: 416 QVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLG 475

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            LD    I+    K      + + NA+I M AK GS+E AR +F+ M RR+VI+W +MI 
Sbjct: 476 ALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIG 535

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
            +++HG+AR AL  F++M  E   PN VTF+GVL ACS AG VDEGR  F  +     I 
Sbjct: 536 GYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIV 595

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P  + YGCMVDL GRA  L EA  L+++MP  P   IW SL+ ACR+HG +++AE AA++
Sbjct: 596 PTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAER 655

Query: 545 LLQLDPDHDGAL-VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
            L +DP +DGA+ V LS++YA    W++V ++RK M+ RGI KE+ C+ IE+  +V+ F+
Sbjct: 656 CLMIDP-YDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFV 714

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYG 663
             DRSH    +IY +L  +++ +K  GY+P   + L D+ +++K E I +HSEKLA+ YG
Sbjct: 715 VEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAYG 774

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           ++S    + IRI KNLRVC DCH+  K +SKV  REI+ RD +RFHH+KDGVCSC DYW
Sbjct: 775 VLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 143/478 (29%), Positives = 245/478 (51%), Gaps = 33/478 (6%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  IF  +        N  I   +     K A  +F +M++EGL     +F  +L A + 
Sbjct: 111 ARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSS 170

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
             GL  G +VH      GF SD  + T LV MY   G + DAR +FD +  RD+  ++VM
Sbjct: 171 PAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVM 230

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           + GY ++G +++   LF  M+   ++P+++    IL  C     L++G+AVH   ++  +
Sbjct: 231 VGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGL 290

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             D  + ++LI MY  CG ++ A+ +FD + ++++V  T M+ GY+  G +ED       
Sbjct: 291 VDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIED------- 343

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                                   A  LF  MQ  G++PD++T + +++ACA    L+ A
Sbjct: 344 ------------------------AFGLFATMQEEGIQPDRITYMHIMNACAISANLNHA 379

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + IH  +D   FG DL V+ A++ MYAKCG+++ AR+VF+ M RR+V+SW++MI A+  +
Sbjct: 380 REIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVEN 439

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G    A   F+ MK  +I+P+GVT+I +L AC H G +D G EI+       ++      
Sbjct: 440 GYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKA-DLVSHVPL 498

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
              ++ +  +   +  A  + +TM    +V+ W +++    +HG    A +   ++L+
Sbjct: 499 GNALIIMNAKHGSVERARYIFDTM-VRRDVITWNAMIGGYSLHGNAREALYLFDRMLK 555



 Score =  205 bits (521), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 217/453 (47%), Gaps = 40/453 (8%)

Query: 76  QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
           Q+P P +R  + F R +        A  V  ++   G  ID  ++  + +          
Sbjct: 23  QLPVPSARFRSTFTRRVG-------ANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAAL 75

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G QV     + G   + +    L+ +Y  CG + +AR +FD +  + +V W+ +I GY Q
Sbjct: 76  GKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQ 135

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
            G   E   LF +M    +EP  +    +L ACS    L++G+ VH  ++          
Sbjct: 136 VGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAG------- 188

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
                                    + +  + TA+VS Y + G ++DAR +FD +  +D+
Sbjct: 189 ------------------------FVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDV 224

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
             ++ M+ GYA++   ++A +LF  MQ  G+KP+K++ LS++  C     L   + +H  
Sbjct: 225 STFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQ 284

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
                   D+RV  ++I MY  CGS+E AR VF+ M+ R+V+SWT MI  +A +G+  +A
Sbjct: 285 CMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDA 344

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
              F  M++E I P+ +T++ ++ AC+ +  ++  REI  S  +             +V 
Sbjct: 345 FGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIH-SQVDIAGFGTDLLVSTALVH 403

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           ++ +   +++A ++ + MP   +VV W +++ A
Sbjct: 404 MYAKCGAIKDARQVFDAMP-RRDVVSWSAMIGA 435


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 256/624 (41%), Positives = 386/624 (61%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           K A+ +F +M+  G+  +  +   ++ A A+ + L  G QV     +L    +  +   L
Sbjct: 222 KEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNAL 281

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           V MY  CG I  AR +FD+   +++V ++ ++  Y + GL  EVL +  EM      PD 
Sbjct: 282 VDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDR 341

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           + +   +SACS   ++S G+  H +++ N +    ++ + +I MY  CG  +MA  +FD+
Sbjct: 342 ITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDR 401

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +L K  V   ++++G+ R G +E A  IF  M + DL+ W+ MI    + +  +EA++LF
Sbjct: 402 MLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELF 461

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
             MQ  G+  DKVTM+ V SAC +LG LD A+ IH YI K     D+ +  A++DM+A+C
Sbjct: 462 RVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARC 521

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G  +SA +VF +M +R+V +WT+ I A A+ G+   A+  F++M  + I P+GV F+ +L
Sbjct: 522 GDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALL 581

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            A SH GLV++G  IF SM + Y I P+  HYGCMVDL GRA LL EAL L+ +M   PN
Sbjct: 582 TALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPN 641

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
            VIWGSL+AACRVH  +++A +AA+++ +LDP+  G  VLLSNIYA   RW DV ++R  
Sbjct: 642 DVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLH 701

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           +KE+G  K    S IE+N +++EF T D SH +   I   L E+   L+  GYVPD+ + 
Sbjct: 702 LKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNV 761

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           L+D+ ++EK  ++  HSEKLA+ + LIS+ +   IR+ KNLR+C DCH+F KLVSK Y+R
Sbjct: 762 LLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSR 821

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EI++RD  RFH ++ G CSC DYW
Sbjct: 822 EIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  249 bits (637), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 195/682 (28%), Positives = 306/682 (44%), Gaps = 99/682 (14%)

Query: 8   TKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSL 67
           TK  + PT +    C ++T +KQ H+QI K   +HH    L L  L++S +   T  S  
Sbjct: 30  TKHRSSPTGS-FKKCKTMTELKQLHSQITKNGLNHHP---LSLTNLISSCTEMGTFESLE 85

Query: 68  YY--ALSIFSQIPA--PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
           Y   AL +F +         + +  IR  S       A+ VF +++  G   D F+FP +
Sbjct: 86  YAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFV 145

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L A  ++  L EG QVHG   K+GF  D FV+  L+  YG CG+I   R +FDKMS R++
Sbjct: 146 LSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNV 205

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           V W+ +I GY + G + E ++LF EM    + P+ + +  ++SAC++  +L  GE V   
Sbjct: 206 VSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTC 265

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           I +  + ++A + + L+ MY  CG +D A+ +FD+ + KNLV+   ++S Y R G     
Sbjct: 266 IGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLA--- 322

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
                                       +E L +  EM   G +PD++TMLS +SAC+ L
Sbjct: 323 ----------------------------REVLAVLGEMLKHGPRPDRITMLSAVSACSEL 354

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
             +   +  H Y+ +N   G   V NAII+MY KCG  E A  VF+RM  +  +SW S+I
Sbjct: 355 DDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLI 414

Query: 424 NAFAIHGDARNALIFFNKMKD-------------------------------ESIDPNGV 452
             F  +GD  +A   F+ M D                               E I  + V
Sbjct: 415 AGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKV 474

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
           T +GV  AC + G +D  + I   +  + +I         +VD+F R    + A+++   
Sbjct: 475 TMVGVASACGYLGALDLAKWIHGYIKKK-DIHFDMHLGTALVDMFARCGDPQSAMQVFNK 533

Query: 513 MPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL-------------- 558
           M    +V  W + + A  + G    A     ++LQ     DG + +              
Sbjct: 534 M-VKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQ 592

Query: 559 -------LSNIYAKDKRWQDVGELRKSMKERGILKERA----CSRIEMNNEVY-EFLTAD 606
                  + +IY    +    G +   +   G+L E        ++E N+ ++   L A 
Sbjct: 593 GWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAAC 652

Query: 607 RSHKQTDQIYEKLNEVISELKP 628
           R HK  D I     E ISEL P
Sbjct: 653 RVHKNVD-IAAYAAERISELDP 673


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/591 (41%), Positives = 376/591 (63%), Gaps = 6/591 (1%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR--LMFDKMSYRDIVPWSVMIDGYFQ 195
           QVH    + G     +V T L+ M       + +   L+F +++Y +   W+ MI GY  
Sbjct: 60  QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYAL 119

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH-EFIIDNNVALDAH 254
            GL  E  N +  M+   V P     S +  AC  A N+  G+ VH + I+    A D +
Sbjct: 120 QGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLY 179

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           + +++I +Y  CG +  A+ +FD++  +++V  T ++  Y++ G +E A  +FD +  KD
Sbjct: 180 VGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKD 239

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           ++ W+AM++GYA+N  P+EAL+ F +MQ  GM+ D+VT+  VISACA LG +  A  I  
Sbjct: 240 MVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRD 299

Query: 375 YIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
             +++ FG  G++ V +A+IDMY+KCGS + A +VFE M+ RNV S++SMI  +A+HG A
Sbjct: 300 IAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRA 359

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
            +AL  F+ M    I PN VTFIG+L ACSHAGLV++GR++FA M   + + P  +HY C
Sbjct: 360 HSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYAC 419

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           MVDL GRA  L EAL+LV+TMP  PN  +WG+L+ ACR+HG  ++A+ AA +L +L+P+ 
Sbjct: 420 MVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNG 479

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE-MNNEVYEFLTADRSHKQ 611
            G  +LLSNIYA   RW++V +LRK ++E+G  K   CS  E  N E+++F   D +H +
Sbjct: 480 IGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPR 539

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS 671
           + +I + L ++I  L+  GY P++ SA  DL D+EK  +++ HSEKLAL YGL+ ++   
Sbjct: 540 SSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGD 599

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            I+I+KN+R+CEDCHN +   S++  REI++RD  RFHH+ +G CSC ++W
Sbjct: 600 TIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 120/486 (24%), Positives = 217/486 (44%), Gaps = 76/486 (15%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTT 63
           L    K L     + +  C+  + +KQ HA I++   S  S     L  +LT   +P  +
Sbjct: 34  LQHQRKLLEWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGS 93

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
                Y L +F Q+  P   +    IR  +       +   + +M  +G+    F+F  +
Sbjct: 94  -----YPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSAL 148

Query: 124 LKAIARAEGLLEGMQVHGLGTKL-GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
            KA   A  +  G QVH     + GF SD +V   ++ +Y  CG +  AR +FD+MS RD
Sbjct: 149 FKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERD 208

Query: 183 I-------------------------------VPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
           +                               V W+ M+ GY QNG   E L  F++M+ 
Sbjct: 209 VVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQD 268

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH--LQSTLITMYANCGCM 269
             +E DE+ L+ ++SAC++ G + +   + +    +      +  + S LI MY+ CG  
Sbjct: 269 VGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSP 328

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
           D A  +F+ +  +N+   ++M+ GY+  G+                              
Sbjct: 329 DEAYKVFEVMKERNVFSYSSMILGYAMHGRA----------------------------- 359

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389
               AL+LF++M    ++P+KVT + ++SAC+H G+++Q +++   ++K  FG     ++
Sbjct: 360 --HSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEK-FFGVAPSPDH 416

Query: 390 --AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
              ++D+  + G LE A ++ + M    N   W +++ A  IHG+   A I  N++    
Sbjct: 417 YACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELF--K 474

Query: 447 IDPNGV 452
           ++PNG+
Sbjct: 475 LEPNGI 480


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 261/709 (36%), Positives = 416/709 (58%), Gaps = 41/709 (5%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
           ++ I S +    ++Q HA++L L              L+T     +++   + +A  +F 
Sbjct: 25  ASLIDSSTHKAQLRQIHARLLVLGLQFSG-------FLITKLIHASSSYGDITFARQVFD 77

Query: 76  QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
            +P P     N  IR  S ++  + AL ++ KM    ++ D F+FP +LKA      L  
Sbjct: 78  DLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQM 137

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY--RDIVPWSVMIDGY 193
           G  VH    +LGF +D FVQ GL+ +Y  C ++  AR +F+ +    R IV W+ ++  Y
Sbjct: 138 GRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAY 197

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
            QNG   E L +F +M+  +V+PD + L  +L+A +   +L  G ++H  ++   +  + 
Sbjct: 198 AQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEP 257

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
            L  +L TMYA CG                               QV  A+++FD+M   
Sbjct: 258 DLLISLNTMYAKCG-------------------------------QVATAKILFDKMKSP 286

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
           +LI W+AMISGYA+N   ++A+ LF+EM    ++PD +++ S ISACA +G L+QA+ + 
Sbjct: 287 NLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMD 346

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
            Y+ ++ +  D+ +++A+IDM+AKCGS+E AR VF+R   R+V+ W++MI  + +HG AR
Sbjct: 347 EYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAR 406

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
            A+  +  M+ + + PN VTF+G+L AC+H+G+V EG   F  M  ++ I P+ +HY C+
Sbjct: 407 EAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMA-DHKINPQQQHYACI 465

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553
           +DL GRA  L +A E+++ MP  P V +WG+L++AC+ H  +EL ++AA+QL  +DP + 
Sbjct: 466 IDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNT 525

Query: 554 GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTD 613
           G  V LSN+YA  + W  V E+R  MKE+G+ K+  CS +E+   +  F   D+SH + +
Sbjct: 526 GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYE 585

Query: 614 QIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCI 673
           +I  ++  + S LK  G+V +  ++L DL DEE  E +  HSE++ + YGLIS+ + + +
Sbjct: 586 EIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERITIAYGLISTPQGTTL 645

Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           RI KNLR C +CH   KL+SK+  REIV+RD  RFHH+KDGVCSC DYW
Sbjct: 646 RITKNLRACVNCHAATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 261/688 (37%), Positives = 413/688 (60%), Gaps = 35/688 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P P S      I   +   + ++A+ +F +M+++ +   +F+   +L + A 
Sbjct: 98  AHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAA 157

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY--------- 180
            E L  G +VH    K G  S   V   L+ MY   G  + A+++FD+M           
Sbjct: 158 VECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTM 217

Query: 181 ----------------------RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM-SNVEPD 217
                                 RD+V W+ MI GY Q+G   E L++F +M M S+ +PD
Sbjct: 218 ISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPD 277

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           +  L+  LSAC+   NL  G+ +H  II         + + LI+MY+  G +++A+ + +
Sbjct: 278 KFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIE 337

Query: 278 KVLLKNL--VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           + ++ NL  +  TA++ GY + G +  AR IFD +  +D++ W+AMI GY +N   Q+A+
Sbjct: 338 QSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAM 397

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           +LF  M   G KP+  T+ +++S  + L  LD  ++IH    ++     + V+NA+I MY
Sbjct: 398 ELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMY 457

Query: 396 AKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           AK GS+  AR VF  +  +R+ I+WTSMI A A HG    AL  F +M +  I P+ +T+
Sbjct: 458 AKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITY 517

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           +GVL AC+H GLV++GR  +  M N + I P   HY CM+DLFGRA LL+EA   +E MP
Sbjct: 518 VGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMP 577

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
             P+V+ WGSL+A+C+VH  +ELAE AA++LL ++P++ GA   L+N+Y+   +W++   
Sbjct: 578 IEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAAN 637

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           +RKSMK++G+ K++  S +++ N+V+ F   D  H Q D IYE + ++  E+K  G+VPD
Sbjct: 638 IRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPD 697

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
             S L DLE+E K +++  HSEKLA+ +GLI + +++ +RI+KNLRVC DCH+ IK +SK
Sbjct: 698 TESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISK 757

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +  REI++RD TRFHH+K+G+CSC+DYW
Sbjct: 758 LVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  210 bits (534), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 143/526 (27%), Positives = 255/526 (48%), Gaps = 49/526 (9%)

Query: 75  SQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL 134
           SQI   PS     F++       P     +  +++  GL +  F    ++   A+   + 
Sbjct: 6   SQILTSPSDPYTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIY 65

Query: 135 EGMQVHGLGTKLGFGSDP----FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
           +  +V        F   P    F    ++  Y   G++ +A  +F++M   D V W+ MI
Sbjct: 66  DAHRV--------FDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMI 117

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
            GY Q G F+  + +F EM   +V P +  L+ +L++C+    L  G  VH F++ + ++
Sbjct: 118 VGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLS 177

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
               + ++L+ MYA  G    AK +FD++ LK+      M+S + ++G V+ A++ F+QM
Sbjct: 178 SYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQM 237

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPDKVTMLSVISACAHLGVLDQA 369
           +E+D++ W+AMISGY ++   +EAL +F++M +    KPDK T+ S +SACA+L  L   
Sbjct: 238 IERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLG 297

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE--------------------------- 402
           ++IH +I +  F     V NA+I MY+K G +E                           
Sbjct: 298 KQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYV 357

Query: 403 ------SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
                  AR +F+ +R R+V++WT+MI  +  +G  ++A+  F  M  E   PN  T   
Sbjct: 358 KLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLAT 417

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           +L   S    +D GR+I AS T   N          ++ ++ ++  + +A  +   + + 
Sbjct: 418 MLSVSSSLASLDHGRQIHASATRSGN-ASSVSVSNALITMYAKSGSINDARWVFNLIHWK 476

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQ--LDPDHDGALVLLS 560
            + + W S++ A   HG  E A    +++L+  + PDH   + +LS
Sbjct: 477 RDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLS 522


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 269/707 (38%), Positives = 406/707 (57%), Gaps = 39/707 (5%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
           ++ I + +   H+ Q H +++     H+         L+T     ++    + YA  +F 
Sbjct: 60  ASLIDNSTHKRHLDQIHNRLVISGLQHNG-------FLMTKLVNGSSNLGQICYARKLFD 112

Query: 76  QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
           +   P   + N  IR+ S ++  +  ++++  M   G+  D F+FP +LKA         
Sbjct: 113 EFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGL 172

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
              +HG   K GFGSD FVQ GLV +Y  CG I  A+++FD + +R IV W+ +I GY Q
Sbjct: 173 SCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQ 232

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           NG   E L +F +M+ + V+PD + L  IL A +   +L  G ++H F+I   +  +  L
Sbjct: 233 NGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPAL 292

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
             +L   YA CG + +AK                                 FDQM   ++
Sbjct: 293 LISLTAFYAKCGLVTVAKSF-------------------------------FDQMKTTNV 321

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           I W+AMISGYA+N H +EA+ LF+ M    +KPD VT+ S + A A +G L+ AQ +  Y
Sbjct: 322 IMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDY 381

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
           + K+ +G D+ VN ++IDMYAKCGS+E AR VF+R   ++V+ W++MI  + +HG    A
Sbjct: 382 VSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEA 441

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
           +  ++ MK   + PN VTFIG+L AC+H+GLV EG E+F  M  ++ I P+ EHY C+VD
Sbjct: 442 INLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCM-KDFEIVPRNEHYSCVVD 500

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555
           L GRA  L EA   +  +P  P V +WG+L++AC+++  + L E+AA +L  LDP + G 
Sbjct: 501 LLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGH 560

Query: 556 LVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQI 615
            V LSN+YA    W  V  +R  M+E+G+ K+   S IE+N ++  F   D+SH    +I
Sbjct: 561 YVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEI 620

Query: 616 YEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRI 675
           +++L  +   LK  G+VP   S L DL  EEK E + +HSE++A+ YGLIS+   + +RI
Sbjct: 621 FDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRI 680

Query: 676 VKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            KNLR C +CH+ IKL+SK+  REI++RD  RFHH+KDG+CSC DYW
Sbjct: 681 TKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 240/640 (37%), Positives = 382/640 (59%), Gaps = 5/640 (0%)

Query: 88  FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
            I+A +   +   A +++ +ML  G++ +  +F  +L +    E L  G ++H   ++ G
Sbjct: 229 IIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERG 288

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL-----FDEV 202
             +D  V   L+ MY  C  + +AR +FD+MS RD++ WS MI GY Q+G       DEV
Sbjct: 289 LETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEV 348

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
             L E M+   V P+++    IL AC+  G L  G  +H  +      LD  LQ+ +  M
Sbjct: 349 FQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNM 408

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           YA CG +  A+ +F K+  KN+V  T+ +S Y + G +  A  +F +M  ++++ W+ MI
Sbjct: 409 YAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMI 468

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
           +GYA+N    +  +L + M+  G +PD+VT+++++ AC  L  L++ + +H    K    
Sbjct: 469 AGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLE 528

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            D  V  ++I MY+KCG +  AR VF++M  R+ ++W +M+  +  HGD   A+  F +M
Sbjct: 529 SDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRM 588

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
             E + PN +T   V+ ACS AGLV EGREIF  M  ++ + P+ +HYGCMVDL GRA  
Sbjct: 589 LKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGR 648

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
           L+EA E +++MP  P++ +W +L+ AC+ H  ++LAE AA  +L+L+P +    + LSNI
Sbjct: 649 LQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNI 708

Query: 563 YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
           YA+  RW D  ++R+ M +RG+ K+R  S IE++  ++ F+  D +H + D I+ +L  +
Sbjct: 709 YAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETL 768

Query: 623 ISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVC 682
             E+K AGY PD+   L D++D +K + +  HSEKLA+ YGL+ +   + IRI+KNLRVC
Sbjct: 769 TKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVC 828

Query: 683 EDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            DCH   K +SK+  REIV RD  RFH++ +G CSC D+W
Sbjct: 829 GDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 137/513 (26%), Positives = 248/513 (48%), Gaps = 41/513 (7%)

Query: 81  PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVH 140
           P+ VS   +  +  + R + A+++   +   GL ++  ++  +++  A+A    +G  VH
Sbjct: 20  PTSVSGGEVWRLCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVH 79

Query: 141 GLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
               +LG   D ++   L+  Y     +  A  +F +M+ RD+V WS MI  Y  N    
Sbjct: 80  KQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPA 139

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
           +  + FE M  +N+EP+ +    IL AC+    L  G  +H  +    +  D  + + LI
Sbjct: 140 KAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALI 199

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
           TM                               YS+ G++  A  +F +M E++++ W+A
Sbjct: 200 TM-------------------------------YSKCGEISVACEVFHKMTERNVVSWTA 228

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           +I   A++    EA +L+ +M   G+ P+ VT +S++++C     L++ +RIH +I +  
Sbjct: 229 IIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERG 288

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI--- 437
              D+ V NA+I MY KC S++ ARE+F+RM +R+VISW++MI  +A  G      I   
Sbjct: 289 LETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEV 348

Query: 438 --FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
                +M+ E + PN VTF+ +L AC+  G +++GR+I A ++ +            + +
Sbjct: 349 FQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELS-KVGFELDRSLQTAIFN 407

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555
           ++ +   + EA ++   M    NVV W S ++     G++  AE   K   ++   +  +
Sbjct: 408 MYAKCGSIYEAEQVFSKMA-NKNVVAWTSFLSMYIKCGDLSSAE---KVFSEMPTRNVVS 463

Query: 556 LVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
             L+   YA++     V EL  SMK  G   +R
Sbjct: 464 WNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDR 496



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 228/496 (45%), Gaps = 59/496 (11%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++        +  I A + ++ P  A   F +M +  +  +R +F  ILKA   
Sbjct: 110 AEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNN 169

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L +G ++H +   +G  +D  V T L+ MY  CG+I  A  +F KM+ R++V W+ +
Sbjct: 170 YSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAI 229

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I    Q+   +E   L+E+M  + + P+ +    +L++C+    L+ G  +H  I +  +
Sbjct: 230 IQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGL 289

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             D  + + LITMY  C  +  A+ +FD++  ++++  +AM++GY++             
Sbjct: 290 ETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQ------------- 336

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                        SGY +     E  +L   M+  G+ P+KVT +S++ AC   G L+Q 
Sbjct: 337 -------------SGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQG 383

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS-------- 421
           ++IH  + K  F  D  +  AI +MYAKCGS+  A +VF +M  +NV++WTS        
Sbjct: 384 RQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKC 443

Query: 422 -----------------------MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
                                  MI  +A +GD        + MK E   P+ VT I +L
Sbjct: 444 GDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITIL 503

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            AC     ++ G+ + A    +  +         ++ ++ +   + EA  + + M    +
Sbjct: 504 EACGALAGLERGKLVHAEAV-KLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMS-NRD 561

Query: 519 VVIWGSLMAACRVHGE 534
            V W +++A    HG+
Sbjct: 562 TVAWNAMLAGYGQHGD 577


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 284/746 (38%), Positives = 417/746 (55%), Gaps = 74/746 (9%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS-LYYALS 72
           P    +  C ++   KQ H+ I+K        N++ ++  L  F     +PS  L YALS
Sbjct: 30  PYLNLLEKCKNINTFKQIHSLIIKTG----LNNTVFVQSKLIHFC--AVSPSGDLSYALS 83

Query: 73  IFSQIPAPPSR---VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           +F +          + N  IR  S S  P  +L +F +ML  G+  +  +FP + K+  +
Sbjct: 84  LFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTK 143

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD------- 182
           A+   EG Q+H    KL    +P V T ++ MY + G++  ARL+FDK S RD       
Sbjct: 144 AKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTAL 203

Query: 183 ------------------------IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
                                   +V W+ MI GY Q+G F+E +  F EM+ +NV P++
Sbjct: 204 ITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNK 263

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
             +  +LSAC    +   G+ +  ++ DN    +  L + LI MY  C C          
Sbjct: 264 STMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMY--CKC---------- 311

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
                              G+ + AR +FD + EKD+I W+ MI GY+  +  +EAL LF
Sbjct: 312 -------------------GETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALF 352

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG-DLRVNNAIIDMYAK 397
             M    +KP+ VT L ++ ACA LG LD  + +H YIDKN     +  +  ++IDMYAK
Sbjct: 353 EVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAK 412

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI-DPNGVTFIG 456
           CG +E+A  VF  M  RN+ SW +M++ FA+HG A  AL  F++M ++ +  P+ +TF+G
Sbjct: 413 CGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVG 472

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           VL AC+ AGLVD G + F SM  +Y I PK +HYGCM+DL  RA    EA  L++ M   
Sbjct: 473 VLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEME 532

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
           P+  IWGSL++AC+ HG +E  E+ A++L QL+P++ GA VLLSNIYA   RW DV  +R
Sbjct: 533 PDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIR 592

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
             + ++G+ K   C+ IE++ +V+EFL  D+ H + + IY+ LNEV   L+  G+VP+  
Sbjct: 593 TRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTS 652

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
             L D+++E K   +  HSEKLA+ +GLI +K  + IRIVKNLRVC +CH+  KL+SK++
Sbjct: 653 EVLYDMDEEWKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIF 712

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
            REI+ RDR RFHH+KDG CSC D W
Sbjct: 713 NREIIARDRNRFHHFKDGFCSCNDCW 738


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 285/784 (36%), Positives = 427/784 (54%), Gaps = 93/784 (11%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALS-------IFSQ 76
           SL   K  H  +LK  H  H  N       LT+F +P      LY A S       +F +
Sbjct: 24  SLFRGKLIHQHLLKCLHRTHETN-------LTNFDVPFEKLVDLYIACSELKIARHVFDK 76

Query: 77  IPAPPSRVS--NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL 134
           +P  P  V   N  IRA +W+   + A+ ++ KML  G+T +RF+FP +LKA +  +   
Sbjct: 77  MPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEAS 136

Query: 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY- 193
           EG ++H    +L   S+ +V T LV  Y  CG + DA+ +FDKM  RD+V W+ MI G+ 
Sbjct: 137 EGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFS 196

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
              G +DEV  L  +M+ ++V P+   +  +L A ++  +L +G+ +H F +      D 
Sbjct: 197 LHEGSYDEVARLLVQMQ-NDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDV 255

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKV-LLKNLVVSTAMVSGYSRAGQVEDARLIFDQ--M 310
            + + ++ +Y  C C+D A+ +FD + ++KN V  +AMV  Y     + +A  +F Q  M
Sbjct: 256 VVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLM 315

Query: 311 VEKDLICWSA----------------------------------------MISGYAENNH 330
           ++ D+I  SA                                        ++S YA+   
Sbjct: 316 LKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGI 375

Query: 331 PQEALKLFN-------------------------------EMQVCGMKPDKVTMLSVISA 359
              A++ FN                               EMQ+ G+ P+K T+ SV+ A
Sbjct: 376 INGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPA 435

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           CAHL  L      H Y     F  D  + NA+IDMYAKCG +++AR+VF+RM +R ++SW
Sbjct: 436 CAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSW 495

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            +MI A+ IHG    AL+ F+ M+ E + P+ VTFI ++ ACSH+GLV EG+  F +MT 
Sbjct: 496 NTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQ 555

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
           ++ I P+ EHY CMVDL  RA L +E    +E MP  P+V +WG+L++ACRV+  +EL E
Sbjct: 556 DFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGE 615

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
             +K++ +L P+  G  VLLSN+Y+   RW D  ++R + KE+G  K   CS IE++  V
Sbjct: 616 GVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVV 675

Query: 600 YEFLTAD-RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           + FL    RSH Q  QI  KL+E++ E+K  GY  +      D+E+EEK  V+L+HSEKL
Sbjct: 676 HTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKL 735

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+ +G++S   D  I + KNLRVC DCH  IK +S V  R+I +RD +RFHH+KDG+C+C
Sbjct: 736 AIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDGICNC 795

Query: 719 KDYW 722
            D+W
Sbjct: 796 GDFW 799


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 253/610 (41%), Positives = 381/610 (62%), Gaps = 5/610 (0%)

Query: 114 TIDRFS-FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR 172
           T DRF         I +++ +   +Q+H    + G   +P +   L   Y A G++  + 
Sbjct: 40  TSDRFQEVERFASLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSV 99

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
            +F+     ++  +S +I  + Q+ LFD     + +M    VEP+    S +L +CS   
Sbjct: 100 FVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS--- 156

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
            L  G+ +H   I   +  D ++++ L+ +YA  G +  A+ LFDK+  ++LV  T M++
Sbjct: 157 -LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLT 215

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
            YS+ G+++ AR +F+ M E+D++CW+ MI GYA++  P E+LKLF  M V    P++VT
Sbjct: 216 CYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVT 275

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           +L+V+SAC  LG L+  + IH YI+      ++ V  A+IDMY+KCGSLE AR VF+R+R
Sbjct: 276 VLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIR 335

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
            ++V++W SMI  +A+HG +++AL  F +M +    P  +TFIG+L AC H GLV+EGR 
Sbjct: 336 DKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRS 395

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
            F  M ++Y I PK EHYGCMV+L GRA  L EA  LV+ M  A + V+WG+L+  CR+H
Sbjct: 396 FFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLH 455

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
             I+L E  AK L+     + G  VLLSN+YA    W+ V ++R  MKE GI KE  CS 
Sbjct: 456 VNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSS 515

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652
           IE++N+V+EF+  +R H ++ +IY  LNE+ S LK  GY P     L DL +E+K + + 
Sbjct: 516 IEVDNKVHEFVAGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLE 575

Query: 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712
            HSEKLA+ +GLIS+K  + ++IVKNLRVC DCH  +K++S++  R+IV+RDR RFHH++
Sbjct: 576 VHSEKLAIAFGLISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFE 635

Query: 713 DGVCSCKDYW 722
           DG+CSC DYW
Sbjct: 636 DGLCSCGDYW 645



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 203/447 (45%), Gaps = 75/447 (16%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
           ++ I    S+ H+ Q HA +L+    H   N +L   L  S++       S++    +F+
Sbjct: 51  ASLIDKSKSVAHLLQIHASLLRRGLYH---NPILNFKLQRSYAALGRLDCSVF----VFN 103

Query: 76  QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
               P     +  I +   S     A   + +ML+ G+  + F+F  +LK+ +    L  
Sbjct: 104 TFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LES 159

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK------------------ 177
           G  +H    KLG GSD +V+TGLV +Y   G ++ AR +FDK                  
Sbjct: 160 GKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSK 219

Query: 178 -------------MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
                        M  RD+V W+VMI GY Q+G+ +E L LF  M ++   P+E+ +  +
Sbjct: 220 MGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAV 279

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           LSAC + G L  G  +H +I +  + ++ H+ + LI MY+ CG ++ A+ +FD++  K++
Sbjct: 280 LSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDV 339

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
           V   +M+ GY+  G                                 Q AL+LF EM   
Sbjct: 340 VAWNSMIVGYAMHG-------------------------------FSQHALQLFEEMTET 368

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
           G KP  +T + ++SAC H G++++ +    L  DK      +     ++++  + G LE 
Sbjct: 369 GHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEE 428

Query: 404 AREVFERMR-RRNVISWTSMINAFAIH 429
           A  + + M    + + W +++    +H
Sbjct: 429 AYGLVKNMTIAADPVLWGTLLGCCRLH 455


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/631 (39%), Positives = 395/631 (62%), Gaps = 5/631 (0%)

Query: 97   RPKHALKVFLKMLNE-GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQ 155
            + + AL+++  M +E G+  D+F+F  +L   A      +G Q+H    +     +  V+
Sbjct: 458  KAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVE 517

Query: 156  TGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
            T LV MY  CG++  A+ +F++M+ R+   W+ MI+GY QNG   E L LF++M+++ ++
Sbjct: 518  TELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIK 577

Query: 216  PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
            PD   LS +LS+C    +   G  +H FI+ N +  +  LQ  L+ MYA CG MD A  +
Sbjct: 578  PDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKV 637

Query: 276  FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
            +D+ + K+++++  MVS +  +G+  DA+ +FDQM +++   W+++++GYA     +E+ 
Sbjct: 638  YDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESF 697

Query: 336  KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF-GGDLRVNNAIIDM 394
              F EM    ++ D +TM+++++ C+ L  L+   ++H  I K  F    + +  A++DM
Sbjct: 698  NHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDM 757

Query: 395  YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
            Y+KCG++  AR VF+ M  +N++SW +MI+ ++ HG ++ ALI + +M  + + PN VTF
Sbjct: 758  YSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTF 817

Query: 455  IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
            + +L ACSH GLV+EG  IF SM  +YNI  K EHY CMVDL GRA  L +A E VE MP
Sbjct: 818  LAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMP 877

Query: 515  FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
              P V  WG+L+ ACRVH ++++   AA++L +LDP + G  V++SNIYA   RW++V +
Sbjct: 878  IEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVED 937

Query: 575  LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
            +R+ MK +G+ K+   S IE+N+E+  F    ++H +T++IY  L  +  + K  GY+PD
Sbjct: 938  IRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPD 997

Query: 635  IHSALVDLED---EEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKL 691
                L +++D   EE+ E +L HSE+LAL  GLIS  K S IR+ KNLR+C DCH   K 
Sbjct: 998  TSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKF 1057

Query: 692  VSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            +SK+  R I+ RD  RFHH+++G CSC DYW
Sbjct: 1058 ISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 164/666 (24%), Positives = 292/666 (43%), Gaps = 64/666 (9%)

Query: 8   TKPLT----LPTSTAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           TKP +    LP S+ I  C   +S    K  H Q++  S+ ++    L+ K+L+      
Sbjct: 63  TKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMI--SNGYNPDAYLMTKILM--LYAR 118

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
           +     L YA  +F ++P       N  I A +        L+++ +M   G   D+F+F
Sbjct: 119 SGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTF 178

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
           P ++KA    E +    Q+     K G   + FV   LV  Y   G + DA    D++  
Sbjct: 179 PSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEG 238

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
             +V W+ +I GY +   ++E   +F+ M    V PD    +  L  C    +   G+ V
Sbjct: 239 TSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQV 298

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H  +I      D  + + LI MYA C   +    +FD++  +N V   +++S  ++ G  
Sbjct: 299 HSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFG-- 356

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
                                        H  +AL LF  MQ  G K ++  + S++ A 
Sbjct: 357 -----------------------------HFNDALVLFLRMQESGYKSNRFNLGSILMAS 387

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           A L  + + + +H ++ +N    D+ + +A++DMY+KCG +E A +VF  +  RN +S+ 
Sbjct: 388 AGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYN 447

Query: 421 SMINAFAIHGDARNALIFFNKMKDE-SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           +++  +   G A  AL  ++ M+ E  I P+  TF  +L  C++    ++GR+I A +  
Sbjct: 448 ALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIR 507

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE--L 537
             NI         +V ++     L  A E+   M    N   W S++   + +GE +  L
Sbjct: 508 A-NITKNIIVETELVHMYSECGRLNYAKEIFNRMA-ERNAYSWNSMIEGYQQNGETQEAL 565

Query: 538 AEFAAKQLLQLDPDHDGALVLLSNI--YAKDKRWQDVGE--LRKSMKERGILKERACSRI 593
             F   QL  + PD      +LS+    +  ++ +++    +R +M+E GIL+      +
Sbjct: 566 RLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQ------V 619

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEK---LNEV-ISELKPAGYVPDIHSALVDLEDEEKRE 649
            + +   +  + D + K  DQ  +K   LN V +S    +G   D  +     +  E+R 
Sbjct: 620 VLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNL---FDQMEQRN 676

Query: 650 VILWHS 655
             LW+S
Sbjct: 677 TALWNS 682



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 133/286 (46%), Gaps = 6/286 (2%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++F Q+    + + N  +   +     K +   FL+ML   +  D  +   I+   + 
Sbjct: 665 AKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSS 724

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFV-QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
              L  G Q+H L  K GF +   V +T LV MY  CG I  AR +FD M+ ++IV W+ 
Sbjct: 725 LPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNA 784

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII-DN 247
           MI GY ++G   E L L+EEM    + P+E+    ILSACS  G +  G  +   +  D 
Sbjct: 785 MISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDY 844

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED-ARLI 306
           N+   A   + ++ +    G ++ AK   +K+ ++  V +   + G  R  +  D  RL 
Sbjct: 845 NIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLA 904

Query: 307 FDQMVEKDLIC---WSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
             ++ E D      +  M + YA     +E   +   M++ G+K D
Sbjct: 905 AQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKD 950


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/591 (41%), Positives = 376/591 (63%), Gaps = 6/591 (1%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR--LMFDKMSYRDIVPWSVMIDGYFQ 195
           QVH    + G     +V T L+ M       + +   L+F +++Y +   W+ MI GY  
Sbjct: 60  QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYAL 119

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH-EFIIDNNVALDAH 254
            GL  E  N +  M+   V P     S +  AC  A N+  G+ VH + I+    A D +
Sbjct: 120 QGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLY 179

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           + +++I +Y  CG +  A+ +FD++  +++V  T ++  Y++ G +E A  +FD +  KD
Sbjct: 180 VGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKD 239

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           ++ W+AM++GYA+N  P+EAL+ F +MQ  GM+ D+VT+  VISACA LG +  A  I  
Sbjct: 240 MVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRD 299

Query: 375 YIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
             +++ FG  G++ V +A+IDMY+KCGS + A +VFE M+ RNV S++SMI  +A+HG A
Sbjct: 300 IAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRA 359

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
            +AL  F+ M    I PN VTFIG+L ACSHAGLV++GR++FA M   + + P  +HY C
Sbjct: 360 HSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYAC 419

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           MVDL GRA  L EAL+LV+TMP  PN  +WG+L+ ACR+HG  ++A+ AA +L +L+P+ 
Sbjct: 420 MVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNG 479

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE-MNNEVYEFLTADRSHKQ 611
            G  +LLSNIYA   RW++V +LRK ++E+G  K   CS  E  N E+++F   D +H +
Sbjct: 480 IGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPR 539

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS 671
           + +I + L ++I  L+  GY P++ SA  DL D+EK  +++ HSEKLAL YGL+ ++   
Sbjct: 540 SSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGD 599

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            I+I+KN+R+CEDCHN +   S++  REI++RD  RFHH+ +G CSC ++W
Sbjct: 600 TIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 120/486 (24%), Positives = 217/486 (44%), Gaps = 76/486 (15%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTT 63
           L    K L     + +  C+  + +KQ HA I++   S  S     L  +LT   +P  +
Sbjct: 34  LQHQRKLLEWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGS 93

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
                Y L +F Q+  P   +    IR  +       +   + +M  +G+    F+F  +
Sbjct: 94  -----YPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSAL 148

Query: 124 LKAIARAEGLLEGMQVHGLGTKL-GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
            KA   A  +  G QVH     + GF SD +V   ++ +Y  CG +  AR +FD+MS RD
Sbjct: 149 FKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERD 208

Query: 183 I-------------------------------VPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
           +                               V W+ M+ GY QNG   E L  F++M+ 
Sbjct: 209 VVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQD 268

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH--LQSTLITMYANCGCM 269
             +E DE+ L+ ++SAC++ G + +   + +    +      +  + S LI MY+ CG  
Sbjct: 269 VGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSP 328

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
           D A  +F+ +  +N+   ++M+ GY+  G+                              
Sbjct: 329 DEAYKVFEVMKERNVFSYSSMILGYAMHGRA----------------------------- 359

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389
               AL+LF++M    ++P+KVT + ++SAC+H G+++Q +++   ++K  FG     ++
Sbjct: 360 --HSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEK-FFGVAPSPDH 416

Query: 390 --AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
              ++D+  + G LE A ++ + M    N   W +++ A  IHG+   A I  N++    
Sbjct: 417 YACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELF--K 474

Query: 447 IDPNGV 452
           ++PNG+
Sbjct: 475 LEPNGI 480


>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
          Length = 655

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 249/501 (49%), Positives = 344/501 (68%), Gaps = 5/501 (0%)

Query: 119 SFPPILKAIARAEGLLEGMQV---HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           + P +L++ AR EG   G  V   H L  + G   D FV T L G Y ACG + D R +F
Sbjct: 151 ALPALLRSAARCEG--AGAYVAATHALAVRTGALDDGFVGTALAGAYAACGCVRDTRKVF 208

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           D M+ RD+V W VM+D Y Q   + E L LF +MK S V PD+++L+ +L AC    +L 
Sbjct: 209 DGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQLILATVLPACGHIRHLR 268

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G+A+H +++ +++ + AH+ S LI++YA+C  M+MA+ L++++  K+LV STAMVSGY+
Sbjct: 269 IGKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYA 328

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           R  +VE AR IFD M EKD++ WSAMISGY ++N P EAL LFN MQ CG++ D++TMLS
Sbjct: 329 RNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLS 388

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           VISACA+LG LD+A+ IH +I  +     L + NA+IDM+AKCG +  A  VF  M  +N
Sbjct: 389 VISACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLKN 448

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           VI+WTSMI+AFA+HGD +++L  F +MKDE  +PN VTF+ +LYAC HAGLV EGR +F+
Sbjct: 449 VITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLVHEGRLLFS 508

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           SM  +Y I PK+EHYGCMVDL GRA L++EA+ L+E+M   PNV IWGSL+AAC +HG++
Sbjct: 509 SMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLIESMHLEPNVPIWGSLLAACWMHGDL 568

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           +L  FAAK++LQLDP+HDGA VLL  IY K     +  E+R  MK   + KE   S +E+
Sbjct: 569 KLGAFAAKKILQLDPNHDGASVLLLKIYMKSDNLNNAQEVRGVMKLHRVSKETGLSWMEL 628

Query: 596 NNEVYEFLTADRSHKQTDQIY 616
           N   +EF      H ++ +I+
Sbjct: 629 NEPFHEFAAGGEKHPESGKIF 649



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 179/388 (46%), Gaps = 72/388 (18%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG--LGTKLGFGSDPFVQT 156
           K AL +F KM N G+  D+     +L A      L  G  +H   L + +  G+   + +
Sbjct: 233 KEALLLFAKMKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGA--HISS 290

Query: 157 GLVGMYGACG-------------------------------KILDARLMFDKMSYRDIVP 185
            L+ +Y +C                                K+  AR +FD M  +D+V 
Sbjct: 291 ALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVS 350

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           WS MI GY  +   +E L+LF  M+   +  DE+ +  ++SAC+  G+L   + +H FI 
Sbjct: 351 WSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIK 410

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
           ++ +    H+ + LI M+A CG +++A  +F+++ LKN++  T+M+S ++  G       
Sbjct: 411 NSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGD------ 464

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
                                     + +L+LF +M+  G +P++VT LS++ AC H G+
Sbjct: 465 -------------------------GKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGL 499

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSM 422
           + + + +   + +  +G + +  +   ++D+  +   ++ A  + E M    NV  W S+
Sbjct: 500 VHEGRLLFSSMVQQ-YGIEPKHEHYGCMVDLLGRAKLMQEAVSLIESMHLEPNVPIWGSL 558

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPN 450
           + A  +HGD +  L  F   K   +DPN
Sbjct: 559 LAACWMHGDLK--LGAFAAKKILQLDPN 584



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 75/169 (44%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A SIF  +P       +  I     S++P  AL +F  M   G+  D  +   ++ A A 
Sbjct: 336 ARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVISACAN 395

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L +   +H      G      +   L+ M+  CG I  A  +F++M  ++++ W+ M
Sbjct: 396 LGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSM 455

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
           I  +  +G     L LFE+MK    EP+E+    +L AC  AG +  G 
Sbjct: 456 ISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLVHEGR 504


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/587 (42%), Positives = 362/587 (61%), Gaps = 33/587 (5%)

Query: 138 QVHGLGTKLGFG-SDPFVQTGLV-GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           Q+H    + G   ++P +   L+  +   C  +  A  +F ++   +I  W+ MI GY +
Sbjct: 58  QIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAE 117

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           +      L L+ +M +S +EPD      +L A ++  ++  GE VH   I N       +
Sbjct: 118 SENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFV 177

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
           Q+TL+ MYA CG                                 E A  +F+ M E++L
Sbjct: 178 QNTLVHMYAACG-------------------------------HAESAHKLFELMAERNL 206

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + W+++I+GYA N  P EAL LF EM + G++PD  TM+S++SACA LG L   +R H+Y
Sbjct: 207 VTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 266

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
           + K    G+L   NA++D+YAKCGS+  A +VF+ M  ++V+SWTS+I   A++G  + A
Sbjct: 267 MVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEA 326

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
           L  F +++ + + P+ +TF+GVLYACSH G+VDEG + F  M  EY I PK EHYGCMVD
Sbjct: 327 LELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVD 386

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555
           L GRA L+++A E ++ MP  PN V+W +L+ AC +HG + L E A  QLLQL+P H G 
Sbjct: 387 LLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGD 446

Query: 556 LVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQI 615
            VLLSN+YA ++RW DV ++R++M   G+ K    S +E+ N ++EF+  DRSH QT++I
Sbjct: 447 YVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEI 506

Query: 616 YEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRI 675
           Y KL E+   LK  GYVP I + L D+E+EEK   + +HSEK+A+ + LI++     IR+
Sbjct: 507 YVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRV 566

Query: 676 VKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           VKNLRVC DCH  IKL+SKV+ REIV+RDR+RFHH+KDG CSCKDYW
Sbjct: 567 VKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 134/441 (30%), Positives = 219/441 (49%), Gaps = 52/441 (11%)

Query: 1   MSTLSQPTKPLTLPTSTAIS---SC-SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTS 56
           +ST + P  P +      I+   SC SS    +Q HA    + H     N  + K L+ +
Sbjct: 25  ISTSTCPESPKSYILKKCIALLLSCASSKFKFRQIHA--FSIRHGVPLTNPDMGKYLIFT 82

Query: 57  FSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTID 116
             L   +P S  YA  IFSQI  P     N  IR  + S  P  AL+++ +M    +  D
Sbjct: 83  L-LSFCSPMS--YAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPD 139

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
             ++P +LKAIA+   + EG +VH +  + GF S  FVQ  LV MY ACG    A  +F+
Sbjct: 140 THTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFE 199

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
            M+ R++V W+ +I+GY  NG  +E L LF EM +  VEPD   +  +LSAC+  G L+ 
Sbjct: 200 LMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALAL 259

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G   H +++   +  + H  + L+ +YA CG +  A  +FD                   
Sbjct: 260 GRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFD------------------- 300

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
                       +M EK ++ W+++I G A N   +EAL+LF E++  G+ P ++T + V
Sbjct: 301 ------------EMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGV 348

Query: 357 ISACAHLGVLDQA----QRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFER 410
           + AC+H G++D+     +R+     K  +G   ++ +   ++D+  + G ++ A E  + 
Sbjct: 349 LYACSHCGMVDEGFDYFKRM-----KEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQN 403

Query: 411 M-RRRNVISWTSMINAFAIHG 430
           M  + N + W +++ A  IHG
Sbjct: 404 MPMQPNAVVWRTLLGACTIHG 424


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 269/704 (38%), Positives = 404/704 (57%), Gaps = 67/704 (9%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           +  C S+  +KQ H+  +K+  S    +  L +  + +F     +  ++ YA  +F  IP
Sbjct: 14  LEKCKSMYQLKQIHSHTIKMGLS----SDPLFRNRVIAFCCAHES-GNMNYAHQVFDTIP 68

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P   + N  I+  S    P++ + ++L ML   +  DRF+FP  LK   R   L  G +
Sbjct: 69  HPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKE 128

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +     K GF S+ FVQ   + M+  CG +  A  +FD     ++V W++M+ GY     
Sbjct: 129 LLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGY----- 183

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
                N  ++ K+S     +M+L  +LSACS+  +L +G+ + ++I   N  +  H    
Sbjct: 184 -----NRVKQFKIS-----KMLL--VLSACSKLKDLEWGKHIFKYI---NGGIVEH---- 224

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
              M+A CG MD A+G                               +FD M  +D++ W
Sbjct: 225 ---MFAACGEMDEAQG-------------------------------VFDNMKTRDVVSW 250

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +AMI GY   NH   AL LF EMQ+  +KPD+ TM+S++ ACA LG L+  + +   IDK
Sbjct: 251 TAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCIDK 310

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
           N+   D  V NA++DMY KCG++  A++VF+ M +++  +WT+MI   AI+G    AL  
Sbjct: 311 NSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAM 370

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F+ M + S+ P+ +T+IGVL AC    +VD+G+  F +MT ++ I P   HYGCMVDL G
Sbjct: 371 FSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLG 426

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558
               L EALE++  MP  PN ++WGS + ACRVH  ++LA+ AAKQ+L+L+P++    VL
Sbjct: 427 CVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVYVL 486

Query: 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEK 618
           L NIYA  K+W+++ ++RK M ERGI K   CS +E+N  VYEF+  D+SH Q+ +IY K
Sbjct: 487 LCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAK 546

Query: 619 LNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKN 678
           L  ++  L  AGY PD     +DL +E+K   +  HSEKLA+ Y LISS     IRIVKN
Sbjct: 547 LENMMQGLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGVTIRIVKN 606

Query: 679 LRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LR+C DCH+  KLVS+ Y RE++++D+TRFHH++ G CSC ++W
Sbjct: 607 LRMCVDCHHMAKLVSQAYNRELIVKDKTRFHHFRHGSCSCNNFW 650


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 277/733 (37%), Positives = 414/733 (56%), Gaps = 69/733 (9%)

Query: 20  SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA 79
           SS  S +  KQ HAQIL+ S    S    LL  +L+ +S      + L+ +L IF+ +P+
Sbjct: 16  SSVKSKSQAKQLHAQILRTSLPSPS----LLSTILSIYS----NLNLLHDSLLIFNSLPS 67

Query: 80  PPSRVSNKFIRAISWSHRP-KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
           PP+ ++ K I     SH    H+L  F++ML  G   D   FP +LK+    + L  G  
Sbjct: 68  PPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGES 127

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGAC---------------GKILDA------------ 171
           VHG   +LG G D +    L+ MY                  GK  D             
Sbjct: 128 VHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLG 187

Query: 172 --RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229
             R +F+ M  RDIV W+ +I G  QNG+ ++ L +  EM  +++ PD   LS +L   +
Sbjct: 188 SLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFA 247

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
              NL  G+ +H + I N    D  + S+LI MYA C                       
Sbjct: 248 EYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCT---------------------- 285

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
                    +V+D+  +F  + + D I W+++I+G  +N    E LK F +M +  +KP+
Sbjct: 286 ---------RVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPN 336

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
            V+  S++ ACAHL  L   +++H YI ++ F G++ + +A++DMYAKCG++ +AR +F+
Sbjct: 337 HVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFD 396

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
           +M   +++SWT+MI  +A+HG A +A+  F +M+ E + PN V F+ VL ACSHAGLVDE
Sbjct: 397 KMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDE 456

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
             + F SMT +Y I P  EHY  + DL GR   L EA E +  M   P   +W +L+AAC
Sbjct: 457 AWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAAC 516

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
           RVH  IELAE  +K+L  +DP + GA VLLSNIY+   RW+D  +LR +M+++G+ K+ A
Sbjct: 517 RVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPA 576

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
           CS IE+ N+V+ F+  D+SH   D+I E L  ++ +++  GYV D    L D+E+E+KR 
Sbjct: 577 CSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRY 636

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
           ++  HSE+LA+ +G+IS+   + IR+ KNLRVC DCH   K +SK+  REIV+RD +RFH
Sbjct: 637 LLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFH 696

Query: 710 HYKDGVCSCKDYW 722
           H+KDG CSC D+W
Sbjct: 697 HFKDGKCSCGDFW 709


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 266/742 (35%), Positives = 408/742 (54%), Gaps = 46/742 (6%)

Query: 20  SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA 79
           S+ +SL+  +Q HA ILK    + +    L   LL+ ++           A  +   +P 
Sbjct: 24  STTASLSQTRQAHAHILKTGLFNDTH---LATKLLSHYA----NNMCFADATLVLDLVPE 76

Query: 80  PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQV 139
           P     +  I A S  H+  HAL  F +ML  GL  D    P  +KA A    L    QV
Sbjct: 77  PNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQV 136

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
           HG+ +  GF SD FVQ+ LV MY  C +I DA  +FD+M   D+V WS ++  Y + G  
Sbjct: 137 HGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCV 196

Query: 200 DEVLNLFEEMKMSNV-----------------------------------EPDEMVLSKI 224
           DE   LF EM  S V                                   EPD   +S +
Sbjct: 197 DEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSV 256

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L A     +L  G  +H ++I   +  D  + S LI MY  C C      +FD++   ++
Sbjct: 257 LPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDV 316

Query: 285 VVSTAMVSGYSRAGQVEDARLIF----DQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
               A + G SR GQVE +  +F    DQ +E +++ W++MI+  ++N    EAL+LF E
Sbjct: 317 GSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFRE 376

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQ+ G+KP+ VT+  ++ AC ++  L   +  H +  +     D+ V +A+IDMYAKCG 
Sbjct: 377 MQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGR 436

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           ++++R  F+ +  +N++ W ++I  +A+HG A+ A+  F+ M+     P+ ++F  VL A
Sbjct: 437 IQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSA 496

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CS +GL +EG   F SM+++Y I  + EHY CMV L  RA  L +A  ++  MP  P+  
Sbjct: 497 CSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDAC 556

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           +WG+L+++CRVH  + L E AA++L +L+P + G  +LLSNIYA    W +V  +R  MK
Sbjct: 557 VWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMK 616

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
            +G+ K   CS IE+ N+V+  L  D+SH Q  QI EKL+++  E+K  GY P+I+  L 
Sbjct: 617 NKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQ 676

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D+E+++K +++  HSEKLA+ +GL+++     ++++KNLR+C DCH  IK +S    REI
Sbjct: 677 DVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREI 736

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
            +RD  RFHH+K+G CSC DYW
Sbjct: 737 FVRDTNRFHHFKEGACSCGDYW 758


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/635 (39%), Positives = 392/635 (61%)

Query: 88  FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
            I   S  +  K A+ +F +M+  G+  +  +    + A A+ + L  G +V  L T+LG
Sbjct: 194 LINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELG 253

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207
             S+  V   L+ MY  CG +   R +FD+ S +++V ++ ++  Y Q+GL  EVL + +
Sbjct: 254 VKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLD 313

Query: 208 EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           EM      PD++ +   ++AC++ G+LS G++ H ++  N +    ++ + +I MY  CG
Sbjct: 314 EMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCG 373

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
             + A  +FD +  K +V   ++++G  R G++E A  IF +M E +L+ W+ MI    +
Sbjct: 374 KREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQ 433

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
            +  +EA+ L  EMQ  G+K D+VTM+ + SAC +LG LD A+ I+ YI+KN    D+++
Sbjct: 434 ASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQL 493

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
             A++DM+++CG   +A  VFE M +R+V +WT+ I   A+ G+A+ A+  F++M  + +
Sbjct: 494 GTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDV 553

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
             +   F+ +L A SH G VD+GR++F +M   + + P+  HYGCMVDL GRA LL EA 
Sbjct: 554 KADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAF 613

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
           +L+++MP  PN VIWGS +AACR H  +E A +A +++ QL P+  G  VLLSNIYA   
Sbjct: 614 DLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAG 673

Query: 568 RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627
           +W DV  +R  MKE+G  K    S IE++  + EF + D SH +  QI   L E+   + 
Sbjct: 674 KWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRIS 733

Query: 628 PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHN 687
             GYVPD  + LVD++++EK  ++  HSEKLA+ YGLI++ K   IR+VKNLR+C DCH+
Sbjct: 734 QVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDCHS 793

Query: 688 FIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           F KLVSK+Y REI +RD  R+H +K+G CSC+D+W
Sbjct: 794 FAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 172/595 (28%), Positives = 278/595 (46%), Gaps = 91/595 (15%)

Query: 2   STLSQPTKPLTLPTST------AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLT 55
           +TL Q + PL LPT+T      ++ +C +L  +KQ H  +LK    + ++        L 
Sbjct: 6   TTLHQSSSPLLLPTTTQKPKNSSLQTCKTLIELKQLHCNMLKKGVFNINK--------LI 57

Query: 56  SFSLPTTTPSSLYYALSIFSQIPAPPSRV--SNKFIRAISWSHRPKHALKVFLKML-NEG 112
           +  +   T  SL YAL+ F +       +   N  IR  + S   K A+ ++L M+   G
Sbjct: 58  AACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMG 117

Query: 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR 172
           +  D F+FP +L A ++     EG+QVHG+  K+G   D FV   L+  Y ACGK+   R
Sbjct: 118 IVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGR 177

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
            +FD+M  R++V W+ +I+GY    +  E + LF EM    VEP+ + +   +SAC++  
Sbjct: 178 KVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLK 237

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
           +L  G+ V   + +  V  +  + + L+ MY  CG M   + +FD+   KNLV+   ++S
Sbjct: 238 DLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMS 297

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
            Y + G   +  ++ D+M++K                               G +PDKVT
Sbjct: 298 NYVQHGLAGEVLVVLDEMLQK-------------------------------GQRPDKVT 326

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           MLS I+ACA LG L   +  H Y+ +N       ++NAIIDMY KCG  E+A +VF+ M 
Sbjct: 327 MLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMS 386

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFN-------------------------------K 441
            + V++W S+I      G+   AL  F                                +
Sbjct: 387 NKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLRE 446

Query: 442 MKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501
           M+++ I  + VT +G+  AC + G +D  + I+ +   + +I    +    +VD+F R  
Sbjct: 447 MQNQGIKGDRVTMVGIASACGYLGALDLAKWIY-TYIEKNDIHIDMQLGTALVDMFSRCG 505

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRV-------HGEIELAEFAAKQLLQLD 549
               A+ + E M    +V  W    AA RV        G IEL +   KQ ++ D
Sbjct: 506 DPLNAMRVFENME-KRDVSAW---TAAIRVKAVEGNAKGAIELFDEMLKQDVKAD 556



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/488 (24%), Positives = 229/488 (46%), Gaps = 73/488 (14%)

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           + +I GY  +GL  E + ++  M +   + PD      +LSACS+    S G  VH  ++
Sbjct: 90  NTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVV 149

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
                                             L+K+L V+ +++  Y+  G+V+  R 
Sbjct: 150 KMG-------------------------------LVKDLFVANSLIHFYAACGKVDLGRK 178

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +FD+M+E++++ W+++I+GY+  N  +EA+ LF EM   G++P+ VTM+  ISACA L  
Sbjct: 179 VFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKD 238

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L+  +++   + +     +  V NA++DMY KCG + + RE+F+    +N++ + ++++ 
Sbjct: 239 LELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSN 298

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
           +  HG A   L+  ++M  +   P+ VT +  + AC+  G +  G+      ++ Y    
Sbjct: 299 YVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKS-----SHAYVFRN 353

Query: 486 KYEHY----GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA--- 538
             E        ++D++ +      A ++ ++M     VV W SL+A     GE+ELA   
Sbjct: 354 GLERLDNISNAIIDMYMKCGKREAACKVFDSMS-NKTVVTWNSLIAGLVRDGELELALRI 412

Query: 539 --EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER-------- 588
             E     L+  +    GA+V  S        +++  +L + M+ +GI  +R        
Sbjct: 413 FGEMPESNLVSWNT-MIGAMVQAS-------MFEEAIDLLREMQNQGIKGDRVTMVGIAS 464

Query: 589 AC---SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDE 645
           AC     +++   +Y ++  +  H    Q+   L ++ S         D  +A+   E+ 
Sbjct: 465 ACGYLGALDLAKWIYTYIEKNDIHIDM-QLGTALVDMFSR------CGDPLNAMRVFENM 517

Query: 646 EKREVILW 653
           EKR+V  W
Sbjct: 518 EKRDVSAW 525


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/626 (39%), Positives = 392/626 (62%), Gaps = 1/626 (0%)

Query: 97  RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQT 156
           RPK A+ +F +M+  G+     +   ++ A A+   L  G +V     +LG   +  +  
Sbjct: 212 RPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVN 271

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
            LV MY  CG I  A+ +FD+   R++V ++ ++  Y + GL  E L + +EM      P
Sbjct: 272 ALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRP 331

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           D + +   +SA ++  +L YG+  H ++I N +     + + +I MY  CG  +MA  +F
Sbjct: 332 DRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVF 391

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           D +  K +V   ++ +G+ R G VE A  +F+Q+ E++ + W+ MISG  + +  ++A++
Sbjct: 392 DLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIE 451

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           LF EMQ  G+K D+VTM+ + SAC +LG  + A+ +H YI+KN    D+R+N A++DM+A
Sbjct: 452 LFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFA 511

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           +CG  +SA +VF +M  R+V +WT+ I   A+ G+   A   FN+M  + + P+ V F+ 
Sbjct: 512 RCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQ 571

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           VL ACSH G V++G  IF S+  ++ I P+ EHYGCMVDL GRA LLREA +L+++MP  
Sbjct: 572 VLTACSHGGQVEQGLHIF-SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPME 630

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
           PN V+WGSL+AACRVH  +E+A +AA+++ +L P   G  VLLSNIYA   +W DV  +R
Sbjct: 631 PNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVR 690

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
            +++E+G+ K    S +++N  ++EF + D SH +   I   L E+      AG++PD+ 
Sbjct: 691 LNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLS 750

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
           + L+D++++EK  ++  HSEKLA+ +GLI++ +   IR+VKNLR+C DCH+F K+ S +Y
Sbjct: 751 NVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIY 810

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
            REI++RD  RFH ++ G+CSC DYW
Sbjct: 811 NREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 163/590 (27%), Positives = 269/590 (45%), Gaps = 77/590 (13%)

Query: 2   STLSQPTKPLTLPT--STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL 59
           +T  +   P+T  +  + ++  C +L  +KQ H QI K  +      S L KL+     +
Sbjct: 13  ATQIKEADPMTKDSCLNESLRCCKTLNQLKQLHCQITK--NGLDQIPSTLTKLVNAGAEI 70

Query: 60  PTTTPSSLYYALSIFSQIPAPPSR-----VSNKFIRAISWSHRPKHALKVFLKMLNEGLT 114
              +P SL YA   F              + N  IR  S +   + A+ ++++ML  G+T
Sbjct: 71  --ASPESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVT 128

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
            + ++FP +L    +     EG+QVHG   K+G   D F+Q  L+  Y  CG +     +
Sbjct: 129 PNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKV 188

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           F+ MS R++V W+ +I GY +     E ++LF EM  + + P  + +  ++SAC++  +L
Sbjct: 189 FEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDL 248

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             GE V  +I +  + L+  + + L+ MY  CG +D AK LFD+ + +NLV+   ++S Y
Sbjct: 249 DMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNY 308

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
           +R G   +A  I D+M+++                               G +PD+VTML
Sbjct: 309 ARQGLAREALAILDEMLQQ-------------------------------GPRPDRVTML 337

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           S ISA A L  L   +  H Y+ +N   G   + N IIDMY KCG  E A  VF+ M  +
Sbjct: 338 SAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNK 397

Query: 415 NVISWTSMINAFAIHGDA------------RNALIF-------------------FNKMK 443
            V+SW S+   F  +GD             RNA+ +                   F +M+
Sbjct: 398 TVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQ 457

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
            E I  + VT +G+  AC + G  +  + +  +   +  IP        +VD+F R    
Sbjct: 458 GEGIKADRVTMMGIASACGYLGAPELAKWVH-TYIEKNGIPCDMRLNTALVDMFARCGDP 516

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL--QLDPD 551
           + A+++   M    +V  W + +    + G  E A     Q+L   + PD
Sbjct: 517 QSAMQVFNKMT-ERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPD 565



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 215/465 (46%), Gaps = 56/465 (12%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLV--GMYGACGKILD-ARLMF-----DKMSYRDIVPWSVM 189
           Q+H   TK G    P   T LV  G   A  + LD AR  F     D  S   +   + +
Sbjct: 43  QLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNSL 102

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY   GL  E + L+  M +  V P+      +LS C++      G  VH  ++   +
Sbjct: 103 IRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGL 162

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             D  +Q+ LI  YA CG MD                                   +F+ 
Sbjct: 163 EEDVFIQNCLIHFYAECGHMD-------------------------------HGHKVFEG 191

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M E++++ W+++I GYA  + P+EA+ LF EM   G++P  VTM+ VISACA L  LD  
Sbjct: 192 MSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMG 251

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           +R+  YI +     +  + NA++DMY KCG++++A+ +F+    RN++ + ++++ +A  
Sbjct: 252 ERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQ 311

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G AR AL   ++M  +   P+ VT +  + A   A LVD     +  + + Y I    E 
Sbjct: 312 GLAREALAILDEMLQQGPRPDRVTMLSAISA--SAQLVD---LFYGKVCHGYVIRNGLEG 366

Query: 490 Y----GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
           +      ++D++ +      A  + + M     VV W SL A    +G++E    +A ++
Sbjct: 367 WDSIGNVIIDMYMKCGKPEMACRVFDLMS-NKTVVSWNSLTAGFIRNGDVE----SAWEV 421

Query: 546 LQLDPDHDGAL--VLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
               P+ +      ++S +  K   ++D  EL + M+  GI  +R
Sbjct: 422 FNQIPERNAVFWNTMISGLVQK-SLFEDAIELFREMQGEGIKADR 465



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 8/185 (4%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F+QIP   +   N  I  +      + A+++F +M  EG+  DR +    +  IA 
Sbjct: 418 AWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVT----MMGIAS 473

Query: 130 AEGLLEGMQ----VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A G L   +    VH    K G   D  + T LV M+  CG    A  +F+KM+ RD+  
Sbjct: 474 ACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSA 533

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+  I      G  +    LF +M +  V+PD ++  ++L+ACS  G +  G  +   + 
Sbjct: 534 WTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLME 593

Query: 246 DNNVA 250
           D+ ++
Sbjct: 594 DHGIS 598


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 272/698 (38%), Positives = 392/698 (56%), Gaps = 38/698 (5%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV 84
           L   KQ H  I+K   S   QN+ ++  LL  +         L  A  +F  +       
Sbjct: 44  LMAAKQVHDCIIK---SRMEQNAHVMNNLLHVY----IECGRLQEARCVFDALVKKSGAS 96

Query: 85  SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
            N  I         + A+++F +M +EG+  +  ++  ILKA A    L  G +VH    
Sbjct: 97  WNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIR 156

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
             G  SD  V T L+ MYG CG I +AR +FD +   DI+ W+VMI  Y Q+G   E   
Sbjct: 157 HGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYR 216

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           L  +M+    +P+ +    IL+AC+  G L + + VH   +D  + LD            
Sbjct: 217 LMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVR---------- 266

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
                                V TA+V  Y+++G ++DAR++FD+M  +D++ W+ MI  
Sbjct: 267 ---------------------VGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGA 305

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           +AE+    EA  LF +MQ  G KPD +  LS+++ACA  G L+  ++IH +   +    D
Sbjct: 306 FAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVD 365

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
           +RV  A++ MY+K GS++ AR VF+RM+ RNV+SW +MI+  A HG  ++AL  F +M  
Sbjct: 366 VRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTA 425

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
             + P+ VTF+ VL ACSHAGLVDEGR  + +MT  Y I P   H  CMVDL GRA  L 
Sbjct: 426 HGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLM 485

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
           EA   ++ M   P+   WG+L+ +CR +G +EL E  AK+ L+LDP +    VLLSNIYA
Sbjct: 486 EAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYA 545

Query: 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVIS 624
           +  +W  V  +R  M+ERGI KE   S IE++N++++FL AD SH +  +I E  ++VI 
Sbjct: 546 EAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIE 605

Query: 625 ELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCED 684
           ++K  GY+PD    L +   ++K   I  HSEKLA+ YGL+ +   + IR+ KNLRVC D
Sbjct: 606 KIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTPPGNPIRVFKNLRVCTD 665

Query: 685 CHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           CH   KL+SKV  REI++RD  RFHH+KDGVCSC DYW
Sbjct: 666 CHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 135/322 (41%), Gaps = 47/322 (14%)

Query: 9   KPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLL-TSFSLPTTTPSSL 67
           KP  +   + +++C+S   +K      +K  H H     L L + + T+         S+
Sbjct: 227 KPNAITYVSILNACASEGALKW-----VKRVHRHALDAGLELDVRVGTALVQMYAKSGSI 281

Query: 68  YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
             A  +F ++        N  I A +   R   A  +FL+M  EG   D   F  IL A 
Sbjct: 282 DDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNAC 341

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
           A A  L    ++H      G   D  V T LV MY   G I DAR++FD+M  R++V W+
Sbjct: 342 ASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWN 401

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA-----VHE 242
            MI G  Q+GL  + L +F  M    V+PD +    +LSACS AG +  G +        
Sbjct: 402 AMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQV 461

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           + I+ +V              ++C C                     MV    RAG++ +
Sbjct: 462 YGIEPDV--------------SHCNC---------------------MVDLLGRAGRLME 486

Query: 303 ARLIFDQM-VEKDLICWSAMIS 323
           A+L  D M V+ D   W A++ 
Sbjct: 487 AKLFIDNMAVDPDEATWGALLG 508



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 135/328 (41%), Gaps = 59/328 (17%)

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
           N   +  + L N +Q  G+  D    + V+  C     L  A+++H  I K+    +  V
Sbjct: 7   NTLSEAIVVLMNRLQR-GLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHV 65

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
            N ++ +Y +CG L+ AR VF+ + +++  SW +MI  +  H  A +A+  F +M  E +
Sbjct: 66  MNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGV 125

Query: 448 DPNGVTFIGVLYACS----------------HAGL-------------------VDEGRE 472
            PN  T++ +L AC+                H GL                   ++E R 
Sbjct: 126 QPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARR 185

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL---VETMPFAPNVVIWGSLMAAC 529
           IF ++ N   I      +  M+  + ++   +EA  L   +E   F PN + + S++ AC
Sbjct: 186 IFDNLMNHDIIS-----WTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNAC 240

Query: 530 RVHGEIELAEFAAKQL----LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585
              G ++  +   +      L+LD     ALV    +YAK     D   +   MK R + 
Sbjct: 241 ASEGALKWVKRVHRHALDAGLELDVRVGTALV---QMYAKSGSIDDARVVFDRMKVRDV- 296

Query: 586 KERACSRIEMNNEVYEFLTADRSHKQTD 613
                  +  N  +  F    R H+  D
Sbjct: 297 -------VSWNVMIGAFAEHGRGHEAYD 317


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/717 (37%), Positives = 398/717 (55%), Gaps = 38/717 (5%)

Query: 6    QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
            +P +   L   +A ++ S+    K  H  IL+   S    N  L   L+  +        
Sbjct: 428  KPGRVTFLHLLSACANSSAYADGKMIHEDILR---SGIKSNGHLANALMNMYR----RCG 480

Query: 66   SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
            SL  A ++F    A      N  I   +     + A K+F +M NE L  D  +F  +L 
Sbjct: 481  SLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLS 540

Query: 126  AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
                 E L  G Q+HG  T+ G   D  +   L+ MY  CG + DAR +F  + +RD++ 
Sbjct: 541  GCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS 600

Query: 186  WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
            W+ MI G    G   + + LF +M+     P +   S IL  C+ +  L  G+ V  +I+
Sbjct: 601  WTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYIL 660

Query: 246  DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
            ++   LD                                 V  A++S YS++G + DAR 
Sbjct: 661  NSGYELDTG-------------------------------VGNALISAYSKSGSMTDARE 689

Query: 306  IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
            +FD+M  +D++ W+ +I+GYA+N   Q A++   +MQ   + P+K + +S+++AC+    
Sbjct: 690  VFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSA 749

Query: 366  LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
            L++ +R+H  I K    GD+RV  A+I MYAKCGS   A+EVF+ +  +NV++W +MINA
Sbjct: 750  LEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINA 809

Query: 426  FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
            +A HG A  AL FFN M+ E I P+G TF  +L AC+HAGLV EG +IF+SM +EY + P
Sbjct: 810  YAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLP 869

Query: 486  KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
              EHYGC+V L GRA   +EA  L+  MPF P+  +W +L+ ACR+HG I LAE AA   
Sbjct: 870  TIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNA 929

Query: 546  LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
            L+L+  +    +LLSN+YA   RW DV ++R+ M+ RGI KE   S IE++N ++EF+ A
Sbjct: 930  LKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAA 989

Query: 606  DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
            DRSH +T +IY +L  +  E++ AGY PD    L DL    +   +  HSE+LA+ YGLI
Sbjct: 990  DRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLI 1049

Query: 666  SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             +   + IRI KNLR+C DCH   K +SK+  REI+ RD  RFH +K+G CSC+DYW
Sbjct: 1050 KTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  222 bits (565), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 153/531 (28%), Positives = 256/531 (48%), Gaps = 46/531 (8%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHS--QNSLLLKLLLTSFSLPTTTP 64
           P K   +   TA  S + L + K+ H+QI+K  +      QNSLL  +      LP    
Sbjct: 126 PNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLL-SMYGKCGDLPR--- 181

Query: 65  SSLYYALSIFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
                A  +F+ I +P   VS N  +   +     K  L +F +M +EG++ D+ ++  +
Sbjct: 182 -----ARQVFAGI-SPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINL 235

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L A      L EG ++H L  + G  SD  V T LV M   CG +  A+  F   + RD+
Sbjct: 236 LDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDV 295

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           V ++ +I    Q+G   E    +  M+   V  +      IL+ACS +  L  G+ +H  
Sbjct: 296 VVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSH 355

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           I ++  + D  + + LI+MYA                               R G +  A
Sbjct: 356 ISEDGHSSDVQIGNALISMYA-------------------------------RCGDLPKA 384

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
           R +F  M ++DLI W+A+I+GYA      EA++L+ +MQ  G+KP +VT L ++SACA+ 
Sbjct: 385 RELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS 444

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
                 + IH  I ++    +  + NA+++MY +CGSL  A+ VFE  + R+VISW SMI
Sbjct: 445 SAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMI 504

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
              A HG    A   F +M++E ++P+ +TF  VL  C +   ++ G++I   +T E  +
Sbjct: 505 AGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRIT-ESGL 563

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
                    +++++ R   L++A  +  ++    +V+ W +++  C   GE
Sbjct: 564 QLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCADQGE 613



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 148/560 (26%), Positives = 265/560 (47%), Gaps = 49/560 (8%)

Query: 1   MSTLSQPTKPLTLPTSTAIS---SCSS---LTHMKQTHAQILKLSHSHHSQNSLLLKLLL 54
           +S   QP +P     +T ++   +C+    L   K+ HAQ+++   +    +  L  LL+
Sbjct: 14  VSNTHQP-RPTETERATYVALLQNCTRKRLLPEAKRIHAQMVE---AWVGPDIFLSNLLI 69

Query: 55  TSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT 114
             +        S+  A  +F ++P       N  I   +     K A ++F +M N G  
Sbjct: 70  NMY----VKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI 125

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
            ++ ++  IL A      L  G ++H    K G+  DP VQ  L+ MYG CG +  AR +
Sbjct: 126 PNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQV 185

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           F  +S RD+V ++ M+  Y Q     E L LF +M    + PD++    +L A +    L
Sbjct: 186 FAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSML 245

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             G+ +H+  ++  +  D  + + L+TM   CG +D AK  F                  
Sbjct: 246 DEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGT--------------- 290

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
                            ++D++ ++A+I+  A++ H  EA + +  M+  G+  ++ T L
Sbjct: 291 ----------------ADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYL 334

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           S+++AC+    L+  + IH +I ++    D+++ NA+I MYA+CG L  ARE+F  M +R
Sbjct: 335 SILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKR 394

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           ++ISW ++I  +A   D   A+  + +M+ E + P  VTF+ +L AC+++    +G+ I 
Sbjct: 395 DLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIH 454

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
             +     I         +++++ R   L EA  + E    A +V+ W S++A    HG 
Sbjct: 455 EDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ-ARDVISWNSMIAGHAQHGS 512

Query: 535 IELAE--FAAKQLLQLDPDH 552
            E A   F   Q  +L+PD+
Sbjct: 513 YETAYKLFQEMQNEELEPDN 532



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 240/467 (51%), Gaps = 35/467 (7%)

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
           V N  I A++       A + + +M ++G+ ++R ++  IL A + ++ L  G  +H   
Sbjct: 297 VYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHI 356

Query: 144 TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
           ++ G  SD  +   L+ MY  CG +  AR +F  M  RD++ W+ +I GY +     E +
Sbjct: 357 SEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAM 416

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            L+++M+   V+P  +    +LSAC+ +   + G+ +HE I+ + +  + HL + L+ MY
Sbjct: 417 RLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMY 476

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
             CG +  A+ +F+    ++++   +M++G+++ G  E A  +F +M  ++L        
Sbjct: 477 RRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEEL-------- 528

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
                                  +PD +T  SV+S C +   L+  ++IH  I ++    
Sbjct: 529 -----------------------EPDNITFASVLSGCKNPEALELGKQIHGRITESGLQL 565

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
           D+ + NA+I+MY +CGSL+ AR VF  ++ R+V+SWT+MI   A  G+   A+  F +M+
Sbjct: 566 DVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQ 625

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE-YNIPPKYEHYGCMVDLFGRANL 502
           +E   P   TF  +L  C+ +  +DEG+++ A + N  Y +     +   ++  + ++  
Sbjct: 626 NEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN--ALISAYSKSGS 683

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           + +A E+ + MP + ++V W  ++A    +G  + A   A Q+ + D
Sbjct: 684 MTDAREVFDKMP-SRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQD 729


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 273/747 (36%), Positives = 414/747 (55%), Gaps = 41/747 (5%)

Query: 10  PLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYY 69
           P   PT  ++   + L  +     ++L     H    S LL  L+  F+   T P  L Y
Sbjct: 3   PAPWPTPRSVRQAAELHAVLVASGRLL-----HPPSASHLLNSLVNCFT--PTDPLHLRY 55

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           AL +F ++P                S  P+  L ++ +M   G+  D F+F  + K  AR
Sbjct: 56  ALCLFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCAR 115

Query: 130 AEG-LLEGMQVHGLGTKLGFGSD-PFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
               +L    +H    +    S  P V   ++ MY   G   DAR  FD +  +D V W+
Sbjct: 116 GRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWT 175

Query: 188 VMIDGYFQNGLFD-------------------------------EVLNLFEEMKMSNVEP 216
            +I G  + GL D                               E ++ F  M    +EP
Sbjct: 176 TVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEP 235

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           DE+ +  +LSAC++  +L +G ++H+ + +  + +   L   LI MYA CG +  A  +F
Sbjct: 236 DEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVF 295

Query: 277 DKVLLKNLVVS-TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           D +       S  AM+ GY + G V+ AR +FDQM ++DL+ ++++I+GY      +EAL
Sbjct: 296 DALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREAL 355

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
            LF +M+   ++ D  TM+S+++ACA LG L Q + +H  I++     D+ +  A++DMY
Sbjct: 356 LLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMY 415

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
            KCG +E A  VF+ M  R+V +W++MI   A +G  + AL +F  MK +   PN VT+I
Sbjct: 416 LKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYI 475

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
            +L ACSH+ L+DEGR  F  M   +NI P  EHYGCM+DL GR+ LL EA++LV TMP 
Sbjct: 476 AILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPM 535

Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575
            PN VIW S+++ACRVH +  LA  AA+ LL+L+PD D   V L NIY   ++W+D  ++
Sbjct: 536 QPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQI 595

Query: 576 RKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
           R+ M+ERG+ K    S I +  +V++F+  DR+H Q  +I   + E+   LK  GY P  
Sbjct: 596 RRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLKSVGYSPIT 655

Query: 636 HSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKV 695
               VD+++EEK   +L HSEK+A+ +GLIS   +  + I+KNLRVCEDCH+ IKL+S++
Sbjct: 656 SQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCEDCHSAIKLISRI 715

Query: 696 YAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + REI++RDR+RFHH++DG CSC D+W
Sbjct: 716 WNREIIVRDRSRFHHFRDGTCSCNDFW 742


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 253/661 (38%), Positives = 383/661 (57%), Gaps = 32/661 (4%)

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
           T   S+  AL +F+ +           I   +   R + A   F KM+  G+  +R +F 
Sbjct: 352 TKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFM 411

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
            IL A +R   L +G Q+H    K G+ +D  V+T L+ MY  CG ++DAR +F+++S +
Sbjct: 412 SILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQ 471

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           ++V W+ MI  Y Q+  +D  +  F+ +    ++PD    + IL+ C     L  G+ V 
Sbjct: 472 NVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQ 531

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
             II      D H+++ L++M+ NCG +  A  L                          
Sbjct: 532 SLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNL-------------------------- 565

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
                F+ M E+DL+ W+ +I+G+ ++   Q A   F  MQ  G+KPD++T   +++ACA
Sbjct: 566 -----FNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACA 620

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
               L + +R+H  I + A   D+ V   +I MY KCGS++ A  VF  + ++NV SWTS
Sbjct: 621 SPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTS 680

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI  +A HG  + AL  F +M+ E + P+ +TF+G L AC+HAGL+ EG   F SM  ++
Sbjct: 681 MITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESM-KDF 739

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
           NI P+ EHYGCMVDLFGRA LL EA+E +  M   P+  +WG+L+ AC+VH ++ELAE  
Sbjct: 740 NIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKV 799

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
           A++ L+LDP+ DG  V+LSNIYA    W++V ++RK M +RG++K+   S IE++  V+ 
Sbjct: 800 AQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHI 859

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           F + D++H Q ++I+ +L  +  E+K  GYVPD    L D+ED EK   +  HSE+LA+ 
Sbjct: 860 FCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIA 919

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           YGL+ +   + I I KNLRVC DCH   KL+SK+  R+I+ RD  RFHH+KDGVCSC D+
Sbjct: 920 YGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDF 979

Query: 722 W 722
           W
Sbjct: 980 W 980



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 143/498 (28%), Positives = 251/498 (50%), Gaps = 35/498 (7%)

Query: 56  SFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI 115
           +F L TT+ S  Y        +    ++ +N F+  +S + +   A+ V L + +  + I
Sbjct: 43  TFRLYTTSFSGSYSKGQGNEFVDIKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQI 102

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
            R ++  +L+   + + L +G ++H          D F+   L+ MY  CG    A+ +F
Sbjct: 103 HRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIF 162

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           D+M  +D+  W++++ GY Q+  ++E   L E+M    V+PD+     +L+AC+ A N+ 
Sbjct: 163 DEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVD 222

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G  +   I+  N   D                              +L V TA+++ + 
Sbjct: 223 KGGELFSLIL--NAGWDT-----------------------------DLFVGTALINMHI 251

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           + G V+DA  +F+ +  +DLI W++MI+G A +   ++A  LF  M+  G++PDKV  +S
Sbjct: 252 KCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVS 311

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           ++ AC H   L+Q +R+H  + +     ++ V  A++ MY KCGS+E A EVF  ++ RN
Sbjct: 312 LLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRN 371

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V+SWT+MI  FA HG    A +FFNKM +  I+PN VTF+ +L ACS    + +GR+I  
Sbjct: 372 VVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHD 431

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
            +     I         ++ ++ +   L +A  + E +    NVV W +++ A   H + 
Sbjct: 432 RIIKAGYITDDRVRTA-LLSMYAKCGSLMDARNVFERIS-KQNVVAWNAMITAYVQHEKY 489

Query: 536 ELAEFAAKQLLQ--LDPD 551
           + A    + LL+  + PD
Sbjct: 490 DNAVATFQALLKEGIKPD 507



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 142/485 (29%), Positives = 243/485 (50%), Gaps = 35/485 (7%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  IF ++P       N  +       R + A ++  +M+ +G+  D+++F  +L A A 
Sbjct: 158 AKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACAD 217

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           A+ + +G ++  L    G+ +D FV T L+ M+  CG + DA  +F+ +  RD++ W+ M
Sbjct: 218 AKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSM 277

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G  ++  F +  NLF+ M+   V+PD++    +L AC+    L  G+ VH  +    V
Sbjct: 278 ITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM--KEV 335

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            LD                               + V TA++S Y++ G +EDA  +F+ 
Sbjct: 336 GLDT-----------------------------EIYVGTALLSMYTKCGSMEDALEVFNL 366

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           +  ++++ W+AMI+G+A++   +EA   FN+M   G++P++VT +S++ AC+    L Q 
Sbjct: 367 VKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQG 426

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           ++IH  I K  +  D RV  A++ MYAKCGSL  AR VFER+ ++NV++W +MI A+  H
Sbjct: 427 RQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQH 486

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
               NA+  F  +  E I P+  TF  +L  C     ++ G+ +  S+            
Sbjct: 487 EKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWV-QSLIIRAGFESDLHI 545

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA--EFAAKQLLQ 547
              +V +F     L  A+ L   MP   ++V W +++A    HGE + A   F   Q   
Sbjct: 546 RNALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESG 604

Query: 548 LDPDH 552
           + PD 
Sbjct: 605 VKPDQ 609



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 212/448 (47%), Gaps = 45/448 (10%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +P +   +    A S  S+L   +Q H +I+K   + +  +  +   LL+ ++       
Sbjct: 404 EPNRVTFMSILGACSRPSALKQGRQIHDRIIK---AGYITDDRVRTALLSMYA----KCG 456

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           SL  A ++F +I        N  I A     +  +A+  F  +L EG+  D  +F  IL 
Sbjct: 457 SLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILN 516

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
                + L  G  V  L  + GF SD  ++  LV M+  CG ++ A  +F+ M  RD+V 
Sbjct: 517 VCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVS 576

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ +I G+ Q+G      + F+ M+ S V+PD++  + +L+AC+    L+ G  +H  I 
Sbjct: 577 WNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALIT 636

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
           +  +  D  + + LI+MY  CG +D A  +F  +  KN+   T+M++GY++ G+      
Sbjct: 637 EAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGR------ 690

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
                                     +EAL+LF +MQ  G+KPD +T +  +SACAH G+
Sbjct: 691 -------------------------GKEALELFCQMQQEGVKPDWITFVGALSACAHAGL 725

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSM 422
           + +   +H +     F  + R+ +   ++D++ + G L  A E   +M+ + +   W ++
Sbjct: 726 IKEG--LHHFESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGAL 783

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPN 450
           + A  +H D   A     K  +  +DPN
Sbjct: 784 LGACQVHLDVELAEKVAQKKLE--LDPN 809


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 245/658 (37%), Positives = 384/658 (58%), Gaps = 5/658 (0%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  IF ++           I+A +   +   A +++ KML  G++ +  +F  +L +   
Sbjct: 233 ACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNT 292

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            E L  G ++H   ++ G  +D  V   L+ MY  C  I DAR  FD+MS RD++ WS M
Sbjct: 293 PEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAM 352

Query: 190 IDGYFQNGL-----FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
           I GY Q+G       DEV  L E M+   V P+++    IL ACS  G L  G  +H  I
Sbjct: 353 IAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEI 412

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
                  D  LQ+ +  MYA CG +  A+ +F K+  KN+V   ++++ Y + G +  A 
Sbjct: 413 SKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAE 472

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            +F +M  ++++ W+ MI+GYA++    +  +L + M+V G +PD+VT++S++ AC  L 
Sbjct: 473 KVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALS 532

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L++ + +H    K     D  V  ++I MY+KCG +  AR VF+++  R+ ++W +M+ 
Sbjct: 533 ALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLA 592

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
            +  HG    A+  F +M  E + PN +TF  V+ AC  AGLV EGREIF  M  ++ + 
Sbjct: 593 GYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMK 652

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P  +HYGCMVDL GRA  L+EA E ++ MP  P++ +W +L+ AC+ H  ++LAE+AA  
Sbjct: 653 PGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHH 712

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           +L+L+P +    V LSNIYA+  RW D  ++RK M ++G+ K+R  S IE++  ++ F+ 
Sbjct: 713 ILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVA 772

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            D +H + D I+ +L  +  E+K AGY PD+   L D+++ +K   +  HSEKLA+ YGL
Sbjct: 773 EDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGL 832

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + +   + IRI+KNLRVC DCH   K +SK+  REIV RD  RFH++K+G CSC D+W
Sbjct: 833 LKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  216 bits (549), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 140/515 (27%), Positives = 243/515 (47%), Gaps = 41/515 (7%)

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
           A P  VS   +  +  + R K A+++   +   GL ++  ++  I++  A+     +G  
Sbjct: 40  AGPRSVSGGEVWRLCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKM 99

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           VH    +LG   D ++   L+  Y   G +     +F +M+ RD+V WS MI  Y  N  
Sbjct: 100 VHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNH 159

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
             +  + FE MK +N+EP+ +    IL AC+    L     +H  +  + +  D  + + 
Sbjct: 160 PAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATA 219

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           LITMY+ CG + +A  +F K+  +N+V                                W
Sbjct: 220 LITMYSKCGEISLACEIFQKMKERNVV-------------------------------SW 248

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +A+I   A++    EA +L+ +M   G+ P+ VT +S++++C     L++ +RIH +I +
Sbjct: 249 TAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISE 308

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG-----DAR 433
                D+ V NA+I MY KC  ++ ARE F+RM +R+VISW++MI  +A  G        
Sbjct: 309 RGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLD 368

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
                  +M+ E + PN VTF+ +L ACS  G +++GR+I A ++ +            +
Sbjct: 369 EVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEIS-KVGFESDRSLQTAI 427

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553
            +++ +   + EA ++   M    NVV W SL+      G++  AE   K   ++   + 
Sbjct: 428 FNMYAKCGSIYEAEQVFSKME-NKNVVAWASLLTMYIKCGDLTSAE---KVFSEMSTRNV 483

Query: 554 GALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
            +  L+   YA+      V EL  SMK  G   +R
Sbjct: 484 VSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDR 518



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/496 (23%), Positives = 218/496 (43%), Gaps = 93/496 (18%)

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           G   E + L   +K   +  +      I+  C++      G+ VH+ + +  +A+D +L 
Sbjct: 57  GRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLG 116

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           ++LI  Y                               S+ G V     +F +M  +D++
Sbjct: 117 NSLINFY-------------------------------SKFGDVASVEQVFRRMTLRDVV 145

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            WS+MI+ YA NNHP +A   F  M+   ++P+++T LS++ AC +  +L++A+ IH  +
Sbjct: 146 TWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVV 205

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
             +    D+ V  A+I MY+KCG +  A E+F++M+ RNV+SWT++I A A H     A 
Sbjct: 206 KASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAF 265

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             + KM    I PN VTF+ +L +C+    ++ GR I + ++ E  +         ++ +
Sbjct: 266 ELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHIS-ERGLETDVVVANALITM 324

Query: 497 FGRANLLREALELVETMP---------------------------------------FAP 517
           + + N +++A E  + M                                          P
Sbjct: 325 YCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFP 384

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL-VLLSNIYAKDKRWQDVGELR 576
           N V + S++ AC VHG +E       ++ ++  + D +L   + N+YAK     +  ++ 
Sbjct: 385 NKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVF 444

Query: 577 KSMKERGIL-----------------KERACSRIEMNNEV-YEFLTADRSHKQTDQIYEK 618
             M+ + ++                  E+  S +   N V +  + A   + Q+  I  K
Sbjct: 445 SKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIA--GYAQSGDI-AK 501

Query: 619 LNEVISELKPAGYVPD 634
           + E++S +K  G+ PD
Sbjct: 502 VFELLSSMKVEGFQPD 517


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/622 (40%), Positives = 393/622 (63%), Gaps = 33/622 (5%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A++ F  M  +G+  ++++FP IL A +       G QVHG   K GFGS+ +VQ+ LV 
Sbjct: 249 AVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVD 308

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG + +A+ M + M   D+V W+ ++ G+ ++GL +E L LF+ M   N++ D+  
Sbjct: 309 MYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYT 368

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
              +L+ C   G+++  ++VH  II                           K  F+   
Sbjct: 369 FPSVLNCCV-VGSIN-PKSVHGLII---------------------------KTGFENYK 399

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
           L    VS A+V  Y++ G ++ A  +F++M+EKD+I W+++++GYA+NN  +E+LK+F +
Sbjct: 400 L----VSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCD 455

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M+V G+ PD+  + S++SACA L +L+  +++HL   K+       V N+++ MYAKCG 
Sbjct: 456 MRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGC 515

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           L+ A  +F  M+ ++VI+WT++I  +A +G  RN+L F++ M      P+ +TFIG+L+A
Sbjct: 516 LDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFA 575

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSHAGLVDEGR+ F  M   Y I P  EHY CM+DLFGR+  L EA +L++ M   P+  
Sbjct: 576 CSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDAT 635

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           +W SL++ACRVH  +ELAE AA  L +L+P +    V+LSN+Y+  ++W DV ++RK MK
Sbjct: 636 VWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMK 695

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
            +GI+KE  CS +E+N+ V  F++ DR H +  +IY K++E+I  +K AGYVPD+  +L 
Sbjct: 696 SKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLH 755

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D++ E K   + +HSEKLA+ +GL+++   + IRI KNLRVC DCH+ +K +S+V+ R I
Sbjct: 756 DMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHI 815

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           ++RD   FHH+++G CSC DYW
Sbjct: 816 ILRDSNCFHHFREGECSCGDYW 837



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 205/436 (47%), Gaps = 37/436 (8%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A  +F  M  EG    +F+   +L+  +    +  G  +HG   K GF  + FV TGLV 
Sbjct: 146 AFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVD 205

Query: 161 MYGACGKILDARLMFDKMSY--RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           MY  C  + +A  +F  + +  ++ V W+ M+ GY QNG   + +  F  M    VE ++
Sbjct: 206 MYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQ 265

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
                IL+ACS      +GE VH FI+ +    + ++QS L+ MYA CG +  AK + + 
Sbjct: 266 YTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLET 325

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +   ++V   +++ G+ R G  E                               EAL+LF
Sbjct: 326 MEDDDVVSWNSLMVGFVRHGLEE-------------------------------EALRLF 354

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
             M    MK D  T  SV++ C  +G ++  + +H  I K  F     V+NA++DMYAK 
Sbjct: 355 KNMHGRNMKIDDYTFPSVLNCCV-VGSIN-PKSVHGLIIKTGFENYKLVSNALVDMYAKT 412

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G ++ A  VFE+M  ++VISWTS++  +A +     +L  F  M+   ++P+      +L
Sbjct: 413 GDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASIL 472

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            AC+   L++ G+++         +      Y  +V ++ +   L +A  +  +M    +
Sbjct: 473 SACAELTLLEFGKQVHLDFIKS-GLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQ-VKD 530

Query: 519 VVIWGSLMAACRVHGE 534
           V+ W +++     +G+
Sbjct: 531 VITWTAIIVGYAQNGK 546



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 173/334 (51%), Gaps = 37/334 (11%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + AL++F  M    + ID ++FP +L       G +    VHGL  K GF +   V   L
Sbjct: 348 EEALRLFKNMHGRNMKIDDYTFPSVLNCCVV--GSINPKSVHGLIIKTGFENYKLVSNAL 405

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           V MY   G +  A  +F+KM  +D++ W+ ++ GY QN   +E L +F +M+++ V PD+
Sbjct: 406 VDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQ 465

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
            +++ ILSAC+    L +G+ VH   I + +     + ++L+ MYA CGC+D A  +F  
Sbjct: 466 FIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVS 525

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           + +K+++  TA++ GY                               A+N   + +LK +
Sbjct: 526 MQVKDVITWTAIIVGY-------------------------------AQNGKGRNSLKFY 554

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYA 396
           + M   G +PD +T + ++ AC+H G++D+ ++    ++K  +G      +   +ID++ 
Sbjct: 555 DAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNK-VYGIKPGPEHYACMIDLFG 613

Query: 397 KCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           + G L+ A+++ ++M  + +   W S+++A  +H
Sbjct: 614 RSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVH 647



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 191/429 (44%), Gaps = 84/429 (19%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNG-------LFD------------------ 200
           G++ DAR +FDKM  +D   W+ MI  Y   G       LFD                  
Sbjct: 79  GQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYC 138

Query: 201 ------EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
                 E  +LF  M++   +  +  L  +L  CS  G +  GE +H F++ N    +  
Sbjct: 139 KFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVF 198

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           + + L+ MYA C C+  A+ LF                            L FD+   K+
Sbjct: 199 VVTGLVDMYAKCKCVSEAEFLFKG--------------------------LEFDR---KN 229

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
            + W+AM++GYA+N    +A++ F  M   G++ ++ T  ++++AC+ +      +++H 
Sbjct: 230 HVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHG 289

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           +I K+ FG ++ V +A++DMYAKCG L++A+ + E M   +V+SW S++  F  HG    
Sbjct: 290 FIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEE 349

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYAC---------SHAGLVDEGREIFASMTNEYNIPP 485
           AL  F  M   ++  +  TF  VL  C          H  ++  G E +  ++N      
Sbjct: 350 ALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNA----- 404

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG--EIELAEFAAK 543
                  +VD++ +   +  A  + E M    +V+ W SL+     +   E  L  F   
Sbjct: 405 -------LVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLVTGYAQNNSHEESLKIFCDM 456

Query: 544 QLLQLDPDH 552
           ++  ++PD 
Sbjct: 457 RVTGVNPDQ 465



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 134/280 (47%), Gaps = 35/280 (12%)

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS----------------------- 323
           +  +++  S++GQV DAR +FD+M +KD   W+ MIS                       
Sbjct: 68  TNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSS 127

Query: 324 --------GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
                   GY +     EA  LF  M++ G K  + T+ SV+  C+ LG++   + IH +
Sbjct: 128 ITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGF 187

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR--RRNVISWTSMINAFAIHGDAR 433
           + KN F G++ V   ++DMYAKC  +  A  +F+ +   R+N + WT+M+  +A +GD  
Sbjct: 188 VVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGY 247

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
            A+ FF  M  + ++ N  TF  +L ACS       G ++   +         Y     +
Sbjct: 248 KAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQ-SAL 306

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           VD++ +   L+ A  ++ETM    +VV W SLM     HG
Sbjct: 307 VDMYAKCGDLKNAKNMLETME-DDDVVSWNSLMVGFVRHG 345


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/658 (37%), Positives = 402/658 (61%), Gaps = 35/658 (5%)

Query: 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           +A+ +F KM++E +   +F+   +L + A  + L  G ++H    KLG GS   V T L+
Sbjct: 125 NAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLL 184

Query: 160 GMYGACGKILDARLMFDKMSY-------------------------------RDIVPWSV 188
            MY  CG  + A+++FD+M+                                RDIV W+ 
Sbjct: 185 NMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNS 244

Query: 189 MIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
           MI GY Q G   E L +F +M    +++PD   L+ ILSAC+    L+ G+ +H +I+  
Sbjct: 245 MISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRA 304

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL--VVSTAMVSGYSRAGQVEDARL 305
                  + + LI+MYA  G +++A+ + +     NL  +  T+++ GY++ G V+ AR 
Sbjct: 305 ETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPARE 364

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           IF+++ ++D++ W+AMI GY +N    +AL+LF  M   G +P+  T+ +++S  + L +
Sbjct: 365 IFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTI 424

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMIN 424
           L+  ++IH    K        V NA+I MYAK G++  A+ VF+    ++ ++SWTSMI 
Sbjct: 425 LEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIM 484

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
           A A HG  + A+  F +M    + P+ +T++GVL AC+H GLV++GR+ +  MT  + I 
Sbjct: 485 ALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIE 544

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P   HY CM+DL+GRA LL+EA   +E+MP  P+ + WGSL+A+C++H   +LA+ AA++
Sbjct: 545 PTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAER 604

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           LL +DP + GA + L+N+Y+   +W++  + RK MK+RG+ KE+  S I + NEV+ F  
Sbjct: 605 LLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGV 664

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            D  H Q D+IY+ + E+  E+K  G++PD  S L DLE+E K +++ +HSEKLA+ +GL
Sbjct: 665 EDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGL 724

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +++ +++ +RI+KNLRVC DCH+ IK +SK+  REI++RD TRFHH+KDG CSC+DYW
Sbjct: 725 LNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 223/450 (49%), Gaps = 49/450 (10%)

Query: 153 FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS 212
           F    L+  Y   G    +R +  +M   D V W+ +I GY Q GLFD  + +F +M   
Sbjct: 77  FSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISE 136

Query: 213 NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
            V P +  +S +LS+C+    L  G  +H F++   +     + ++L+ MYA CG   +A
Sbjct: 137 RVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIA 196

Query: 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
           K +FD++ +KN+    A++S Y ++GQ E A   F++M ++D++ W++MISGY++  +  
Sbjct: 197 KVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNL 256

Query: 333 EALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           EAL +F++M     +KPD  T+ S++SACA+L  L+  ++IH YI +        V NA+
Sbjct: 257 EALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNAL 316

Query: 392 IDMYAKCGSLE---------------------------------SAREVFERMRRRNVIS 418
           I MYAK G +E                                  ARE+F ++R R+V++
Sbjct: 317 ISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVA 376

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM- 477
           WT+MI  +  +G   +AL  F  M +E  +PN  T   +L   S   +++ G++I AS  
Sbjct: 377 WTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAI 436

Query: 478 -TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN----VVIWGSLMAACRVH 532
              E + P        M    G  N+ +   +L       PN    +V W S++ A   H
Sbjct: 437 KAGESSTPSVTNALIAMYAKTGNINVAKRVFDL-------PNGKKEIVSWTSMIMALAQH 489

Query: 533 GEIELAEFAAKQLLQ--LDPDHDGALVLLS 560
           G  + A    +++L   + PDH   + +LS
Sbjct: 490 GLGKEAINLFERMLSVGMKPDHITYVGVLS 519



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 191/412 (46%), Gaps = 45/412 (10%)

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M++ N        + IL    R  +   G +VH  II   + L  +L + L+T YA  G 
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           +  A  +FD++ LK+      ++SGY++ G  E +R +  +M + D + W+A+I GY + 
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQF 120

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
                A+ +F +M    + P + T+ +V+S+CA    LD  ++IH ++ K   G  + V 
Sbjct: 121 GLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVA 180

Query: 389 NAIIDMYAKC-------------------------------GSLESAREVFERMRRRNVI 417
            ++++MYAKC                               G  E A   FE+M  R+++
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDE-SIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           SW SMI+ ++  G    AL  F+KM +E S+ P+  T   +L AC++   ++ G++I A 
Sbjct: 241 SWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHA- 299

Query: 477 MTNEYNIPPKYEHYG----CMVDLFGRANLLREALELVETMPFAP-NVVIWGSLMAACRV 531
               Y +  + E  G     ++ ++ ++  +  A  +VE    +  N++ + SL+     
Sbjct: 300 ----YILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK 355

Query: 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
            G ++ A     +L   D     A+++    Y ++  W D  EL + M   G
Sbjct: 356 LGNVKPAREIFNKLRDRDVVAWTAMIVG---YVQNGLWNDALELFRLMVNEG 404


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 239/555 (43%), Positives = 362/555 (65%), Gaps = 4/555 (0%)

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
           RL+F ++ Y +   W+ +I GY   G F E + L+  M+   + P     + +L ACS A
Sbjct: 93  RLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAA 152

Query: 232 GNLSYGEAVH-EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
            +++ G  VH + I+      D ++ +TLI MY  CGC+     +FD++L ++++  T++
Sbjct: 153 LDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSL 212

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           +  Y++ G +E A  +FD +  KD++ W+AM++GYA+N  P+EAL++F  MQ  G+K D+
Sbjct: 213 IVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDE 272

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVF 408
           VT++ VISACA LG    A  +    +++ FG   ++ V +A+IDMYAKCGS+E A +VF
Sbjct: 273 VTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVF 332

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
           ERM  RNV S++SMI  FA+HG A  A+  F++M    I PN VTFIGVL ACSHAG+V+
Sbjct: 333 ERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVE 392

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           +G+++FA M   + + P  +HY CMVDL GRA  L EAL LV+ MP  P+  +WG+L+ A
Sbjct: 393 QGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGA 452

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           CR+HG  ++A+ AA  L +L+P+  G  +LLSNIYA   RW DV ++RK M+ +G+ K  
Sbjct: 453 CRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNP 512

Query: 589 ACSRIEMNNE-VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEK 647
            CS +E     ++EF   D SH ++ +I + L +++  LK  GY P++ S   D+ DEEK
Sbjct: 513 GCSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEK 572

Query: 648 REVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTR 707
           + +++ HSEKLAL +GL+++     IRIVKNLR+CEDCH+ +   S++  REIV+RD  R
Sbjct: 573 KRLLMSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMR 632

Query: 708 FHHYKDGVCSCKDYW 722
           FHH++DG CSC ++W
Sbjct: 633 FHHFRDGRCSCGNFW 647



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 215/488 (44%), Gaps = 78/488 (15%)

Query: 3   TLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLL--LTSFSLP 60
           ++ Q  K L     + +  C+ +  +KQ HA I +          +L KLL  LT   +P
Sbjct: 30  SVRQEQKILESRLVSVLHGCTHINQVKQVHAHIFRKGLEQCC--FVLAKLLRTLTKLDVP 87

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
                   Y   +F Q+  P   +    IR  +       ++ ++  M  +G+    F+F
Sbjct: 88  MDP-----YPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTF 142

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLG-FGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
             +LKA + A  +  G QVH     +G FGSD +V   L+ MY  CG +     +FD+M 
Sbjct: 143 TALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEML 202

Query: 180 YRDI-------------------------------VPWSVMIDGYFQNGLFDEVLNLFEE 208
            RD+                               V W+ M+ GY QN    E L +FE 
Sbjct: 203 DRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFER 262

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH--LQSTLITMYANC 266
           M+ + V+ DE+ L  ++SAC++ G   Y   V +    +     ++  + S LI MYA C
Sbjct: 263 MQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKC 322

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
           G ++ A  +F+++  +N+   ++M+ G++  G    A  +FD+M++ ++           
Sbjct: 323 GSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEI----------- 371

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK-NAFGGDL 385
                               KP++VT + V++AC+H G+++Q Q++   +++ +      
Sbjct: 372 --------------------KPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSE 411

Query: 386 RVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
                ++D+  + G LE A  + + M    +   W +++ A  IHG+   A I  + + +
Sbjct: 412 DHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFE 471

Query: 445 ESIDPNGV 452
             ++PNG+
Sbjct: 472 --LEPNGI 477


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/658 (37%), Positives = 402/658 (61%), Gaps = 35/658 (5%)

Query: 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           +A+ +F KM++E +   +F+   +L + A  + L  G ++H    KLG GS   V T L+
Sbjct: 125 NAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLL 184

Query: 160 GMYGACGKILDARLMFDKMSY-------------------------------RDIVPWSV 188
            MY  CG  + A+++FD+M+                                RDIV W+ 
Sbjct: 185 NMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNS 244

Query: 189 MIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
           MI GY Q G   E L +F +M    +++PD   L+ ILSAC+    L+ G+ +H +I+  
Sbjct: 245 MISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRA 304

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL--VVSTAMVSGYSRAGQVEDARL 305
                  + + LI+MYA  G +++A+ + +     NL  +  T+++ GY++ G V+ AR 
Sbjct: 305 ETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPARE 364

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           IF+++ ++D++ W+AMI GY +N    +AL+LF  M   G +P+  T+ +++S  + L +
Sbjct: 365 IFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTI 424

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMIN 424
           L+  ++IH    K        V NA+I MYAK G++  A+ VF+    ++ ++SWTSMI 
Sbjct: 425 LEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIM 484

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
           A A HG  + A+  F +M    + P+ +T++GVL AC+H GLV++GR+ +  MT  + I 
Sbjct: 485 ALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIE 544

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P   HY CM+DL+GRA LL+EA   +E+MP  P+ + WGSL+A+C++H   +LA+ AA++
Sbjct: 545 PTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAER 604

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           LL +DP + GA + L+N+Y+   +W++  + RK MK+RG+ KE+  S I + NEV+ F  
Sbjct: 605 LLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGV 664

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            D  H Q D+IY+ + E+  E+K  G++PD  S L DLE+E K +++ +HSEKLA+ +GL
Sbjct: 665 EDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGL 724

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +++ +++ +RI+KNLRVC DCH+ IK +SK+  REI++RD TRFHH+KDG CSC+DYW
Sbjct: 725 LNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  205 bits (522), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 144/514 (28%), Positives = 238/514 (46%), Gaps = 80/514 (15%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           F  IL+   R +    G  VH    K G     ++   L+  Y   G +  A  +FD+M 
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 180 YR-------------------------------DIVPWSVMIDGYFQNGLFDEVLNLFEE 208
            +                               D V W+ +I GY Q GLFD  + +F +
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M    V P +  +S +LS+C+    L  G  +H F++   +     + ++L+ MYA CG 
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
             +AK +FD++ +KN+    A++S Y ++GQ E A   F++M ++D++ W++MISGY++ 
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 329 NHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
            +  EAL +F++M     +KPD  T+ S++SACA+L  L+  ++IH YI +        V
Sbjct: 253 GYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAV 312

Query: 388 NNAIIDMYAKCGSLE---------------------------------SAREVFERMRRR 414
            NA+I MYAK G +E                                  ARE+F ++R R
Sbjct: 313 GNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDR 372

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           +V++WT+MI  +  +G   +AL  F  M +E  +PN  T   +L   S   +++ G++I 
Sbjct: 373 DVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIH 432

Query: 475 ASM--TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN----VVIWGSLMAA 528
           AS     E + P        M    G  N+ +   +L       PN    +V W S++ A
Sbjct: 433 ASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDL-------PNGKKEIVSWTSMIMA 485

Query: 529 CRVHGEIELAEFAAKQLLQ--LDPDHDGALVLLS 560
              HG  + A    +++L   + PDH   + +LS
Sbjct: 486 LAQHGLGKEAINLFERMLSVGMKPDHITYVGVLS 519



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 192/412 (46%), Gaps = 45/412 (10%)

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M++ N        + IL    R  +   G +VH  II   + L  +L + L+T YA  G 
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           +  A  +FD++ LK+      ++SGY++ G  E +R +  +M + D + W+A+I GY + 
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQF 120

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
                A+ +F +M    + P + T+ +V+S+CA    LD  ++IH ++ K   G  + V 
Sbjct: 121 GLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVA 180

Query: 389 NAIIDMYAKC-------------------------------GSLESAREVFERMRRRNVI 417
            ++++MYAKC                               G  E A   FE+M  R+++
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDE-SIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           SW SMI+ ++  G    AL+ F+KM +E S+ P+  T   +L AC++   ++ G++I A 
Sbjct: 241 SWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHA- 299

Query: 477 MTNEYNIPPKYEHYG----CMVDLFGRANLLREALELVETMPFAP-NVVIWGSLMAACRV 531
               Y +  + E  G     ++ ++ ++  +  A  +VE    +  N++ + SL+     
Sbjct: 300 ----YILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK 355

Query: 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
            G ++ A     +L   D     A+++    Y ++  W D  EL + M   G
Sbjct: 356 LGNVKPAREIFNKLRDRDVVAWTAMIVG---YVQNGLWNDALELFRLMVNEG 404


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/575 (42%), Positives = 371/575 (64%), Gaps = 6/575 (1%)

Query: 151 DPFVQTGLVGMYGA--CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
           DPF  + +V        G +  ARL+F+++        + +I GY    L  + +  ++ 
Sbjct: 9   DPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQL 68

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M +  ++PD      +  +C   G L  G+ +H        A DA++Q+TL+ MY+NCGC
Sbjct: 69  MMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGC 125

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM-VEKDLICWSAMISGYAE 327
           +  A+ +FDK++ K++V    M+  Y++     +A  +F +M +  +L CW+ MI+G+ E
Sbjct: 126 LVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVE 185

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
           ++  +EAL LFNEMQ+ G+K DKVTM S++ AC HLG L+  + +H+YI+K     D+ +
Sbjct: 186 DSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVAL 245

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
             A++DMYAKCGS+ESA  VF+ M  ++V++WT++I   A+ G    AL  F++M+   +
Sbjct: 246 GTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEV 305

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            P+ +TF+GVL ACSHAGLV+EG   F SM N+Y I P  EHYGCMVD+ GRA  + EA 
Sbjct: 306 KPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAE 365

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
           +L++ MP AP+  +   L++ACR+HG + +AE AA+QL++LDP + G  VLLSNIY+  K
Sbjct: 366 DLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMK 425

Query: 568 RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627
            W+   ++R+ M ER I K   CS IE+   V+EF+  D SH Q+ +IYE L++++  LK
Sbjct: 426 NWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLK 485

Query: 628 PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHN 687
            AGYVPD    L D++++EK   +  HSEKLA+ +GL+S+   + IR+VKNLRVC DCH+
Sbjct: 486 SAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHS 545

Query: 688 FIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            +K +S+VY REI++RDR RFHH+  G CSC+D+W
Sbjct: 546 AMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 210/427 (49%), Gaps = 75/427 (17%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           SL YA  +F+QIP P +   N  IR  +  + P+ A+  +  M+ +GL  DRF+FP + K
Sbjct: 27  SLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFK 86

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           +      L EG Q+H   TKLGF SD ++Q  L+ MY  CG ++ AR +FDKM  + +V 
Sbjct: 87  SCGV---LCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVS 143

Query: 186 WS--------------------------------VMIDGYFQNGLFDEVLNLFEEMKMSN 213
           W+                                +MI+G+ ++  ++E L+LF EM++S 
Sbjct: 144 WATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSG 203

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           V+ D++ ++ +L AC+  G L  G+ +H +I    + +D  L + L+ MYA CG ++ A 
Sbjct: 204 VKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAM 263

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
            +F ++  K+++  TA++ G +  GQ                                 +
Sbjct: 264 RVFQEMPEKDVMTWTALIVGLAMCGQ-------------------------------GLK 292

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA-QRIHLYIDKNAFGGDLRVNNAII 392
           AL+LF+EMQ+  +KPD +T + V++AC+H G++++     +   +K      +     ++
Sbjct: 293 ALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMV 352

Query: 393 DMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI--DP 449
           DM  + G +  A ++ + M    +      +++A  IHG+    L+   +   + I  DP
Sbjct: 353 DMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGN----LVVAERAAQQLIELDP 408

Query: 450 -NGVTFI 455
            NG T++
Sbjct: 409 KNGGTYV 415


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/702 (38%), Positives = 401/702 (57%), Gaps = 70/702 (9%)

Query: 76  QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
           ++PA  SR      RA   ++ P  A  ++  ML+  L  D +++P +++A +      E
Sbjct: 178 KMPAKASR------RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWE 231

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
             QVH    KLGF SD +V+  L+  +  C  + DA  +F++ S  D V W+ ++ GY +
Sbjct: 232 AKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIE 291

Query: 196 NGLFDEVLNLFEEMKMSNVEPD--------------------------EMVLSKILSACS 229
            G  +E  +++ +M   ++                             +MV    L AC 
Sbjct: 292 IGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACF 351

Query: 230 RAGNLSYGEAVHEFI--------IDNNVALDA---------------------------- 253
           +   + Y EA+  F+        +D  VA+ A                            
Sbjct: 352 QQNEM-YEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESY 410

Query: 254 -HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
            +LQ+ LI MY+ CG + +A+ LFD+  L +L+   +M+SGY +   V++A+ IFD M E
Sbjct: 411 INLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPE 470

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           KD++ WS+MISGYA+N+   E L LF EMQ+ G KPD+ T++SVISACA L  L+Q + +
Sbjct: 471 KDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWV 530

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H YI +N    ++ +   +IDMY KCG +E+A EVF  M  + + +W ++I   A++G  
Sbjct: 531 HAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLV 590

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
            ++L  F+ MK   + PN +TF+GVL AC H GLVDEG+  F SM +++ I P  +HYGC
Sbjct: 591 ESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGC 650

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           MVDL GRA  L+EA EL+  MP  P+V  WG+L+ AC+ HG+ E+     ++L++L PDH
Sbjct: 651 MVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDH 710

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
           DG  VLLSNIYA   +W DV E+R  M +  +LK   CS IE N  ++EFL  D++H   
Sbjct: 711 DGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDM 770

Query: 613 DQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSC 672
           D I + L E+  +LK  GY PDI+  L+D+++EEK   +  HSEKLA+ +GLI+    + 
Sbjct: 771 DAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTP 830

Query: 673 IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDG 714
           IRI+KNLR+C DCH   KL+SK + R+IV+RDR RFHH++ G
Sbjct: 831 IRIMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQG 872


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 259/635 (40%), Positives = 381/635 (60%), Gaps = 35/635 (5%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK---ILDARLMFDKMS 179
           ++  +  A  L + +Q+H L  K     + FV   L+    AC     +L AR +FD++ 
Sbjct: 6   VMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIP 65

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP-DEMVLSKILSACSRAGNLSYGE 238
             D   W+ MI  Y  +    E ++LF +M+     P D   LS ++ AC R  +   G+
Sbjct: 66  SPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQ 125

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG------------------------ 274
            +H  ++   +  D  +++ LI MYA  G +++A+                         
Sbjct: 126 KLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVG 185

Query: 275 -------LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
                  LFD++  ++LV    M+ G++  G V  A+ +FD+  E+DLI WS+MI+ YA+
Sbjct: 186 EINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAK 245

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
                EAL+LF+EMQ+  + PDKVTM+SV+SAC  +G L   + IH  I++N    DL++
Sbjct: 246 ARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKL 305

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
             +++DMYAKCG ++++  VF  M  R+V +W++MI   A HG    AL  F+KM  E I
Sbjct: 306 GTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDI 365

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            PN VTFIGVL ACSH GLVDEG   F SM+  Y++ PK EHYGC+VD+ GRA  L+EA+
Sbjct: 366 KPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAM 425

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
           EL+++MPFAP+ ++W +L+ ACR++  +E+AE A   LL+L+P  DG  VLLSNIY++ K
Sbjct: 426 ELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAK 485

Query: 568 RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627
            W  V  +R+ MK   I K    S IE++N V+EF+  D+SH ++ +I   L+E+ + LK
Sbjct: 486 EWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLK 545

Query: 628 PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHN 687
             GY P   S L D +++EK   +  HSEKLA+ +GL+S+   S IRIVKNLRVC+DCH 
Sbjct: 546 ANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHI 605

Query: 688 FIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            IKL+S+ Y R I++RDR RFHH+ +G CSCKDYW
Sbjct: 606 AIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 224/451 (49%), Gaps = 38/451 (8%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           + + + L  + Q HA I+K S      N +L KLL   F+   ++ + L YA S+F +IP
Sbjct: 10  LQNATKLNQIIQIHALIIKTSLD--GNNFVLAKLLRRLFA--CSSANDLLYARSVFDEIP 65

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLN-EGLTIDRFSFPPILKAIARAEGLLEGM 137
           +P + + N  IRA   S  P+ ++ +F +M + E + ID +S   +++A  R +    G 
Sbjct: 66  SPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQ 125

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           ++H    K+G GSD FV+T L+ MY   G I  AR + D+M++ D+VP++V++  Y + G
Sbjct: 126 KLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVG 185

Query: 198 LFDEVLNLFEEMKMSNV---------------------------EPDEMVLSKILSACSR 230
             +   +LF+ M   ++                           E D +  S +++A ++
Sbjct: 186 EINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAK 245

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV----LLKNLVV 286
           A   +    +   +   NV  D     ++++   + G + M K + + +    +  +L +
Sbjct: 246 ARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKL 305

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346
            T++V  Y++ G ++++  +F+ M  +D+  WSAMI G A +   + AL  F++M    +
Sbjct: 306 GTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDI 365

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDK-NAFGGDLRVNNAIIDMYAKCGSLESAR 405
           KP+ VT + V+SAC+H+G++D+       + K       +     ++D+  + G L+ A 
Sbjct: 366 KPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAM 425

Query: 406 EVFERMR-RRNVISWTSMINAFAIHGDARNA 435
           E+ + M    + I W +++ A  I+ +   A
Sbjct: 426 ELIKSMPFAPDAIVWRALLGACRIYKNVEIA 456


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 265/723 (36%), Positives = 412/723 (56%), Gaps = 39/723 (5%)

Query: 1   MSTLSQPTKPLTLP-TSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL 59
           MS ++ P+    +    T IS   ++ H+KQ H  ++   H HH  ++ L+ LLL     
Sbjct: 1   MSIVTVPSATSKVQQIKTLISVACTVNHLKQIHVSLIN-HHLHH--DTFLVNLLLKRTLF 57

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
              T     Y+  +FS    P   + N  I     +H     L +FL +   GL +  F+
Sbjct: 58  FRQTK----YSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFT 113

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           FP +LKA  RA     G+ +H L  K GF  D    T L+ +Y   G++ DA  +FD++ 
Sbjct: 114 FPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIP 173

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            R +V W+ +  GY  +G   E ++LF++M    V+PD   + ++LSAC   G+L  GE 
Sbjct: 174 DRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEW 233

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           + +++ +                      M+M K  F         V T +V+ Y++ G+
Sbjct: 234 IVKYMEE----------------------MEMQKNSF---------VRTTLVNLYAKCGK 262

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           +E AR +FD MVEKD++ WS MI GYA N+ P+E ++LF +M    +KPD+ +++  +S+
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSS 322

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           CA LG LD  +     ID++ F  +L + NA+IDMYAKCG++    EVF+ M+ ++++  
Sbjct: 323 CASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIM 382

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            + I+  A +G  + +   F + +   I P+G TF+G+L  C HAGL+ +G   F +++ 
Sbjct: 383 NAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISC 442

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
            Y +    EHYGCMVDL+GRA +L +A  L+  MP  PN ++WG+L++ CR+  + +LAE
Sbjct: 443 VYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAE 502

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
              K+L+ L+P + G  V LSNIY+   RW +  E+R  M ++G+ K    S IE+  +V
Sbjct: 503 TVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKV 562

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
           +EFL  D+SH  +D+IY KL ++ +E++  G+VP       D+E+EEK  V+ +HSEKLA
Sbjct: 563 HEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLA 622

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           +  GLIS+     IR+VKNLRVC DCH  +KL+SK+  REIV+RD  RFH + +G CSC 
Sbjct: 623 VALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCN 682

Query: 720 DYW 722
           DYW
Sbjct: 683 DYW 685


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 268/700 (38%), Positives = 406/700 (58%), Gaps = 43/700 (6%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV 84
           L H+ Q + Q++ +S  H        + L+  F         + YA   F ++  P   +
Sbjct: 15  LKHLDQVYVQLI-VSGLHKC------RFLMIKFINACLHFGDVNYAHKAFREVSEPDILL 67

Query: 85  SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA--RAEGLLEGMQVHGL 142
            N  I+  +  +     +++++ M    +  + F+F  +LKA      EG+  G Q+HG 
Sbjct: 68  WNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGI--GKQIHGQ 125

Query: 143 GTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202
             K GFGS+ FVQ  LV MY   G+I  AR++FDK+  R +V W+ +I GY QNG   E 
Sbjct: 126 TFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEA 185

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           LN+F+EM+  NV+PD + L  +++A +   +L  G+++H  +    +  +  +  +L TM
Sbjct: 186 LNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTM 245

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           YA                               + G VE AR  F++M + +LI W+AMI
Sbjct: 246 YA-------------------------------KRGLVEVARFFFNRMEKPNLILWNAMI 274

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
           SGYA N + +EA+KLF EM    ++ D +TM S + A A +G L+ A+ +  YI K+ + 
Sbjct: 275 SGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYR 334

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            D  VN  +IDMYAKCGS+  AR VF+R+  ++V+ W+ MI  + +HG  + A+  +N+M
Sbjct: 335 DDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEM 394

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
           K   + PN  TFIG+L AC ++GLV EG E+F  M  ++ I P ++HY C+VDL GRA  
Sbjct: 395 KQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGRAGY 453

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
           L +A + + +MP  P V +WG+L++AC++H ++ L E AA+QL  LDP + G  V LSN+
Sbjct: 454 LNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNL 513

Query: 563 YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
           YA    W  V  +R  M ++G+ K+   S IE+N  +  F   DRSH ++ +I+E+L+ +
Sbjct: 514 YASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRL 573

Query: 623 ISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVC 682
              LK AGYVP + S L DL  EE  E +  HSE+LA+ YG+IS+   + +RI KNLR C
Sbjct: 574 EKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRAC 633

Query: 683 EDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            +CH+ IKL+SK+  REI+IRD  RFHH+KDGVCSC D+W
Sbjct: 634 INCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/609 (40%), Positives = 369/609 (60%), Gaps = 37/609 (6%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           DP +   L+  Y A G+   AR +FD+   +++V ++VMI  Y  N L+ E L++F+ M 
Sbjct: 70  DPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVML 129

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
                PD      +L ACS   NL  G  VH+ I+   +  +  + + L+ MY  CGC+ 
Sbjct: 130 SCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLR 189

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI------------------------ 306
            A+ + D++  +++V   +MV+GY+++GQ +DA  I                        
Sbjct: 190 EARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVC 249

Query: 307 -------------FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
                        F++M +K+LI W+ MI+ Y  N+ P EA+ LF +M+ CGMKPD VT+
Sbjct: 250 YTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTI 309

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
            S++ AC  L  L   +R+H YI+K     +L + NA++DMYAKCG LE AR+VF++MR 
Sbjct: 310 ASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRL 369

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           R+V+SWTSM++A+   G   +A+  F KM D   +P+ + F+ VL ACSH GL+D+GR  
Sbjct: 370 RDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHY 429

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           F  MT +Y I P+ EH+ CMVDLFGRA  + EA   ++ MP  PN  +WG+L++ACRVH 
Sbjct: 430 FRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHS 489

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
           ++++   AA  L QL P   G  VLLSNIYAK   W+DV  +R +MK+ GI K    S +
Sbjct: 490 KMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNV 549

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW 653
           E+N +V+ FL  D+ H Q   IY +L+ ++ ++K  GY+P   SAL D+E E+K   +  
Sbjct: 550 ELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAI 609

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HSEKLA+ + ++++K+ + IRI KNLRVC DCH  IKL+SK+ +R I++RD  RFHH+ +
Sbjct: 610 HSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSN 669

Query: 714 GVCSCKDYW 722
           G+CSC DYW
Sbjct: 670 GICSCGDYW 678



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 193/385 (50%), Gaps = 43/385 (11%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  IR+   ++    AL +F  ML+     D ++FP +LKA +  + L  G+QVH    K
Sbjct: 106 NVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVK 165

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
           +G  ++ F+   LV MYG CG + +AR + D+M YRD+V W+ M+ GY Q+G FD+ L +
Sbjct: 166 VGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEI 225

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF--------IIDNNVALDAHLQS 257
            +EM   N+  D   ++  LS      +L   + +H          +I  NV +  ++ +
Sbjct: 226 CKEMDSLNLNHDAGTMAS-LSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNN 284

Query: 258 -------TLITMYANCG--------------CMDMAKGLFDKVLLK---------NLVVS 287
                  +L      CG              C D++     + L K         NL++ 
Sbjct: 285 SMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLE 344

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
            A++  Y++ G +E+AR +FD+M  +D++ W++M+S Y  +    +A+ LF +M   G  
Sbjct: 345 NALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQN 404

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAR 405
           PD +  +SV+SAC+H G+LDQ  R +  +    +G   R+ +   ++D++ + G +E A 
Sbjct: 405 PDSIAFVSVLSACSHTGLLDQG-RHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAY 463

Query: 406 EVFERM-RRRNVISWTSMINAFAIH 429
              ++M    N   W ++++A  +H
Sbjct: 464 SFIKQMPMEPNERVWGALLSACRVH 488



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 136/321 (42%), Gaps = 51/321 (15%)

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
           + +I+ ++ +D  L   L+  Y+  G   +A+ +FD+ L KN+V                
Sbjct: 60  KIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVF--------------- 104

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
                           ++ MI  Y  NN   EAL +F  M  C   PD  T   V+ AC+
Sbjct: 105 ----------------FNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACS 148

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
            L  L    ++H  I K     +L + NA++ MY KCG L  AR+V ++M  R+V+SW S
Sbjct: 149 GLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNS 208

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL--VDEGREIFASMTN 479
           M+  +A  G   +AL    +M   +++ +  T   +     +  L  V     +F  MT 
Sbjct: 209 MVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTK 268

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALEL---VETMPFAPNVVIWGSLMAAC------- 529
           +  I      +  M+ ++   ++  EA+ L   +E     P+ V   SL+ AC       
Sbjct: 269 KNLIS-----WNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALF 323

Query: 530 ---RVHGEIELAEFAAKQLLQ 547
              R+H  IE        LL+
Sbjct: 324 LGRRLHKYIEKGNLQPNLLLE 344


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 255/660 (38%), Positives = 389/660 (58%), Gaps = 35/660 (5%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L  A  +F ++P   +      I  +        A+ +FL+M+  G   DRF+   ++ A
Sbjct: 221 LVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISA 280

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC---GKILDARLMFDKMSYRDI 183
            A  E LL G Q+H    + G   D  V   L+ MY  C   G +  AR +FD++   ++
Sbjct: 281 CANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNV 340

Query: 184 VPWSVMIDGYFQNGLFDE-VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
             W+ MI GY Q G +DE  L+LF  M +++V P+    S  L AC+    L  GE V  
Sbjct: 341 FSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFT 400

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
             +             L     NC                   V+ +++S Y+R+G+++D
Sbjct: 401 HAVK------------LGFSSVNC-------------------VANSLISMYARSGRIDD 429

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           AR  FD + EK+LI ++ +I  YA+N + +EAL+LFNE++  GM     T  S++S  A 
Sbjct: 430 ARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAAS 489

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           +G + + ++IH  + K+    +  V NA+I MY++CG++ESA +VFE M  RNVISWTS+
Sbjct: 490 IGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSI 549

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I  FA HG A  AL  F+KM +E + PN VT+I VL ACSH GLV+EG + F SM  E+ 
Sbjct: 550 ITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHG 609

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           + P+ EHY CMVD+ GR+  L EA++ + +MP+  + ++W + + ACRVHG +EL + AA
Sbjct: 610 VIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAA 669

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           K +++ +P    A +LLSN+YA   +W +V  +RK+MKE+ ++KE  CS +E+ N+V++F
Sbjct: 670 KMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKF 729

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
              D SH +  +IY++L  +  ++K  GYVP++   L D+E+E+K +++  HSEK+A+ +
Sbjct: 730 YVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAF 789

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           GLIS+ K   IR+ KNLR+C DCH+ IK +S    REI++RD  RFHH KDG CSC +YW
Sbjct: 790 GLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 125/282 (44%), Gaps = 34/282 (12%)

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
            NG   + ++  E M      PD    S  L  C R  +   G  VHE +  +++ LD+ 
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM-VEK 313
             ++LI++Y+ C                               GQ E A  IF  M   +
Sbjct: 103 TLNSLISLYSKC-------------------------------GQWEKATSIFQLMGSSR 131

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
           DLI WSAM+S +A NN    AL  F +M   G  P++    +   AC+    +     I 
Sbjct: 132 DLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIF 191

Query: 374 LYIDKNAF-GGDLRVNNAIIDMYAKC-GSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
            ++ K  +   D+ V   +IDM+ K  G L SA +VFE+M  RN ++WT MI      G 
Sbjct: 192 GFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGY 251

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           A  A+  F +M     +P+  T  GV+ AC++  L+  G+++
Sbjct: 252 AGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQL 293


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/609 (40%), Positives = 369/609 (60%), Gaps = 37/609 (6%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           DP +   L+  Y A G+   AR +FD+   +++V ++VMI  Y  N L+ E L++F+ M 
Sbjct: 70  DPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVML 129

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
                PD      +L ACS   NL  G  VH+ I+   +  +  + + L+ MY  CGC+ 
Sbjct: 130 SCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLR 189

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI------------------------ 306
            A+ + D++  +++V   +MV+GY+++GQ +DA  I                        
Sbjct: 190 EARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVC 249

Query: 307 -------------FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
                        F++M +K+LI W+ MI+ Y  N+ P EA+ LF +M+ CGMKPD VT+
Sbjct: 250 YTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTI 309

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
            S++ AC  L  L   +R+H YI+K     +L + NA++DMYAKCG LE AR+VF++MR 
Sbjct: 310 ASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRL 369

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           R+V+SWTSM++A+   G   +A+  F KM D   +P+ + F+ VL ACSH GL+D+GR  
Sbjct: 370 RDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHY 429

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           F  MT +Y I P+ EH+ CMVDLFGRA  + EA   ++ MP  PN  +WG+L++ACRVH 
Sbjct: 430 FRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHS 489

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
           ++++   AA  L QL P   G  VLLSNIYAK   W+DV  +R +MK+ GI K    S +
Sbjct: 490 KMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNV 549

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW 653
           E+N +V+ FL  D+ H Q   IY +L+ ++ ++K  GY+P   SAL D+E E+K   +  
Sbjct: 550 ELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAI 609

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HSEKLA+ + ++++K+ + IRI KNLRVC DCH  IKL+SK+ +R I++RD  RFHH+ +
Sbjct: 610 HSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSN 669

Query: 714 GVCSCKDYW 722
           G+CSC DYW
Sbjct: 670 GICSCGDYW 678



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 193/385 (50%), Gaps = 43/385 (11%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  IR+   ++    AL +F  ML+     D ++FP +LKA +  + L  G+QVH    K
Sbjct: 106 NVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVK 165

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
           +G  ++ F+   LV MYG CG + +AR + D+M YRD+V W+ M+ GY Q+G FD+ L +
Sbjct: 166 VGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEI 225

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF--------IIDNNVALDAHLQS 257
            +EM   N+  D   ++  LS      +L   + +H          +I  NV +  ++ +
Sbjct: 226 CKEMDSLNLNHDAGTMAS-LSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNN 284

Query: 258 -------TLITMYANCG--------------CMDMAKGLFDKVLLK---------NLVVS 287
                  +L      CG              C D++     + L K         NL++ 
Sbjct: 285 SMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLE 344

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
            A++  Y++ G +E+AR +FD+M  +D++ W++M+S Y  +    +A+ LF +M   G  
Sbjct: 345 NALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQN 404

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAR 405
           PD +  +SV+SAC+H G+LDQ  R +  +    +G   R+ +   ++D++ + G +E A 
Sbjct: 405 PDSIAFVSVLSACSHTGLLDQG-RHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAY 463

Query: 406 EVFERM-RRRNVISWTSMINAFAIH 429
              ++M    N   W ++++A  +H
Sbjct: 464 SFIKQMPMEPNERVWGALLSACRVH 488



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 136/321 (42%), Gaps = 51/321 (15%)

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
           + +I+ ++ +D  L   L+  Y+  G   +A+ +FD+ L KN+V                
Sbjct: 60  KIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVF--------------- 104

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
                           ++ MI  Y  NN   EAL +F  M  C   PD  T   V+ AC+
Sbjct: 105 ----------------FNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACS 148

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
            L  L    ++H  I K     +L + NA++ MY KCG L  AR+V ++M  R+V+SW S
Sbjct: 149 GLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNS 208

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL--VDEGREIFASMTN 479
           M+  +A  G   +AL    +M   +++ +  T   +     +  L  V     +F  MT 
Sbjct: 209 MVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTK 268

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALEL---VETMPFAPNVVIWGSLMAAC------- 529
           +  I      +  M+ ++   ++  EA+ L   +E     P+ V   SL+ AC       
Sbjct: 269 KNLIS-----WNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALF 323

Query: 530 ---RVHGEIELAEFAAKQLLQ 547
              R+H  IE        LL+
Sbjct: 324 LGRRLHKYIEKGNLRPNLLLE 344


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 264/720 (36%), Positives = 406/720 (56%), Gaps = 46/720 (6%)

Query: 11  LTLPTSTA--------ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT 62
           +T+P+ST+        IS  S+  H+KQ H  ++   H H   ++ L+ LLL      T 
Sbjct: 4   VTVPSSTSKVQQIKTLISVASTFNHLKQVHVSLI---HHHLHHDTFLVNLLLKR----TL 56

Query: 63  TPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
                +Y+  +FS    P   + N  I     +H     L +FL +   GL +  F+FP 
Sbjct: 57  FFRQTHYSFLLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPL 116

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +LKA  RA     G+ +H L  K GF  D    T L+ +Y   G++ DA  +F+++  R 
Sbjct: 117 VLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERS 176

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +V W+ +  GY   G   E ++LF++M    V PD   + ++LSAC   G+L  GE + +
Sbjct: 177 VVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVK 236

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
                      H++            M+M K  F         V T +V+ Y++ G++E 
Sbjct: 237 -----------HMEE-----------MEMQKNSF---------VRTTLVNLYAKCGKMEK 265

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           AR +FD M EKD++ WS MI GYA N+ P+E ++ F +M    +KPD+ +++  +S+CA 
Sbjct: 266 ARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCAS 325

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           LG LD  +     ID++ F  +L + NA+IDMYAKCG++    EVF+ M+ ++++   + 
Sbjct: 326 LGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAA 385

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I+  A +G  + +   F + +   I P+G TF+G+L  C HAGL+ +G   F +++  Y 
Sbjct: 386 ISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYA 445

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           +    EHYGCMVDL+GRA +L +A  L+  MP  PN ++WG+L++ CR+  + +LAE   
Sbjct: 446 LKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVL 505

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           K+L+ L+P + G  V LSNIY+   RW +  E+R  M  +G+ K    S IE+   V+EF
Sbjct: 506 KELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEF 565

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
           L  D+SH  +D+IY KL ++ +E++  G+VP       D+EDEEK  V+  HSEKLA+ +
Sbjct: 566 LADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKLAVAF 625

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           GLIS+     IR+VKNLRVC DCH  +KL+SK+  REIV+RD  RFH + +G CSC DYW
Sbjct: 626 GLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 257/657 (39%), Positives = 393/657 (59%), Gaps = 35/657 (5%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A+++  +M+ EG+   +F+   +L ++A    L  G +VH    KLG   +  V   L+ 
Sbjct: 130 AIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLN 189

Query: 161 MYGACGKILDARLMFDKM-------------------------------SYRDIVPWSVM 189
           MY  CG  + A+++FD+M                               + RDIV W+ M
Sbjct: 190 MYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSM 249

Query: 190 IDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           I GY Q G     L++F +M + S + PD   L+ +LSAC+    L  GE +H  I+   
Sbjct: 250 ISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTG 309

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS--TAMVSGYSRAGQVEDARLI 306
             +   + + LI+MY+ CG ++ A+ L ++   K+L +   TA++ GY + G + +A+ I
Sbjct: 310 FDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNI 369

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           FD + ++D++ W+AMI GY ++    EA+ LF  M     +P+  T+ +++S  + L  L
Sbjct: 370 FDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASL 429

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINA 425
              ++IH    K+     + V+NA+I MYAK GS+ SA   F+ +R  R+ +SWTSMI A
Sbjct: 430 GHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIA 489

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
            A HG A  AL  F  M  E + P+ +T++GV  AC+HAGLV++GR+ F  M +   I P
Sbjct: 490 LAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIP 549

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
              HY CMVDLFGRA LL+EA E +E MP  P+VV WGSL++ACRV+  I+L + AA++L
Sbjct: 550 TLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERL 609

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
           L L+P++ GA   L+N+Y+   +W++  ++RKSMK+  + KE+  S IE+ ++V+ F   
Sbjct: 610 LLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVE 669

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           D  H Q ++IY  + ++  E+K  GYVPD  S L DLE+E K +++  HSEKLA+ +GLI
Sbjct: 670 DGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLI 729

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S+   + +RI+KNLRVC DCH  IK +SK+  REI++RD TRFHH+KDG CSC+DYW
Sbjct: 730 STPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 133/495 (26%), Positives = 226/495 (45%), Gaps = 68/495 (13%)

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR--- 181
           K++ ++ G      VH    K G     ++   L+ +Y   G  L AR +FD+M  R   
Sbjct: 22  KSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAF 81

Query: 182 ----------------------------DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN 213
                                       D V W+ MI GY   G + + + +  EM    
Sbjct: 82  SWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREG 141

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           +EP +  L+ +L++ +    L  G+ VH FI+   +  +  + ++L+ MYA CG   MAK
Sbjct: 142 IEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAK 201

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
            +FD++++K++    AM++ + + GQ++ A   F+QM E+D++ W++MISGY +  +   
Sbjct: 202 VVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLR 261

Query: 334 ALKLFNEMQVCGM-KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
           AL +F++M    M  PD+ T+ SV+SACA+L  L   ++IH +I    F     V NA+I
Sbjct: 262 ALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALI 321

Query: 393 DMYAKCGSLESARE---------------------------------VFERMRRRNVISW 419
            MY++CG +E+AR                                  +F+ ++ R+V++W
Sbjct: 322 SMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAW 381

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           T+MI  +  HG    A+  F  M  E   PN  T   +L   S    +  G++I  S   
Sbjct: 382 TAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVK 441

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA- 538
              I         ++ ++ +A  +  A    + +    + V W S++ A   HG  E A 
Sbjct: 442 SGEIYS-VSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEAL 500

Query: 539 EFAAKQLLQ-LDPDH 552
           E     L++ L PDH
Sbjct: 501 ELFETMLMEGLRPDH 515



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 164/337 (48%), Gaps = 43/337 (12%)

Query: 216 PDEMVLSKILSACS----RAGNLSYG----EAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           P  + LS +L  C+    ++ N S G    + VH  +I + +    +L + L+ +Y+  G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
               A+ LFD++ L+       ++S Y++ G ++ +   FD++ ++D + W+ MI GY  
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKN 123

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
                +A+++  EM   G++P + T+ +V+++ A    L+  +++H +I K    G++ V
Sbjct: 124 IGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSV 183

Query: 388 NNAIIDMYAKCGSLESAREVFER-------------------------------MRRRNV 416
           +N++++MYAKCG    A+ VF+R                               M  R++
Sbjct: 184 SNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243

Query: 417 ISWTSMINAFAIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           ++W SMI+ +   G    AL  F+KM +D  + P+  T   VL AC++   +  G +I +
Sbjct: 244 VTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHS 303

Query: 476 SM-TNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
            + T  ++I         ++ ++ R   +  A  L+E
Sbjct: 304 HIVTTGFDISGIV--LNALISMYSRCGGVETARRLIE 338


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/742 (35%), Positives = 414/742 (55%), Gaps = 43/742 (5%)

Query: 20  SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA 79
           SS +SL+  +Q HA IL+L+    +Q    L   L SF     + S+   +L++ S +P 
Sbjct: 11  SSTASLSQARQAHALILRLNLFSDTQ----LTTSLLSFYANALSLSTPQLSLTLSSHLPH 66

Query: 80  PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQV 139
           P     +  I A + SH   H L  F  +    L  D F  P  +K+ A    L  G Q+
Sbjct: 67  PTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQL 126

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
           H      GF +D  V + L  MY  C +ILDAR +FD+M  RD+V WS MI GY + GL 
Sbjct: 127 HAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLV 186

Query: 200 DEVLNLFEEMKMSNVEP------------------DEMV-----------------LSKI 224
           +E   LF EM+   VEP                  DE V                 +S +
Sbjct: 187 EEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCV 246

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L A     ++  G  VH ++I   +  D  + S ++ MY  CGC+     +FD+V    +
Sbjct: 247 LPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEI 306

Query: 285 VVSTAMVSGYSRAGQVEDARLIF----DQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
               A ++G SR G V+ A  +F    DQ +E +++ W+++I+  ++N    EAL+LF +
Sbjct: 307 GSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRD 366

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQ  G++P+ VT+ S+I AC ++  L   + IH +  +     D+ V +A+IDMYAKCG 
Sbjct: 367 MQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGR 426

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           ++ AR  F++M   N++SW +++  +A+HG A+  +  F+ M      P+ VTF  VL A
Sbjct: 427 IQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSA 486

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           C+  GL +EG   + SM+ E+ I PK EHY C+V L  R   L EA  +++ MPF P+  
Sbjct: 487 CAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDAC 546

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           +WG+L+++CRVH  + L E AA++L  L+P + G  +LLSNIYA    W +   +R+ MK
Sbjct: 547 VWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMK 606

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
            +G+ K    S IE+ ++V+  L  D+SH Q   I EKL+++  ++K +GY+P  +  L 
Sbjct: 607 SKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQ 666

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D+E+++K +++  HSEKLA+  GL+++     ++++KNLR+C+DCH  IK++S++  REI
Sbjct: 667 DVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREI 726

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
            +RD  RFHH+KDGVCSC D+W
Sbjct: 727 YVRDTNRFHHFKDGVCSCGDFW 748


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 240/589 (40%), Positives = 376/589 (63%), Gaps = 2/589 (0%)

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
           L+ +  H L T     S P  +   V  + +      A+L+F  +   ++  W+  +  +
Sbjct: 31  LKQLHAHLLKTNSPLSSLPLSRVASVCAFNS--SFSYAKLIFQLLDASEVTHWNTCLRSF 88

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
            +     + ++LF  ++  ++ PD    S +L ACSR  ++  G+ VH ++    +  + 
Sbjct: 89  AEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNM 148

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
            LQ+ ++ +YA CG + +A+ +FDK+  ++++    M++   + G  E A  +F +M E+
Sbjct: 149 FLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPER 208

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
           ++  W++MI GYA+    +EA+ LF EM+  G+ P++VT+++V+ ACA +G L   +RIH
Sbjct: 209 NVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIH 268

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
            + +++ +  ++RV N +IDMY KCG LE A  +F+ M  R V+SW++MI   A HG A 
Sbjct: 269 DFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAE 328

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
           +AL  FNKM +  + PN VTFIG+L+ACSH G+V++GR+ FASMT +Y I P+ EHYGCM
Sbjct: 329 DALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCM 388

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553
           VDLF RA LL+EA E +  MP APN V+WG+L+  C+VH  I+LAE A + L +LDP +D
Sbjct: 389 VDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLND 448

Query: 554 GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTD 613
           G  V+LSNIYA+  RW+DV  +RK M++RG+ K    S I +   VY F+  D +H QT+
Sbjct: 449 GYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTE 508

Query: 614 QIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCI 673
           +I++   +++  +K  GYVP+    L+D+E+++K + +  HSEKLA+ +GLI +   + I
Sbjct: 509 EIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVI 568

Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           RI+KNLRVCEDCH  +K++S V  REIV+RDR RFH +K+G CSC DYW
Sbjct: 569 RIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 216/456 (47%), Gaps = 73/456 (16%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P++  + + +S   +KQ HA +LK        NS L  L L+  +      SS  YA  I
Sbjct: 17  PSTHLLHNFTSPFELKQLHAHLLK-------TNSPLSSLPLSRVASVCAFNSSFSYAKLI 69

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F  + A      N  +R+ +    P  A+ +F ++    ++ D ++   +LKA +R   +
Sbjct: 70  FQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDV 129

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV----- 188
             G  VHG   KLG  S+ F+Q  +V +Y  CG+I  AR +FDKM  RD++ W++     
Sbjct: 130 RNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARL 189

Query: 189 --------------------------MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
                                     MI GY Q G   E ++LF EM+ + + P+E+ + 
Sbjct: 190 VKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVV 249

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            +L AC+  GNL  G  +H+F   +    +  + +TLI MY  CGC++ A  +FD +  +
Sbjct: 250 AVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEER 309

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
            +V  +AM++G +  G+ ED                               AL LFN+M 
Sbjct: 310 TVVSWSAMIAGLAAHGRAED-------------------------------ALALFNKMI 338

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGS 400
             G+KP+ VT + ++ AC+H+G++++ ++    + ++ +G   R+ +   ++D++++ G 
Sbjct: 339 NTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRD-YGIVPRIEHYGCMVDLFSRAGL 397

Query: 401 LESAREVFERMR-RRNVISWTSMINAFAIHGDARNA 435
           L+ A E    M    N + W +++    +H + + A
Sbjct: 398 LQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLA 433


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 267/698 (38%), Positives = 405/698 (58%), Gaps = 43/698 (6%)

Query: 27  HMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSN 86
           H+ Q + Q++ +S  H        + L+  F         + YA   F ++  P   + N
Sbjct: 2   HLDQVYVQLI-VSGLHKC------RFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWN 54

Query: 87  KFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA--RAEGLLEGMQVHGLGT 144
             I+  +  +     +++++ M    +  + F+F  +LKA      EG+  G Q+HG   
Sbjct: 55  AIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGI--GKQIHGQTF 112

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           K GFGS+ FVQ  LV MY   G+I  AR++FDK+  R +V W+ +I GY QNG   E LN
Sbjct: 113 KYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALN 172

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           +F+EM+  NV+PD + L  +++A +   +L  G+++H  +    +  +  +  +L TMYA
Sbjct: 173 VFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYA 232

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
                                          + G VE AR  F++M + +LI W+AMISG
Sbjct: 233 -------------------------------KRGLVEVARFFFNRMEKPNLILWNAMISG 261

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           YA N + +EA+KLF EM    ++ D +TM S + A A +G L+ A+ +  YI K+ +  D
Sbjct: 262 YANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDD 321

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
             VN  +IDMYAKCGS+  AR VF+R+  ++V+ W+ MI  + +HG  + A+  +N+MK 
Sbjct: 322 TFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQ 381

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
             + PN  TFIG+L AC ++GLV EG E+F  M  ++ I P ++HY C+VDL GRA  L 
Sbjct: 382 AGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLN 440

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
           +A + + +MP  P V +WG+L++AC++H ++ L E AA+QL  LDP + G  V LSN+YA
Sbjct: 441 QAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYA 500

Query: 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVIS 624
               W  V  +R  M ++G+ K+   S IE+N  +  F   DRSH ++ +I+E+L+ +  
Sbjct: 501 SAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEK 560

Query: 625 ELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCED 684
            LK AGYVP + S L DL  EE  E +  HSE+LA+ YG+IS+   + +RI KNLR C +
Sbjct: 561 RLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACIN 620

Query: 685 CHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           CH+ IKL+SK+  REI+IRD  RFHH+KDGVCSC D+W
Sbjct: 621 CHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 261/631 (41%), Positives = 375/631 (59%), Gaps = 40/631 (6%)

Query: 101  ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
            AL+ F  +   GL   R SFP  +K+ +    L+ G   H      GF +D FV + L+ 
Sbjct: 1126 ALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALID 1185

Query: 161  MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLF-----EEMKM---S 212
            MY  CG++ DAR +FD++  R++V W+ MI GY QN   D  L LF     EE ++   +
Sbjct: 1186 MYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGN 1245

Query: 213  NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
            NV  D +V+  +LSACSR       E VH F++         + +TL+  YA CG     
Sbjct: 1246 NVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCG----- 1300

Query: 273  KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
                                      Q   ++ +FD M EKD I W++MI+ YA++    
Sbjct: 1301 --------------------------QPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 1334

Query: 333  EALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
            EAL++F+ M +  G++ + VT+ +V+ ACAH G L   + IH  + K     ++ V  +I
Sbjct: 1335 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSI 1394

Query: 392  IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
            IDMY KCG +E A++ F+RM+ +NV SWT+M+  + +HG A+ AL  F KM    + PN 
Sbjct: 1395 IDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNY 1454

Query: 452  VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
            +TF+ VL ACSHAGLV+EG   F +M ++Y+I P  EHYGCMVDLFGRA  L EA  L++
Sbjct: 1455 ITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIK 1514

Query: 512  TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
             M   P+ V+WGSL+ ACR+H  ++L E AA++L +LDPD+ G  VLLSN+YA   RW D
Sbjct: 1515 RMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWAD 1574

Query: 572  VGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY 631
            V  +R  MK R ++K    S +E+   V+ FL  D+ H   + IY+ L ++  EL+  GY
Sbjct: 1575 VERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGY 1634

Query: 632  VPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKL 691
            VP++ S L D+++EEK  ++  HSEKLA+ +G+++S   + I I+KNLRVC DCH  IKL
Sbjct: 1635 VPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKL 1694

Query: 692  VSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            +SK+  R+ V+RD  RFHH+KDGVCSC DYW
Sbjct: 1695 ISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 214/371 (57%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           Q+H    + G  +D  +   L+ +Y   G+I  A L+F ++       W+++I     NG
Sbjct: 45  QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
           L ++ L L++ M    +  D+     ++ AC+   ++  G+ VH  +I    + D  +Q+
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQN 164

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
            LI  Y  CG    A  +F+K+ ++N+V  T ++SG    G +++AR IFD++  K+++ 
Sbjct: 165 NLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVS 224

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W+AMI+GY  N  P+EAL+LF  MQ   + P++ TM+S+I AC  +G+L   + IH Y  
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAI 284

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           KN     + +  A+IDMY+KCGS++ A EVFE M R+++ +W SMI +  +HG  + AL 
Sbjct: 285 KNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALN 344

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F++M+  ++ P+ +TFIGVL AC H   V EG   F  MT  Y I P  EHY CM +L+
Sbjct: 345 LFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELY 404

Query: 498 GRANLLREALE 508
            R+N L EA +
Sbjct: 405 ARSNNLDEAFK 415



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 182/376 (48%), Gaps = 69/376 (18%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           + +C +  H++Q HA+I++   S  S + LL + L+  +S    T   + YA+ +F QI 
Sbjct: 34  LQNCKNFKHLRQIHAKIIR---SGLSNDQLLTRKLIHLYS----THGRIAYAILLFYQIQ 86

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P +   N  IRA + +   + AL ++  M+ +G+  D+F+FP ++KA      +  G  
Sbjct: 87  NPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKV 146

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYG-------------------------------ACGK 167
           VHG   K GF  D FVQ  L+  Y                                +CG 
Sbjct: 147 VHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
           + +AR +FD++  +++V W+ MI+GY +N   +E L LF+ M+  N+ P+E  +  ++ A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           C+  G L+ G  +H++ I N + +  +L + LI MY+ C                     
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKC--------------------- 305

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
                     G ++DA  +F+ M  K L  W++MI+    +   QEAL LF+EM+   +K
Sbjct: 306 ----------GSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVK 355

Query: 348 PDKVTMLSVISACAHL 363
           PD +T + V+ AC H+
Sbjct: 356 PDAITFIGVLCACVHI 371



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 157/328 (47%), Gaps = 47/328 (14%)

Query: 265 NCGCMDMAKGLFDKVLLKNL----VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
           NC      + +  K++   L    +++  ++  YS  G++  A L+F Q+       W+ 
Sbjct: 36  NCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNL 95

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           +I     N   ++AL L+  M   G+  DK T   VI AC +   +D  + +H  + K  
Sbjct: 96  IIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYG 155

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF-------------- 426
           F GD+ V N +ID Y KCG    A +VFE+MR RNV+SWT++I+                
Sbjct: 156 FSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFD 215

Query: 427 ------------AIHGDARN-----ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
                        I+G  RN     AL  F +M+ E+I PN  T + ++ AC+  G++  
Sbjct: 216 EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTL 275

Query: 470 GREIFASMTNEYNIPPKYE---HYG-CMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
           GR I     ++Y I    E   + G  ++D++ +   +++A+E+ ETMP   ++  W S+
Sbjct: 276 GRGI-----HDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP-RKSLPTWNSM 329

Query: 526 MAACRVH--GEIELAEFAAKQLLQLDPD 551
           + +  VH  G+  L  F+  + + + PD
Sbjct: 330 ITSLGVHGLGQEALNLFSEMERVNVKPD 357



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 149/327 (45%), Gaps = 54/327 (16%)

Query: 307  FDQMVEKDLI-CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
            F + V+K  +  W+++I+  A      EAL+ F+ ++  G+ P + +    I +C+ L  
Sbjct: 1098 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 1157

Query: 366  LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
            L   +  H       F  DL V++A+IDMY+KCG L+ AR +F+ +  RNV+SWTSMI  
Sbjct: 1158 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 1217

Query: 426  FAIHGDARNALIFFNKMKDE--------SIDPNGVTFIGVLYACS-----------HAGL 466
            +  +  A NAL+ F    +E        ++  + V  + VL ACS           H  +
Sbjct: 1218 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFV 1277

Query: 467  VDEG------------------------REIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
            V +G                        +++F  M  + +I      +  M+ ++ ++ L
Sbjct: 1278 VKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDI-----SWNSMIAVYAQSGL 1332

Query: 503  LREALE----LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL-V 557
              EALE    +V  +    N V   +++ AC   G +   +    Q++++D +++  +  
Sbjct: 1333 SGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGT 1392

Query: 558  LLSNIYAKDKRWQDVGELRKSMKERGI 584
             + ++Y K  R +   +    MKE+ +
Sbjct: 1393 SIIDMYCKCGRVEMAKKTFDRMKEKNV 1419



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 102/217 (47%), Gaps = 7/217 (3%)

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           ++IH  I ++    D  +   +I +Y+  G +  A  +F +++     +W  +I A  I+
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G +  AL+ +  M  + I  +  TF  V+ AC++   +D G+ +  S+  +Y        
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLI-KYGFSGDVFV 162

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
              ++D + +    R AL++ E M    NVV W ++++     G+++     A+++    
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGLISCGDLQ----EARRIFDEI 217

Query: 550 PDHD-GALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585
           P  +  +   + N Y ++++ ++  EL K M+   I 
Sbjct: 218 PSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIF 254


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 260/669 (38%), Positives = 383/669 (57%), Gaps = 48/669 (7%)

Query: 65  SSLYYALS-------IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTID 116
           + LY+ LS       +F  +P+P + + N  +  +  S     AL+ F++M++ G +  D
Sbjct: 156 AKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPGSE----ALEAFVRMVDAGRVRPD 211

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
             +    L+A A A  +  G  VHG G K G      V TGL+ +Y  CG +  A+ +FD
Sbjct: 212 STTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFD 271

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
           +M   D+V ++ +I GY  NG+ +  + LF+E+  S   P+   L  ++   S  G+   
Sbjct: 272 RMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELL 331

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
              +H F++   +  DA                               +VSTA+ + Y R
Sbjct: 332 ARCLHAFVVKARLDADA-------------------------------LVSTALTTLYCR 360

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
              +E AR IFD M+EK +  W+AMISGYA+N   + A+ LF  MQ   ++P+ +T+ S 
Sbjct: 361 LNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISST 420

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           +SACAHLG L   + +H  I K     ++ V  A+IDMYAKCGS+  AR +F+RM  +NV
Sbjct: 421 LSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNV 480

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           +SW +MI+ + +HG    AL  +  M D  I P   TF+ V+YACSH GLVDEG+++F  
Sbjct: 481 VSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRV 540

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP---FAPNVVIWGSLMAACRVHG 533
           MTNEY I P  EH  CMVDL GRA  L EALEL+   P     P V  WG+L+ AC VH 
Sbjct: 541 MTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGV--WGALLGACMVHK 598

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
             +LA+ A+++L +LD ++ G  VLLSN+Y   K + +   +R+  K R ++K   C+ I
Sbjct: 599 NSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLI 658

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW 653
           E+ +  + F+  D  H Q++ IY  L  + +++  AGY P   +AL D+E+EEK  ++  
Sbjct: 659 EIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKV 718

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HSEKLA+ +GL+S++  + IRI+KNLRVC DCHN  K +SKV  R IV+RD +RFHH++D
Sbjct: 719 HSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRD 778

Query: 714 GVCSCKDYW 722
           GVCSC DYW
Sbjct: 779 GVCSCGDYW 787


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/717 (37%), Positives = 400/717 (55%), Gaps = 38/717 (5%)

Query: 6    QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
            +P +   L   +A ++ S+ +  K  H  IL+   S    N  L   L+  +        
Sbjct: 483  KPGRVTFLHLLSACTNSSAYSDGKMIHEDILR---SGIKSNGHLANALMNMYR----RCG 535

Query: 66   SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
            S+  A ++F    A      N  I   +     + A K+FL+M  EGL  D+ +F  +L 
Sbjct: 536  SIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLV 595

Query: 126  AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
                 E L  G Q+H L  + G   D  +   L+ MY  CG + DA  +F  + +R+++ 
Sbjct: 596  GCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMS 655

Query: 186  WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
            W+ MI G+   G   +   LF +M+    +P +   S IL AC  +  L  G+ V   I+
Sbjct: 656  WTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHIL 715

Query: 246  DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
            ++   LD                                 V  A++S YS++G + DAR 
Sbjct: 716  NSGYELDTG-------------------------------VGNALISAYSKSGSMTDARK 744

Query: 306  IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
            +FD+M  +D++ W+ MI+GYA+N     AL+   +MQ  G+  +K + +S+++AC+    
Sbjct: 745  VFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSA 804

Query: 366  LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
            L++ +R+H  I K    GD+RV  A+I MYAKCGSLE A+EVF+    +NV++W +MINA
Sbjct: 805  LEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINA 864

Query: 426  FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
            +A HG A  AL FFN M  E I P+G TF  +L AC+H+GLV EG  IF+S+ +++ + P
Sbjct: 865  YAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSP 924

Query: 486  KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
              EHYGC+V L GRA   +EA  L+  MPF P+  +W +L+ ACR+HG + LAE AA   
Sbjct: 925  TIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNA 984

Query: 546  LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
            L+L+  +    VLLSN+YA   RW DV ++R+ M+ RGI KE   S IE++N ++EF+ A
Sbjct: 985  LKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAA 1044

Query: 606  DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
            DRSH +T +IYE+L  +  E++ AGY PD    L +L+ E +   +  HSE+LA+ YGL+
Sbjct: 1045 DRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLL 1104

Query: 666  SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             +   + IRI KNLR+C DCH   K +SK+  REI+ RD  RFH +K+G CSC+D+W
Sbjct: 1105 KTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  231 bits (590), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 141/522 (27%), Positives = 250/522 (47%), Gaps = 42/522 (8%)

Query: 13  LPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQ-NSLLLKLLLTSFSLPTTTPSSLYYAL 71
           L    A S+  +L   +  H+ I ++ HS   Q  + L+ +      LP         A 
Sbjct: 389 LSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPR--------AR 440

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
            +F+ +P       N  I   +       A+K++ +M +EG+   R +F  +L A   + 
Sbjct: 441 ELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSS 500

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
              +G  +H    + G  S+  +   L+ MY  CG I++A+ +F+    RDI+ W+ MI 
Sbjct: 501 AYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIA 560

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           G+ Q+G ++    LF EMK   +EPD++  + +L  C     L  G  +H  II++ + L
Sbjct: 561 GHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQL 620

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           D +L + LI MY  CG +                               +DA  +F  + 
Sbjct: 621 DVNLGNALINMYIRCGSL-------------------------------QDAYEVFHSLR 649

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
            ++++ W+AMI G+A+    ++A +LF +MQ  G KP K T  S++ AC     LD+ ++
Sbjct: 650 HRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKK 709

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           +  +I  + +  D  V NA+I  Y+K GS+  AR+VF++M  R+++SW  MI  +A +G 
Sbjct: 710 VIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGL 769

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
              AL F  +M+++ +  N  +F+ +L ACS    ++EG+ + A +     +        
Sbjct: 770 GGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKR-KMQGDVRVGA 828

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            ++ ++ +   L EA E+ +      NVV W +++ A   HG
Sbjct: 829 ALISMYAKCGSLEEAQEVFDNFT-EKNVVTWNAMINAYAQHG 869



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 238/451 (52%), Gaps = 35/451 (7%)

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
           V N  I A++     + A + + +M ++G+ ++R ++  +L A + ++ L  G  +H   
Sbjct: 352 VYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHI 411

Query: 144 TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
           +++G  SD  +   L+ MY  CG +  AR +F+ M  RD++ W+ +I GY +     E +
Sbjct: 412 SEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAM 471

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            L+++M+   V+P  +    +LSAC+ +   S G+ +HE I+ + +  + HL + L+ MY
Sbjct: 472 KLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMY 531

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
             CG +  A+ +F+    ++++   +M++G+++ G  E                      
Sbjct: 532 RRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYE---------------------- 569

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
                     A KLF EM+  G++PDK+T  SV+  C +   L+  ++IH+ I ++    
Sbjct: 570 ---------AAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQL 620

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
           D+ + NA+I+MY +CGSL+ A EVF  +R RNV+SWT+MI  FA  G+ R A   F +M+
Sbjct: 621 DVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQ 680

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE-YNIPPKYEHYGCMVDLFGRANL 502
           ++   P   TF  +L AC  +  +DEG+++ A + N  Y +     +   ++  + ++  
Sbjct: 681 NDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN--ALISAYSKSGS 738

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHG 533
           + +A ++ + MP   +++ W  ++A    +G
Sbjct: 739 MTDARKVFDKMP-NRDIMSWNKMIAGYAQNG 768



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 146/530 (27%), Positives = 253/530 (47%), Gaps = 44/530 (8%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSH--HSQNSLLLKLLLTSFSLPTTTP 64
           P+K   +   TA  S + L + K+ H++I++  +      QNSLL  +      LP+   
Sbjct: 181 PSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLL-NMYGKCEDLPS--- 236

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
                A  +FS I        N  +   +     +  + +F +M +EG+  D+ ++  +L
Sbjct: 237 -----ARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLL 291

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            A      L EG ++H L    G  SD  V T L  M+  CG +  A+   +  + RD+V
Sbjct: 292 DAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVV 351

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            ++ +I    Q+G ++E    + +M+   V  +      +L+ACS +  L  GE +H  I
Sbjct: 352 VYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHI 411

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
            +   + D  + ++LI+MYA C                               G +  AR
Sbjct: 412 SEVGHSSDVQIGNSLISMYARC-------------------------------GDLPRAR 440

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            +F+ M ++DLI W+A+I+GYA      EA+KL+ +MQ  G+KP +VT L ++SAC +  
Sbjct: 441 ELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSS 500

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
                + IH  I ++    +  + NA+++MY +CGS+  A+ VFE  R R++ISW SMI 
Sbjct: 501 AYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIA 560

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
             A HG    A   F +MK E ++P+ +TF  VL  C +   ++ GR+I   +  E  + 
Sbjct: 561 GHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHM-LIIESGLQ 619

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
                   +++++ R   L++A E+  ++    NV+ W +++      GE
Sbjct: 620 LDVNLGNALINMYIRCGSLQDAYEVFHSLRHR-NVMSWTAMIGGFADQGE 668



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 139/558 (24%), Positives = 257/558 (46%), Gaps = 50/558 (8%)

Query: 4   LSQPTKPLTLPTSTA-----ISSCS---SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLT 55
           LS   +P    T+ A     + +C+   SL   K+ HAQ+++          + L  LL 
Sbjct: 69  LSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVG----PDIFLSNLLI 124

Query: 56  SFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI 115
           +  +   + S    A  +F ++P       N  I   +     K A ++F +M   G   
Sbjct: 125 NMYVKCRSVSD---AHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIP 181

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
            + ++  IL A      L  G ++H    + G+  DP VQ  L+ MYG C  +  AR +F
Sbjct: 182 SKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVF 241

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
             +  RD+V ++ M+  Y Q    +E + LF +M    + PD++    +L A +    L 
Sbjct: 242 SGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLD 301

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G+ +H+  ++  +  D  + + L TM+  C                             
Sbjct: 302 EGKRIHKLAVNEGLNSDIRVGTALATMFVRC----------------------------- 332

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
             G V  A+   +   ++D++ ++A+I+  A++ H +EA + + +M+  G+  ++ T LS
Sbjct: 333 --GDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLS 390

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           V++AC+    L   + IH +I +     D+++ N++I MYA+CG L  ARE+F  M +R+
Sbjct: 391 VLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRD 450

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           +ISW ++I  +A   D   A+  + +M+ E + P  VTF+ +L AC+++    +G+ I  
Sbjct: 451 LISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHE 510

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
            +     I         +++++ R   + EA  + E    A +++ W S++A    HG  
Sbjct: 511 DILRS-GIKSNGHLANALMNMYRRCGSIMEAQNVFEGTR-ARDIISWNSMIAGHAQHGSY 568

Query: 536 ELAE--FAAKQLLQLDPD 551
           E A   F   +   L+PD
Sbjct: 569 EAAYKLFLEMKKEGLEPD 586



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 145/561 (25%), Positives = 244/561 (43%), Gaps = 62/561 (11%)

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           +R ++  +++   R   L E  ++H    + G G D F+   L+ MY  C  + DA  +F
Sbjct: 81  NRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVF 140

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
            KM  RD++ W+ +I  Y Q G   +   LFEEM+ +   P ++    IL+AC     L 
Sbjct: 141 LKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELE 200

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
           YG+ +H  II+     D  +Q++L+ MY  C  +  A+ +F  +  +++V    M+  Y+
Sbjct: 201 YGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYA 260

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           +   VE                               E + LF +M   G+ PDKVT ++
Sbjct: 261 QKAYVE-------------------------------ECIGLFGQMSSEGIPPDKVTYIN 289

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           ++ A     +LD+ +RIH          D+RV  A+  M+ +CG +  A++  E    R+
Sbjct: 290 LLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRD 349

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V+ + ++I A A HG    A   + +M+ + +  N  T++ VL ACS +  +  G E+  
Sbjct: 350 VVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAG-ELIH 408

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA--ACRVHG 533
           S  +E       +    ++ ++ R   L  A EL  TMP   +++ W +++A  A R   
Sbjct: 409 SHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLISWNAIIAGYARREDR 467

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLL-----SNIYAKDKR-WQDVGELRKSMKERGILKE 587
              +  +   Q   + P     L LL     S+ Y+  K   +D+  LR  +K  G L  
Sbjct: 468 GEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDI--LRSGIKSNGHLAN 525

Query: 588 ------RACSRIEMNNEVYEFLTAD---------RSHKQTDQIYEKLNEVISELKPAGYV 632
                 R C  I     V+E   A            H Q    YE   ++  E+K  G  
Sbjct: 526 ALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGS-YEAAYKLFLEMKKEGLE 584

Query: 633 PD---IHSALVDLEDEEKREV 650
           PD     S LV  ++ E  E+
Sbjct: 585 PDKITFASVLVGCKNPEALEL 605



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 176/371 (47%), Gaps = 41/371 (11%)

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           ++V   VM D   +    +++ N ++       E +      ++  C+R  +L+  + +H
Sbjct: 49  NLVSVKVMRDEQHRGSEREDLSNAYQPRP---TETNRAAYVDLVQNCTRKRSLAEAKRIH 105

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
             +++  V  D  L + LI MY  C                                 V 
Sbjct: 106 AQMVEAGVGPDIFLSNLLINMYVKCR-------------------------------SVS 134

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
           DA  +F +M  +D+I W+++IS YA+    ++A +LF EMQ  G  P K+T +S+++AC 
Sbjct: 135 DAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACC 194

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
               L+  ++IH  I +  +  D RV N++++MY KC  L SAR+VF  + RR+V+S+ +
Sbjct: 195 SPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNT 254

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           M+  +A        +  F +M  E I P+ VT+I +L A +   ++DEG+ I     NE 
Sbjct: 255 MLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNE- 313

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP-NVVIWGSLMAACRVHGEIELAEF 540
            +         +  +F R   +  A + +E   FA  +VV++ +L+AA   HG  E    
Sbjct: 314 GLNSDIRVGTALATMFVRCGDVAGAKQALEA--FADRDVVVYNALIAALAQHGHYEE--- 368

Query: 541 AAKQLLQLDPD 551
           A +Q  Q+  D
Sbjct: 369 AFEQYYQMRSD 379


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 256/712 (35%), Positives = 413/712 (58%), Gaps = 14/712 (1%)

Query: 17  TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
           + + +CSSL   ++ H ++    +S       L   L+T ++       S+  A  +F  
Sbjct: 115 SVLGACSSLAQGREIHNRVF---YSGLDSFQSLANALVTMYA----RFGSVGDAKRMFQS 167

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
           +        N  I A S S     AL++F +M  + +  +  ++  ++   +  E L EG
Sbjct: 168 LQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEG 226

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
            ++H      GF SD  V T L+ MYG CG   +AR +FDKM  RD+V W+VMI  Y QN
Sbjct: 227 RKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQN 286

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           G F E L L++++ M   +  +     IL ACS    L+ G  VH  I++  +  +  + 
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVA 346

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL---IFDQMVEK 313
           + L+ MYA CG ++ A+ +F+ +  ++ V  + ++  Y+  G  +DAR    +FD++  +
Sbjct: 347 TALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSR 406

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQ-VCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           D ICW+AMI+ Y +N     A+K+F EM    G+KPD VT ++V+ ACA LG L + + +
Sbjct: 407 DTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKAL 466

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H  I ++    ++ V N +I+MYA+CGSLE A  +F   + + V+SWT+M+ AF+ +G  
Sbjct: 467 HAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRY 526

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
             AL  F +M  E + P+ VT+  +L+ C+H G +++G   F  M   + + P  +H+  
Sbjct: 527 AEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAA 586

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           MVDL GR+  L +A EL+E+MPF P+ V W + + ACR+HG++EL E AA+++ +LDP  
Sbjct: 587 MVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSS 646

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
               + +SNIYA    W+ V  +RK M+ERG+ K    S IE++ +++EF +  + H +T
Sbjct: 647 TAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRT 706

Query: 613 DQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS- 671
           D+I E+L  +   ++ AGYVPD  + L D+ + EK  ++L+HSEK+A+ +GL+SS+    
Sbjct: 707 DEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGE 766

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHY-KDGVCSCKDYW 722
            IR+VKNLRVC DCH   K ++++  R+I++RD  RFH +  DG CSC DYW
Sbjct: 767 PIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  198 bits (504), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 175/703 (24%), Positives = 295/703 (41%), Gaps = 131/703 (18%)

Query: 9   KPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY 68
           +P  +   T + SCSS   + +  A   ++  S   +++++   L++ +        SL 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYG----KCDSLV 59

Query: 69  YALSIFSQIPAPPSRVS--NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
            A S+F  +      V   N  I A + +     AL ++ +M  +GL  D  +F  +L A
Sbjct: 60  DARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGA 119

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            +    L +G ++H      G  S   +   LV MY   G + DA+ MF  +  RD   W
Sbjct: 120 CS---SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSW 176

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +I  + Q+G +   L +F+EMK  +++P+      ++S  S    L  G  +H  I+ 
Sbjct: 177 NAVILAHSQSGDWSGALRIFKEMK-CDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVA 235

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
           N    D  + + LI MY  CG    A+ +FDK                            
Sbjct: 236 NGFDSDLVVATALINMYGKCGSSHEAREVFDK---------------------------- 267

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
              M ++D++ W+ MI  Y +N    EAL+L+ ++ + G K  K T +S++ AC+ +  L
Sbjct: 268 ---MKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKAL 324

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
            Q + +H +I +     ++ V  A+++MYAKCGSLE AR+VF  M+ R+ ++W+++I A+
Sbjct: 325 AQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAY 384

Query: 427 AIHG---DARNALIFFNKMKDE--------------------------------SIDPNG 451
           A +G   DAR A   F+++                                    + P+ 
Sbjct: 385 ASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDA 444

Query: 452 VTFIGVLYACSHAGLVDEGREIFA---------------SMTNEYNIPPKYEH------- 489
           VTFI VL AC+  G + E + + A               ++ N Y      E        
Sbjct: 445 VTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAA 504

Query: 490 --------YGCMVDLFGRANLLREALELVETMPF---APNVVIWGSLMAACRVHGEIE-- 536
                   +  MV  F +     EAL+L + M      P+ V + S++  C   G +E  
Sbjct: 505 AKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQG 564

Query: 537 ---LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
                + A    L    DH  A+V   ++  +  R  D  EL +SM              
Sbjct: 565 WRYFTDMAELHGLAPTADHFAAMV---DLLGRSGRLFDAKELLESMP------------F 609

Query: 594 EMNNEVY-EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
           E +   +  FLTA R H +  ++ E   E + EL P+   P I
Sbjct: 610 EPDPVAWMTFLTACRIHGKL-ELGEAAAERVYELDPSSTAPYI 651


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 267/692 (38%), Positives = 405/692 (58%), Gaps = 47/692 (6%)

Query: 47  SLLLKLLLTSFSL-----PTTTPSSLYYALSIFSQIPAPPSRVS-NKFIRAISWSHRPKH 100
           ++ L+LL  SF +      TT  ++     ++F++        S N  I  ++       
Sbjct: 6   TISLQLLTISFKIHKNHFSTTAAATNTNLTTLFNKYFDRTDVYSWNSLIAELARGGDSCE 65

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           +L+ F  M    +  +R +FP  +K+ +    L  G Q H      GF SD FV + L+ 
Sbjct: 66  SLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALID 125

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP---- 216
           MY  CGK+ +AR++FD++  R+IV W+ +I GY QN    E L +F+E      E     
Sbjct: 126 MYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEE 185

Query: 217 -----DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
                D + +  +LSACSR  N +  E VH   I   V LD                   
Sbjct: 186 VGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAI--KVGLD------------------- 224

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
                     K + V   ++  Y++ G+V  +R +FD M EKD++ W++MI+ YA+N   
Sbjct: 225 ----------KVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLS 274

Query: 332 QEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
            +A ++F+ M +  G K ++VT+ +++ ACAH G L     +H  + K  +  ++ +  +
Sbjct: 275 TDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATS 334

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           IIDMY KCG  E AR  F+ M+ +NV SWT+MI  + +HG AR AL  F +M    + PN
Sbjct: 335 IIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPN 394

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
            +TFI VL ACSHAG ++EG   F +M++EYN+ P  EHYGCMVDL GRA  ++EA  L+
Sbjct: 395 YITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLI 454

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
           ++M    + V+WGSL+AACR+H ++ELAE +A++L +LDP + G  VLL+NIYA   RW+
Sbjct: 455 KSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWK 514

Query: 571 DVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAG 630
           DV  +R  +K+RG++K    S +E+   V+ FL  D+ H Q ++IY+ L E+  +L+ AG
Sbjct: 515 DVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAG 574

Query: 631 YVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIK 690
           YVP++ S L D+++EEK  ++  HSEKLA+ +G+++S   S I ++KNLRVC DCH  IK
Sbjct: 575 YVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIK 634

Query: 691 LVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           L+SK+ +REI++RD  RFHH+KDG+CSC DYW
Sbjct: 635 LISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 253/660 (38%), Positives = 388/660 (58%), Gaps = 35/660 (5%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L  A  +F ++P   +      I  +        A+ +FL M+  G   DRF+   ++ A
Sbjct: 221 LVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISA 280

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC---GKILDARLMFDKMSYRDI 183
            A  E LL G Q+H    + G   D  V   L+ MY  C   G +  AR +FD++   ++
Sbjct: 281 CANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNV 340

Query: 184 VPWSVMIDGYFQNGLFDE-VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
             W+ MI GY Q G +DE  L+LF  M +++V P+    S  L AC+    L  GE V  
Sbjct: 341 FSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFT 400

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
             +    +              NC                   V+ +++S Y+R+G+++D
Sbjct: 401 HAVKLGFS------------SVNC-------------------VANSLISMYARSGRIDD 429

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           AR  FD + EK+LI ++ +I  YA+N + +EAL+LFNE++  GM     T  S++S  A 
Sbjct: 430 ARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAAS 489

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           +G + + ++IH  + K+    +  V NA+I MY++CG++ESA +VFE M  RNVISWTS+
Sbjct: 490 IGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSI 549

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I  FA HG A  AL  F+KM +E + PN VT+I VL ACSH GLV+EG + F SM  E+ 
Sbjct: 550 ITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHG 609

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           + P+ EHY C+VD+ GR+  L EA++ + +MP+  + ++W + + ACRVHG +EL + AA
Sbjct: 610 VIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAA 669

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           K +++ +P    A +LLSN+YA   +W +V  +RK+MKE+ ++KE  CS +E+ N+V++F
Sbjct: 670 KMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKF 729

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
              D SH +  +IY++L  +  ++K  GYVP++   L D+E+E+K +++  HSEK+A+ +
Sbjct: 730 YVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAF 789

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           GLIS+ K   IR+ KNLR+C DCH+ IK +S    REI++RD  RFHH KDG CSC +YW
Sbjct: 790 GLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 124/282 (43%), Gaps = 34/282 (12%)

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
            NG   + ++  E M      PD    S  L  C R  +   G  VHE +  +++ LD+ 
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM-VEK 313
             ++LI++Y+ C                               GQ E A  IF  M   +
Sbjct: 103 TLNSLISLYSKC-------------------------------GQWEKATSIFRLMGSSR 131

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
           DLI WSAM+S +A NN    AL  F +M   G  P++    +   AC+    +     I 
Sbjct: 132 DLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIF 191

Query: 374 LYIDKNAF-GGDLRVNNAIIDMYAKC-GSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
            ++ K  +   D+ V   +IDM+ K  G L SA +VFE+M  RN ++WT MI      G 
Sbjct: 192 GFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGY 251

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           A  A+  F  M     +P+  T  GV+ AC++  L+  G+++
Sbjct: 252 AGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQL 293


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 234/523 (44%), Positives = 341/523 (65%), Gaps = 1/523 (0%)

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
           E L L+  M  S ++PD M    ++ AC+ +    +G  VH  ++ +    D+++ S+LI
Sbjct: 149 EALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLI 208

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
            +YAN   +  AK LF+    +++V   AM+ GY +  ++  AR++FD+MV +D+I W+ 
Sbjct: 209 HLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNT 268

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           MI+GYA    P EAL LF++M+  G+KP + T++S++SACAHLG LD+   +H YI+ N 
Sbjct: 269 MINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNR 328

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
              +  V  A++DMYAKCG +  A +VF  M  ++V++W ++I   AIHG+ + A   F 
Sbjct: 329 IEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFK 388

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500
           +MK+  ++PN +TF+ +L ACSHAG+VDEG+++   M++ Y I PK EHYGC++DL  RA
Sbjct: 389 EMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARA 448

Query: 501 NLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560
             L EA+EL+ TMP  PN    G+L+  CR+HG  EL E   K+L+ L P H G  +LLS
Sbjct: 449 GFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLS 508

Query: 561 NIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLN 620
           NIYA  K+W D  ++R  MK  GI K    S IE+   V+ F+  D SH ++++IYEKLN
Sbjct: 509 NIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLN 568

Query: 621 EVISELKPA-GYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNL 679
           E+ + LK A GY  D  + L+D+E+E+K   +  HSEKLA+ YGL+       IRIVKNL
Sbjct: 569 EIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNL 628

Query: 680 RVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           RVC DCH+ IKL+SKVY REI++RDR RFHH++DG CSC D+W
Sbjct: 629 RVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671



 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/469 (28%), Positives = 235/469 (50%), Gaps = 77/469 (16%)

Query: 2   STLSQPTKPLTLPTS-----TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTS 56
           S++S+   PLT P S     +  + C +L H+KQ HAQI+    +HH  NS      L S
Sbjct: 52  SSMSRTPNPLTNPPSNPQILSLFNPCKTLRHLKQVHAQII----THH--NSPFQLSALAS 105

Query: 57  FSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTID 116
            S  +  P+ L YA +IF  +  PP  + N  IRA+S S  P  AL ++  ML  GL  D
Sbjct: 106 LSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPD 165

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY------GACGKILD 170
             ++P ++KA   +     G+ VH    K GF  D ++ + L+ +Y      GA  ++ +
Sbjct: 166 HMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFN 225

Query: 171 -------------------------ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
                                    AR++FD+M  RD++ W+ MI+GY   G  +E L L
Sbjct: 226 LCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALAL 285

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           F++M+   V+P E  +  +LSAC+  G L  G  +H +I DN + +++ + + L+ MYA 
Sbjct: 286 FDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAK 345

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
           CG + +A  +F+ +  K+++    +++G +  G V++A+                     
Sbjct: 346 CGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQ--------------------- 384

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385
                     +LF EM+  G++P+ +T ++++SAC+H G++D+ Q++ L    +++G + 
Sbjct: 385 ----------QLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKL-LDCMSSSYGIEP 433

Query: 386 RVNN--AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGD 431
           +V +   +ID+ A+ G LE A E+   M    N  +  +++    IHG+
Sbjct: 434 KVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGN 482



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 35/291 (12%)

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           A+ IF  +       ++++I   + +  P EAL L++ M   G+KPD +T   VI AC  
Sbjct: 119 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 178

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW--- 419
             V      +H ++ K+ F  D  + +++I +YA    L +A+++F     R+V+SW   
Sbjct: 179 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 238

Query: 420 ----------------------------TSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
                                        +MIN +AI G    AL  F++M+   + P  
Sbjct: 239 IDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTE 298

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
            T + +L AC+H G +D+G  +  +  N+  I         +VD++ +   +  A ++  
Sbjct: 299 ATVVSLLSACAHLGALDKGLHLH-TYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFN 357

Query: 512 TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ--LDPDHDGALVLLS 560
            M  + +V+ W +++A   +HG ++ A+   K++ +  ++P+    + +LS
Sbjct: 358 AME-SKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILS 407


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/601 (43%), Positives = 364/601 (60%), Gaps = 2/601 (0%)

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA--CGKILDARLMFDKMSYR 181
           L  + R   + E  Q+HG   K G   D    + L+    +   G +  AR +FD++   
Sbjct: 22  LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRP 81

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           +   W+ MI GY  +   +E L L+  M   +V  +      +L ACS    L   + +H
Sbjct: 82  NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIH 141

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
             II      + +  ++L+ +Y+  G +  A+ LFD+V  ++ V   +M+ GY++ G++E
Sbjct: 142 AHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIE 201

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
            A  IF+ M E+++I W++MISG      P+EAL LF+ MQ  G+K D V ++S + ACA
Sbjct: 202 MAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACA 261

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
            LGVLDQ + IH YI K+    D  +   +IDMYAKCG LE A EVF +M  + V  WT+
Sbjct: 262 DLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTA 321

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI+ +AIHG  R AL +F KM+   ++PN +TF G+L ACSHAGLV E + +F SM   +
Sbjct: 322 MISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIH 381

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
              P  EHYGCMVDL GRA LL+EA EL+E MP  PN  IWG+L+ AC +HG +EL +  
Sbjct: 382 GFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQI 441

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
            K L+Q+DP H G  + L++I+A    W     +R+ MKE+G+ K   CS I +N   +E
Sbjct: 442 GKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHE 501

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           FL  D SH Q  +I   L +++  L+  GY P +   L+DLED+EK   I  HSEKLA+ 
Sbjct: 502 FLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVT 561

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           +GLIS+K    IRIVKNLRVCEDCH  IKL+SKVYAREI++RDRTRFH +KDG C+C DY
Sbjct: 562 FGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDY 621

Query: 722 W 722
           W
Sbjct: 622 W 622



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/469 (28%), Positives = 225/469 (47%), Gaps = 80/469 (17%)

Query: 4   LSQPTKPLTLPTSTA-----ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFS 58
           L  PT  L+  ++ A     +  CS++  ++Q H Q+LK          L+L  +  S  
Sbjct: 5   LCTPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLK--------TGLILDEIPASKL 56

Query: 59  LP---TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI 115
           L    +    SL YA ++F +I  P + + N  IR  S S  P+ AL ++  ML   +  
Sbjct: 57  LAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPH 116

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           + ++FP +LKA +    L E  Q+H    K+GFGS+ +    L+ +Y   G I  ARL+F
Sbjct: 117 NAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLF 176

Query: 176 DKMSYRDIVPWSVMIDGYFQNG-------LFD------------------------EVLN 204
           D++  RD V W+ MIDGY + G       +F+                        E LN
Sbjct: 177 DQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALN 236

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           LF  M+ + ++ D + L   L AC+  G L  G+ +H +I  + + +D  L   LI MYA
Sbjct: 237 LFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYA 296

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
            CG ++ A  +F K+  K + V TAM+SGY+  G+                         
Sbjct: 297 KCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGR------------------------- 331

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK-NAFGG 383
                  +EAL+ F +MQ  G++P+++T   +++AC+H G++ +A+ +   +++ + F  
Sbjct: 332 ------GREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKP 385

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD 431
            +     ++D+  + G L+ A E+ E M  + N   W +++NA  IHG+
Sbjct: 386 SIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN 434


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 259/708 (36%), Positives = 412/708 (58%), Gaps = 40/708 (5%)

Query: 55  TSFSLPT-----TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML 109
           T+FS  T          L  A  +F  IP   S      I   +   R + A+K+F+ M+
Sbjct: 40  TTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMV 99

Query: 110 NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL 169
            + +   +F+   +L + A       G +VH    KLG  +   V   L+ MY   G + 
Sbjct: 100 KDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLK 159

Query: 170 DARLMFDKM-------------------------------SYRDIVPWSVMIDGYFQNGL 198
            A+++FD+M                               S RDIV W+ MI G  Q+G 
Sbjct: 160 MAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGF 219

Query: 199 FDEVLNLFEE-MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
            +E L  F   +K ++++PD   L+  LSAC+    LS+G+ +H +I+         + +
Sbjct: 220 DNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGN 279

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNL--VVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            LI+MYA  G +++A+ + ++  + +L  +  TA+++GY + G +  AR IF+ + + D+
Sbjct: 280 ALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDV 339

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + W+AMI GY +N    +A+++F  M   G +P+  T+ +++SA + +  L+  ++IH  
Sbjct: 340 VAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHAS 399

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-RNVISWTSMINAFAIHGDARN 434
             ++       V NA+  MYAK GS+  AR+VF  +R+ R+ +SWTSMI A A HG    
Sbjct: 400 AIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEE 459

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           A+  F +M    I P+ +T++GVL AC+H GLV++GR  F  M N + I P   HY CMV
Sbjct: 460 AIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMV 519

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DLFGRA LL+EA + VE MP  P+V+ WGSL+++C+V+  ++LA+ AA++LL ++P++ G
Sbjct: 520 DLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSG 579

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
           A   L+N+Y+   +W D  ++RK MK RG+ KE+  S +++ N+ + F   D  H Q D+
Sbjct: 580 AYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDE 639

Query: 615 IYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIR 674
           IY+ ++++  E+K  G+ PD  S L DLE E K +++ +HSEKLA+ +G+IS+ +++ +R
Sbjct: 640 IYKMMDKIWKEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTLR 699

Query: 675 IVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           I+KNLRVC DCHN IK +SK+  REI++RD TRFHH+KDG CSCKDYW
Sbjct: 700 IMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 129/237 (54%), Gaps = 4/237 (1%)

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           +    +L + L+ +YA  G    A  LF+++ +K       ++SGY++ G++E A  +FD
Sbjct: 6   LTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFD 65

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
            +  +D + W+ +I GY +    ++A+K+F +M    + P + T+ +V+++CA  G    
Sbjct: 66  LIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGI 125

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            +++H ++ K      + V N++++MYAK G L+ A+ VF+RM+ RN  SW +MI+    
Sbjct: 126 GKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMN 185

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
            G    AL  F  + +  I    V++  ++  C+  G  +E  + F+S+  + ++ P
Sbjct: 186 CGRVDLALAQFELLSERDI----VSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKP 238


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 259/710 (36%), Positives = 412/710 (58%), Gaps = 40/710 (5%)

Query: 53  LLTSFSLPT-----TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLK 107
           L T+FS  T         +L  A  +F +IP P S      I   +     K A+  FL+
Sbjct: 76  LKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLR 135

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           M++ G++  +F+F  +L + A A+ L  G +VH    KLG      V   L+ MY  CG 
Sbjct: 136 MVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGD 195

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM------------------ 209
            + A+++FD+M  +D   W+ MI  + Q   FD  L LF++M                  
Sbjct: 196 SVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQ 255

Query: 210 --------------KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
                         K S+++PD+  L  +LSAC+   +L  G+ +H  I+  +V +   +
Sbjct: 256 GYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAV 315

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLK--NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
            + LI+MYA  G +++A  + +       N++  T+++ GY + G ++ AR IFD +  +
Sbjct: 316 GNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHR 375

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
           D++ W+AMI GYA+N    +AL LF  M   G KP+  T+ +V+S  + L  LD  +++H
Sbjct: 376 DVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLH 435

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDA 432
               +      + V NA+I MY++ GS++ AR++F  +   R+ ++WTSMI + A HG  
Sbjct: 436 AVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLG 495

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
             A+  F KM   ++ P+ +T++GVL AC+H GLV++G+  F  M N +NI P   HY C
Sbjct: 496 NEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYAC 555

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           M+DL GRA LL EA   +  MP  P+VV WGSL+++CRVH  ++LA+ AA++LL +DP++
Sbjct: 556 MIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNN 615

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
            GA + L+N  +   +W+D  ++RKSMK++ + KE+  S +++ N+V+ F   D  H Q 
Sbjct: 616 SGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQR 675

Query: 613 DQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSC 672
           D IY  ++++  E+K  G++PD +S L DLE E K +++  HSEKLA+ + LI++ K + 
Sbjct: 676 DAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTT 735

Query: 673 IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +RI+KNLRVC DCH+ I+ +S +  REI++RD TRFHH+KDG CSC+DYW
Sbjct: 736 VRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 215/469 (45%), Gaps = 72/469 (15%)

Query: 153 FVQTGLVGMYGACGKILDARLMFDKMSYR------------------------------- 181
           F+   L+ +Y   G   DA  +FD+M  +                               
Sbjct: 49  FLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQP 108

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           D V W+ MI GY   GLF   ++ F  M  S + P +   + +L++C+ A  L  G+ VH
Sbjct: 109 DSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVH 168

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
            F++    +    + ++L+ MYA CG   MAK +FD++ LK+      M+S + +  Q +
Sbjct: 169 SFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFD 228

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISAC 360
            A  +FDQM + D++ W+++I+GY    +   AL+ F+ M +   +KPDK T+ SV+SAC
Sbjct: 229 LALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSAC 288

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE------------------ 402
           A+   L   ++IH +I +        V NA+I MYAK G++E                  
Sbjct: 289 ANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIA 348

Query: 403 ---------------SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
                           AR +F+ ++ R+V++WT+MI  +A +G   +AL+ F  M  E  
Sbjct: 349 FTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGP 408

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            PN  T   VL   S    +D G+++ A       +         ++ ++ R+  +++A 
Sbjct: 409 KPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEV-SSVSVGNALITMYSRSGSIKDAR 467

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHG----EIELAEFAAKQLLQLDPDH 552
           ++   +    + + W S++ +   HG     IEL E   +  + L PDH
Sbjct: 468 KIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLR--INLKPDH 514



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 139/274 (50%), Gaps = 9/274 (3%)

Query: 237 GEAVHEFIIDNNVA-LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
           G  +H  II + +  L   L + L+ +Y   G    A  LFD++ LK       ++S ++
Sbjct: 31  GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           +AG ++ AR +FD++ + D + W+ MI GY      + A+  F  M   G+ P + T  +
Sbjct: 91  KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           V+++CA    LD  +++H ++ K    G + V N++++MYAKCG    A+ VF+RMR ++
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKD 210

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
             +W +MI+          AL  F++M     DP+ V++  ++    H G      E F+
Sbjct: 211 TSTWNTMISMHMQFCQFDLALALFDQMT----DPDIVSWNSIITGYCHQGYDIRALETFS 266

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
            M    ++ P     G +  L   AN  RE+L+L
Sbjct: 267 FMLKSSSLKPDKFTLGSV--LSACAN--RESLKL 296


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/739 (35%), Positives = 417/739 (56%), Gaps = 23/739 (3%)

Query: 7   PTKPLTLPTSTAISSCS-----SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           P   + L  +  IS C+     +L    +T   +LK     +    LL    +   SLPT
Sbjct: 35  PKFLIVLFVTKIISVCTKKKNNNLIVFAKTSFPVLKRFELSNGAEFLLSTEAMVPPSLPT 94

Query: 62  TTPSSLYYAL--------------SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLK 107
             PS L   L               +F  IP P     +  I A++       A+K++  
Sbjct: 95  NIPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSS 154

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           +   G+  D   F    KA A +   L   +VH   T+ G  SD FV   L+  YG C  
Sbjct: 155 LQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKC 214

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
           +  AR +FD +  RD+V W+ +   Y + G   + +++F EM  S V+P+ M +S IL A
Sbjct: 215 VEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPA 274

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           C+   +L  G+ +H F + + + ++  + S L+++YA C  +  A+ +FD +  +++V  
Sbjct: 275 CAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSW 334

Query: 288 TAMVSGYSRAGQVEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
             +++ Y +  + E    +F +M    V  D   W+A+I G  EN   +EA+++F +MQ 
Sbjct: 335 NGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQK 394

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
            G KP+++T+ S++ AC+    L   + IH Y+ ++   GDL    A++ MYAKCG L  
Sbjct: 395 MGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNL 454

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
           +R VF+ MRR++V++W +MI A A+HG+ + AL  F+KM    + PN VTF GVL  CSH
Sbjct: 455 SRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSH 514

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
           + LV+EG +IF SM  ++ + P   HY C+VD++ RA  L EA + ++ MP  P    WG
Sbjct: 515 SRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWG 574

Query: 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
           +L+AACRV+  +ELA+ +AK+L +++P++ G  V L NI    K W +  ++R  MKERG
Sbjct: 575 ALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERG 634

Query: 584 ILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLE 643
           I K   CS +++ N+V+ F+  D+S+ ++D+IY  L+E++ ++K AGY PD    L D++
Sbjct: 635 ITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDID 694

Query: 644 DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIR 703
            EEK E +  HSEKLA+ +G+++    S IR+ KNLR+C DCHN IK +SKV    IV+R
Sbjct: 695 QEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVR 754

Query: 704 DRTRFHHYKDGVCSCKDYW 722
           D  RFHH+K+G CSCKD W
Sbjct: 755 DSLRFHHFKNGNCSCKDLW 773


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/657 (38%), Positives = 382/657 (58%), Gaps = 35/657 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P          I   +     + A+ +FL M   G   DRF++  +L A   
Sbjct: 184 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 243

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC---GKILDARLMFDKMSYRDIVPW 186
              L  G Q+H    +LG   D  V   LV MY  C   G + D+R +F++M   +++ W
Sbjct: 244 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 303

Query: 187 SVMIDGYFQNGLFD-EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           + +I  Y Q+G  D E + LF +M   ++ P+    S +L AC    +   GE V+ + +
Sbjct: 304 TAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 363

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
              +A              NC                   V  +++S Y+R+G++EDAR 
Sbjct: 364 KLGIA------------SVNC-------------------VGNSLISMYARSGRMEDARK 392

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
            FD + EK+L+ ++A++ GYA+N   +EA  LFNE+   G+     T  S++S  A +G 
Sbjct: 393 AFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA 452

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           + + ++IH  + K  +  +  + NA+I MY++CG++E+A +VF  M  RNVISWTSMI  
Sbjct: 453 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 512

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
           FA HG A  AL  F+KM +    PN +T++ VL ACSH G++ EG++ F SM  E+ I P
Sbjct: 513 FAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 572

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
           + EHY CMVDL GR+ LL EA+E + +MP   + ++W +L+ ACRVHG  EL   AA+ +
Sbjct: 573 RMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 632

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
           L+ +PD   A +LLSN++A   +W+DV ++RKSMKER ++KE  CS IE+ N V+ F   
Sbjct: 633 LEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVG 692

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           + SH Q  QIY++L+++ S++K  GY+PD    L D+E+E+K + +  HSEK+A+ +GLI
Sbjct: 693 ETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLI 752

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S+ +   IRI KNLRVC DCH  IK +S    REIV+RD  RFHH K+GVCSC DYW
Sbjct: 753 STSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 212/439 (48%), Gaps = 44/439 (10%)

Query: 97  RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQT 156
           R  HA      M  +    D  ++  +LK+  R      G  VH    + G   D  V  
Sbjct: 6   RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 65

Query: 157 GLVGMYGACGKILDARLMFDKM-SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
            L+ +Y  CG    ARL+F+ M + RD+V WS M+  +  N +  + +  F +M      
Sbjct: 66  TLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY 125

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           P+E   + ++ ACS A     GE ++ F++        +L++ +      C  +DM    
Sbjct: 126 PNEYCFAAVIRACSNANYAWVGEIIYGFVVKT-----GYLEADVCV---GCELIDM---- 173

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
                          V G   +G +  A  +FD+M E++L+ W+ MI+ +A+    ++A+
Sbjct: 174 --------------FVKG---SGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAI 216

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
            LF +M++ G  PD+ T  SV+SAC  LG+L   +++H  + +     D+ V  +++DMY
Sbjct: 217 DLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMY 276

Query: 396 AKC---GSLESAREVFERMRRRNVISWTSMINAFAIHGDA-RNALIFFNKMKDESIDPNG 451
           AKC   GS++ +R+VFE+M   NV+SWT++I A+   G+  + A+  F KM    I PN 
Sbjct: 277 AKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNH 336

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC----MVDLFGRANLLREAL 507
            +F  VL AC +      G ++++     Y +        C    ++ ++ R+  + +A 
Sbjct: 337 FSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSLISMYARSGRMEDAR 391

Query: 508 ELVETMPFAPNVVIWGSLM 526
           +  + + F  N+V + +++
Sbjct: 392 KAFDIL-FEKNLVSYNAIV 409



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 211/461 (45%), Gaps = 48/461 (10%)

Query: 10  PLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P     S+ +S+C+ L  +   KQ H+++++L  +      + +   L           S
Sbjct: 229 PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLAL----DVCVGCSLVDMYAKCAADGS 284

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHR-PKHALKVFLKMLNEGLTIDRFSFPPILK 125
           +  +  +F Q+P          I A   S    K A+++F KM++  +  + FSF  +LK
Sbjct: 285 VDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLK 344

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A         G QV+    KLG  S   V   L+ MY   G++ DAR  FD +  +++V 
Sbjct: 345 ACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVS 404

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           ++ ++DGY +N   +E   LF E+  + +       + +LS  +  G +  GE +H  ++
Sbjct: 405 YNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL 464

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
                 +  + + LI+MY+ CG ++ A  +F+++  +N++  T+M++G+++ G       
Sbjct: 465 KGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHG------- 517

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
                                       AL++F++M   G KP+++T ++V+SAC+H+G+
Sbjct: 518 ------------------------FATRALEMFHKMLETGTKPNEITYVAVLSACSHVGM 553

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSM 422
           + + Q+ H        G   R+ +   ++D+  + G L  A E    M    + + W ++
Sbjct: 554 ISEGQK-HFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTL 612

Query: 423 INAFAIHGD---ARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           + A  +HG+    R+A      ++ E  DP     +  L+A
Sbjct: 613 LGACRVHGNTELGRHAAEMI--LEQEPDDPAAYILLSNLHA 651



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 168/350 (48%), Gaps = 47/350 (13%)

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           G      +  + M   N  PD    S +L +C R  N   G+ VH  ++ + + LD+ + 
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK-DL 315
           +TLI++Y+ CG                                 E ARLIF+ M  K DL
Sbjct: 65  NTLISLYSKCG-------------------------------DTETARLIFEGMGNKRDL 93

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + WSAM+S +A N+   +A+  F +M   G  P++    +VI AC++       + I+ +
Sbjct: 94  VSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGF 153

Query: 376 IDKNAF-GGDLRVNNAIIDMYAK-CGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
           + K  +   D+ V   +IDM+ K  G L SA +VF++M  RN+++WT MI  FA  G AR
Sbjct: 154 VVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCAR 213

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN---EYNIPPKYEHY 490
           +A+  F  M+     P+  T+  VL AC+  GL+  G+++ + +       ++       
Sbjct: 214 DAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVC-----V 268

Query: 491 GC-MVDLFGRA---NLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           GC +VD++ +      + ++ ++ E MP   NV+ W +++ A    GE +
Sbjct: 269 GCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSWTAIITAYVQSGECD 317


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 251/628 (39%), Positives = 374/628 (59%), Gaps = 35/628 (5%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + A+ +FL M   G   DRF++  +L A      L  G Q+H    +LG   D  V   L
Sbjct: 38  RDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSL 97

Query: 159 VGMYGAC---GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD-EVLNLFEEMKMSNV 214
           V MY  C   G + D+R +F++M   +++ W+ +I  Y Q+G  D E + LF +M   ++
Sbjct: 98  VDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHI 157

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
            P+    S +L AC    +   GE V+ + +   +A              NC        
Sbjct: 158 RPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIA------------SVNC-------- 197

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
                      V  +++S Y+R+G++EDAR  FD + EK+L+ ++A++ GYA+N   +EA
Sbjct: 198 -----------VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 246

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
             LFNE+   G+     T  S++S  A +G + + ++IH  + K  +  +  + NA+I M
Sbjct: 247 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 306

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y++CG++E+A +VF  M  RNVISWTSMI  FA HG A  AL  F+KM +    PN +T+
Sbjct: 307 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 366

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           + VL ACSH G++ EG++ F SM  E+ I P+ EHY CMVDL GR+ LL EA+E + +MP
Sbjct: 367 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 426

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
              + ++W +L+ ACRVHG  EL   AA+ +L+ +PD   A +LLSN++A   +W+DV +
Sbjct: 427 LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVK 486

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           +RKSMKER ++KE  CS IE+ N V+ F   + SH Q  QIY++L+++ S++K  GY+PD
Sbjct: 487 IRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPD 546

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
               L D+E+E+K + +  HSEK+A+ +GLIS+ +   IRI KNLRVC DCH  IK +S 
Sbjct: 547 TDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISM 606

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              REIV+RD  RFHH K+GVCSC DYW
Sbjct: 607 ATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 185/367 (50%), Gaps = 43/367 (11%)

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +FDKM  R++V W++MI  + Q G   + ++LF +M++S   PD    S +LSAC+  G 
Sbjct: 12  VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 71

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANC---GCMDMAKGLFDKVLLKNLVVSTAM 290
           L+ G+ +H  +I   +ALD  +  +L+ MYA C   G +D ++ +F+++   N++  TA+
Sbjct: 72  LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 131

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           ++ Y+++G+ +                              +EA++LF +M    ++P+ 
Sbjct: 132 ITAYAQSGECD------------------------------KEAIELFCKMISGHIRPNH 161

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
            +  SV+ AC +L      ++++ Y  K        V N++I MYA+ G +E AR+ F+ 
Sbjct: 162 FSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDI 221

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           +  +N++S+ ++++ +A +  +  A + FN++ D  I  +  TF  +L   +  G + +G
Sbjct: 222 LFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKG 281

Query: 471 REIFASMTNEYNIPPKYEHYGC----MVDLFGRANLLREALELVETMPFAPNVVIWGSLM 526
            +I   +     +   Y+   C    ++ ++ R   +  A ++   M    NV+ W S++
Sbjct: 282 EQIHGRL-----LKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMI 335

Query: 527 AACRVHG 533
                HG
Sbjct: 336 TGFAKHG 342



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 212/461 (45%), Gaps = 48/461 (10%)

Query: 10  PLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P     S+ +S+C+ L  +   KQ H+++++L  +      + +   L           S
Sbjct: 54  PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLAL----DVCVGCSLVDMYAKCAADGS 109

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHR-PKHALKVFLKMLNEGLTIDRFSFPPILK 125
           +  +  +F Q+P          I A + S    K A+++F KM++  +  + FSF  +LK
Sbjct: 110 VDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLK 169

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A         G QV+    KLG  S   V   L+ MY   G++ DAR  FD +  +++V 
Sbjct: 170 ACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVS 229

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           ++ ++DGY +N   +E   LF E+  + +       + +LS  +  G +  GE +H  ++
Sbjct: 230 YNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL 289

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
                 +  + + LI+MY+ CG ++ A  +F+++  +N++  T+M++G+++ G       
Sbjct: 290 KGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHG------- 342

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
                                       AL++F++M   G KP+++T ++V+SAC+H+G+
Sbjct: 343 ------------------------FATRALEMFHKMLETGTKPNEITYVAVLSACSHVGM 378

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSM 422
           + + Q+ H        G   R+ +   ++D+  + G L  A E    M    + + W ++
Sbjct: 379 ISEGQK-HFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTL 437

Query: 423 INAFAIHGD---ARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           + A  +HG+    R+A      ++ E  DP     +  L+A
Sbjct: 438 LGACRVHGNTELGRHAAEMI--LEQEPDDPAAYILLSNLHA 476



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 13/140 (9%)

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
           A +VF++M  RN+++WT MI  FA  G AR+A+  F  M+     P+  T+  VL AC+ 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 464 AGLVDEGREIFASMTN---EYNIPPKYEHYGC-MVDLFGRA---NLLREALELVETMPFA 516
            GL+  G+++ + +       ++       GC +VD++ +      + ++ ++ E MP  
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVC-----VGCSLVDMYAKCAADGSVDDSRKVFEQMP-E 122

Query: 517 PNVVIWGSLMAACRVHGEIE 536
            NV+ W +++ A    GE +
Sbjct: 123 HNVMSWTAIITAYAQSGECD 142


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/657 (38%), Positives = 382/657 (58%), Gaps = 35/657 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P          I   +     + A+ +FL M   G   DRF++  +L A   
Sbjct: 202 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 261

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC---GKILDARLMFDKMSYRDIVPW 186
              L  G Q+H    +LG   D  V   LV MY  C   G + D+R +F++M   +++ W
Sbjct: 262 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 321

Query: 187 SVMIDGYFQNGLFD-EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           + +I  Y Q+G  D E + LF +M   ++ P+    S +L AC    +   GE V+ + +
Sbjct: 322 TAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 381

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
              +A              NC                   V  +++S Y+R+G++EDAR 
Sbjct: 382 KLGIA------------SVNC-------------------VGNSLISMYARSGRMEDARK 410

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
            FD + EK+L+ ++A++ GYA+N   +EA  LFNE+   G+     T  S++S  A +G 
Sbjct: 411 AFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA 470

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           + + ++IH  + K  +  +  + NA+I MY++CG++E+A +VF  M  RNVISWTSMI  
Sbjct: 471 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 530

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
           FA HG A  AL  F+KM +    PN +T++ VL ACSH G++ EG++ F SM  E+ I P
Sbjct: 531 FAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 590

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
           + EHY CMVDL GR+ LL EA+E + +MP   + ++W +L+ ACRVHG  EL   AA+ +
Sbjct: 591 RMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 650

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
           L+ +PD   A +LLSN++A   +W+DV ++RKSMKER ++KE  CS IE+ N V+ F   
Sbjct: 651 LEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVG 710

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           + SH Q  QIY++L+++ S++K  GY+PD    L D+E+E+K + +  HSEK+A+ +GLI
Sbjct: 711 ETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLI 770

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S+ +   IRI KNLRVC DCH  IK +S    REIV+RD  RFHH K+GVCSC DYW
Sbjct: 771 STSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 218/452 (48%), Gaps = 45/452 (9%)

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
           + N+ IR +    R  HA      M  +    D  ++  +LK+  R      G  VH   
Sbjct: 12  LKNRLIRQLDVG-RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKL 70

Query: 144 TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM-SYRDIVPWSVMIDGYFQNGLFDEV 202
            + G   D  V   L+ +Y  CG    ARL+F+ M + RD+V WS M+  +  N +  + 
Sbjct: 71  MQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQA 130

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           +  F +M      P+E   + ++ ACS A     GE ++ F++        +L++ +   
Sbjct: 131 IWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKT-----GYLEADVCV- 184

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
              C  +DM                   V G   +G +  A  +FD+M E++L+ W+ MI
Sbjct: 185 --GCELIDM------------------FVKG---SGDLGSAYKVFDKMPERNLVTWTLMI 221

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
           + +A+    ++A+ LF +M++ G  PD+ T  SV+SAC  LG+L   +++H  + +    
Sbjct: 222 TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLA 281

Query: 383 GDLRVNNAIIDMYAKC---GSLESAREVFERMRRRNVISWTSMINAFAIHGDA-RNALIF 438
            D+ V  +++DMYAKC   GS++ +R+VFE+M   NV+SWT++I A+   G+  + A+  
Sbjct: 282 LDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIEL 341

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC----MV 494
           F KM    I PN  +F  VL AC +      G ++++     Y +        C    ++
Sbjct: 342 FCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSLI 396

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLM 526
            ++ R+  + +A +  + + F  N+V + +++
Sbjct: 397 SMYARSGRMEDARKAFDIL-FEKNLVSYNAIV 427



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 211/461 (45%), Gaps = 48/461 (10%)

Query: 10  PLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P     S+ +S+C+ L  +   KQ H+++++L  +      + +   L           S
Sbjct: 247 PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLAL----DVCVGCSLVDMYAKCAADGS 302

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHR-PKHALKVFLKMLNEGLTIDRFSFPPILK 125
           +  +  +F Q+P          I A   S    K A+++F KM++  +  + FSF  +LK
Sbjct: 303 VDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLK 362

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A         G QV+    KLG  S   V   L+ MY   G++ DAR  FD +  +++V 
Sbjct: 363 ACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVS 422

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           ++ ++DGY +N   +E   LF E+  + +       + +LS  +  G +  GE +H  ++
Sbjct: 423 YNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL 482

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
                 +  + + LI+MY+ CG ++ A  +F+++  +N++  T+M++G+++ G       
Sbjct: 483 KGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHG------- 535

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
                                       AL++F++M   G KP+++T ++V+SAC+H+G+
Sbjct: 536 ------------------------FATRALEMFHKMLETGTKPNEITYVAVLSACSHVGM 571

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSM 422
           + + Q+ H        G   R+ +   ++D+  + G L  A E    M    + + W ++
Sbjct: 572 ISEGQK-HFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTL 630

Query: 423 INAFAIHGD---ARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           + A  +HG+    R+A      ++ E  DP     +  L+A
Sbjct: 631 LGACRVHGNTELGRHAAEMI--LEQEPDDPAAYILLSNLHA 669


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 250/609 (41%), Positives = 367/609 (60%), Gaps = 38/609 (6%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           +P +   L+  Y ACG+    R +FD+++ +++V ++VMI  Y  NGL+ + L +F+ M 
Sbjct: 70  NPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMA 129

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
                PD      +L ACS +GNL  G  +H  ++   + ++ ++ + L++MY  C  +D
Sbjct: 130 NQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLD 189

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA--------------------------- 303
            A+ + D++  +++V   +MV+GY++ G+  DA                           
Sbjct: 190 AARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVT 249

Query: 304 ----------RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
                     + +F ++ EK LI W+ MI+ Y  N  P EA+ L+ +MQV G++PD V++
Sbjct: 250 NTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSI 309

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
            SV+ AC  L      +RIH Y+++     +L + NA+IDMYAKCG L+ AR VF++M  
Sbjct: 310 SSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMF 369

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           R+V+SWTSMI+A+ + G  ++A+  F KM+D    P+ + F+ VL ACSHAGLVDEGR  
Sbjct: 370 RDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYC 429

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           F  M  EY I P  EHY CMVDL GRA  + EA  L   MP  PN  +WGSL++ACRV+ 
Sbjct: 430 FNLMA-EYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYS 488

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
            + +A  AA  L QL P+  G  VLLSNIYAK  RWQDV  +R  M  +GI K    S +
Sbjct: 489 SMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNV 548

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW 653
           E+N+ VY FL  D+SH Q+ +IY+ L  ++  +K  GY+P+  SAL D+E+E+K   +  
Sbjct: 549 EINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAV 608

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HSEKLA+ + ++++K  S IRI KN+RVC DCH   KL+SK+  REI+IRD  RFHH++D
Sbjct: 609 HSEKLAIVFAILNTKPGSTIRITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRD 668

Query: 714 GVCSCKDYW 722
           GVCSC DYW
Sbjct: 669 GVCSCGDYW 677



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 229/476 (48%), Gaps = 53/476 (11%)

Query: 9   KPLTLPTSTAISS--CSSL-------THMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL 59
           KP   P  TA++   C+ +         +K+ H++IL +  + H   SL +KL+    + 
Sbjct: 26  KPQLSPKFTALTEDLCNKILDVNPDAKTLKKLHSKIL-IDQNLHPNPSLGIKLMRAYAAC 84

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
                    Y   IF +I        N  IR+   +   + AL VF  M N+G   D ++
Sbjct: 85  GEPC-----YTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYT 139

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +P +LKA + +  L  G+Q+HG   KLG   + ++  GLV MYG C  +  AR + D+M 
Sbjct: 140 YPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMP 199

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG--NLSYG 237
            RD+V W+ M+ GY QNG F++ L L  EM+   ++PD   +  +L A +     N+ Y 
Sbjct: 200 GRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYV 259

Query: 238 E------------------AVHEFIIDNNVALDAHLQSTLITMYANC--------GCMDM 271
           +                  AV+      N A+D +LQ  +  +  +          C D+
Sbjct: 260 KDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDL 319

Query: 272 AKGLFD---------KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           +  +           K L  NL++  A++  Y++ G +++AR +FDQM+ +D++ W++MI
Sbjct: 320 SAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMI 379

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
           S Y  +   ++A+ LF +M+  G  PD +  +SV++AC+H G++D+ +     + +    
Sbjct: 380 SAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMAEYGIT 439

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALI 437
             +   N ++D+  + G ++ A  +  +M    N   W S+++A  ++     AL+
Sbjct: 440 PGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALL 495



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 20/291 (6%)

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
           +K L D+ L  N  +   ++  Y+  G+    R IFD++ +K+++ ++ MI  Y  N   
Sbjct: 59  SKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLY 118

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           Q+AL +F  M   G  PD  T   V+ AC+  G L    +IH  + K     +L + N +
Sbjct: 119 QDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGL 178

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           + MY KC  L++AR V + M  R+++SW SM+  +A +G   +AL    +M+D  + P+ 
Sbjct: 179 VSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDA 238

Query: 452 VTFIGVLYACSHAGL--VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
            T   +L A ++     V   +++F  +  +  I      +  M+ ++    +  EA++L
Sbjct: 239 GTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLIS-----WNVMIAVYVNNAMPNEAVDL 293

Query: 510 VETMP---FAPNVVIWGSLMAAC----------RVHGEIELAEFAAKQLLQ 547
              M      P+ V   S++ AC          R+H  +E  +     LL+
Sbjct: 294 YLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLE 344


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 258/646 (39%), Positives = 380/646 (58%), Gaps = 40/646 (6%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I  ++ S     AL+ F  M    L  +R +FP  +K+ +    L  G Q H     
Sbjct: 121 NSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALI 180

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
            GF  D FV + LV MY  CG++ DAR +FD++S+R+IV W+ MI GY QN      L L
Sbjct: 181 FGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLL 240

Query: 206 FEEMKM--------SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
           F+E  +          V  D + +  +LSACSR    S  E VH F+I      D  +++
Sbjct: 241 FKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVEN 300

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
           TL+  YA C                               G++  +R +FD M E+D+I 
Sbjct: 301 TLMDAYAKC-------------------------------GELGVSRRVFDGMAERDVIS 329

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCG-MKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
           W+++I+ YA+N    E++++F+ M   G +  + VT+ +V+ ACAH G     + IH  +
Sbjct: 330 WNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQV 389

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            K     ++ V  +IIDMY KCG +E AR+ F+RMR +NV SW++M+  + +HG A+ AL
Sbjct: 390 IKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEAL 449

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             F +M    + PN +TF+ VL ACSHAGL++EG   F +M++E+++ P  EHYGCMVDL
Sbjct: 450 EVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDL 509

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
            GRA  L+EA +L++ M   P+ V+WG+L+ ACR+H  ++L E +A++L +LDP + G  
Sbjct: 510 LGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYY 569

Query: 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           VLLSNIYA   RW+DV  +R  MK  G++K    S +++   V+ FL  DR H Q ++IY
Sbjct: 570 VLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIY 629

Query: 617 EKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIV 676
           E L ++  +L+  GYVPD+ S L D+  EEK  V+  HSEKLA+ +G++++   + I I+
Sbjct: 630 EYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHII 689

Query: 677 KNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KNLRVC DCH  IK +SK+  REIV+RD  RFHH++DG+CSC DYW
Sbjct: 690 KNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 13/168 (7%)

Query: 306 IFDQMVEK-DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
           +F++ V+K ++  W+++I+  A +    EAL+ F+ M+   +KP++ T    I +C+ L 
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L   ++ H       F  DL V++A++DMY+KCG L  AR +F+ +  RN++SWTSMI 
Sbjct: 167 DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 226

Query: 425 AFAIHGDARNALIFFNK-MKDES---------IDPNGVTFIGVLYACS 462
            +  + DA  AL+ F + + +ES         +DP  +  + VL ACS
Sbjct: 227 GYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDP--IAMVSVLSACS 272



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 2/116 (1%)

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
           + NV SW S+I   A  GD+  AL  F+ M+  S+ PN  TF   + +CS    +  GR+
Sbjct: 114 KTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQ 173

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
                   +   P       +VD++ +   LR+A  L + +    N+V W S++  
Sbjct: 174 AHQQALI-FGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR-NIVSWTSMITG 227


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/631 (41%), Positives = 375/631 (59%), Gaps = 40/631 (6%)

Query: 101  ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
            AL+ F  +   GL   R SFP  +K+ +    L+ G   H      GF +D FV + L+ 
Sbjct: 1999 ALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALID 2058

Query: 161  MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLF-----EEMKM---S 212
            MY  CG++ DAR +FD++  R++V W+ MI GY QN   D  L LF     EE ++   +
Sbjct: 2059 MYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGN 2118

Query: 213  NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
            NV  D +V+  +LSACSR       E VH F++         + +TL+  YA C      
Sbjct: 2119 NVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKC------ 2172

Query: 273  KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
                                     GQ   ++ +FD M EKD I W++MI+ YA++    
Sbjct: 2173 -------------------------GQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 2207

Query: 333  EALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
            EAL++F+ M +  G++ + VT+ +V+ ACAH G L   + IH  + K     ++ V  +I
Sbjct: 2208 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSI 2267

Query: 392  IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
            IDMY KCG +E A++ F+RM+ +NV SWT+M+  + +HG A+ AL  F KM    + PN 
Sbjct: 2268 IDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNY 2327

Query: 452  VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
            +TF+ VL ACSHAGLV+EG   F +M ++Y+I P  EHYGCMVDLFGRA  L EA  L++
Sbjct: 2328 ITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIK 2387

Query: 512  TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
             M   P+ V+WGSL+ ACR+H  ++L E AA++L +LDPD+ G  VLLSN+YA   RW D
Sbjct: 2388 RMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWAD 2447

Query: 572  VGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY 631
            V  +R  MK R ++K    S +E+   V+ FL  D+ H   + IY+ L ++  EL+  GY
Sbjct: 2448 VERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGY 2507

Query: 632  VPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKL 691
            VP++ S L D+++EEK  ++  HSEKLA+ +G+++S   + I I+KNLRVC DCH  IKL
Sbjct: 2508 VPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKL 2567

Query: 692  VSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            +SK+  R+ V+RD  RFHH+KDGVCSC DYW
Sbjct: 2568 ISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 214/371 (57%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           Q+H    + G  +D  +   L+ +Y   G+I  A L+F ++       W+++I     NG
Sbjct: 45  QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
           L ++ L L++ M    +  D+     ++ AC+   ++  G+ VH  +I    + D  +Q+
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQN 164

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
            LI  Y  CG    A  +F+K+ ++N+V  T ++SG    G +++AR IFD++  K+++ 
Sbjct: 165 NLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVS 224

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W+AMI+GY  N  P+EAL+LF  MQ   + P++ TM+S+I AC  +G+L   + IH Y  
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAI 284

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           KN     + +  A+IDMY+KCGS++ A EVFE M R+++ +W SMI +  +HG  + AL 
Sbjct: 285 KNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALN 344

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F++M+  ++ P+ +TFIGVL AC H   V EG   F  MT  Y I P  EHY CM +L+
Sbjct: 345 LFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELY 404

Query: 498 GRANLLREALE 508
            R+N L EA +
Sbjct: 405 ARSNNLDEAFK 415



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 182/376 (48%), Gaps = 69/376 (18%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           + +C +  H++Q HA+I++   S  S + LL + L+  +S    T   + YA+ +F QI 
Sbjct: 34  LQNCKNFKHLRQIHAKIIR---SGLSNDQLLTRKLIHLYS----THGRIAYAILLFYQIQ 86

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P +   N  IRA + +   + AL ++  M+ +G+  D+F+FP ++KA      +  G  
Sbjct: 87  NPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKV 146

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYG-------------------------------ACGK 167
           VHG   K GF  D FVQ  L+  Y                                +CG 
Sbjct: 147 VHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
           + +AR +FD++  +++V W+ MI+GY +N   +E L LF+ M+  N+ P+E  +  ++ A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           C+  G L+ G  +H++ I N + +  +L + LI MY+ C                     
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKC--------------------- 305

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
                     G ++DA  +F+ M  K L  W++MI+    +   QEAL LF+EM+   +K
Sbjct: 306 ----------GSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVK 355

Query: 348 PDKVTMLSVISACAHL 363
           PD +T + V+ AC H+
Sbjct: 356 PDAITFIGVLCACVHI 371



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/417 (27%), Positives = 187/417 (44%), Gaps = 62/417 (14%)

Query: 182  DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
            ++  W+ +I    + G   E L  F  ++   + P        + +CS   +L  G   H
Sbjct: 1979 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 2038

Query: 242  EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
            +         D  + S LI MY+ CG +  A+ LFD++ L+N+V  T+M++GY +  Q +
Sbjct: 2039 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQAD 2098

Query: 302  DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
            +A L+F   +E++    + +  G   NN P                 D V M+SV+SAC+
Sbjct: 2099 NALLLFKDFLEEE----TEVEDG---NNVPL----------------DSVVMVSVLSACS 2135

Query: 362  HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
             +      + +H ++ K  F G + V N ++D YAKCG    +++VF+ M  ++ ISW S
Sbjct: 2136 RVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNS 2195

Query: 422  MINAFAIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDEGREI---FASM 477
            MI  +A  G +  AL  F+ M +   +  N VT   VL AC+HAG +  G+ I      M
Sbjct: 2196 MIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM 2255

Query: 478  TNEYNI---------------------------PPKYEHYGCMVDLFGRANLLREALELV 510
              EYN+                               + +  MV  +G     +EAL++ 
Sbjct: 2256 DLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIF 2315

Query: 511  ETMPFA---PNVVIWGSLMAACRVHGEIELAEF---AAKQLLQLDP--DHDGALVLL 559
              M  A   PN + + S++AAC   G +E       A K    ++P  +H G +V L
Sbjct: 2316 YKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDL 2372



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 157/328 (47%), Gaps = 47/328 (14%)

Query: 265 NCGCMDMAKGLFDKVLLKNL----VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
           NC      + +  K++   L    +++  ++  YS  G++  A L+F Q+       W+ 
Sbjct: 36  NCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNL 95

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           +I     N   ++AL L+  M   G+  DK T   VI AC +   +D  + +H  + K  
Sbjct: 96  IIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYG 155

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF-------------- 426
           F GD+ V N +ID Y KCG    A +VFE+MR RNV+SWT++I+                
Sbjct: 156 FSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFD 215

Query: 427 ------------AIHGDARN-----ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
                        I+G  RN     AL  F +M+ E+I PN  T + ++ AC+  G++  
Sbjct: 216 EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTL 275

Query: 470 GREIFASMTNEYNIPPKYE---HYG-CMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
           GR I     ++Y I    E   + G  ++D++ +   +++A+E+ ETMP   ++  W S+
Sbjct: 276 GRGI-----HDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP-RKSLPTWNSM 329

Query: 526 MAACRVH--GEIELAEFAAKQLLQLDPD 551
           + +  VH  G+  L  F+  + + + PD
Sbjct: 330 ITSLGVHGLGQEALNLFSEMERVNVKPD 357



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 149/327 (45%), Gaps = 54/327 (16%)

Query: 307  FDQMVEKDLI-CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
            F + V+K  +  W+++I+  A      EAL+ F+ ++  G+ P + +    I +C+ L  
Sbjct: 1971 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 2030

Query: 366  LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
            L   +  H       F  DL V++A+IDMY+KCG L+ AR +F+ +  RNV+SWTSMI  
Sbjct: 2031 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 2090

Query: 426  FAIHGDARNALIFFNKMKDE--------SIDPNGVTFIGVLYACS-----------HAGL 466
            +  +  A NAL+ F    +E        ++  + V  + VL ACS           H  +
Sbjct: 2091 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFV 2150

Query: 467  VDEG------------------------REIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
            V +G                        +++F  M  + +I      +  M+ ++ ++ L
Sbjct: 2151 VKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDIS-----WNSMIAVYAQSGL 2205

Query: 503  LREALE----LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL-V 557
              EALE    +V  +    N V   +++ AC   G +   +    Q++++D +++  +  
Sbjct: 2206 SGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGT 2265

Query: 558  LLSNIYAKDKRWQDVGELRKSMKERGI 584
             + ++Y K  R +   +    MKE+ +
Sbjct: 2266 SIIDMYCKCGRVEMAKKTFDRMKEKNV 2292



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 102/217 (47%), Gaps = 7/217 (3%)

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           ++IH  I ++    D  +   +I +Y+  G +  A  +F +++     +W  +I A  I+
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G +  AL+ +  M  + I  +  TF  V+ AC++   +D G+ +  S+  +Y        
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLI-KYGFSGDVFV 162

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
              ++D + +    R AL++ E M    NVV W ++++     G+++     A+++    
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMR-VRNVVSWTTVISGLISCGDLQ----EARRIFDEI 217

Query: 550 PDHD-GALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585
           P  +  +   + N Y ++++ ++  EL K M+   I 
Sbjct: 218 PSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIF 254


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 251/628 (39%), Positives = 374/628 (59%), Gaps = 35/628 (5%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + A+ +FL M   G   DRF++  +L A      L  G Q+H    +LG   D  V   L
Sbjct: 33  RDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSL 92

Query: 159 VGMYGAC---GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD-EVLNLFEEMKMSNV 214
           V MY  C   G + D+R +F++M   +++ W+ +I  Y Q+G  D E + LF +M   ++
Sbjct: 93  VDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHI 152

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
            P+    S +L AC    +   GE V+ + +   +A              NC        
Sbjct: 153 RPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIA------------SVNC-------- 192

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
                      V  +++S Y+R+G++EDAR  FD + EK+L+ ++A++ GYA+N   +EA
Sbjct: 193 -----------VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 241

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
             LFNE+   G+     T  S++S  A +G + + ++IH  + K  +  +  + NA+I M
Sbjct: 242 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 301

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y++CG++E+A +VF  M  RNVISWTSMI  FA HG A  AL  F+KM +    PN +T+
Sbjct: 302 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 361

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           + VL ACSH G++ EG++ F SM  E+ I P+ EHY CMVDL GR+ LL EA+E + +MP
Sbjct: 362 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 421

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
              + ++W +L+ ACRVHG  EL   AA+ +L+ +PD   A +LLSN++A   +W+DV +
Sbjct: 422 LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVK 481

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           +RKSMKER ++KE  CS IE+ N V+ F   + SH Q  QIY++L+++ S++K  GY+PD
Sbjct: 482 IRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPD 541

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
               L D+E+E+K + +  HSEK+A+ +GLIS+ +   IRI KNLRVC DCH  IK +S 
Sbjct: 542 TDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISM 601

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              REIV+RD  RFHH K+GVCSC DYW
Sbjct: 602 ATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 185/367 (50%), Gaps = 43/367 (11%)

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +FDKM  R++V W++MI  + Q G   + ++LF +M++S   PD    S +LSAC+  G 
Sbjct: 7   VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 66

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANC---GCMDMAKGLFDKVLLKNLVVSTAM 290
           L+ G+ +H  +I   +ALD  +  +L+ MYA C   G +D ++ +F+++   N++  TA+
Sbjct: 67  LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 126

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           ++ Y+++G+ +                              +EA++LF +M    ++P+ 
Sbjct: 127 ITAYAQSGECD------------------------------KEAIELFCKMISGHIRPNH 156

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
            +  SV+ AC +L      ++++ Y  K        V N++I MYA+ G +E AR+ F+ 
Sbjct: 157 FSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDI 216

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           +  +N++S+ ++++ +A +  +  A + FN++ D  I  +  TF  +L   +  G + +G
Sbjct: 217 LFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKG 276

Query: 471 REIFASMTNEYNIPPKYEHYGC----MVDLFGRANLLREALELVETMPFAPNVVIWGSLM 526
            +I   +     +   Y+   C    ++ ++ R   +  A ++   M    NV+ W S++
Sbjct: 277 EQIHGRL-----LKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMI 330

Query: 527 AACRVHG 533
                HG
Sbjct: 331 TGFAKHG 337



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 212/461 (45%), Gaps = 48/461 (10%)

Query: 10  PLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P     S+ +S+C+ L  +   KQ H+++++L  +      + +   L           S
Sbjct: 49  PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLAL----DVCVGCSLVDMYAKCAADGS 104

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHR-PKHALKVFLKMLNEGLTIDRFSFPPILK 125
           +  +  +F Q+P          I A + S    K A+++F KM++  +  + FSF  +LK
Sbjct: 105 VDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLK 164

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A         G QV+    KLG  S   V   L+ MY   G++ DAR  FD +  +++V 
Sbjct: 165 ACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVS 224

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           ++ ++DGY +N   +E   LF E+  + +       + +LS  +  G +  GE +H  ++
Sbjct: 225 YNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL 284

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
                 +  + + LI+MY+ CG ++ A  +F+++  +N++  T+M++G+++ G       
Sbjct: 285 KGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHG------- 337

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
                                       AL++F++M   G KP+++T ++V+SAC+H+G+
Sbjct: 338 ------------------------FATRALEMFHKMLETGTKPNEITYVAVLSACSHVGM 373

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSM 422
           + + Q+ H        G   R+ +   ++D+  + G L  A E    M    + + W ++
Sbjct: 374 ISEGQK-HFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTL 432

Query: 423 INAFAIHGD---ARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           + A  +HG+    R+A      ++ E  DP     +  L+A
Sbjct: 433 LGACRVHGNTELGRHAAEMI--LEQEPDDPAAYILLSNLHA 471



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 13/140 (9%)

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
           A +VF++M  RN+++WT MI  FA  G AR+A+  F  M+     P+  T+  VL AC+ 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 464 AGLVDEGREIFASMTN---EYNIPPKYEHYGC-MVDLFGRA---NLLREALELVETMPFA 516
            GL+  G+++ + +       ++       GC +VD++ +      + ++ ++ E MP  
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVC-----VGCSLVDMYAKCAADGSVDDSRKVFEQMP-E 117

Query: 517 PNVVIWGSLMAACRVHGEIE 536
            NV+ W +++ A    GE +
Sbjct: 118 HNVMSWTAIITAYAQSGECD 137


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/567 (41%), Positives = 355/567 (62%), Gaps = 31/567 (5%)

Query: 156 TGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
           T L+ MY  CG +  AR +F+ ++ + +V W+ MI G  ++   +E   LF  M+  N+ 
Sbjct: 236 TALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIF 295

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           P+E+ +  ++  C   G L  G+ +H +I+ N  ++                        
Sbjct: 296 PNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSV------------------------ 331

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
                  +L ++TA+V  Y +   + +AR +FD    +D++ W+AM+S YA+ N   +A 
Sbjct: 332 -------SLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAF 384

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
            LF++M+  G++P KVT++S++S CA  G LD  + +H YIDK     D  +N A++DMY
Sbjct: 385 NLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMY 444

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           AKCG + +A  +F     R++  W ++I  FA+HG    AL  F +M+ + + PN +TFI
Sbjct: 445 AKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFI 504

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
           G+L+ACSHAGLV EG+++F  M + + + P+ EHYGCMVDL GRA LL EA E++++MP 
Sbjct: 505 GLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPI 564

Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575
            PN ++WG+L+AACR+H   +L E AA QLL+++P++ G  VL+SNIYA   RW D   +
Sbjct: 565 KPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGV 624

Query: 576 RKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
           RK+MK  G+ KE   S IE+N  V+EFL  D+SH Q  +I E L E+  +L  AGYVPD 
Sbjct: 625 RKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDT 684

Query: 636 HSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKV 695
            + L+++++EEK   + +HSEKLA+ +GLIS+   + IRIVKNLRVC DCH   KL+SK+
Sbjct: 685 STVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKI 744

Query: 696 YAREIVIRDRTRFHHYKDGVCSCKDYW 722
           Y R I++RDR RFHH+++G CSC DYW
Sbjct: 745 YGRVIIVRDRNRFHHFREGYCSCGDYW 771



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 217/439 (49%), Gaps = 39/439 (8%)

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
           F  P +LKA  +      G ++HG   K G   D FV   L+ MYG C  +  ARL+FDK
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           M  RD+V WS MI    +N  FD  L L  EM    V P E+ +  +++  +   N+  G
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 238 EAVHEFII--DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
           +A+H ++I   NN  +     + L+ MYA CG + +A+ LF+ +  K +V  TAM++G  
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 274

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           R+ ++E                               E  KLF  MQ   + P+++TMLS
Sbjct: 275 RSNRLE-------------------------------EGTKLFIRMQEENIFPNEITMLS 303

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           +I  C   G L   +++H YI +N F   L +  A++DMY KC  + +AR +F+  + R+
Sbjct: 304 LIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRD 363

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V+ WT+M++A+A       A   F++M+   + P  VT + +L  C+ AG +D G+ + +
Sbjct: 364 VMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHS 423

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL-VETMPFAPNVVIWGSLMAACRVH-- 532
            +  E  +         +VD++ +   +  A  L +E +  + ++ +W +++    +H  
Sbjct: 424 YIDKE-RVEVDCILNTALVDMYAKCGDINAAGRLFIEAI--SRDICMWNAIITGFAMHGY 480

Query: 533 GEIELAEFAAKQLLQLDPD 551
           GE  L  FA  +   + P+
Sbjct: 481 GEEALDIFAEMERQGVKPN 499



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 202/435 (46%), Gaps = 56/435 (12%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP- 64
           +P++   +      +  +++   K  HA +++ S++ H               +PTTT  
Sbjct: 192 RPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEH-------------MGVPTTTAL 238

Query: 65  -------SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117
                    L  A  +F+ +           I     S+R +   K+F++M  E +  + 
Sbjct: 239 LDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNE 298

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
            +   ++        L  G Q+H    + GF     + T LV MYG C  I +AR +FD 
Sbjct: 299 ITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDS 358

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
              RD++ W+ M+  Y Q    D+  NLF++M+ S V P ++ +  +LS C+ AG L  G
Sbjct: 359 TQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG 418

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
           + VH +I    V +D  L + L+ MYA CG ++ A  LF + + +++ +  A+++G++  
Sbjct: 419 KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFA-- 476

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
                                   + GY E     EAL +F EM+  G+KP+ +T + ++
Sbjct: 477 ------------------------MHGYGE-----EALDIFAEMERQGVKPNDITFIGLL 507

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RR 414
            AC+H G++ + +++   +  + FG   ++ +   ++D+  + G L+ A E+ + M  + 
Sbjct: 508 HACSHAGLVTEGKKLFEKM-VHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKP 566

Query: 415 NVISWTSMINAFAIH 429
           N I W +++ A  +H
Sbjct: 567 NTIVWGALVAACRLH 581


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/617 (38%), Positives = 369/617 (59%), Gaps = 33/617 (5%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGA--CGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           Q+HGL  + G   D +V   L+  Y          A  +F  +   ++  W+++I G  +
Sbjct: 51  QLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLE 110

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           N    + +  +  M + +  P++     +  ACS A  +  G  +H  ++ + +  D H+
Sbjct: 111 NNKLFKAIYFYGRMVI-DARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHI 169

Query: 256 QSTLITMYAN------------------------------CGCMDMAKGLFDKVLLKNLV 285
           +S  I MYA+                              CG ++ AKGLF ++ +KN+ 
Sbjct: 170 KSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIG 229

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
               M++G ++ G + DAR +FD+M E+D I WS+M+ GY      +EAL++F +MQ   
Sbjct: 230 SWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREE 289

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
            +P +  + SV++AC+++G +DQ + +H Y+ +N+   D  +  A++DMYAKCG L+   
Sbjct: 290 TRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGW 349

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
           EVFE M+ R + +W +MI   AIHG A +AL  F+K+++  + PNG+T +GVL AC+HAG
Sbjct: 350 EVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAG 409

Query: 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
            VD+G  IF +M   Y + P+ EHYGCMVDL GR+ L  EA +L+ +MP  PN  +WG+L
Sbjct: 410 FVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGAL 469

Query: 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585
           + ACR+HG  +LAE   K LL+L+P + G  VLLSNIYAK  R+ DV ++RK MK+RGI 
Sbjct: 470 LGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIK 529

Query: 586 KERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDE 645
                S +++N  V+EF   D SH Q  +IY KL  +   L+ AG+ PD    L D+++E
Sbjct: 530 TVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEE 589

Query: 646 EKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDR 705
           EK   + +HSEKLA+ +GLI++     I IVKNLRVC+DCH+  KL+S+++ REI++RDR
Sbjct: 590 EKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDR 649

Query: 706 TRFHHYKDGVCSCKDYW 722
            R+HH+K+G CSCKD+W
Sbjct: 650 VRYHHFKNGTCSCKDFW 666



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 128/511 (25%), Positives = 222/511 (43%), Gaps = 120/511 (23%)

Query: 2   STLSQPTKPL-----------TLPTSTAIS-----SCSSLTHMKQTHAQILKLSHSHHSQ 45
           S L  P KP+            LP  T +      S +SL ++ Q H  +L+   S H Q
Sbjct: 7   SHLPSPFKPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHGLVLR---SGHFQ 63

Query: 46  NSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVF 105
           +  +   LL  ++ P    S+  +AL +FS IP P   + N  I+    +++   A+  +
Sbjct: 64  DHYVSGALLKCYANPHF--SNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFY 121

Query: 106 LKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC 165
            +M+ +    ++F++P + KA + A+ + EG Q+HG   K G GSD  +++  + MY + 
Sbjct: 122 GRMVIDARP-NKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASF 180

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV----------- 214
           G++ DAR MF      D+V W+ MIDGY + G+ +    LF +M + N+           
Sbjct: 181 GRLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLA 239

Query: 215 ----------------EPDEMVLSKILSACSRAGN------------------------- 233
                           E DE+  S ++     AG                          
Sbjct: 240 KGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSS 299

Query: 234 ----------LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
                     +  G  VH ++  N++ LDA L + L+ MYA CG +DM   +F+++  + 
Sbjct: 300 VLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKERE 359

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           +    AM+ G +  G+ ED                               AL+LF+++Q 
Sbjct: 360 IFTWNAMIGGLAIHGRAED-------------------------------ALELFSKLQE 388

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD--LRVNNAIIDMYAKCGSL 401
             MKP+ +T++ V++ACAH G +D+  RI   + +  +G D  L     ++D+  + G  
Sbjct: 389 GRMKPNGITLVGVLTACAHAGFVDKGLRIFQTM-REFYGVDPELEHYGCMVDLLGRSGLF 447

Query: 402 ESAREVFERM-RRRNVISWTSMINAFAIHGD 431
             A ++   M  + N   W +++ A  IHG+
Sbjct: 448 SEAEDLINSMPMKPNAAVWGALLGACRIHGN 478



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 118/275 (42%), Gaps = 32/275 (11%)

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK--CGSLESAREVFERMRRRNVISWTSMI 423
           L    ++H  + ++    D  V+ A++  YA     + + A +VF  +   NV  W  +I
Sbjct: 46  LQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVI 105

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA-----SMT 478
                +     A+ F+ +M  ++  PN  T+  +  ACS A  V EGR+I        + 
Sbjct: 106 KGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIG 164

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
           ++ +I     H   M   FGR    R+     E+     +VV W +++      G +E  
Sbjct: 165 SDVHIKSAGIH---MYASFGRLEDARKMFYSGES-----DVVCWNTMIDGYLKCGVLE-- 214

Query: 539 EFAAKQLL-QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNN 597
             AAK L  Q+   + G+  ++ N  AK     D  +L   M ER          I  ++
Sbjct: 215 --AAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSER--------DEISWSS 264

Query: 598 EVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYV 632
            V  +++A R +K+  +I++++     E +P  ++
Sbjct: 265 MVDGYISAGR-YKEALEIFQQMQR--EETRPGRFI 296


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 279/720 (38%), Positives = 386/720 (53%), Gaps = 41/720 (5%)

Query: 4    LSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTT 63
            L   T  L++  ++AI+S S+L        + +K+ H H  +   +  L + +  +    
Sbjct: 418  LPNLTTYLSILNASAIASTSAL--------EWVKVVHKHAEEAGFISDLRIGNALIHMYA 469

Query: 64   P-SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
               S+  A  +F  +        N  +  ++ +     A  VFL+M  EGL  D  ++  
Sbjct: 470  KCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLS 529

Query: 123  ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
            +L      + L    +VH    + G  SD  V +  + MY  CG I DARL+FDK+S R 
Sbjct: 530  LLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRH 589

Query: 183  IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
            +  W+ MI G  Q     E L+LF +M+     PD      ILSA      L + + VH 
Sbjct: 590  VTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHS 649

Query: 243  FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
               D                           GL D      L V  A+V  YS+ G V+ 
Sbjct: 650  HATD--------------------------AGLVD------LRVGNALVHTYSKCGNVKY 677

Query: 303  ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
            A+ +FD MVE+++  W+ MI G A++    +A   F +M   G+ PD  T +S++SACA 
Sbjct: 678  AKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACAS 737

Query: 363  LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
             G L+  + +H +        DLRV NA++ MYAKCGS++ AR VF+ M  R+V SWT M
Sbjct: 738  TGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVM 797

Query: 423  INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
            I   A HG    AL FF KMK E   PNG +++ VL ACSHAGLVDEGR  F SMT +Y 
Sbjct: 798  IGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYG 857

Query: 483  IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
            I P  EHY CMVDL GRA LL EA   +  MP  P+   WG+L+ AC  +G +E+AEFAA
Sbjct: 858  IEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAA 917

Query: 543  KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
            K+ L+L P      VLLSNIYA   +W+    +R  M+ +GI KE   S IE++N ++ F
Sbjct: 918  KERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSF 977

Query: 603  LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
            +  D SH ++ +IY +LN++I  LK  GYVPD    L + + E K + +  HSEKLA+ Y
Sbjct: 978  VVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVY 1037

Query: 663  GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            GL+ ++    IR+ KNLRVC DCH   K +SK+  REIV RD  RFHH+KDGVCSC DYW
Sbjct: 1038 GLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/493 (28%), Positives = 234/493 (47%), Gaps = 36/493 (7%)

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
            K A+ +    + +G+ ID FS+  IL+   + E +L   QVH    K G   + +V   
Sbjct: 99  AKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANK 158

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+ +Y  CG++  AR +FDK+  ++I  W+ MI GY + G  ++ + ++++M+    +P+
Sbjct: 159 LLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPN 218

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           E+    IL AC    NL +G+ +H  II +    D  +++ L+ MY  C           
Sbjct: 219 EITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKC----------- 267

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                               G +EDA+LIFD+MVE+++I W+ MI G A     QEA  L
Sbjct: 268 --------------------GSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHL 307

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F +MQ  G  P+  T +S+++A A  G L+  + +H +        DLRV NA++ MYAK
Sbjct: 308 FLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAK 367

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
            GS++ AR VF+ M  R++ SWT MI   A HG  + A   F +M+     PN  T++ +
Sbjct: 368 SGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSI 427

Query: 458 LYACSHAGLVD-EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           L A + A     E  ++      E            ++ ++ +   + +A  + + M   
Sbjct: 428 LNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMC-D 486

Query: 517 PNVVIWGSLMAACRVH--GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
            +V+ W ++M     +  G      F   Q   L PD    L LL N +      + V E
Sbjct: 487 RDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLL-NTHGSTDALEWVNE 545

Query: 575 LRKSMKERGILKE 587
           + K   E G++ +
Sbjct: 546 VHKHAVETGLISD 558



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 148/536 (27%), Positives = 229/536 (42%), Gaps = 90/536 (16%)

Query: 97  RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQT 156
           R + A  +FL+M  EG   + +++  IL A A A  L    +VH      G   D  V  
Sbjct: 300 RGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGN 359

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
            LV MY   G I DAR++FD M+ RDI  W+VMI G  Q+G   E  +LF +M+ +   P
Sbjct: 360 ALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLP 419

Query: 217 DEMVLSKILSACSRAGN--LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
           +      IL+A + A    L + + VH+   +     D  + + LI MYA CG +D A+ 
Sbjct: 420 NLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARL 479

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
           +FD +  ++++   AM+ G ++ G                  C               EA
Sbjct: 480 VFDGMCDRDVISWNAMMGGLAQNG------------------C-------------GHEA 508

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
             +F +MQ  G+ PD  T LS+++       L+    +H +  +     D RV +A I M
Sbjct: 509 FTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHM 568

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y +CGS++ AR +F+++  R+V +W +MI   A     R AL  F +M+ E   P+  TF
Sbjct: 569 YIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTF 628

Query: 455 IGVLYA----------------CSHAGLVD------------------EGREIFASMTNE 480
           I +L A                 + AGLVD                    +++F  M  E
Sbjct: 629 INILSANVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMV-E 687

Query: 481 YNIPP------KYEHYGCMVDLFGR-ANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            N+            +GC  D F     +LRE +         P+   + S+++AC   G
Sbjct: 688 RNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGI--------VPDATTYVSILSACASTG 739

Query: 534 EIELAE----FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585
            +E  +     A    L  D     ALV   ++YAK     D   +   M ER + 
Sbjct: 740 ALEWVKEVHNHAVSAGLVSDLRVGNALV---HMYAKCGSIDDARSVFDDMVERDVF 792


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/770 (34%), Positives = 418/770 (54%), Gaps = 78/770 (10%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83
           SLT  K+ H   LK  ++ ++ +S+L KL     S      + +  A  +F +IP P   
Sbjct: 23  SLTEAKKIHQHFLK--NTSNADSSVLHKLTRLYLSC-----NQVVLARRLFDEIPNPSVI 75

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
           + N+ IRA +W+     A+ ++  ML+ G+  +++++P +LKA +    + +G+++H   
Sbjct: 76  LWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHA 135

Query: 144 TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
              G  SD FV T LV  Y  CG +++A+ +F  MS+RD+V W+ MI G    GL D+ +
Sbjct: 136 KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAV 195

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            L  +M+   + P+   +  +L     A  L +G+A+H + +  +      + + L+ MY
Sbjct: 196 QLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMY 255

Query: 264 ANC-------------------------------GCMDMAKGLFDKVLLKN--------- 283
           A C                                CM  A  LFD+++LK+         
Sbjct: 256 AKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTL 315

Query: 284 -------------------------------LVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
                                          +++   ++S Y++ G ++DA   FD+M  
Sbjct: 316 GSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNP 375

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           KD + +SA++SG  +N +   AL +F  MQ+ G+ PD  TML V+ AC+HL  L      
Sbjct: 376 KDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCS 435

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H Y+    F  D  + NA+IDMY+KCG +  AREVF RM R +++SW +MI  + IHG  
Sbjct: 436 HGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLG 495

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
             AL  F+ +    + P+ +TFI +L +CSH+GLV EGR  F +M+ +++I P+ EH  C
Sbjct: 496 MEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCIC 555

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           MVD+ GRA L+ EA   +  MPF P+V IW +L++ACR+H  IEL E  +K++  L P+ 
Sbjct: 556 MVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPES 615

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
            G  VLLSNIY+   RW D   +R + K+ G+ K   CS IE+N  V+ F+  D+SH Q 
Sbjct: 616 TGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQL 675

Query: 613 DQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSC 672
            QI  KL E++ E+K  GY  +      D+E+EEK +++L+HSEKLA+ +G+++ K    
Sbjct: 676 SQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRP 735

Query: 673 IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           I + KNLRVC DCH  IK ++ +  REI +RD  RFHH+K+G C+C D+W
Sbjct: 736 ILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 200/432 (46%), Gaps = 36/432 (8%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +L+A  +++ L E  ++H    K    +D  V   L  +Y +C +++ AR +FD++    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           ++ W+ +I  Y  NG FD  ++L+  M    V P++     +L ACS    +  G  +H 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
                 +  D  + + L+  YA CG +  A+ LF  +  +++V   AM++G S  G  +D
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
                                          A++L  +MQ  G+ P+  T++ V+     
Sbjct: 194 -------------------------------AVQLIMQMQEEGICPNSSTIVGVLPTVGE 222

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
              L   + +H Y  + +F   + V   ++DMYAKC  L  AR++F+ M  RN +SW++M
Sbjct: 223 AKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAM 282

Query: 423 INAFAIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           I  +      + AL  F++M   +++DP  VT   VL AC+    +  GR++   +    
Sbjct: 283 IGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLG 342

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE--IELAE 539
           ++         ++ ++ +  ++ +A+   + M    + V + ++++ C  +G   + L+ 
Sbjct: 343 SVLDILLG-NTLLSMYAKCGVIDDAIRFFDEMN-PKDSVSFSAIVSGCVQNGNAAVALSI 400

Query: 540 FAAKQLLQLDPD 551
           F   QL  +DPD
Sbjct: 401 FRMMQLSGIDPD 412



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 5/202 (2%)

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           K   L ++ AC     L +A++IH +  KN    D  V + +  +Y  C  +  AR +F+
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            +   +VI W  +I A+A +G    A+  ++ M    + PN  T+  VL ACS    +++
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G EI  S    + +         +VD + +  +L EA  L  +M    +VV W +++A C
Sbjct: 128 GVEIH-SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGC 185

Query: 530 RVHGEIELAEFAAKQLLQLDPD 551
            ++G   L + A + ++Q+  +
Sbjct: 186 SLYG---LCDDAVQLIMQMQEE 204


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 250/654 (38%), Positives = 374/654 (57%), Gaps = 33/654 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F  +P   + + N  I   S +   + +++VF+ ML+ GL+ D  +   +L A+A 
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAE 226

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            +    GM +  L +K G  SD +V TGL+ +Y  CGK    R++FD++   D++ ++ M
Sbjct: 227 LQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAM 286

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY  N   +  + LF E+  S    +   L  ++       +L     +    +   +
Sbjct: 287 ISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGI 346

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            L                                  VSTA+ + Y R  +V+ AR +FD+
Sbjct: 347 ILQPS-------------------------------VSTALTTVYCRLNEVQFARQLFDE 375

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
             EK L  W+AMISGY +N     A+ LF EM +  + P+ VT+ S++SACA LG L   
Sbjct: 376 SPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSIG 434

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + +H  I       ++ V+ A++DMYAKCGS+  AR++F+ M  +NV++W +MI  + +H
Sbjct: 435 KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLH 494

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G  + AL  F +M    I P GVTF+ +LYACSH+GLV EG EIF SM N Y   P  EH
Sbjct: 495 GHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEH 554

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           Y CMVD+ GRA  L  ALE +E MP  P   +WG+L+ AC +H   E+A  A+K+L QLD
Sbjct: 555 YACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLD 614

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P++ G  VLLSNIY+ D+ +     +R+ +K+R + K   C+ IE++++ Y F + DRSH
Sbjct: 615 PENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSH 674

Query: 610 KQTDQIYEKLNEVISELKPAGYVPD-IHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
            Q   I+E L ++  +++ AGY  + + +AL D+EDEEK  ++  HSEKLA+ +GLIS+K
Sbjct: 675 PQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTK 734

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             + IRI+KNLRVC DCH   K +SK+  R IV+RD  RFHH+K+G+CSC DYW
Sbjct: 735 PGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 126/549 (22%), Positives = 248/549 (45%), Gaps = 43/549 (7%)

Query: 17  TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
           T +++ ++L+ + Q  AQ++   H  H   S + KL    F L      ++ +   +F++
Sbjct: 19  TLLNNATTLSQLLQIQAQLIL--HGIHYDLSSITKLTHKFFDL-----GAVAHVRQLFNK 71

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPILKAIARAEGLLE 135
           +  P   + N  IR  S +  PK ++ ++  +  +  L  D F++   + A +R E    
Sbjct: 72  VSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERV 131

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G+ +H      G  S+ FV + +V +Y    +   AR +FD M  RD V W+ MI G+ +
Sbjct: 132 GVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSR 191

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           N  F++ + +F +M    +  D   L+ +L+A +       G  +        +  D ++
Sbjct: 192 NSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYV 251

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            + LI++Y+ CG     + LFD++   +L+   AM+SGY+   + E A  +F +++    
Sbjct: 252 LTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQ 311

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
              S+ + G      P   L+L   +Q   +K               +G++ Q       
Sbjct: 312 RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLK---------------IGIILQPS----- 351

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
                      V+ A+  +Y +   ++ AR++F+    +++ SW +MI+ +  +G    A
Sbjct: 352 -----------VSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRA 400

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
           +  F +M  + + PN VT   +L AC+  G +  G+ +   + +E  +         +VD
Sbjct: 401 ISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSE-RLESNVYVSTALVD 458

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555
           ++ +   + EA +L + M    NVV W +++    +HG  + A     ++LQ      G 
Sbjct: 459 MYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTG- 516

Query: 556 LVLLSNIYA 564
           +  LS +YA
Sbjct: 517 VTFLSILYA 525



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 1/179 (0%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           +A  +F + P       N  I   + +     A+ +F +M+ + L+ +  +   IL A A
Sbjct: 368 FARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACA 426

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           +   L  G  VHGL       S+ +V T LV MY  CG I++AR +FD M  +++V W+ 
Sbjct: 427 QLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNA 486

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
           MI GY  +G   E L LF EM  S + P  +    IL ACS +G +S G  +   + +N
Sbjct: 487 MITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANN 545



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 103/244 (42%), Gaps = 42/244 (17%)

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L+  + A  LS    +   +I + +  D    + L   + + G +   + LF+KV     
Sbjct: 18  LTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVS---- 73

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM-QV 343
                                      + DL  ++ +I G+++N  P+ ++ L+  + + 
Sbjct: 74  ---------------------------KPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKK 106

Query: 344 CGMKPDKVTMLSVISACAHL-----GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
             ++PD  T    ISA + L     GVL  A  I      +    +L V +AI+D+Y K 
Sbjct: 107 TNLRPDNFTYAFAISAASRLEDERVGVLLHAHSI-----VDGVASNLFVGSAIVDLYFKF 161

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
              E AR+VF+ M  R+ + W +MI+ F+ +    +++  F  M D  +  +  T   VL
Sbjct: 162 TRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVL 221

Query: 459 YACS 462
            A +
Sbjct: 222 TAVA 225


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/683 (37%), Positives = 398/683 (58%), Gaps = 18/683 (2%)

Query: 58  SLPTTTPSSLYYAL--------------SIFSQIPAPPSRVSNKFIRAISWSHRPKHALK 103
           SLPT  PS L   L               +F  IP P     +  I A++       A+K
Sbjct: 5   SLPTNIPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIK 64

Query: 104 VFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYG 163
           ++  +   G+  D   F    KA A +   L   +VH   T+ G  SD FV   L+  YG
Sbjct: 65  IYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYG 124

Query: 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSK 223
            C  +  AR +FD +  RD+V W+ +   Y + G   + +++F EM  S V+P+ M +S 
Sbjct: 125 KCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSS 184

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           IL AC+   +L  G+ +H F + + + ++  + S L+++YA C  +  A+ +FD +  ++
Sbjct: 185 ILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRD 244

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFN 339
           +V    +++ Y +  + E    +F +M    V  D   W+A+I G  EN   +EA+++F 
Sbjct: 245 VVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFR 304

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           +MQ  G KP+++T+ S++ AC+    L   + IH Y+ ++   GDL    A++ MYAKCG
Sbjct: 305 KMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCG 364

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
            L  +R VF+ MRR++V++W +MI A A+HG+ + AL  F+KM    + PN VTF GVL 
Sbjct: 365 DLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLS 424

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
            CSH+ LV+EG +IF SM  ++ + P   HY C+VD++ RA  L EA + ++ MP  P  
Sbjct: 425 GCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTA 484

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
             WG+L+AACRV+  +ELA+ +AK+L +++P++ G  V L NI    K W +  ++R  M
Sbjct: 485 SAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILM 544

Query: 580 KERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
           KERGI K   CS +++ N+V+ F+  D+S+ ++D+IY  L+E++ ++K AGY PD    L
Sbjct: 545 KERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVL 604

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
            D++ EEK E +  HSEKLA+ +G+++    S IR+ KNLR+C DCHN IK +SKV    
Sbjct: 605 QDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVI 664

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           IV+RD  RFHH+K+G CSCKD W
Sbjct: 665 IVVRDSLRFHHFKNGNCSCKDLW 687


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  500 bits (1288), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 260/601 (43%), Positives = 363/601 (60%), Gaps = 2/601 (0%)

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA--CGKILDARLMFDKMSYR 181
           L  + R   + E  Q+HG   K G   D    + L+    +   G +  AR +FD++   
Sbjct: 22  LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRP 81

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           +   W+ MI GY  +   +E L L+  M   +V  +      +L ACS        + +H
Sbjct: 82  NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIH 141

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
             II      + +  ++L+ +Y+  G +  A+ LFD+V  ++ V   +M+ GY++ G++E
Sbjct: 142 AHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIE 201

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
            A  IF+ M E+++I W++MISG      P+EAL LF+ MQ  G+K D V ++S + ACA
Sbjct: 202 MAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACA 261

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
            LGVLDQ + IH YI K+    D  +   +IDMYAKCG LE A EVF +M  + V  WT+
Sbjct: 262 DLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTA 321

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI+ +AIHG  R AL +F KM+   ++PN +TF G+L ACSHAGLV E + +F SM   +
Sbjct: 322 MISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIH 381

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
              P  EHYGCMVDL GRA LL+EA EL+E MP  PN  IWG+L+ AC +HG +EL +  
Sbjct: 382 GFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQI 441

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
            K L+Q+DP H G  + L++I+A    W     +R+ MKE+G+ K   CS I +N   +E
Sbjct: 442 GKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHE 501

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           FL  D SH Q  +I   L +++  L+  GY P +   L+DLED+EK   I  HSEKLA+ 
Sbjct: 502 FLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVT 561

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           +GLIS+K    IRIVKNLRVCEDCH  IKL+SKVYAREI++RDRTRFH +KDG C+C DY
Sbjct: 562 FGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDY 621

Query: 722 W 722
           W
Sbjct: 622 W 622



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/469 (28%), Positives = 224/469 (47%), Gaps = 80/469 (17%)

Query: 4   LSQPTKPLTLPTSTA-----ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFS 58
           L  PT  L+  ++ A     +  CS++  ++Q H Q+LK          L+L  +  S  
Sbjct: 5   LCTPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLK--------TGLILDEIPASKL 56

Query: 59  LP---TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI 115
           L    +    SL YA ++F +I  P + + N  IR  S S  P+ AL ++  ML   +  
Sbjct: 57  LAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPH 116

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           + ++FP +LKA +      E  Q+H    K+GFGS+ +    L+ +Y   G I  ARL+F
Sbjct: 117 NAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLF 176

Query: 176 DKMSYRDIVPWSVMIDGYFQNG-------LFD------------------------EVLN 204
           D++  RD V W+ MIDGY + G       +F+                        E LN
Sbjct: 177 DQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALN 236

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           LF  M+ + ++ D + L   L AC+  G L  G+ +H +I  + + +D  L   LI MYA
Sbjct: 237 LFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYA 296

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
            CG ++ A  +F K+  K + V TAM+SGY+  G+                         
Sbjct: 297 KCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGR------------------------- 331

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK-NAFGG 383
                  +EAL+ F +MQ  G++P+++T   +++AC+H G++ +A+ +   +++ + F  
Sbjct: 332 ------GREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKP 385

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD 431
            +     ++D+  + G L+ A E+ E M  + N   W +++NA  IHG+
Sbjct: 386 SIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN 434


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  500 bits (1288), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/654 (38%), Positives = 374/654 (57%), Gaps = 33/654 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F  +P   + + N  I   S +   + +++VF+ ML+ GL+ D  +   +L A+A 
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAE 226

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            +    GM +  L +K G  SD +V TGL+ +Y  CGK    R++FD++   D++ ++ M
Sbjct: 227 LQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAM 286

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY  N   +  + LF E+  S    +   L  ++       +L     +    +   +
Sbjct: 287 ISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGI 346

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            L                                  VSTA+ + Y R  +V+ AR +FD+
Sbjct: 347 ILQPS-------------------------------VSTALTTVYCRLNEVQFARQLFDE 375

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
             EK L  W+AMISGY +N     A+ LF EM +  + P+ VT+ S++SACA LG L   
Sbjct: 376 SPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSIG 434

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + +H  I       ++ V+ A++DMYAKCGS+  AR++F+ M  +NV++W +MI  + +H
Sbjct: 435 KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLH 494

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G  + AL  F +M    I P GVTF+ +LYACSH+GLV EG EIF SM N Y   P  EH
Sbjct: 495 GHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEH 554

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           Y CMVD+ GRA  L  ALE +E MP  P   +WG+L+ AC +H   E+A  A+K+L QLD
Sbjct: 555 YACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLD 614

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P++ G  VLLSNIY+ D+ +     +R+ +K+R + K   C+ IE++++ Y F + DRSH
Sbjct: 615 PENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSH 674

Query: 610 KQTDQIYEKLNEVISELKPAGYVPD-IHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
            Q   I+E L ++  +++ AGY  + + +AL D+EDEEK  ++  HSEKLA+ +GLIS+K
Sbjct: 675 PQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTK 734

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             + IRI+KNLRVC DCH   K +SK+  R IV+RD  RFHH+K+G+CSC DYW
Sbjct: 735 PGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 126/549 (22%), Positives = 247/549 (44%), Gaps = 43/549 (7%)

Query: 17  TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
           T +++ ++L+ + Q  AQ++   H  H   S + KL    F L      ++ +   +F++
Sbjct: 19  TLLNNATTLSQLLQIQAQLIL--HGIHYDLSSITKLTHKFFDL-----GAVAHVRQLFNK 71

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLN-EGLTIDRFSFPPILKAIARAEGLLE 135
           +  P   + N  IR  S +  PK ++ ++  +     L  D F++   + A +R E    
Sbjct: 72  VSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERV 131

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G+ +H      G  S+ FV + +V +Y    +   AR +FD M  RD V W+ MI G+ +
Sbjct: 132 GVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSR 191

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           N  F++ + +F +M    +  D   L+ +L+A +       G  +        +  D ++
Sbjct: 192 NSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYV 251

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            + LI++Y+ CG     + LFD++   +L+   AM+SGY+   + E A  +F +++    
Sbjct: 252 LTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQ 311

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
              S+ + G      P   L+L   +Q   +K               +G++ Q       
Sbjct: 312 RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLK---------------IGIILQPS----- 351

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
                      V+ A+  +Y +   ++ AR++F+    +++ SW +MI+ +  +G    A
Sbjct: 352 -----------VSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRA 400

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
           +  F +M  + + PN VT   +L AC+  G +  G+ +   + +E  +         +VD
Sbjct: 401 ISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSE-RLESNVYVSTALVD 458

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555
           ++ +   + EA +L + M    NVV W +++    +HG  + A     ++LQ      G 
Sbjct: 459 MYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTG- 516

Query: 556 LVLLSNIYA 564
           +  LS +YA
Sbjct: 517 VTFLSILYA 525



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 1/179 (0%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           +A  +F + P       N  I   + +     A+ +F +M+ + L+ +  +   IL A A
Sbjct: 368 FARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACA 426

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           +   L  G  VHGL       S+ +V T LV MY  CG I++AR +FD M  +++V W+ 
Sbjct: 427 QLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNA 486

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
           MI GY  +G   E L LF EM  S + P  +    IL ACS +G +S G  +   + +N
Sbjct: 487 MITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANN 545


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  500 bits (1288), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 254/626 (40%), Positives = 389/626 (62%), Gaps = 2/626 (0%)

Query: 99  KHALKVFLKML-NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           K A+ +F +M+ +E +T +  +   ++ A A+ E L  G +V+      G   +  + + 
Sbjct: 217 KDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSA 276

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           LV MY  C  I  A+ +FD+    ++   + M   Y + GL  E L +F  M  S V PD
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPD 336

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
            + +   +S+CS+  N+ +G++ H +++ N      ++ + LI MY  C   D A  +FD
Sbjct: 337 RISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFD 396

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
           ++  K +V   ++V+GY   G+V+ A   F+ M EK+++ W+ +ISG  + +  +EA+++
Sbjct: 397 RMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEV 456

Query: 338 FNEMQVC-GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           F  MQ   G+  D VTM+S+ SAC HLG LD A+ I+ YI+KN    D+R+   ++DM++
Sbjct: 457 FCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFS 516

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           +CG  ESA  +F  +  R+V +WT+ I A A+ G+A  A+  F+ M ++ + P+GV F+G
Sbjct: 517 RCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVG 576

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
            L ACSH GLV +G+EIF SM   + + P+  HYGCMVDL GRA LL EA++L+E MP  
Sbjct: 577 ALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPME 636

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
           PN VIW SL+AACRV G +E+A +AA+++  L P+  G+ VLLSN+YA   RW D+ ++R
Sbjct: 637 PNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVR 696

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
            SMKE+G+ K    S I++  + +EF + D SH +   I   L+EV       G+VPD+ 
Sbjct: 697 LSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLS 756

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
           + L+D++++EK  ++  HSEKLA+ YGLISS K + IRIVKNLRVC DCH+F K  SKVY
Sbjct: 757 NVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVY 816

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
            REI++RD  RFH+ + G CSC D+W
Sbjct: 817 NREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 143/488 (29%), Positives = 250/488 (51%), Gaps = 45/488 (9%)

Query: 2   STLSQPT----KPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSF 57
           +T ++P+       T  T +++ +C ++  +K  H  + K      +  S + KL+  S 
Sbjct: 18  TTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTK--QGLDNDVSTITKLVARSC 75

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPS-RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTID 116
            L T    SL +A  +F    +  +  + N  IR  + S     A+ +FL+M+N G++ D
Sbjct: 76  ELGTR--ESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPD 133

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
           +++FP  L A A++     G+Q+HGL  K+G+  D FVQ  LV  Y  CG++  AR +FD
Sbjct: 134 KYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFD 193

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLS 235
           +MS R++V W+ MI GY +     + ++LF  M +   V P+ + +  ++SAC++  +L 
Sbjct: 194 EMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLE 253

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            GE V+ FI ++ + ++  + S L+ MY  C  +D+AK LFD+    NL +  AM S Y 
Sbjct: 254 TGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYV 313

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           R G                                 +EAL +FN M   G++PD+++MLS
Sbjct: 314 RQGLT-------------------------------REALGVFNLMMDSGVRPDRISMLS 342

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
            IS+C+ L  +   +  H Y+ +N F     + NA+IDMY KC   ++A  +F+RM  + 
Sbjct: 343 AISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKT 402

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V++W S++  +  +G+   A   F  M +++I    V++  ++       L +E  E+F 
Sbjct: 403 VVTWNSIVAGYVENGEVDAAWETFETMPEKNI----VSWNTIISGLVQGSLFEEAIEVFC 458

Query: 476 SMTNEYNI 483
           SM ++  +
Sbjct: 459 SMQSQEGV 466


>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
          Length = 594

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/487 (49%), Positives = 343/487 (70%), Gaps = 3/487 (0%)

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
           R + P +L+AIA A  L      HGL  ++G   D FV T LV  Y ACG++ DAR +FD
Sbjct: 69  RRALPSLLRAIAFARSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARRVFD 128

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
            M  RD+V W VM+D Y Q   ++E L LF  MK S V PD+++++ +LS C+   NL +
Sbjct: 129 GMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVIIATVLSTCAHTRNLRF 188

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G+A+H +++ ++  +DA +   L+ MYA+C  M+MA+ L+++V  K +V+ST MV GY++
Sbjct: 189 GKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAK 248

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
            G+VE A  IF+ M  KD++ WSAMI+GYAE++ P EAL LF++MQ  G+KPD++TMLSV
Sbjct: 249 NGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSV 308

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           ISACA++G L++A+ IH +++ ++    L + NA+IDM++KCGSL  A +VF  M ++NV
Sbjct: 309 ISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNV 368

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           ++WTS+I A A+HGD R+AL  F  MK E I PNGVTF+G+LYAC HAGLV+EGR +F  
Sbjct: 369 VTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKI 428

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           M  +Y I P +EHYGCMVDL GRA LL +A +L+++M   PNVVIWGSL+AACR+HG++E
Sbjct: 429 MVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLE 488

Query: 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE-LRKSMKERGILKERACSRIEM 595
           L  FAAK++L+LDP+H GA VLLSNIYA+   W DV E L K   E+   KE A   +E+
Sbjct: 489 LGTFAAKKILELDPNHGGAQVLLSNIYAEYGNWNDVKEGLSKKDYEKK--KELAARFLEI 546

Query: 596 NNEVYEF 602
           + ++  F
Sbjct: 547 SADLSNF 553



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 9/200 (4%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A SIF+ +PA      +  I   + S +P  AL +F  M   G+  D  +   ++ A A 
Sbjct: 255 AHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACAN 314

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L +   +H             +   L+ M+  CG +  A  +F+ M  +++V W+ +
Sbjct: 315 VGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSI 374

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I     +G     L LFE MK   ++P+ +    +L AC  AG +  G  + + ++    
Sbjct: 375 ITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQ--- 431

Query: 250 ALDAHLQSTLITMYANCGCM 269
                 Q  +  M+ + GCM
Sbjct: 432 ------QYRIEPMHEHYGCM 445


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/543 (43%), Positives = 348/543 (64%), Gaps = 33/543 (6%)

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAV 240
           ++  W+ +I GY + G      +L+ EM++S  VEPD      ++ A +   ++  GE +
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H  +I +      ++Q++L+ +YANCG                                V
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCG-------------------------------DV 172

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
             A  +FD+M EKDL+ W+++I+G+AEN  P+EAL L+ EM   G+KPD  T++S++SAC
Sbjct: 173 ASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSAC 232

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           A +G L   +R+H+Y+ K     +L  +N ++D+YA+CG +E A+ +F+ M  +N +SWT
Sbjct: 233 AKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292

Query: 421 SMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           S+I   A++G  + A+  F  M+  E + P  +TF+G+LYACSH G+V EG E F  M  
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE 352

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
           EY I P+ EH+GCMVDL  RA  +++A E +++MP  PNVVIW +L+ AC VHG+ +LAE
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAE 412

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
           FA  Q+LQL+P+H G  VLLSN+YA ++RW DV ++RK M   G+ K    S +E+ N V
Sbjct: 413 FARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRV 472

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
           +EFL  D+SH Q+D IY KL E+   L+  GYVP I +  VD+E+EEK   +++HSEK+A
Sbjct: 473 HEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIA 532

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           + + LIS+ + S I +VKNLRVC DCH  IKLVSKVY REIV+RDR+RFHH+K+G CSC+
Sbjct: 533 IAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQ 592

Query: 720 DYW 722
           DYW
Sbjct: 593 DYW 595



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 223/435 (51%), Gaps = 45/435 (10%)

Query: 23  SSLTHMKQTHAQILKLSHSHHSQNSLLLK-LLLTSFSLPTTTPSSLYYALSIFSQIPAPP 81
           SS+T ++Q HA    + H     ++ L K L+    SLP+  P S  YA  +FS+I  P 
Sbjct: 28  SSITKLRQIHA--FSIRHGVSISDAELGKHLIFYLVSLPSPPPMS--YAHKVFSKIEKPI 83

Query: 82  SR-VSNKFIRAISWSHRPKHALKVFLKMLNEGLT-IDRFSFPPILKAIARAEGLLEGMQV 139
           +  + N  IR  +       A  ++ +M   GL   D  ++P ++KA+     +  G  +
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
           H +  + GFGS  +VQ  L+ +Y  CG +  A  +FDKM  +D+V W+ +I+G+ +NG  
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203

Query: 200 DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259
           +E L L+ EM    ++PD   +  +LSAC++ G L+ G+ VH ++I   +  + H  + L
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVL 263

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWS 319
           + +YA CG ++ AK LFD+++ KN V                                W+
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSV-------------------------------SWT 292

Query: 320 AMISGYAENNHPQEALKLFNEMQVC-GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           ++I G A N   +EA++LF  M+   G+ P ++T + ++ AC+H G++ +    +    +
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE-YFRRMR 351

Query: 379 NAFGGDLRVNN--AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNA 435
             +  + R+ +   ++D+ A+ G ++ A E  + M  + NV+ W +++ A  +HGD+   
Sbjct: 352 EEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD-- 409

Query: 436 LIFFNKMKDESIDPN 450
           L  F +++   ++PN
Sbjct: 410 LAEFARIQILQLEPN 424


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/666 (36%), Positives = 389/666 (58%), Gaps = 5/666 (0%)

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSF 120
           +    L  A  +F +IP P        I A++   R   A++ +    ++  +  D+   
Sbjct: 22  SNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLL 81

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
             + KA A    ++   +VH    + GF SD  +   L+ MYG C     ARL+F+ M +
Sbjct: 82  LSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPF 141

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           RD++ W+ M   Y   GL  E L  F +M ++   P+ + +S IL AC+   +L  G  V
Sbjct: 142 RDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREV 201

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H F++ N +  +  + S L+ MYA+C  +  A+ +FD +  ++ V    +++ Y    + 
Sbjct: 202 HGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKEC 261

Query: 301 EDARLIFDQMVEK----DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
           E    +F +M+ +    +   W+A+I G  +N   ++AL++ + MQ  G KP+++T+ SV
Sbjct: 262 EKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSV 321

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           + AC +L  L   ++IH YI ++ F  DL    A++ MYAKCG LE +R VF  M +R+ 
Sbjct: 322 LPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDT 381

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           +SW +MI A ++HG+   AL+ F +M D  + PN VTF GVL  CSH+ LVDEG  IF S
Sbjct: 382 VSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDS 441

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           M+ ++++ P  +H+ CMVD+  RA  L EA E ++ MP  P    WG+L+  CRV+  +E
Sbjct: 442 MSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVE 501

Query: 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMN 596
           L   AA +L +++ D+ G  VLLSNI    K W +  E RK M++RG+ K   CS I++ 
Sbjct: 502 LGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVR 561

Query: 597 NEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSE 656
           N V+ F+  D+S+ Q+D+IY  L+ +  +++ AGY+P+    L D++ EEK EV+  HSE
Sbjct: 562 NRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSE 621

Query: 657 KLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVC 716
           KLA+ +G+++   +S IR+ KNLR+C DCHN IK ++K+   +I++RD  RFHH++DG+C
Sbjct: 622 KLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLC 681

Query: 717 SCKDYW 722
           SC+D+W
Sbjct: 682 SCQDFW 687



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 164/337 (48%), Gaps = 32/337 (9%)

Query: 144 TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
           +KL     P +    + +Y   G +  AR +FDK+   D+  W+++I    ++G   E +
Sbjct: 3   SKLPTSLPPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAI 62

Query: 204 NLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
             + + +  N VEPD+++L  +  AC+   ++   + VHE  I      D  L + LI M
Sbjct: 63  QYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDM 122

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           Y  C C + A+ +F+ +  ++++  T+M S Y   G +                      
Sbjct: 123 YGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLL---------------------- 160

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
                    +EAL  F +M + G +P+ VT+ S++ AC  L  L   + +H ++ +N  G
Sbjct: 161 ---------REALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMG 211

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
           G++ V++A+++MYA C S+  A+ VF+ M RR+ +SW  +I A+ ++ +    L  F +M
Sbjct: 212 GNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRM 271

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
             E +  N  ++  V+  C   G  ++  E+ + M N
Sbjct: 272 MSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQN 308



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 130/245 (53%), Gaps = 5/245 (2%)

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM--QVCGMKPDKV 351
           YS +G ++ AR +FD++ + DL  W+ +IS   ++    EA++ +N+   + C ++PDK+
Sbjct: 21  YSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNC-VEPDKL 79

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
            +LSV  ACA L  +  A+R+H    +  F  D+ + NA+IDMY KC   E AR VFE M
Sbjct: 80  LLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGM 139

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471
             R+VISWTSM + +   G  R AL  F KM      PN VT   +L AC+    +  GR
Sbjct: 140 PFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGR 199

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
           E+   +     +         +V+++     +R+A  + ++M    + V W  L+ A  +
Sbjct: 200 EVHGFVVRN-GMGGNVFVSSALVNMYASCLSIRQAQLVFDSMS-RRDTVSWNVLITAYFL 257

Query: 532 HGEIE 536
           + E E
Sbjct: 258 NKECE 262



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 73/143 (51%), Gaps = 4/143 (2%)

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDP 449
            I +Y+  G L+ AR +F+++ + ++ +WT +I+A   HG +  A+ ++N  + ++ ++P
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 450 NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
           + +  + V  AC+    V   + +       +           ++D++G+      A  +
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAI-RFGFCSDVLLGNALIDMYGKCRCSEGARLV 135

Query: 510 VETMPFAPNVVIWGSLMAACRVH 532
            E MPF  +V+ W S MA+C V+
Sbjct: 136 FEGMPFR-DVISWTS-MASCYVN 156


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/653 (39%), Positives = 377/653 (57%), Gaps = 32/653 (4%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P       N  I   + +   K AL++ L+M  EG   D  +   IL A+A 
Sbjct: 229 AYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVAD 288

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G  +HG   + GF S   V T LV MY  CG +  ARL+FD+M+ + +V W+ M
Sbjct: 289 VGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSM 348

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           IDGY QNG     + +F++M    VE   + +   L AC+  G++  G  VH+ +    +
Sbjct: 349 IDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLEL 408

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             D  + ++LI+MY                               S+  +V+ A  IF+ 
Sbjct: 409 GSDVSVMNSLISMY-------------------------------SKCKRVDIAAEIFEN 437

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           +  K L+ W+AMI GYA+N    EA+  F +MQ+  +KPD  TM+SVI A A L VL QA
Sbjct: 438 LQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQA 497

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + IH  + +     ++ V  A++DMYAKCG++ +AR++F+ M  R+V +W +MI+ +  H
Sbjct: 498 KWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTH 557

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G  + AL  F KMK E I PN VTF+ VL ACSH+GLV+EG + F SM  +Y + P  +H
Sbjct: 558 GLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDH 617

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           YG MVDL GRAN L EA + ++ MP  P + ++G+++ ACR+H  +EL E AA ++  LD
Sbjct: 618 YGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLD 677

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           PD  G  VLL+NIYA    W  V  +R +M+++GI K    S +E+ NEV+ F +   SH
Sbjct: 678 PDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSH 737

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
            Q  +IY  L  + + +K AGY+PD +S + D+ED  K +++  HSEKLA+ + L+++  
Sbjct: 738 PQAKKIYAFLETLGNRIKAAGYMPDTNS-VHDVEDVVKEQLLNSHSEKLAIAFSLLNTSP 796

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + I + KNLRVC DCHN  K +S V  REI++RD  RFHH+KDG CSC DYW
Sbjct: 797 GTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 202/409 (49%), Gaps = 35/409 (8%)

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           K G  S+   QT LV ++   G + +A  +F  +  +    +  M+ GY +N   D+ ++
Sbjct: 102 KNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVS 161

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
            F  M+   V P     + +L  C    +L  G+ +H  +I N  A +    + ++ MYA
Sbjct: 162 FFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYA 221

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
            C                                 VE+A  +FD+M E+DL+CW+ +ISG
Sbjct: 222 KCRL-------------------------------VEEAYKMFDRMPERDLVCWNTIISG 250

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           YA+N   + AL+L   MQ  G +PD +T++S++ A A +G L   + IH Y  +  F   
Sbjct: 251 YAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESF 310

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
           + V+ A++DMY+KCGS+ +AR +F+RM  + V+SW SMI+ +  +GD   A+  F KM D
Sbjct: 311 VNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMD 370

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
           E ++   VT +G L+AC+  G V++GR +   + ++  +         ++ ++ +   + 
Sbjct: 371 EQVEMTNVTVMGALHACADLGDVEQGRFVH-KLLDQLELGSDVSVMNSLISMYSKCKRVD 429

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELA--EFAAKQLLQLDPD 551
            A E+ E +     +V W +++     +G I  A   F   QL  + PD
Sbjct: 430 IAAEIFENLQHK-TLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPD 477


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/770 (34%), Positives = 417/770 (54%), Gaps = 78/770 (10%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83
           SLT  K+ H   LK  ++ ++ +S+L KL     S      + +  A  +F +IP P   
Sbjct: 23  SLTEAKKIHQHFLK--NTSNADSSVLHKLTRLYLSC-----NQVVLARRLFDEIPNPSVI 75

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
           + N+ IRA +W+     A+ ++  ML+ G+  +++++P +LKA +    + +G+++H   
Sbjct: 76  LWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHA 135

Query: 144 TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
              G  SD FV T LV  Y  CG +++A+ +F  MS+RD+V W+ MI G    GL D+ +
Sbjct: 136 KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAV 195

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            L  +M+   + P+   +  +L     A  L +G+A+H + +  +      + + L+ MY
Sbjct: 196 QLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMY 255

Query: 264 ANC-------------------------------GCMDMAKGLFDKVLLKN--------- 283
           A C                                CM  A  LFD+++LK+         
Sbjct: 256 AKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTL 315

Query: 284 -------------------------------LVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
                                          +++   ++S Y++ G ++DA   FD M  
Sbjct: 316 GSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNP 375

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           KD + +SA++SG  +N +   AL +F  MQ+ G+ PD  TML V+ AC+HL  L      
Sbjct: 376 KDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCS 435

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H Y+    F  D  + NA+IDMY+KCG +  AREVF RM R +++SW +MI  + IHG  
Sbjct: 436 HGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLG 495

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
             AL  F+ +    + P+ +TFI +L +CSH+GLV EGR  F +M+ +++I P+ EH  C
Sbjct: 496 MEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCIC 555

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           MVD+ GRA L+ EA   +  MPF P+V IW +L++ACR+H  IEL E  +K++  L P+ 
Sbjct: 556 MVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPES 615

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
            G  VLLSNIY+   RW D   +R + K+ G+ K   CS IE+N  V+ F+  D+SH Q 
Sbjct: 616 TGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQL 675

Query: 613 DQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSC 672
            QI  KL E++ E+K  GY  +      D+E+EEK +++L+HSEKLA+ +G+++ K    
Sbjct: 676 SQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRP 735

Query: 673 IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           I + KNLRVC DCH  IK ++ +  REI +RD  RFHH+K+G C+C D+W
Sbjct: 736 ILVTKNLRVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 199/432 (46%), Gaps = 36/432 (8%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +L+A  +++ L E  ++H    K    +D  V   L  +Y +C +++ AR +FD++    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           ++ W+ +I  Y  NG FD  ++L+  M    V P++     +L ACS    +  G  +H 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
                 +  D  + + L+  YA CG +  A+ LF  +  +++V   AM++G S  G  +D
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
                                          A++L  +MQ  G+ P+  T++ V+     
Sbjct: 194 -------------------------------AVQLIMQMQEEGICPNSSTIVGVLPTVGE 222

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
              L   + +H Y  + +F   + V   ++DMYAKC  L  AR++F+ M  RN +SW++M
Sbjct: 223 AKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAM 282

Query: 423 INAFAIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           I  +      + AL  F++M   +++DP  VT   VL AC+    +  GR++   +    
Sbjct: 283 IGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLG 342

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE--IELAE 539
            +         ++ ++ +  ++ +A+   + M    + V + ++++ C  +G   + L+ 
Sbjct: 343 XVLDILLG-NTLLSMYAKCGVIDDAIRFFDXMN-PKDSVSFSAIVSGCVQNGNAAVALSI 400

Query: 540 FAAKQLLQLDPD 551
           F   QL  +DPD
Sbjct: 401 FRMMQLSGIDPD 412



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 5/202 (2%)

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           K   L ++ AC     L +A++IH +  KN    D  V + +  +Y  C  +  AR +F+
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            +   +VI W  +I A+A +G    A+  ++ M    + PN  T+  VL ACS    +++
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G EI  S    + +         +VD + +  +L EA  L  +M    +VV W +++A C
Sbjct: 128 GVEIH-SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGC 185

Query: 530 RVHGEIELAEFAAKQLLQLDPD 551
            ++G   L + A + ++Q+  +
Sbjct: 186 SLYG---LCDDAVQLIMQMQEE 204


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/617 (38%), Positives = 367/617 (59%), Gaps = 33/617 (5%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGA--CGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           Q+H L  + G   D +V   L+  Y          A  +F  +   ++  W+++I G  +
Sbjct: 51  QLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLE 110

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           N    + +  +  M + +  P++     +  ACS A  +  G  +H  ++ + +  D H+
Sbjct: 111 NNKLFKAIYFYGRMVI-DARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHI 169

Query: 256 QSTLITMYAN------------------------------CGCMDMAKGLFDKVLLKNLV 285
           +S  I MYA+                              CG ++ AKGLF ++ +KN+ 
Sbjct: 170 KSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIG 229

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
               M++G ++ G + DAR +FD+M E+D I WS+M+ GY      +EAL++F +MQ   
Sbjct: 230 SWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREE 289

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
            +P +  + SV++AC+++G +DQ + +H Y+ +N+   D  +  A++DMYAKCG L+   
Sbjct: 290 TRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGW 349

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
           EVFE M+ R + +W +MI   AIHG A +AL  F+K+++  + PNG+T +GVL AC+HAG
Sbjct: 350 EVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAG 409

Query: 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
            VD+G  IF +M   Y + P+ EHYGCMVDL GR+ L  EA +L+ +MP  PN  +WG+L
Sbjct: 410 FVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGAL 469

Query: 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585
           + ACR+HG  +LAE   K LL+L+P + G  VLLSNIYAK  R+ DV ++RK MK RGI 
Sbjct: 470 LGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIK 529

Query: 586 KERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDE 645
                S +++N  V+EF   D SH Q  +IY KL  +   L+ AG+ PD    L D+++E
Sbjct: 530 TVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEE 589

Query: 646 EKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDR 705
           EK   + +HSEKLA+ +GLI++     I IVKNLRVC+DCH+  KL+S+++ REI++RDR
Sbjct: 590 EKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDR 649

Query: 706 TRFHHYKDGVCSCKDYW 722
            R+HH+K+G CSCKD+W
Sbjct: 650 VRYHHFKNGTCSCKDFW 666



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/511 (25%), Positives = 223/511 (43%), Gaps = 120/511 (23%)

Query: 2   STLSQPTKPL-----------TLPTSTAIS-----SCSSLTHMKQTHAQILKLSHSHHSQ 45
           S L  P KP+            LP  T +      S +SL ++ Q HA +L+   S H Q
Sbjct: 7   SHLPSPFKPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHALVLR---SGHFQ 63

Query: 46  NSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVF 105
           +  +   LL  ++ P    S+  +AL +FS IP P   + N  I+    +++   A+  +
Sbjct: 64  DHYVSGALLKCYANPHF--SNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFY 121

Query: 106 LKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC 165
            +M+ +    ++F++P + KA + A+ + EG Q+HG   K G GSD  +++  + MY + 
Sbjct: 122 GRMVIDARP-NKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASF 180

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV----------- 214
           G++ DAR MF      D+V W+ MIDGY + G+ +    LF +M + N+           
Sbjct: 181 GRLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLA 239

Query: 215 ----------------EPDEMVLSKILSACSRAGN------------------------- 233
                           E DE+  S ++     AG                          
Sbjct: 240 KGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSS 299

Query: 234 ----------LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
                     +  G  VH ++  N++ LDA L + L+ MYA CG +DM   +F+++  + 
Sbjct: 300 VLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKERE 359

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           +    AM+ G +  G+ ED                               AL+LF+++Q 
Sbjct: 360 IFTWNAMIGGLAIHGRAED-------------------------------ALELFSKLQE 388

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD--LRVNNAIIDMYAKCGSL 401
             MKP+ +T++ V++ACAH G +D+  RI   + +  +G D  L     ++D+  + G  
Sbjct: 389 GRMKPNGITLVGVLTACAHAGFVDKGLRIFQTM-REFYGVDPELEHYGCMVDLLGRSGLF 447

Query: 402 ESAREVFERM-RRRNVISWTSMINAFAIHGD 431
             A ++   M  + N   W +++ A  IHG+
Sbjct: 448 SEAEDLINSMPMKPNAAVWGALLGACRIHGN 478



 Score = 48.1 bits (113), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 117/270 (43%), Gaps = 22/270 (8%)

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK--CGSLESAREVFERMRRRNVISWTSMI 423
           L    ++H  + ++    D  V+ A++  YA     + + A +VF  +   NV  W  +I
Sbjct: 46  LQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVI 105

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
                +     A+ F+ +M  ++  PN  T+  +  ACS A  V EGR+I   +  ++ I
Sbjct: 106 KGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVV-KHGI 163

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
                     + ++     L +A ++  +     +VV W +++      G +E    AAK
Sbjct: 164 GSDVHIKSAGIQMYASFGRLEDARKMFYSG--ESDVVCWNTMIDGYLKCGVLE----AAK 217

Query: 544 QLL-QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
            L  Q+   + G+  ++ N  AK     D  +L   M ER          I  ++ V  +
Sbjct: 218 GLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSER--------DEISWSSMVDGY 269

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYV 632
           ++A R +K+  +I++++     E +P  ++
Sbjct: 270 ISAGR-YKEALEIFQQMQR--EETRPGRFI 296


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/694 (37%), Positives = 390/694 (56%), Gaps = 39/694 (5%)

Query: 29   KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKF 88
            K+ H  + KL     S N+++  L+ T F         +  A  +F ++        N  
Sbjct: 573  KRIHGCVYKLGFG--SYNTVVNSLIATYFK-----SGEVDSAHKLFDELGDRDVVSWNSM 625

Query: 89   IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148
            I     +     AL+ F++ML   + +D  +    + A A    L  G  +HG G K  F
Sbjct: 626  ISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACF 685

Query: 149  GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
              +      L+ MY  CG + DA   F+KM  + +V W+ +I  Y + GL+D+ + LF E
Sbjct: 686  SREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYE 745

Query: 209  MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
            M+   V PD   ++ +L AC+   +L  G  VH +I  NN+AL   + + L+ MYA C  
Sbjct: 746  MESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKC-- 803

Query: 269  MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
                                         G +E+A L+F Q+  KD++ W+ MI GY++N
Sbjct: 804  -----------------------------GSMEEAYLVFSQIPVKDIVSWNTMIGGYSKN 834

Query: 329  NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
            + P EALKLF EMQ    +PD +TM  ++ AC  L  L+  + IH  I +N +  +L V 
Sbjct: 835  SLPNEALKLFAEMQK-ESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVA 893

Query: 389  NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
            NA+IDMY KCGSL  AR +F+ +  +++I+WT MI+   +HG    A+  F KM+   I 
Sbjct: 894  NALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIK 953

Query: 449  PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
            P+ +TF  +LYACSH+GL++EG   F SM +E N+ PK EHY CMVDL  R   L +A  
Sbjct: 954  PDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYN 1013

Query: 509  LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
            L+ETMP  P+  IWG+L+  CR+H ++ELAE  A+ + +L+PD+ G  VLL+NIYA+ ++
Sbjct: 1014 LIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEK 1073

Query: 569  WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
            W++V +LR+ + +RG+ K   CS IE+  +   F++AD +H Q   I+  LN +  ++K 
Sbjct: 1074 WEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKN 1133

Query: 629  AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
             G+ P +  AL++  D EK   +  HSEKLA+ +G+++      IR+ KNLRVC+DCH  
Sbjct: 1134 EGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEM 1193

Query: 689  IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             K +SK   REI++RD  RFHH+KDG CSC+D+W
Sbjct: 1194 AKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 139/469 (29%), Positives = 234/469 (49%), Gaps = 41/469 (8%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + ++ +F KM   G+T + ++F  ILK  A    + E  ++HG   KLGFGS   V   L
Sbjct: 535 RESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSL 594

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           +  Y   G++  A  +FD++  RD+V W+ MI G   NG     L  F +M +  V  D 
Sbjct: 595 IATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDL 654

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
             L   ++AC+  G+LS G A+H   +    + +    +TL+ MY+ CG ++ A   F+K
Sbjct: 655 ATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEK 714

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +  K +V  T++++ Y R G  +D                               A++LF
Sbjct: 715 MGQKTVVSWTSLIAAYVREGLYDD-------------------------------AIRLF 743

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            EM+  G+ PD  +M SV+ ACA    LD+ + +H YI KN     L V+NA++DMYAKC
Sbjct: 744 YEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKC 803

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           GS+E A  VF ++  ++++SW +MI  ++ +     AL  F +M+ ES  P+G+T   +L
Sbjct: 804 GSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLL 862

Query: 459 YACSHAGLVDEGREIFAS-MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
            AC     ++ GR I    + N Y+   +      ++D++ +   L  A  L + +P   
Sbjct: 863 PACGSLAALEIGRGIHGCILRNGYS--SELHVANALIDMYVKCGSLVHARLLFDMIP-EK 919

Query: 518 NVVIWGSLMAACRVH--GEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
           +++ W  +++ C +H  G   +A F   ++  + PD    +   S +YA
Sbjct: 920 DLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDE---ITFTSILYA 965



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/471 (23%), Positives = 224/471 (47%), Gaps = 40/471 (8%)

Query: 64  PSSLYYALSIFSQIPAPPSRVS-----NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
           PS  Y+ LS +  +P   +RV      ++  +   +         V L  +++   +D  
Sbjct: 394 PSRKYF-LSSYLDVPRSSTRVGAFAKLDENTKICKFCEVGDLRNAVELLRMSQKSELDLN 452

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK- 177
           ++  IL+  A  + L EG  VH + +  G   +  +   LV MY +CG + + R +FD  
Sbjct: 453 AYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHI 512

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           +S   +  W++M+  Y + G + E + LF++M+   +  +    S IL   +  G +   
Sbjct: 513 LSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGEC 572

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
           + +H  +          + ++LI  Y   G +D A  LFD++  +++V   +M+SG    
Sbjct: 573 KRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISG---- 628

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
                                  +++G++       AL+ F +M +  +  D  T+++ +
Sbjct: 629 ----------------------CVMNGFS-----HSALEFFVQMLILRVGVDLATLVNSV 661

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
           +ACA++G L   + +H    K  F  ++  NN ++DMY+KCG+L  A + FE+M ++ V+
Sbjct: 662 AACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVV 721

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
           SWTS+I A+   G   +A+  F +M+ + + P+  +   VL+AC+    +D+GR++  + 
Sbjct: 722 SWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVH-NY 780

Query: 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
             + N+         ++D++ +   + EA  +   +P   ++V W +++  
Sbjct: 781 IRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIP-VKDIVSWNTMIGG 830


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 235/522 (45%), Positives = 348/522 (66%)

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
           + + LF  ++  +V PD    S +L AC    +LS G  +H  +       + +LQ+ ++
Sbjct: 111 DAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIV 170

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
            +YA+CG M  A+ LF+K+  +++V    M++   + G  E A  +F +M E+++  W++
Sbjct: 171 HLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTS 230

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           MI+GY +    +EA+ LF +M+  G+K ++VT+++V++ACA LG LD   RIH Y +++ 
Sbjct: 231 MIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHG 290

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
           F  ++R++N +IDMY KCG LE A +VFE M  R V+SW++MI   A+HG A  AL  F+
Sbjct: 291 FKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFS 350

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500
            M    I+PNGVTFIG+L+ACSH GL+ EGR  FASMT +Y I P+ EHYGCMVDL  RA
Sbjct: 351 DMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRA 410

Query: 501 NLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560
            LL EA E +  MP  PN V+WG+L+ ACRVH  +E+AE A K LL+LDP +DG  V+LS
Sbjct: 411 GLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLS 470

Query: 561 NIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLN 620
           NIYA+  RW+D   +RK MK+R + K    S I ++  V+EF+  + SH  T+QI+++  
Sbjct: 471 NIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWE 530

Query: 621 EVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLR 680
           E++ E++  GYVP+    L+D+E+ EK + +  HSEKLAL +GL+++  ++ IRI+KNLR
Sbjct: 531 ELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLR 590

Query: 681 VCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +CEDCH+  KL+S +  REIV+RDR RFH + D  CSC+DYW
Sbjct: 591 ICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 214/444 (48%), Gaps = 75/444 (16%)

Query: 28  MKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA--PPSRVS 85
           ++Q HAQI+K        N+ L  L LT   L      S +YA  IF  +    P + V 
Sbjct: 44  LRQVHAQIIK-------TNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVW 96

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  ++A++    P  A+ +F ++    +  D F+   +L+A      L  G  +HG+  K
Sbjct: 97  NSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEK 156

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV----------------- 188
           +GF S+ ++Q  +V +Y +CG++ +ARL+F+KM  RD+V W++                 
Sbjct: 157 VGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDL 216

Query: 189 --------------MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
                         MI GY Q G   E ++LF +M+ + V+ +E+ +  +L+AC+  G L
Sbjct: 217 FSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGAL 276

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             G  +HE+   +    +  + +TLI MY  CGC++ A  +F+++  + +V  +AM+ G 
Sbjct: 277 DLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGL 336

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
           +  G+ E                               EAL+LF++M   G++P+ VT +
Sbjct: 337 AMHGRAE-------------------------------EALRLFSDMSQVGIEPNGVTFI 365

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERM- 411
            ++ AC+H+G++ + +R    + ++ +G   ++ +   ++D+ ++ G L  A E    M 
Sbjct: 366 GLLHACSHMGLISEGRRFFASMTRD-YGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMP 424

Query: 412 RRRNVISWTSMINAFAIHGDARNA 435
            + N + W +++ A  +H +   A
Sbjct: 425 MKPNGVVWGALLGACRVHKNVEMA 448



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 124/270 (45%), Gaps = 37/270 (13%)

Query: 303 ARLIFDQMVEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           A+ IF + VEK   +   W++ +   AE + P +A+ LF  ++   + PD  T  SV+ A
Sbjct: 79  AQQIF-KCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRA 137

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE---------- 409
           C +L  L   + +H  ++K  F  +L + N I+ +YA CG +  AR +FE          
Sbjct: 138 CLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTW 197

Query: 410 ---------------------RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
                                RM  RNV SWTSMI  +   G A+ A+  F KM++  + 
Sbjct: 198 NIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVK 257

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
            N VT + VL AC+  G +D G  I    +N +           ++D++ +   L EA +
Sbjct: 258 CNEVTVVAVLAACADLGALDLGMRIH-EYSNRHGFKRNVRISNTLIDMYVKCGCLEEACK 316

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELA 538
           + E M     VV W +++    +HG  E A
Sbjct: 317 VFEEME-ERTVVSWSAMIGGLAMHGRAEEA 345


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/624 (41%), Positives = 379/624 (60%), Gaps = 42/624 (6%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYG--ACGKILD---ARLMFDKMSYRDIVPWSVMIDG 192
           Q H L  + G   D ++   LV  Y   +  + L    +  +FD +   ++  W+ MI  
Sbjct: 52  QAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKV 111

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
             +N    + + L+ EM +++  P++     +L ACS AG ++ G  VH  ++ + +  D
Sbjct: 112 CIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGD 171

Query: 253 AHLQSTLITMYANCG-------------------C-------------MDMAKGLFDKVL 280
            H+ S+ I MYA+ G                   C             ++ A+ LF+ + 
Sbjct: 172 GHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMP 231

Query: 281 LKNLVVS-TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
            ++++ +  AM+SG+SR G VE AR  FD+M E+D I WSAMI GY +     EAL++F+
Sbjct: 232 DRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFH 291

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           +MQ   ++P K  + SV+SACA+LG LDQ + IH Y  +N+   D  +  +++DMYAKCG
Sbjct: 292 QMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCG 351

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
            ++ A EVFE+M  + V SW +MI   A+HG A +A+  F+KM    I+PN +TF+GVL 
Sbjct: 352 RIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLN 408

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           AC+H GLV +G  IF SM  EY + P+ EHYGC+VDL GRA LL EA ++V ++P  P  
Sbjct: 409 ACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTP 468

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
            +WG+L+ ACR HG +EL E   K LL+L+P + G   LLSNIYAK  RW++VGE+RK M
Sbjct: 469 AVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLM 528

Query: 580 KERGILKERACSRIEMN-NEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           KERGI      S I++   EV++F+  D SH Q   IY+ L++V   L+  GY PD    
Sbjct: 529 KERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQV 588

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           L D+++EEK   +  HSEKLA+ +GLI++   + IRIVKNLRVCEDCH+  KL+S+VY R
Sbjct: 589 LFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNR 648

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EI++RDR R+HH+++G CSCKD+W
Sbjct: 649 EIIVRDRIRYHHFRNGACSCKDFW 672



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 223/455 (49%), Gaps = 62/455 (13%)

Query: 23  SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFS-LPTTTPSSLYYALSIFSQIPAPP 81
           +SL H+KQ HA IL+   + H Q+S +   L+ S++ + T    S   +L +F  +  P 
Sbjct: 45  TSLHHLKQAHALILR---TGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPN 101

Query: 82  SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG 141
             + N  I+    ++ P  A+ ++ +M+      +++++P +LKA + A  + EG+QVH 
Sbjct: 102 VFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHA 161

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACGKILDA-RLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
              K G G D  + +  + MY + G++++A R++ DK    D V W+ MIDGY + G  +
Sbjct: 162 HLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVE 221

Query: 201 EVLNLFEEMKMSNVEPDEMVLSK---ILSACSRAGNLSYGEAVHEFI--------IDNNV 249
               LFE M      PD  ++S    ++S  SR G +   E   EF         I  + 
Sbjct: 222 AARELFEGM------PDRSMISTWNAMISGFSRCGMV---EVAREFFDEMKERDEISWSA 272

Query: 250 ALDAHLQS--------------------------TLITMYANCGCMDMAKGLFDKVLLKN 283
            +D ++Q                           ++++  AN G +D  + +       +
Sbjct: 273 MIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNS 332

Query: 284 L----VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
           +    V+ T++V  Y++ G+++ A  +F++M  K++  W+AMI G A +   ++A+ LF+
Sbjct: 333 IQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFS 392

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAK 397
           +M +    P+++T + V++ACAH G++ +   I   + K  +G + ++ +   I+D+  +
Sbjct: 393 KMDI---NPNEITFVGVLNACAHGGLVQKGLTIFNSMRKE-YGVEPQIEHYGCIVDLLGR 448

Query: 398 CGSLESAREVFERMRRRNVIS-WTSMINAFAIHGD 431
            G L  A +V   +      + W +++ A   HG+
Sbjct: 449 AGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGN 483


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/592 (41%), Positives = 357/592 (60%), Gaps = 7/592 (1%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
            VH    +LG   D ++   ++      G    +  +F +    +I  ++ MI G   N 
Sbjct: 28  HVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLND 87

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
            F E + ++  M+   + PD      +L AC+R  +   G  +H  ++      DA + +
Sbjct: 88  SFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNT 147

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR-------LIFDQM 310
           +L+++Y  CG +D A  +FD +  KN+   TA++SGY   G+  +A         +FD M
Sbjct: 148 SLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGM 207

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
           +EKD++ WS+MI GYA N  P+EAL LF +M   G +PD   M+ V+ ACA LG L+   
Sbjct: 208 LEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGN 267

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
                +D+N F G+  +  A+IDMYAKCG ++SA EVF  MR+++++ W + I+  A+ G
Sbjct: 268 WASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSG 327

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
             + A   F +M+   I+P+G TF+G+L AC+HAGLVDEGR+ F SM   + + P+ EHY
Sbjct: 328 HVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHY 387

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
           GCMVDL GRA  L EA +LV++MP   N ++WG+L+  CR+H + +L E   KQL+ L+P
Sbjct: 388 GCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEP 447

Query: 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK 610
            + G  VLLSNIY+   +W+D  ++R  M ERGI K    S IE++  V+EFL  D SH 
Sbjct: 448 SNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSHP 507

Query: 611 QTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD 670
            +++IY KL E++ +LK +GYVP     L D+E+EEK   I  HSEKLA+ +GLIS+  +
Sbjct: 508 LSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLISTAPN 567

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             IR+VKNLRVC DCH  IK +S+   REI++RD  RFH + DG CSCKDYW
Sbjct: 568 DKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 129/451 (28%), Positives = 201/451 (44%), Gaps = 78/451 (17%)

Query: 23  SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPS 82
           +SL H+K  HA +L+L     S   LL K+L  SF+   T      Y+  IF Q   P  
Sbjct: 21  NSLKHLKHVHAALLRLGLDEDSY--LLNKVLRFSFNFGNTN-----YSHRIFHQTKEPNI 73

Query: 83  RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGL 142
            + N  I  +  +   + +++++  M  EGL+ D F+FP +LKA AR      G+++HGL
Sbjct: 74  FLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGL 133

Query: 143 GTKLGFGSDPFVQTGLVGMYGACG------KILD-------------------------- 170
             K G  SD FV T LV +YG CG      K+ D                          
Sbjct: 134 VVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREA 193

Query: 171 ------ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
                 A  +FD M  +DIV WS MI GY  NGL  E L+LF +M      PD   +  +
Sbjct: 194 IDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGV 253

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L AC+R G L  G      +  N    +  L + LI MYA CG MD A  +F  +  K++
Sbjct: 254 LCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDI 313

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
           VV  A +SG + +G                               H + A  LF +M+  
Sbjct: 314 VVWNAAISGLAMSG-------------------------------HVKAAFGLFGQMEKS 342

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK-NAFGGDLRVNNAIIDMYAKCGSLES 403
           G++PD  T + ++ AC H G++D+ ++    +++      ++     ++D+  + G L+ 
Sbjct: 343 GIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDE 402

Query: 404 AREVFERM-RRRNVISWTSMINAFAIHGDAR 433
           A ++ + M    N I W +++    +H D +
Sbjct: 403 AHQLVKSMPMEANAIVWGALLGGCRLHRDTQ 433


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/724 (37%), Positives = 401/724 (55%), Gaps = 52/724 (7%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +P+    L    A SS + L   K+ HAQ++K+               ++ F + T   S
Sbjct: 159 EPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVG-------------FVSDFRIGTALVS 205

Query: 66  ------SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
                 S+  A  +F  +        N  I   + S   + A ++F +M  EG   +R S
Sbjct: 206 MYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRIS 265

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           F  IL   +  E L  G  VH      G   D  V T L+ MY  CG I  AR +FDKM 
Sbjct: 266 FLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMK 325

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            RD+V W+VMI GY +N   ++   LF  M+   ++PD +    I++AC+ + +LS    
Sbjct: 326 VRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLARE 385

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H  ++      D  + + L+ MYA CG +  A+ +FD +  +++V  +AM         
Sbjct: 386 IHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAM--------- 436

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
                                 I  Y EN   +EA + F+ M+   ++PD VT +++++A
Sbjct: 437 ----------------------IGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNA 474

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           C HLG LD    I+    K      + V NA+I+M  K GS+E AR +FE M +R+V++W
Sbjct: 475 CGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTW 534

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
             MI  +++HG+AR AL  F++M  E   PN VTF+GVL ACS AG V+EGR  F+ + +
Sbjct: 535 NVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLD 594

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
              I P  E YGCMVDL GRA  L EA  L+  MP  PN  IW +L+AACR++G +++AE
Sbjct: 595 GRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAE 654

Query: 540 FAAKQLLQLDPDHDGAL-VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
            AA++ L  +P +DGA+ V LS++YA    W++V ++RK M+ RG+ KE+ C+ IE+  +
Sbjct: 655 RAAERCLMSEP-YDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGK 713

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           ++ F+  DRSH Q  +IY +L  +++ +K  GY+P   + L ++ ++EK E I +HSEKL
Sbjct: 714 LHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKL 773

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+ YG++S    + IRI KNLRVC DCH+  K +SKV  REI+ RD +RFHH+K+GVCSC
Sbjct: 774 AIAYGVLSLPSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSC 833

Query: 719 KDYW 722
            DYW
Sbjct: 834 GDYW 837



 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 143/471 (30%), Positives = 232/471 (49%), Gaps = 64/471 (13%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           K A  +F +M++E +     +F  +L A +   GL  G + H    K+GF SD  + T L
Sbjct: 144 KEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTAL 203

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           V MY   G +  AR +FD +  RD+  ++VMI GY ++G  ++   LF  M+    +P+ 
Sbjct: 204 VSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNR 263

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           +    IL  CS    L++G+AVH   ++  +  D  + + LI MY  CG ++ A+ +FDK
Sbjct: 264 ISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDK 323

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           + ++++V  T M+ GY+    +ED                               A  LF
Sbjct: 324 MKVRDVVSWTVMIRGYAENSNIED-------------------------------AFGLF 352

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
             MQ  G++PD++T + +I+ACA    L  A+ IH  + +  FG DL V+ A++ MYAKC
Sbjct: 353 ATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKC 412

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G+++ AR+VF+ M RR+V+SW++MI A+  +G    A   F+ MK  +++P+ VT+I +L
Sbjct: 413 GAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLL 472

Query: 459 YACSHAGLVDEGREIF------------------------------ASMTNEYNIPPKYE 488
            AC H G +D G EI+                              A    E  +     
Sbjct: 473 NACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVV 532

Query: 489 HYGCMVDLFGRANLLREALELVETM---PFAPNVVIWGSLMAACRVHGEIE 536
            +  M+  +      REAL+L + M    F PN V +  +++AC   G +E
Sbjct: 533 TWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVE 583



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 211/449 (46%), Gaps = 60/449 (13%)

Query: 141 GLGTKLGFGSDPFVQTG----------LVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
           GLG ++    D  +Q+G          L+ ++  CG +L+AR  FD +  + +V W+ +I
Sbjct: 78  GLGKQV---RDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAII 134

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
            GY Q G   E   LF +M    +EP  +    +L ACS    L  G+  H  +I     
Sbjct: 135 AGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVG-- 192

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
                                         + +  + TA+VS Y + G ++ AR +FD +
Sbjct: 193 -----------------------------FVSDFRIGTALVSMYVKGGSMDGARQVFDGL 223

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
            ++D+  ++ MI GYA++   ++A +LF  MQ  G KP++++ LS++  C+    L   +
Sbjct: 224 YKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGK 283

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
            +H          D+RV  A+I MY  CGS+E AR VF++M+ R+V+SWT MI  +A + 
Sbjct: 284 AVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENS 343

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
           +  +A   F  M++E I P+ +T+I ++ AC+ +  +   REI + +             
Sbjct: 344 NIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRA-GFGTDLLVD 402

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH--GEIELAEFAAKQLLQL 548
             +V ++ +   +++A ++ + M    +VV W +++ A   +  GE     F   +   +
Sbjct: 403 TALVHMYAKCGAIKDARQVFDAMS-RRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNV 461

Query: 549 DPD------------HDGALVLLSNIYAK 565
           +PD            H GAL L   IY +
Sbjct: 462 EPDVVTYINLLNACGHLGALDLGMEIYTQ 490


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/586 (41%), Positives = 359/586 (61%), Gaps = 4/586 (0%)

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
           +Q+H +  + G    P +   L   Y + G++  +  +F +     +  W+ +I G+   
Sbjct: 47  LQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALR 106

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           GL ++ LN + +M    VEP+    S IL  C     +  G+A+H   +      D +++
Sbjct: 107 GLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVR 162

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           + L+ +YA  G +  A+ LFD +  K+LV  TAM++ Y++ G+++ AR++FD M E+D +
Sbjct: 163 TGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGV 222

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
           CW+ MI GY +N  P EAL LF  M     KP++VT+LSV+SAC  LG L+  + +H YI
Sbjct: 223 CWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYI 282

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
           + N    ++ V  A++DMY+KCGSLE AR VF+++  ++V++W SMI  +A+HG ++ AL
Sbjct: 283 ENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEAL 342

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             F  M    + P  +TFIG+L AC H+G V EG +IF  M +EY I PK EHYGCMV+L
Sbjct: 343 QLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNL 402

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
            GRA  + +A ELV+ M   P+ V+WG+L+ ACR+HG+I L E   + L+  +  + G  
Sbjct: 403 LGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTY 462

Query: 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           +LLSNIYA    W  V  LR  MK+ G+ KE  CS IE+NN+V+EFL    +H +  +IY
Sbjct: 463 ILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIY 522

Query: 617 EKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIV 676
             L E+   LK  GY P     L D+ + EK   +  HSEKLA+ +GLI+++  + I+IV
Sbjct: 523 MMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIV 582

Query: 677 KNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KNLRVC DCH   KL+SK+  R+IV+RDR RFHH+ +G CSC DYW
Sbjct: 583 KNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 207/446 (46%), Gaps = 77/446 (17%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           I    +++H+ Q HA + +    HH    L  KL  +  SL       L Y++++F +  
Sbjct: 37  IDKSKTISHLLQIHAVLFRHGLDHHP--ILNFKLQRSYASL-----GRLDYSVALFGRTQ 89

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P        I   +     + AL  + +ML +G+  + F+F  ILK       +  G  
Sbjct: 90  NPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKA 145

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILD---------------------------- 170
           +H    KLGF SD +V+TGL+ +Y   G ++                             
Sbjct: 146 LHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGE 205

Query: 171 ---ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
              AR++FD M  RD V W+VMIDGY QNG+ +E L LF  M  +  +P+E+ +  +LSA
Sbjct: 206 LDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSA 265

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           C + G L  G  VH +I +N +  + H+ + L+ MY+ CG ++ A+ +FDK+  K++V  
Sbjct: 266 CGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAW 325

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
            +M+ GY+  G                                 QEAL+LF  M   G+ 
Sbjct: 326 NSMIVGYAMHG-------------------------------FSQEALQLFKSMCRMGLH 354

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAR 405
           P  +T + ++SAC H G + +   I   + K+ +G + ++ +   ++++  + G +E A 
Sbjct: 355 PTNITFIGILSACGHSGWVTEGWDIFNKM-KDEYGIEPKIEHYGCMVNLLGRAGHVEQAY 413

Query: 406 EVFERMR-RRNVISWTSMINAFAIHG 430
           E+ + M    + + W +++ A  +HG
Sbjct: 414 ELVKNMNIEPDPVLWGTLLGACRLHG 439


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/569 (42%), Positives = 371/569 (65%), Gaps = 7/569 (1%)

Query: 156 TGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
           T +V  Y     +  AR  FD M  R +V W+ M+ GY QNGL +EVL LF+EM  + +E
Sbjct: 198 TAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIE 257

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           PDE     ++SACS  G+     ++   +    + L+  +++ L+ MYA CG +  A+ +
Sbjct: 258 PDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRI 317

Query: 276 FDKV-LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
           FD++   +N V   AM+S Y+R G ++ AR +F+ M  ++++ W++MI+GYA+N     A
Sbjct: 318 FDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMA 377

Query: 335 LKLFNEMQVCG-MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
           ++LF EM     + PD+VTM+SVISAC HLG L+    +  ++ +N     +  +NA+I 
Sbjct: 378 IELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIF 437

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
           MY++CGS+E A+ VF+ M  R+V+S+ ++I+ FA HG    A+   + MK+  I+P+ VT
Sbjct: 438 MYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVT 497

Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
           FIGVL ACSHAGL++EGR++F S+ +     P  +HY CMVDL GR   L +A   +E M
Sbjct: 498 FIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERM 552

Query: 514 PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573
           P  P+  ++GSL+ A R+H ++EL E AA +L +L+PD+ G  +LLSNIYA   RW+DV 
Sbjct: 553 PMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVE 612

Query: 574 ELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVP 633
            +R++MK+ G+ K    S +E   ++++F+ ADRSH+++D IY+ L E+  +++ AGY+ 
Sbjct: 613 RIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIA 672

Query: 634 DIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVS 693
           D    L D+E+EEK E++  HSEKLA+CY L+ S+  + IR+VKNLRVC DCH  IK++S
Sbjct: 673 DKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMIS 732

Query: 694 KVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           K+  R I++RD  RFH + DG+CSCKDYW
Sbjct: 733 KLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 200/427 (46%), Gaps = 73/427 (17%)

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
           L+F+     ++  ++ M+  Y       +V+ +FE M+   V PD  V   ++ +   AG
Sbjct: 55  LLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKS---AG 111

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL------------ 280
           N   G   H  ++      DA +++ +I MYA  G +  A+ +FD++             
Sbjct: 112 NGGIG--FHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAM 169

Query: 281 ---------------------LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWS 319
                                 +N++  TAMV+GY++   +E AR  FD M E+ ++ W+
Sbjct: 170 VSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWN 229

Query: 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379
           AM+SGYA+N   +E L+LF+EM   G++PD+ T ++VISAC+  G    A  +   + + 
Sbjct: 230 AMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQK 289

Query: 380 AFGGDLRVNNAIIDMYAKCGS--------------------------------LESAREV 407
               +  V  A++DMYAKCGS                                L+SARE+
Sbjct: 290 QIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSAREL 349

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGL 466
           F  M  RNV++W SMI  +A +G +  A+  F +M   + + P+ VT + V+ AC H G 
Sbjct: 350 FNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGA 409

Query: 467 VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLM 526
           ++ G  +   +T E  I      +  M+ ++ R   + +A  + + M    +VV + +L+
Sbjct: 410 LELGNWVVRFLT-ENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMA-TRDVVSYNTLI 467

Query: 527 AACRVHG 533
           +    HG
Sbjct: 468 SGFAAHG 474



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 176/385 (45%), Gaps = 71/385 (18%)

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAIA-RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           L++F +M+N G+  D  ++  ++ A + R +  L    V  L  K     + FV+T L+ 
Sbjct: 245 LRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQK-QIQLNCFVRTALLD 303

Query: 161 MYGACGKILDARLMFDK--------------------------------MSYRDIVPWSV 188
           MY  CG I  AR +FD+                                M  R++V W+ 
Sbjct: 304 MYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNS 363

Query: 189 MIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
           MI GY QNG     + LF+EM     + PDE+ +  ++SAC   G L  G  V  F+ +N
Sbjct: 364 MIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTEN 423

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
            + L     + +I MY+ CG M+ AK +F ++  +++V                      
Sbjct: 424 QIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVV---------------------- 461

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
                     ++ +ISG+A + H  EA+ L + M+  G++PD+VT + V++AC+H G+L+
Sbjct: 462 ---------SYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLE 512

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAF 426
           + +++   I   A    +     ++D+  + G LE A+   ERM    +   + S++NA 
Sbjct: 513 EGRKVFESIKDPA----IDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNAS 568

Query: 427 AIHGDARNALIFFNKMKDESIDPNG 451
            IH       +  NK+ +   D +G
Sbjct: 569 RIHKQVELGELAANKLFELEPDNSG 593



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 132/349 (37%), Gaps = 112/349 (32%)

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
           L+F+  +  ++  +++M+  Y+      + + +F  MQ CG++PD      +I +  + G
Sbjct: 55  LLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGG 114

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER-------------- 410
           +       H ++ K   G D  V NA+IDMYA+ G +  AR+VF+               
Sbjct: 115 I-----GFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAM 169

Query: 411 -------------------MRRRNVISWTSMINAFA------------------------ 427
                              M  RNVI+WT+M+  +A                        
Sbjct: 170 VSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWN 229

Query: 428 --IHGDARNALI-----FFNKMKDESIDPNGVTFIGVLYACS------------------ 462
             + G A+N L       F++M +  I+P+  T++ V+ ACS                  
Sbjct: 230 AMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQK 289

Query: 463 -----------------HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505
                              G +   R IF  +    N       +  M+  + R   L  
Sbjct: 290 QIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVT----WNAMISAYTRVGNLDS 345

Query: 506 ALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL---QLDPD 551
           A EL  TMP   NVV W S++A    +G+  +A    K+++   +L PD
Sbjct: 346 ARELFNTMP-GRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPD 393


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/699 (34%), Positives = 397/699 (56%), Gaps = 39/699 (5%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83
           S +  KQ HAQ ++     H+  S+++ +         T    L+ AL +F  + +PP  
Sbjct: 20  SKSQAKQLHAQFIRTQSLSHTSASIVISIY--------TNLKLLHEALLVFKTLESPPVL 71

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
                IR  +       AL  F++M   G   D   FP +LK+      L  G  VHG  
Sbjct: 72  AWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFI 131

Query: 144 TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
            +LG   D +    L+ MY     I   R +F+ M  +D+V ++ +I GY Q+G++++ L
Sbjct: 132 VRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDAL 191

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            +  EM  S+++PD   LS +L   S   ++  G+ +H ++I   +  D ++ S+L+ MY
Sbjct: 192 RMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMY 251

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
           A                               ++ ++ED+  +F  +  +D I W+++++
Sbjct: 252 A-------------------------------KSARIEDSERVFSHLYRRDSISWNSLVA 280

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           GY +N    EAL+LF +M    ++P  V   SVI ACAHL  L   +++H Y+ +  FG 
Sbjct: 281 GYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGR 340

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
           ++ + +A++DMY+KCG++++AR++F+RM   + +SWT++I   A+HG    A+  F +MK
Sbjct: 341 NIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMK 400

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
            + + PN V F+ VL ACSH GLVDE    F SMT  Y +  + EHY  + DL GRA  L
Sbjct: 401 RQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKL 460

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563
            EA + +  M   P   +W +L+++C VH  +ELAE  A+++  +D ++ GA VL+ N+Y
Sbjct: 461 EEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMY 520

Query: 564 AKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVI 623
           A + RW+++ +LR  ++++G+ K+ ACS IEM N+ + F++ DRSH   D+I E L  V+
Sbjct: 521 ASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVM 580

Query: 624 SELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCE 683
            +++  GYV D    L D+++E KRE++  HSE+LA+ +G+I+++  + IR+ KN+R+C 
Sbjct: 581 EQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICT 640

Query: 684 DCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           DCH  IK +SK+  REI++RD +RFHH+  G CSC DYW
Sbjct: 641 DCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 269/743 (36%), Positives = 414/743 (55%), Gaps = 41/743 (5%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           PT  ++   + L  +  T  ++L    + H  NSL      TS   P+  P  L YALS+
Sbjct: 7   PTPGSVRQATELHALVTTSGRLLHPPSAAHLLNSL------TSCISPSD-PLHLRYALSL 59

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG- 132
           F ++P                S  P   + ++ +M    +  D F+F  + K  AR    
Sbjct: 60  FDRMPCSTFLFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAH 119

Query: 133 LLEGMQVHGLGTKLGFGSD-PFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
           +L G  +H    +    S  P + + ++ MY   G   DAR  FD+ S +D+V W+ +I 
Sbjct: 120 VLLGRMLHAACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVIS 179

Query: 192 GYFQNGLFD-------------------------------EVLNLFEEMKMSNVEPDEMV 220
           G  + GL D                               E ++ F  M    + PDE+ 
Sbjct: 180 GLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVT 239

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           +  +LSAC +  +L++G ++H  + D  + +   L   LI MYA CG    A+ +FD + 
Sbjct: 240 VIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALG 299

Query: 281 L-KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
             +      AM+ GY + G V+ AR +FDQM + D+I ++++I+GY      +EAL LF 
Sbjct: 300 RGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFT 359

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           +M+  G+  D  TM+ +++A A LG L Q + +H  I++     D+ +  A++DMY KCG
Sbjct: 360 KMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCG 419

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
            +E A   F++M  R+V +W++MI   A +G  + AL  F  MK +    N VT+I VL 
Sbjct: 420 RVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLT 479

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           ACSH+ L+DEGR  F  M   +NI P+ EHYGCM+DL GR+ LL EA++LV+TMP  PN 
Sbjct: 480 ACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNA 539

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
           VIW S+++ACRVH  ++LA+ AA  LL+L+P  D   V + NIY   ++W+D  ++R+ M
Sbjct: 540 VIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLM 599

Query: 580 KERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
           ++RG+ K    S I +  +V++F+  DRSH Q  +I   + E+   LK AGY P      
Sbjct: 600 EKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRRLKSAGYSPITSQIT 659

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
           VD+++EEK + +L HSEKLA+ +GL+S   +  + I+KNLRVCEDCH+ IKL+S+++ RE
Sbjct: 660 VDVDEEEKEQALLAHSEKLAIAFGLVSLAPNLPVHIIKNLRVCEDCHSAIKLISRLWNRE 719

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           I++RDR+RFHH++ GVCSC D+W
Sbjct: 720 IIVRDRSRFHHFRGGVCSCNDFW 742


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 251/585 (42%), Positives = 370/585 (63%), Gaps = 9/585 (1%)

Query: 147 GFGSDPFVQTGLVGMYGACGKI-LDARL-MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           GF SD F  + L+        I LD  L +FD++   +   W+ M+  Y Q+   ++ L 
Sbjct: 56  GFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALL 115

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           L++ M  +NV PD      ++ AC+       G+ +H+ ++      D ++Q+TLI MYA
Sbjct: 116 LYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYA 175

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG---QVEDARLIFDQMVEKDLICWSAM 321
            CG M  A+ LFD+  + + V   ++++GY + G   QV +A  +F++M EKD++ WSA+
Sbjct: 176 VCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSAL 235

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF 381
           ISGY +N   +EAL +F EM   GM+ D+V ++SV+SACAHL ++   + IH  + +   
Sbjct: 236 ISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGI 295

Query: 382 GGDLRVNNAII----DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
              + + NA+I    DMY KCG +E+A EVF  M  + V SW ++I   A++G    +L 
Sbjct: 296 ESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLD 355

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F++MK+  + PN +TF+GVL AC H GLVDEGR  FASM  ++ I P  +HYGCMVDL 
Sbjct: 356 MFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLL 415

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557
           GRA LL EA +L+E+MP AP+V  WG+L+ AC+ HG+ E+ E   ++L++L PDHDG  V
Sbjct: 416 GRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHV 475

Query: 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYE 617
           LLSNI+A    W+DV E+R  MK++G++K   CS IE N  V+EFL  D++H   +++  
Sbjct: 476 LLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEG 535

Query: 618 KLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVK 677
            LNE+   LK  GY PD +   +D+++EEK   +  HSEKLA+ +GL++    + IRI+K
Sbjct: 536 MLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMK 595

Query: 678 NLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           NLR+C DCH   KL+SK YAREIV+RDR RFH++K+G CSC DYW
Sbjct: 596 NLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 640



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 210/443 (47%), Gaps = 77/443 (17%)

Query: 40  HSHHSQNSLLLKLLLTSFSLPTTTPSSLY------------YALSIFSQIPAPPSRVSNK 87
           H+    N +L +++LT F   T   S L             Y+L IF +I      + N 
Sbjct: 40  HNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNT 99

Query: 88  FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
            +RA   S+  + AL ++  M+   +  D +++P +++A A       G ++H    K+G
Sbjct: 100 MMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVG 159

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFD------------------------------- 176
           F SD +VQ  L+ MY  CG + DAR +FD                               
Sbjct: 160 FDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWK 219

Query: 177 ---KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
              +M  +D+V WS +I GY QNG+++E L +F EM  + +  DE+V+  +LSAC+    
Sbjct: 220 LFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSI 279

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           +  G+ +H  +I   +    +LQ+ LI MY+     DM                      
Sbjct: 280 VKTGKMIHGLVIRMGIESYVNLQNALIHMYS-----DM---------------------- 312

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           Y + G VE+A  +F+ M EK +  W+A+I G A N   + +L +F+EM+  G+ P+++T 
Sbjct: 313 YMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITF 372

Query: 354 LSVISACAHLGVLDQAQRIHL--YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           + V+ AC H+G++D+  R H    I+K+    +++    ++D+  + G L  A ++ E M
Sbjct: 373 MGVLGACRHMGLVDEG-RCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESM 431

Query: 412 -RRRNVISWTSMINAFAIHGDAR 433
               +V +W +++ A   HGD  
Sbjct: 432 PMAPDVATWGALLGACKKHGDTE 454


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 264/688 (38%), Positives = 393/688 (57%), Gaps = 70/688 (10%)

Query: 105 FLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA 164
           F +++  G   D ++ P +++A    + L  G  +H +  K G   D FV   LV MY  
Sbjct: 18  FRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVK 77

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
           C +I DAR +FDKM  RD+V W+VMI GY + G  +E L LFE+M+   V PD++ +  +
Sbjct: 78  CREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTV 137

Query: 225 LSACSRAGNLSYGEAVHEF---------IIDNNVALDAHLQ------------------- 256
           + AC++ G +     + ++         +I     +D + +                   
Sbjct: 138 VFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNV 197

Query: 257 ---STLITMYANCGCMDMAKGLF----------DKVLLKNLV------------------ 285
              S +I  Y   G    A  LF          DK+ L +L+                  
Sbjct: 198 ISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHI 257

Query: 286 -----------VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
                      V  A+V  Y +  ++EDAR +FD+M E+DL+ W+ MI GYAE  +  E+
Sbjct: 258 VYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANES 317

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
           L LF++M+  G+ PDKV M++V+ ACA LG + +A+ I  YI +  F  D+ +  A+IDM
Sbjct: 318 LVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDM 377

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           +AKCG +ESARE+F+RM  +NVISW++MI A+  HG  R AL  F  M    I PN +T 
Sbjct: 378 HAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITL 437

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           + +LYACSHAGLV+EG   F+ M  +Y++    +HY C+VDL GRA  L EAL+L+E+M 
Sbjct: 438 VSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMT 497

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
              +  +WG+ + ACR H ++ LAE AA  LL+L P + G  +LLSNIYA   RW+DV +
Sbjct: 498 VEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAK 557

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
            R  M +R + K    + IE++N+ ++F   D +H ++ +IYE L  + ++L+  GYVPD
Sbjct: 558 TRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPD 617

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
            +  L D+++E K  ++  HSEKLA+ +GLI++ + + IRI+KNLRVC DCH F KLVS 
Sbjct: 618 TNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSA 677

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +  R I++RD  RFHH+K+G CSC DYW
Sbjct: 678 ITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 173/342 (50%), Gaps = 37/342 (10%)

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           M+ G+ + G +      F E+      PD   L  ++ AC    NL  G  +H  +    
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           + LD  + + L+ MY  C  ++ A+ LFDK+  ++LV  T M+ GY+  G+  ++ ++F+
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           +M E+                               G+ PDKV M++V+ ACA LG + +
Sbjct: 121 KMREE-------------------------------GVVPDKVAMVTVVFACAKLGAMHK 149

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
           A+ I  YI +  F  D+ +  A+IDMYAKCG +ESARE+F+RM  +NVISW++MI A+  
Sbjct: 150 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 209

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG  R AL  F  M    + P+ +T   +LYACS    +  GR I   +   Y      +
Sbjct: 210 HGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIV---YKFGLDLD 266

Query: 489 HYGC--MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           H+ C  +VD++G+   + +A  L + MP   ++V W  ++  
Sbjct: 267 HFVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVMIGG 307



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 183/364 (50%), Gaps = 33/364 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  IF ++        +  I A  +  + + AL +F  ML+ G+  D+ +   +L A + 
Sbjct: 185 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSD 244

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            + L  G  +H +  K G   D FV   LV MYG C +I DAR +FDKM  RD+V W+VM
Sbjct: 245 LKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVM 304

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY + G  +E L LF++M+   V PD++ +  ++ AC++ G +     + ++I     
Sbjct: 305 IGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKF 364

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            LD  L + +I M+A CGC++ A+ +FD++  KN++  +AM++ Y   GQ          
Sbjct: 365 QLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ---------- 414

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                                 ++AL LF  M   G+ P+K+T++S++ AC+H G++++ 
Sbjct: 415 ---------------------GRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEG 453

Query: 370 QRIH-LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFA 427
            R   L  +  +   D++    ++D+  + G L+ A ++ E M   ++   W + + A  
Sbjct: 454 LRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACR 513

Query: 428 IHGD 431
            H D
Sbjct: 514 THKD 517



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 115/218 (52%), Gaps = 10/218 (4%)

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           M+ G+A+          F E+  CG +PD  T+  VI AC  L  L   + IH  + K  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
              D  V  A++DMY KC  +E AR +F++M+ R++++WT MI  +A  G A  +L+ F 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE----HYGCMVDL 496
           KM++E + P+ V  + V++AC+  G + + R I     ++Y    K++        M+D+
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARII-----DDYIQRKKFQLDVILGTAMIDM 175

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
           + +   +  A E+ + M    NV+ W +++AA   HG+
Sbjct: 176 YAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ 212


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 276/723 (38%), Positives = 410/723 (56%), Gaps = 49/723 (6%)

Query: 3   TLSQPTKPLTLPT-STAISSCSSLTHMKQTHAQILKL-SHSHHSQNSLLLKLLLTSFSLP 60
           TLS   +P   P     + +C +     Q HA  +K  S +H S +S LL L    ++ P
Sbjct: 5   TLSHSLQPFLPPNLHFPLQNCGTEREANQLHALSIKTASLNHPSVSSRLLAL----YADP 60

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
               ++L YA S+F  I  P     N  I+    + R   A+ +F K+L +    D F+ 
Sbjct: 61  RI--NNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCD-FVPDSFTL 117

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
           P +LK  AR   L EG Q+HGL  K+GFG D FV + LV MY  CG+I   R +FD+M  
Sbjct: 118 PCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMED 177

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           +D+V W+ +IDGY + G  +  L +FEEM     E D    + ++   S++G L      
Sbjct: 178 KDVVSWNSLIDGYARCGEIELALEMFEEMP----EKDSFSWTILIDGLSKSGKL------ 227

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
                                        + A+ +FD++ ++N V   AM++GY +AG  
Sbjct: 228 -----------------------------EAARDVFDRMPIRNSVSWNAMINGYMKAGDS 258

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
             A+ +FDQM E+ L+ W++MI+GY  N    +ALKLF  M    + P+  T+L  +SA 
Sbjct: 259 NTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAA 318

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           + +  L   + +H YI K+ F  D  +   +I+MY+KCGS++SA  VF  + ++ +  WT
Sbjct: 319 SGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWT 378

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           S+I    +HG     L  F++M    + P+ +TFIGVL ACSHAG  ++    F  MT +
Sbjct: 379 SVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYD 438

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
           Y I P  EHYGC++D+  RA  L EA + +E MP   N VIW SL++  R HG I + E+
Sbjct: 439 YGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEY 498

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
           AA+ L+ L PD  G  V+LSN+YA    W+ V ++R+ MK++G+ K+  CS IE    ++
Sbjct: 499 AAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIH 558

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL-WHSEKLA 659
           EF+  D+SH QT++IY KL E+  +L  AG++PD    L+ LE++ ++E  L  HSE+LA
Sbjct: 559 EFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSERLA 618

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           + +GL++ K  S IRI+KNLR+C DCH   KL+S +Y REI+IRD +RFHH+K G CSCK
Sbjct: 619 IAFGLLNIKHGSPIRIIKNLRICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCK 678

Query: 720 DYW 722
           D+W
Sbjct: 679 DFW 681


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/717 (36%), Positives = 395/717 (55%), Gaps = 38/717 (5%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +P K   +   +A SS ++L   ++ H ++++   ++   N+ +   L++ ++       
Sbjct: 142 EPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLAN---NATVGNALISMYA----KCG 194

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           S+  A  +F  + +           A + S   + +LK +  ML EG+   R ++  +L 
Sbjct: 195 SVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLS 254

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A      L +G Q+H    +    SD  V T L  MY  CG + DAR +F+ +  RD++ 
Sbjct: 255 ACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIA 314

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ MI G   +G  +E   +F  M    V PD +    ILSAC+R G L+ G+ +H   +
Sbjct: 315 WNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAV 374

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
            + +  D    + LI MY                               S+AG ++DAR 
Sbjct: 375 KDGLVSDVRFGNALINMY-------------------------------SKAGSMKDARQ 403

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +FD+M ++D++ W+A++ GYA+     E+   F +M   G++ +K+T + V+ AC++   
Sbjct: 404 VFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVA 463

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L   + IH  + K     DL V NA++ MY KCGS+E A  V E M  R+V++W ++I  
Sbjct: 464 LKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGG 523

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
            A +G    AL  F  MK E + PN  TF+ V+ AC    LV+EGR  FASM  +Y I P
Sbjct: 524 LAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVP 583

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
             +HY CMVD+  RA  L EA +++ TMPF P+  +WG+L+AACR HG +E+ E AA+Q 
Sbjct: 584 TEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQC 643

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
           L+L+P + G  V LS IYA    W+DV +LRK MKERG+ KE   S IE+  EV+ F+  
Sbjct: 644 LKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAG 703

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           D+SH +T++IY +L  +  ++K  GYVPD    + DL+ E K   +  HSEKLA+ YGLI
Sbjct: 704 DQSHPRTEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLI 763

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S+  ++ IR+ KNLRVC DCH   K +SK+  REI+ RD  RFHH+K+G CSC DYW
Sbjct: 764 STPPETPIRVSKNLRVCTDCHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 232/438 (52%), Gaps = 33/438 (7%)

Query: 110 NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL 169
            +G  +D + +  +L++  +A+ L  G QVH    + G   + ++   L+ +Y  CG + 
Sbjct: 37  QKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVN 96

Query: 170 DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229
           +AR +FDK S + +V W+VMI GY   GL  E  NLF  M+   +EPD+     ILSACS
Sbjct: 97  EARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACS 156

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
               L++G  VH  +++  +A +A + + LI+MYA CG +  A+ +FD            
Sbjct: 157 SPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFD------------ 204

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
                               M  +D + W+ +   YAE+ + QE+LK ++ M   G++P 
Sbjct: 205 -------------------AMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPS 245

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           ++T ++V+SAC  L  L++ ++IH  I ++    D+RV+ A+  MY KCG+++ AREVFE
Sbjct: 246 RITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFE 305

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            +  R+VI+W +MI      G    A   F++M  E + P+ VT++ +L AC+  G +  
Sbjct: 306 CLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLAC 365

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G+EI A    +  +         +++++ +A  +++A ++ + MP   +VV W +L+   
Sbjct: 366 GKEIHARAVKD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALVGGY 423

Query: 530 RVHGEIELAEFAAKQLLQ 547
              G++  +    K++LQ
Sbjct: 424 ADCGQVVESFSTFKKMLQ 441



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/460 (28%), Positives = 227/460 (49%), Gaps = 44/460 (9%)

Query: 83  RVSNKFIRAISW-------SHRP--KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           + SNK +  +SW       +HR   + A  +F  M  EGL  D+F+F  IL A +    L
Sbjct: 104 KFSNKSV--VSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAAL 161

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
             G +VH    + G  ++  V   L+ MY  CG + DAR +FD M+ RD V W+ +   Y
Sbjct: 162 NWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAY 221

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
            ++G   E L  +  M    V P  +    +LSAC     L  G+ +H  I+++    D 
Sbjct: 222 AESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDV 281

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
            + + L  MY  CG +  A+ +F+ +  ++++    M+ G   +GQ+E+A  +F +M+++
Sbjct: 282 RVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKE 341

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
              C                            + PD+VT L+++SACA  G L   + IH
Sbjct: 342 ---C----------------------------VAPDRVTYLAILSACARPGGLACGKEIH 370

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
               K+    D+R  NA+I+MY+K GS++ AR+VF+RM +R+V+SWT+++  +A  G   
Sbjct: 371 ARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVV 430

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
            +   F KM  + ++ N +T++ VL ACS+   +  G+EI A +     I         +
Sbjct: 431 ESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKA-GIFADLAVANAL 489

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           + ++ +   + +A+ + E M    +VV W +L+     +G
Sbjct: 490 MSMYFKCGSVEDAIRVSEGMS-TRDVVTWNTLIGGLAQNG 528



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 202/401 (50%), Gaps = 58/401 (14%)

Query: 171 ARLMFDKMSYRD---IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
           A L+  + S  D   ++P S   DG++      +VL    + K S V+  + V  K+L +
Sbjct: 2   ASLLISRWSRVDKSSMIPTST--DGWYAPA---DVLQYLHQ-KGSQVDSYDYV--KLLQS 53

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           C +A +L+ G+ VHE I+   +  + ++ +TL+ +Y +CG                    
Sbjct: 54  CVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCG-------------------- 93

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
                       V +AR +FD+   K ++ W+ MISGYA     QEA  LF  MQ  G++
Sbjct: 94  -----------SVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLE 142

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           PDK T +S++SAC+    L+  + +H+ + +     +  V NA+I MYAKCGS+  AR V
Sbjct: 143 PDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRV 202

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F+ M  R+ +SWT++  A+A  G A+ +L  ++ M  E + P+ +T++ VL AC     +
Sbjct: 203 FDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAAL 262

Query: 468 DEGREIFASMTNEYNIPPKYEHYG------CMVDLFGRANLLREALELVETMPFAPNVVI 521
           ++G++I A +          EH+        +  ++ +   +++A E+ E +P   +V+ 
Sbjct: 263 EKGKQIHAQIVES-------EHHSDVRVSTALTKMYIKCGAVKDAREVFECLP-NRDVIA 314

Query: 522 WGSLMAACRVHGEIELAEFAAKQLLQ--LDPDHDGALVLLS 560
           W +++      G++E A     ++L+  + PD    L +LS
Sbjct: 315 WNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILS 355


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 234/552 (42%), Positives = 359/552 (65%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           A  +F ++   ++  ++  I G+  +   D+  + + + K + + PD +    ++ AC++
Sbjct: 66  AAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQ 125

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
            G+L  G   H  II +    D ++Q++L+TMY+  G +  A  +F ++   ++V  T+M
Sbjct: 126 KGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSM 185

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           V+GY ++G V  AR +FD+M EK+L+ WS MISGYA+N+   +A++L+  +Q  G+  ++
Sbjct: 186 VAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANE 245

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
             M+SVI++CAHLG L+  +R H YI +N    +L +  A++DMYA+CGS++ A  VF++
Sbjct: 246 TVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQ 305

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           +  R+ +SWT++I  FA+HG A  AL +F++M+   + P  +TF  VL ACSH GLV+ G
Sbjct: 306 LPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERG 365

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
            E+F SM  +Y I P+ EHYGCMVDL GRA  L EA + V  MP  PN  IWG+L+ ACR
Sbjct: 366 LELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACR 425

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
           +H   E+AE A K L++L P+H G  VLLSNIYA+  +W++V  +R+ MKERG++K    
Sbjct: 426 IHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGY 485

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
           +  EM+ +V++F   D++H +  QI     E++ +++ AGY  +   AL D+++EEK   
Sbjct: 486 TLFEMDGKVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESN 545

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           I  HSEKLA+ Y ++ +K    IRIVKNLRVCEDCH   KL+SKVY RE+++RDR RFHH
Sbjct: 546 IHRHSEKLAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHH 605

Query: 711 YKDGVCSCKDYW 722
           +K G CSC DYW
Sbjct: 606 FKGGACSCMDYW 617



 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 213/460 (46%), Gaps = 81/460 (17%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P  + + SC++L+H+K  HA +++     H+   +     L S S+     + L YA  +
Sbjct: 17  PKLSFLESCTTLSHLKIIHAHLIRA----HTIFDVFAASCLISISI---NKNLLDYAAQV 69

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F QI  P   + N FIR  S S  P  +   +++    GL  D  ++P ++KA  +   L
Sbjct: 70  FYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSL 129

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
             G+Q HG   + GF SD +VQ  LV MY   G I  A  +F ++S  D+V W+ M+ GY
Sbjct: 130 DMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGY 189

Query: 194 FQNG-------------------------------LFDEVLNLFEEMKMSNVEPDEMVLS 222
            ++G                                FD+ + L+  ++   V  +E V+ 
Sbjct: 190 IKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMV 249

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            ++++C+  G L  GE  H++I+ N + ++  L + L+ MYA CG +D A  +FD++  +
Sbjct: 250 SVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGR 309

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           + +  T +++G++                          + GYAE     +AL+ F+ M+
Sbjct: 310 DALSWTTLIAGFA--------------------------MHGYAE-----KALEYFSRME 338

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN------NAIIDMYA 396
             G+ P ++T  +V+SAC+H G++++   +   + +     D R+         ++D+  
Sbjct: 339 KAGLTPREITFTAVLSACSHGGLVERGLELFESMKR-----DYRIEPRLEHYGCMVDLLG 393

Query: 397 KCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNA 435
           + G L  A +    M  + N   W +++ A  IH ++  A
Sbjct: 394 RAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIA 433



 Score = 40.4 bits (93), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 47/241 (19%), Positives = 105/241 (43%), Gaps = 15/241 (6%)

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
           +K  K++ L   +  +HL +      IH ++ +     D+   + +I +      L+ A 
Sbjct: 14  LKNPKLSFLESCTTLSHLKI------IHAHLIRAHTIFDVFAASCLISISINKNLLDYAA 67

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
           +VF +++  N+  + S I  F+   D   +  F+ + K   + P+ +T+  ++ AC+  G
Sbjct: 68  QVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKG 127

Query: 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
            +D G +    +         Y     +V ++     ++ A  +   +    +VV W S+
Sbjct: 128 SLDMGIQAHGQIIRHGFDSDVYVQ-NSLVTMYSTLGDIKSASYVFRRIS-CLDVVSWTSM 185

Query: 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGAL--VLLSNIYAKDKRWQDVGELRKSMKERG 583
           +A     G++     +A++L    P+ +     V++S  YAK+  +    EL   ++  G
Sbjct: 186 VAGYIKSGDVT----SARKLFDKMPEKNLVTWSVMISG-YAKNSFFDKAIELYFLLQSEG 240

Query: 584 I 584
           +
Sbjct: 241 V 241


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/599 (40%), Positives = 366/599 (61%), Gaps = 31/599 (5%)

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           +  + +   + +  QVH   T  G   D  V   L+ M      ++ A L+F+KM  RD 
Sbjct: 7   ISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDP 66

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           V WSVMI G+ +NG ++     F E+  +  +PD   L  ++ AC     L  G  +H  
Sbjct: 67  VSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHST 126

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           ++ N + LD  + STL+ MYA                               + G +++A
Sbjct: 127 VLKNGLHLDNFVCSTLVDMYA-------------------------------KCGMIDNA 155

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
           + +FD+M +KDL+  + MI+GYAE   P E+  LF++M+  G  PDKV M+++++ACA L
Sbjct: 156 KQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKL 215

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
           G +++A+ +H Y+    +  D+ +  A+IDMYAKCGS++S+RE+F+RM ++NVISW++MI
Sbjct: 216 GAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMI 275

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
            A+  HG  R AL  F+ M +  I PN +TFI +LYACSHAGLVD+G ++F+ M+  Y +
Sbjct: 276 GAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGV 335

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
            P  +HY CMVDL GRA  L +AL L+E M    +  IW + + ACR+H +++LAE AAK
Sbjct: 336 RPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAK 395

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
            LL L   + G  +LLSNIYA   RW+DV ++R  M +R + K    + IE++N +Y F 
Sbjct: 396 LLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFG 455

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYG 663
             D SH ++++IYE L  +  +L+ AGYVPD +S L D+++E K  ++  HSEKLA+ +G
Sbjct: 456 AGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFG 515

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LI++   + IRI KNLRVC DCH+F KLVS +  R+I++RD  RFHH+K+G+CSC DYW
Sbjct: 516 LIATPDGTPIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 198/417 (47%), Gaps = 44/417 (10%)

Query: 17  TAISSCSSLTHMKQTHAQILK--LSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIF 74
           + +  C ++  +KQ HAQ+    + H     N LL    + +      T   L+  +   
Sbjct: 8   STLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLY---MCAKHKDLVTAHLLFNKME-- 62

Query: 75  SQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL 134
            + P   S +   F++   +    +   + F +++  G   D FS P ++KA     GL+
Sbjct: 63  ERDPVSWSVMIGGFVKNGDY----ERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLI 118

Query: 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
            G  +H    K G   D FV + LV MY  CG I +A+ +FD+M  +D+V  +VMI GY 
Sbjct: 119 MGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYA 178

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           + G  +E   LF++M+     PD++ +  I++AC++ G ++    VH+++     +LD  
Sbjct: 179 ECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVE 238

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           L + +I MYA CG +D ++ +FD++  KN++  +AM+  Y   GQ               
Sbjct: 239 LGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQ--------------- 283

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA-QRIH 373
                            +EAL+LF+ M   G+ P+++T +S++ AC+H G++D   Q   
Sbjct: 284 ----------------GREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFS 327

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           L         D++    ++D+  + G L+ A  + E M   ++   W + + A  IH
Sbjct: 328 LMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIH 384


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 276/713 (38%), Positives = 407/713 (57%), Gaps = 98/713 (13%)

Query: 6   QPTK--PLTL----PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL 59
           QPT   P  L    P+ T +S+C S  ++KQ H+QI+K +  H++Q +L   +   + S 
Sbjct: 20  QPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIK-TGLHNTQFALSKLIEFCAIS- 77

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
                 +L YAL +F  I  P   + N  IR  S S  P  A+  +++ML  G+  + ++
Sbjct: 78  ---PFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYT 134

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL---------- 169
           FP +LK+ A+     EG Q+HG   KLG  SDPFV T L+ MY   G++           
Sbjct: 135 FPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSS 194

Query: 170 ---------------------DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
                                DAR +F+++  RD V W+ MI GY Q+G F+E L  F+E
Sbjct: 195 LRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQE 254

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           MK +NV P+E  +  +LSAC+++G+L  G  V  +I D+ +                   
Sbjct: 255 MKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLG------------------ 296

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
                         NL +  A++  YS+ G ++ AR +F+ + EKD+I W+ MI GY+  
Sbjct: 297 -------------SNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHM 343

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG-GDLRV 387
           N  +EAL LF +MQ   ++P+ VT +S++ ACA+LG LD  + IH YIDK   G  +  +
Sbjct: 344 NSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSL 403

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
             ++IDMYAKCG++E+A++VF  M+ +++ SW +MI+  A+HG A  AL  F +M+DE  
Sbjct: 404 WTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGF 463

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
           +P+ +TF+GVL ACSHAGLV+ GR+ F+SM  +Y+I PK +HYGCM+DL GRA L  EA 
Sbjct: 464 EPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAE 523

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
            L++ M   P+  IWGSL+ ACRVHG +EL EFAAK L +L+P++ GA VLLSNIYA   
Sbjct: 524 ALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAG 583

Query: 568 RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627
           RW DV  +R  + ++G+ K +         ++Y+ L         D+I +   E     +
Sbjct: 584 RWDDVARIRTKLNDKGMKKXQ---------DIYKML---------DEIDQSFGE-----R 620

Query: 628 PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLR 680
           P G VPD    L D+++E K   +  HSEKLA+ +GLIS+K ++ IRIVKNLR
Sbjct: 621 P-GXVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLR 672


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/684 (38%), Positives = 379/684 (55%), Gaps = 76/684 (11%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGL-TIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
           N  + A  W+     AL +F KM    L + D  S   IL A A     L G QVHG   
Sbjct: 332 NSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSI 391

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           + G   D FV   +V MY  CGK+ +A  +F +M ++D+V W+ M+ GY Q G  +  L+
Sbjct: 392 RSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALS 451

Query: 205 LFEEMKMSNVE-----------------------------------PDEMVLSKILSACS 229
           LFE M   N+E                                   P+ + L  +LSAC 
Sbjct: 452 LFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACV 511

Query: 230 RAGNLSYGEAVHEFIIDNNVALDA--------HLQSTLITMYANCGCMDMAKGLFDKVLL 281
             G L +G+  H + I   + LD          + + LI MYA C   ++A+ +FD V  
Sbjct: 512 SVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSP 571

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           K                             ++D++ W+ MI GYA++     AL+LF+ M
Sbjct: 572 K-----------------------------DRDVVTWTVMIGGYAQHGDANNALQLFSGM 602

Query: 342 QVC--GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD-LRVNNAIIDMYAKC 398
                 +KP+  T+   + ACA L  L   +++H Y+ +N +G   L V N +IDMY+K 
Sbjct: 603 FKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKS 662

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G +++A+ VF+ M +RN +SWTS++  + +HG   +AL  F++M+   + P+G+TF+ VL
Sbjct: 663 GDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVL 722

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
           YACSH+G+VD G   F  M+ ++ + P  EHY CMVDL+GRA  L EA++L+  MP  P 
Sbjct: 723 YACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPT 782

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
            V+W +L++ACR+H  +EL EFAA +LL+L+  +DG+  LLSNIYA  +RW+DV  +R +
Sbjct: 783 PVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYT 842

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           MK  GI K   CS I+    V  F   DRSH Q+ QIYE L ++I  +K  GYVP    A
Sbjct: 843 MKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFA 902

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           L D++DEEK +++  HSEKLAL YG+++    + IRI KNLR+C DCH+ I  +SK+   
Sbjct: 903 LHDVDDEEKGDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEH 962

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EI++RD +RFHH+K+G CSCK YW
Sbjct: 963 EIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 190/572 (33%), Positives = 296/572 (51%), Gaps = 35/572 (6%)

Query: 12  TLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYAL 71
           T+P  TA+  C+SL H K  H Q +            LL  L T+        +S  YA+
Sbjct: 162 TIPI-TALKECNSLAHAKLLHQQSIMQG---------LLFHLATNLIGTYIASNSTAYAI 211

Query: 72  SIFSQIPAPPSRV--SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
            +  ++P  PS V   N+ IR       P+    ++ +M + G T D ++FP + KA A 
Sbjct: 212 LLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACAN 271

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR---DIVPW 186
              L  G  +H   ++ GF S+ FV   +V MYG CG +  A  MFD + +R   D+V W
Sbjct: 272 LSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSW 331

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNV-EPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           + ++  Y      +  L LF +M   ++  PD + L  IL AC+       G  VH F I
Sbjct: 332 NSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSI 391

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
            + +  D  + + ++ MYA CG M+ A  +F ++  K++V   AMV+GYS+AG++E A  
Sbjct: 392 RSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALS 451

Query: 306 IFDQMVEK----DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
           +F++M E+    D++ W+A+I+GYA+     EAL +F +M  CG +P+ VT++S++SAC 
Sbjct: 452 LFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACV 511

Query: 362 HLGVLDQAQRIHLYIDK--------NAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-- 411
            +G L   +  H Y  K        +    DL+V N +IDMYAKC S E AR++F+ +  
Sbjct: 512 SVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSP 571

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKM--KDESIDPNGVTFIGVLYACSHAGLVDE 469
           + R+V++WT MI  +A HGDA NAL  F+ M   D+SI PN  T    L AC+    +  
Sbjct: 572 KDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRF 631

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           GR++ A +   +          C++D++ ++  +  A  + + MP   N V W SLM   
Sbjct: 632 GRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMP-QRNAVSWTSLMTGY 690

Query: 530 RVHGEIE--LAEFAAKQLLQLDPDHDGALVLL 559
            +HG  E  L  F   + + L PD    LV+L
Sbjct: 691 GMHGRGEDALRVFDEMRKVPLVPDGITFLVVL 722


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 411/712 (57%), Gaps = 14/712 (1%)

Query: 17  TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
           + + +CSSL   ++ H ++    +S       L   L+T ++       S+  A  +F  
Sbjct: 115 SVLGACSSLAQGREIHNRVF---YSGLDSFQSLANALVTMYA----RFGSVGDAKRMFQS 167

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
           +        N  I A S S     AL++F +M  + +  +  ++  ++   +  E L EG
Sbjct: 168 LQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEG 226

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
            ++H      GF +D  V T L+ MYG CG   +AR +FDKM  RD+V W+VMI  Y  N
Sbjct: 227 RKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLN 286

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           G F E L L++++ M   +  +     IL ACS    L+ G  VH  I++  +  +  + 
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVA 346

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL---IFDQMVEK 313
           + L+ MYA CG ++ A+ +F+ +  ++ V  + ++  Y+  G  +DAR    +FD++  +
Sbjct: 347 TALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSR 406

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQ-VCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           D I W+AMI+ Y +N     A+K+F EM    G+KPD VT ++V+ ACA LG L + + +
Sbjct: 407 DTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKAL 466

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H  I ++    ++ V N +I+MYA+CGSLE A  +F   + + V+SWT+M+ AF+ +G  
Sbjct: 467 HAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRY 526

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
             AL  F +M  E + P+ VT+  +L+ C+H G +++G   F  M   + + P  +H+  
Sbjct: 527 AEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAA 586

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           MVDL GR+  L +A EL+E+MPF P+ V W + + ACR+HG++EL E AA+++ +LDP  
Sbjct: 587 MVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSS 646

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
               + +SNIYA    W+ V  +RK M+ERG+ K    S IE++ +++EF +  + H +T
Sbjct: 647 TAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRT 706

Query: 613 DQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS- 671
           D+I E+L  +   ++ AGYVPD  + L D+ + EK  ++L+HSEK+A+ +GL+SS+    
Sbjct: 707 DEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGE 766

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHY-KDGVCSCKDYW 722
            IR+VKNLRVC DCH   K ++++  R+I++RD  RFH +  DG CSC DYW
Sbjct: 767 PIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 176/703 (25%), Positives = 294/703 (41%), Gaps = 131/703 (18%)

Query: 9   KPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY 68
           +P  +   T + SCSS   + +  A   ++  S   +++++   L++ +        SL 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYG----KCDSLV 59

Query: 69  YALSIFSQIPAPPSRVS--NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
            A S+F  +      V   N  I A + +     AL ++ +M  +GL  D  +F  +L A
Sbjct: 60  DARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGA 119

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            +    L +G ++H      G  S   +   LV MY   G + DA+ MF  +  RD   W
Sbjct: 120 CS---SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSW 176

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +I  + Q+G +   L +F+EMK  +V+P+      ++S  S    L  G  +H  I+ 
Sbjct: 177 NAVILAHSQSGDWSGALRIFKEMK-CDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVA 235

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
           N    D  + + LI MY  CG    A+ +FDK                            
Sbjct: 236 NGFDTDLVVATALINMYGKCGSSHEAREVFDK---------------------------- 267

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
              M ++D++ W+ MI  Y  N    EAL+L+ ++ + G K  K T +S++ AC+ +  L
Sbjct: 268 ---MKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKAL 324

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
            Q + +H +I +     ++ V  A+++MYAKCGSLE AR+VF  M+ R+ ++W+++I A+
Sbjct: 325 AQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAY 384

Query: 427 AIHG---DARNALIFFNKMKDE--------------------------------SIDPNG 451
           A +G   DAR A   F+++                                    + P+ 
Sbjct: 385 ASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDA 444

Query: 452 VTFIGVLYACSHAGLVDEGREIFA---------------SMTNEYNIPPKYEH------- 489
           VTFI VL AC+  G + E + + A               ++ N Y      E        
Sbjct: 445 VTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAA 504

Query: 490 --------YGCMVDLFGRANLLREALELVETMPF---APNVVIWGSLMAACRVHGEIE-- 536
                   +  MV  F +     EAL+L + M      P+ V + S++  C   G +E  
Sbjct: 505 AKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQG 564

Query: 537 ---LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
                + A    L    DH  A+V   ++  +  R  D  EL +SM              
Sbjct: 565 WRYFTDMAELHALAPTADHFAAMV---DLLGRSGRLFDAKELLESMP------------F 609

Query: 594 EMNNEVY-EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
           E +   +  FLTA R H +  ++ E   E + EL P+   P I
Sbjct: 610 EPDPVAWMTFLTACRIHGKL-ELGEAAAERVYELDPSSTAPYI 651


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 253/625 (40%), Positives = 388/625 (62%), Gaps = 2/625 (0%)

Query: 99  KHALKVFLKML-NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           K A+ +F +M+ +E +T +  +   ++ A A+ E L  G +V+      G   +  + + 
Sbjct: 217 KDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSA 276

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           LV MY  C  I  A+ +FD+    ++   + M   Y + GL  E L +F  M  S V PD
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPD 336

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
            + +   +S+CS+  N+ +G++ H +++ N      ++ + LI MY  C   D A  +FD
Sbjct: 337 RISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFD 396

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
           ++  K +V   ++V+GY   G+V+ A   F+ M EK+++ W+ +ISG  + +  +EA+++
Sbjct: 397 RMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEV 456

Query: 338 FNEMQVC-GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           F  MQ   G+  D VTM+S+ SAC HLG LD A+ I+ YI+KN    D+R+   ++DM++
Sbjct: 457 FCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFS 516

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           +CG  ESA  +F  +  R+V +WT+ I A A+ G+A  A+  F+ M ++ + P+GV F+G
Sbjct: 517 RCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVG 576

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
            L ACSH GLV +G+EIF SM   + + P+  HYGCMVDL GRA LL EA++L+E MP  
Sbjct: 577 ALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPME 636

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
           PN VIW SL+AACRV G +E+A +AA+++  L P+  G+ VLLSN+YA   RW D+ ++R
Sbjct: 637 PNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVR 696

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
            SMKE+G+ K    S I++  + +EF + D SH +   I   L+EV       G+VPD+ 
Sbjct: 697 LSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLS 756

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
           + L+D++++EK  ++  HSEKLA+ YGLISS K + IRIVKNLRVC DCH+F K  SKVY
Sbjct: 757 NVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVY 816

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDY 721
            REI++RD  RFH+ + G CSC D+
Sbjct: 817 NREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 143/488 (29%), Positives = 250/488 (51%), Gaps = 45/488 (9%)

Query: 2   STLSQPT----KPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSF 57
           +T ++P+       T  T +++ +C ++  +K  H  + K      +  S + KL+  S 
Sbjct: 18  TTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTK--QGLDNDVSTITKLVARSC 75

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPS-RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTID 116
            L T    SL +A  +F    +  +  + N  IR  + S     A+ +FL+M+N G++ D
Sbjct: 76  ELGTR--ESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPD 133

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
           +++FP  L A A++     G+Q+HGL  K+G+  D FVQ  LV  Y  CG++  AR +FD
Sbjct: 134 KYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFD 193

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLS 235
           +MS R++V W+ MI GY +     + ++LF  M +   V P+ + +  ++SAC++  +L 
Sbjct: 194 EMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLE 253

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            GE V+ FI ++ + ++  + S L+ MY  C  +D+AK LFD+    NL +  AM S Y 
Sbjct: 254 TGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYV 313

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           R G                                 +EAL +FN M   G++PD+++MLS
Sbjct: 314 RQGLT-------------------------------REALGVFNLMMDSGVRPDRISMLS 342

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
            IS+C+ L  +   +  H Y+ +N F     + NA+IDMY KC   ++A  +F+RM  + 
Sbjct: 343 AISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKT 402

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V++W S++  +  +G+   A   F  M +++I    V++  ++       L +E  E+F 
Sbjct: 403 VVTWNSIVAGYVENGEVDAAWETFETMPEKNI----VSWNTIISGLVQGSLFEEAIEVFC 458

Query: 476 SMTNEYNI 483
           SM ++  +
Sbjct: 459 SMQSQEGV 466


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 278/720 (38%), Positives = 382/720 (53%), Gaps = 41/720 (5%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTT 63
           L   T  L++  ++AI+S  +L  +K+ H         H  +   +  L + +  +    
Sbjct: 229 LPNLTTYLSILNASAITSTGALEWVKEVH--------KHAGKAGFISDLRVGNALIHMYA 280

Query: 64  P-SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
              S+  A  +F  +        N  I  ++ +     A  +FLKM  EG   D  ++  
Sbjct: 281 KCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLS 340

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +L             +VH    ++G  SD  V +  V MY  CG I DA+L+FDK++ R+
Sbjct: 341 LLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRN 400

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +  W+ MI G  Q     E L+LF +M+     PD      ILSA      L + + VH 
Sbjct: 401 VTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHS 460

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           + ID                           GL D      L V  A+V  Y++ G    
Sbjct: 461 YAID--------------------------AGLVD------LRVGNALVHMYAKCGNTMY 488

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           A+ +FD MVE+++  W+ MISG A++    EA  LF +M   G+ PD  T +S++SACA 
Sbjct: 489 AKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACAS 548

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
            G L+  + +H +        DLRV NA++ MYAKCGS++ AR VF+ M  R+V SWT M
Sbjct: 549 TGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVM 608

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I   A HG   +AL  F KMK E   PNG +F+ VL ACSHAGLVDEGR  F S+T +Y 
Sbjct: 609 IGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYG 668

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           I P  EHY CMVDL GRA  L EA   +  MP  P    WG+L+ AC  +G +E+AEFAA
Sbjct: 669 IEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAA 728

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           K+ L+L P      VLLSNIYA    W+    +R  M+ RGI KE   S IE++N+++ F
Sbjct: 729 KERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSF 788

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
           +  D SH ++ +IY KL ++I  LK  GYVPD    L + + E K + +  HSEKLA+ Y
Sbjct: 789 VVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHSEKLAIVY 848

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           GL+ +   + IR+ KNLRVC DCH   K +SKV  REIV RD  RFHH+KDGVCSC DYW
Sbjct: 849 GLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 186/360 (51%), Gaps = 33/360 (9%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A+KV+ +M  EG   +  ++  ILKA      L  G ++H    + GF SD  V+T LV 
Sbjct: 14  AMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVN 73

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG I DA+L+FDKM  R+++ W+VMI G    G   E  + F +M+     P+   
Sbjct: 74  MYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYT 133

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
              IL+A + AG L + + VH   ++  +ALD  + + L+ MYA  G +D A+ +FD ++
Sbjct: 134 YVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMV 193

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            +++   T M+ G ++ G+                                QEA  LF +
Sbjct: 194 ERDIFSWTVMIGGLAQHGR-------------------------------GQEAFSLFLQ 222

Query: 341 MQVCGMKPDKVTMLSVISACA--HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           M+  G  P+  T LS+++A A    G L+  + +H +  K  F  DLRV NA+I MYAKC
Sbjct: 223 MERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKC 282

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           GS++ AR VF+ M  R+VISW +MI   A +G    A   F KM+ E   P+  T++ +L
Sbjct: 283 GSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLL 342



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 149/566 (26%), Positives = 235/566 (41%), Gaps = 72/566 (12%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP 64
            QP +   L    A  S  SL   K+ HA I++       Q+ + ++  L +  +     
Sbjct: 26  GQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGF----QSDVRVETALVNMYVKC--- 78

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
            S+  A  IF ++           I  ++   R + A   FL+M  EG   + +++  IL
Sbjct: 79  GSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSIL 138

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            A A A  L    +VH      G   D  V   LV MY   G I DAR++FD M  RDI 
Sbjct: 139 NANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIF 198

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL--SACSRAGNLSYGEAVHE 242
            W+VMI G  Q+G   E  +LF +M+     P+      IL  SA +  G L + + VH+
Sbjct: 199 SWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHK 258

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
                    D  + + LI MYA CG +D A+ +FD +  ++++   AM+ G         
Sbjct: 259 HAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGG--------- 309

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
                                  A+N    EA  +F +MQ  G  PD  T LS+++    
Sbjct: 310 ----------------------LAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVS 347

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
            G  +  + +H +  +     DLRV +A + MY +CGS++ A+ +F+++  RNV +W +M
Sbjct: 348 TGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAM 407

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA----------------CSHAGL 466
           I   A     R AL  F +M+ E   P+  TF+ +L A                   AGL
Sbjct: 408 IGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL 467

Query: 467 VDE-------------GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
           VD              G  ++A    +  +      +  M+    +     EA  L   M
Sbjct: 468 VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQM 527

Query: 514 ---PFAPNVVIWGSLMAACRVHGEIE 536
                 P+   + S+++AC   G +E
Sbjct: 528 LREGIVPDATTYVSILSACASTGALE 553



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 186/403 (46%), Gaps = 38/403 (9%)

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI GY + G  ++ + ++ +M+    +P+E+    IL AC    +L +G+ +H  II + 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D  +++ L+ MY  C                               G ++DA+LIFD
Sbjct: 61  FQSDVRVETALVNMYVKC-------------------------------GSIDDAQLIFD 89

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           +MVE+++I W+ MI G A     QEA   F +MQ  G  P+  T +S+++A A  G L+ 
Sbjct: 90  KMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEW 149

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            + +H +        DLRV NA++ MYAK GS++ AR VF+ M  R++ SWT MI   A 
Sbjct: 150 VKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQ 209

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVL--YACSHAGLVDEGREIFASMTNEYNIPPK 486
           HG  + A   F +M+     PN  T++ +L   A +  G ++  +E+      +      
Sbjct: 210 HGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVH-KHAGKAGFISD 268

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH--GEIELAEFAAKQ 544
                 ++ ++ +   + +A  + + M    +V+ W +++     +  G      F   Q
Sbjct: 269 LRVGNALIHMYAKCGSIDDARLVFDGMC-DRDVISWNAMIGGLAQNGCGHEAFTIFLKMQ 327

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587
                PD    L LL N +     W+ V E+ K   E G++ +
Sbjct: 328 QEGFVPDSTTYLSLL-NTHVSTGAWEWVKEVHKHAVEVGLVSD 369


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 255/657 (38%), Positives = 380/657 (57%), Gaps = 35/657 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P          I         + A+ +FL M+  G   DRF+   ++ A A 
Sbjct: 98  AYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAE 157

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC---GKILDARLMFDKMSYRDIVPW 186
              L  G Q H L  K G   D  V   LV MY  C   G + DAR +FD+M   +++ W
Sbjct: 158 MGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSW 217

Query: 187 SVMIDGYFQNGLFD-EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           + +I GY Q+G  D E + LF EM    V+P+    S +L AC+   ++  GE V+  ++
Sbjct: 218 TAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVV 277

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
              +A              NC                   V  +++S YSR G +E+AR 
Sbjct: 278 KMRLA------------SINC-------------------VGNSLISMYSRCGNMENARK 306

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
            FD + EK+L+ ++ +++ YA++ + +EA +LFNE++  G   +  T  S++S  + +G 
Sbjct: 307 AFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGA 366

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           + + ++IH  I K+ F  +L + NA+I MY++CG++E+A +VF  M   NVISWTSMI  
Sbjct: 367 IGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITG 426

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
           FA HG A  AL  F+KM +  + PN VT+I VL ACSH GL+ EG + F SM  E+ I P
Sbjct: 427 FAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVP 486

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
           + EHY C+VDL GR+  L EA+ELV +MPF  + ++  + + ACRVHG ++L + AA+ +
Sbjct: 487 RMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMI 546

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
           L+ DP    A +LLSN++A   +W++V E+RK MKER + KE  CS IE+ N+V++F   
Sbjct: 547 LEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVG 606

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           D SH Q  +IY++L+++  ++K  GY+P     L D+E+E+K + +  HSEK+A+ YG I
Sbjct: 607 DTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFI 666

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S+     IR+ KNLRVC DCH   K  S V  +EIV+RD  RFHH+KDG CSC DYW
Sbjct: 667 STSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/456 (26%), Positives = 220/456 (48%), Gaps = 46/456 (10%)

Query: 92  ISWS---------HRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGL 142
           +SWS          +   A+  F  ML  G   + + F  + +A +  E +  G  + G 
Sbjct: 8   VSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGF 67

Query: 143 GTKLG-FGSDPFVQTGLVGMY-GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
             K G F SD  V   L+ M+    G +  A  +FD+M  R++V W++MI  + Q G   
Sbjct: 68  LLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSR 127

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
           + ++LF +M +S   PD   LS ++SAC+  G LS G   H  ++ + + LD  +  +L+
Sbjct: 128 DAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLV 187

Query: 261 TMYANC---GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
            MYA C   G +D A+ +FD++ + N++  TA+++GY ++G  +                
Sbjct: 188 DMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCD---------------- 231

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
                         +EA++LF EM    +KP+  T  SV+ ACA+L  +   ++++  + 
Sbjct: 232 --------------REAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVV 277

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           K        V N++I MY++CG++E+AR+ F+ +  +N++S+ +++NA+A   ++  A  
Sbjct: 278 KMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFE 337

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            FN+++      N  TF  +L   S  G + +G +I + +               ++ ++
Sbjct: 338 LFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKS-GFKSNLHICNALISMY 396

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            R   +  A ++   M    NV+ W S++     HG
Sbjct: 397 SRCGNIEAAFQVFNEMG-DGNVISWTSMITGFAKHG 431



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 154/300 (51%), Gaps = 35/300 (11%)

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           RD+V WS +I  Y  N    E ++ F +M      P+E   + +  ACS   N+S G+ +
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA-GQ 299
             F++                            G F+     ++ V  A++  + +  G 
Sbjct: 65  FGFLLKT--------------------------GYFE----SDVCVGCALIDMFVKGNGD 94

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           +E A  +FD+M +++++ W+ MI+ + +    ++A+ LF +M + G  PD+ T+  V+SA
Sbjct: 95  LESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSA 154

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC---GSLESAREVFERMRRRNV 416
           CA +G+L   ++ H  + K+    D+ V  +++DMYAKC   GS++ AR+VF+RM   NV
Sbjct: 155 CAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNV 214

Query: 417 ISWTSMINAFAIHGDA-RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           +SWT++I  +   G   R A+  F +M    + PN  TF  VL AC++   +  G +++A
Sbjct: 215 MSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYA 274



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 9/223 (4%)

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           ++DL+ WSA+IS YA N    EA+  F +M  CG  P++     V  AC++   +   + 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 372 IHLYIDKNA-FGGDLRVNNAIIDMYAKC-GSLESAREVFERMRRRNVISWTSMINAFAIH 429
           I  ++ K   F  D+ V  A+IDM+ K  G LESA +VF+RM  RNV++WT MI  F   
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G +R+A+  F  M      P+  T  GV+ AC+  GL+  GR+ F  +  +  +      
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQ-FHCLVMKSGLDLDV-C 181

Query: 490 YGC-MVDLFGRA---NLLREALELVETMPFAPNVVIWGSLMAA 528
            GC +VD++ +      + +A ++ + MP   NV+ W +++  
Sbjct: 182 VGCSLVDMYAKCVADGSVDDARKVFDRMP-VHNVMSWTAIITG 223


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 258/624 (41%), Positives = 378/624 (60%), Gaps = 42/624 (6%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYG--ACGKILD---ARLMFDKMSYRDIVPWSVMIDG 192
           Q H L  + G   D ++   LV  Y   +  + L    +  +FD +   ++  W+ MI  
Sbjct: 53  QAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKV 112

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
             +N    + + L+ EM +++  P++     +L ACS +G ++ G  VH  ++ + +  D
Sbjct: 113 CIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGD 172

Query: 253 AHLQSTLITMYANCG-------------------C-------------MDMAKGLFDKVL 280
            H+ S+ I MYA+ G                   C             ++ A+ LF+ + 
Sbjct: 173 GHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMP 232

Query: 281 LKNLVVS-TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
            ++++ +  AM+SG+SR G VE AR  FD+M E+D I WSAMI GY +     EAL++F+
Sbjct: 233 DRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFH 292

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           +MQ   ++P K  + SV+SACA+LG LDQ + IH Y  +N+   D  +  +++DMYAKCG
Sbjct: 293 QMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCG 352

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
            ++ A EVFE+M  + V SW +MI   A+HG A +A+  F+KM    I PN +TF+GVL 
Sbjct: 353 RIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLN 409

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           AC+H GLV +G  IF SM  EY + P+ EHYGC+VDL GRA LL EA ++V ++P  P  
Sbjct: 410 ACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTP 469

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
            +WG+L+ ACR HG +EL E   K LL+L+P + G   LLSNIYAK  RW++VGE+RK M
Sbjct: 470 AVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLM 529

Query: 580 KERGILKERACSRIEMN-NEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           KERGI      S I++   EV++F+  D SH Q   IY+ L++V   L+  GY PD    
Sbjct: 530 KERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQV 589

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           L D+++EEK   +  HSEKLA+ +GLI++   + IRIVKNLRVCEDCH+  KL+S+VY R
Sbjct: 590 LFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNR 649

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EI++RDR R+HH+++G CSCKD+W
Sbjct: 650 EIIVRDRIRYHHFRNGACSCKDFW 673



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/455 (25%), Positives = 223/455 (49%), Gaps = 62/455 (13%)

Query: 23  SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFS-LPTTTPSSLYYALSIFSQIPAPP 81
           +SL H+KQ HA IL+   + H Q+S +   L+ S++ + T    S   +L +F  +  P 
Sbjct: 46  TSLHHLKQAHALILR---TGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPN 102

Query: 82  SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG 141
             + N  I+    ++ P  A+ ++ +M+      +++++P +LKA + +  + EG+QVH 
Sbjct: 103 VFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHA 162

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACGKILDA-RLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
              K G G D  + +  + MY + G++++A R++ DK    D V W+ MIDGY + G  +
Sbjct: 163 HLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVE 222

Query: 201 EVLNLFEEMKMSNVEPDEMVLSK---ILSACSRAGNLSYGEAVHEFI--------IDNNV 249
               LFE M      PD  ++S    ++S  SR G +   E   EF         I  + 
Sbjct: 223 AARELFEGM------PDRSMISTWNAMISGFSRCGMV---EVAREFFDEMKERDEISWSA 273

Query: 250 ALDAHLQS--------------------------TLITMYANCGCMDMAKGLFDKVLLKN 283
            +D ++Q                           ++++  AN G +D  + +       +
Sbjct: 274 MIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNS 333

Query: 284 L----VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
           +    V+ T++V  Y++ G+++ A  +F++M  K++  W+AMI G A +   ++A+ LF+
Sbjct: 334 IQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFS 393

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAK 397
           +M +    P+++T + V++ACAH G++ +   I   + K  +G + ++ +   I+D+  +
Sbjct: 394 KMDI---YPNEITFVGVLNACAHGGLVQKGLTIFNSMRKE-YGVEPQIEHYGCIVDLLGR 449

Query: 398 CGSLESAREVFERMRRRNVIS-WTSMINAFAIHGD 431
            G L  A +V   +      + W +++ A   HG+
Sbjct: 450 AGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGN 484


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/641 (39%), Positives = 382/641 (59%), Gaps = 38/641 (5%)

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           SF  + KA+ +   +    ++H +   L    +P +   L+  Y ACG+    R +FD+M
Sbjct: 20  SFGLLAKALDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEM 79

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
           S R++V ++VMI  Y  N  +D+ L +F EM      PD      +L ACS + NL YG 
Sbjct: 80  SDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGL 139

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
            +H  ++   +  +  + + LI MY  CGC+  A+ +FD+++ K++V   +MV+GY+   
Sbjct: 140 LIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNM 199

Query: 299 QVEDA-------------------------------------RLIFDQMVEKDLICWSAM 321
           + +DA                                       IF  +  K+LI W+ M
Sbjct: 200 RFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVM 259

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF 381
           I  Y +N+ P +A+ L+ +M+ C ++PD +T  SV+ AC  L  L   +RIH Y++K   
Sbjct: 260 IRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKL 319

Query: 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNK 441
             +L + N++IDMYA+CG L+ A+ VF+RM+ R+V SWTS+I+A+ + G   NA+  F +
Sbjct: 320 CPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTE 379

Query: 442 MKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501
           M +    P+ + F+ +L ACSH+GL+DEGR  F  MT++Y I P+ EHY C+VDL GRA 
Sbjct: 380 MLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAG 439

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSN 561
            + EA  +++ MP  PN  +W +L+++CRV   +++   AA  LLQL P+  G  VLLSN
Sbjct: 440 RVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSN 499

Query: 562 IYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNE 621
           IYAK  RW++V E+R  MK + I K    S +E+NN+V+ FL  D SH Q+ +IYE+L  
Sbjct: 500 IYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGV 559

Query: 622 VISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRV 681
           +++++K  GYVP+  SAL D+E+E+K   +  HSEKLA+ + L+++++   IRI KNLRV
Sbjct: 560 LVAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQEYQ-IRITKNLRV 618

Query: 682 CEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           C DCH   KL+SK+  REI++RD  RFHH+KDGVCSC DYW
Sbjct: 619 CGDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 213/437 (48%), Gaps = 51/437 (11%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL--PTTTPSSLYYALSI 73
           + A+     +  +K+ H  I  L+   H   SL +KL+ +  +   P  T         +
Sbjct: 25  AKALDQNPDIKTLKKLHTMIFYLNS--HQNPSLGIKLMRSYAACGEPGLTRK-------V 75

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F ++        N  IR+   +HR    L VF +M+N G   D +++P +LKA + +E L
Sbjct: 76  FDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENL 135

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
             G+ +HG   K+G   + FV  GL+ MYG CG + +AR +FD+M ++D+V W+ M+ GY
Sbjct: 136 RYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGY 195

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG--NLSYGEAV-----HEFIID 246
             N  FD+ L +  EM+    +PD   ++ ++ A +     N+ Y E +      + +I 
Sbjct: 196 AHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLIS 255

Query: 247 NNVALDAHLQSTLITMYANC---------------------GCMDMAKGLF--------- 276
            NV +  +++++L T   +                       C D++  L          
Sbjct: 256 WNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVE 315

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
            K L  NL++  +++  Y+R G ++DA+ +FD+M  +D+  W+++IS Y        A+ 
Sbjct: 316 KKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVA 375

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDM 394
           LF EM   G  PD +  ++++SAC+H G+LD+  RI+     + +    R+ +   ++D+
Sbjct: 376 LFTEMLNSGQAPDSIAFVAILSACSHSGLLDEG-RIYFKQMTDDYRITPRIEHYACLVDL 434

Query: 395 YAKCGSLESAREVFERM 411
             + G ++ A  + ++M
Sbjct: 435 LGRAGRVDEAYNIIKQM 451


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 258/658 (39%), Positives = 382/658 (58%), Gaps = 42/658 (6%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++F ++P       N  I   + +   K AL + L+M  EG   D  +   IL A+A 
Sbjct: 84  AYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVAD 143

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  GM VHG   + GF S   V T LV MY  CG +  AR++FD M +R +V W+ M
Sbjct: 144 TRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSM 203

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           IDGY Q+G  +  + +F++M    V+P  + +   L AC+  G+L  G+ VH+ +    +
Sbjct: 204 IDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKL 263

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             D  + ++LI+MY+ C                                +V+ A  IF  
Sbjct: 264 DSDVSVMNSLISMYSKCK-------------------------------RVDIAADIFKN 292

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           +  K L+ W+AMI GYA+N    EAL  F EMQ   +KPD  TM+SVI A A L +  QA
Sbjct: 293 LRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQA 352

Query: 370 QRIH-----LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
           + IH      ++DKN F     V  A++DMYAKCG++ +AR++F+ M  R+VI+W +MI+
Sbjct: 353 KWIHGLVIRRFLDKNVF-----VMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMID 407

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
            +  HG  + ++  F +MK  +I PN +TF+  L ACSH+GLV+EG   F SM  +Y I 
Sbjct: 408 GYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIE 467

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P  +HYG MVDL GRA  L +A + ++ MP  P + ++G+++ AC++H  ++L E AA +
Sbjct: 468 PTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFE 527

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           + +L+PD  G  VLL+NIYA    W  V ++R  M++ G+ K   CS +E+ NEV+ F +
Sbjct: 528 IFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYS 587

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
              SH Q+ +IY  L  ++ E++ AGYVPD +S + D+ED+ K +++  HSEKLA+ +GL
Sbjct: 588 GTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNS-IHDVEDDVKVQLLNTHSEKLAIAFGL 646

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +++   + I I KNLRVC DCHN  K +S V  REI++RD  RFH +KDGVCSC DYW
Sbjct: 647 LNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 212/433 (48%), Gaps = 33/433 (7%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL  F +M ++ +    ++F  +LK       L  G ++HG     GF  + F  TG+V 
Sbjct: 14  ALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVN 73

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  C +I DA  MFD+M  RD+V W+ MI GY QNG     L L   M      PD + 
Sbjct: 74  MYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSIT 133

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           +  IL A +    L  G AVH +++        ++ + L+ MY+ CG + +A+ +FD + 
Sbjct: 134 IVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMD 193

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            + +V   +M+ GY ++G  E A LIF +M+++                           
Sbjct: 194 HRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDE--------------------------- 226

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
               G++P  VT++  + ACA LG L++ + +H  +D+     D+ V N++I MY+KC  
Sbjct: 227 ----GVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKR 282

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           ++ A ++F+ +R + ++SW +MI  +A +G    AL  F +M+  +I P+  T + V+ A
Sbjct: 283 VDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPA 342

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
            +   +  + + I   +   + +         +VD++ +   +  A +L + M  A +V+
Sbjct: 343 LAELSIPRQAKWIHGLVIRRF-LDKNVFVMTALVDMYAKCGAIHTARKLFDMMN-ARHVI 400

Query: 521 IWGSLMAACRVHG 533
            W +++     HG
Sbjct: 401 TWNAMIDGYGTHG 413



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 178/365 (48%), Gaps = 35/365 (9%)

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           M+ GY ++   D  L+ F  MK  +V P     + +L  C    +L  G+ +H  +I + 
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
            +                                NL   T +V+ Y++  Q+ DA  +FD
Sbjct: 61  FSW-------------------------------NLFAMTGVVNMYAKCRQINDAYNMFD 89

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           +M E+DL+CW+ MISGYA+N   + AL L   M   G +PD +T++S++ A A   +L  
Sbjct: 90  RMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRI 149

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
              +H Y+ +  F   + V+ A++DMY+KCGS+  AR +F+ M  R V+SW SMI+ +  
Sbjct: 150 GMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQ 209

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
            GDA  A++ F KM DE + P  VT +G L+AC+  G ++ G+ +   + ++  +     
Sbjct: 210 SGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVH-KLVDQLKLDSDVS 268

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLL 546
               ++ ++ +   +  A ++ + +     +V W +++     +G +   L  F   Q  
Sbjct: 269 VMNSLISMYSKCKRVDIAADIFKNLR-NKTLVSWNAMILGYAQNGCVNEALNAFCEMQSR 327

Query: 547 QLDPD 551
            + PD
Sbjct: 328 NIKPD 332



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 141/304 (46%), Gaps = 36/304 (11%)

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           M+ GYA+++    AL  F+ M+   ++P       ++  C     L + + IH  +  + 
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
           F  +L     +++MYAKC  +  A  +F+RM  R+++ W +MI+ +A +G A+ AL+   
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGLVDEG--------REIFASMTNEYN---------- 482
           +M +E   P+ +T + +L A +   L+  G        R  F S+ N             
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 483 -------IPPKYEH-----YGCMVDLFGRANLLREALELVETM---PFAP-NVVIWGSLM 526
                  I    +H     +  M+D + ++     A+ + + M      P NV + G+L 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGAL- 239

Query: 527 AACRVHGEIELAEFAAKQLLQLDPDHDGALV-LLSNIYAKDKRWQDVGELRKSMKERGIL 585
            AC   G++E  +F  K + QL  D D +++  L ++Y+K KR     ++ K+++ + ++
Sbjct: 240 HACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLV 299

Query: 586 KERA 589
              A
Sbjct: 300 SWNA 303


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/684 (37%), Positives = 398/684 (58%), Gaps = 35/684 (5%)

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F Q+P   S      I       +   A++V   M+ EG+   +F+   +L ++A    +
Sbjct: 103 FDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCM 162

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM--------------- 178
             G +VH    KLG   +  V   L+ MY  CG  + A+ +FD+M               
Sbjct: 163 ETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALH 222

Query: 179 ----------------SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVL 221
                           + RDIV W+ MI G+ Q G     L++F +M + S + PD   L
Sbjct: 223 MQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTL 282

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           + +LSAC+    L  G+ +H  I+     +   + + LI+MY+ CG ++ A+ L ++   
Sbjct: 283 ASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGT 342

Query: 282 KNLVVS--TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
           K+L +   TA++ GY + G +  A+ IF  + ++D++ W+AMI GY ++    EA+ LF 
Sbjct: 343 KDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFR 402

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
            M   G +P+  T+ +++S  + L  L   ++IH    K+     + V+NA+I MYAK G
Sbjct: 403 SMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAG 462

Query: 400 SLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           ++ SA   F+ +R  R+ +SWTSMI A A HG A  AL  F  M  E + P+ +T++GV 
Sbjct: 463 NITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVF 522

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            AC+HAGLV++GR+ F  M +   I P   HY CMVDLFGRA LL+EA E +E MP  P+
Sbjct: 523 SACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPD 582

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
           VV WGSL++ACRVH  I+L + AA++LL L+P++ GA   L+N+Y+   +W++  ++RKS
Sbjct: 583 VVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKS 642

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           MK+  + KE+  S IE+ ++V+ F   D +H + ++IY  + ++  E+K  GYVPD  S 
Sbjct: 643 MKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASV 702

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           L DLE+E K +++  HSEKLA+ +GLIS+   + +RI+KNLRVC DCH  IK +SK+  R
Sbjct: 703 LHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGR 762

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EI++RD TRFHH+KDG CSC+DYW
Sbjct: 763 EIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 226/495 (45%), Gaps = 68/495 (13%)

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY---- 180
           K++ ++ G      VH    K G     ++   L+ +Y   G  L AR +FD+M      
Sbjct: 22  KSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAF 81

Query: 181 ---------------------------RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN 213
                                      RD V W+ MI GY   G + + + +  +M    
Sbjct: 82  SWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEG 141

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           +EP +  L+ +L++ +    +  G+ VH FI+   +  +  + ++L+ MYA CG   MAK
Sbjct: 142 IEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAK 201

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
            +FD+++++++    AM++ + + GQ++ A   F+QM E+D++ W++MISG+ +  +   
Sbjct: 202 FVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLR 261

Query: 334 ALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
           AL +F++M +   + PD+ T+ SV+SACA+L  L   ++IH +I    F     V NA+I
Sbjct: 262 ALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALI 321

Query: 393 DMYAKCGSLESAREVFER---------------------------------MRRRNVISW 419
            MY++CG +E+AR + E+                                 ++ R+V++W
Sbjct: 322 SMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAW 381

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           T+MI  +  HG    A+  F  M      PN  T   +L   S    +  G++I  S   
Sbjct: 382 TAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVK 441

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA- 538
              I         ++ ++ +A  +  A    + +    + V W S++ A   HG  E A 
Sbjct: 442 SGEIYS-VSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEAL 500

Query: 539 EFAAKQLLQ-LDPDH 552
           E     L++ L PDH
Sbjct: 501 ELFETMLMEGLRPDH 515



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 164/337 (48%), Gaps = 43/337 (12%)

Query: 216 PDEMVLSKILSACS----RAGNLSYG----EAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           P  + LS +L  C+    ++ N S G    + VH  +I + +    +L + L+ +Y+  G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
               A+ LFD++ L+       ++S YS+ G ++     FDQ+ ++D + W+ MI GY  
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKN 123

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
                +A+++  +M   G++P + T+ +V+++ A    ++  +++H +I K    G++ V
Sbjct: 124 IGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSV 183

Query: 388 NNAIIDMYAKCGSLESAREVFER-------------------------------MRRRNV 416
           +N++++MYAKCG    A+ VF+R                               M  R++
Sbjct: 184 SNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243

Query: 417 ISWTSMINAFAIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           ++W SMI+ F   G    AL  F+KM +D  + P+  T   VL AC++   +  G++I +
Sbjct: 244 VTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHS 303

Query: 476 SM-TNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
            + T  ++I         ++ ++ R   +  A  L+E
Sbjct: 304 HIVTTGFDISGIV--LNALISMYSRCGGVETARRLIE 338



 Score = 42.4 bits (98), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 95/255 (37%), Gaps = 66/255 (25%)

Query: 26  THMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVS 85
           +H KQ H   +K    +    S     L+T ++      S    A   F  I      VS
Sbjct: 430 SHGKQIHGSAVKSGEIYSVSVS---NALITMYAKAGNITS----ASRAFDLIRCERDTVS 482

Query: 86  -NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
               I A++     + AL++F  ML EGL  D  ++                        
Sbjct: 483 WTSMIIALAQHGHAEEALELFETMLMEGLRPDHITY------------------------ 518

Query: 145 KLGFGSDPFVQTGLVGMYGAC---GKILDARLMFDKMSYRD-IVP----WSVMIDGYFQN 196
                         VG++ AC   G +   R  FD M   D I+P    ++ M+D + + 
Sbjct: 519 --------------VGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRA 564

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII----DNNVALD 252
           GL  E     E+M    +EPD +    +LSAC    N+  G+   E ++    +N+ A  
Sbjct: 565 GLLQEAQEFIEKMP---IEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYS 621

Query: 253 AHLQSTLITMYANCG 267
           A     L  +Y+ CG
Sbjct: 622 A-----LANLYSACG 631


>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
          Length = 540

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/531 (46%), Positives = 347/531 (65%), Gaps = 34/531 (6%)

Query: 78  PAPPSR-----VSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIARAE 131
           P PP+      +   +I AI  +  P+ AL  F  +   GL    R + P +L+AIA A 
Sbjct: 24  PFPPAAHPDPDLDRAYISAIRAATAPRLALAAFACLRRVGLPAPGRRALPSLLRAIALAR 83

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
                   HGL  ++G   D FV T LV  Y ACG++ DAR +FD M  RD+V W VM+D
Sbjct: 84  FPGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARKVFDGMPDRDLVAWGVMLD 143

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
            Y Q   ++E L LF  MK S V PD+++++ +LS C+   NL +G+A+H +++ ++  +
Sbjct: 144 CYCQARNYEEALLLFHSMKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDALI 203

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           DA +   L+ MYA+C  M+MA+ L+++V  K++V+ST MV GY++ G+VE A  IF+ M 
Sbjct: 204 DAQVSCALMNMYASCADMEMAEKLYNRVSEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMP 263

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           EKD++ WSAMI+GYAE++ P EAL LF++MQ  G++PD++TMLS+               
Sbjct: 264 EKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVQPDEITMLSI--------------- 308

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
                        L + NA+IDM++KCGSL  A +VF  M ++NV++WTS+I A A+HGD
Sbjct: 309 -------------LPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGD 355

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
            R+AL  F  MK E I PNGVTF+G+LYAC HAGLV+EGR +F  M  +Y I P +EHYG
Sbjct: 356 GRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYG 415

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           CMVDL GRA LL +A +L+++M   PNVVIWGSL+AACR+HG++EL  FAAK++L+LDP+
Sbjct: 416 CMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLELGAFAAKKILELDPN 475

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           H GA VLLSNIYA+   W DV E+R  MK +G  K++ CS +E+N  V++F
Sbjct: 476 HGGAQVLLSNIYAEYGNWNDVKEVRGVMKVQGTWKKKGCSWMELNGSVHQF 526


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 256/732 (34%), Positives = 414/732 (56%), Gaps = 46/732 (6%)

Query: 30  QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFI 89
           Q HA+ILK   S    +  +   L+ S+S      +    A  I   IP P     +  I
Sbjct: 36  QAHARILK---SGAQNDGYISAKLIASYS----NYNCFNDADLILQSIPDPTVYSFSSLI 88

Query: 90  RAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFG 149
            A++ +     ++ VF +M + GL  D    P + K  A       G Q+H +    G  
Sbjct: 89  YALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLD 148

Query: 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
            D FVQ  L  MY  CG++ DAR +FD+MS +D+V  S ++ GY + G  +EV+ +  EM
Sbjct: 149 MDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEM 208

Query: 210 KMSNVEPDEMVLSKILSACSRAG-----------------------------------NL 234
           + S +EP+ +  + ILS  +R+G                                   NL
Sbjct: 209 EKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENL 268

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
           + G  +H ++I   +  D  + S ++ MY   G +     LFD+  +    V  A ++G 
Sbjct: 269 NMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGL 328

Query: 295 SRAGQVEDARLIF----DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           SR G V+ A  +F    +Q +E +++ W+++I+G A+N    EAL+LF EMQV G+KP++
Sbjct: 329 SRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNR 388

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           VT+ S++ AC ++  L   +  H +  +     D+ V +A+IDMYAKCG ++ ++ VF  
Sbjct: 389 VTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNM 448

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M  +N++ W S++N +++HG A+  +  F  +    + P+ ++F  +L AC   GL DEG
Sbjct: 449 MPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
            + F  M+ EY I P+ EHY CMV+L GRA  L+EA +L++ +PF P+  +WG+L+ +CR
Sbjct: 509 WKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCR 568

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
           +   ++LAE AA++L  L+P++ G  VL+SNIYA    W +V  +R  M+  G+ K   C
Sbjct: 569 LQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGC 628

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
           S I++ N+VY  L  D+SH Q DQI EK++E+  E++ +G+ P++  AL D+E++E+ ++
Sbjct: 629 SWIQVKNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQM 688

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           +  HSEKLA+ +GL+++   + ++++KNLR+C DCH  IK +S    REI IRD  RFHH
Sbjct: 689 LWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHH 748

Query: 711 YKDGVCSCKDYW 722
           +KDG+CSC D+W
Sbjct: 749 FKDGICSCGDFW 760


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/722 (36%), Positives = 404/722 (55%), Gaps = 14/722 (1%)

Query: 8   TKPLTLPTSTAISSCSSLTHMKQTHA-QILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
            KP  +  S  +S+CS L  +K   A     L H        +++ +  S +L     S 
Sbjct: 238 VKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHG-------MVENVFVSNALVNLYESC 290

Query: 67  LYY--ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
           L    A ++F  +P       N           P+  L VF +M   G+  D  +   IL
Sbjct: 291 LCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSIL 350

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            A ++ + L  G  +HG   K G   D FV T LV +Y  C  + +A+ +FD M +R++V
Sbjct: 351 PACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVV 410

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ +   Y   G   + LN+F EM ++ V+PD + +  IL ACS   +L  G+ +H F 
Sbjct: 411 TWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFA 470

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           + + +  D  + + L+++YA C C+  A+ +FD +  + +     +++ Y    + E   
Sbjct: 471 VRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGL 530

Query: 305 LIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
            +F QM    V+ D I WS +I G  +N+  +EA+++F +MQ  G KPD+ T+ S++ AC
Sbjct: 531 YMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRAC 590

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           +    L   + IH Y+ ++    DL   NA++DMYAKCG L  +R VF+ M  ++V SW 
Sbjct: 591 SLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWN 650

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +MI A  +HG+ + AL  F KM    + P+  TF  VL ACSH+ LV+EG +IF SM+ +
Sbjct: 651 TMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRD 710

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
           + + P+ EHY C+VD++ RA  L EA   ++ MP  P  + W + +A CRV+  +ELA+ 
Sbjct: 711 HLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKI 770

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
           +AK+L ++DP+     V L NI    K W +  ++RK MKERGI K   CS   + N V+
Sbjct: 771 SAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVH 830

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
            F+  D+S+ ++D+IY  L+E+ +++K AGY PD    L D++ EEK E +  HSEKLA+
Sbjct: 831 TFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKAESLCNHSEKLAV 890

Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
            +G+++    S IR+ KNLR+C DCHN IK +S V    IV+RD  RFHH+K+G CSCKD
Sbjct: 891 AFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRFHHFKNGNCSCKD 950

Query: 721 YW 722
           +W
Sbjct: 951 FW 952



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 133/499 (26%), Positives = 234/499 (46%), Gaps = 68/499 (13%)

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           P+  L VF +M+ +G+  D  +   IL A +  + L  G  +HG   K G   + FV   
Sbjct: 223 PQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNA 282

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           LV +Y +C  + +A+ +FD M +R+++ W+ +   Y   G   + LN+F EM ++ V+PD
Sbjct: 283 LVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPD 342

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
            M +S IL ACS+  +L  G+ +H F + + +  D  + + L+ +YANC C+  A+ +FD
Sbjct: 343 PMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFD 402

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
            +  +N+V                                W+++ S Y     PQ+ L +
Sbjct: 403 LMPHRNVVT-------------------------------WNSLSSCYVNCGFPQKGLNV 431

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F EM + G+KPD VTMLS++ AC+ L  L   + IH +  ++    D+ V NA++ +YAK
Sbjct: 432 FREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAK 491

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           C  +  A+ VF+ +  R V SW  ++ A+  + +    L  F++M  + +  + +T+  V
Sbjct: 492 CVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVV 551

Query: 458 LYACSHAGLVDEGREIFASM---------TNEYNIPPK-----------------YEHY- 490
           +  C     ++E  EIF  M         T  Y+I                    + H+ 
Sbjct: 552 IGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWK 611

Query: 491 -------GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFA 541
                    +VD++ +   L  +  + + MP   +V  W +++ A  +HG  +  L+ F 
Sbjct: 612 DWDLARTNALVDMYAKCGGLSLSRNVFDMMPI-KDVFSWNTMIFANGMHGNGKEALSLFE 670

Query: 542 AKQLLQLDPDHDGALVLLS 560
              L  + PD      +LS
Sbjct: 671 KMLLSMVKPDSATFTCVLS 689



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/519 (25%), Positives = 241/519 (46%), Gaps = 47/519 (9%)

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           P+  L VF KM    +  +  +   IL   +  + L  G ++HG   + G   D FV + 
Sbjct: 122 PQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSA 181

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
            V  Y  C  + +A+ +FD M +RD+V W+ +   Y   G   + LN+F EM +  V+PD
Sbjct: 182 FVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPD 241

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
            + +S ILSACS   +L  G+A+H F + + +  +  + + L+ +Y +C C+  A+ +FD
Sbjct: 242 PVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFD 301

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                                           M  +++I W+++ S Y     PQ+ L +
Sbjct: 302 -------------------------------LMPHRNVITWNSLASCYVNCGFPQKGLNV 330

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F EM + G+KPD + M S++ AC+ L  L   + IH +  K+    D+ V  A++++YA 
Sbjct: 331 FREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYAN 390

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           C  +  A+ VF+ M  RNV++W S+ + +   G  +  L  F +M    + P+ VT + +
Sbjct: 391 CLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSI 450

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L+ACS    +  G+ I         +   +     ++ L+ +   +REA  + + +P   
Sbjct: 451 LHACSDLQDLKSGKVIHGFAVRHGMVEDVFV-CNALLSLYAKCVCVREAQVVFDLIPHR- 508

Query: 518 NVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575
            V  W  ++ A   + E E  L  F+     ++  D     V++     K+ R ++  E+
Sbjct: 509 EVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGC-VKNSRIEEAMEI 567

Query: 576 RKSMKERGILKE--------RACSRIE---MNNEVYEFL 603
            + M+  G   +        RACS  E   M  E++ ++
Sbjct: 568 FRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYV 606



 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 212/435 (48%), Gaps = 34/435 (7%)

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           P  A+K++      G+  D+  F  + KA A +   L+  Q H   T+ G  SD  +   
Sbjct: 21  PNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNA 80

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
            +  YG C  +  AR +FD +  RD+V W+ +   Y   G   + LN+F +M ++ V+ +
Sbjct: 81  FIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKAN 140

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
            + +S IL  CS   +L  G+ +H F++ +                              
Sbjct: 141 PLTVSSILPGCSDLQDLKSGKEIHGFVVRHG----------------------------- 171

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
             +++++ VS+A V+ Y++   V +A+ +FD M  +D++ W+++ S Y     PQ+ L +
Sbjct: 172 --MVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNV 229

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F EM + G+KPD VT+  ++SAC+ L  L   + IH +  K+    ++ V+NA++++Y  
Sbjct: 230 FREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYES 289

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           C  +  A+ VF+ M  RNVI+W S+ + +   G  +  L  F +M    + P+ +    +
Sbjct: 290 CLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSI 349

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L ACS    +  G+ I         +   +     +V+L+     +REA  + + MP   
Sbjct: 350 LPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTA-LVNLYANCLCVREAQTVFDLMPHR- 407

Query: 518 NVVIWGSLMAACRVH 532
           NVV W SL ++C V+
Sbjct: 408 NVVTWNSL-SSCYVN 421



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 157/337 (46%), Gaps = 34/337 (10%)

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           +GL +E + ++   +   ++PD+ V   +  AC+ + +    +  H+      V  D  +
Sbjct: 18  HGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSI 77

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            +  I  Y  C C                               VE AR +FD +V +D+
Sbjct: 78  GNAFIHAYGKCKC-------------------------------VEGARRVFDDLVARDV 106

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + W+++ + Y     PQ+ L +F +M +  +K + +T+ S++  C+ L  L   + IH +
Sbjct: 107 VTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGF 166

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
           + ++    D+ V++A ++ YAKC  +  A+ VF+ M  R+V++W S+ + +   G  +  
Sbjct: 167 VVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKG 226

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
           L  F +M  + + P+ VT   +L ACS    +  G+ I      ++ +         +V+
Sbjct: 227 LNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHG-FALKHGMVENVFVSNALVN 285

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
           L+     +REA  + + MP   NV+ W SL A+C V+
Sbjct: 286 LYESCLCVREAQAVFDLMPHR-NVITWNSL-ASCYVN 320


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 234/577 (40%), Positives = 357/577 (61%), Gaps = 9/577 (1%)

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
           + F  DP   T L+           A  +F ++   ++  ++ MI G+  +   D+  + 
Sbjct: 56  IAFCVDPSSGTSLIDY---------ASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHF 106

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           + + +   + PD +    ++ +C++   +S G   H  II +    D ++Q++L+ MYA 
Sbjct: 107 YVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYAT 166

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
            G  + A  +F ++   ++V  T+M+ G+++ G VE AR +FDQM EK+L+ WS MISGY
Sbjct: 167 FGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGY 226

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385
           A+NNH  +A++LF  +Q  G++ ++  M+SVIS+CAHLG L+  +R H Y+ KN    +L
Sbjct: 227 AQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNL 286

Query: 386 RVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDE 445
            +  A++DMYA+CGS++ A  VFE +  R+ +SWT++I   A+HG +  +L +F  M + 
Sbjct: 287 ILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEA 346

Query: 446 SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505
            + P  +TF  VL ACSH GLV+ G +IF SM  ++ + P+ EHYGCMVDL GRA  L E
Sbjct: 347 GLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEE 406

Query: 506 ALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565
           A   V  MP  PN  +WG+L+ ACR+H   E+ E   K L+QL P H G  VLLSNIYA 
Sbjct: 407 AERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYAN 466

Query: 566 DKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISE 625
            K W+ V E+R+ MK +G+ K    S IE++  V++F   D SH + D+I     E++  
Sbjct: 467 AKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMR 526

Query: 626 LKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDC 685
           ++ AGY  +   AL D+++EEK   +  HSEKLA+ +G++ S+  + IRIVKNLRVCEDC
Sbjct: 527 IRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDC 586

Query: 686 HNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           H   KL+SKV+ RE+++RDR RFHH++ G+CSC DYW
Sbjct: 587 HTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/464 (27%), Positives = 212/464 (45%), Gaps = 79/464 (17%)

Query: 8   TKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL-PTTTPSS 66
           T  L  P   ++ +CS LTH+K  HA +++     H    +     L +F + P++  S 
Sbjct: 13  TLRLKNPKLFSLETCSDLTHLKIIHAYMIRT----HIICDVFAASRLIAFCVDPSSGTSL 68

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           + YA  IFSQI  P   + N  IR  S S  P  A   +++   +GL  D  +FP ++K+
Sbjct: 69  IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 128

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP- 185
             +   +  G Q HG   K GF  D +VQ  LV MY   G    A L+F +M Y D+V  
Sbjct: 129 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSW 188

Query: 186 ------------------------------WSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
                                         WS MI GY QN  FD+ + LF+ ++   V 
Sbjct: 189 TSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
            +E V+  ++S+C+  G L  GE  H++++ N + L+  L + L+ MYA CG +D A  +
Sbjct: 249 ANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWV 308

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           F+ +  ++ +  TA+++G +                          + GY+E      +L
Sbjct: 309 FEDLPERDTLSWTALIAGLA--------------------------MHGYSE-----RSL 337

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN------N 389
           K F  M   G+ P  +T  +V+SAC+H G++++  +I   + +     D RV        
Sbjct: 338 KYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKR-----DHRVEPRLEHYG 392

Query: 390 AIIDMYAKCGSLESA-REVFERMRRRNVISWTSMINAFAIHGDA 432
            ++D+  + G LE A R V +   + N   W +++ A  IH +A
Sbjct: 393 CMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNA 436



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 155/359 (43%), Gaps = 65/359 (18%)

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L  CS   +L++ + +H ++I  ++  D    S LI       C+D + G          
Sbjct: 24  LETCS---DLTHLKIIHAYMIRTHIICDVFAASRLIAF-----CVDPSSG---------- 65

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
              T+++   SR         IF Q+   +L  ++AMI G++ + +P +A   + + Q  
Sbjct: 66  ---TSLIDYASR---------IFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQ 113

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
           G+ PD +T   ++ +C  L  +    + H +I K+ F  D+ V N+++ MYA  G  E+A
Sbjct: 114 GLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAA 173

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM---------------------- 442
             +F+RM   +V+SWTSMI  F   GD  +A   F++M                      
Sbjct: 174 TLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFD 233

Query: 443 ---------KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
                    + + +  N    + V+ +C+H G ++ G      +     +         +
Sbjct: 234 KAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKN-GMTLNLILGTAL 292

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG--EIELAEFAAKQLLQLDP 550
           VD++ R   + +A+ + E +P   + + W +L+A   +HG  E  L  FA      L P
Sbjct: 293 VDMYARCGSIDKAVWVFEDLP-ERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTP 350


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/577 (41%), Positives = 370/577 (64%), Gaps = 5/577 (0%)

Query: 151 DP-FVQTGLVGMYGACGKILDARLMFDK-MSYRDIVPWSVMIDGYFQNGLFDEVLNLFE- 207
           DP  +    +G+  + G +  + L+F+  +S+ +I  ++ ++  + Q+  +   ++ F  
Sbjct: 56  DPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNN 115

Query: 208 EMKMSNV-EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
           ++ + N   PDE   + +L AC+    +  G+ VH F+       +  ++++L+ +Y   
Sbjct: 116 QLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKV 175

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
           GC  +A+ LFD+++++++V    ++SGY  +G V+ AR++FD M+EK+L+ WS MISGYA
Sbjct: 176 GCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYA 235

Query: 327 ENNHPQEALKLFNEMQ-VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385
            N    +A++LF +MQ   G+ P+ VT++SV+SACAHLG LD  + IH +I +N     L
Sbjct: 236 RNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGL 295

Query: 386 RVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDE 445
            + NA+ DMYAKCG +  A+ VF  M  R+VISW+ +I   A++G A  A  FF +M ++
Sbjct: 296 FLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIED 355

Query: 446 SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505
            ++PN ++F+G+L AC+HAGLVD+G E F  M   Y I PK EHYGC+VDL  RA  L +
Sbjct: 356 GLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQ 415

Query: 506 ALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565
           A  L+ +MP  PNV++WG+L+  CR++ + E  E    ++L+LD +H G+LV L+N+YA 
Sbjct: 416 AESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYAS 475

Query: 566 DKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISE 625
             R  D    R  M++   +K   CS IE+NN VYEF   D SH Q+ +IY  + E+  +
Sbjct: 476 MGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWK 535

Query: 626 LKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDC 685
           +K AGY P     + ++++EEK + +  HSEKLAL +GLI++ + + IRIVKNLRVC DC
Sbjct: 536 MKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDC 595

Query: 686 HNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           H+ IK++SK+  REIV+RDR+RFHH+KDG CSC DYW
Sbjct: 596 HDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCNDYW 632



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/484 (25%), Positives = 216/484 (44%), Gaps = 85/484 (17%)

Query: 22  CSSLTHMKQ---THAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           C++   M+Q     AQI+         N + +K +  S     ++  +L +++ IF+   
Sbjct: 31  CATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVS-----SSHGNLRHSVLIFNHFL 85

Query: 79  APPSRVS-NKFIRAISWSHRPKHALKVFLK---MLNEGLTIDRFSFPPILKAIARAEGLL 134
           + P+  + N  ++A S  H   H    +     +L      D ++F  +LKA A    +L
Sbjct: 86  SFPNIFAYNALLKAFS-QHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVL 144

Query: 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
           EG +VH   TK G  S+ FV+  LV +Y   G    A+ +FD+M  RD+V W+ +I GY 
Sbjct: 145 EGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYC 204

Query: 195 QNGLFDEVLNLFEEMKMSN--------------------------------VEPDEMVLS 222
            +G+ D+   +F+ M   N                                + P+++ L 
Sbjct: 205 FSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLV 264

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            +LSAC+  G L  G+ +H FI  N + +   L + L  MYA CGC+  AKG        
Sbjct: 265 SVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKG-------- 316

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
                                  +F +M E+D+I WS +I G A   +  EA   F EM 
Sbjct: 317 -----------------------VFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMI 353

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID--KNAFGGDLRVNN--AIIDMYAKC 398
             G++P+ ++ + +++AC H G++D+      Y D     +G   ++ +   ++D+ ++ 
Sbjct: 354 EDGLEPNDISFMGLLTACTHAGLVDKGLE---YFDMMPQVYGITPKIEHYGCVVDLLSRA 410

Query: 399 GSLESAREVFERM-RRRNVISWTSMINAFAIHGDA-RNALIFFNKMKDESIDPNGVTFIG 456
           G L+ A  +   M  + NVI W +++    I+ DA R   + +  ++ +S     + ++ 
Sbjct: 411 GRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLA 470

Query: 457 VLYA 460
            +YA
Sbjct: 471 NVYA 474


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 250/658 (37%), Positives = 378/658 (57%), Gaps = 42/658 (6%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P       N  +   + +   + A++V L+M   G   D  +   +L A+A 
Sbjct: 196 AYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVAD 255

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            + L  G  +HG   + GF     V T ++  Y  CG +  ARL+F  MS R++V W+ M
Sbjct: 256 LKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTM 315

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           IDGY QNG  +E    F +M    VEP  + +   L AC+  G+L  G  VH  + +  +
Sbjct: 316 IDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKI 375

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             D  + ++LI+MY+ C                                +V+ A  +F  
Sbjct: 376 GFDVSVMNSLISMYSKCK-------------------------------RVDIAASVFGN 404

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           +  K ++ W+AMI GYA+N    EAL LF EMQ   +KPD  T++SVI+A A L V  QA
Sbjct: 405 LKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQA 464

Query: 370 QRIH-----LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
           + IH       +DKN F     V  A+ID +AKCG++++AR++F+ M+ R+VI+W +MI+
Sbjct: 465 KWIHGLAIRTLMDKNVF-----VCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMID 519

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
            +  +G  R AL  FN+M++ S+ PN +TF+ V+ ACSH+GLV+EG   F SM   Y + 
Sbjct: 520 GYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLE 579

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P  +HYG MVDL GRA  L +A + ++ MP  P + + G+++ ACR+H  +EL E  A +
Sbjct: 580 PTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADE 639

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           L  LDPD  G  VLL+N+YA    W  V  +R +M+++GI K   CS +E+ NEV+ F +
Sbjct: 640 LFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYS 699

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
              +H Q+ +IY  L  +  E+K AGYVPD +S + D+E++ K +++  HSE+LA+ +GL
Sbjct: 700 GSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNS-IHDVEEDVKEQLLSSHSERLAIAFGL 758

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           ++++  + I I KNLRVC DCH   K +S V  REI++RD  RFHH+K+G+CSC DYW
Sbjct: 759 LNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 150/613 (24%), Positives = 276/613 (45%), Gaps = 87/613 (14%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P+     P++  +  C+SL   K+ H QIL L   +   N  L +  L S        +S
Sbjct: 39  PSHVYRHPSAILLELCTSL---KELH-QILPLIIKNGFYNEHLFQTKLISLFCKF---NS 91

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           +  A  +F  +      + +  ++  + +   + A++ + +M  + +    + F  +L+ 
Sbjct: 92  ITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQL 151

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
                 L  G ++HG+    GF S+ F  T +V +Y  C +I DA  MF++M  RD+V W
Sbjct: 152 SGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSW 211

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + ++ GY QNG     + +  +M+ +  +PD + L  +L A +    L  G ++H +   
Sbjct: 212 NTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFR 271

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
                  ++ + ++  Y  CG +  A+ +F  +  +N+V    M+ GY++ G+ E+A   
Sbjct: 272 AGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFAT 331

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F                           LK+ +E    G++P  V+M+  + ACA+LG L
Sbjct: 332 F---------------------------LKMLDE----GVEPTNVSMMGALHACANLGDL 360

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           ++ + +H  +D+   G D+ V N++I MY+KC  ++ A  VF  ++ + V++W +MI  +
Sbjct: 361 ERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGY 420

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVL---------------------------- 458
           A +G    AL  F +M+   I P+  T + V+                            
Sbjct: 421 AQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNV 480

Query: 459 YAC-----SHA--GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
           + C     +HA  G +   R++F  M   + I      +  M+D +G     REAL+L  
Sbjct: 481 FVCTALIDTHAKCGAIQTARKLFDLMQERHVIT-----WNAMIDGYGTNGHGREALDLFN 535

Query: 512 TM---PFAPNVVIWGSLMAACRVHGEIELAEF---AAKQLLQLDP--DHDGALV-LLSNI 562
            M      PN + + S++AAC   G +E   +   + K+   L+P  DH GA+V LL   
Sbjct: 536 EMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRA 595

Query: 563 YAKDKRWQDVGEL 575
              D  W+ + ++
Sbjct: 596 GRLDDAWKFIQDM 608


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/622 (39%), Positives = 368/622 (59%), Gaps = 31/622 (4%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A+ +F  M+  G+  D  +   +L  +A  + L  GM +  L  K+GF S  +V TGL  
Sbjct: 191 AILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLAC 250

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           +Y  CG+I  ARL+F ++   D+V ++ MI GY  N   +  + LF+E+ +S  + +   
Sbjct: 251 LYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSS 310

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           +  ++      G+L     +H F   + V  ++ + + L T+Y                 
Sbjct: 311 IVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVY----------------- 353

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                         SR  ++E ARL+FD+  EK L  W+AMISGYA+N   ++A+ LF E
Sbjct: 354 --------------SRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQE 399

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQ C ++P+ VT+ S++SACA LG L   + +H  I++ +F  ++ V+ A+IDMYAKCGS
Sbjct: 400 MQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGS 459

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +  A+ +F  M  +N ++W +MI+ + +HG    AL  FN+M    + P GVTF+ VLYA
Sbjct: 460 ITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYA 519

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSHAGLV EG EIF SM +++   P  EHY CMVDL GRA  L +AL+ +  MP  P   
Sbjct: 520 CSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPP 579

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           +WG+L+ AC +H +  LA  A+ +L +LDP + G  VLLSNIY+  + + +   +R  +K
Sbjct: 580 VWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVK 639

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
            R + K   C+ IE+ N ++ F + D+SH Q   IY  L ++  +++ AG+  +  +AL 
Sbjct: 640 RRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALH 699

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D+E+EEK  ++  HSEKLA+ +GLI+S+  + IRI+KNLRVC DCHN  K +SK+  R I
Sbjct: 700 DVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVI 759

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           V+RD  RFHH+KDG+CSC DYW
Sbjct: 760 VVRDANRFHHFKDGICSCGDYW 781



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 140/518 (27%), Positives = 243/518 (46%), Gaps = 44/518 (8%)

Query: 17  TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
           T I+  S+L  + QTHAQI+   +  H+    + KL      L     +SL     +FS 
Sbjct: 15  TLINRVSTLHQLNQTHAQIIL--NGLHNDLVTVTKLTHKLSHLKAIDQASL-----LFST 67

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLE 135
           IP P   + N  IRA S ++ P  A+ ++  +     L  D F++  +   I+ A  L  
Sbjct: 68  IPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFV---ISGASSLGL 124

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G+ +H      GFGSD FV + +V  Y    ++  AR +FD M  RD V W+ M+ G  +
Sbjct: 125 GLLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVK 184

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           N  FDE + +F +M    +  D   ++ +L   +   +L+ G  +               
Sbjct: 185 NSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQ-------------- 230

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
                       C+ M  G           V T +   YS+ G++E ARL+F Q+ + DL
Sbjct: 231 ------------CLAMKVGFHSHAY-----VITGLACLYSKCGEIETARLLFGQIGQPDL 273

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + ++AMISGY  NN  + +++LF E+ V G K +  +++ +I      G L   + IH +
Sbjct: 274 VSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGF 333

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
             K+    +  V+ A+  +Y++   +ESAR +F+    +++ SW +MI+ +A +G    A
Sbjct: 334 CTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKA 393

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
           +  F +M+   + PN VT   +L AC+  G +  G+ +   + N  +          ++D
Sbjct: 394 ISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVH-DLINRESFESNIFVSTALID 452

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           ++ +   + EA  L   MP   N V W ++++   +HG
Sbjct: 453 MYAKCGSITEAQRLFSMMP-EKNAVTWNAMISGYGLHG 489



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 187/395 (47%), Gaps = 35/395 (8%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F QI  P     N  I   + ++  + ++++F ++L  G  ++  S   ++        
Sbjct: 264 LFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGH 323

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L     +HG  TK G  S+  V T L  +Y    +I  ARL+FD+ S + +  W+ MI G
Sbjct: 324 LHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISG 383

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y QNGL ++ ++LF+EM+   V P+ + ++ ILSAC++ G LS G+ VH+ I   +   +
Sbjct: 384 YAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESN 443

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             + + LI MYA CG +  A+ LF  +  KN V   AM+SGY                  
Sbjct: 444 IFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYG----------------- 486

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
                    + GY       EAL LFNEM    + P  VT LSV+ AC+H G++ +   I
Sbjct: 487 ---------LHGYG-----HEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEI 532

Query: 373 -HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHG 430
               +  + F         ++D+  + G+L+ A +   +M        W +++ A  IH 
Sbjct: 533 FRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHK 592

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
           DA  A +  +K+ +  +DP  V +  +L     AG
Sbjct: 593 DANLARLASDKLFE--LDPQNVGYYVLLSNIYSAG 625



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 152/352 (43%), Gaps = 38/352 (10%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           ML  G+   R  F   L  I R   L +  Q H      G  +D    T L         
Sbjct: 1   MLYRGIASTRNLF---LTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKA 57

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILS 226
           I  A L+F  +   D+  ++V+I  +  N      ++L+  ++ S  +EPD         
Sbjct: 58  IDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPD--------- 108

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV 286
                 N +Y      F+I    +L   L     ++ A  G               +L V
Sbjct: 109 ------NFTYA-----FVISGASSLGLGLLLHAHSIVAGFG--------------SDLFV 143

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346
            +A+V+ Y +  +V  AR +FD M+E+D + W+ M+SG  +N+   EA+ +F +M   G+
Sbjct: 144 GSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGI 203

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE 406
             D  T+ +V+   A L  L     I     K  F     V   +  +Y+KCG +E+AR 
Sbjct: 204 GFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARL 263

Query: 407 VFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           +F ++ + +++S+ +MI+ +  + +  +++  F ++       N  + +G++
Sbjct: 264 LFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/732 (34%), Positives = 408/732 (55%), Gaps = 46/732 (6%)

Query: 30  QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFI 89
           Q HA+ILK   S    +  +   L+ S+S      +    A  +   IP P     +  I
Sbjct: 36  QAHARILK---SGAQNDGYISAKLIASYS----NYNCFNDADLVLQSIPDPTIYSFSSLI 88

Query: 90  RAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFG 149
            A++ +     ++ VF +M + GL  D    P + K  A       G Q+H +    G  
Sbjct: 89  YALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLD 148

Query: 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
            D FVQ  +  MY  CG++ DAR +FD+MS +D+V  S ++  Y + G  +EV+ +  EM
Sbjct: 149 MDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEM 208

Query: 210 KMSNVE-----------------------------------PDEMVLSKILSACSRAGNL 234
           + S +E                                   PD++ +S +L +   +  L
Sbjct: 209 ESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEML 268

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
           + G  +H ++I   +  D  + S +I MY   G +     LF++  +    V  A ++G 
Sbjct: 269 NMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGL 328

Query: 295 SRAGQVEDARLIFD----QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           SR G V+ A  +F+    Q +E +++ W+++I+G A+N    EAL+LF EMQV G+KP+ 
Sbjct: 329 SRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNH 388

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           VT+ S++ AC ++  L   +  H +  +     ++ V +A+IDMYAKCG +  ++ VF  
Sbjct: 389 VTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNM 448

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M  +N++ W S++N F++HG A+  +  F  +    + P+ ++F  +L AC   GL DEG
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
            + F  M+ EY I P+ EHY CMV+L GRA  L+EA +L++ MPF P+  +WG+L+ +CR
Sbjct: 509 WKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCR 568

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
           +   ++LAE AA++L  L+P++ G  VLLSNIYA    W +V  +R  M+  G+ K   C
Sbjct: 569 LQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGC 628

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
           S I++ N VY  L  D+SH Q DQI EK++E+  E++ +G+ P++  AL D+E++E+ ++
Sbjct: 629 SWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQM 688

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           +  HSEKLA+ +GL+++   + ++++KNLR+C DCH  IK +S    REI IRD  RFHH
Sbjct: 689 LWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHH 748

Query: 711 YKDGVCSCKDYW 722
           +KDG+CSC D+W
Sbjct: 749 FKDGICSCGDFW 760


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/718 (34%), Positives = 430/718 (59%), Gaps = 22/718 (3%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
           S A++S ++ T + + H+ I+ L   H    S  L      F  PT++        S+F 
Sbjct: 20  SRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSS-------FSVF- 71

Query: 76  QIPAPPSRVS--NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           ++ +P + V   N  IRA++ +     AL ++ +     L  D ++FP ++ A A   GL
Sbjct: 72  RLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA---GL 128

Query: 134 LE---GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
           L+      +H     +GFGSD ++   L+ MY     +  AR +F++M  RD+V W+ +I
Sbjct: 129 LDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLI 188

Query: 191 DGYFQNGLFDEVLNLFEE-----MKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            GY  NG ++E L ++ +     M+M N  +PD + ++ IL AC   G+L +G+ VH+++
Sbjct: 189 SGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYM 248

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           I +    D    + LI MYA CG +  ++ +F  +  K+ V   +M++ Y + G++ D+ 
Sbjct: 249 ITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSL 308

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            +F+ M  +D+I W+ +I+    +      L++ + M+  G+ PD  TMLS++  C+ L 
Sbjct: 309 KVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLA 368

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
              Q + IH  I K     D+ V N +I+MY+KCGSL ++ +VF+ M+ ++V++WT++I+
Sbjct: 369 AKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALIS 428

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
           A  ++G+ + A+  F +M+   I P+ V F+ +++ACSH+GLV+EG   F  M  +Y I 
Sbjct: 429 ACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIE 488

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P+ EHY C+VDL  R+ LL +A + + +MP  P+  IWG+L++ACR+ G+ E+AE  +++
Sbjct: 489 PRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSER 548

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           +++L+PD  G  VL+SNIYA   +W  V  +RKS+K RG+ K+  CS +E+ N+VY F T
Sbjct: 549 IIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGT 608

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
             +  +Q +++ + L  +   +   GY+ ++   L D++++EKR+++  HSE+LA+ +GL
Sbjct: 609 GTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGL 668

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +++K  + ++++KNLRVCEDCH   K +SK+  RE+++RD  RFH +KDG CSC DYW
Sbjct: 669 LNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/543 (43%), Positives = 345/543 (63%), Gaps = 33/543 (6%)

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAV 240
           ++  W+ +I GY + G     ++L+ EM+ S  VEPD      +L A  +  ++  GE +
Sbjct: 84  NVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETI 143

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H  +I +      ++Q++L+ +YANCG                                V
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCG-------------------------------DV 172

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
             A  +FD+M EKDL+ W+++I+G+AEN  P+EAL L+ EM + G+KPD  T++S++SAC
Sbjct: 173 ASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSAC 232

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           A +G L   +R H+Y+ K     +L  +N ++D+YA+CG +E A+ +F+ M  +N +SWT
Sbjct: 233 AKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292

Query: 421 SMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           S+I   A++G  + A+  F  M+  E + P  +TF+G+LYACSH G+V EG E F  M+ 
Sbjct: 293 SLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSE 352

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
           EY I P+ EH+GCMVDL  RA  +++A E +  MP  PNVVIW +L+ AC VHG+ +LAE
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAE 412

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
            A  ++LQL+P+H G  VLLSN+YA ++RW DV ++RK M   G+ K    S +E+ N V
Sbjct: 413 LARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRV 472

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
           +EFL  D+SH Q D IY KL E+   L+  GYVP I +  VD+E+EEK   +++HSEK+A
Sbjct: 473 HEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIA 532

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           + + LIS+ +   IR+VKNL+VC DCH  IKLVSKVY REIV+RDR+RFHH+K+G CSC+
Sbjct: 533 IAFMLISTPERWPIRVVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQ 592

Query: 720 DYW 722
           DYW
Sbjct: 593 DYW 595



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/434 (28%), Positives = 221/434 (50%), Gaps = 43/434 (9%)

Query: 23  SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPS 82
           SSLT ++Q HA  ++   S  S   L   L+    SLP+  P S  YA  +FS+I  P +
Sbjct: 28  SSLTKLRQIHAFSIRNGVSI-SDAELGKHLIFYLVSLPSPPPMS--YAHKVFSKIEKPIN 84

Query: 83  R-VSNKFIRAISWSHRPKHALKVFLKMLNEGLT-IDRFSFPPILKAIARAEGLLEGMQVH 140
             + N  IR  +       A+ ++ +M   G    D  ++P +LKA+ +   +  G  +H
Sbjct: 85  VFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIH 144

Query: 141 GLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
            +  + GFGS  +VQ  L+ +Y  CG +  A  +FDKM  +D+V W+ +I+G+ +NG  +
Sbjct: 145 SVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPE 204

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
           E L L+ EM +  ++PD   +  +LSAC++ G L+ G+  H ++I   +  + H  + L+
Sbjct: 205 EALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLL 264

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
            +YA CG ++ AK LFD+++ KN V  T++                              
Sbjct: 265 DLYARCGRVEEAKTLFDEMVDKNSVSWTSL------------------------------ 294

Query: 321 MISGYAENNHPQEALKLFNEMQVC-GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379
            I G A N   +EA++LF  M+   G+ P ++T + ++ AC+H G++ +       + + 
Sbjct: 295 -IVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEE 353

Query: 380 AFGGDLRVNN--AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNAL 436
            +  + R+ +   ++D+ A+ G ++ A E   +M  + NV+ W +++ A  +HGD+   L
Sbjct: 354 -YKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSD--L 410

Query: 437 IFFNKMKDESIDPN 450
               +MK   ++PN
Sbjct: 411 AELARMKILQLEPN 424


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 250/654 (38%), Positives = 379/654 (57%), Gaps = 35/654 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT-IDRFSFPPILKAIA 128
           A  +F ++P   + + N  I     +     +++VF  ++NE  T +D  +   IL A+A
Sbjct: 173 ARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVA 232

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
             + L  GMQ+H L TK G  S  +V TG + +Y  CGKI     +F +    DIV ++ 
Sbjct: 233 ELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNA 292

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI GY  NG  +  L+LF+E+ +S      +  S ++S    +G+L    A+H + + +N
Sbjct: 293 MIHGYTSNGETELSLSLFKELMLSGAR---LRSSTLVSLVPVSGHLMLIYAIHGYCLKSN 349

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
                                           L +  VSTA+ + YS+  ++E AR +FD
Sbjct: 350 -------------------------------FLSHASVSTALTTVYSKLNEIESARKLFD 378

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           +  EK L  W+AMISGY +N   ++A+ LF EMQ     P+ VT+  ++SACA LG L  
Sbjct: 379 ESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSL 438

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            + +H  +    F   + V+ A+I MYAKCGS+  AR +F+ M ++N ++W +MI+ + +
Sbjct: 439 GKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGL 498

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG  + AL  F +M +  I P  VTF+ VLYACSHAGLV EG EIF SM + Y   P  +
Sbjct: 499 HGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVK 558

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HY CMVD+ GRA  L+ AL+ +E M   P   +W +L+ ACR+H +  LA   +++L +L
Sbjct: 559 HYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFEL 618

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           DPD+ G  VLLSNI++ D+ +     +R++ K+R + K    + IE+    + F + D+S
Sbjct: 619 DPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQS 678

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
           H Q  +IYEKL ++  +++ AGY P+   AL D+E+EE+  ++  HSE+LA+ +GLI+++
Sbjct: 679 HPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATE 738

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             + IRI+KNLRVC DCH   KL+SK+  R IV+RD  RFHH+KDGVCSC DYW
Sbjct: 739 PGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/446 (23%), Positives = 192/446 (43%), Gaps = 85/446 (19%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           Q H      GF +D  + T L       G I  AR +F  +   D+  ++V++ G+  N 
Sbjct: 38  QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 198 LFDEVLNLFEEMKMS-NVEPDEMVLSKILSACS-----RAGNLSYGEAVHEFIIDNNVAL 251
                L++F  ++ S +++P+    +  +SA S     RAG + +G+AV    +D     
Sbjct: 98  SPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAV----VD----- 148

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
                          GC               L++ + +V  Y +  +VEDAR +FD+M 
Sbjct: 149 ---------------GCDS------------ELLLGSNIVKMYFKFWRVEDARKVFDRMP 181

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEM--QVCGMKPDKVTMLSVISACAHLGVLDQA 369
           EKD I W+ MISGY +N    E++++F ++  + C  + D  T+L ++ A A L  L   
Sbjct: 182 EKDTILWNTMISGYRKNEMYVESIQVFRDLINESC-TRLDTTTLLDILPAVAELQELRLG 240

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
            +IH    K        V    I +Y+KCG ++    +F   R+ +++++ +MI+ +  +
Sbjct: 241 MQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSN 300

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIG---------VLYAC----------SHAGL---- 466
           G+   +L  F ++          T +          ++YA           SHA +    
Sbjct: 301 GETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTAL 360

Query: 467 ---------VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM---P 514
                    ++  R++F   + E ++P     +  M+  + +  L  +A+ L   M    
Sbjct: 361 TTVYSKLNEIESARKLFDE-SPEKSLPS----WNAMISGYTQNGLTEDAISLFREMQKSE 415

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEF 540
           F+PN V    +++AC   G + L ++
Sbjct: 416 FSPNPVTITCILSACAQLGALSLGKW 441


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 250/654 (38%), Positives = 382/654 (58%), Gaps = 35/654 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT-IDRFSFPPILKAIA 128
           A  +F ++P   + + N  I     +     +++VF  ++NE  T +D  +   IL A+A
Sbjct: 173 ARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVA 232

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
             + L  GMQ+H L TK G  S  +V TG + +Y  CGKI  A  +F +    DIV ++ 
Sbjct: 233 ELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNA 292

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI GY  NG  +  L+LF+E+ +S  +   +  S ++S    +G+L    A+H + + +N
Sbjct: 293 MIHGYTSNGETELSLSLFKELMLSGAK---LKSSTLVSLVPVSGHLMLIYAIHGYSLKSN 349

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
                                           L +  VSTA+ + YS+  ++E AR +FD
Sbjct: 350 -------------------------------FLSHTSVSTALTTVYSKLNEIESARKLFD 378

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           +  EK L  W+AMISGY +N   ++A+ LF EMQ     P+ VT+  ++SACA LG L  
Sbjct: 379 ESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSL 438

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            + +H  +    F   + V+ A+I MYAKCGS+  AR +F+ M ++N ++W +MI+ + +
Sbjct: 439 GKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGL 498

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG  + AL  F++M +  I P  VTF+ VLYACSHAGLV EG EIF SM + Y   P  +
Sbjct: 499 HGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVK 558

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HY C+VD+ GRA  L+ AL+ +E MP  P   +W +L+ ACR+H +  LA   +++L +L
Sbjct: 559 HYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFEL 618

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           DPD+ G  VLLSNI++ D+ +     +R++ K+R + K    + IE+    + F + D+S
Sbjct: 619 DPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQS 678

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
           H Q   I+EKL ++  +++ AGY P+   AL D+E+EE+  ++  HSE+LA+ +GLI+++
Sbjct: 679 HPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATE 738

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             + IRI+KNLRVC DCH   KL+SK+  R IV+RD  RFHH+KDGVCSC DYW
Sbjct: 739 PGTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 186/404 (46%), Gaps = 38/404 (9%)

Query: 53  LLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG 112
           +LT F    +    +  A ++F +   P     N  I   + +   + +L +F +++  G
Sbjct: 258 VLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG 317

Query: 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR 172
               +     ++  +  +  L+    +HG   K  F S   V T L  +Y    +I  AR
Sbjct: 318 A---KLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESAR 374

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
            +FD+   + +  W+ MI GY QNGL ++ ++LF EM+ S   P+ + ++ ILSAC++ G
Sbjct: 375 KLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLG 434

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
            LS G+ VH+ +   +     ++ + LI MYA CG +  A+ LFD +  KN V    M+S
Sbjct: 435 ALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMIS 494

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
           GY   G                               H QEAL +F+EM   G+ P  VT
Sbjct: 495 GYGLHG-------------------------------HGQEALTIFSEMLNSGIAPTPVT 523

Query: 353 MLSVISACAHLGVLDQAQRI-HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
            L V+ AC+H G++ +   I +  I +  F   ++    ++D+  + G L+ A +  E M
Sbjct: 524 FLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAM 583

Query: 412 RRRNVIS-WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
             +   S W +++ A  IH D   A     K+ +  +DP+ V +
Sbjct: 584 PIQPGPSVWETLLGACRIHKDTNLARTVSEKLFE--LDPDNVGY 625



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 104/461 (22%), Positives = 192/461 (41%), Gaps = 85/461 (18%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
            L    R+  +    Q H      GF +D  + T L       G I  AR +F  +   D
Sbjct: 23  FLDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPD 82

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACS-----RAGNLSY 236
           +  ++V++ G+  N      L +F  ++ S +++P+    +  +SA S     RAG + +
Sbjct: 83  VFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIH 142

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G+A    I+D                    GC               L++ + +V  Y +
Sbjct: 143 GQA----IVD--------------------GCDS------------ELLLGSNIVKMYFK 166

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM--QVCGMKPDKVTML 354
             +VEDAR +FD+M EKD I W+ MISGY +N    E++++F ++  + C  + D  T+L
Sbjct: 167 FWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESC-TRLDTTTLL 225

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
            ++ A A L  L    +IH    K        V    I +Y+KCG ++ A  +F   RR 
Sbjct: 226 DILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRP 285

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL-------- 466
           +++++ +MI+ +  +G+   +L  F ++          T + ++    H  L        
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYS 345

Query: 467 ------------------------VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
                                   ++  R++F   + E ++P     +  M+  + +  L
Sbjct: 346 LKSNFLSHTSVSTALTTVYSKLNEIESARKLFDE-SPEKSLPS----WNAMISGYTQNGL 400

Query: 503 LREALELVETM---PFAPNVVIWGSLMAACRVHGEIELAEF 540
             +A+ L   M    F+PN V    +++AC   G + L ++
Sbjct: 401 TEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKW 441


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/610 (40%), Positives = 370/610 (60%), Gaps = 37/610 (6%)

Query: 150  SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
            S+P +   L+  Y  CG+    R +FD++  +++V ++VMI  Y  N L+ + L +F+ M
Sbjct: 1058 SNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNM 1117

Query: 210  KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
                ++PD      +L A S + +L  G  +H  ++   + L+  + + LI+MY  CGC+
Sbjct: 1118 AGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCL 1177

Query: 270  DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA-------------------------- 303
              A  + D++  +++V   ++V+G +R GQ +DA                          
Sbjct: 1178 VEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAV 1237

Query: 304  -----------RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
                       + +F ++  K L+ W+ MI+ Y  N+ P EA+ +F +M+   + PD ++
Sbjct: 1238 TNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAIS 1297

Query: 353  MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
            + SV+ AC  L  L   +RIH Y+ +     +L + NA+IDMYAKCG LE AREVF++M+
Sbjct: 1298 IASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMK 1357

Query: 413  RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
             R+V+SWTSMI+A+ ++G  R+A+  F++M+D  ++P+ + F+ VL ACSHAGL+DEGR 
Sbjct: 1358 FRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRY 1417

Query: 473  IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
             F  MT E  I P+ EH+ CMVDL GRA  + EA   ++ MP  PN  +WG+L++ACRV+
Sbjct: 1418 YFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVY 1477

Query: 533  GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
              + +   AA QL QL P+  G  VLLSNIYAK  RW+DV  +R  MK +GI K    S 
Sbjct: 1478 SNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSN 1537

Query: 593  IEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652
             E++N V+ FL  D+SH Q+ QIYE+L+ ++ ++K AGYVP+  SAL D+E+E+K   + 
Sbjct: 1538 FELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALHDVEEEDKECHLA 1597

Query: 653  WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712
             HSEKLA+ + ++++   S IRI KNLRVC DCH   KL+SK+  REI IRD  RFHH+ 
Sbjct: 1598 VHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFY 1657

Query: 713  DGVCSCKDYW 722
            +GVCSC DYW
Sbjct: 1658 NGVCSCGDYW 1667



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 230/446 (51%), Gaps = 45/446 (10%)

Query: 25   LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV 84
            + ++K+ H++I  + H  HS  SL +KL+  ++++     S+ +    IF +IP      
Sbjct: 1040 IKYLKKLHSKIC-IDHDLHSNPSLGIKLM-RAYAVCGEPWSTRH----IFDEIPKKNVVF 1093

Query: 85   SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
             N  IR+   +H    AL VF  M   G+  D +++P +LKA + +E L  GMQ+H    
Sbjct: 1094 FNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVV 1153

Query: 145  KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
            ++G   + FV  GL+ MYG CG +++A  + D+M  RD+V W+ ++ G  +NG FD+ L 
Sbjct: 1154 RVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALE 1213

Query: 205  LFEEMKMSNVEPDEMVLSKILSACSRA--GNLSY-------------------------- 236
            + +EM++  ++PD   ++ +L A +     N+S+                          
Sbjct: 1214 VCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNN 1273

Query: 237  ---GEAVHEFII--DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK----NLVVS 287
                EAV  F+   D+ V  DA   ++++    +   + + + + + V+ K    NL++ 
Sbjct: 1274 SMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLE 1333

Query: 288  TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
             A++  Y++ G +E AR +FDQM  +D++ W++MIS Y  N   ++A+ LF+ MQ  G+ 
Sbjct: 1334 NALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLN 1393

Query: 348  PDKVTMLSVISACAHLGVLDQAQ-RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE 406
            PD +  +SV+SAC+H G+LD+ +    L  ++      +     ++D+  + G ++ A  
Sbjct: 1394 PDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYG 1453

Query: 407  VFERMR-RRNVISWTSMINAFAIHGD 431
              ++M    N   W ++++A  ++ +
Sbjct: 1454 FIKQMPMEPNERVWGALLSACRVYSN 1479



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 153/329 (46%), Gaps = 29/329 (8%)

Query: 272  AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
            +K   D  L  N  +   ++  Y+  G+    R IFD++ +K+++ ++ MI  Y  N+  
Sbjct: 1048 SKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLY 1107

Query: 332  QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
             +AL +F  M   G+ PD  T   V+ A +    L    +IH  + +     ++ V N +
Sbjct: 1108 SDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGL 1167

Query: 392  IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
            I MY KCG L  A  V + M  R+V+SW S++   A +G   +AL    +M+   + P+ 
Sbjct: 1168 ISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDA 1227

Query: 452  VTFIGVLYACSHAGL--VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
             T   +L A ++  L  V   +E+F  + N+  +      +  M+ ++   ++  EA+++
Sbjct: 1228 GTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLV-----SWNVMIAVYMNNSMPAEAVDI 1282

Query: 510  ---VETMPFAPNVVIWGSLMAAC----------RVHGEIELAEFAAKQLLQLDPDHDGAL 556
               +E     P+ +   S++ AC          R+H      E+  ++ LQ +   + AL
Sbjct: 1283 FLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIH------EYVVRKRLQPNLLLENAL 1336

Query: 557  VLLSNIYAKDKRWQDVGELRKSMKERGIL 585
            +   ++YAK    +   E+   MK R ++
Sbjct: 1337 I---DMYAKCGCLEYAREVFDQMKFRDVV 1362


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/699 (37%), Positives = 382/699 (54%), Gaps = 67/699 (9%)

Query: 56  SFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRP---KHALKVFLKMLNEG 112
           S   PT +P +     S     P  PSR +  ++ A+    R    + A+  +++M   G
Sbjct: 33  SIQKPTASPLT-----SKTPPKPTSPSRSTASWVDALRSRTRSNDFREAISTYIEMTVSG 87

Query: 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPF-VQTGLVGMYGACG----- 166
              D F+FP +LKA++  + L  G Q+H    K G+GS    V   LV MYG CG     
Sbjct: 88  ARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDK 147

Query: 167 ---------------KILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
                          ++ D++ +F+    RD+V W+ MI  + Q+  F E L  F  M +
Sbjct: 148 TFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVL 207

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
             VE D + ++ +L ACS    L  G+ +H +++ NN                       
Sbjct: 208 EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNND---------------------- 245

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
                   L++N  V +A+V  Y    QVE  R +FD ++ + +  W+AMISGYA N   
Sbjct: 246 --------LIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLD 297

Query: 332 QEALKLFNEM-QVCGMKPDKVTMLSVISACAH-LGVLDQAQRIHLYIDKNAFGGDLRVNN 389
           ++AL LF EM +V G+ P+  TM SV+ AC H L  + + + IH Y  +N    D+ V +
Sbjct: 298 EKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGS 357

Query: 390 AIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES--- 446
           A++DMYAKCG L  +R VF  M  +NVI+W  +I A  +HG    AL  F  M  E+   
Sbjct: 358 ALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRG 417

Query: 447 --IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
               PN VTFI V  ACSH+GL+ EG  +F  M +++ + P  +HY C+VDL GRA  L 
Sbjct: 418 GEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLE 477

Query: 505 EALELVETMPFA-PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563
           EA ELV TMP     V  W SL+ ACR+H  +EL E AAK LL L+P+     VLLSNIY
Sbjct: 478 EAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIY 537

Query: 564 AKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVI 623
           +    W    E+RK+M++ G+ KE  CS IE  +EV++F+  D SH Q++Q++  L  + 
Sbjct: 538 SSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLS 597

Query: 624 SELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCE 683
            +++  GYVPD    L +++++EK  ++  HSEKLA+ +G++++   + IR+ KNLRVC 
Sbjct: 598 EKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCN 657

Query: 684 DCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           DCH   K +SK+  REI++RD  RFHH+K+G CSC DYW
Sbjct: 658 DCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/699 (37%), Positives = 406/699 (58%), Gaps = 44/699 (6%)

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWS----HRPKHALKVFLKMLNEGLTIDRFS 119
           P  L YAL +F ++P P + + +  +RA S +    HRP     +F +M   G+  D F+
Sbjct: 50  PLHLRYALHLFDRMP-PSTFLFDTALRACSRAGSDPHRP---FLLFRRMRRAGVRPDGFT 105

Query: 120 FPPILKAIA---RAEGLLEGMQVHGLGTKLGFGSD-PFVQTGLVGMYGACGKILDARLMF 175
           F  + K  +   R   LL    +H    +    S  PFV   L+ MY   G   DAR  F
Sbjct: 106 FHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAF 165

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLF-------------------------------DEVLN 204
           D++  +D V W+++I G  + G+                                 E + 
Sbjct: 166 DEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVG 225

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
            F+ M    + PDE+ +  +LSAC++  +L  G ++H  + +  +    +L   LI MYA
Sbjct: 226 CFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYA 285

Query: 265 NCGCMDMAKGLFDKVLLKNLVVS-TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
            CG    A+ +FD +       S  A++ GY + G V+ AR +FD+M  +D+I +++M++
Sbjct: 286 KCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMT 345

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           GY  +   +EAL LF  M+   ++ D  T++++++ACA LG L Q + +H  I++     
Sbjct: 346 GYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEA 405

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
           D+ +  A++DMY KCG ++ A  VF+RM +R+V +WT+MI   A +G  + AL  F +M+
Sbjct: 406 DIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMR 465

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
            +   PN V++I VL ACSH+ L++EGR  F  M   YNI P+ EHYGCM+DL GR+ LL
Sbjct: 466 CDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLL 525

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563
            EA++LV+TMP  PN VIW S+++ACRVH  I+LA+ AA+ LL+L+PD DG  V L NIY
Sbjct: 526 DEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIY 585

Query: 564 AKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVI 623
              ++W++  ++R  M+ER + K    S I +  +V++F+ +D+SH +  +I   L E+ 
Sbjct: 586 IDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEIS 645

Query: 624 SELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCE 683
             LK  GY P      VD+++EEK + +L HSEKLA+ +GLI+   +  + I KNLRVCE
Sbjct: 646 HRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCE 705

Query: 684 DCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           DCH+ IKL+S+++ REI++RDR+RFHH+++G CSC D+W
Sbjct: 706 DCHSAIKLISRLWNREIIVRDRSRFHHFREGTCSCNDFW 744


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 258/734 (35%), Positives = 404/734 (55%), Gaps = 71/734 (9%)

Query: 21  SCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAP 80
           S  S +  +Q HAQ+LK   +    N  LL  + +  +L       L+ +L +F+ I  P
Sbjct: 18  SIKSRSQAQQLHAQVLKF-QASSLCNLSLLLSIYSHINL-------LHDSLRLFNTIHFP 69

Query: 81  PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVH 140
           P+      IR  +    P  +L  F+ ML  GL  D   FP +LK+ A    L  G  +H
Sbjct: 70  PALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLH 129

Query: 141 GLGTKLGFGSDPFVQTGLVGMYG-------------ACGKILD----------------- 170
           G   ++G   D +    L+ MY                G++ D                 
Sbjct: 130 GYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSE 189

Query: 171 --ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228
              R +F+ M  +D+V W+ +I G  +NGL++E L +  EM  +N++PD   LS +L   
Sbjct: 190 DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLI 249

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
           +   ++S G+ +H   I   +  D ++ S+LI MYA C                      
Sbjct: 250 AENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT--------------------- 288

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
                     +V D+  +F  + E+D I W+++I+G  +N    E L+ F +M +  +KP
Sbjct: 289 ----------RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKP 338

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
              +  S++ ACAHL  L   +++H YI +N F  ++ + ++++DMYAKCG++ +A+++F
Sbjct: 339 KSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIF 398

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
           +RMR R+++SWT+MI   A+HG A +A+  F +M+ E I PN V F+ VL ACSH GLVD
Sbjct: 399 DRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVD 458

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           E  + F SMT ++ I P  EHY  + DL GRA  L EA + +  M   P   IW +L++A
Sbjct: 459 EAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSA 518

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           CRVH  I++AE  A ++L++DP++ GA +LL+NIY+  +RW++  + R SM+  GI K  
Sbjct: 519 CRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTP 578

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
           ACS IE+ N+VY F+  D SH   ++I E +  ++  ++  GYVPD      D+E+E+K+
Sbjct: 579 ACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKK 638

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
            ++  HSE+LA+ +G+I++     IR+ KNLRVC DCH   K +SK+  REIV+RD +RF
Sbjct: 639 YLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRF 698

Query: 709 HHYKDGVCSCKDYW 722
           HH+K+G CSC DYW
Sbjct: 699 HHFKNGTCSCGDYW 712


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 259/706 (36%), Positives = 389/706 (55%), Gaps = 38/706 (5%)

Query: 18  AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI 77
           + ++  S    +Q HA ++  S     +N+  L   L +F       S    A  IF  I
Sbjct: 68  SFTNTKSFKQGQQLHAHMISFSIL---ENNTYLNTKLAAFYAGCGLMSQ---AEVIFDGI 121

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
               S + N  IR  + +  P  +L ++ +ML  G   D F++P +LKA      +  G 
Sbjct: 122 VLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGR 181

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           +VH      G  SD +V   L+ MY   G +  AR++FD+M+ RD+  W+ MI GY +N 
Sbjct: 182 RVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNA 241

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA-LDAHLQ 256
                  +F+ M  + +  D   L  +LSAC+    +  G+ +H + + N++   +    
Sbjct: 242 DSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFT 301

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           ++LI MY NC CM                                DAR +F+++  KD +
Sbjct: 302 NSLIEMYCNCNCM-------------------------------VDARRLFERVRWKDTV 330

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            W++MI GYA N    E+L+LF  M + G  PD+VT ++V+ AC  +  L     IH Y+
Sbjct: 331 SWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYL 390

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            K  F  +  V  A++DMY+KCGSL  +R VF+ M  ++++SW++M+  + +HG  R A+
Sbjct: 391 VKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAI 450

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
              + MK  S+ P+   F  +L ACSHAGLV EG+EIF  M  EYN+ P   HY CMVDL
Sbjct: 451 SILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDL 510

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
            GRA  L EA  ++ TM   P   IW +L+ A R+H  I+LAE +A+++  ++P    + 
Sbjct: 511 LGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSY 570

Query: 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           + LSNIYA +KRW DV  +R  ++ +G+ K   CS IE++N V+ FL  D+SH+QT+ IY
Sbjct: 571 ICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIY 630

Query: 617 EKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIV 676
            KLNE+  +LK AGY PD      D+E+E K +++  HSE+LA+ + LI++   + IRI 
Sbjct: 631 AKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAFALINTGPGTVIRIT 690

Query: 677 KNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KNLRVC DCH   KL+S++  REI++RD  RFHH+  G CSC DYW
Sbjct: 691 KNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 191/415 (46%), Gaps = 35/415 (8%)

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLG-FGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
            +L++    +   +G Q+H          ++ ++ T L   Y  CG +  A ++FD +  
Sbjct: 64  ALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVL 123

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           ++   W+ MI GY  NGL  + L L+ EM       D      +L AC     +  G  V
Sbjct: 124 KNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRV 183

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H  ++   +  D ++ ++L+ MYA  G M  A+ +FD++  ++L     M+SGY++    
Sbjct: 184 HSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADS 243

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
             A L+FD M +                                G+  D  T+L ++SAC
Sbjct: 244 GTAFLVFDLMGK-------------------------------AGLFADCTTLLGLLSAC 272

Query: 361 AHLGVLDQAQRIHLYIDKNAFGG-DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           A L  + + + IH Y  +N+ G  +    N++I+MY  C  +  AR +FER+R ++ +SW
Sbjct: 273 ADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSW 332

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            SMI  +A +GDA  +L  F +M  +   P+ VTFI VL AC     +  G  I + +  
Sbjct: 333 NSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVK 392

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
           +            +VD++ +   L  +  + + MP   ++V W +++A   +HG 
Sbjct: 393 K-GFDANTIVGTALVDMYSKCGSLACSRRVFDEMP-DKSLVSWSAMVAGYGLHGR 445


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/622 (38%), Positives = 373/622 (59%), Gaps = 33/622 (5%)

Query: 103  KVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162
            +  L+M  +GL ++   +  +L        + EG +VH    K  +    +++T L+ +Y
Sbjct: 463  EALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLY 522

Query: 163  GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
              C  + DAR + D+M  R++V W+ MI GY Q G   E L+LF EM MS   P+E   +
Sbjct: 523  NKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFA 582

Query: 223  KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
             +L++C+ +     G  +H  +I  +      + S+L+ MYA                  
Sbjct: 583  TVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYA------------------ 624

Query: 283  NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
                         +AG++ +AR +FD + E+D++  +A+ISGYA+    +EAL LF  +Q
Sbjct: 625  -------------KAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQ 671

Query: 343  VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
              GM+ + VT  SV++A + L  LD  +++H ++ +      + + N++IDMY+KCGSL 
Sbjct: 672  REGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLT 731

Query: 403  SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYAC 461
             +R +F+ M  R VISW +M+  ++ HG  R A+  F  MK+E+ + P+ VTF+ VL  C
Sbjct: 732  YSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGC 791

Query: 462  SHAGLVDEGREIFASMTNEYN-IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
            SH G+ D G EIF  M N+ +   P+ EHYGC+VDLFGRA  + EA E ++ MPF P   
Sbjct: 792  SHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAA 851

Query: 521  IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
            IWGSL+ ACRVH  + + EF A++LL+++ ++ G  V+LSN+YA   RW DV  +R+ MK
Sbjct: 852  IWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMK 911

Query: 581  ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
            E+ ++KE   S IE++  ++ F  +DRSH + ++++ K+ E+  ++K AGYVP++   L 
Sbjct: 912  EKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLY 971

Query: 641  DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
            D++DE+K +++  HSEKLAL +GLI +   + +RI+KNLR+C DCHNF K +S+VY RE+
Sbjct: 972  DVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREV 1031

Query: 701  VIRDRTRFHHYKDGVCSCKDYW 722
             +RD+ RFHH   G CSC DYW
Sbjct: 1032 SLRDKNRFHHIVGGTCSCGDYW 1053



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 181/377 (48%), Gaps = 36/377 (9%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL +F++ML  G   + F+F  +L +   + G   G Q+H L  K  F S  FV + L+ 
Sbjct: 562 ALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLD 621

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY   GKI +AR +FD +  RD+V  + +I GY Q GL +E L+LF  ++   +  + + 
Sbjct: 622 MYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVT 681

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
            + +L+A S    L +G  VH  ++   +     LQ++LI MY+ CG +  ++ +FD + 
Sbjct: 682 YASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP 741

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            + ++   AM+ GYS+ G   +A  +F  M E++ +                        
Sbjct: 742 ERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKV------------------------ 777

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRI--HLYIDKNAFGGDLRVNNAIIDMYAKC 398
                 KPD VT L+V+S C+H G+ D+   I   +   K+ F  ++     ++D++ + 
Sbjct: 778 ------KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRA 831

Query: 399 GSLESAREVFERMRRRNVIS-WTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIG 456
           G +E A E  ++M      + W S++ A  +H +         ++ + ES +      + 
Sbjct: 832 GRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILS 891

Query: 457 VLYACSHAGLVDEGREI 473
            LYA   AG  D+ R +
Sbjct: 892 NLYAS--AGRWDDVRTV 906


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/718 (36%), Positives = 403/718 (56%), Gaps = 43/718 (5%)

Query: 9   KPLTLPTSTAISSCSSLT---HMKQTHAQILKLSHSHH-SQNSLLLKLLLTSFSLPTTTP 64
           KP  +  ++ +S+C+S+      KQ H+ ++K+  S        LL L +  F + T   
Sbjct: 311 KPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIET--- 367

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
                A   F         + N  + A         +  +FL+M  EGL  +++++P IL
Sbjct: 368 -----AHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSIL 422

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           +       L  G Q+H    K GF  + +V + L+ MY   G++  AR +  ++   D+V
Sbjct: 423 RTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVV 482

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ MI GY Q+ LF E L LF+EM+   +  D +  S  +SAC+    L+ G+ +H   
Sbjct: 483 SWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIH--- 539

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
                        + I+ Y+                 ++L +  A+VS Y+R G+ +DA 
Sbjct: 540 -----------AQSYISGYS-----------------EDLSIGNALVSLYARCGRAQDAY 571

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
           L F+++  KD I W+A+ISG+A++ H +EAL++F++M   G++ +  T  S +SA A+  
Sbjct: 572 LAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTA 631

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            + Q ++IH  + K  +  +   +N +I +Y+KCGS+E A+  F  M  +NV+SW +MI 
Sbjct: 632 NIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMIT 691

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
            ++ HG    A+  F +MK   + PN VTF+GVL ACSH GLV+EG   F SM+ E+ + 
Sbjct: 692 GYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLV 751

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           PK EHY C+VDL GRA LL  A E +E MP  P+ +IW +L++AC VH  IE+ EFAA+ 
Sbjct: 752 PKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARH 811

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           LL+L+P+     VLLSN+YA   +W      R+ MK+RG+ KE   S IE+ N ++ F  
Sbjct: 812 LLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFV 871

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            DR H   +QIYE ++++       GYV D ++ L D+E E+K      HSEKLA+ +GL
Sbjct: 872 GDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGL 931

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +S      IR++KNLRVC DCHN+IK VSK+  R IV+RD  RFHH++ GVCSCKDYW
Sbjct: 932 LSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 156/589 (26%), Positives = 269/589 (45%), Gaps = 49/589 (8%)

Query: 6   QPTKPLTLPT----STAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSFS 58
           Q  K   +PT    S+ +S+C+ +   K   Q H  I+K   S     + +   L+T +S
Sbjct: 203 QMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLS---SETFVCNALVTLYS 259

Query: 59  LPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
                  +L  A  IFS++        N  I  ++       AL++F KM  + +  D  
Sbjct: 260 ----RWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCV 315

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +   +L A A      +G Q+H    K+G  SD  ++  L+ +Y  C  I  A   F   
Sbjct: 316 TVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTT 375

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
              ++V W+VM+  Y Q G   E   +F +M++  + P++     IL  C+  G L  GE
Sbjct: 376 ETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGE 435

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
            +H  +I +    + ++ S LI MYA  G +D A+G+  ++  +++V  TAM++GY+   
Sbjct: 436 QIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYT--- 492

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
                        + DL                 EALKLF EM+  G++ D +   S IS
Sbjct: 493 -------------QHDLFA---------------EALKLFQEMENQGIRSDNIGFSSAIS 524

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           ACA +  L+Q Q+IH     + +  DL + NA++ +YA+CG  + A   FE++  ++ IS
Sbjct: 525 ACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNIS 584

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           W ++I+ FA  G    AL  F++M    ++ N  TF   + A ++   + +G++I A M 
Sbjct: 585 WNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMI 644

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH--GEIE 536
            +     + E    ++ L+ +   + +A      MP   NVV W +++     H  G   
Sbjct: 645 -KTGYDSETEASNVLITLYSKCGSIEDAKREFFEMP-EKNVVSWNAMITGYSQHGYGSEA 702

Query: 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585
           ++ F   + L L P+H   + +LS         + +   R   KE G++
Sbjct: 703 VSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLV 751



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/469 (27%), Positives = 227/469 (48%), Gaps = 44/469 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A+ +F  IP+      NK I  +         L +F  M+ E +T D  +F  +L+A + 
Sbjct: 64  AIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSG 123

Query: 130 AEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
            +   +   Q+H      GFGS P V   L+ +Y   G +  A+L+F+++  +D V W  
Sbjct: 124 GKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVA 183

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI G  QNG  DE + LF +M  S V P   V S +LSAC++      GE +H FI+   
Sbjct: 184 MISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWG 243

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           ++ +  + + L+T+Y+  G +  A+ +F K+  ++ +   +++SG ++ G          
Sbjct: 244 LSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRG---------- 293

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
                                    AL+LF +MQ+  MKPD VT+ S++SACA +G   +
Sbjct: 294 ---------------------FSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYK 332

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            +++H Y+ K     DL +  +++D+Y KC  +E+A E F      NV+ W  M+ A+  
Sbjct: 333 GKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQ 392

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN---EYNIPP 485
            G+   +   F +M+ E + PN  T+  +L  C+  G +D G +I   +     ++N+  
Sbjct: 393 LGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNV-- 450

Query: 486 KYEHYGC--MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
               Y C  ++D++ +   L  A  +++ +    +VV W +++A    H
Sbjct: 451 ----YVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIAGYTQH 494



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 223/460 (48%), Gaps = 35/460 (7%)

Query: 89  IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148
           I  +S + R   A+ +F +M    +    + F  +L A  + E    G Q+HG   K G 
Sbjct: 185 ISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGL 244

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
            S+ FV   LV +Y   G ++ A  +F KM  RD + ++ +I G  Q G  D  L LFE+
Sbjct: 245 SSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEK 304

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M++  ++PD + ++ +LSAC+  G    G+ +H ++I   ++ D  ++ +L+ +Y  C  
Sbjct: 305 MQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFD 364

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           ++ A   F     +N+V+   M+  Y + G + ++  IF Q                   
Sbjct: 365 IETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQ------------------- 405

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
                       MQ+ G+ P++ T  S++  C  LG LD  ++IH  + K+ F  ++ V 
Sbjct: 406 ------------MQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVC 453

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           + +IDMYAK G L++AR + +R+R  +V+SWT+MI  +  H     AL  F +M+++ I 
Sbjct: 454 SVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIR 513

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFA-SMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            + + F   + AC+    +++G++I A S  + Y+      +   +V L+ R    ++A 
Sbjct: 514 SDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGN--ALVSLYARCGRAQDAY 571

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
              E +    N+  W +L++     G  E A     Q+ Q
Sbjct: 572 LAFEKIDAKDNIS-WNALISGFAQSGHCEEALQVFSQMNQ 610



 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 202/427 (47%), Gaps = 44/427 (10%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           M   G+  +  ++  + +    +  LL+  ++H    K GF  +  + + L+ +Y A G+
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
           + +A  +FD +   ++  W+ +I G     L  +VL LF  M   NV PDE   + +L A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 228 CSRA-GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV 286
           CS         E +H  II +                                   + +V
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFG-------------------------------SSPLV 149

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346
              ++  YS+ G V+ A+L+F+++  KD + W AMISG ++N    EA+ LF +M    +
Sbjct: 150 CNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAV 209

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE 406
            P      SV+SAC  + +    +++H +I K     +  V NA++ +Y++ G+L +A +
Sbjct: 210 IPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQ 269

Query: 407 VFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL 466
           +F +M RR+ IS+ S+I+  A  G +  AL  F KM+ + + P+ VT   +L AC+  G 
Sbjct: 270 IFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGA 329

Query: 467 VDEGREIFA-----SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI 521
             +G+++ +      M+++  I       G ++DL+ +   +  A E   T     NVV+
Sbjct: 330 GYKGKQLHSYVIKMGMSSDLIIE------GSLLDLYVKCFDIETAHEYFLTTE-TENVVL 382

Query: 522 WGSLMAA 528
           W  ++ A
Sbjct: 383 WNVMLVA 389



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 141/361 (39%), Gaps = 79/361 (21%)

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           +   C  +G+L   + +H  I  +    +  L S LI +Y   G +D A  LFD +   N
Sbjct: 16  LFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSN 75

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           +                                 W+ +ISG        + L LF+ M  
Sbjct: 76  VSF-------------------------------WNKVISGLLAKKLASQVLGLFSLMIT 104

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQ-AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
             + PD+ T  SV+ AC+      Q  ++IH  I  + FG    V N +ID+Y+K G ++
Sbjct: 105 ENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVD 164

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            A+ VFER+  ++ +SW +MI+  + +G    A++ F +M   ++ P    F  VL AC+
Sbjct: 165 LAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACT 224

Query: 463 -----------HAGLVDEG------------------------REIFASMTNEYNIPPKY 487
                      H  +V  G                         +IF+ M     I    
Sbjct: 225 KIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRIS--- 281

Query: 488 EHYGCMVDLFGRANLLREALELVETMPF---APNVVIWGSLMAACRVHGEIELAEFAAKQ 544
             Y  ++    +      AL+L E M      P+ V   SL++AC   G    A +  KQ
Sbjct: 282 --YNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVG----AGYKGKQ 335

Query: 545 L 545
           L
Sbjct: 336 L 336


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 256/693 (36%), Positives = 385/693 (55%), Gaps = 41/693 (5%)

Query: 70  ALSIFSQIPAP--PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
           A S+F + P     + + N  I   S ++    A+ +F KM +EG   D F++  +L  +
Sbjct: 99  ARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGL 158

Query: 128 ARA-EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK----ILDARLMFDKMSYRD 182
           A   +   + +Q H    K G G    V   LV +Y  C      +  AR +FD +  +D
Sbjct: 159 ALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKD 218

Query: 183 IVPWSVMIDGYFQNGLFD--------------------------------EVLNLFEEMK 210
              W+ M+ GY +NG FD                                E L +   M 
Sbjct: 219 ERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMV 278

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
            S +E DE     ++ AC+ A  L  G+ VH +++        H  ++L+T+Y  CG  +
Sbjct: 279 SSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRRE-DFSFHFDNSLVTLYYKCGKFN 337

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            A+ +F+K+  K+LV   A++SGY  +G + +A+LIF +M EK+++ W  MISG AEN  
Sbjct: 338 EARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGF 397

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
            +E LKLF+ M+  G +P        I +CA LG     Q+ H  + K  F   L   NA
Sbjct: 398 GEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNA 457

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           +I MYAKCG +E A++VF  M   + +SW ++I A   HG    A+  + +M  + I P+
Sbjct: 458 LITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPD 517

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
            +TF+ VL ACSHAGLVD+GR+ F SM   Y IPP  +HY  ++DL  R+    EA  ++
Sbjct: 518 RITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESII 577

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
           E++PF P   IW +L++ CRVHG +EL   AA +L  L P+HDG  +LLSN+YA   +W+
Sbjct: 578 ESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWE 637

Query: 571 DVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAG 630
           +V  +RK M++RG+ KE ACS IEM  +V+ FL  D SH + + +Y+ L ++  E++  G
Sbjct: 638 EVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLG 697

Query: 631 YVPDIHSALVDLE-DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFI 689
           YVPD    L D+E D  K +++  HSEK+A+ +GL+     + IRI KNLR C DCHNF 
Sbjct: 698 YVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFF 757

Query: 690 KLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + +SKV  R+I++RDR RFHH+++G CSC ++W
Sbjct: 758 RFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 112/451 (24%), Positives = 205/451 (45%), Gaps = 44/451 (9%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDK--MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
           D   +T +V  Y A G I  AR +F++  +S RD V ++ MI G+  N      +NLF +
Sbjct: 79  DKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCK 138

Query: 209 MKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           MK    +PD+   + +L+  +    +       H   + +       + + L+++Y+ C 
Sbjct: 139 MKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCA 198

Query: 268 C----MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK-DLICWSAMI 322
                +  A+ +FD +  K+    T M++GY + G  +  + +   M E   L+ ++AMI
Sbjct: 199 SSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMI 258

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
           SGY      QEAL++   M   G++ D+ T  SVI ACA+  +L   +++H Y+ +    
Sbjct: 259 SGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRRE-D 317

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFER-------------------------------M 411
                +N+++ +Y KCG    AR +FE+                               M
Sbjct: 318 FSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEM 377

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471
           + +N++SW  MI+  A +G     L  F+ MK E  +P    F G + +C+  G    G+
Sbjct: 378 KEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQ 437

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
           +  A +  +            ++ ++ +  ++ EA ++  TMP   + V W +L+AA   
Sbjct: 438 QFHAQLV-KIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMP-CLDSVSWNALIAALGQ 495

Query: 532 HGEIELAEFAAKQLLQ--LDPDHDGALVLLS 560
           HG    A    +++L+  + PD    L +L+
Sbjct: 496 HGHGVEAVDVYEEMLKKGIRPDRITFLTVLT 526



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 174/356 (48%), Gaps = 44/356 (12%)

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
           R  +L    AVH  II       AH+ + LI +Y     +D A+ LFD++   + +  T 
Sbjct: 26  RRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTT 85

Query: 290 MVSGYSRAGQVEDARLIFDQ--MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           MVSGY  +G +  AR +F++  +  +D + ++AMI+G++ NN    A+ LF +M+  G K
Sbjct: 86  MVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFK 145

Query: 348 PDKVTMLSVISACAHLGVLDQAQ--RIHLYIDKNAFGGDLRVNNAIIDMYAKCGS----L 401
           PD  T  SV++  A L V D+ Q  + H    K+  G    V+NA++ +Y++C S    L
Sbjct: 146 PDDFTYASVLAGLA-LVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLL 204

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHG------------DARNALIFFN--------- 440
            SAR+VF+ +  ++  SWT+M+  +  +G            D    L+ +N         
Sbjct: 205 HSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNC 264

Query: 441 -----------KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
                      +M    I+ +  T+  V+ AC++A L+  G+++ A +    +    +++
Sbjct: 265 GLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDN 324

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
              +V L+ +     EA  + E MP A ++V W +L++     G I  A+   K++
Sbjct: 325 --SLVTLYYKCGKFNEARAIFEKMP-AKDLVSWNALLSGYVSSGHIGEAKLIFKEM 377


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/576 (41%), Positives = 354/576 (61%), Gaps = 4/576 (0%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           + F+ T L+  Y   G +  AR + D M+ +  + W+ MI GY  +GLF++ L LF +M+
Sbjct: 222 NEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMR 281

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA----HLQSTLITMYANC 266
           +  V+ DE   + ++SAC+  G    G+ VH +I+ N +  D      + +TLIT+Y   
Sbjct: 282 LLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKY 341

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
           G +D A+ +F ++ +K+++    ++SGY  AG++E+A+  F QM EK+L+ W+ MISG A
Sbjct: 342 GKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLA 401

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
           +N   ++ALKLFN+M++ G +P+       I+AC+ LG L+  +++H  I        L 
Sbjct: 402 QNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLS 461

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
           V NA+I MYA+CG +E+AR +F  M   + +SW SMI A   HG    A+  + +M  E 
Sbjct: 462 VGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEG 521

Query: 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
           I P+  TF+ VL ACSHAGLV+EG   F SM   Y I P  +HY  M+DLF RA    +A
Sbjct: 522 ILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDA 581

Query: 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566
             ++++MPF     IW +L+A CR HG ++L   AA++L +L P HDG  VLLSN+YA  
Sbjct: 582 KNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASL 641

Query: 567 KRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL 626
            RW DV   RK M++RG+ KE ACS  E+ N+V+ FL  D  H +   IY  L ++  E+
Sbjct: 642 GRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEM 701

Query: 627 KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCH 686
           K  GY+PD    L D+E E K   +  HSEKLA+ +GL+   + + +R+ KNLR+C DCH
Sbjct: 702 KKIGYIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRICGDCH 761

Query: 687 NFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           N IK +SKV  REIV+RD  RFHH+K+G CSC++YW
Sbjct: 762 NAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  196 bits (497), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 137/464 (29%), Positives = 223/464 (48%), Gaps = 61/464 (13%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDK--MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
           D   +T L+  Y A G +  AR +F++  +  RD V ++ MI GY         + LF  
Sbjct: 78  DVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRA 137

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGE----AVHEFIIDNNVALDAHLQSTLITMYA 264
           M+ +N +PD+   + +LSA +    + Y E     +H  ++   + +   + + L+++Y 
Sbjct: 138 MRWANFQPDDFTFASVLSASTL---IFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYV 194

Query: 265 NCGC---------MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            C           M  A+ LFD++  +N  + T +++GY R G +  AR I D M E+  
Sbjct: 195 KCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPG 254

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           I W+AMISGY  +   ++AL LF +M++ G++ D+ T  SVISACA  G     +++H Y
Sbjct: 255 IAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAY 314

Query: 376 IDKNAFGGD----LRVNNAIIDMYAKCGSLESAREV------------------------ 407
           I KN    D    L V N +I +Y K G ++ AR++                        
Sbjct: 315 ILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGR 374

Query: 408 -------FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
                  F +M  +N+++WT MI+  A +G    AL  FN+MK +  +PN   F G + A
Sbjct: 375 MEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITA 434

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CS  G ++ GR++ A + +             M+ ++ R  ++  A  +  TMPF  + V
Sbjct: 435 CSVLGALENGRQLHAQIVH-LGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFV-DPV 492

Query: 521 IWGSLMAACRVHGE----IELAEFAAKQLLQLDPDHDGALVLLS 560
            W S++AA   HG     IEL E   K+   + PD    L +LS
Sbjct: 493 SWNSMIAALGQHGHGVKAIELYEQMLKE--GILPDRRTFLTVLS 534



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 158/352 (44%), Gaps = 49/352 (13%)

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
           S    VH  +I +   L  H+ + LI +Y        A+ LFD++   +++  T +++ Y
Sbjct: 30  SLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAY 89

Query: 295 SRAGQVEDARLIFDQ--MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
           S  G ++ AR IF++  +  +D + ++AMI+GY+  N    A++LF  M+    +PD  T
Sbjct: 90  SALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFT 149

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL--RVNNAIIDMYAKC------------ 398
             SV+SA   L   D+ Q   ++     FG ++   V NA++ +Y KC            
Sbjct: 150 FASVLSAST-LIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLM 208

Query: 399 ----------------------------GSLESAREVFERMRRRNVISWTSMINAFAIHG 430
                                       G L  ARE+ + M  +  I+W +MI+ +  HG
Sbjct: 209 ASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHG 268

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS-MTNEYNIPPKY-- 487
              +AL  F KM+   +  +  T+  V+ AC+  G    G+++ A  + NE N    +  
Sbjct: 269 LFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLL 328

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
                ++ L+ +   +  A ++   MP   +++ W +L++     G +E A+
Sbjct: 329 SVGNTLITLYWKYGKVDGARKIFYEMP-VKDIITWNTLLSGYVNAGRMEEAK 379



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 139/322 (43%), Gaps = 16/322 (4%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A S F+Q+P          I  ++ +   + ALK+F +M  +G   + ++F   + A + 
Sbjct: 378 AKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSV 437

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G Q+H     LG  S   V   ++ MY  CG +  AR MF  M + D V W+ M
Sbjct: 438 LGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSM 497

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN-N 248
           I    Q+G   + + L+E+M    + PD      +LSACS AG +  G      +++N  
Sbjct: 498 IAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYG 557

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV-VSTAMVSGYSRAGQ----VEDA 303
           +A      + +I ++   G    AK + D +  +    +  A+++G    G     +E A
Sbjct: 558 IAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAA 617

Query: 304 RLIFDQMVEKD--LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
             +F  + + D   +  S M +     N      KL   M+  G+K +     + +    
Sbjct: 618 EKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKL---MRDRGVKKEPACSWTEVENKV 674

Query: 362 HLGVLD-----QAQRIHLYIDK 378
           H+ ++D     +   I+ Y++K
Sbjct: 675 HVFLVDDTVHPEVLSIYNYLEK 696



 Score = 47.0 bits (110), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 24/203 (11%)

Query: 9   KPLTLPTSTAISSCS---SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +P     + AI++CS   +L + +Q HAQI+ L    H     +   ++T ++      +
Sbjct: 422 EPNDYAFAGAITACSVLGALENGRQLHAQIVHLG---HDSTLSVGNAMITMYARCGIVEA 478

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
               A ++F  +P       N  I A+        A++++ +ML EG+  DR +F  +L 
Sbjct: 479 ----ARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLS 534

Query: 126 AIARAEGLLEG-------MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           A + A  + EG       ++ +G+      G D + +  ++ ++   GK  DA+ + D M
Sbjct: 535 ACSHAGLVEEGNRYFNSMLENYGIAP----GEDHYAR--MIDLFCRAGKFSDAKNVIDSM 588

Query: 179 SYRDIVP-WSVMIDGYFQNGLFD 200
            +    P W  ++ G   +G  D
Sbjct: 589 PFEARAPIWEALLAGCRTHGNMD 611


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 267/717 (37%), Positives = 412/717 (57%), Gaps = 43/717 (5%)

Query: 10  PLTLPTSTAISSCSSLTHMKQ---THAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P T     A+ +C   + +KQ    HA +LK   S +  N  +   L+  ++        
Sbjct: 316 PNTYTFVAALQACEDSSFIKQGMFIHATVLK---SSYYINVFVANALIAMYA----RFGK 368

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           +  A +IF  +    +   N  +     +     AL+ + +M + G   D  +   I+ A
Sbjct: 369 MGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAA 428

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            AR+   L GMQ+H    K G  SD  V   LV MY     +     +FDKM  +D+V W
Sbjct: 429 SARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSW 488

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +I G+ QNG     L LF E+++  ++ D M++S IL ACS    +S  + +H +II 
Sbjct: 489 TTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIR 548

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
                                     KGL D      LV+   +V  Y   G V+ A  +
Sbjct: 549 --------------------------KGLSD------LVLQNGIVDVYGECGNVDYAARM 576

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F+ +  KD++ W++MIS Y  N    EAL+LF+ M+  G++PD ++++S++SA A L  L
Sbjct: 577 FELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSAL 636

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
            + + IH ++ +  F  +  + + ++DMYA+CG+LE +R VF  +R ++++ WTSMINA+
Sbjct: 637 KKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAY 696

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
            +HG  R A+  F +M+DESI P+ + F+ VLYACSH+GL++EGR    SM  EY + P 
Sbjct: 697 GMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPW 756

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            EHY C+VDL GRAN L EA + V+ M   P   +W +L+ AC++H   EL E AA++LL
Sbjct: 757 PEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLL 816

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           ++DP++ G  VL+SN+YA ++RW+DV E+R  MK  G+ K   CS IE+ N+V+ F+  D
Sbjct: 817 EMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARD 876

Query: 607 RSHKQTDQIYEKLNEVISEL-KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           +SH Q+ +IY KL+++  +L K  GYV      L + ++EEK +++  HSE+LA+ YG++
Sbjct: 877 KSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGML 936

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           ++ + + +RI KNLRVC DCHNF KL+SK + RE+V+RD  RFHH+K GVCSC D W
Sbjct: 937 TTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 154/522 (29%), Positives = 253/522 (48%), Gaps = 47/522 (9%)

Query: 16  STAISSCSS---LTHMKQTHAQILKLSHSHHSQNSLLLKLLL-TSFSLPTTTPSSLYYAL 71
           S+ +  C S   L+  +Q HA ++       + N+L   + L T           L  A 
Sbjct: 118 SSVLELCGSKKALSEGQQVHAHMI-------TSNALFNSVFLSTRLVFMYGKCGCLVDAE 170

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
            +F  +P       N  I A   +  P  +L+++ +M   G+ +D  +FP ILKA    +
Sbjct: 171 KLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLK 230

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR-DIVPWSVMI 190
               G +VHGL  K G+ S  FV   +VGMY  C  +  AR +FD+M  + D+V W+ MI
Sbjct: 231 DRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMI 290

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
             Y  NG   E L LF EM+ +++ P+       L AC  +  +  G  +H  ++ ++  
Sbjct: 291 SAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYY 350

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
           ++  + + LI MYA                               R G++ +A  IF  M
Sbjct: 351 INVFVANALIAMYA-------------------------------RFGKMGEAANIFYNM 379

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
            + D I W++M+SG+ +N    EAL+ ++EM+  G KPD V ++S+I+A A  G      
Sbjct: 380 DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGM 439

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
           +IH Y  KN    DL+V N+++DMYAK  S++    +F++M  ++V+SWT++I   A +G
Sbjct: 440 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG 499

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
               AL  F +++ E ID + +    +L ACS   L+   +EI + +  +  +       
Sbjct: 500 SHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK-GLSDLVLQN 558

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
           G +VD++G    +  A  + E + F  +VV W S M +C VH
Sbjct: 559 G-IVDVYGECGNVDYAARMFELIEF-KDVVSWTS-MISCYVH 597



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 203/438 (46%), Gaps = 39/438 (8%)

Query: 119 SFPPILKAIARAEGLLEGMQVHG-LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
           ++  +L+     + L EG QVH  + T     +  F+ T LV MYG CG ++DA  +FD 
Sbjct: 116 AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 175

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           M ++ I  W+ MI  Y  NG     L L+ EM++S +  D      IL AC    +   G
Sbjct: 176 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCG 235

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS-TAMVSGYSR 296
             VH   I         + ++++ MY  C  ++ A+ LFD++  K  VVS  +M+S YS 
Sbjct: 236 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 295

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
            GQ                                 EAL+LF EMQ   + P+  T ++ 
Sbjct: 296 NGQ-------------------------------SIEALRLFGEMQKASLAPNTYTFVAA 324

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           + AC     + Q   IH  + K+++  ++ V NA+I MYA+ G +  A  +F  M   + 
Sbjct: 325 LQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDT 384

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA- 475
           ISW SM++ F  +G    AL F+++M+D    P+ V  I ++ A + +G    G +I A 
Sbjct: 385 ISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAY 444

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           +M N   +    +    +VD++ +   ++    + + MP   +VV W +++A    +G  
Sbjct: 445 AMKN--GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVVSWTTIIAGHAQNGSH 501

Query: 536 E--LAEFAAKQLLQLDPD 551
              L  F   QL  +D D
Sbjct: 502 SRALELFREVQLEGIDLD 519



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 154/335 (45%), Gaps = 36/335 (10%)

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           N  F  + +LF     S    DE   S +L  C     LS G+ VH  +I +N       
Sbjct: 93  NEAFQSLTDLFANQSPSQFSLDE-AYSSVLELCGSKKALSEGQQVHAHMITSN------- 144

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
                              LF+ V L     ST +V  Y + G + DA  +FD M  K +
Sbjct: 145 ------------------ALFNSVFL-----STRLVFMYGKCGCLVDAEKLFDGMPHKTI 181

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
             W+AMI  Y  N  P  +L+L+ EM+V G+  D  T   ++ AC  L        +H  
Sbjct: 182 FTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGL 241

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARN 434
             K  +   + V N+I+ MY KC  L  AR++F+RM  + +V+SW SMI+A++ +G +  
Sbjct: 242 AIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIE 301

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS-MTNEYNIPPKYEHYGCM 493
           AL  F +M+  S+ PN  TF+  L AC  +  + +G  I A+ + + Y I     +   +
Sbjct: 302 ALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVAN--AL 359

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           + ++ R   + EA  +   M    + + W S+++ 
Sbjct: 360 IAMYARFGKMGEAANIFYNMD-DWDTISWNSMLSG 393


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/610 (40%), Positives = 369/610 (60%), Gaps = 37/610 (6%)

Query: 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
           S+P +   L+  Y  CG+    R +FD++  +++V ++VMI  Y  N L+ + L +F+ M
Sbjct: 69  SNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNM 128

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
               ++PD      +L A S + +L  G  +H  ++   + L+  + + LI+MY  CGC+
Sbjct: 129 AGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCL 188

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA-------------------------- 303
             A  + D++  +++V   ++V+G +R GQ +DA                          
Sbjct: 189 VEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAV 248

Query: 304 -----------RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
                      + +F ++  K L+ W+ MI+ Y  N+ P EA+ +F +M+   + PD ++
Sbjct: 249 TNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAIS 308

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           + SV+ AC  L  L   +RIH Y+ +     +L + NA+IDMYAKCG LE AREVF++M+
Sbjct: 309 IASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMK 368

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
            R+V+SWTSMI+A+ ++G  R+A+  F++M+D  ++P+ + F+ VL ACSHAGL+DEGR 
Sbjct: 369 FRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRY 428

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
            F  MT E  I P+ EH+ CMVDL GRA  + EA   ++ MP  PN  +WG+L++ACRV+
Sbjct: 429 YFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVY 488

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
             + +   AA QL QL P+  G  VLLSNIYAK  RW+DV  +R  MK +GI K    S 
Sbjct: 489 SNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSN 548

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652
            E++N V+ FL  D+SH Q+ QIYE+L+  + ++K AGYVP+  SAL D+E+E+K   + 
Sbjct: 549 FELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLA 608

Query: 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712
            HSEKLA+ + ++++   S IRI KNLRVC DCH   KL+SK+  REI IRD  RFHH+ 
Sbjct: 609 VHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFY 668

Query: 713 DGVCSCKDYW 722
           +GVCSC DYW
Sbjct: 669 NGVCSCGDYW 678



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 230/446 (51%), Gaps = 45/446 (10%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV 84
           + ++K+ H++I  + H  HS  SL +KL+  ++++     S+ +    IF +IP      
Sbjct: 51  IKYLKKLHSKIC-IDHDLHSNPSLGIKLM-RAYAVCGEPWSTRH----IFDEIPKKNVVF 104

Query: 85  SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
            N  IR+   +H    AL VF  M   G+  D +++P +LKA + +E L  GMQ+H    
Sbjct: 105 FNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVV 164

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           ++G   + FV  GL+ MYG CG +++A  + D+M  RD+V W+ ++ G  +NG FD+ L 
Sbjct: 165 RVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALE 224

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRA--GNLSY-------------------------- 236
           + +EM++  ++PD   ++ +L A +     N+S+                          
Sbjct: 225 VCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNN 284

Query: 237 ---GEAVHEFII--DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK----NLVVS 287
               EAV  F+   D+ V  DA   ++++    +   + + + + + V+ K    NL++ 
Sbjct: 285 SMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLE 344

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
            A++  Y++ G +E AR +FDQM  +D++ W++MIS Y  N   ++A+ LF+ MQ  G+ 
Sbjct: 345 NALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLN 404

Query: 348 PDKVTMLSVISACAHLGVLDQAQ-RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE 406
           PD +  +SV+SAC+H G+LD+ +    L  ++      +     ++D+  + G ++ A  
Sbjct: 405 PDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYG 464

Query: 407 VFERM-RRRNVISWTSMINAFAIHGD 431
             ++M    N   W ++++A  ++ +
Sbjct: 465 FIKQMPMEPNERVWGALLSACRVYSN 490



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 153/323 (47%), Gaps = 17/323 (5%)

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
           +K   D  L  N  +   ++  Y+  G+    R IFD++ +K+++ ++ MI  Y  N+  
Sbjct: 59  SKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLY 118

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
            +AL +F  M   G+ PD  T   V+ A +    L    +IH  + +     ++ V N +
Sbjct: 119 SDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGL 178

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           I MY KCG L  A  V ++M  R+V+SW S++   A +G   +AL    +M+   + P+ 
Sbjct: 179 ISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDA 238

Query: 452 VTFIGVLYACSHAGL--VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
            T   +L A ++  L  V   +E+F  + N+  +      +  M+ ++   ++  EA+++
Sbjct: 239 GTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVS-----WNVMIAVYMNNSMPAEAVDI 293

Query: 510 ---VETMPFAPNVVIWGSLMAACRVHGEIELA----EFAAKQLLQLDPDHDGALVLLSNI 562
              +E     P+ +   S++ AC     + L     E+  ++ LQ +   + AL+   ++
Sbjct: 294 FLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALI---DM 350

Query: 563 YAKDKRWQDVGELRKSMKERGIL 585
           YAK    +   E+   MK R ++
Sbjct: 351 YAKCGCLEYAREVFDQMKFRDVV 373


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 276/752 (36%), Positives = 414/752 (55%), Gaps = 47/752 (6%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P  P   PT  ++   S L  +  T  +I     + H         LL+S +   + P  
Sbjct: 2   PASPW--PTPRSVRQASQLHALLTTSGRIAHRPSAEH---------LLSSLTNTISAPRH 50

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRA-ISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           L Y LS+F ++P   + + +  +RA +  S    H + +  +M + G+    F+F  + +
Sbjct: 51  LRYVLSLFDRLPHSTTFLFDTALRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFR 110

Query: 126 AIARAEGLLEGM--QVHGLGTKLGFGSD-PFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
             A       G+   +H    +    S  P V   L+ MY + G   DAR  FD++  +D
Sbjct: 111 CCAAGARARAGLCLMLHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKD 170

Query: 183 IVPWSVMIDGYFQNGLFDEVLNL-------------------------------FEEMKM 211
            V W+ +I G  + GL DE   L                               F  M  
Sbjct: 171 AVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLS 230

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
             V PDE+ +   LSACS+  NL  G  +H  +    + +  +L   LI MYA CG +  
Sbjct: 231 DGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQ 290

Query: 272 AKGLFDKVLL-KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
           A+ +FD V   +      A++ GY + G V+ AR +FDQM  +D+I +++MI+GY  +  
Sbjct: 291 AQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGR 350

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
            ++AL+LF +M+  GM+ D  T++S+++ACA LG L   + +H  I++     D+ +  A
Sbjct: 351 LRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTA 410

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           ++DMY KCG ++ A  VF RM  R+V +WT+MI   A +G  ++AL  F +MK +   P 
Sbjct: 411 LLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPT 470

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
            VT+I VL ACSH+ L+DEGR  F  M + + + P+ EHYGCM+DL  R+ LL EA+ LV
Sbjct: 471 SVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLV 530

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
           +TMP  PN VIWGS+++ACRVH  I+LA  AA+ LL+L P+ D   V L NIY   ++W 
Sbjct: 531 QTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWA 590

Query: 571 DVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAG 630
           D   +R  M+ERG+ K    S I +  +V++F+  D+SH  T +I   + E+   LK  G
Sbjct: 591 DAKRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVG 650

Query: 631 YVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIK 690
           Y P      VD+++EEK + +L HSEK+A+ +GLIS      I IVKNLRVCEDCH+ IK
Sbjct: 651 YSPVTSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIK 710

Query: 691 LVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LVS+++ REI++RDR+RFHH++DG CSC D+W
Sbjct: 711 LVSQLWNREIIVRDRSRFHHFRDGACSCNDFW 742


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 276/736 (37%), Positives = 402/736 (54%), Gaps = 86/736 (11%)

Query: 52  LLLTSFSLPTTTPSSLY------------YALSIFSQIPAPPSRVSNKFIRAISWSHRPK 99
           +LLT F   T   S L             Y   IF+ I      + N  IRA   ++ P 
Sbjct: 1   MLLTGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPH 60

Query: 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
            A  ++  ML+  L  D +++P +++A +      E  QVH    KLGF SD +V+  L+
Sbjct: 61  FAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLI 120

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ------------------------ 195
             +  C  + DA  +F++ S  D V W+ ++ GY +                        
Sbjct: 121 NCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNS 180

Query: 196 -------NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI---- 244
                   GL  E   LF+EM    +E D MV    L AC +   + Y EA+  F+    
Sbjct: 181 MIVLFGMRGLVVEACKLFDEM----LEKD-MVTWSALIACFQQNEM-YEEAIRTFVGMHK 234

Query: 245 ----IDNNVALDA-----------------------------HLQSTLITMYANCGCMDM 271
               +D  VA+ A                             +LQ+ LI MY+ CG + +
Sbjct: 235 IGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMV 294

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
           A+ LFD+  L +L+   +M+SGY +   V++A+ IFD M EKD++ WS+MISGYA+N+  
Sbjct: 295 ARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLF 354

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
            E L LF EMQ+ G KPD+ T++SVISACA L  L+Q + +H YI +N    ++ +   +
Sbjct: 355 DETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTL 414

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           IDMY KCG +E+A EVF  M  + + +W ++I   A++G   ++L  F+ MK   + PN 
Sbjct: 415 IDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNE 474

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
           +TF+GVL AC H GLVDEG+  F SM +++ I P  +HYGCMVDL GRA  L+EA EL+ 
Sbjct: 475 ITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLN 534

Query: 512 TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
            MP  P+V  WG+L+ AC+ HG+ E+     ++L++L PDHDG  VLLSNIYA   +W D
Sbjct: 535 RMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDD 594

Query: 572 VGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY 631
           V E+R  M +  +LK   CS IE N  ++EFL  D++H   D I + L E+  +LK  GY
Sbjct: 595 VLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGY 654

Query: 632 VPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKL 691
            PDI+  L+D+++EEK   +  HSEKLA+ +GLI+    + IRI+KNLR+C DCH   KL
Sbjct: 655 TPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKL 714

Query: 692 VSKVYAREIVIRDRTR 707
           +SK + R+IV   R +
Sbjct: 715 ISKAFCRKIVFLFRGQ 730


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 235/614 (38%), Positives = 369/614 (60%), Gaps = 33/614 (5%)

Query: 111 EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD 170
           +GL ++   +  +L        + EG +VH    K  +    +++T L+ +Y  C  + D
Sbjct: 4   QGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGD 63

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           AR + D+M  R++V W+ MI GY Q G   E L+LF EM MS   P+E   + +L++C+ 
Sbjct: 64  ARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTS 123

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
           +     G  +H  +I  +      + S+L+ MYA                          
Sbjct: 124 SSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYA-------------------------- 157

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
                +AG++ +AR +FD + E+D++  +A+ISGYA+    +EAL LF  +Q  GM+ + 
Sbjct: 158 -----KAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNY 212

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           VT  SV++A + L  LD  +++H ++ +      + + N++IDMY+KCGSL  +R +F+ 
Sbjct: 213 VTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDS 272

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDE 469
           M  R VISW +M+  ++ HG  R A+  F  MK+E+ + P+ VTF+ VL  CSH G+ D 
Sbjct: 273 MPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDR 332

Query: 470 GREIFASMTNEYN-IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           G EIF  M N+ +   P+ EHYGC+VDLFGRA  + EA E ++ MPF P   IWGSL+ A
Sbjct: 333 GLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGA 392

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           CRVH  + + EF A++LL+++ ++ G  V+LSN+YA   RW DV  +R+ MKE+ ++KE 
Sbjct: 393 CRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEP 452

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
             S IE++  ++ F  +DRSH + ++++ K+ E+  ++K AGYVP++   L D++DE+K 
Sbjct: 453 GRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKE 512

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
           +++  HSEKLAL +GLI +   + +RI+KNLR+C DCHNF K +S+VY RE+ +RD+ RF
Sbjct: 513 KILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRF 572

Query: 709 HHYKDGVCSCKDYW 722
           HH   G CSC DYW
Sbjct: 573 HHIVGGTCSCGDYW 586



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 181/377 (48%), Gaps = 36/377 (9%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL +F++ML  G   + F+F  +L +   + G   G Q+H L  K  F S  FV + L+ 
Sbjct: 95  ALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLD 154

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY   GKI +AR +FD +  RD+V  + +I GY Q GL +E L+LF  ++   +  + + 
Sbjct: 155 MYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVT 214

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
            + +L+A S    L +G  VH  ++   +     LQ++LI MY+ CG +  ++ +FD + 
Sbjct: 215 YASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP 274

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            + ++   AM+ GYS+ G   +A  +F  M E++ +                        
Sbjct: 275 ERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKV------------------------ 310

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRI--HLYIDKNAFGGDLRVNNAIIDMYAKC 398
                 KPD VT L+V+S C+H G+ D+   I   +   K+ F  ++     ++D++ + 
Sbjct: 311 ------KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRA 364

Query: 399 GSLESAREVFERMRRRNVIS-WTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIG 456
           G +E A E  ++M      + W S++ A  +H +         ++ + ES +      + 
Sbjct: 365 GRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILS 424

Query: 457 VLYACSHAGLVDEGREI 473
            LYA   AG  D+ R +
Sbjct: 425 NLYAS--AGRWDDVRTV 439



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 131/301 (43%), Gaps = 19/301 (6%)

Query: 8   TKPLTLPTSTAISSCSSLTHM---KQTHAQILKLS-HSHHSQNSLLLKLLLTSFSLPTTT 63
           T P     +T ++SC+S +     +Q H+ ++K S  SH    S LL +   +       
Sbjct: 107 TAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKA------- 159

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
              +  A  +F  +P          I   +     + AL +F ++  EG+  +  ++  +
Sbjct: 160 -GKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASV 218

Query: 124 LKAIARAEGLLEGMQVHG--LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
           L A++    L  G QVH   L  KL F     +Q  L+ MY  CG +  +R +FD M  R
Sbjct: 219 LTALSGLAALDHGRQVHSHVLRAKLPFYV--VLQNSLIDMYSKCGSLTYSRRIFDSMPER 276

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAV 240
            ++ W+ M+ GY ++GL  E + LF+ MK  N V+PD +    +LS CS  G    G  +
Sbjct: 277 TVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEI 336

Query: 241 HEFIIDNNVALDAHLQ--STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
              +++     +  ++    ++ ++   G ++ A     K+  +        + G  R  
Sbjct: 337 FYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVH 396

Query: 299 Q 299
           Q
Sbjct: 397 Q 397


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/706 (35%), Positives = 395/706 (55%), Gaps = 21/706 (2%)

Query: 38  LSHSHHSQNSLLLKLLLTSF---SLPTTTPSSLYYAL--------------SIFSQIPAP 80
            S +H +Q+S + K L ++    S+PT  PS L   L               +F  IP P
Sbjct: 36  FSITHSTQSSSIWKQLTSTKVAPSVPTNIPSHLGLRLLKAALNVGDFRRAQQLFDNIPQP 95

Query: 81  PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVH 140
                +  I A +    P  A++++  +   G+      F  + KA   +       +VH
Sbjct: 96  DPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKEVH 155

Query: 141 GLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
               + G  SD F+   L+  YG C  +  AR +FD +  +D+V W+ M   Y   GL  
Sbjct: 156 DDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPR 215

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
             L +F EM  + V+P+ + LS IL ACS   +L  G A+H F + + +  +  + S L+
Sbjct: 216 LGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALV 275

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM----VEKDLI 316
           ++YA C  +  A+ +FD +  +++V    +++ Y    + +    +F QM    VE D  
Sbjct: 276 SLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEA 335

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            W+A+I G  EN   ++A+++  +MQ  G KP+++T+ S + AC+ L  L   + +H Y+
Sbjct: 336 TWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYV 395

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            ++   GDL    A++ MYAKCG L  +R VF+ + R++V++W +MI A A+HG+ R  L
Sbjct: 396 FRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVL 455

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
           + F  M    I PN VTF GVL  CSH+ LV+EG +IF SM  ++ + P   HY CMVD+
Sbjct: 456 LLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDV 515

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
           F RA  L EA E ++ MP  P    WG+L+ ACRV+  +ELA+ +A +L +++P++ G  
Sbjct: 516 FSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNY 575

Query: 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           V L NI    K W +  E R  MKERGI K   CS +++ + V+ F+  D+++ ++D+IY
Sbjct: 576 VSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIY 635

Query: 617 EKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIV 676
             L+E+  ++K AGY PD    L D++ EEK E +  HSEKLA+ +G+++    S IR+ 
Sbjct: 636 NFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCSHSEKLAVAFGILNLNGQSSIRVF 695

Query: 677 KNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KNLR+C DCHN IK VSKV    I++RD  RFHH+++G CSC+D W
Sbjct: 696 KNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQDLW 741


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 261/699 (37%), Positives = 401/699 (57%), Gaps = 68/699 (9%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV 84
           L  ++  HAQ++K     H+ N  L KL+   F + +     L YA+S+F  I  P   +
Sbjct: 3   LQSLRMIHAQMIKTGL--HNTNYALSKLI--EFCILSPHFDGLPYAISVFETIQEPNLLI 58

Query: 85  SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
            N   R  + S  P  ALK+++ M++ GL  + ++FP +LK+ A+++   EG Q+HG   
Sbjct: 59  WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVL 118

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDA-------------------------------RL 173
           KLG   D +V T L+ MY   G++ DA                               + 
Sbjct: 119 KLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQK 178

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           MFD++  +D+V W+ MI GY + G + E L LF++M  +NV PDE  +  ++SAC+++G+
Sbjct: 179 MFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 238

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           +  G  VH +I D+                                   NL +  A++  
Sbjct: 239 IELGRQVHSWIDDHGFG-------------------------------SNLKIVNALIDL 267

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           YS+ G++E A  +F+ +  KD+I W+ +I GY   N  +EAL LF EM   G  P+ VTM
Sbjct: 268 YSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 327

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERM 411
           LS++ ACAHLG +D  + IH+YIDK   G      +  ++IDMYAKCG +E+A +VF  +
Sbjct: 328 LSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSI 387

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471
             +++ SW +MI  FA+HG A  +   F++M+   I+P+ +TF+G+L ACSH+G++D GR
Sbjct: 388 LHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR 447

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
            IF SMT +Y + PK EHYGCM+DL G + L +EA E++ TM   P+ VIW SL+ AC++
Sbjct: 448 HIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKM 507

Query: 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACS 591
           HG +EL E  A+ L++++P++ G+ VLLSNIYA   RW +V   R  + ++G+ K   CS
Sbjct: 508 HGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCS 567

Query: 592 RIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVI 651
            IE+++ V+EF+  D+ H +  +IY  L E+   L+ AG+VPD    L ++E+E K   +
Sbjct: 568 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGAL 627

Query: 652 LWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIK 690
             HSEKLA+ +GLIS+K  + + IVKNLRVC +CH   K
Sbjct: 628 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAYK 666


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/692 (37%), Positives = 391/692 (56%), Gaps = 68/692 (9%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + ALK+F +M  EG+  + F+F  +L  +A    + +G+QVH +  K G  S  FV   +
Sbjct: 175 EQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSM 234

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           V MY     + DA+ +FD M  R+ V W+ MI G+  NGL  E   LF  M++  V+  +
Sbjct: 235 VNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQ 294

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL------------------- 259
            + + ++  C+    +S+ + +H  +I N    D ++++ L                   
Sbjct: 295 TIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCM 354

Query: 260 -------------ITMYANCGCMDMAKGLF---------------DKVLLKNLVVS---- 287
                        I+ Y   G  D A  LF                 +L  N  VS    
Sbjct: 355 MHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQI 414

Query: 288 ----------------TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
                           TA+   YS+ G   +A  IF+ + EKD++ WSAM+SGYA+    
Sbjct: 415 HALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDI 474

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAH-LGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
           + A+K+F ++   G++P++ T  SV++ACA     ++Q ++ H    K+ F   L V++A
Sbjct: 475 EGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSA 534

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           ++ MYAK G++ESA EVF+R   R+++SW SMI+ +A HG  + +L  F +M+ ++++ +
Sbjct: 535 LVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELD 594

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
           G+TFIGV+ AC+HAGLV+EG+  F  M  +Y+I P  EHY CMVDL+ RA +L +A++L+
Sbjct: 595 GITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLI 654

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
             MPF     IW +L+AACRVH  ++L E AA++L+ L P    A VLLSNIYA    WQ
Sbjct: 655 NKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQ 714

Query: 571 DVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAG 630
           +  ++RK M  + + KE   S IE+ N+ + F+  D SH Q+D+IY KL E+   LK AG
Sbjct: 715 ERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAG 774

Query: 631 YVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIK 690
           Y PD    L D+E+E K  ++  HSE+LA+ +GLI++   + I+IVKNLRVC DCH  IK
Sbjct: 775 YYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIK 834

Query: 691 LVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           L+SK+  R+IV+RD  RFHH+K G CSC DYW
Sbjct: 835 LISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/481 (25%), Positives = 220/481 (45%), Gaps = 41/481 (8%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           ++  +F + P      +N  +   S + + K AL +FL +   G   D  S   +LK   
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
                + G QVH    K GF  D  V T LV MY     + D   +FD+M  +++V W+ 
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           ++ GY QNGL ++ L LF +M++  ++P+    + +L   +  G +  G  VH  +I + 
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           +     + ++++ MY+    +  AK +FD                               
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFD------------------------------- 252

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
            M  ++ + W++MI+G+  N    EA +LF  M++ G+K  +    +VI  CA++  +  
Sbjct: 253 SMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSF 312

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-RNVISWTSMINAFA 427
           A+++H  + KN    DL +  A++  Y+KC  ++ A ++F  M   +NV+SWT++I+ + 
Sbjct: 313 AKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYV 372

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            +G    A+  F +M+ E + PN  T+  +L A  +A +           TN  N P   
Sbjct: 373 QNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA--NAAVSPSQIHALVVKTNYENSPSVG 430

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
                     G AN   +  EL++      ++V W ++++     G+I   E A K  LQ
Sbjct: 431 TALSDSYSKIGDANEAAKIFELIDE----KDIVAWSAMLSGYAQMGDI---EGAVKIFLQ 483

Query: 548 L 548
           L
Sbjct: 484 L 484



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 196/421 (46%), Gaps = 49/421 (11%)

Query: 16  STAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALS 72
           +T I  C+++  M   KQ H Q++K    + S   L +K   T+  +  +  S +  A  
Sbjct: 298 ATVIKLCANIKEMSFAKQLHCQVIK----NGSDFDLNIK---TALMVAYSKCSEIDDAFK 350

Query: 73  IFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
           +F  +    + VS    I     + R   A+ +F +M  EG+  + F++  IL A A   
Sbjct: 351 LFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANA--- 407

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
             +   Q+H L  K  + + P V T L   Y   G   +A  +F+ +  +DIV WS M+ 
Sbjct: 408 -AVSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLS 466

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVA 250
           GY Q G  +  + +F ++    VEP+E   S +L+AC+    ++  G+  H   I +  +
Sbjct: 467 GYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFS 526

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
               + S L+TMYA  G ++ A  +F + + ++LV   +M+SGY++ G            
Sbjct: 527 NALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHG------------ 574

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
                 C              +++LK+F EM+   ++ D +T + VISAC H G++++ Q
Sbjct: 575 ------C-------------GKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQ 615

Query: 371 R-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAI 428
           R   L +        +   + ++D+Y++ G LE A ++  +M        W +++ A  +
Sbjct: 616 RYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRV 675

Query: 429 H 429
           H
Sbjct: 676 H 676


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/667 (37%), Positives = 376/667 (56%), Gaps = 44/667 (6%)

Query: 65  SSLYYALS-------IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTID 116
           + LY+ LS       +F  +P+P + + N  +  +S S     AL+ F++M   G +  D
Sbjct: 165 AKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLSGSE----ALEAFVRMAGAGSVRPD 220

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
             +   +L A A       G  VH  G K G      V TGL+ +Y  CG +  AR +FD
Sbjct: 221 STTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFD 280

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
           +M   D+V ++ +I GY  NG+    + LF+E+    + P    L  ++   S  G+   
Sbjct: 281 RMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPL 340

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
              +H  ++     LDA                             N  VSTA+ + Y R
Sbjct: 341 AGCLHAHVV--KAGLDA-----------------------------NAPVSTALTTLYCR 369

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
              ++ AR  FD M EK +  W+AMISGYA+N   + A+ LF +MQ   ++P+ +T+ S 
Sbjct: 370 FNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSA 429

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           +SACA LG L   + +H  I       ++ V  A+IDMY KCGS+  AR +F+ M  +NV
Sbjct: 430 LSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNV 489

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           +SW  MI+ + +HG    AL  +  M D  + P   TF+ VLYACSH GLV EG  +F S
Sbjct: 490 VSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRS 549

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP-FAPNVVIWGSLMAACRVHGEI 535
           MT++Y I P  EH  CMVDL GRA  L+EA EL+   P  A    IWG+L+ AC VH + 
Sbjct: 550 MTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDG 609

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           +LA+ A+++L +L+P++ G  VLLSN+Y   K++ +   +R+  K R ++K   C+ IE+
Sbjct: 610 DLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEI 669

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
            +  + F+  DR+H Q+D IY  L ++ +++  AGY PD  +AL D+E+EEK  ++  HS
Sbjct: 670 GDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHS 729

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ +GL++++  + IRI+KNLRVC DCHN  K++SKV  R IV+RD +RFHH++DGV
Sbjct: 730 EKLAIAFGLLNTEPGTEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGV 789

Query: 716 CSCKDYW 722
           CSC DYW
Sbjct: 790 CSCGDYW 796



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 132/532 (24%), Positives = 231/532 (43%), Gaps = 74/532 (13%)

Query: 19  ISSCSSLTHMKQTHAQILKLSH---SHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
           IS  S+L H+ Q  A  L   H    H   +SLLL+     ++   + P+ L   L ++ 
Sbjct: 31  ISLSSTLGHLDQLLAVSLASGHYTLDHAPASSLLLR-----YASLRSPPAHL---LRLYR 82

Query: 76  QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
             P P   + N  +R++     P     +         + D FSF     A + A     
Sbjct: 83  AFPRPDRFLRNSLLRSL-----PTLRADLLFP------SPDSFSF--AFAATSLASSCSR 129

Query: 136 G------------MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           G              +H L    GF +D FV + L  +Y    +  DAR +FD +   D 
Sbjct: 130 GGISPPSAASAALRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDT 189

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMK-MSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           V W+ ++ G   +    E L  F  M    +V PD   L+ +L A +   N + G  VH 
Sbjct: 190 VLWNTLLAGLSGS----EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHA 245

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           F     +A   H+ + LI++YA CG M+ A+ LFD++   +LV   A++SGYS  G V  
Sbjct: 246 FGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMV-- 303

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
                                          +++LF E+   G++P   T++++I   + 
Sbjct: 304 -----------------------------GSSVELFKELVGMGLRPSSSTLVALIPVHSP 334

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
            G    A  +H ++ K     +  V+ A+  +Y +   ++SAR  F+ M  + + SW +M
Sbjct: 335 FGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAM 394

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I+ +A +G    A+  F +M+  ++ PN +T    L AC+  G +  G+ +   + NE  
Sbjct: 395 ISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANE-K 453

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
           +         ++D++ +   + EA  + ++M    NVV W  +++   +HG+
Sbjct: 454 LELNVYVMTALIDMYVKCGSIAEARCIFDSMD-NKNVVSWNVMISGYGLHGQ 504


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/614 (39%), Positives = 375/614 (61%), Gaps = 5/614 (0%)

Query: 114 TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI-LD-A 171
           ++ R +  P +  +     L E  Q+H      G  ++P      V          LD A
Sbjct: 3   SVKRIAKHPTISLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYA 62

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN---VEPDEMVLSKILSAC 228
             + +  +   +   + MI  Y ++    +  + +  +  SN   + PD    + ++  C
Sbjct: 63  NKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTC 122

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
           ++      G  VH  +I +   LD H+Q+ L+ MYA  GC+     +FD  +  +LV  T
Sbjct: 123 AQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQT 182

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
           AM++  ++ G ++ AR +FD+M E+D + W+AMI+GYA+    +EAL +F+ MQ+ G+K 
Sbjct: 183 AMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKL 242

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
           ++V+M+ V+SAC HL VLD  + +H Y+++      + +  A++DMYAKCG+++ A +VF
Sbjct: 243 NEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVF 302

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
             M+ RNV +W+S I   A++G    +L  FN MK E + PNG+TFI VL  CS  GLV+
Sbjct: 303 WGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVE 362

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           EGR+ F SM N Y I P+ EHYG MVD++GRA  L+EAL  + +MP  P+V  W +L+ A
Sbjct: 363 EGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHA 422

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           CR++   EL E A +++++L+  +DGA VLLSNIYA  K W+ V  LR++MK +G+ K  
Sbjct: 423 CRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLP 482

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
            CS IE++ EV+EF+  D+SH + D+I  KL E+   L+ +GYV + +  L D+E+EEK 
Sbjct: 483 GCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKE 542

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
           + +  HSEK+A+ +GLIS K    IR+V NLR+C DCHN  K++SK++ REI++RDR RF
Sbjct: 543 DALSKHSEKVAIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMISKIFNREIIVRDRNRF 602

Query: 709 HHYKDGVCSCKDYW 722
           HH+KDG CSCKDYW
Sbjct: 603 HHFKDGECSCKDYW 616



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 219/453 (48%), Gaps = 82/453 (18%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILK---LSHSH-HSQNSLLLKLLLTSFSLPTTTPSSLYY 69
           PT + ++SC++L  MKQ HAQ++    L++ H H Q        + + +L  TT  +L Y
Sbjct: 11  PTISLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQ-------FVATIALHNTT--NLDY 61

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML---NEGLTIDRFSFPPILKA 126
           A  + +    P     N  IRA S S  P  +   +  +L   N  L+ D ++F  +++ 
Sbjct: 62  ANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRT 121

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY--------------GA-------- 164
            A+ +  + G+ VHG   K GF  DP VQTGLV MY              GA        
Sbjct: 122 CAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQ 181

Query: 165 ---------CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
                    CG I  AR MFD+M  RD V W+ MI GY Q G   E L++F  M+M  V+
Sbjct: 182 TAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVK 241

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
            +E+ +  +LSAC+    L +G  VH ++    V +   L + L+ MYA CG +D     
Sbjct: 242 LNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVD----- 296

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
                               RA QV      F  M E+++  WS+ I G A N   +E+L
Sbjct: 297 --------------------RAMQV------FWGMKERNVYTWSSAIGGLAMNGFGEESL 330

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF--GGDLRVNNAIID 393
            LFN+M+  G++P+ +T +SV+  C+ +G++++ ++ H    +N +  G  L     ++D
Sbjct: 331 DLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRK-HFDSMRNVYGIGPQLEHYGLMVD 389

Query: 394 MYAKCGSLESAREVFERM-RRRNVISWTSMINA 425
           MY + G L+ A      M  R +V +W+++++A
Sbjct: 390 MYGRAGRLKEALNFINSMPMRPHVGAWSALLHA 422


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/637 (36%), Positives = 383/637 (60%), Gaps = 13/637 (2%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           +  +K+F  M+NEG+  D F FP + KA +  +    G  V+     +GF  +  V+  +
Sbjct: 93  EETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSI 152

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + M+  CG++  AR  F+++ ++D+  W++M+ GY   G F + LN+F +M +  V+P+ 
Sbjct: 153 LDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNS 212

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIID-NNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           + ++  +SAC+    L +G  +H + I    +  D  + ++L+  YA C  +++A+  F 
Sbjct: 213 ITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFG 272

Query: 278 KVLLKNLVVSTAM--VSGYSRAGQVEDA-----RL-----IFDQMVEKDLICWSAMISGY 325
            +   +LV   AM  V+G+++ G  + A     R+     +F ++  +D++ W+++IS  
Sbjct: 273 MIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISAC 332

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385
           A++     AL L  EM +  ++ + VTM+S + AC+ L  L Q + IH +I +       
Sbjct: 333 AQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCN 392

Query: 386 RVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDE 445
            + N++IDMY +CGS++ +R +F+ M +R+++SW  MI+ + +HG   +A+  F + +  
Sbjct: 393 FILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTM 452

Query: 446 SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505
            + PN +TF  +L ACSH+GL++EG + F  M  EY + P  E Y CMVDL  RA    E
Sbjct: 453 GLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNE 512

Query: 506 ALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565
            LE +E MPF PN  +WGSL+ ACR+H   +LAE+AA+ L +L+P   G  VL++NIY+ 
Sbjct: 513 TLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSA 572

Query: 566 DKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISE 625
             RW+D  ++R  MKERG+ K   CS IE+  +++ F+  D SH   +QI  K+  +  +
Sbjct: 573 AGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFD 632

Query: 626 LKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDC 685
           +K  GYVPD +  L D++++EK   +  HSEK+AL +GLIS+   + +RI+KNLRVC DC
Sbjct: 633 IKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDC 692

Query: 686 HNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           H+  K +SKV  R+I++RD  RFHH+ DGVCSC DYW
Sbjct: 693 HSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 134/540 (24%), Positives = 243/540 (45%), Gaps = 91/540 (16%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +  IL+   +   L  G QVH      G     F+ + L+ +Y   G + DAR MFDKMS
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 72

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            R++  W+ +++ Y   G ++E + LF  M    V PD  V  K+  ACS   N   G+ 
Sbjct: 73  ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 132

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           V+++++      ++ ++ +++ M+  CG MD+A+  F+++  K++ +   MVSGY+  G+
Sbjct: 133 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 192

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
                                           ++AL +F +M + G+KP+ +T+ S +SA
Sbjct: 193 F-------------------------------KKALNVFRKMVLEGVKPNSITIASAVSA 221

Query: 360 CAHLGVLDQAQRIHLY-IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           C +L +L   + IH Y I       DL V N+++D YAKC S+E AR  F  +++ +++S
Sbjct: 222 CTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVS 281

Query: 419 WTSM--INAFAIHGDARNALIFFNKM------------KD-------------------- 444
           W +M  +  F  +GD + AL FF +M            +D                    
Sbjct: 282 WNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNA 341

Query: 445 ---------ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
                     +++ N VT +  L ACS    + +G+EI   +     +         ++D
Sbjct: 342 LDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFII-RCGLDTCNFILNSLID 400

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG----EIELAEFAAKQLLQLDPD 551
           ++GR   ++++  + + MP   ++V W  +++   +HG     + L  F   + + L P+
Sbjct: 401 MYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGMHGFGMDAVNL--FQQFRTMGLKPN 457

Query: 552 HDGALVLLSNIYAK---DKRWQDVGELRKSMKERGILKERAC-----SRIEMNNEVYEFL 603
           H     LLS        ++ W+    ++        +++ AC     SR    NE  EF+
Sbjct: 458 HITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFI 517



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 121/265 (45%), Gaps = 33/265 (12%)

Query: 211 MSNVEPDEMV--LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M    PDE +   + IL  C +  NL  G  VH  ++ N V +   L S L+ +Y   GC
Sbjct: 1   MDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGC 60

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           ++ A+ +FDK+  +N+   TA++  Y   G  E                           
Sbjct: 61  VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYE--------------------------- 93

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
               E +KLF  M   G++PD      V  AC+ L      + ++ Y+    F G+  V 
Sbjct: 94  ----ETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVK 149

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
            +I+DM+ KCG ++ AR  FE +  ++V  W  M++ +   G+ + AL  F KM  E + 
Sbjct: 150 GSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVK 209

Query: 449 PNGVTFIGVLYACSHAGLVDEGREI 473
           PN +T    + AC++  L+  GREI
Sbjct: 210 PNSITIASAVSACTNLSLLRHGREI 234



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 125/272 (45%), Gaps = 40/272 (14%)

Query: 6   QPTKPLTLPTSTAISSCSSLT---HMKQTHAQILKLSHSHHS---QNSLL---------- 49
           +  KP ++  ++A+S+C++L+   H ++ H   +K+          NSL+          
Sbjct: 206 EGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVE 265

Query: 50  ------------------LKLLLTSFSLPTTTPSSLYY------ALSIFSQIPAPPSRVS 85
                               L +T F+      ++L +      A S+FS++      V 
Sbjct: 266 VARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVW 325

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I A + S R  +AL +  +M    + ++  +    L A ++   L +G ++H    +
Sbjct: 326 NSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIR 385

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
            G  +  F+   L+ MYG CG I  +R +FD M  RD+V W+VMI  Y  +G   + +NL
Sbjct: 386 CGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNL 445

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           F++ +   ++P+ +  + +LSACS +G +  G
Sbjct: 446 FQQFRTMGLKPNHITFTNLLSACSHSGLIEEG 477


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 242/623 (38%), Positives = 384/623 (61%), Gaps = 10/623 (1%)

Query: 14  PTSTAISSCSSLTHMKQTHAQIL--KLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYAL 71
           P  + +  C S++ +KQ  +Q++   L     + + L+    ++ +         L Y  
Sbjct: 8   PFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWR-------DLDYCT 60

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLN-EGLTIDRFSFPPILKAIARA 130
           +I      P +   N  IR    S  P+ A+ ++ ++L  +G   D +++P + KA AR 
Sbjct: 61  NILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARL 120

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
             +  G ++ G    LGF SD FV   ++ +  +CG +  AR MFDK   RD+V W+ MI
Sbjct: 121 SLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMI 180

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
           +GY + G   E LN + EMK+  ++PDE+ +  ++S+C++  +L  G   H +I +N + 
Sbjct: 181 NGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLK 240

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
           L   L + L+ MY  CG ++ A+ LFD +  K +V  T MV GY+++G ++ A  +FD+M
Sbjct: 241 LTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEM 300

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
            +KD++ W+AMI GY   N  +EAL LFNEMQ   + PD+VTM+S +SAC+ LG LD   
Sbjct: 301 PDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGI 360

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
            IH YI+K+    ++ +  A+IDMYAKCG +  A +VF+ +  RN ++WT++I+  A+HG
Sbjct: 361 WIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHG 420

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
           +A  A+ +F++M D S+ P+ VTF+G+L AC H GLV+EGR+ F+ M++++N+ PK +HY
Sbjct: 421 NAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHY 480

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
            CMVDL GRA LL EA EL+++MP   + V+WG+L  ACR+HG + + E AA +LLQ+DP
Sbjct: 481 SCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDP 540

Query: 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK 610
              G  VLL+N+Y + + W++ G+ RK M++RG+ K   CS IE+N  VYEF+  D+SH 
Sbjct: 541 HDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHP 600

Query: 611 QTDQIYEKLNEVISELKPAGYVP 633
           Q++QIYE L ++  +L+     P
Sbjct: 601 QSEQIYECLIQLTRQLELVECTP 623


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/708 (36%), Positives = 396/708 (55%), Gaps = 40/708 (5%)

Query: 18  AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI 77
           ++++  SLT   Q HA +   +     +N+ L   L   +++    P    YA  IF QI
Sbjct: 31  SLTNSKSLTQALQLHAHVT--TGGTLRRNTYLATKLAACYAVCGHMP----YAQHIFDQI 84

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
               S + N  IR  + ++ P  AL ++LKML+ G   D F++P +LKA         G 
Sbjct: 85  VLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGR 144

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           +VH L    G   D +V   ++ MY   G +  AR++FD+M  RD+  W+ M+ G+ +NG
Sbjct: 145 KVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNG 204

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA---LDAH 254
                  +F +M+      D   L  +LSAC    +L  G+ +H +++ N  +    +  
Sbjct: 205 EARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGF 264

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           L +++I MY NC                                 V  AR +F+ +  KD
Sbjct: 265 LMNSIIDMYCNCE-------------------------------SVSCARKLFEGLRVKD 293

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           ++ W+++ISGY +     +AL+LF  M V G  PD+VT++SV++AC  +  L     +  
Sbjct: 294 VVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQS 353

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           Y+ K  +  ++ V  A+I MYA CGSL  A  VF+ M  +N+ + T M+  F IHG  R 
Sbjct: 354 YVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGRE 413

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           A+  F +M  + + P+   F  VL ACSH+GLVDEG+EIF  MT +Y++ P+  HY C+V
Sbjct: 414 AISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLV 473

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DL GRA  L EA  ++E M   PN  +W +L++ACR+H  ++LA  +A++L +L+PD   
Sbjct: 474 DLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVS 533

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
             V LSNIYA ++RW+DV  +R  + +R + K  + S +E+N  V++F   D SH+Q+D 
Sbjct: 534 GYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDD 593

Query: 615 IYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIR 674
           IY KL ++  +LK AGY PD    L D+E+E K +++  HSE+LAL + LI++   + IR
Sbjct: 594 IYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIR 653

Query: 675 IVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           I KNLRVC DCH  IK++SK+  REI++RD  RFHH++DG+CSC  YW
Sbjct: 654 ITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 172/354 (48%), Gaps = 35/354 (9%)

Query: 114 TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG-FGSDPFVQTGLVGMYGACGKILDAR 172
           T D      +L+++  ++ L + +Q+H   T  G    + ++ T L   Y  CG +  A+
Sbjct: 19  TFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQ 78

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
            +FD++  ++   W+ MI GY  N      L L+ +M     +PD      +L AC    
Sbjct: 79  HIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLL 138

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
               G  VH  ++   +  D ++ +++++MY   G ++ A+ +FD++L+++L     M+S
Sbjct: 139 LREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMS 198

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
           G+ + G+                                + A ++F +M+  G   D+ T
Sbjct: 199 GFVKNGE-------------------------------ARGAFEVFGDMRRDGFVGDRTT 227

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL---RVNNAIIDMYAKCGSLESAREVFE 409
           +L+++SAC  +  L   + IH Y+ +N   G +    + N+IIDMY  C S+  AR++FE
Sbjct: 228 LLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFE 287

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
            +R ++V+SW S+I+ +   GDA  AL  F +M      P+ VT I VL AC+ 
Sbjct: 288 GLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQ 341


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/717 (36%), Positives = 411/717 (57%), Gaps = 43/717 (5%)

Query: 10  PLTLPTSTAISSCSSLTHMKQ---THAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P T     A+ +C   + +KQ    HA +LK   S +  N  +   L+  ++        
Sbjct: 280 PNTYTFVAALQACEDSSFIKQGMFIHATVLK---SSYYINVFVANALIAMYA----RFGK 332

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           +  A +IF  +    +   N  +     +     AL+ + +M + G   D  +   I+ A
Sbjct: 333 MGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAA 392

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            AR+   L GMQ+H    K G  SD  V   LV MY     +     +FDKM  +D+V W
Sbjct: 393 SARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSW 452

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +I G+ QNG     L LF E+++  ++ D M++S IL ACS    +S  + +H +II 
Sbjct: 453 TTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIR 512

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
                                     KGL D      LV+   +V  Y   G V+ A  +
Sbjct: 513 --------------------------KGLSD------LVLQNGIVDVYGECGNVDYAARM 540

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F+ +  KD++ W++MIS Y  N    EAL+LF+ M+  G++PD ++++S++SA A L  L
Sbjct: 541 FELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSAL 600

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
            + + IH ++ +  F  +  + + ++DMYA+CG+LE +R VF  +R ++++ WTSMINA+
Sbjct: 601 KKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAY 660

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
            +HG  R A+  F +M+DESI P+ + F+ VLYACSH+GL++EGR    SM  EY + P 
Sbjct: 661 GMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPW 720

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            EHY C+VDL GRAN L EA + V+ M   P   +W +L+ AC++H   EL E AA++LL
Sbjct: 721 PEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLL 780

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           ++DP++ G  VL+SN+Y+ ++RW+DV  +R  MK  G+ K   CS IE+ N+V+ F+  D
Sbjct: 781 EMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARD 840

Query: 607 RSHKQTDQIYEKLNEVISEL-KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           +SH Q+ +IY KL+++  +L K  GYV      L + ++EEK +++  HSE+LA+ YG++
Sbjct: 841 KSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGML 900

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           ++ + + +RI KNLRVC DCHNF KL+SK + RE+V+RD  RFHH+K GVCSC D W
Sbjct: 901 TTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 154/522 (29%), Positives = 253/522 (48%), Gaps = 47/522 (9%)

Query: 16  STAISSCSS---LTHMKQTHAQILKLSHSHHSQNSLLLKLLL-TSFSLPTTTPSSLYYAL 71
           S+ +  C S   L+  +Q HA ++       + N+L   + L T           L  A 
Sbjct: 82  SSVLELCGSKKALSEGQQVHAHMI-------TSNALFNSVFLSTRLVFMYGKCGCLVDAE 134

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
            +F  +P       N  I A   +  P  +L+++ +M   G+ +D  +FP ILKA    +
Sbjct: 135 KLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLK 194

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR-DIVPWSVMI 190
               G +VHGL  K G+ S  FV   +VGMY  C  +  AR +FD+M  + D+V W+ MI
Sbjct: 195 DRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMI 254

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
             Y  NG   E L LF EM+ +++ P+       L AC  +  +  G  +H  ++ ++  
Sbjct: 255 SAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYY 314

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
           ++  + + LI MYA                               R G++ +A  IF  M
Sbjct: 315 INVFVANALIAMYA-------------------------------RFGKMGEAANIFYNM 343

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
            + D I W++M+SG+ +N    EAL+ ++EM+  G KPD V ++S+I+A A  G      
Sbjct: 344 DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGM 403

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
           +IH Y  KN    DL+V N+++DMYAK  S++    +F++M  ++V+SWT++I   A +G
Sbjct: 404 QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG 463

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
               AL  F +++ E ID + +    +L ACS   L+   +EI + +  +  +       
Sbjct: 464 SHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK-GLSDLVLQN 522

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
           G +VD++G    +  A  + E + F  +VV W S M +C VH
Sbjct: 523 G-IVDVYGECGNVDYAARMFELIEF-KDVVSWTS-MISCYVH 561



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/438 (28%), Positives = 204/438 (46%), Gaps = 39/438 (8%)

Query: 119 SFPPILKAIARAEGLLEGMQVHG-LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
           ++  +L+     + L EG QVH  + T     +  F+ T LV MYG CG ++DA  +FD 
Sbjct: 80  AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 139

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           M ++ I  W+ MI  Y  NG     L L+ EM++S +  D      IL AC    +  YG
Sbjct: 140 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYG 199

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS-TAMVSGYSR 296
             VH   I         + ++++ MY  C  ++ A+ LFD++  K  VVS  +M+S YS 
Sbjct: 200 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 259

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
            GQ                                 EAL+LF EMQ   + P+  T ++ 
Sbjct: 260 NGQ-------------------------------SIEALRLFGEMQKASLAPNTYTFVAA 288

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           + AC     + Q   IH  + K+++  ++ V NA+I MYA+ G +  A  +F  M   + 
Sbjct: 289 LQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDT 348

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA- 475
           ISW SM++ F  +G    AL F+++M+D    P+ V  I ++ A + +G    G +I A 
Sbjct: 349 ISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAY 408

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           +M N   +    +    +VD++ +   ++    + + MP   +VV W +++A    +G  
Sbjct: 409 AMKN--GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVVSWTTIIAGHAQNGSH 465

Query: 536 E--LAEFAAKQLLQLDPD 551
              L  F   QL  +D D
Sbjct: 466 SRALELFREVQLEGIDLD 483



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 154/335 (45%), Gaps = 36/335 (10%)

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           N  F  + +LF     S    DE   S +L  C     LS G+ VH  +I +N       
Sbjct: 57  NEAFQSLTDLFANQSPSQFSLDE-AYSSVLELCGSKKALSEGQQVHAHMITSN------- 108

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
                              LF+ V L     ST +V  Y + G + DA  +FD M  K +
Sbjct: 109 ------------------ALFNSVFL-----STRLVFMYGKCGCLVDAEKLFDGMPHKTI 145

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
             W+AMI  Y  N  P  +L+L+ EM+V G+  D  T   ++ AC  L        +H  
Sbjct: 146 FTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGL 205

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARN 434
             K  +   + V N+I+ MY KC  L  AR++F+RM  + +V+SW SMI+A++ +G +  
Sbjct: 206 AIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIE 265

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS-MTNEYNIPPKYEHYGCM 493
           AL  F +M+  S+ PN  TF+  L AC  +  + +G  I A+ + + Y I     +   +
Sbjct: 266 ALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVAN--AL 323

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           + ++ R   + EA  +   M    + + W S+++ 
Sbjct: 324 IAMYARFGKMGEAANIFYNMD-DWDTISWNSMLSG 357


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 246/603 (40%), Positives = 363/603 (60%), Gaps = 4/603 (0%)

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG--MYGACGKILD-ARLMFDKMSY 180
           +  + R     E  Q+H    K G   D +  T  +   +       L  A+++FD    
Sbjct: 18  MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
            D   W++MI G+  +   +  L L++ M  S+   +      +L ACS          +
Sbjct: 78  PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQI 137

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H  I       D +  ++LI  YA  G   +A  LFD++   + V   +++ GY +AG++
Sbjct: 138 HAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKM 197

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
           + A  +F +M EK+ I W+ MISGY + +  +EAL+LF+EMQ   ++PD V++ + +SAC
Sbjct: 198 DIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSAC 257

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           A LG L+Q + IH Y++K     D  +   +IDMYAKCG +E A EVF+ +++++V +WT
Sbjct: 258 AQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWT 317

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           ++I+ +A HG  R A+  F +M+   I PN +TF  VL ACS+ GLV+EG+ IF SM  +
Sbjct: 318 ALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERD 377

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
           YN+ P  EHYGC+VDL GRA LL EA   ++ MP  PN VIWG+L+ ACR+H  IEL E 
Sbjct: 378 YNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEE 437

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
             + L+ +DP H G  V  +NI+A DK+W    E R+ MKE+G+ K   CS I +    +
Sbjct: 438 IGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTH 497

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL-WHSEKLA 659
           EFL  DRSH + ++I  K   +  +L+  GYVP++   L+DL D+++RE I+  HSEKLA
Sbjct: 498 EFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLA 557

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           + YGLI +K  + IRI+KNLRVC+DCH   KL+SK+Y R+IV+RDRTRFHH++DG CSC 
Sbjct: 558 ITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCG 617

Query: 720 DYW 722
           DYW
Sbjct: 618 DYW 620



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 123/450 (27%), Positives = 212/450 (47%), Gaps = 68/450 (15%)

Query: 15  TSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIF 74
           T + +  CS    +KQ HA++LK   +   Q+S  +   L SF + +T+   L YA  +F
Sbjct: 17  TMSCLQRCSKQEELKQIHARMLK---TGLMQDSYAITKFL-SFCISSTSSDFLPYAQIVF 72

Query: 75  SQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL 134
                P + + N  IR  S S  P+ +L ++ +ML      + ++FP +LKA +      
Sbjct: 73  DGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFE 132

Query: 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD------------------ 176
           E  Q+H   TKLG+ +D +    L+  Y   G    A L+FD                  
Sbjct: 133 ETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYV 192

Query: 177 -------------KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSK 223
                        KM+ ++ + W+ MI GY Q  +  E L LF EM+ S+VEPD + L+ 
Sbjct: 193 KAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLAN 252

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
            LSAC++ G L  G+ +H ++    + +D+ L   LI MYA CG M+ A  +F  +  K+
Sbjct: 253 ALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKS 312

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           +   TA++SGY+  G                               H +EA+  F EMQ 
Sbjct: 313 VQAWTALISGYAYHG-------------------------------HGREAISKFMEMQK 341

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIIDMYAKCGSLE 402
            G+KP+ +T  +V++AC++ G++++ + I   ++++      +     I+D+  + G L+
Sbjct: 342 MGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLD 401

Query: 403 SAREVFERMR-RRNVISWTSMINAFAIHGD 431
            A+   + M  + N + W +++ A  IH +
Sbjct: 402 EAKRFIQEMPLKPNAVIWGALLKACRIHKN 431


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 262/664 (39%), Positives = 379/664 (57%), Gaps = 44/664 (6%)

Query: 72  SIFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARA 130
           S+F +     S  S N  I   + S     AL  F  M    L  +R +FP  +K+ +  
Sbjct: 40  SMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSL 99

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
             L  G Q+H      G+GSD FV + L+ MY  CG + DAR +FD++  R++V W+ MI
Sbjct: 100 YDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMI 159

Query: 191 DGYFQNG-------LFDEVLNL----FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            GY QN        LF E L +    ++E+    V  D ++L  ++SAC+R    S  E 
Sbjct: 160 SGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTEC 219

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           VH   +                     GC               L V   ++  Y++ G+
Sbjct: 220 VHGLAVKKGFE----------------GC---------------LAVGNTLMDAYAKCGE 248

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG-MKPDKVTMLSVIS 358
           +  +R +FD M E D+  W+++I+ YA+N    EA  LF++M   G ++ + VT+ +V+ 
Sbjct: 249 ISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLL 308

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           ACAH G L   + IH  + K     +L V  +I+DMY KCG +E AR+ F+R++R+NV S
Sbjct: 309 ACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKS 368

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           WT M+  + +HG  + A+  F +M    I PN +TF+ VL ACSHAGL+ EG   F  M 
Sbjct: 369 WTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMK 428

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
            E+++ P  EHY CMVDL GRA  L+EA  L++ M   P+ ++WGSL+ ACR+H  +EL 
Sbjct: 429 CEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELG 488

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
           E +A++L +LDP + G  VLLSNIYA   RW DV  +R  MK  G+LK    S +E    
Sbjct: 489 EISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGR 548

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           V+ FL  D+ H Q ++IYE L+E+  +L+  GY+P++ S L D++ EEK  V+  HSEKL
Sbjct: 549 VHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKL 608

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+ +G+++S   S I+I+KNLR+C DCH  IKL+SK+  REIVIRD  RFHH+KDG+CSC
Sbjct: 609 AVAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSC 668

Query: 719 KDYW 722
            DYW
Sbjct: 669 GDYW 672



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 177/370 (47%), Gaps = 36/370 (9%)

Query: 172 RLMFDK-MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           R MF K +    +  W+ +I  + ++G   + L  F  M+  ++ P+       + +CS 
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
             +L  G+ +H+         D  + S LI MY+ CG ++ A+ LFD++  +N+V  T+M
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSM 158

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           +SGY +  +  +A  +F + +  D            E +        ++E+   G+  D 
Sbjct: 159 ISGYVQNERAREAVFLFKEFLLVD------------ETD--------YDEIVGVGVGVDS 198

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           V +  VISACA + V    + +H    K  F G L V N ++D YAKCG +  +R+VF+ 
Sbjct: 199 VLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDG 258

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDE 469
           M   +V SW S+I  +A +G +  A   F+ M K   +  N VT   VL AC+H+G +  
Sbjct: 259 MEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQI 318

Query: 470 GREI---FASMTNEYNIPPKYEHYGCMVDLF---GRANLLREALELVETMPFAPNVVIWG 523
           G+ I      M  E N+         +VD++   GR  + R+A + ++      NV  W 
Sbjct: 319 GKCIHDQVVKMELEDNLVVGTS----IVDMYCKCGRVEMARKAFDRLKR----KNVKSWT 370

Query: 524 SLMAACRVHG 533
            ++A   +HG
Sbjct: 371 VMVAGYGMHG 380


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/614 (39%), Positives = 381/614 (62%), Gaps = 12/614 (1%)

Query: 117 RFSFPPILKA---IARAEGLLEGMQVHGLGTK---LGFGSDPFVQTGLVGMYGACGKILD 170
           RF  PP  K    I +++ + E +Q+H    +   L     P +   L   Y + GKI  
Sbjct: 23  RFRLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRH 82

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           +  +F +    D+  ++  I+    NGL D+   L+ ++  S + P+E   S +L +CS 
Sbjct: 83  SLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCST 142

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
                 G+ +H  ++   + +D ++ + L+ +YA  G +  A+ +FD++  ++LV STAM
Sbjct: 143 KS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAM 198

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM-KPD 349
           ++ Y++ G VE AR +FD M E+D++ W+ MI GYA++  P +AL LF ++   G  KPD
Sbjct: 199 ITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPD 258

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           ++T+++ +SAC+ +G L+  + IH+++  +    +++V   +IDMY+KCGSLE A  VF 
Sbjct: 259 EITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFN 318

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVD 468
              R+++++W +MI  +A+HG +++AL  FN+M+    + P  +TFIG L AC+HAGLV+
Sbjct: 319 DTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVN 378

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           EG  IF SM  EY I PK EHYGC+V L GRA  L+ A E ++ M    + V+W S++ +
Sbjct: 379 EGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGS 438

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           C++HG+  L +  A+ L+ L+  + G  VLLSNIYA    ++ V ++R  MKE+GI+KE 
Sbjct: 439 CKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEP 498

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
             S IE+ N+V+EF   DR H ++ +IY  L ++   +K  GYVP+ ++ L DLE+ EK 
Sbjct: 499 GISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKE 558

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
           + +  HSE+LA+ YGLIS+K  S ++I KNLRVC DCH   KL+SK+  R+IV+RDR RF
Sbjct: 559 QSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRF 618

Query: 709 HHYKDGVCSCKDYW 722
           HH+ DG CSC D+W
Sbjct: 619 HHFTDGSCSCGDFW 632



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 213/449 (47%), Gaps = 76/449 (16%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           I    S+  + Q HA IL+ +   H +  +L   L  +++    +   + ++L++F Q  
Sbjct: 36  IDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYA----SHGKIRHSLALFHQTI 91

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P   +    I   S +     A  +++++L+  +  + F+F  +LK+ +   G L    
Sbjct: 92  DPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGKL---- 147

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACG------KILD---------------------- 170
           +H    K G G DP+V TGLV +Y   G      K+ D                      
Sbjct: 148 IHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGN 207

Query: 171 ---ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE-MKMSNVEPDEMVLSKILS 226
              AR +FD M  RDIV W+VMIDGY Q+G  ++ L LF++ +     +PDE+ +   LS
Sbjct: 208 VEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALS 267

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV 286
           ACS+ G L  G  +H F+  + + L+  + + LI MY+ CG ++ A  +F+    K++V 
Sbjct: 268 ACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVA 327

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ-VCG 345
             AM++GY+  G                               + Q+AL+LFNEMQ + G
Sbjct: 328 WNAMIAGYAMHG-------------------------------YSQDALRLFNEMQGITG 356

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLES 403
           ++P  +T +  + ACAH G++++  RI   + +  +G   ++ +   ++ +  + G L+ 
Sbjct: 357 LQPTDITFIGTLQACAHAGLVNEGIRIFESMGQE-YGIKPKIEHYGCLVSLLGRAGQLKR 415

Query: 404 AREVFERMRR-RNVISWTSMINAFAIHGD 431
           A E  + M    + + W+S++ +  +HGD
Sbjct: 416 AYETIKNMNMDADSVLWSSVLGSCKLHGD 444


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/561 (42%), Positives = 348/561 (62%), Gaps = 4/561 (0%)

Query: 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221
           Y + G++  +  +F +     +  W+ +I G+   GL ++ LN + +M    VEP+    
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           S IL  C     +  G+A+H   +      D ++++ L+ +YA  G +  A+ LFD +  
Sbjct: 79  SSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 134

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           K+LV  TAM++ Y++ G+++ AR++FD M E+D +CW+ MI GY +N  P EAL LF  M
Sbjct: 135 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 194

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
                KP++VT+LSV+SAC  LG L+  + +H YI+ N    ++ V  A++DMY+KCGSL
Sbjct: 195 LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSL 254

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
           E AR VF+++  ++V++W SMI  +A+ G ++ AL  F  M    + P  +TFIG+L AC
Sbjct: 255 EDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSAC 314

Query: 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI 521
            H+G V EG +IF  M +EY I PK EHYGCMV+L GRA  + +A ELV+ M   P+ V+
Sbjct: 315 GHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVL 374

Query: 522 WGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581
           WG+L+ ACR+HG+I L E   + L+  +  + G  +LLSNIYA    W  V  LR  MK+
Sbjct: 375 WGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKD 434

Query: 582 RGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVD 641
            G+ KE  CS IE+NN+V+EFL    +H +  +IY  L E+   LK  GY P     L D
Sbjct: 435 SGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHD 494

Query: 642 LEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIV 701
           + + EK   +  HSEKLA+ +GLI+++  + I+IVKNLRVC DCH   KL+SK+  R+IV
Sbjct: 495 IGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIV 554

Query: 702 IRDRTRFHHYKDGVCSCKDYW 722
           +RDR RFHH+ +G CSC DYW
Sbjct: 555 VRDRNRFHHFVNGSCSCGDYW 575



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 188/398 (47%), Gaps = 70/398 (17%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L Y++++F +   P        I   +     + AL  + +ML +G+  + F+F  ILK 
Sbjct: 25  LDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKL 84

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA--------------- 171
                 +  G  +H    KLGF SD +V+TGL+ +Y   G ++ A               
Sbjct: 85  CP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSL 140

Query: 172 ----------------RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
                           R++FD M  RD V W+VMIDGY QNG+ +E L LF  M  +  +
Sbjct: 141 TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAK 200

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           P+E+ +  +LSAC + G L  G  VH +I +N +  + H+ + L+ MY+ CG ++ A+ +
Sbjct: 201 PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLV 260

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           FDK+  K++V   +M+ GY+  G                                 QEAL
Sbjct: 261 FDKIDDKDVVAWNSMIVGYAMXG-------------------------------FSQEAL 289

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIID 393
           +LF  M   G+ P  +T + ++SAC H G + +   I   + K+ +G + ++ +   +++
Sbjct: 290 QLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKM-KDEYGIEPKIEHYGCMVN 348

Query: 394 MYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHG 430
           +  + G +E A E+ + M    + + W +++ A  +HG
Sbjct: 349 LLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHG 386


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 249/634 (39%), Positives = 360/634 (56%), Gaps = 36/634 (5%)

Query: 90  RAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR-AEGLLEGMQVHGLGTKLGF 148
           RA++ S    HAL+V   + N        + P  LK+ +R    L  G Q+H    KL  
Sbjct: 47  RALTSSALHLHALRVHCLLPNP----SHLTIPIALKSASRLPHPLRAGEQLHARSLKLPS 102

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
            ++P V T L+ +Y  CG +  A+ +FD+M +   VPW+ +I  Y   G   E +++   
Sbjct: 103 HTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARN 162

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
              + + PD     ++L+AC+R  +L+ GE V        VA                  
Sbjct: 163 AFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVA------------------ 204

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
                        +++ V+TA V  Y + G++  AR +FD+M  KD + W AM+ GYA N
Sbjct: 205 -------------QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASN 251

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
            HP+EAL LF  MQ  GMKPD   +   +SAC  LG LD  ++    +D + F  +  + 
Sbjct: 252 GHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 311

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
            A+IDMYAKCGS   A  VF++MR++++I W +MI    + G  + A     +M+   + 
Sbjct: 312 TALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVK 371

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
            N  TFIG+L +C+H GL+ +GR  F +MT  Y+I P+ EHYGCMVDL  RA LL+EA +
Sbjct: 372 LNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQ 431

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
           LV+ MP   N VI G+L+  C++H   ELAE   KQL+ L+P + G  V+LSNIY+   R
Sbjct: 432 LVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGR 491

Query: 569 WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
           W+D  +LR  MK +G+ K  ACS +E   +V+EF   D+SH  +DQIY+KL+E+  E+K 
Sbjct: 492 WEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKT 551

Query: 629 AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
            GY P     + D+EDEEK   ++ HSEKLA+ + L+ +     IR+ KNLRVC DCH  
Sbjct: 552 MGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTA 611

Query: 689 IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           IKLVS++  REI++RD  RFH ++DG CSC DYW
Sbjct: 612 IKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 182/419 (43%), Gaps = 58/419 (13%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHM----KQTHAQILKL-SHSHHSQNSLLLKLLLTSFS 58
           L  P+  LT+P   A+ S S L H     +Q HA+ LKL SH+    N  +L  LL+ ++
Sbjct: 65  LPNPSH-LTIPI--ALKSASRLPHPLRAGEQLHARSLKLPSHT----NPHVLTSLLSLYA 117

Query: 59  LPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
                   L+ A  +F ++P P +      I A   +   + A+ V       G+  D F
Sbjct: 118 ----KCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSF 173

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +   +L A AR   L  G  V     + G     FV T  V +Y  CG++  AR +FDKM
Sbjct: 174 TAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKM 233

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
            ++D V W  M+ GY  NG   E L+LF  M+   ++PD   ++  LSAC+R G L  G 
Sbjct: 234 RHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGR 293

Query: 239 AVHEFI-----IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
                +     +DN V     L + LI MYA CG    A  +F ++  K+++V  AM+ G
Sbjct: 294 QAIRMVDWDEFLDNPV-----LGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILG 348

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
               G                               H + A  L  +M+  G+K +  T 
Sbjct: 349 LGMTG-------------------------------HEKIAFALVGQMEKSGVKLNDNTF 377

Query: 354 LSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           + ++ +C H G++   +R  H           +     ++D+ ++ G L+ A ++ + M
Sbjct: 378 IGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDM 436


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 255/693 (36%), Positives = 384/693 (55%), Gaps = 41/693 (5%)

Query: 70  ALSIFSQIPA--PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
           A  +F + P     + + N  I   S ++    A+ +F KM +EG   D F+F  +L  +
Sbjct: 99  ARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGL 158

Query: 128 AR-AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK----ILDARLMFDKMSYRD 182
           A  A+   + +Q H    K G G    V   LV +Y  C      +  AR +FD++  +D
Sbjct: 159 ALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKD 218

Query: 183 IVPWSVMIDGYFQNGLFD--------------------------------EVLNLFEEMK 210
              W+ M+ GY +NG FD                                E L +   M 
Sbjct: 219 ERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMV 278

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
            S +E DE     ++ AC+ AG L  G+ VH +++        H  ++L+++Y  CG  D
Sbjct: 279 SSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFD 337

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            A+ +F+K+  K+LV   A++SGY  +G + +A+LIF +M EK+++ W  MISG AEN  
Sbjct: 338 EARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGF 397

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
            +E LKLF+ M+  G +P        I +CA LG     Q+ H  + K  F   L   NA
Sbjct: 398 GEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNA 457

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           +I MYAKCG +E AR+VF  M   + +SW ++I A   HG    A+  + +M  + I P+
Sbjct: 458 LITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPD 517

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
            +T + VL ACSHAGLVD+GR+ F SM   Y IPP  +HY  ++DL  R+    +A  ++
Sbjct: 518 RITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVI 577

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
           E++PF P   IW +L++ CRVHG +EL   AA +L  L P+HDG  +LLSN++A   +W+
Sbjct: 578 ESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWE 637

Query: 571 DVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAG 630
           +V  +RK M++RG+ KE ACS IEM  +V+ FL  D SH + + +Y  L ++  E++  G
Sbjct: 638 EVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLG 697

Query: 631 YVPDIHSALVDLE-DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFI 689
           YVPD    L D+E D  K +++  HSEK+A+ +GL+     + IRI KNLR C DCHNF 
Sbjct: 698 YVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFF 757

Query: 690 KLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + +S V  R+I++RDR RFHH+++G CSC ++W
Sbjct: 758 RFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/451 (25%), Positives = 207/451 (45%), Gaps = 44/451 (9%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDK--MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
           D   +T +V  Y A G I  AR +F+K  +  RD V ++ MI G+  N      +NLF +
Sbjct: 79  DKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCK 138

Query: 209 MKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           MK    +PD    + +L+  +  A +       H   + +       + + L+++Y+ C 
Sbjct: 139 MKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCA 198

Query: 268 C----MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK-DLICWSAMI 322
                +  A+ +FD++L K+    T M++GY + G  +    + + M +   L+ ++AMI
Sbjct: 199 SSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMI 258

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
           SGY      QEAL++   M   G++ D+ T  SVI ACA  G+L   +++H Y+ +    
Sbjct: 259 SGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-D 317

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFER-------------------------------M 411
                +N+++ +Y KCG  + AR +FE+                               M
Sbjct: 318 FSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEM 377

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471
           + +N++SW  MI+  A +G     L  F+ MK E  +P    F G + +C+  G    G+
Sbjct: 378 KEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQ 437

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
           +  A +  +            ++ ++ +  ++ EA ++  TMP   + V W +L+AA   
Sbjct: 438 QYHAQLL-KIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMP-CLDSVSWNALIAALGQ 495

Query: 532 HGEIELAEFAAKQLLQ--LDPDHDGALVLLS 560
           HG    A    +++L+  + PD    L +L+
Sbjct: 496 HGHGAEAVDVYEEMLKKGIRPDRITLLTVLT 526



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 175/356 (49%), Gaps = 44/356 (12%)

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
           R  +L    AVH  II       AH+ + LI +Y     ++ A+ LFD++   + +  T 
Sbjct: 26  RRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTT 85

Query: 290 MVSGYSRAGQVEDARLIFDQ--MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           MVSGY  +G +  AR +F++  +  +D + ++AMI+G++ NN    A+ LF +M+  G K
Sbjct: 86  MVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFK 145

Query: 348 PDKVTMLSVISACAHLGVLDQAQ--RIHLYIDKNAFGGDLRVNNAIIDMYAKCGS----L 401
           PD  T  SV++  A L   D+ Q  + H    K+  G    V+NA++ +Y+KC S    L
Sbjct: 146 PDNFTFASVLAGLA-LVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLL 204

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGD------------------ARNALI------ 437
            SAR+VF+ +  ++  SWT+M+  +  +G                   A NA+I      
Sbjct: 205 HSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNR 264

Query: 438 -FFN-------KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
            F+        +M    I+ +  T+  V+ AC+ AGL+  G+++ A +    +    +++
Sbjct: 265 GFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN 324

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
              +V L+ +     EA  + E MP A ++V W +L++     G I  A+   K++
Sbjct: 325 --SLVSLYYKCGKFDEARAIFEKMP-AKDLVSWNALLSGYVSSGHIGEAKLIFKEM 377


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 247/713 (34%), Positives = 397/713 (55%), Gaps = 38/713 (5%)

Query: 10  PLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYY 69
           P     + A+++CS+  H+   HA  +   +  +      L  L   FS        + Y
Sbjct: 109 PDNFTYAFAVAACSNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFS-------RVVY 161

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F  +P   + + N  I  +  +     ++++F +M+ +G+ +D  +   +L A A 
Sbjct: 162 ARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAE 221

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            + L  GM +  L  K+GFG   +V TGL+ +Y  CG +  ARL+F +++  D++ ++ M
Sbjct: 222 LQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAM 281

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G+  NG  +  + LF E+  S        +  ++   S  G+L    ++H F + + +
Sbjct: 282 ISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGI 341

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            L                               N  VSTA  + Y++  +++ AR +FD+
Sbjct: 342 IL-------------------------------NPTVSTAFTAIYNKLNEIDLARHLFDE 370

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
             EK ++ W+AMISGY +N   + A+ LF EM      P+ VT+ +++SACA LG L   
Sbjct: 371 SPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFG 430

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + +H  I       ++ V+ A++DMYAKCG++  A ++F+ M  +N ++W +MI  + +H
Sbjct: 431 KWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLH 490

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G    AL  +N+M     +P+ VTF+ VLYACSHAGLV EG EIF +M N+Y I P  EH
Sbjct: 491 GYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEH 550

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           Y CMVD+ GR+  L +ALE ++ MP  P   +WG+L+ AC +H + ++A  A+++L +LD
Sbjct: 551 YACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELD 610

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P   G  VLLSNIY+ ++ +     +R+ +K+R + K   C+ IE+N   + F++ DRSH
Sbjct: 611 PGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSH 670

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
                IY KL ++  +++  GY  +   AL D+E+EEK   +  HSEKLA+ +GLI+++ 
Sbjct: 671 SHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEP 730

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + IRI+KNLRVC DCH   K +SK+  R IV+RD  RFHH+KDG+CSC DYW
Sbjct: 731 GNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/660 (36%), Positives = 392/660 (59%), Gaps = 6/660 (0%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L  AL +F +IP P  R     I   +    PK A+ ++  +L+  +  D+F    + KA
Sbjct: 27  LKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKA 86

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            A +  L+   ++H    + GF  D  +   L+ M+G C  +  AR +FD M  +D+V W
Sbjct: 87  CAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSW 146

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + M   Y   G+  + + LF EM ++ +  + + +S IL AC  A  +  G  VH FI+ 
Sbjct: 147 TSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPAC--ADYIKLGREVHGFILR 204

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
           N +  + ++ S L+ MYA+   +  A+ +FD +  +++V    M++ Y    + E    +
Sbjct: 205 NEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGL 264

Query: 307 FDQM----VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           F QM    ++ +   W+A ISG  +N   + AL +  +MQ  G+KP+++T++S +  C +
Sbjct: 265 FHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTN 324

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           L  L   + IH Y+ ++ F  D+ +  A++ +YAKCG LE +R VF  M R++V++W +M
Sbjct: 325 LESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTM 384

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I A ++HG    +LI FNKM D  ++PN VTFIGVL  CSH+ L DEG  +F SM++E++
Sbjct: 385 IMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHS 444

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           I P  +HY CMVD+  RA  L EA + +  MP  P    WG+L+ ACRV+  +EL   AA
Sbjct: 445 ITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNVELGTLAA 504

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
            QL +++PD+ G  VLLSNI    K+W +  E+RK M+++G+ K    S +++ N+VY F
Sbjct: 505 SQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKNKVYSF 564

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
           +T D+S++Q D IY  L+E+  +++  GY P+    L +++ E++ E +  HSE+LA+ +
Sbjct: 565 VTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQEQREETLCSHSERLAVAF 624

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           G+++S   + +R+ KNLR+C DCHN IKL++K+   +I++RD  RFHH++DG C+C D+W
Sbjct: 625 GILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRDGYCTCNDFW 684



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 187/404 (46%), Gaps = 70/404 (17%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           G +  A  +FDK+   D+  W+++I G+ Q+G   + ++++  +   NV PD+ VL  + 
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVA 84

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
            AC+ +G+L   + +H+  I      D  L + LI M+  C  ++ A+ +FD +++K++V
Sbjct: 85  KACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVV 144

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
             T+M   Y   G                 +C              ++ + LF EM + G
Sbjct: 145 SWTSMTYCYVNCG-----------------MC--------------RQGILLFREMGLNG 173

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
           ++ + +T+ S++ ACA    +   + +H +I +N   G++ V++A+++MYA    L+ AR
Sbjct: 174 IRANSLTVSSILPACADY--IKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQAR 231

Query: 406 EVFERMRRRNVISWTSMINAF------------------------------AIHGDARN- 434
            VF+ M  R+++SW  M+ A+                              AI G  +N 
Sbjct: 232 LVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNG 291

Query: 435 ----ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
               AL    KM+D  I PN +T +  L  C++   +  G+EI   +   + I       
Sbjct: 292 QHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFI-EDVTIT 350

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
             +V L+ +   L  +  +  TMP   +VV W +++ A  +HG+
Sbjct: 351 TALVLLYAKCGDLELSRHVFNTMP-RKDVVAWNTMIMANSMHGK 393



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 132/241 (54%), Gaps = 6/241 (2%)

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
           +G ++ A  +FD++ E DL  W+ +ISG+ ++  P++A+ +++ +    ++PDK  +LSV
Sbjct: 24  SGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSV 83

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
             ACA  G L  A++IH    +  F  DL + NA+IDM+ KC  +  AR VF+ M  ++V
Sbjct: 84  AKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDV 143

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           +SWTSM   +   G  R  ++ F +M    I  N +T   +L AC  A  +  GRE+   
Sbjct: 144 VSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPAC--ADYIKLGREVHGF 201

Query: 477 -MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
            + NE  +         +V+++  +  L++A  + ++M +  ++V W  ++ A  ++ E 
Sbjct: 202 ILRNE--MEGNVYVSSALVNMYASSLGLKQARLVFDSM-YHRDIVSWNVMLTAYFLNKEY 258

Query: 536 E 536
           E
Sbjct: 259 E 259


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 247/653 (37%), Positives = 383/653 (58%), Gaps = 32/653 (4%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F + P       N  I A S       AL ++ +M +EG+  D  ++  +LKA  R
Sbjct: 58  ARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTR 117

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           +  L  G +        G+G D FV   ++ +Y  CGK+ +A  +FDKM  RD+V W+ M
Sbjct: 118 SLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTM 177

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G  QNG   E ++++ +M    VE D +V+  ++ AC+  G+   G ++H ++I  ++
Sbjct: 178 ITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDI 237

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            +D  +Q++L+ M                               Y++ G +E A  +F +
Sbjct: 238 IMDVIVQTSLVDM-------------------------------YAKNGHLELASCVFRR 266

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M+ K++I WSA+ISG+A+N     AL+L  +MQ  G KPD V+++SV+ AC+ +G L   
Sbjct: 267 MLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLG 326

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + +H YI +     D   + A+IDMY+KCGSL  AR VF+++  R+ ISW ++I ++ IH
Sbjct: 327 KSVHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIH 385

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G    AL  F +M++ ++ P+  TF  +L A SH+GLV++GR  F+ M NEY I P  +H
Sbjct: 386 GSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKH 445

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           Y CMVDL  RA  + EA EL+E+M   P + IW +L++ C  HG+  + E AAK++L+L+
Sbjct: 446 YACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELN 505

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           PD  G   L+SN +A  +RW +V E+RK MK+ G+ K    S +E+N +++ FL  D+SH
Sbjct: 506 PDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSH 565

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
            Q ++I + L ++  E+K  GYVP     L +LE+E K  ++  HSE+LA+ +GL+++  
Sbjct: 566 HQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGP 625

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + + I KNLRVC DCH   K +SK+  REIV+RD  RFHH+KDGVCSC DYW
Sbjct: 626 GTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 244/598 (40%), Positives = 359/598 (60%), Gaps = 40/598 (6%)

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
            ++P ++KA   +     G+ VH    K GF  D ++   L+ +Y     +  A+ +F  
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
            S RD+V W+ MIDGY + G          EM  + +  D MV   ++S           
Sbjct: 61  CSDRDVVSWNAMIDGYVKRG----------EMGHTRMVFDRMVCRDVIS----------- 99

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
                              +T+I  YA  G +D AK LFD++  +NLV   +M+SG+ + 
Sbjct: 100 ------------------WNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKC 141

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           G VE+A  +F +M  +D++ W++M++ YA+   P EAL LF++M+  G+KP + T++S++
Sbjct: 142 GNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 201

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
           SACAHLG LD+   +H YI+ N    +  V  A++DMYAKCG +  A +VF  M  ++V+
Sbjct: 202 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 261

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
           +W ++I   AIHG  + A   F +MK+ S++PN +TF+ +L ACSHAG+VDEG+++   M
Sbjct: 262 AWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 321

Query: 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537
           ++ Y I PK EHY C++DL  RA LL EA+EL+ TMP  PN    G+L+  CR+HG  EL
Sbjct: 322 SSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFEL 381

Query: 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNN 597
            E   K+L+ L P H G  +LLSNIYA  K+W D  ++R  MK  GI K    S IE+  
Sbjct: 382 GEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKG 441

Query: 598 EVYEFLTADRSHKQTDQIYEKLNEVISELKPA-GYVPDIHSALVDLEDEEKREVILWHSE 656
            V+ F+  D SH ++++IY+KLNE+ + LK A GY  D  + L+D+E+E+K   +  HSE
Sbjct: 442 MVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSE 501

Query: 657 KLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDG 714
           KLA+ YGL+       IRIVKNLRVC DCH+  KL+SKVY REI++RDR RFHH++DG
Sbjct: 502 KLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDG 559



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 34/350 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +FS++P       N  +   +   +P  AL +F +M   G+     +   +L A A 
Sbjct: 147 AFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 206

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L +G+ +H          +  V T LV MY  CGKI  A  +F+ M  +D++ W+ +
Sbjct: 207 LGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTI 266

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G   +G   E   LF+EMK ++VEP+++    +LSACS AG +  G+ + +  + ++ 
Sbjct: 267 IAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLD-CMSSSY 325

Query: 250 ALDAHLQ--STLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLI 306
            ++  ++    +I + A  G ++ A  L   + ++ N     A++ G    G  E     
Sbjct: 326 GIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFE----- 380

Query: 307 FDQMVEKDLICWSAMISG--------YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
             +MV K LI      SG        YA      +A K+ N M+V G+   KV  +SVI 
Sbjct: 381 LGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGIS--KVPGVSVIE 438

Query: 359 ACAHL--------------GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
               +               + D+   IH  + K+A G      N ++DM
Sbjct: 439 LKGMVHRFVAGDWSHPESNKIYDKLNEIHTRL-KSAIGYSADTGNVLLDM 487


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 249/618 (40%), Positives = 367/618 (59%), Gaps = 33/618 (5%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGA--CGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           QVH +  + G   D +V   LV  Y       +  A  +F+ +   ++  ++++I G  Q
Sbjct: 48  QVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQ 107

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           N    + +  + +M +++  P++     +  AC+ A     G  VH  +I   ++ D H+
Sbjct: 108 NNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHI 167

Query: 256 QSTLITMYAN-------------------------------CGCMDMAKGLFDKVLLKNL 284
           +S  I MY +                               CG ++ AK LF  +  KN+
Sbjct: 168 RSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNV 227

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
                MVSG ++ G +E+AR +F++M EK+ I WSAMI GY +  + +EAL++FN MQ  
Sbjct: 228 GSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQRE 287

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
            ++P K  + SV++ACA+LG LDQ + IH Y++ N+   D  +  A++DMYAKCG L+ A
Sbjct: 288 EIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMA 347

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
            +VFE+M ++ V +W +MI    +HG A +A+  F KM+ +   PNG+T +GVL AC+H+
Sbjct: 348 WDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHS 407

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGS 524
           G+VDEG  IF SM   Y I P  EHYGC+VDL GRA LL EA E++ +MP  P+  +WG+
Sbjct: 408 GMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGA 467

Query: 525 LMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584
           L+ ACR HG++EL E   K LL+L+P + G   LLSNIYA+  RW DV  +RK MKERG+
Sbjct: 468 LLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGV 527

Query: 585 LKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLED 644
                 S I+ +  V+EF   D SH Q   IY  L  +I  LK  G+ P+    L D+E+
Sbjct: 528 KTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEE 587

Query: 645 EEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRD 704
           EEK   + +HSEKLA+ +GLI++K  + I +VKNLR+CEDCH+  KL+S+VY REI++RD
Sbjct: 588 EEKEAELQYHSEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRD 647

Query: 705 RTRFHHYKDGVCSCKDYW 722
           R R+HH+K G CSCKD+W
Sbjct: 648 RARYHHFKTGTCSCKDFW 665



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 132/495 (26%), Positives = 219/495 (44%), Gaps = 106/495 (21%)

Query: 2   STLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           S LSQ T    L T     S +SL H+KQ HA  L+   + H Q+  +   L+  ++ P 
Sbjct: 24  SQLSQKTILDLLNTK----SSTSLHHLKQVHAVALR---TGHFQDHYVSGTLVKCYANPH 76

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
              S+L +AL +F  +P P   V N  I+    ++ P  A+  + KM+      ++F++P
Sbjct: 77  F--SNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYP 134

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA----------------- 164
            + KA   AE   EG+QVH    K G   D  +++  + MYG+                 
Sbjct: 135 TLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNS 194

Query: 165 --------------CGKILDARLMFDKMSYRDIVPWSV---------------------- 188
                         CG++  A+ +F  M  +++  W+V                      
Sbjct: 195 DVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMK 254

Query: 189 ---------MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
                    MIDGY + G + E L +F  M+   + P + VLS +L+AC+  G L  G  
Sbjct: 255 EKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRW 314

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H ++ +N+ + DA L + L+ MYA CG +DMA  +F+K+  K +    AM+ G    G+
Sbjct: 315 IHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGR 374

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
            ED                               A++LF +MQ    +P+ +T+L V+SA
Sbjct: 375 AED-------------------------------AIELFFKMQKQKFRPNGITLLGVLSA 403

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGD--LRVNNAIIDMYAKCGSLESAREVFERM-RRRNV 416
           CAH G++D+  RI   +++  +G +  +     ++D+  + G L  A EV   M    + 
Sbjct: 404 CAHSGMVDEGLRIFNSMEE-VYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSA 462

Query: 417 ISWTSMINAFAIHGD 431
             W +++ A   HGD
Sbjct: 463 AVWGALLGACRKHGD 477


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 272/718 (37%), Positives = 400/718 (55%), Gaps = 81/718 (11%)

Query: 8   TKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSL 67
           T+PL L   + ++ C SLT  KQ HA +LKL     S   +  KLL        +   SL
Sbjct: 4   TEPLCL---SLLNICKSLTTFKQIHANVLKLGLE--SDPFIAGKLL---HHCAISLSDSL 55

Query: 68  YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKA 126
            YA  +F   P P   + N  IR +  S RP+ +L  F++M     +  D FSF  I+KA
Sbjct: 56  DYACRLFRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKA 115

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            A    +  G+Q+H      G  +  FV T L+ M                         
Sbjct: 116 AANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISM------------------------- 150

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
                 Y + G       +F+EM     EP+ +  + +++AC R G++  G         
Sbjct: 151 ------YGECGFVGFARKVFDEMP----EPNAIAWNAMVTACCRGGDMKGG--------- 191

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
                                     + LFD + ++NL+    M++GY++AG++E AR +
Sbjct: 192 --------------------------RELFDLMPVRNLMSWNVMLAGYTKAGELELAREM 225

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F +M  KD + WS MI G+A N + +EA   F E+Q  GM+P++ ++  V+SACA  G L
Sbjct: 226 FLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGAL 285

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER-MRRRNVISWTSMINA 425
           +  + +H +I+K+     + VNNA++D Y+KCG++  A+ VFER M  RN++SWTSM+ A
Sbjct: 286 EFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAA 345

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
            A+HG    A+  F+KM++  I P+ + FI +LYACSHAGLV++G E F  M   YNI P
Sbjct: 346 LAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEP 405

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
             EHYGCMVDL+GRA  L++A E V  MP     +IW +L+ AC +HG+++LAE   ++L
Sbjct: 406 SIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERL 465

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
            +LDP++    VLLSN YA   +W+D   +R+SM E+ I K    S IE++  +Y FL  
Sbjct: 466 SELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAG 525

Query: 606 DRSHKQTDQIYEKLNEVISELK-PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            + +K T++ Y+KL E+I  L+   GYVP+I   L D+E+EEK   +  HSEKLA+ +G+
Sbjct: 526 TKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLAVAFGI 585

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
               K   IRIVKNLR+C DCH  +KL+S++Y  EIV+RDR+RFH +KDG CSC+DYW
Sbjct: 586 ARLCKGRTIRIVKNLRICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 249/634 (39%), Positives = 360/634 (56%), Gaps = 36/634 (5%)

Query: 90   RAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR-AEGLLEGMQVHGLGTKLGF 148
            RA++ S    HAL+V   + N        + P  LK+ +R    L  G Q+H    KL  
Sbjct: 502  RALTSSALHLHALRVHCLLPNP----SHLTIPIALKSASRLPHPLRAGEQLHARSLKLPS 557

Query: 149  GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
             ++P V T L+ +Y  CG +  A+ +FD+M +   VPW+ +I  Y   G   E +++   
Sbjct: 558  HTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARN 617

Query: 209  MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
               + + PD     ++L+AC+R  +L+ GE V        VA                  
Sbjct: 618  AFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVA------------------ 659

Query: 269  MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
                         +++ V+TA V  Y + G++  AR +FD+M  KD + W AM+ GYA N
Sbjct: 660  -------------QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASN 706

Query: 329  NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
             HP+EAL LF  MQ  GMKPD   +   +SAC  LG LD  ++    +D + F  +  + 
Sbjct: 707  GHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 766

Query: 389  NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
             A+IDMYAKCGS   A  VF++MR++++I W +MI    + G  + A     +M+   + 
Sbjct: 767  TALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVK 826

Query: 449  PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
             N  TFIG+L +C+H GL+ +GR  F +MT  Y+I P+ EHYGCMVDL  RA LL+EA +
Sbjct: 827  LNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQ 886

Query: 509  LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
            LV+ MP   N VI G+L+  C++H   ELAE   KQL+ L+P + G  V+LSNIY+   R
Sbjct: 887  LVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGR 946

Query: 569  WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
            W+D  +LR  MK +G+ K  ACS +E   +V+EF   D+SH  +DQIY+KL+E+  E+K 
Sbjct: 947  WEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKT 1006

Query: 629  AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
             GY P     + D+EDEEK   ++ HSEKLA+ + L+ +     IR+ KNLRVC DCH  
Sbjct: 1007 MGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTA 1066

Query: 689  IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            IKLVS++  REI++RD  RFH ++DG CSC DYW
Sbjct: 1067 IKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 182/419 (43%), Gaps = 58/419 (13%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHM----KQTHAQILKL-SHSHHSQNSLLLKLLLTSFS 58
           L  P+  LT+P   A+ S S L H     +Q HA+ LKL SH+    N  +L  LL+ ++
Sbjct: 520 LPNPSH-LTIPI--ALKSASRLPHPLRAGEQLHARSLKLPSHT----NPHVLTSLLSLYA 572

Query: 59  LPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
                   L+ A  +F ++P P +      I A   +   + A+ V       G+  D F
Sbjct: 573 ----KCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSF 628

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +   +L A AR   L  G  V     + G     FV T  V +Y  CG++  AR +FDKM
Sbjct: 629 TAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKM 688

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
            ++D V W  M+ GY  NG   E L+LF  M+   ++PD   ++  LSAC+R G L  G 
Sbjct: 689 RHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGR 748

Query: 239 AVHEFI-----IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
                +     +DN V     L + LI MYA CG    A  +F ++  K+++V  AM+ G
Sbjct: 749 QAIRMVDWDEFLDNPV-----LGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILG 803

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
               G                               H + A  L  +M+  G+K +  T 
Sbjct: 804 LGMTG-------------------------------HEKIAFALVGQMEKSGVKLNDNTF 832

Query: 354 LSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           + ++ +C H G++   +R  H           +     ++D+ ++ G L+ A ++ + M
Sbjct: 833 IGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDM 891


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 249/634 (39%), Positives = 360/634 (56%), Gaps = 36/634 (5%)

Query: 90   RAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR-AEGLLEGMQVHGLGTKLGF 148
            RA++ S    HAL+V   + N        + P  LK+ +R    L  G Q+H    KL  
Sbjct: 526  RALTSSALHLHALRVHCLLPNP----SHLTIPIALKSASRLPHPLRAGEQLHARSLKLPS 581

Query: 149  GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
             ++P V T L+ +Y  CG +  A+ +FD+M +   VPW+ +I  Y   G   E +++   
Sbjct: 582  HTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARN 641

Query: 209  MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
               + + PD     ++L+AC+R  +L+ GE V        VA                  
Sbjct: 642  AFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVA------------------ 683

Query: 269  MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
                         +++ V+TA V  Y + G++  AR +FD+M  KD + W AM+ GYA N
Sbjct: 684  -------------QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASN 730

Query: 329  NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
             HP+EAL LF  MQ  GMKPD   +   +SAC  LG LD  ++    +D + F  +  + 
Sbjct: 731  GHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 790

Query: 389  NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
             A+IDMYAKCGS   A  VF++MR++++I W +MI    + G  + A     +M+   + 
Sbjct: 791  TALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVK 850

Query: 449  PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
             N  TFIG+L +C+H GL+ +GR  F +MT  Y+I P+ EHYGCMVDL  RA LL+EA +
Sbjct: 851  LNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQ 910

Query: 509  LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
            LV+ MP   N VI G+L+  C++H   ELAE   KQL+ L+P + G  V+LSNIY+   R
Sbjct: 911  LVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGR 970

Query: 569  WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
            W+D  +LR  MK +G+ K  ACS +E   +V+EF   D+SH  +DQIY+KL+E+  E+K 
Sbjct: 971  WEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKT 1030

Query: 629  AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
             GY P     + D+EDEEK   ++ HSEKLA+ + L+ +     IR+ KNLRVC DCH  
Sbjct: 1031 MGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTA 1090

Query: 689  IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            IKLVS++  REI++RD  RFH ++DG CSC DYW
Sbjct: 1091 IKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 180/414 (43%), Gaps = 48/414 (11%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHM----KQTHAQILKL-SHSHHSQNSLLLKLLLTSFS 58
           L  P+  LT+P   A+ S S L H     +Q HA+ LKL SH+    N  +L  LL+ ++
Sbjct: 544 LPNPSH-LTIPI--ALKSASRLPHPLRAGEQLHARSLKLPSHT----NPHVLTSLLSLYA 596

Query: 59  LPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
                   L+ A  +F ++P P +      I A   +   + A+ V       G+  D F
Sbjct: 597 ----KCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSF 652

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +   +L A AR   L  G  V     + G     FV T  V +Y  CG++  AR +FDKM
Sbjct: 653 TAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKM 712

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
            ++D V W  M+ GY  NG   E L+LF  M+   ++PD   ++  LSAC+R G L  G 
Sbjct: 713 RHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGR 772

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
                +  +    +  L + LI MYA CG    A  +F ++  K+++V  AM+ G    G
Sbjct: 773 QAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTG 832

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
                                          H + A  L  +M+  G+K +  T + ++ 
Sbjct: 833 -------------------------------HEKIAFALVGQMEKSGVKLNDNTFIGLLC 861

Query: 359 ACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           +C H G++   +R  H           +     ++D+ ++ G L+ A ++ + M
Sbjct: 862 SCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDM 915


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 256/711 (36%), Positives = 394/711 (55%), Gaps = 43/711 (6%)

Query: 15  TSTAISSCSSLTHMKQTHAQILKLSHSHHSQ--NSLLLKLLLTSFSLPTTTPSSLYYALS 72
            S + SS  S+   +Q H  ILK      +   NSL+      +F L      S   A  
Sbjct: 201 VSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLV------AFYLKNHRVDS---ARK 251

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F ++        N  I     +   +  L VF++ML  G+ ID  +   +    A +  
Sbjct: 252 VFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRL 311

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           +  G  VH  G K  F  +      L+ MY  CG +  A+++F +MS R +V ++ MI G
Sbjct: 312 ISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAG 371

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y + GL  E + LFEEM+   + PD   ++ +L+ C+R   L  G+ VHE+I +N++  D
Sbjct: 372 YAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFD 431

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
                                          + VS A++  Y++ G + +A L+F +M  
Sbjct: 432 -------------------------------IFVSNALMDMYAKCGSMREAELVFSEMRV 460

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCG-MKPDKVTMLSVISACAHLGVLDQAQR 371
           KD+I W+ +I GY++N +  EAL LFN + V     PD+ T+  V+ ACA L   D+ + 
Sbjct: 461 KDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGRE 520

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           IH YI +N +  D  V N+++DMYAKCG+L  AR +F+ +  ++++SWT MI  + +HG 
Sbjct: 521 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGF 580

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
            + A+  FN+M+   I+P+ ++F+ +LYACSH+GLVDEG   F  M +E  I P  EHY 
Sbjct: 581 GKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 640

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           C+VD+  R   L +A   +E MP  P+  IWG+L+  CR+H +++LAE  A+++ +L+P+
Sbjct: 641 CIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPE 700

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
           + G  VL++NIYA+ ++W++V  LRK + +RG+ K   CS IE+   V  F+  D S+ +
Sbjct: 701 NTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPE 760

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS 671
           T++I   L  V + +   GY P    AL+D E+ EK E +  HSEKLA+  G+ISS    
Sbjct: 761 TEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGK 820

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            IR+ KNLRVC DCH   K +SK+  REIV+RD  RFH +KDG CSC+ +W
Sbjct: 821 IIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/444 (27%), Positives = 222/444 (50%), Gaps = 35/444 (7%)

Query: 85  SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
           +N  +R    S   K+A+K  L  ++    ID  +   +L+  A ++ L +G +V     
Sbjct: 64  ANTQLRRFCESGNLKNAVK--LLHVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIR 121

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
             GF  D  + + L  MY  CG + +A  +FD++     + W+++++   ++G F   + 
Sbjct: 122 GNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIG 181

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           LF++M  S VE D    S +  + S   +++ GE +H +I+ +       + ++L+  Y 
Sbjct: 182 LFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFY- 240

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
                           LKN               +V+ AR +FD+M E+D+I W+++I+G
Sbjct: 241 ----------------LKN--------------HRVDSARKVFDEMTERDVISWNSIING 270

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           Y  N   ++ L +F +M   G++ D  T++SV + CA   ++   + +H +  K  F  +
Sbjct: 271 YVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSRE 330

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
            R  N ++DMY+KCG L+SA+ VF  M  R+V+S+TSMI  +A  G A  A+  F +M++
Sbjct: 331 DRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 390

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
           E I P+  T   VL  C+   L+DEG+ +      E ++         ++D++ +   +R
Sbjct: 391 EGISPDVYTVTAVLNCCARNRLLDEGKRVH-EWIKENDMGFDIFVSNALMDMYAKCGSMR 449

Query: 505 EALELVETMPFAPNVVIWGSLMAA 528
           EA ELV +     +++ W +++  
Sbjct: 450 EA-ELVFSEMRVKDIISWNTVIGG 472


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 247/622 (39%), Positives = 370/622 (59%), Gaps = 36/622 (5%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A+ V   M   G+  D  ++  ++K       + EG +VH      G+    F+   L+ 
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY     + +A+++FDKM  R++V W+ MI  Y    L D  + L   M    V P+   
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
            S +L AC R  +L   + +H +I+   +  D  ++S LI +                  
Sbjct: 389 FSSVLRACERLYDL---KQLHSWIMKVGLESDVFVRSALIDV------------------ 427

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                        YS+ G++ +A  +F +M+  D + W+++I+ +A+++   EAL L+  
Sbjct: 428 -------------YSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKS 474

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M+  G   D+ T+ SV+ AC  L +L+  ++ H+++ K  F  DL +NNA++DMY KCGS
Sbjct: 475 MRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK--FDQDLILNNALLDMYCKCGS 532

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           LE A+ +F RM +++VISW++MI   A +G +  AL  F  MK +   PN +T +GVL+A
Sbjct: 533 LEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFA 592

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSHAGLV+EG   F SM N Y I P  EHYGCM+DL GRA  L + ++L+  M   P+VV
Sbjct: 593 CSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVV 652

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
            W +L+ ACR    ++LA +AAK++L+LDP   GA VLLSNIYA  KRW DV E+R++MK
Sbjct: 653 TWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMK 712

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           +RGI KE  CS IE+N +++ F+  D+SH Q D+I  +LN+ I  L  AGYVPD +  L 
Sbjct: 713 KRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQ 772

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           DLE E++ + + +HSEKLA+ +G++S  K+  IRI KNL++C DCH F KL++++  R I
Sbjct: 773 DLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHI 832

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           VIRD  R+HH++DGVCSC DYW
Sbjct: 833 VIRDPIRYHHFQDGVCSCGDYW 854



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 183/393 (46%), Gaps = 41/393 (10%)

Query: 37  KLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYY-ALSIFSQIPAPPSRVSNKFIRAISWS 95
           K  H H   N    K  LT+  +      +L   A  +F ++P          I A S +
Sbjct: 305 KRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNA 364

Query: 96  HRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQ 155
                A+++   M  +G+  + F+F  +L+A  R   L +  Q+H    K+G  SD FV+
Sbjct: 365 QLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACER---LYDLKQLHSWIMKVGLESDVFVR 421

Query: 156 TGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
           + L+ +Y   G++L+A  +F +M   D V W+ +I  + Q+   DE L+L++ M+     
Sbjct: 422 SALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFP 481

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
            D+  L+ +L AC+    L  G   H  ++  +   D  L + L+ MY  CG ++ AK +
Sbjct: 482 ADQSTLTSVLRACTSLSLLELGRQAHVHVLKFD--QDLILNNALLDMYCKCGSLEDAKFI 539

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           F+++  K+++  + M+                               +G A+N    EAL
Sbjct: 540 FNRMAKKDVISWSTMI-------------------------------AGLAQNGFSMEAL 568

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIID 393
            LF  M+V G KP+ +T+L V+ AC+H G++++       ++ N +G D    +   ++D
Sbjct: 569 NLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMN-NLYGIDPGREHYGCMLD 627

Query: 394 MYAKCGSLESAREVFERMR-RRNVISWTSMINA 425
           +  +   L+   ++   M    +V++W ++++A
Sbjct: 628 LLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDA 660



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 10  PLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYY 69
           P     S+ + +C  L  +KQ H+ I+K+       +  +   L+  +S        L  
Sbjct: 384 PNMFTFSSVLRACERLYDLKQLHSWIMKVGLE---SDVFVRSALIDVYS----KMGELLE 436

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           AL +F ++    S V N  I A +       AL ++  M   G   D+ +   +L+A   
Sbjct: 437 ALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTS 496

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G Q H     L F  D  +   L+ MY  CG + DA+ +F++M+ +D++ WS M
Sbjct: 497 LSLLELGRQAHV--HVLKFDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTM 554

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           I G  QNG   E LNLFE MK+   +P+ + +  +L ACS AG ++ G
Sbjct: 555 IAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEG 602



 Score = 39.3 bits (90), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 4/99 (4%)

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM-TNEYNIPPKYEH 489
           D  +A+   + M+   +  + +T+  ++  C   G V EG+ +   + +N Y+  PK   
Sbjct: 265 DLPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYH--PKTFL 322

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
              +++++ + NLL EA  L + MP   NVV W ++++A
Sbjct: 323 TNILINMYVKFNLLEEAQVLFDKMP-ERNVVSWTTMISA 360


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/600 (40%), Positives = 367/600 (61%), Gaps = 17/600 (2%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD---ARLMFDKMSYRDIVPWSVMIDGYF 194
           Q+H    K    + PFV + L+ +Y    KI D   AR +FD++  R ++ W+ +I  Y 
Sbjct: 34  QLHAFSLKTAIFNHPFVSSRLLALYSD-PKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 92

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           +N    + + LF E+ +    PD   L  ++  C+R G +  G+ +H   +      D  
Sbjct: 93  ENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVF 151

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLK-----------NLVVSTAMVSGYSRAGQVEDA 303
           +Q +L+ MY+ CG +D A+ +FD ++ K           NLV   AM++GY ++G  + A
Sbjct: 152 VQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSA 211

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
             +F QM   DL+ W+ MI+GY  N    +A+K+F  M   G +P   T++SV+SA + L
Sbjct: 212 LELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGL 271

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
            VL + + IH Y++KN F  D  +  ++I+MYAKCG +ESA  VF  ++++ V  WT++I
Sbjct: 272 AVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAII 331

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
               IHG A +AL  F +M    + PN + FIGVL AC+HAGLVD+GR+ F  M NEY I
Sbjct: 332 VGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKI 391

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
            P  EHYGC+VD+  RA  L EA   +E MP +PN VIW SL+   R HG+I++ E+AA+
Sbjct: 392 EPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQ 451

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
           +++++ P+  G  +LLSN+YA    W+ V  +R+ M +RG  K+  CS +E    ++EF+
Sbjct: 452 RVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFI 511

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW-HSEKLALCY 662
             D SH QT +IY K++E+  +LK  G+VPD    L+ +E E+++E  L  HSE+LA+ +
Sbjct: 512 VGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAF 571

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           GLI+ K    IRI+KNLRVC DCH+  KL+SK+Y+REI++RD  RFHH+K+G CSC DYW
Sbjct: 572 GLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 631



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 132/465 (28%), Positives = 204/465 (43%), Gaps = 84/465 (18%)

Query: 13  LPTSTAIS---SCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYY 69
           LP +  +S   +CS+   ++Q HA  LK +  +H     +   LL  +S P    + L Y
Sbjct: 14  LPHNLHLSLFQTCSAPQEVEQLHAFSLKTAIFNHP---FVSSRLLALYSDPKI--NDLGY 68

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A SIF +I        N  I+    +      + +F ++++E L  D F+ P ++K  AR
Sbjct: 69  ARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLP-DNFTLPCVIKGCAR 127

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI------ 183
              + EG Q+HGL  K+GFGSD FVQ  LV MY  CG+I  AR +FD M  +D+      
Sbjct: 128 LGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSL 187

Query: 184 -----VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV------------------------ 214
                V W+ MI+GY ++G FD  L LF +M + ++                        
Sbjct: 188 IDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFF 247

Query: 215 -------EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
                   P    L  +LSA S    L  G  +H ++  N   LD  L ++LI MYA CG
Sbjct: 248 MMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCG 307

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
           C                               +E A  +F  + +K +  W+A+I G   
Sbjct: 308 C-------------------------------IESALTVFRAIQKKKVGHWTAIIVGLGI 336

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA-QRIHLYIDKNAFGGDLR 386
           +     AL LF EM   G+KP+ +  + V++AC H G++D   Q   + +++      L 
Sbjct: 337 HGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLE 396

Query: 387 VNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHG 430
               ++D+  + G LE A+   E M    N + W S++     HG
Sbjct: 397 HYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHG 441


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 252/685 (36%), Positives = 383/685 (55%), Gaps = 40/685 (5%)

Query: 46  NSLLLKLLLTSFSLPTTTPSSLYY-------ALSIFSQIPAPPSRVSNKFIRAISWSHRP 98
           + L+ KL   S++    +  S Y+       A  +F ++        N  I     +   
Sbjct: 274 HGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLD 333

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG-FGSDPFVQTG 157
              +++F+KML  G+ ID  +   +  A A    LL G  +H    K      +      
Sbjct: 334 DRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNT 393

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+ MY  CG +  A  +F++M  + +V W+ MI GY + GL D  + LF+EMK   V PD
Sbjct: 394 LLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPD 453

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
              ++ IL+AC+  GNL  G+ VH++I +NN                             
Sbjct: 454 VYAVTSILNACAINGNLKSGKIVHDYIRENN----------------------------- 484

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
             L  N  VS A+   Y++ G ++DA  +F  M +KD+I W+ MI GY +N+ P EAL L
Sbjct: 485 --LETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTL 542

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F EMQ    KPD  T+  ++ ACA L  LD+ + IH Y  +N +  D  V NA++DMY K
Sbjct: 543 FAEMQR-ESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVK 601

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CG L  AR +F+ +  ++++SWT MI  + +HG    A+  FN+M+   I+P+ V+FI +
Sbjct: 602 CGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISI 661

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           LYACSH+GL+DEG +IF  M  E  I P  EHY CMVDL  R   L +A + ++ MP  P
Sbjct: 662 LYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKP 721

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
           +  IWG+L+  CR+H +++LAE  A+++ +L+P++ G  VLL+NIYA+ ++W++V +LRK
Sbjct: 722 DATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRK 781

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            + +RG+ K   CS IE+  ++  F+  D S  Q  +I   L  + S++K  GY P    
Sbjct: 782 KIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAY 841

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
           AL++ ++ EK   +  HSEKLA+ +G+++      IR+ KNLRVC DCH   K +SK  +
Sbjct: 842 ALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSAS 901

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           REI++RD +RFHH+KDG CSC+ YW
Sbjct: 902 REIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  229 bits (583), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 156/528 (29%), Positives = 266/528 (50%), Gaps = 48/528 (9%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F ++      + N  I   S S     ++ +F +ML  G+  + ++F  ILK  A    
Sbjct: 207 VFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVAR 266

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           + EG QVHGL  KLGF S   V   L+  Y    K+  A+ +FD+++ RD++ W+ MI G
Sbjct: 267 VEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISG 326

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID-NNVAL 251
           Y +NGL D  + +F +M +  V+ D   +  +  AC+  G L  G+ +H + I    +  
Sbjct: 327 YVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDR 386

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           +    +TL+ MY+ CG ++ A  +F+++  K +V  T+M++GY R G  +          
Sbjct: 387 EVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDG--------- 437

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
                                 A+KLF+EM+  G+ PD   + S+++ACA  G L   + 
Sbjct: 438 ----------------------AIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKI 475

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           +H YI +N    +  V+NA+ DMYAKCGS++ A +VF  M++++VISW +MI  +  +  
Sbjct: 476 VHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSL 535

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA-SMTNEYNIPPKYEHY 490
              AL  F +M+ ES  P+G T   +L AC+    +D+GREI   ++ N Y+   KY   
Sbjct: 536 PNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYS-EDKYVT- 592

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH--GEIELAEFAAKQLLQL 548
             +VD++ +  LL  A  L + +P   ++V W  ++A   +H  G   +  F   ++  +
Sbjct: 593 NAVVDMYVKCGLLVLARSLFDMIP-NKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGI 651

Query: 549 DPDHDGALVLLSNIYA------KDKRWQDVGELRKSMKERGILKERAC 590
           +PD    +  +S +YA       D+ W+    ++K  +    L+  AC
Sbjct: 652 EPDE---VSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYAC 696



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 202/431 (46%), Gaps = 36/431 (8%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           K+A+++     N     D  ++  IL+  A  + + +G +V  +    G   D  +   L
Sbjct: 134 KNAMELLCSSQNS--NFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKL 191

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           V MY  CG + + R++FDK+S   I  W++MI  Y  +G + E +NLF++M    ++P+ 
Sbjct: 192 VFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNS 251

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
              S IL   +    +  G  VH  I          + ++LI+ Y     +  A+ LFD+
Sbjct: 252 YTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDE 311

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +  ++++   +M+S                               GY +N      +++F
Sbjct: 312 LTDRDVISWNSMIS-------------------------------GYVKNGLDDRGIEIF 340

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA-FGGDLRVNNAIIDMYAK 397
            +M V G+  D  TM++V  ACA++G L   + +H Y  K A    ++R NN ++DMY+K
Sbjct: 341 IKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSK 400

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CG L SA  VFERM  + V+SWTSMI  +   G +  A+  F++MK   + P+      +
Sbjct: 401 CGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSI 460

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L AC+  G +  G+ I      E N+         + D++ +   +++A ++   M    
Sbjct: 461 LNACAINGNLKSGK-IVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMK-KK 518

Query: 518 NVVIWGSLMAA 528
           +V+ W +++  
Sbjct: 519 DVISWNTMIGG 529



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 146/334 (43%), Gaps = 36/334 (10%)

Query: 199 FDEVLNLFEEMKM----SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           F EV +L   M++     N   D      IL  C+   ++  G  V   I  + V +D  
Sbjct: 127 FCEVGDLKNAMELLCSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGI 186

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           L   L+ MY  CG                                +++ R++FD++ E  
Sbjct: 187 LGVKLVFMYVKCG-------------------------------DLKEGRMVFDKLSESK 215

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           +  W+ MIS Y+ + +  E++ LF +M   G+KP+  T  S++   A +  +++ +++H 
Sbjct: 216 IFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHG 275

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
            I K  F     V N++I  Y     +  A+++F+ +  R+VISW SMI+ +  +G    
Sbjct: 276 LICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDR 335

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
            +  F KM    +D +  T + V  AC++ G +  G+ + +       +  +      ++
Sbjct: 336 GIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLL 395

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           D++ +   L  A+ + E M     VV W S++  
Sbjct: 396 DMYSKCGDLNSAIRVFERMD-EKTVVSWTSMITG 428


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 368/573 (64%), Gaps = 6/573 (1%)

Query: 152 PFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
           P +   L   Y + GKI  +  +F +    D+  ++  I+    NGL D+   L+ ++  
Sbjct: 62  PVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLS 121

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
           S + P+E   S IL +CS       G+ +H  ++   + LD ++ + L+ +YA  G +  
Sbjct: 122 SQINPNEFTFSSILKSCSTKS----GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVS 177

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
           A+ +FD++  ++LV STAM++ Y++ G VE AR +FD+M E+D++ W+ MI GY+++  P
Sbjct: 178 AQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFP 237

Query: 332 QEALKLFNEMQVCGM-KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
            +AL LF ++   G  KPD++T+++ +SAC+ +G L+  + IH++++ +    +++V  A
Sbjct: 238 SDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTA 297

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD-ESIDP 449
           +IDMY+KCGSLE A  VF    R+++++W +MI  +A+HG +++AL  F++M+    + P
Sbjct: 298 LIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQP 357

Query: 450 NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
             +TFIG L AC+HAGLV+EG +IF SM  EY I PK EHYGC+V L GRA  L+ A E+
Sbjct: 358 TDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEI 417

Query: 510 VETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW 569
           ++ M    + V+W S++ +C++HGE  L +  A+ L+  +  + G  VLLSNIYA    +
Sbjct: 418 IKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDY 477

Query: 570 QDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPA 629
           + V ++R  MKE+GI+KE   S IE++N+V+EF   DR H ++ +IY  L ++   +K  
Sbjct: 478 EGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIKSH 537

Query: 630 GYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFI 689
           GYVP+ ++ L DLE+ EK   +  HSE+LA+ YGLIS+K  S ++I KNLRVC DCH   
Sbjct: 538 GYVPNTNTVLHDLEETEKERSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVT 597

Query: 690 KLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KL+SK+  R+IV+RDR RFHH+ DG CSC D+W
Sbjct: 598 KLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 214/449 (47%), Gaps = 76/449 (16%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           I +  S+  + Q HA IL+ +   H +  +L   L  +++    +   + ++L++F Q  
Sbjct: 34  IDNSHSVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYA----SHGKIRHSLALFHQTI 89

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P   +    I   S +     A  +++++L+  +  + F+F  ILK+ +   G L    
Sbjct: 90  DPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKSGKL---- 145

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACG------KILD---------------------- 170
           +H    K G G DP+V TGLV +Y   G      K+ D                      
Sbjct: 146 IHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGN 205

Query: 171 ---ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM-SNVEPDEMVLSKILS 226
              AR +FD+M  RDIV W+VMIDGY Q+G   + L LF+++      +PDE+ +   LS
Sbjct: 206 VEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALS 265

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV 286
           ACS+ G L  G  +H F+  + + L+  + + LI MY+ CG ++ A  +F+    K++V 
Sbjct: 266 ACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVA 325

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ-VCG 345
             AM++GY+  G  +D                               AL+LF+EMQ + G
Sbjct: 326 WNAMITGYAMHGYSQD-------------------------------ALRLFDEMQGITG 354

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLES 403
           ++P  +T +  + ACAH G++++  +I   + +  +G   ++ +   ++ +  + G L+ 
Sbjct: 355 LQPTDITFIGTLQACAHAGLVNEGIQIFESMGQE-YGIKPKIEHYGCLVSLLGRAGQLKR 413

Query: 404 AREVFERMR-RRNVISWTSMINAFAIHGD 431
           A E+ + M    + + W+S++ +  +HG+
Sbjct: 414 AYEIIKNMNMEADSVLWSSVLGSCKLHGE 442


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/591 (41%), Positives = 363/591 (61%), Gaps = 29/591 (4%)

Query: 138 QVHGLGTKLGFGS-DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
           + HGL ++      D  + T LV  Y    KI  AR +FDKM+ R +V W+ M+ GY Q 
Sbjct: 287 EAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQG 346

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           G + E L LF++M+  NV PDE+ L  +LSAC    +   G +VH FI+   + +D  L 
Sbjct: 347 GYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLG 406

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           + L+ +YA CG +D A   F+++  K+     +M+ G+ R+G V+ AR  F+++ EKD++
Sbjct: 407 NALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIV 466

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            W+ M++ Y +++   E+ ++F +MQ   +KPDK T++S++S+CA +G L+    +++YI
Sbjct: 467 SWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYI 526

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
           +KN  G D  +  A+IDMY KCG +E A E+F ++  +NV  WT+M+ A+A+ G A  A+
Sbjct: 527 EKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAI 586

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             + +M++  + P+ VTFI +L ACSH GLVDEG + F  + + YNI P   HYGCMVDL
Sbjct: 587 DLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDL 646

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
            GR   L E ++ +E MP  P+V IW SLM ACR H  +ELAE A KQL+++DP ++GA 
Sbjct: 647 LGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAH 706

Query: 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           VLLSNIYA   RW DV ++R  + E G+ K+   + IE N  V+EF              
Sbjct: 707 VLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEF-------------- 752

Query: 617 EKLNEVISELKPAGYVPDIHSALVDLE-----DEEKREVILWHSEKLALCYGLISSKKDS 671
                V S L  A    DI   L D+E      +E  +    HSE+LA+ +GLI+++++S
Sbjct: 753 -----VASNLVSA----DILCMLQDIERRLLVKQELSDTTSQHSERLAVAFGLINNQENS 803

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            IR+V ++R+C DCH+ +KL+S+ Y REIVIRD  RFH + DG CSCKDYW
Sbjct: 804 PIRVVNSVRMCRDCHSVMKLISQAYDREIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 175/626 (27%), Positives = 312/626 (49%), Gaps = 83/626 (13%)

Query: 1   MSTLSQPT-----------KPLTLPTSTA------------ISSCSSLTHMKQTHAQILK 37
           M+TL+ P            KP TL   T+            + SCS++      HA ++ 
Sbjct: 1   MATLTLPNIFFSSLSPSIHKPPTLNPKTSHSVLRPHWIIDLLKSCSNIREFSPIHAHLIT 60

Query: 38  LSHSHHSQ-NSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSH 96
            +  H  +  S +L  LL+  +L          A  I S    P S + N  +       
Sbjct: 61  ANLIHDPEITSQVLAFLLSVNNLDC--------AHQILSYSHEPESIIWNTLLENKLKEG 112

Query: 97  RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQT 156
            P+  L+ +  M+ +G+ +D  +F  ++ A  +   +  G +VHG   K GFG +  +  
Sbjct: 113 CPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNN 172

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
            L+G+Y  CGK+ +   +F+KM++RD++ W+ MI  Y   G++ E L+LF+EM +S V P
Sbjct: 173 NLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLP 232

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           DE+ +  ++S C++  +L  G+ +H +I+DN + +   L + L+ MY+ CG MD A GL 
Sbjct: 233 DEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLL 292

Query: 277 DKVLLK--NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
            +      ++V+ T +VSGY ++ +++ AR +FD+M E+ L+ W+ M+SGY +  +  E+
Sbjct: 293 SRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCES 352

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
           L+LF +M+   + PD+V +++V+SAC HL   D  + +H +I       D  + NA++D+
Sbjct: 353 LELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDL 412

Query: 395 YAKCGSLES-------------------------------AREVFERMRRRNVISWTSMI 423
           YAKCG L+                                AR+ F ++  ++++SW +M+
Sbjct: 413 YAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMV 472

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
           NA+  H     +   F KM+  ++ P+  T I +L +C+  G ++ G  I+ ++  E N 
Sbjct: 473 NAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHG--IWVNVYIEKNE 530

Query: 484 PPKYEHYG-CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE-------- 534
                  G  ++D++G+   +  A E+  T     NV +W ++MAA  + G+        
Sbjct: 531 IGIDAMLGTALIDMYGKCGCVEMAYEIF-TQIIEKNVFVWTAMMAAYAMEGQALEAIDLY 589

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLS 560
           +E+ E   K      PDH   + LL+
Sbjct: 590 LEMEERGVK------PDHVTFIALLA 609


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/549 (41%), Positives = 335/549 (61%), Gaps = 31/549 (5%)

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +F  +   ++  W+ +I GY ++         + +M +S VEPD      +L A S++ N
Sbjct: 74  VFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLN 133

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           +  GEA+H   I N       +Q++L+ +YA CG                          
Sbjct: 134 VREGEAIHSVTIRNGFESLVFVQNSLLHIYAACG-------------------------- 167

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
                  E A  +F+ M E+DL+ W++MI+G+A N  P EAL LF EM V G++PD  T+
Sbjct: 168 -----DTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTV 222

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
           +S++SA A LG L+  +R+H+Y+ K     +  V N+++D+YAKCG++  A+ VF  M  
Sbjct: 223 VSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSE 282

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           RN +SWTS+I   A++G    AL  F +M+ + + P+ +TF+GVLYACSH G++DEG E 
Sbjct: 283 RNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEY 342

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           F  M  E  I P+ EHYGCMVDL  RA L+++A E ++ MP  PN VIW +L+ AC +HG
Sbjct: 343 FRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHG 402

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
            + L E A   LL L+P H G  VLLSN+YA ++RW DV  +R+SM + G+ K    S +
Sbjct: 403 HLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLV 462

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW 653
           E+ N VYEF   DRSH Q+  +Y  L ++   LK  GYVP   + L D+E+EEK + + +
Sbjct: 463 ELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSY 522

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HSEK+A+ + L+++   + IR++KNLRVC DCH  IKL++K+Y REIVIRDR+RFHH++ 
Sbjct: 523 HSEKVAIAFMLLNTPPGTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRG 582

Query: 714 GVCSCKDYW 722
           G CSCKDYW
Sbjct: 583 GSCSCKDYW 591



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 127/430 (29%), Positives = 215/430 (50%), Gaps = 42/430 (9%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLK-LLLTSFSLPTTT 63
           + P  PLT   S      SS   +KQ HA    + H     N  + K L+ T  SL  + 
Sbjct: 11  TTPENPLTKCISLLQFCASSKHKLKQIHA--FSIRHGVSLNNPDMGKHLIFTIVSL--SA 66

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
           P S  YA ++F+ I  P     N  IR  + S  P  A   + +M+   +  D  ++P +
Sbjct: 67  PMS--YAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFL 124

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           LKAI+++  + EG  +H +  + GF S  FVQ  L+ +Y ACG    A  +F+ M  RD+
Sbjct: 125 LKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDL 184

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           V W+ MI+G+  NG  +E L LF EM +  VEPD   +  +LSA +  G L  G  VH +
Sbjct: 185 VAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVY 244

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           ++   ++ ++H+ ++L+ +YA CG +  A+ +F ++  +N V  T+++ G +        
Sbjct: 245 LLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLA-------- 296

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
                             ++G+ E     EAL+LF EM+  G+ P ++T + V+ AC+H 
Sbjct: 297 ------------------VNGFGE-----EALELFKEMEGQGLVPSEITFVGVLYACSHC 333

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWT 420
           G+LD+    +    K   G   R+ +   ++D+ ++ G ++ A E  + M  + N + W 
Sbjct: 334 GMLDEGFE-YFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWR 392

Query: 421 SMINAFAIHG 430
           +++ A  IHG
Sbjct: 393 TLLGACTIHG 402


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/557 (42%), Positives = 347/557 (62%), Gaps = 3/557 (0%)

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN--VEPDEMVLSKIL 225
           +L +  + D+ +   +   + MI  Y ++    +    + ++  SN  + PD    + ++
Sbjct: 59  LLYSNQILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLV 118

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
             C+++     G AVH  +I +    D H++S LI MYA   C+     +F+ V   +LV
Sbjct: 119 RTCAQSA-CEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLV 177

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
             T MVS  ++ G +  AR +FD M ++D + W+AMI+GYA+    +EAL LF  MQ+ G
Sbjct: 178 CQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDG 237

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
           +K ++V+M+SV++AC HLG LDQ +  H YI+KN     + +  A++DMY KCG+++ A 
Sbjct: 238 VKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRAL 297

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
           +VF  M  +NV +W++ I   A++G  +  L  F+ MK E I PN +TFI VL  CS  G
Sbjct: 298 KVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVG 357

Query: 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
            VDEGR  F SM  ++ I P+ EHYGCMVDL+GRA  L EAL  + TMP  P+   WG+L
Sbjct: 358 FVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGAL 417

Query: 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585
           + ACR++  +EL EFA+++L++++  + GA V LSNIYA    W  V  +R+SMK  GI 
Sbjct: 418 LNACRMYKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGIS 477

Query: 586 KERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDE 645
           K   CS +E+N EV+EF + D+SH   D I     E+   LK AGYV   +S L D+E+E
Sbjct: 478 KLPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEE 537

Query: 646 EKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDR 705
           EK + +  HSEK+A+ +GL S K+   IRIVKNLR+C DCH+  K++SK++ REI++RDR
Sbjct: 538 EKEDALCKHSEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDR 597

Query: 706 TRFHHYKDGVCSCKDYW 722
            RFHH+KDG CSCKD+W
Sbjct: 598 NRFHHFKDGECSCKDFW 614



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 137/464 (29%), Positives = 215/464 (46%), Gaps = 83/464 (17%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLL-KLLLTSF-- 57
           MSTL    K    PT   I S  +L  +KQ H Q++         N LL  + LL  F  
Sbjct: 1   MSTLRNIAKH---PTIALIDSFITLKELKQIHTQLVI--------NGLLNNRELLGQFVA 49

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML--NEGLTI 115
           S+    P++L Y+  I  Q   P     N  IRA S S  P  + + + K+L  N+ ++ 
Sbjct: 50  SIAVRNPTNLLYSNQILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSP 109

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY------------- 162
           D ++F  +++  A++     G  VHG   K GF  DP V++GL+ MY             
Sbjct: 110 DNYTFNFLVRTCAQS-ACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVF 168

Query: 163 ------------------GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
                               CG I  AR +FD M  RD V W+ MI GY Q G   E LN
Sbjct: 169 ESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALN 228

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           LF+ M+M  V+ +E+ +  +++AC+  G L  G+  H +I  N + +  +L + L+ MY 
Sbjct: 229 LFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYF 288

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
            CG +D A        LK                       +F +M EK++  WS  I G
Sbjct: 289 KCGNVDRA--------LK-----------------------VFWEMNEKNVYTWSTAIGG 317

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
            A N + Q+ L+LF+ M+  G+ P+++T +SV+  C+ +G +D+  R H    K   G +
Sbjct: 318 LAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEG-RSHFDSMKRDHGIE 376

Query: 385 LRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINA 425
            R+ +   ++D+Y + G LE A      M  + +  +W +++NA
Sbjct: 377 PRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNA 420


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/553 (42%), Positives = 354/553 (64%), Gaps = 32/553 (5%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           AR +FD MS  DIV ++ +  GY ++    EV NLF E+   ++ PD      +L AC+ 
Sbjct: 84  ARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAV 143

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
           A  L  G  +H                          C+ M  G+ D     N+ V   +
Sbjct: 144 AKALEEGRQLH--------------------------CLSMKLGVDD-----NVYVCPTL 172

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           ++ Y+    V+ AR +FD++VE  ++C++AMI+GYA  N P EAL LF EMQ   +KP++
Sbjct: 173 INMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNE 232

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           +T+LSV+S+CA LG LD  + IH Y  K+ F   ++VN A+IDM+AKCGSL+ A  +FE 
Sbjct: 233 ITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFEN 292

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           MR ++  +W++MI A+A HG A N+++ F +M+ E++ P+ +TF+G+L ACSH GLV+EG
Sbjct: 293 MRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEG 352

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
           RE F+ M +E+ I P  +HYG MVDL GRA  L +A E ++ +P +P  ++W  L+AAC 
Sbjct: 353 REYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACS 412

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
            H  +ELAE  ++++L+LD  H G  V+LSN+YA++K+W+ V  LRK MK+R  +K   C
Sbjct: 413 SHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGC 472

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL-VDLEDEEKRE 649
           S IE+NN V+EF + D     T +++  L+E++ ELK AGYVPD    +  D+ D+EK  
Sbjct: 473 SSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLAGYVPDTSMVVHADMGDQEKEI 532

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
            + +HSEKLA+ +GL+++   + IR+VKNLRVC DCH+  KL+S ++ R++V+RD  RFH
Sbjct: 533 TLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFH 592

Query: 710 HYKDGVCSCKDYW 722
           H++DG CSC+D+W
Sbjct: 593 HFEDGKCSCRDFW 605



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/414 (28%), Positives = 209/414 (50%), Gaps = 47/414 (11%)

Query: 8   TKPLTLPTSTA--------ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL 59
           TKPL + T           IS C+S   + Q  A  +K   SH    S   KL+  +F  
Sbjct: 19  TKPLKIDTVNPNPPNPILLISKCNSERELMQIQAYAIK---SHQEDVSFNTKLI--NFCT 73

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
            + T SS+ YA  +F  +  P   + N   R  S S  P     +F+++L + L  D ++
Sbjct: 74  ESPTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYT 133

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           FP +LKA A A+ L EG Q+H L  KLG   + +V   L+ MY  C  +  AR +FD++ 
Sbjct: 134 FPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIV 193

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
              +V ++ MI GY +    +E L+LF EM+  N++P+E+ L  +LS+C+  G+L  G+ 
Sbjct: 194 EPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKW 253

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +HE+   +       + + LI M+A CG +D A  +F+ +  K+    +AM+  Y+  GQ
Sbjct: 254 IHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQ 313

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
            E++ L+F++M               +EN                 ++PD++T L +++A
Sbjct: 314 AENSMLMFERM--------------RSEN-----------------VQPDEITFLGLLNA 342

Query: 360 CAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERM 411
           C+H G++++ +    ++  + FG    ++   +++D+  + G LE A E  +++
Sbjct: 343 CSHTGLVEEGREYFSWM-VHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKL 395


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 259/682 (37%), Positives = 384/682 (56%), Gaps = 45/682 (6%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR-AEGLLEGMQVHGLGT 144
           N  I   S ++    A+++F  +L  G   D F+F  +L A+A   E   +  Q+H    
Sbjct: 118 NAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVV 177

Query: 145 KLGFGSDPFVQTGLVGMYGACGK---------ILDARLMFDKMSYRD------------- 182
           K G G    V   L+ ++  C           +  AR +FD+M+ RD             
Sbjct: 178 KSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVR 237

Query: 183 ------------------IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
                             +V W+ MI GY  +G F E L +F +M +  ++ DE   + +
Sbjct: 238 NGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSV 297

Query: 225 LSACSRAGNLSYGEAVHEFII--DNNVALDAHL--QSTLITMYANCGCMDMAKGLFDKVL 280
           LSAC+ AG   +G+ VH +I+  +   +LD  L   + L T+Y  CG +D A+ +F+++ 
Sbjct: 298 LSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMP 357

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
           +K+LV   A++SGY  AG++++A+  F++M E++L+ W+ MISG A+N   +E+LKLFN 
Sbjct: 358 VKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNR 417

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M+  G +P        I ACA L  L   +++H  + +  F   L   NA+I MYAKCG 
Sbjct: 418 MKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGV 477

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E+A  +F  M   + +SW +MI A   HG    AL  F  M  E I P+ +TF+ VL  
Sbjct: 478 VEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLST 537

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSHAGLV+EG   F SM+  Y I P  +HY  M+DL  RA    EA +++ETMP  P   
Sbjct: 538 CSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPP 597

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           IW +L+A CR+HG ++L   AA++L +L P HDG  VLLSN+YA   RW DV ++RK M+
Sbjct: 598 IWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMR 657

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           ++G+ KE  CS IE+ N+V+ FL  D  H +   +Y  L E+  +++  GY+PD    L 
Sbjct: 658 DKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLH 717

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D+E E+K  V+  HSEKLA+ +GL+     + +R+ KNLR+C DCHN  K +SKV  REI
Sbjct: 718 DMESEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREI 777

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           V+RD  RFHH+K+G CSC +YW
Sbjct: 778 VVRDGKRFHHFKNGECSCGNYW 799



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/462 (26%), Positives = 214/462 (46%), Gaps = 55/462 (11%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMF--DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
           D   +T L+  + + G    AR +F    +  RD V ++ MI GY  N      + LF +
Sbjct: 80  DIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRD 139

Query: 209 MKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           +  +   PD    + +L A +    +    + +H  ++ +       + + L++++  C 
Sbjct: 140 LLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCA 199

Query: 268 C---------MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
                     M  A+ LFD++  ++ +  T M++GY R G+++ AR   D M EK ++ W
Sbjct: 200 SSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAW 259

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI-- 376
           +AMISGY  +    EAL++F +M + G++ D+ T  SV+SACA+ G     +++H YI  
Sbjct: 260 NAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILR 319

Query: 377 --DKNAFGGDLRVNNAIIDMYAKCGSLESAREV--------------------------- 407
              + +    L VNNA+  +Y KCG ++ AR+V                           
Sbjct: 320 TEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDE 379

Query: 408 ----FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
               FE M  RN+++WT MI+  A +G    +L  FN+MK E  +P    F G + AC+ 
Sbjct: 380 AKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAW 439

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
              +  GR++ A +               ++ ++ +  ++  A  L  TMP+  +V  W 
Sbjct: 440 LAALMHGRQLHAQLV-RLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVS-WN 497

Query: 524 SLMAACRVHGE----IELAEFAAKQLLQLDPDHDGALVLLSN 561
           +++AA   HG     +EL E   K+   + PD    L +LS 
Sbjct: 498 AMIAALGQHGHGAQALELFELMLKE--DILPDRITFLTVLST 537



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 163/364 (44%), Gaps = 51/364 (14%)

Query: 225 LSACSRAGNLSYGEA--VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
           L  C     +SY  A  VH  +I +      ++ + LI +Y     +  A  LFD++   
Sbjct: 20  LQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQP 79

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIF--DQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
           ++V  T +++ +S AG    AR IF    +  +D +C++AMI+GY+ NN    A++LF +
Sbjct: 80  DIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRD 139

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLD--QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           +   G +PD  T  SV+ A A L V D  Q Q+IH  + K+  G    V NA++ ++ KC
Sbjct: 140 LLRNGFRPDNFTFTSVLGALA-LIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKC 198

Query: 399 ----------------------------------------GSLESAREVFERMRRRNVIS 418
                                                   G L++AR+  + M  + V++
Sbjct: 199 ASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVA 258

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           W +MI+ +  HG    AL  F KM    I  +  T+  VL AC++AG    G+++ A + 
Sbjct: 259 WNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYIL 318

Query: 479 NEYNIPP---KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
                P           +  L+ +   + EA ++   MP   ++V W ++++     G I
Sbjct: 319 RTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMP-VKDLVSWNAILSGYVNAGRI 377

Query: 536 ELAE 539
           + A+
Sbjct: 378 DEAK 381



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 108/256 (42%), Gaps = 31/256 (12%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A S F ++P          I  ++ +   + +LK+F +M +EG     ++F   + A A 
Sbjct: 380 AKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAW 439

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L+ G Q+H    +LGF S       L+ MY  CG +  A  +F  M Y D V W+ M
Sbjct: 440 LAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAM 499

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I    Q+G   + L LFE M   ++ PD +    +LS CS AG +  G   H +      
Sbjct: 500 IAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEG---HRYF----- 551

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                   ++  +Y  C   D    + D +                RAG+  +A+ + + 
Sbjct: 552 -------KSMSGLYGICPGEDHYARMIDLL---------------CRAGKFSEAKDMIET 589

Query: 310 M-VEKDLICWSAMISG 324
           M VE     W A+++G
Sbjct: 590 MPVEPGPPIWEALLAG 605



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 108/272 (39%), Gaps = 50/272 (18%)

Query: 5   SQPTKPLTLPTSTAISSCS---SLTHMKQTHAQILKLSH--SHHSQNSLLLKLLLTSFSL 59
           S+  +P     + AI +C+   +L H +Q HAQ+++L    S  + N+     L+T ++ 
Sbjct: 420 SEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNA-----LITMYAK 474

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
                +    A  +F  +P   S   N  I A+        AL++F  ML E +  DR +
Sbjct: 475 CGVVEA----AHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRIT 530

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC-GKILDARLMFDKM 178
           F  +L   + A  + EG +         F S       + G+YG C G+   AR      
Sbjct: 531 FLTVLSTCSHAGLVEEGHRY--------FKS-------MSGLYGICPGEDHYAR------ 569

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
                     MID   + G F E  ++ E M    VEP   +   +L+ C   GN+  G 
Sbjct: 570 ----------MIDLLCRAGKFSEAKDMIETMP---VEPGPPIWEALLAGCRIHGNMDLGI 616

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
              E + +     D      L  MYA  G  D
Sbjct: 617 QAAERLFELMPQHDG-TYVLLSNMYATVGRWD 647


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 248/667 (37%), Positives = 378/667 (56%), Gaps = 44/667 (6%)

Query: 65  SSLYYALS-------IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTID 116
           + LY+ LS       +F  +P+P + + N  +  +S S     A++ F +M+ +G +  D
Sbjct: 156 AKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGSE----AVESFARMVCDGSVRPD 211

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
             +   +L A A    +  G  VH    K G      V TGL+ +Y  CG +  AR +FD
Sbjct: 212 ATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFD 271

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
            M   D+V ++ +I GY  NG+    +NLF E+    + P+   L  ++   S  G+   
Sbjct: 272 MMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLL 331

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
            + +H F++ +                                   N  VSTA+ + + R
Sbjct: 332 AQCLHGFVLKSG-------------------------------FTANSPVSTAITTLHCR 360

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
              +E AR  FD M EK +  W+AMISGYA+N   + A+ LF +M    ++P+ +T+ S 
Sbjct: 361 LNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISST 420

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           +SACA LG L   + +H  I +     ++ V  A+IDMYAKCGS+  AR +F  M  +NV
Sbjct: 421 LSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNV 480

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           +SW +MI  + +HG    AL  +  M D  + P   TF+ VLYACSH GLV+EG ++F S
Sbjct: 481 VSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRS 540

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP-FAPNVVIWGSLMAACRVHGEI 535
           MT++Y I P  EH  CMVDL GRA  L+EA EL+   P  A    +WG+L+ AC VH + 
Sbjct: 541 MTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDS 600

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           +LA+ A+++L +LDP++ G  VLLSN++   K++ +   +R+  K R ++K    + IE+
Sbjct: 601 DLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEI 660

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
            N+ + F+  DR+H Q++ IY  L ++ +++  AGY P+  +AL D+E+EEK  ++  HS
Sbjct: 661 GNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHS 720

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ +GL+S++  + IRI+KNLRVC DCHN  K +SKV  R IV+RD +RFHH++DGV
Sbjct: 721 EKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGV 780

Query: 716 CSCKDYW 722
           CSC DYW
Sbjct: 781 CSCGDYW 787


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/658 (36%), Positives = 373/658 (56%), Gaps = 31/658 (4%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
           S + YA  +F ++P   + + N  I  +  +     +++VF  M+ +G+ +D  +   +L
Sbjct: 152 SRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVL 211

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            A+A  + +  GM +  L  KLGF  D +V TGL+ ++  C  +  ARL+F  +   D+V
Sbjct: 212 PAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLV 271

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            ++ +I G+  NG  +  +  F E+ +S        +  ++   S  G+L     +  F 
Sbjct: 272 SYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFC 331

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           + +   L                                  VSTA+ + YSR  +++ AR
Sbjct: 332 VKSGTILQPS-------------------------------VSTALTTIYSRLNEIDLAR 360

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            +FD+  EK +  W+AMISGYA++   + A+ LF EM      P+ VT+ S++SACA LG
Sbjct: 361 QLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLG 420

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L   + +H  I       ++ V+ A+IDMYAKCG++  A ++F+    +N ++W +MI 
Sbjct: 421 ALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIF 480

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
            + +HG    AL  FN+M      P+ VTF+ VLYACSHAGLV EG EIF +M N+Y I 
Sbjct: 481 GYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIE 540

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P  EHY CMVD+ GRA  L +ALE +  MP  P   +WG+L+ AC +H +  LA  A+++
Sbjct: 541 PLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASER 600

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           L +LDP + G  VLLSNIY+ ++ +     +R+++K+R + K   C+ IE+N   + F+ 
Sbjct: 601 LFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVC 660

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            DRSH QT  IY KL E+  +++  GY  +  +AL D+E+EEK  +   HSEKLA+ +GL
Sbjct: 661 GDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGL 720

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           I+++  + IRI+KNLRVC DCH   K +SK+  R IV+RD  RFHH+KDG+CSC DYW
Sbjct: 721 ITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/548 (24%), Positives = 245/548 (44%), Gaps = 48/548 (8%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           IS   +  H+ +THAQ+++  + H    + + KL    F +  T      +A ++F  +P
Sbjct: 15  ISKACTFPHLAETHAQLIRNGYQH--DLATVTKLTQKLFDVGATR-----HARALFFSVP 67

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKML--NEGLTIDRFSFPPILKAIARAEGLLEG 136
            P   + N  I+  S+S  P  +   F   L  N  L+ D F++     AI+ +     G
Sbjct: 68  KPDIFLFNVLIKGFSFS--PDASSISFYTHLLKNTTLSPDNFTYA---FAISASPDDNLG 122

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
           M +H      GF S+ FV + LV +Y    ++  AR +FDKM  RD V W+ MI G  +N
Sbjct: 123 MCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRN 182

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
             +D+ + +F++M    V  D   ++ +L A +    +  G  +    +      D ++ 
Sbjct: 183 CCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVL 242

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           + LI++++ C  +D A+ LF  +   +LV   A++SG+S  G+ E               
Sbjct: 243 TGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETE--------------- 287

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
           C                A+K F E+ V G +    TM+ +I   +  G L  A  I  + 
Sbjct: 288 C----------------AVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFC 331

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            K+       V+ A+  +Y++   ++ AR++F+    + V +W +MI+ +A  G    A+
Sbjct: 332 VKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAI 391

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             F +M      PN VT   +L AC+  G +  G+ +   +    N+         ++D+
Sbjct: 392 SLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVH-QLIKSKNLEQNIYVSTALIDM 450

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
           + +   + EA +L + +    N V W +++    +HG  + A     ++L L      ++
Sbjct: 451 YAKCGNISEASQLFD-LTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLG-FQPSSV 508

Query: 557 VLLSNIYA 564
             LS +YA
Sbjct: 509 TFLSVLYA 516



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/458 (20%), Positives = 190/458 (41%), Gaps = 68/458 (14%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +L  I++A       + H    + G+  D    T L       G    AR +F  +   D
Sbjct: 11  LLALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPD 70

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           I  ++V+I G+  +     +      +K + + PD    +  +SA               
Sbjct: 71  IFLFNVLIKGFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAISASP------------- 117

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
              D+N+ +  H  + +                FD     NL V++A+V  Y +  +V  
Sbjct: 118 ---DDNLGMCLHAHAVV--------------DGFDS----NLFVASALVDLYCKFSRVAY 156

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           AR +FD+M ++D + W+ MI+G   N    +++++F +M   G++ D  T+ +V+ A A 
Sbjct: 157 ARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAE 216

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           +  +     I     K  F  D  V   +I +++KC  +++AR +F  +R+ +++S+ ++
Sbjct: 217 MQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNAL 276

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL----------YACSHAGL------ 466
           I+ F+ +G+   A+ +F ++       +  T +G++           AC   G       
Sbjct: 277 ISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGT 336

Query: 467 -----VDEGREIFASMTNEYNIPPK---------YEHYGCMVDLFGRANLLREALELVE- 511
                V        S  NE ++  +            +  M+  + ++ L   A+ L + 
Sbjct: 337 ILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQE 396

Query: 512 --TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
             T  F PN V   S+++AC   G +   + +  QL++
Sbjct: 397 MMTTEFTPNPVTITSILSACAQLGALSFGK-SVHQLIK 433


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 254/715 (35%), Positives = 401/715 (56%), Gaps = 43/715 (6%)

Query: 12  TLPTSTAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY 68
           T   + A+ +C   + +K   Q HA ILK   S    +  +   L+  +      P    
Sbjct: 160 TYTFAAALQACEDSSFIKLGMQIHAAILK---SGRVLDVYVANALVAMYVRFGKMPE--- 213

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
            A  IF  +        N  +     +     AL+ F  + N  L  D+ S   I+ A  
Sbjct: 214 -AAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASG 272

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           R   LL G ++H    K GF S+  V   L+ MY  C  +      FD M+++D++ W+ 
Sbjct: 273 RLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTT 332

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
              GY QN  + + L L  +++M  ++ D  ++  IL AC     L   + +H + I   
Sbjct: 333 AAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGG 392

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           ++ D  LQ+T+I +Y  CG +D A                                 IF+
Sbjct: 393 LS-DPVLQNTIIDVYGECGIIDYAV-------------------------------RIFE 420

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
            +  KD++ W++MIS Y  N    +AL++F+ M+  G++PD VT++S++SA   L  L +
Sbjct: 421 SIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKK 480

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            + IH +I +  F  +  ++N ++DMYA+CGS+E A ++F   + RN+I WT+MI+A+ +
Sbjct: 481 GKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGM 540

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG    A+  F +MKDE I P+ +TF+ +LYACSH+GLV+EG+     M  EY + P  E
Sbjct: 541 HGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPE 600

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HY C+VDL GR N L EA ++V++M   P   +W +L+ ACR+H   E+ E AA++LL+L
Sbjct: 601 HYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLEL 660

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           D D+ G  VL+SN++A + RW+DV E+R  MK  G+ K   CS IE+ N+++ FL+ D+ 
Sbjct: 661 DLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKL 720

Query: 609 HKQTDQIYEKLNEVISELK-PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS 667
           H + D+IY+KL +V  +LK   GYV      L ++ +EEK +++  HSE+LA+ YGL+++
Sbjct: 721 HPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYGHSERLAIAYGLLAT 780

Query: 668 KKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + + IR+ KNLRVC DCH+F  LVS+ + RE+++RD +RFHH+KDG+CSC D+W
Sbjct: 781 AEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGMCSCGDFW 835



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 150/524 (28%), Positives = 255/524 (48%), Gaps = 44/524 (8%)

Query: 46  NSLLLKLLLTSFSLPTTTPSSLYY-------ALSIFSQIPAPPSRVS-NKFIRAISWSHR 97
           + L +K    SF     +  +LY        A  +F ++      VS N  I A S +  
Sbjct: 81  HGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGM 140

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
              AL +F +ML  G+  + ++F   L+A   +  +  GMQ+H    K G   D +V   
Sbjct: 141 CTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANA 200

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           LV MY   GK+ +A ++F  +  +DIV W+ M+ G+ QNGL+ E L  F +++ ++++PD
Sbjct: 201 LVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPD 260

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           ++ +  I+ A  R G L  G+ +H + I N    +  + +TLI MYA C CM      FD
Sbjct: 261 QVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFD 320

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
            +  K+                               LI W+   +GYA+N    +AL+L
Sbjct: 321 LMAHKD-------------------------------LISWTTAAAGYAQNKCYLQALEL 349

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
             ++Q+ GM  D   + S++ AC  L  L + + IH Y  +     D  + N IID+Y +
Sbjct: 350 LRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGL-SDPVLQNTIIDVYGE 408

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CG ++ A  +FE +  ++V+SWTSMI+ +  +G A  AL  F+ MK+  ++P+ VT + +
Sbjct: 409 CGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSI 468

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L A      + +G+EI   +  +  I         +VD++ R   + +A ++  T     
Sbjct: 469 LSAVCSLSTLKKGKEIHGFIIRKGFILEG-SISNTLVDMYARCGSVEDAYKIF-TCTKNR 526

Query: 518 NVVIWGSLMAACRVHGEIELAE--FAAKQLLQLDPDHDGALVLL 559
           N+++W ++++A  +HG  E A   F   +  ++ PDH   L LL
Sbjct: 527 NLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALL 570



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/466 (28%), Positives = 225/466 (48%), Gaps = 39/466 (8%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL+++ +M + G++ D ++FP +LKA    E L  G ++HGL  K G  S  FV   LV 
Sbjct: 42  ALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVA 101

Query: 161 MYGACGKILDARLMFDKMSYR-DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
           +Y  C  I  AR +FD+M  R D+V W+ +I  Y  NG+  E L LF EM  + V  +  
Sbjct: 102 LYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTY 161

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
             +  L AC  +  +  G  +H  I+ +   LD ++ + L+ MY   G M  A  +F  +
Sbjct: 162 TFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNL 221

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
             K++V   +M++                               G+ +N    EAL+ F 
Sbjct: 222 EGKDIVTWNSMLT-------------------------------GFIQNGLYSEALEFFY 250

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           ++Q   +KPD+V+++S+I A   LG L   + IH Y  KN F  ++ V N +IDMYAKC 
Sbjct: 251 DLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCC 310

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
            +      F+ M  +++ISWT+    +A +     AL    +++ E +D +      +L 
Sbjct: 311 CMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILL 370

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           AC     + + +EI           P  ++   ++D++G   ++  A+ + E++    +V
Sbjct: 371 ACRGLNCLGKIKEIHGYTIRGGLSDPVLQN--TIIDVYGECGIIDYAVRIFESIE-CKDV 427

Query: 520 VIWGSLMAACRVHGEI---ELAEFAAKQLLQLDPDHDGALVLLSNI 562
           V W S M +C VH  +    L  F++ +   L+PD+   + +LS +
Sbjct: 428 VSWTS-MISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAV 472



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 149/316 (47%), Gaps = 32/316 (10%)

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MYG CG +LDA ++FDKMS R I  W+ M+ GY  NG     L ++ EM+   V  D   
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
              +L AC    +L  G  +H   I         + ++L+ +YA C  ++ A+ LFD++ 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 281 LKNLVVS-TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
           ++N VVS  +++S YS  G                                  EAL LF+
Sbjct: 121 VRNDVVSWNSIISAYSGNGMC-------------------------------TEALCLFS 149

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           EM   G+  +  T  + + AC     +    +IH  I K+    D+ V NA++ MY + G
Sbjct: 150 EMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFG 209

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
            +  A  +F  +  +++++W SM+  F  +G    AL FF  +++  + P+ V+ I ++ 
Sbjct: 210 KMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIV 269

Query: 460 ACSHAGLVDEGREIFA 475
           A    G +  G+EI A
Sbjct: 270 ASGRLGYLLNGKEIHA 285



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 3/236 (1%)

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           Y + G V DA +IFD+M E+ +  W+AM+ GY  N     AL+++ EM+  G+  D  T 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
             ++ AC  +  L     IH    K      + V N+++ +YAKC  +  AR++F+RM  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 414 RN-VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
           RN V+SW S+I+A++ +G    AL  F++M    +  N  TF   L AC  +  +  G +
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           I A++     +   Y     +V ++ R   + EA  +   +    ++V W S++  
Sbjct: 182 IHAAILKSGRVLDVYVA-NALVAMYVRFGKMPEAAVIFGNLE-GKDIVTWNSMLTG 235



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 72/138 (52%), Gaps = 7/138 (5%)

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
           MY KCGS+  A  +F++M  R++ +W +M+  +  +G+A  AL  + +M+   +  +  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 454 FIGVLYACSHAGLVDE---GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
           F  +L AC   G+V++   G EI   +  +Y           +V L+ + N +  A +L 
Sbjct: 61  FPVLLKAC---GIVEDLFCGAEIHG-LAIKYGCDSFVFVVNSLVALYAKCNDINGARKLF 116

Query: 511 ETMPFAPNVVIWGSLMAA 528
           + M    +VV W S+++A
Sbjct: 117 DRMYVRNDVVSWNSIISA 134


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/715 (36%), Positives = 389/715 (54%), Gaps = 47/715 (6%)

Query: 55  TSFSLPTTTPSSLYYALSIFSQIP--APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG 112
           T+     +    L  +  IFS  P     S   N  I A S +H    A+++F  M  + 
Sbjct: 83  TTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDN 142

Query: 113 LTIDRFSFPPILKAIAR-AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK---- 167
              D ++F  +L A+A  AE      Q+H    K G G    V   L+  Y  C      
Sbjct: 143 FRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSA 202

Query: 168 -----ILDARLMFDKMSYRDIVPWSVMIDGYFQN-------------------------- 196
                + +AR +FD+M  RD + W+ +I GY +N                          
Sbjct: 203 QSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMIS 262

Query: 197 -----GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN--NV 249
                GL+ E   +F +M MS ++ DE   + ++S C+ AG    G+ +H + +    N 
Sbjct: 263 GYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANP 322

Query: 250 ALDAHL--QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
           A D  +   + LIT Y  CG +D+A+ +F+K+  ++LV    ++SGY     +++A+  F
Sbjct: 323 APDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFF 382

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
           ++M EK+++ W  MISG A+    +EALK FN M++ G +P        I +C+ LG L 
Sbjct: 383 NEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLK 442

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
             +++H  + +  +   L   NA+I MYA+CG +++A  +F  M   + ISW +MI A  
Sbjct: 443 HGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALG 502

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            HG    A+  F +M  E I P+ ++F+ V+ ACSHAGLV EGR+ F SM N Y + P  
Sbjct: 503 QHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDE 562

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
           EHY  ++DL  RA    EA E++E+MPF P   IW +L+A CR+HG I+L   AA++L +
Sbjct: 563 EHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFE 622

Query: 548 LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
           L P HDG  VLLSN+YA   +W D+ ++RK M++RG+ KE  CS IE+ N+V+ FL  D 
Sbjct: 623 LKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDA 682

Query: 608 SHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS 667
           +H +  QIY  L +++ E++  GYVPD    L D+E + K   +  HSEKLA+ YG +  
Sbjct: 683 NHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMKL 742

Query: 668 KKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              + +R+ KNLR+C DCHN  K +SKV  REIV+RD  RFHH++DG CSC DYW
Sbjct: 743 PHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 207/461 (44%), Gaps = 55/461 (11%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDK--MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
           D   +T L+  Y A G +  +R +F    +  RD V ++ MI  Y  N      + LF +
Sbjct: 78  DIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCD 137

Query: 209 MKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           M+  N  PD    + +L A +  A    + + +H  ++ +       + + LI+ Y  C 
Sbjct: 138 MQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCA 197

Query: 268 ---------CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
                     M  A+ LFD++  ++ +  T +++GY +   ++ A+   +   +K  + W
Sbjct: 198 ASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAW 257

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +AMISGYA      EA ++F +M +  ++ D+ T  SVIS CA+ G     + +H Y  K
Sbjct: 258 NAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLK 317

Query: 379 N----AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR-------------------- 414
                A    + VNNA+I  Y KCG ++ A+E+F +M  R                    
Sbjct: 318 TVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDE 377

Query: 415 -----------NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
                      N++SW  MI+  A  G A  AL FFN+MK +  +P    F G + +CS 
Sbjct: 378 AKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSV 437

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
            G +  GR++ A +   Y           ++ ++ R  ++  A  L   MP   + + W 
Sbjct: 438 LGSLKHGRQLHAQVV-RYGYESSLSAGNALITMYARCGVVDAAHCLFINMP-CVDAISWN 495

Query: 524 SLMAACRVHGE----IELAEFAAKQLLQLDPDHDGALVLLS 560
           +++AA   HG+    IEL E   K+   + PD    L ++S
Sbjct: 496 AMIAALGQHGQGTQAIELFEEMLKE--GILPDRISFLTVIS 534



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 135/268 (50%), Gaps = 18/268 (6%)

Query: 224 ILSACSRAGNLSYGEA--VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           +L  C     +SY  A  VH  +I +      H+ + LI +Y+    ++ A+ LFD++  
Sbjct: 17  LLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQ 76

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQ--MVEKDLICWSAMISGYAENNHPQEALKLFN 339
            ++V  T +++ YS AG ++ +R IF    +  +D + ++AMI+ Y+ N+    A++LF 
Sbjct: 77  PDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFC 136

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQ-AQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           +MQ    +PD  T  SV+ A A +   ++  Q++H  + K+  G    V NA+I  Y KC
Sbjct: 137 DMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKC 196

Query: 399 GS---------LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449
            +         +  AR++F+ M  R+ +SWT++I  +  + D   A  F N    +    
Sbjct: 197 AASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKL--- 253

Query: 450 NGVTFIGVLYACSHAGLVDEGREIFASM 477
            GV +  ++   +H GL  E  E+F  M
Sbjct: 254 -GVAWNAMISGYAHRGLYLEAFEMFRKM 280



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 14/201 (6%)

Query: 6   QPTKPLTLPTSTAISSCS---SLTHMKQTHAQILKLSHSHHSQNSLLL-KLLLTSFSLPT 61
           Q  +P     + AI SCS   SL H +Q HAQ+++  +    ++SL     L+T ++   
Sbjct: 419 QGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGY----ESSLSAGNALITMYARCG 474

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
              +    A  +F  +P   +   N  I A+    +   A+++F +ML EG+  DR SF 
Sbjct: 475 VVDA----AHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFL 530

Query: 122 PILKAIARAEGLLEGMQ-VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
            ++ A + A  + EG +    +    G   D      ++ +    GK  +A+ + + M +
Sbjct: 531 TVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPF 590

Query: 181 RDIVP-WSVMIDGYFQNGLFD 200
               P W  ++ G   +G  D
Sbjct: 591 EPGAPIWEALLAGCRIHGNID 611


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/640 (37%), Positives = 373/640 (58%), Gaps = 32/640 (5%)

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
           V N  I A++       A + + +M ++G+ ++R ++  IL A + ++ L  G  +H   
Sbjct: 297 VYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHI 356

Query: 144 TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
           ++ G  SD  +   L+ MY  CG +  AR +F  M  RD++ W+ +I GY +     E +
Sbjct: 357 SEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAM 416

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            L+++M+   V+P  +    +LSAC+ +   + G+ +HE I+ + +  + HL + L+ MY
Sbjct: 417 RLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMY 476

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
             C                               G + +A+ +F+    +D+I W++MI+
Sbjct: 477 RRC-------------------------------GSLMEAQNVFEGTQARDVISWNSMIA 505

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           G+A++   + A KLF EMQ   ++PD +T  SV+S C +   L+  ++IH  I ++    
Sbjct: 506 GHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQL 565

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
           D+ + NA+I+MY +CGSL+ AR VF  ++ R+V+SWT+MI   A  G+   A+  F +M+
Sbjct: 566 DVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQ 625

Query: 444 DESI-DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
           +E    P+G TF  +L AC+HAGLV EG +IF+SM +EY + P  EHYGC+V L GRA  
Sbjct: 626 NEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARR 685

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
            +EA  L+  MPF P+  +W +L+ ACR+HG I LAE AA   L+L+  +    +LLSN+
Sbjct: 686 FQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNV 745

Query: 563 YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
           YA   RW DV ++R+ M+ RGI KE   S IE++N ++EF+ ADRSH +T +IY +L  +
Sbjct: 746 YAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRL 805

Query: 623 ISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVC 682
             E++ AGY PD    L DL    +   +  HSE+LA+ YGLI +   + IRI KNLR+C
Sbjct: 806 SVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRIC 865

Query: 683 EDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            DCH   K +SK+  REI+ RD  RFH +K+G CSC+DYW
Sbjct: 866 GDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 148/560 (26%), Positives = 266/560 (47%), Gaps = 49/560 (8%)

Query: 1   MSTLSQPTKPLTLPTSTAIS---SCSS---LTHMKQTHAQILKLSHSHHSQNSLLLKLLL 54
           +S   QP +P     +T ++   +C+    L   K+ HAQ+++   +    +  L  LL+
Sbjct: 14  VSNTHQP-RPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVE---AGVGPDIFLSNLLI 69

Query: 55  TSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT 114
             +        S+  A  +F ++P       N  I   +     K A ++F +M N G  
Sbjct: 70  NMY----VKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI 125

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
            ++ ++  IL A      L  G ++H    K G+  DP VQ  L+ MYG CG +  AR +
Sbjct: 126 PNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQV 185

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           F  +S RD+V ++ M+  Y Q     E L LF +M    + PD++    +L A +    L
Sbjct: 186 FAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSML 245

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             G+ +H+  ++  +  D  + + L+TM   CG +D AK  F  +               
Sbjct: 246 DEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGI--------------- 290

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
                            ++D++ ++A+I+  A++ H  EA + +  M+  G+  ++ T L
Sbjct: 291 ----------------ADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYL 334

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           S+++AC+    L+  + IH +I ++    D+++ NA+I MYA+CG L  ARE+F  M +R
Sbjct: 335 SILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKR 394

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           ++ISW ++I  +A   D   A+  + +M+ E + P  VTF+ +L AC+++    +G+ I 
Sbjct: 395 DLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIH 454

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
             +     I         +++++ R   L EA  + E    A +V+ W S++A    HG 
Sbjct: 455 EDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ-ARDVISWNSMIAGHAQHGS 512

Query: 535 IELAE--FAAKQLLQLDPDH 552
            E A   F   Q  +L+PD+
Sbjct: 513 YETAYKLFQEMQNEELEPDN 532



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 187/404 (46%), Gaps = 45/404 (11%)

Query: 37  KLSHSH-----HSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRA 91
           KL HSH     HS +  +   L++ ++     P     A  +F  +P       N  I  
Sbjct: 350 KLIHSHISEDGHSSDVQIGNALISMYARCGDLPK----ARELFYTMPKRDLISWNAIIAG 405

Query: 92  ISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSD 151
            +       A++++ +M +EG+   R +F  +L A A +    +G  +H    + G  S+
Sbjct: 406 YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSN 465

Query: 152 PFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
             +   L+ MY  CG +++A+ +F+    RD++ W+ MI G+ Q+G ++    LF+EM+ 
Sbjct: 466 GHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQN 525

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
             +EPD +  + +LS C     L  G+ +H  I ++ + LD +L + LI MY  CG +  
Sbjct: 526 EELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQD 585

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
           A+ +F  +  ++++  TAM+ G   A Q ED +                           
Sbjct: 586 ARNVFHSLQHRDVMSWTAMIGGC--ADQGEDMK--------------------------- 616

Query: 332 QEALKLFNEMQVCGMK-PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG--GDLRVN 388
             A++LF +MQ  G + PD  T  S++SAC H G++ +  +I   ++ + +G    +   
Sbjct: 617 --AIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSME-SEYGVLPTIEHY 673

Query: 389 NAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD 431
             ++ +  +    + A  +  +M    +   W +++ A  IHG+
Sbjct: 674 GCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGN 717


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 252/614 (41%), Positives = 363/614 (59%), Gaps = 49/614 (7%)

Query: 121 PP---ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD---ARLM 174
           PP   IL  I +   L E  Q+     K    ++P V T L+    +   I     A  M
Sbjct: 33  PPSSSILSLIPKCTSLRELKQIQAYTIKT-HQNNPTVLTKLINFCTSNPTIASMDHAHRM 91

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLN---LFEEMKMSNVEPDEMVLSKILSACSRA 231
           FDK+   DIV ++ M  GY +   FD+ L    L  ++  S + PD+   S +L AC+R 
Sbjct: 92  FDKIPQPDIVLFNTMARGYAR---FDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARL 148

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
             L  G+ +H   +   V  + ++  TLI MY  C                         
Sbjct: 149 KALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACN------------------------ 184

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
                   V+ AR +FD++ E  ++ ++A+I+  A N+ P EAL LF E+Q  G+KP  V
Sbjct: 185 -------DVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDV 237

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           TML  +S+CA LG LD  + IH Y+ KN F   ++VN A+IDMYAKCGSL+ A  VF+ M
Sbjct: 238 TMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDM 297

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471
            RR+  +W++MI A+A HG    A+    +MK   + P+ +TF+G+LYACSH GLV+EG 
Sbjct: 298 PRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGY 357

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
           E F SMT+EY I P  +HYGCM+DL GRA  L EA + ++ +P  P  ++W +L+++C  
Sbjct: 358 EYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSS 417

Query: 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACS 591
           HG +E+A+   +++ +LD  H G  V+LSN+ A++ RW DV  LRK M ++G LK   CS
Sbjct: 418 HGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCS 477

Query: 592 RIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV---DLEDEEKR 648
            IE+NN V+EF + D  H  +  ++  L+E++ ELK AGYVPD  ++LV   D+EDEEK 
Sbjct: 478 SIEVNNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGYVPD--TSLVFYADIEDEEKE 535

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
            V+ +HSEKLA+ YGL+++   + IR+VKNLRVC DCHN  K +S ++ R+I++RD  RF
Sbjct: 536 IVLRYHSEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRF 595

Query: 709 HHYKDGVCSCKDYW 722
           HH+KDG CSC DYW
Sbjct: 596 HHFKDGKCSCGDYW 609



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 129/478 (26%), Positives = 232/478 (48%), Gaps = 42/478 (8%)

Query: 8   TKPLTLPTSTAIS---SCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP 64
           T  L  P+S+ +S    C+SL  +KQ  A  +K   +H +  ++L KL+  +F     T 
Sbjct: 28  TAALEPPSSSILSLIPKCTSLRELKQIQAYTIK---THQNNPTVLTKLI--NFCTSNPTI 82

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
           +S+ +A  +F +IP P   + N   R  +    P  A+ +  ++L  GL  D ++F  +L
Sbjct: 83  ASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLL 142

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           KA AR + L EG Q+H L  KLG G + +V   L+ MY AC  +  AR +FDK+    +V
Sbjct: 143 KACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVV 202

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            ++ +I    +N   +E L LF E++ S ++P ++ +   LS+C+  G L  G  +HE++
Sbjct: 203 AYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYV 262

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
             N       + + LI MYA CG +D                               DA 
Sbjct: 263 KKNGFDQYVKVNTALIDMYAKCGSLD-------------------------------DAV 291

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            +F  M  +D   WSAMI  YA + H  +A+ +  EM+   ++PD++T L ++ AC+H G
Sbjct: 292 SVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTG 351

Query: 365 VLDQA-QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSM 422
           ++++  +  H    +      ++    +ID+  + G LE A +  + +  +   I W ++
Sbjct: 352 LVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTL 411

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +++ + HG+   A +   ++  E  D +G  ++ +   C+  G  D+   +   M ++
Sbjct: 412 LSSCSSHGNVEMAKLVIQRIF-ELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDK 468


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 253/644 (39%), Positives = 369/644 (57%), Gaps = 36/644 (5%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I  ++ S     AL+ F  M    L   R SFP  +KA +    +  G Q H     
Sbjct: 45  NSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAFV 104

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
            G+ SD FV + L+ MY  CGK+ DAR +FD++  R+IV W+ MI GY  NG   + ++L
Sbjct: 105 FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSL 164

Query: 206 FEEMKMSNVEPD------EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259
           F+++ +   + D       M +  ++SACSR       E++H F+I         + +TL
Sbjct: 165 FKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTL 224

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWS 319
           +  YA  G                              G V  AR IFDQ+V+KD + ++
Sbjct: 225 LDAYAKGG-----------------------------EGGVAVARKIFDQIVDKDRVSYN 255

Query: 320 AMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +++S YA++    EA  +F  + +   +  + +T+ +V+ A +H G L   + IH  + +
Sbjct: 256 SIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIR 315

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
                D+ V  +IIDMY KCG +E+AR  F+RM+ +NV SWT+MI  + +HG A  AL  
Sbjct: 316 MGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALEL 375

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F  M D  + PN +TF+ VL ACSHAGL D G   F +M   + + P  EHYGCMVDL G
Sbjct: 376 FPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLG 435

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558
           RA  L++A +L++ M   P+ +IW SL+AACR+H  +ELAE +  +L +LDP + G  +L
Sbjct: 436 RAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYML 495

Query: 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEK 618
           LS+IYA   RW+DV  +R +MK RG++K    S +E+N EV+ FL  D  H Q ++IYE 
Sbjct: 496 LSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEF 555

Query: 619 LNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKN 678
           L E+  +L  AGYV +  S   D+++EEK   +  HSEKLA+ +G++++   S + +VKN
Sbjct: 556 LAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKN 615

Query: 679 LRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LRVC DCHN IKL+SK+  RE V+RD  RFHH+KDG CSC DYW
Sbjct: 616 LRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 10/152 (6%)

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
           + +V SW S+I   A  GD+  AL  F+ M+  S+ P   +F   + ACS    +  G++
Sbjct: 38  KTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQ 97

Query: 473 IFASMTNEYNIPPKYEH----YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
                T++      Y+        ++ ++     L +A ++ + +P   N+V W S++  
Sbjct: 98  -----THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRNIVSWTSMIRG 151

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560
             ++G    A    K LL  + D D  + L S
Sbjct: 152 YDLNGNALDAVSLFKDLLIEENDDDATMFLDS 183


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/612 (40%), Positives = 370/612 (60%), Gaps = 9/612 (1%)

Query: 112 GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA 171
            LT DR +   +L A + A       ++H    + G  SD  V   L   Y A G++  +
Sbjct: 21  ALTADRAA--SLLAACSTAR---RASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHS 75

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
             +  +      + ++  I  +   GL    L L  +M    + P    LS  L AC   
Sbjct: 76  LTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACR-- 133

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
             LS G A+H +     ++ D+++ + L++MYA  G    A+ LFD++   ++V  TAM+
Sbjct: 134 -GLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAML 192

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
           + Y+  G ++DAR +FD +  KD ICW+AMI GY ++  P EAL+LF  M     +PD+V
Sbjct: 193 TCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEV 252

Query: 352 TMLSVISACAHLGVLDQAQRIHLYI-DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           T++ V+SA A LG ++  + +H Y+ +      ++RV  A++DMY KCGSLE A  VF  
Sbjct: 253 TVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHG 312

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           +  ++++ W +MIN +A+HGD+R AL  F +++D+ + P  +TFIG+L ACSH+GLV+EG
Sbjct: 313 IGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEG 372

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
           R  F SM +EY I PK EHYGCMVDL GRA L+ EA  LV+++   P+ V+W SL+AACR
Sbjct: 373 RSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACR 432

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
           +H  + L +  A  L+     + G  +LLSNIYA   +W++V  +R  MK  GI KE  C
Sbjct: 433 LHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGC 492

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
           S IE++ +VYEF+  D SH  TD+IY  L+++ + +K  G+VP     L DL++  K + 
Sbjct: 493 SAIEIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKA 552

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           +  HSEKLA+ +GLISS+  S I+IVKNLR C DCH  +KL+SK+ +R+IV RDR RFHH
Sbjct: 553 LAVHSEKLAVAFGLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHH 612

Query: 711 YKDGVCSCKDYW 722
           + DG C+C DYW
Sbjct: 613 FVDGSCTCGDYW 624



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 6/186 (3%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F  +P       N  I   +   +P  AL++F +ML      D  +   +L A+A+
Sbjct: 204 ARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQ 263

Query: 130 AEGLLEGMQVHG-LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
              +  G  +H  +        +  V T LV MY  CG + DA  +F  +  +DIV W+ 
Sbjct: 264 LGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNA 323

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV-----HEF 243
           MI+GY  +G   + L +F +++   + P ++    +L+ACS +G +  G +      HE+
Sbjct: 324 MINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEY 383

Query: 244 IIDNNV 249
            ID  +
Sbjct: 384 GIDPKI 389


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/507 (45%), Positives = 326/507 (64%)

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           PD    + ++   ++      G +VH   +      D H+QS LI MYA  G +D    +
Sbjct: 109 PDNYTFTFLVRTSAQLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRV 168

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           F  +   +LV  TAMVS  ++ G V  AR +FD+M  KD I W+AMISGY +    +EAL
Sbjct: 169 FSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREAL 228

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
            LFN MQ  G+K ++V+M+SV+SAC+HLG LDQ +  H YI++N     L +  A+IDMY
Sbjct: 229 SLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMY 288

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           AKCG++  A EVF  M+ +NV +W+S I   A++G     L  F+ MK +S+ PN +TF+
Sbjct: 289 AKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFV 348

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
            VL  CS  GLV+EGR+ F SM+  Y I P+ EHYGCMVDL+GRA  L EAL  + +MP 
Sbjct: 349 SVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPV 408

Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575
            P+V  WG+L+ AC+++  +E+ E A++++++L+  + GA VLLSNIYA  K W  V  +
Sbjct: 409 RPHVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNV 468

Query: 576 RKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
           R++M  +G+ K+  CS IE+  EV+EF   D+SH +  +I   L E+   LK +GYV + 
Sbjct: 469 RQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVANT 528

Query: 636 HSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKV 695
           +    D+E+EEK + +  HSEK+A+ +GLIS   D  IRIVKNLRVC DCH+  K++SK 
Sbjct: 529 NPVFFDIEEEEKEDALCMHSEKIAIAFGLISLSPDVPIRIVKNLRVCWDCHDATKMISKA 588

Query: 696 YAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + REIV+RDR RFHH++DG CSCK YW
Sbjct: 589 FNREIVVRDRNRFHHFRDGECSCKGYW 615



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 211/452 (46%), Gaps = 73/452 (16%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           PT + +  C++L  +KQ H Q+L     +  Q   L+   + S +L    P++L+Y+  +
Sbjct: 11  PTISMVEPCTTLRELKQIHTQLLINGLLNDPQ---LVGQFVASIAL--NNPNNLHYSNQV 65

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG--LTIDRFSFPPILKAIARAE 131
                 P     N  IRA S S  P  +   + ++L+    L  D ++F  +++  A+  
Sbjct: 66  LDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLL 125

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYG---------------------------- 163
               G  VHG   K GF  DP VQ+GL+ MY                             
Sbjct: 126 AHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVS 185

Query: 164 ACGKILD---ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           AC K+ D   AR +FDKMS++D + W+ MI GY Q G   E L+LF  M+   V+ +E+ 
Sbjct: 186 ACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVS 245

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           +  +LSACS  G L  G   H +I  N + +   L + LI MYA CG M+          
Sbjct: 246 MVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMN---------- 295

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                                 A  +F  M EK++  WS+ I G A N   ++ L+LF+ 
Sbjct: 296 ---------------------KAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSL 334

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKC 398
           M+   ++P+++T +SV+  C+ +G++++ ++ H       +G + R+ +   ++D+Y + 
Sbjct: 335 MKQDSVQPNEITFVSVLRGCSVVGLVEEGRK-HFESMSKVYGIEPRLEHYGCMVDLYGRA 393

Query: 399 GSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           G L+ A      M  R +V +W +++NA  I+
Sbjct: 394 GHLDEALNFINSMPVRPHVGAWGALLNACKIY 425



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 135/317 (42%), Gaps = 43/317 (13%)

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY------SRAGQVEDARLIFDQMVEK 313
           I+M   C  +   K +  ++L+  L+    +V  +      +    +  +  + D     
Sbjct: 13  ISMVEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNSQNP 72

Query: 314 DLICWSAMISGYAENNHPQEALKLFNE-MQVCG-MKPDKVTMLSVISACAHLGVLDQAQR 371
            L  +++MI  +++++ P  +   ++  +   G + PD  T   ++   A L        
Sbjct: 73  TLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSS 132

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES---------------------------- 403
           +H    K  F  D  V + +I MYA+ G L++                            
Sbjct: 133 VHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGD 192

Query: 404 ---AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
              AR++F++M  ++ I+W +MI+ +   G +R AL  FN M+ E +  N V+ + VL A
Sbjct: 193 VGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSA 252

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYG-CMVDLFGRANLLREALELVETMPFAPNV 519
           CSH G +D+GR  +A    E N        G  ++D++ +   + +A+E+   M    NV
Sbjct: 253 CSHLGALDQGR--WAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMK-EKNV 309

Query: 520 VIWGSLMAACRVHGEIE 536
             W S +    ++G  E
Sbjct: 310 YTWSSAIGGLAMNGAGE 326


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/624 (38%), Positives = 357/624 (57%), Gaps = 36/624 (5%)

Query: 100 HALKVFLKMLNEGLTIDRFSFPPILKAIAR-AEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           HAL++   + N        +FP  LK+ +R    L  G Q+H    KL   ++P V T L
Sbjct: 104 HALRLHCLLPNP----SHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSL 159

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + +Y  CG +  A+ +FD+M +   V W+ +I  Y   G   E +++      + + PD 
Sbjct: 160 LTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDS 219

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
               ++L+AC+R  +L+ GE V        +A                            
Sbjct: 220 FTAVRVLTACARVADLATGETVWRAAEQEGIA---------------------------- 251

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
              +++ V+TA V  Y + G++  AR +FD+M +KD + W AM+ GYA N HP+EAL LF
Sbjct: 252 ---QSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLF 308

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
             MQ  G++PD   +   +SAC  LG LD  ++    +D + F  +  +  A+IDMYAKC
Sbjct: 309 LAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKC 368

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           GS   A  VF++MR++++I W +MI    + G  + A     +M+   +  N  TFIG+L
Sbjct: 369 GSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLL 428

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            +C+H GL+ +GR  F +MT  Y+I P+ EHYGC+VDL  RA LL+EA +L++ MP   N
Sbjct: 429 CSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPAN 488

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
            VI G+L+  C++H   ELAE    QL++L+P + G  V+LSNIY+   RW+D  +LR  
Sbjct: 489 AVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLD 548

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           MKE+G+ K  ACS +E   +V+EF   D+SH  +DQIY+KL+E+  E+K  GY P     
Sbjct: 549 MKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVV 608

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           + D+EDEEK   ++ HSEKLA+ + L+ +     IR+ KNLRVC DCH  IKL+S++  R
Sbjct: 609 MFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHR 668

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EI++RD  RFH ++DG CSC DYW
Sbjct: 669 EIIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 188/441 (42%), Gaps = 59/441 (13%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHM----KQTHAQILKL-SHSHHSQNSLLLKLLLTSFS 58
           L  P+  LT P   A+ S S L H     +Q HA+ LKL SH+    N  +L  LLT ++
Sbjct: 112 LPNPSH-LTFPI--ALKSASRLPHPLRAGEQLHARSLKLPSHT----NPHVLTSLLTLYA 164

Query: 59  LPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
                   L+ A  +F ++P P +      I A   +   + A+ V       G+  D F
Sbjct: 165 ----RCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSF 220

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +   +L A AR   L  G  V     + G     FV T  V +Y  CG++  AR +FDKM
Sbjct: 221 TAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKM 280

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
             +D V W  M+ GY  NG   E L+LF  M+   V PD   ++  LSAC+R G L  G 
Sbjct: 281 RDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGR 340

Query: 239 AVHEFI-----IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
                +     +DN V     L + LI MYA CG    A  +F ++  K+++V  AM+ G
Sbjct: 341 QAIRMVDWDEFLDNPV-----LGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILG 395

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
               G                               H + A  L  +M+  G+K +  T 
Sbjct: 396 LGMTG-------------------------------HEKTAFTLIGQMEKSGVKLNDNTF 424

Query: 354 LSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM- 411
           + ++ +C H G++   +R  H           +     I+D+ ++ G L+ A ++ + M 
Sbjct: 425 IGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMP 484

Query: 412 RRRNVISWTSMINAFAIHGDA 432
              N +   +++    IH +A
Sbjct: 485 MPANAVILGALLGGCKIHRNA 505



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 114/257 (44%), Gaps = 9/257 (3%)

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           P+ AL +FL M  EG+  D ++    L A  R   L  G Q   +     F  +P + T 
Sbjct: 301 PREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTA 360

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+ MY  CG   +A ++F +M  +DI+ W+ MI G    G       L  +M+ S V+ +
Sbjct: 361 LIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLN 420

Query: 218 EMVLSKILSACSRAGNLSYGEA-VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           +     +L +C+  G +  G    H      +++        ++ + +  G +  A  L 
Sbjct: 421 DNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLI 480

Query: 277 DKV-LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA----MISG-YAENNH 330
           D + +  N V+  A++ G       E A  +  Q++   L  W++    M+S  Y+    
Sbjct: 481 DDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIR--LEPWNSGNYVMLSNIYSNRGR 538

Query: 331 PQEALKLFNEMQVCGMK 347
            ++A KL  +M+  G++
Sbjct: 539 WEDAAKLRLDMKEKGVE 555


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/594 (41%), Positives = 354/594 (59%), Gaps = 32/594 (5%)

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           R   +    QVH      G   D  +   L+  Y     I DA  +FD ++ RD   WSV
Sbjct: 12  RCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSV 71

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           M+ G+ + G        F E+    V PD   L  ++  C    +L  G  +H+ ++ + 
Sbjct: 72  MVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHG 131

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           +  D  + ++L+ MYA C                  +V             VEDA+ +F+
Sbjct: 132 LLSDHFVCASLVDMYAKC------------------IV-------------VEDAQRLFE 160

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           +M+ KDL+ W+ MI  YA+ N   E+L LF+ M+  G+ PDKV M++V++ACA LG + +
Sbjct: 161 RMLSKDLVTWTVMIGAYADCN-AYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHR 219

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
           A+  + YI +N F  D+ +  A+IDMYAKCGS+ESAREVF+RM+ +NVISW++MI A+  
Sbjct: 220 ARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGY 279

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG  ++A+  F+ M   +I PN VTF+ +LYACSHAGL++EG   F SM  E+ + P  +
Sbjct: 280 HGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVK 339

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HY CMVDL GRA  L EAL L+E M    +  +W +L+ ACR+H ++ELAE AA  LL+L
Sbjct: 340 HYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLEL 399

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
            P + G  VLLSNIYAK  +W+ V + R  M +R + K    + IE++N+ Y+F   DRS
Sbjct: 400 QPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRS 459

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
           H Q+ +IYE L  +I +L+ AGYVPD    L D+E+E K+E++  HSEKLA+ +GLI+  
Sbjct: 460 HPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIP 519

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +   IRI KNLRVC DCH F K+VS +  R I++RD  RFHH+ DG CSC DYW
Sbjct: 520 EGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 202/411 (49%), Gaps = 43/411 (10%)

Query: 22  CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP-SSLYYALSIFSQIPAP 80
           C ++ H++Q HA ++         N  L  L++ +  L T     ++  A S+F  +   
Sbjct: 13  CRNVFHIRQVHAHVV--------ANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMR 64

Query: 81  PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVH 140
            S+  +  +   + +         F ++L  G+T D ++ P +++       L  G  +H
Sbjct: 65  DSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIH 124

Query: 141 GLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
            +  K G  SD FV   LV MY  C  + DA+ +F++M  +D+V W+VMI  Y     + 
Sbjct: 125 DVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAY- 183

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
           E L LF+ M+   V PD++ +  +++AC++ G +      +++I+ N  +LD  L + +I
Sbjct: 184 ESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMI 243

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
            MYA CG ++ A+ +FD++  KN++  +AM++ Y   G+ +D                  
Sbjct: 244 DMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKD------------------ 285

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKN 379
                        A+ LF+ M  C + P++VT +S++ AC+H G++++  R  +   +++
Sbjct: 286 -------------AIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEH 332

Query: 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           A   D++    ++D+  + G L+ A  + E M   ++   W++++ A  IH
Sbjct: 333 AVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIH 383


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/627 (38%), Positives = 375/627 (59%), Gaps = 34/627 (5%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + ALK+F +M  EG+  + F+F  +L  +A    + +G+QVH +  K G  S  FV   +
Sbjct: 175 EQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSM 234

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           V MY     + DA+ +FD M  R+ V W+ MI G+  NGL  E   LF  M++  V+  +
Sbjct: 235 VNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQ 294

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
            + + ++  C+    +S+ + +H  +I N    D                          
Sbjct: 295 TIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFD-------------------------- 328

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE-KDLICWSAMISGYAENNHPQEALKL 337
                L + TA++  YS+  +++DA  +F  M   ++++ W+A+ISGY +N     A+ L
Sbjct: 329 -----LNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNL 383

Query: 338 FNEMQVC-GMKPDKVTMLSVISACAH-LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           F +M+   G++P++ T  SV++ACA     ++Q ++ H    K+ F   L V++A++ MY
Sbjct: 384 FCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMY 443

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           AK G++ESA EVF+R   R+++SW SMI+ +A HG  + +L  F +M+ ++++ +G+TFI
Sbjct: 444 AKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFI 503

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
           GV+ AC+HAGLV+EG+  F  M  +Y+I P  EHY CMVDL+ RA +L +A++L+  MPF
Sbjct: 504 GVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPF 563

Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575
                IW +L+AACRVH  ++L E AA++L+ L P    A VLLSNIYA    WQ+  ++
Sbjct: 564 PAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKV 623

Query: 576 RKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
           RK M  + + KE   S IE+ N+ + F+  D SH Q+D+IY KL E+   LK AGY PD 
Sbjct: 624 RKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDT 683

Query: 636 HSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKV 695
              L D+E+E K  ++  HSE+LA+ +GLI++   + I+IVKNLRVC DCH  IKL+SK+
Sbjct: 684 KYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKI 743

Query: 696 YAREIVIRDRTRFHHYKDGVCSCKDYW 722
             R+IV+RD  RFHH+K G CSC DYW
Sbjct: 744 EGRDIVVRDSNRFHHFKGGSCSCGDYW 770



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 177/371 (47%), Gaps = 38/371 (10%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           ++ +FD+   + +   + ++  + +N    E LNLF  ++ S    D   LS +L  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
             +   G+ VH                        C C+           ++++ V T++
Sbjct: 105 LFDRIVGKQVH------------------------CQCIKCG-------FVEDVSVGTSL 133

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           V  Y +   VED   +FD+M  K+++ W+++++GY +N   ++ALKLF++MQ+ G+KP+ 
Sbjct: 134 VDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNP 193

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
            T  +V+   A  G +++  ++H  + K+     + V N++++MY+K   +  A+ VF+ 
Sbjct: 194 FTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDS 253

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M  RN +SW SMI  F  +G    A   F +M+ E +      F  V+  C++   +   
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFA 313

Query: 471 REIFASMT---NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
           +++   +    +++++  K      ++  + + + + +A +L   M    NVV W ++++
Sbjct: 314 KQLHCQVIKNGSDFDLNIKT----ALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIIS 369

Query: 528 ACRVHGEIELA 538
               +G  + A
Sbjct: 370 GYVQNGRTDRA 380



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 145/292 (49%), Gaps = 14/292 (4%)

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           ++ +FD+  ++ L   + ++  ++ N+  +EAL LF  ++  G   D  ++  V+  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           L      +++H    K  F  D+ V  +++DMY K  S+E    VF+ MR +NV+SWTS+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           +  +  +G    AL  F++M+ E I PN  TF  VL   +  G V++G ++  +M  +  
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVH-TMVIKSG 223

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           +         MV+++ ++ ++ +A  + ++M    N V W S++A    +G ++L  F  
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAGFVTNG-LDLEAFEL 281

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
              ++L+      + L   I+A       V +L  ++KE    K+  C  I+
Sbjct: 282 FYRMRLE-----GVKLTQTIFAT------VIKLCANIKEMSFAKQLHCQVIK 322


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/628 (39%), Positives = 373/628 (59%), Gaps = 38/628 (6%)

Query: 3   TLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKL-LLTSFSLPT 61
           TL     P  L   + + +C S+  +KQ HA I+K   S  +Q ++  +L  L + SLP 
Sbjct: 13  TLPHDFNPHKLSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPI 72

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPK-HALKVFLKMLNEGLTIDRFSF 120
                  YALS+ +Q+  P   + N  IR ++ S+      L V+ +ML++G+  D ++ 
Sbjct: 73  DP----RYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTI 128

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
           P +LKA A +  + EG +VHG   K+G  SD +V   L+ MY  C  I  AR +FD    
Sbjct: 129 PFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQ 188

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           RD+V W+ MI GY + G   E + LF EM   N++ D M L  +LS+C+R G+L  G  +
Sbjct: 189 RDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKL 248

Query: 241 HEFIIDN-NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           H +II N NV LD  + + L+ MY  C                               G 
Sbjct: 249 HRYIIRNSNVNLDVFVGNALVDMYLKC-------------------------------GD 277

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
              AR +F +M  K+++ W++MISG A+    +E+L +F +MQ  G+KPD VT+++V+++
Sbjct: 278 ANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNS 337

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           CA+LGVL+  + +H Y+D+N    D  + NA++DMYAKCGS++ A  VF+ M R++V S+
Sbjct: 338 CANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSY 397

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           T+MI   A+HG    AL  F++M    I+P+ VTF+GVL ACSH GLV+EGR+ F  M+ 
Sbjct: 398 TAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMST 457

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
            YN+ P+ EHYGCMVDL GRA L+ EA E +  MP  P+  + G+L+ AC++HG++EL E
Sbjct: 458 IYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGE 517

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
              K++ +++P  DGA VL+SNIY+   RW+D  +LRK+MKER + K   CS IE++  +
Sbjct: 518 SVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVI 577

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELK 627
           +EF   D+SH +  +IY+ L+E++S LK
Sbjct: 578 HEFQKGDKSHPKIKEIYKLLDEIMSHLK 605


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 263/720 (36%), Positives = 395/720 (54%), Gaps = 47/720 (6%)

Query: 9   KPLTLPTSTAISSCSSL---THMKQTHAQILKLSHSH--HSQNSLLLKLLLTSFSLPTTT 63
           KP     S+ +++C+ L   +  K  H  ++KL +     S N+L+              
Sbjct: 255 KPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMY---------AK 305

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
              L  A+S+F +I  P     N  I         + AL++  +M   G+  + F+    
Sbjct: 306 VGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSA 365

Query: 124 LKAIARAEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           LKA A   GL E G Q+H    K+   SD FV  GLV MY  C  + DAR+ F+ +  +D
Sbjct: 366 LKACA-GMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKD 424

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           ++ W+ +I GY Q     E L+LF EM    +  ++  LS IL + +    +     VH 
Sbjct: 425 LIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHG 484

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
             + +    D ++ ++LI  Y  C                                 VED
Sbjct: 485 LSVKSGFHSDIYVVNSLIDSYGKCS-------------------------------HVED 513

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           A  IF++    DL+ +++MI+ YA+    +EALKLF EMQ   +KPD+    S+++ACA+
Sbjct: 514 AERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACAN 573

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           L   +Q +++H++I K  F  D+   N++++MYAKCGS++ A   F  +  R ++SW++M
Sbjct: 574 LSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAM 633

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I   A HG  R AL  FN+M  E + PN +T + VL AC+HAGLV E +  F SM   + 
Sbjct: 634 IGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFG 693

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
             P  EHY CM+DL GRA  + EA+ELV  MPF  N  +WG+L+ A R+H ++EL   AA
Sbjct: 694 FKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAA 753

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           + L  L+P+  G  VLL+NIYA   +W++V E+R+ M++  + KE   S IE+ ++VY F
Sbjct: 754 EMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTF 813

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
           L  DRSH ++ +IY KL+E+   +  AGYVP +   L D+E  EK  ++  HSEKLA+ +
Sbjct: 814 LVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAF 873

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           GLI++ + + IR+ KNLRVC DCH   K + K+ +REI++RD  RFHH+KDG CSC DYW
Sbjct: 874 GLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 225/450 (50%), Gaps = 37/450 (8%)

Query: 81  PSRVSNKFIRAI-SWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLEGMQ 138
           P + + K I+ +  +S  P+      L ++++G  T    S+  +L      + L  G+Q
Sbjct: 20  PFKPAPKLIQTVPQFSQDPQ--TTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQ 77

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H   TK G   DP ++  L+ +Y  C     AR + D+ S  D+V WS +I GY QNGL
Sbjct: 78  IHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGL 137

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
               L  F EM +  V+ +E   S +L ACS   +L  G+ VH  ++ +    D  + +T
Sbjct: 138 GGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANT 197

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           L+ MYA C          D+ L                     D++ +FD++ E++++ W
Sbjct: 198 LVVMYAKC----------DEFL---------------------DSKRLFDEIPERNVVSW 226

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +A+ S Y + +   EA+ LF EM + G+KP++ ++ S+++AC  L    + + IH Y+ K
Sbjct: 227 NALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIK 286

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
             +  D    NA++DMYAK G L  A  VFE++++ +++SW ++I    +H     AL  
Sbjct: 287 LGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALEL 346

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
             +MK   I PN  T    L AC+  GL + GR++ +S+         +   G +VD++ 
Sbjct: 347 LGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVG-LVDMYS 405

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAA 528
           + +LL +A      +P   +++ W ++++ 
Sbjct: 406 KCDLLEDARMAFNLLP-EKDLIAWNAIISG 434



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 134/467 (28%), Positives = 220/467 (47%), Gaps = 61/467 (13%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A+ +F +M+  G+  + FS   ++ A         G  +HG   KLG+  DPF    LV 
Sbjct: 242 AVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVD 301

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY   G + DA  +F+K+   DIV W+ +I G   +   ++ L L  +MK S + P+   
Sbjct: 302 MYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFT 361

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           LS  L AC+  G    G  +H  ++                       MDM   LF    
Sbjct: 362 LSSALKACAGMGLKELGRQLHSSLMK----------------------MDMESDLF---- 395

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                VS  +V  YS+   +EDAR+ F+ + EKDLI W+A+ISGY++     EAL LF E
Sbjct: 396 -----VSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVE 450

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M   G+  ++ T+ +++ + A L V+   +++H    K+ F  D+ V N++ID Y KC  
Sbjct: 451 MHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSH 510

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E A  +FE     +++S+TSMI A+A +G    AL  F +M+D  + P+      +L A
Sbjct: 511 VEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNA 570

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL-------------REAL 507
           C++    ++G+++   +            YG ++D+F   +L+             R   
Sbjct: 571 CANLSAFEQGKQLHVHILK----------YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFS 620

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ--LDPDH 552
           EL E       +V W +++     HG    A     Q+L+  + P+H
Sbjct: 621 ELTER-----GIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNH 662



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 141/547 (25%), Positives = 262/547 (47%), Gaps = 45/547 (8%)

Query: 10  PLTLPTSTAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P ++  S  +S C +   ++   Q HA I K   S  S +  +   L+  +S       +
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITK---SGLSDDPSIRNHLINLYS----KCRN 106

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
             YA  +  +   P     +  I   + +     AL  F +M   G+  + F+F  +LKA
Sbjct: 107 FGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKA 166

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            +  + L  G QVHG+    GF  D FV   LV MY  C + LD++ +FD++  R++V W
Sbjct: 167 CSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSW 226

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +   Y Q     E + LF EM +S ++P+E  LS +++AC+   + S G+ +H ++I 
Sbjct: 227 NALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIK 286

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
                D    + L+ MYA  G  D+A                             DA  +
Sbjct: 287 LGYDWDPFSANALVDMYAKVG--DLA-----------------------------DAISV 315

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F+++ + D++ W+A+I+G   + H ++AL+L  +M+  G+ P+  T+ S + ACA +G+ 
Sbjct: 316 FEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLK 375

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           +  +++H  + K     DL V+  ++DMY+KC  LE AR  F  +  +++I+W ++I+ +
Sbjct: 376 ELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGY 435

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           + + +   AL  F +M  E I  N  T   +L + +   +V   R++   ++ +      
Sbjct: 436 SQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHG-LSVKSGFHSD 494

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQ 544
                 ++D +G+ + + +A  + E      ++V + S++ A   +G+ E  L  F   Q
Sbjct: 495 IYVVNSLIDSYGKCSHVEDAERIFEECTIG-DLVSFTSMITAYAQYGQGEEALKLFLEMQ 553

Query: 545 LLQLDPD 551
            ++L PD
Sbjct: 554 DMELKPD 560



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 165/341 (48%), Gaps = 44/341 (12%)

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
           +LNL ++    N  P  +  SK+LS C    +L  G  +H  I  + ++ D  +++ LI 
Sbjct: 43  ILNLIDK---GNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLIN 99

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
           +Y+ C               +N         GY        AR + D+  E DL+ WSA+
Sbjct: 100 LYSKC---------------RNF--------GY--------ARKLVDESSEPDLVSWSAL 128

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF 381
           ISGYA+N     AL  F+EM + G+K ++ T  SV+ AC+ +  L   +++H  +  + F
Sbjct: 129 ISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGF 188

Query: 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNK 441
            GD+ V N ++ MYAKC     ++ +F+ +  RNV+SW ++ + +        A+  F +
Sbjct: 189 EGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYE 248

Query: 442 MKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE----HYGCMVDLF 497
           M    I PN  +   ++ AC+  GL D  R     + + Y I   Y+        +VD++
Sbjct: 249 MVLSGIKPNEFSLSSMVNACT--GLRDSSR---GKIIHGYLIKLGYDWDPFSANALVDMY 303

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
            +   L +A+ + E +   P++V W +++A C +H   E A
Sbjct: 304 AKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQA 343


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/624 (38%), Positives = 357/624 (57%), Gaps = 36/624 (5%)

Query: 100 HALKVFLKMLNEGLTIDRFSFPPILKAIAR-AEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           HAL++   + N        +FP  LK+ +R    L  G Q+H    KL   ++P V T L
Sbjct: 57  HALRLHCLLPNP----SHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSL 112

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + +Y  CG +  A+ +FD+M +   V W+ +I  Y   G   E +++      + + PD 
Sbjct: 113 LTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDS 172

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
               ++L+AC+R  +L+ GE V        +A                            
Sbjct: 173 FTAVRVLTACARVADLATGETVWRAAEQEGIA---------------------------- 204

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
              +++ V+TA V  Y + G++  AR +FD+M +KD + W AM+ GYA N HP+EAL LF
Sbjct: 205 ---QSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLF 261

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
             MQ  G++PD   +   +SAC  LG LD  ++    +D + F  +  +  A+IDMYAKC
Sbjct: 262 LAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKC 321

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           GS   A  VF++MR++++I W +MI    + G  + A     +M+   +  N  TFIG+L
Sbjct: 322 GSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLL 381

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            +C+H GL+ +GR  F +MT  Y+I P+ EHYGC+VDL  RA LL+EA +L++ MP   N
Sbjct: 382 CSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPAN 441

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
            VI G+L+  C++H   ELAE    QL++L+P + G  V+LSNIY+   RW+D  +LR  
Sbjct: 442 AVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLD 501

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           MKE+G+ K  ACS +E   +V+EF   D+SH  +DQIY+KL+E+  E+K  GY P     
Sbjct: 502 MKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVV 561

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           + D+EDEEK   ++ HSEKLA+ + L+ +     IR+ KNLRVC DCH  IKL+S++  R
Sbjct: 562 MFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHR 621

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EI++RD  RFH ++DG CSC DYW
Sbjct: 622 EIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 188/441 (42%), Gaps = 59/441 (13%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHM----KQTHAQILKL-SHSHHSQNSLLLKLLLTSFS 58
           L  P+  LT P   A+ S S L H     +Q HA+ LKL SH+    N  +L  LLT ++
Sbjct: 65  LPNPSH-LTFPI--ALKSASRLPHPLRAGEQLHARSLKLPSHT----NPHVLTSLLTLYA 117

Query: 59  LPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
                   L+ A  +F ++P P +      I A   +   + A+ V       G+  D F
Sbjct: 118 ----RCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSF 173

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +   +L A AR   L  G  V     + G     FV T  V +Y  CG++  AR +FDKM
Sbjct: 174 TAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKM 233

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
             +D V W  M+ GY  NG   E L+LF  M+   V PD   ++  LSAC+R G L  G 
Sbjct: 234 RDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGR 293

Query: 239 AVHEFI-----IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
                +     +DN V     L + LI MYA CG    A  +F ++  K+++V  AM+ G
Sbjct: 294 QAIRMVDWDEFLDNPV-----LGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILG 348

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
               G                               H + A  L  +M+  G+K +  T 
Sbjct: 349 LGMTG-------------------------------HEKTAFTLIGQMEKSGVKLNDNTF 377

Query: 354 LSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM- 411
           + ++ +C H G++   +R  H           +     I+D+ ++ G L+ A ++ + M 
Sbjct: 378 IGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMP 437

Query: 412 RRRNVISWTSMINAFAIHGDA 432
              N +   +++    IH +A
Sbjct: 438 MPANAVILGALLGGCKIHRNA 458



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 114/257 (44%), Gaps = 9/257 (3%)

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           P+ AL +FL M  EG+  D ++    L A  R   L  G Q   +     F  +P + T 
Sbjct: 254 PREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTA 313

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+ MY  CG   +A ++F +M  +DI+ W+ MI G    G       L  +M+ S V+ +
Sbjct: 314 LIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLN 373

Query: 218 EMVLSKILSACSRAGNLSYGEA-VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           +     +L +C+  G +  G    H      +++        ++ + +  G +  A  L 
Sbjct: 374 DNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLI 433

Query: 277 DKV-LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA----MISG-YAENNH 330
           D + +  N V+  A++ G       E A  +  Q++   L  W++    M+S  Y+    
Sbjct: 434 DDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIR--LEPWNSGNYVMLSNIYSNRGR 491

Query: 331 PQEALKLFNEMQVCGMK 347
            ++A KL  +M+  G++
Sbjct: 492 WEDAAKLRLDMKEKGVE 508


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 245/609 (40%), Positives = 371/609 (60%), Gaps = 8/609 (1%)

Query: 11  LTLPTSTAISSCSSLTHMKQTHAQI-LKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYY 69
           +T PT   + SCS++  +KQ  A++ L    +H    S ++     + S        L+Y
Sbjct: 156 ITNPTLLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHS------GDLHY 209

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A +IF+++  P + + N  IR    + +P  A   F+ M    + +D  SF   LKA  +
Sbjct: 210 AHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQ 269

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            E + EG  V+ +  K+GF  +  V+ GL+  Y   G + +AR +FD+ S +D+V W+ M
Sbjct: 270 FETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTM 329

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           IDGY  +   +E + +FE M +S+VEP+E+ L  ++SACS  GNL  G+ VHE + + N+
Sbjct: 330 IDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNM 389

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                L + L+ MY  C C+  A+ LFD++  K++   T+MV+GY++ G +E AR  FDQ
Sbjct: 390 RCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQ 449

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
              K+ +CWSAMI+GY++NN P+E+LKLF+EM   G+ P + T++SV+SAC  L  L+  
Sbjct: 450 TPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLG 509

Query: 370 QRIHLY-IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
             IH Y +        + + NAI+DMYAKCGS+++A EVF  M  RN+ISW +MI  +A 
Sbjct: 510 DWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAA 569

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           +G A+ A+  F++M++   +PN +TF+ +L ACSH GL+ EGRE F +M  +Y I P+  
Sbjct: 570 NGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERG 629

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HY CMVDL GR  LL EA +L+  MP  P    WG+L+ ACR+HG +ELA  +A  LL+L
Sbjct: 630 HYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRL 689

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           DP+  G  VLL+N  A D++W DV  +R  MK++G+ K    S IE++    EFL AD S
Sbjct: 690 DPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEIDGGFVEFLVADES 749

Query: 609 HKQTDQIYE 617
           H Q+++IY+
Sbjct: 750 HPQSEEIYK 758


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/725 (36%), Positives = 399/725 (55%), Gaps = 47/725 (6%)

Query: 4   LSQPTKPLTLPTSTAISSCSSL---THMKQTHAQILKLSHSH--HSQNSLLLKLLLTSFS 58
           +S    P     ST +++C+ L    +  + H  ++KL +     S N+LL         
Sbjct: 180 ISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALL------DMY 233

Query: 59  LPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
             +  P +   A+++F +IP P     N  I       +   ALK+  KM +  +    F
Sbjct: 234 AKSGCPEA---AIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMF 290

Query: 119 SFPPILKAIARAEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
           +    LKA A A GL++ G Q+H    K+    D FV  GL+ MY  CG + DAR++FD 
Sbjct: 291 TLSSALKACA-AIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDL 349

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           M  +D++ W+ +I GY   G   E ++LF  M    +E ++  LS IL + + +    + 
Sbjct: 350 MPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFC 409

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
           E VH   I +    D ++ ++L+  Y  C C+                            
Sbjct: 410 EQVHTISIKSGYQYDGYVANSLLDSYGKC-CL---------------------------- 440

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
             +EDA  +F+    +DL+ +++MI+ Y++    +EALK++  MQ   +KPD     S+ 
Sbjct: 441 --LEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLF 498

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
           +ACA+L   +Q ++IH+++ K     D+   N++++MYAKCGS++ A  +F  +  R ++
Sbjct: 499 NACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIV 558

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
           SW++MI   A HG  R AL  F +M    I PN +T + VL AC+HAGLV E R  F  M
Sbjct: 559 SWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLM 618

Query: 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537
              + I P  EHY CMVD+ GR   L EA+ LV+ MPF  +  +WG+L+ A R+H  IEL
Sbjct: 619 EKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIEL 678

Query: 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNN 597
              AA+ LL L+P+  G  +LL+NIYA    W +V ++R+SMK   + KE   S IE+ +
Sbjct: 679 GRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKD 738

Query: 598 EVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEK 657
           +VY F+  DRSH ++ +IY KL+++   L  AGYVP I + L D+E  EK +++  HSEK
Sbjct: 739 KVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEK 798

Query: 658 LALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCS 717
           LA+ +GLI++   + IR+ KNLRVC DCH   K +SKV +REI++RD  RFHH++DG CS
Sbjct: 799 LAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFISKVASREIIVRDINRFHHFRDGSCS 858

Query: 718 CKDYW 722
           C DYW
Sbjct: 859 CGDYW 863



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 215/448 (47%), Gaps = 37/448 (8%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +P +L     ++ +  GM +H    ++       ++  LV +Y  C     AR +    S
Sbjct: 53  YPKLLLQFTASKDVSSGMAIH---ARIIRLGLLGLRNRLVNLYSKCQCFRVARKLVIDSS 109

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
             D+V WS +I GY QNG  +E L  + EM +   + +E   S +L  CS   NL  G+ 
Sbjct: 110 EPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQ 169

Query: 240 VHEFIIDNNVALDAHLQSTLIT--MYANCGCMDMAKGLFDK--------VLLK-----NL 284
           +H       VAL   + ST I+   ++    ++   GL D+         L+K     + 
Sbjct: 170 IHR------VALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDP 223

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
             + A++  Y+++G  E A  +F ++ + D++ W+A+I+G   +     ALKL  +M   
Sbjct: 224 FSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSY 283

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
            + P   T+ S + ACA +G++   +++H  + K     D  V   +IDMY+KCG L+ A
Sbjct: 284 RVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDA 343

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
           R VF+ M  ++VI W S+I+ ++  G    A+  F  M  E ++ N  T   +L   S A
Sbjct: 344 RMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILK--STA 401

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYG----CMVDLFGRANLLREALELVETMPFAPNVV 520
           G    G   F    +  +I   Y++ G     ++D +G+  LL +A ++ E  P A ++V
Sbjct: 402 GSQANG---FCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCP-AEDLV 457

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQL 548
            + S++ A   +G   L E A K  L++
Sbjct: 458 AYTSMITAYSQYG---LGEEALKMYLRM 482


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 259/733 (35%), Positives = 402/733 (54%), Gaps = 89/733 (12%)

Query: 2   STLSQPTKPLTLPT--STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL 59
           +T  +   P+T  +  + ++  C +L  +KQ H QI K  +      S L KL+     +
Sbjct: 13  ATQIKEADPMTKDSCLNESLRCCKTLNQLKQLHCQITK--NGLDQIPSTLTKLVNAGAEI 70

Query: 60  PTTTPSSLYYALSIFSQIPAPPSR-----VSNKFIRAISWSHRPKHALKVFLKMLNEGLT 114
              +P SL YA   F              + N  IR  S +   + A+ ++++ML  G+T
Sbjct: 71  --ASPESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVT 128

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
            + ++FP +L    +     EG+QVHG   K+G   D F+Q  L+  Y  CG +     +
Sbjct: 129 PNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKV 188

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           F+ MS R++V W+ +I GY +     E ++LF EM           L+K++         
Sbjct: 189 FEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEM-----------LNKVMV-------- 229

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
                                 + L+ MY  CG +D AK LFD+ + +NLV+   ++S Y
Sbjct: 230 ----------------------NALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNY 267

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
           +R G   +A  I D+M+++                               G +PD+VTML
Sbjct: 268 ARQGLAREALAILDEMLQQ-------------------------------GPRPDRVTML 296

Query: 355 SVISACAHL-----GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           S ISA A L     G +     +H YI+KN    D+R+N A++DM+A+CG  +SA +VF 
Sbjct: 297 SAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFN 356

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
           +M  R+V +WT+ I   A+ G+   A   FN+M  + + P+ V F+ VL ACSH G V++
Sbjct: 357 KMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQ 416

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G  IF S+  ++ I P+ EHYGCMVDL GRA LLREA +L+++MP  PN V+WGSL+AAC
Sbjct: 417 GLHIF-SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAAC 475

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
           RVH  +E+A +AA+++ +L P   G  VLLSNIYA   +W DV  +R +++E+G+ K   
Sbjct: 476 RVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPG 535

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
            S +++N  ++EF + D SH +   I   L E+      AG++PD+ + L+D++++EK  
Sbjct: 536 SSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEY 595

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
           ++  HSEKLA+ +GLI++ +   IR+VKNLR+C DCH+F K+ S +Y REI++RD  RFH
Sbjct: 596 LLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFH 655

Query: 710 HYKDGVCSCKDYW 722
            ++ G+CSC DYW
Sbjct: 656 FFRQGLCSCCDYW 668


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/617 (39%), Positives = 381/617 (61%), Gaps = 15/617 (2%)

Query: 118 FSFPP---ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
           FS P     ++ + +   L +  Q+H      G   +  +   L+  Y  C  +  AR++
Sbjct: 50  FSLPSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIV 109

Query: 175 FDKM-SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP---DEMVLSKILSACSR 230
           FD+  S    + W++MI  Y +     E L LF +M +++  P   D+   + + +ACSR
Sbjct: 110 FDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQM-LAHGRPTSADKYTFTFVFTACSR 168

Query: 231 AGNL-SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
              L  YGE VH  ++ +    D  + ++L+ MY+    M  AK +FD++  ++++  T+
Sbjct: 169 HPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTS 228

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG--MK 347
           +V GY+  G++  AR +FD M  ++ + W+ M++GY  +    EAL+ FN+M +C   +K
Sbjct: 229 VVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDM-LCHDEVK 287

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           P++  ++S++SACAHLG LDQ + IH+YIDKN       ++ A+IDMYAKCG ++ AR V
Sbjct: 288 PNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRV 347

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F+ + +R++++WTSMI+  ++HG     L  F++M  E   P+ +T +GVL  CSH+GLV
Sbjct: 348 FDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLV 407

Query: 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
           +EG  IF  M   + I PK EHYGC++DL GRA  L  A E +++MP  P+VV W +L++
Sbjct: 408 EEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLS 467

Query: 528 ACRVHGEIELAEFAAKQLLQLDP-DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILK 586
           ACR+HG+++L E     + +L P  H G  VLLSN+YA   +W+ V ++RK+M +RG   
Sbjct: 468 ACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEG 527

Query: 587 ERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK-PAGYVPDIHSALVDLEDE 645
              CS IE++  V+EFL AD+ H +  +I +KLNEV+  +    GYVP     L DL +E
Sbjct: 528 CPGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEE 587

Query: 646 EKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDR 705
           +K + + WHSEKLA+ +GL+S+++ + IRI KNLR CEDCH+ +K +S V+ REIV+RDR
Sbjct: 588 DKEQAVSWHSEKLAVAFGLLSTQEGT-IRITKNLRTCEDCHSAMKTISLVFNREIVVRDR 646

Query: 706 TRFHHYKDGVCSCKDYW 722
           +RFH ++ G CSC DYW
Sbjct: 647 SRFHTFRYGNCSCTDYW 663



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/466 (30%), Positives = 227/466 (48%), Gaps = 80/466 (17%)

Query: 8   TKPLTLPTSTA----ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTT 63
           T   +LP+ +     +    SLT +KQ HAQ+  ++H   +QN+ LL  L+ S+      
Sbjct: 47  TSSFSLPSHSTFVQLLKKRPSLTQIKQIHAQV--VTHG-LAQNTSLLGPLIHSY----IG 99

Query: 64  PSSLYYALSIFSQIPA-PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG--LTIDRFSF 120
             +L +A  +F Q P+ PP+ + N  I+A S +   + +L +F +ML  G   + D+++F
Sbjct: 100 CRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTF 159

Query: 121 PPILKAIARAEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
             +  A +R   L   G  VHG+  K G+ SD FV   LV MY    +++DA+ +FD+M 
Sbjct: 160 TFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMP 219

Query: 180 YRDI-------------------------------VPWSVMIDGYFQNGLFDEVLNLFEE 208
            RD+                               V W+VM+ GY  +  ++E L  F +
Sbjct: 220 QRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFND 279

Query: 209 MKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           M   + V+P+E VL  ILSAC+  G L  G+ +H +I  N + L +++ + LI MYA CG
Sbjct: 280 MLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCG 339

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
            +D A+ +FD +  ++L+  T+M+SG S  G                             
Sbjct: 340 RIDCARRVFDGLHKRDLLTWTSMISGLSMHGL---------------------------- 371

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI-HLYIDKNAFGGDLR 386
                E L  F+EM   G KPD +T+L V++ C+H G++++   I H  I        L 
Sbjct: 372 ---GAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLE 428

Query: 387 VNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGD 431
               +ID+  + G LESA E  + M    +V++W ++++A  IHGD
Sbjct: 429 HYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGD 474


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/603 (37%), Positives = 366/603 (60%), Gaps = 32/603 (5%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +  +L++    + +  G Q+H    ++G   +P + T LV +Y  C  + +A L+FD++S
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            R++  W+VMI GY  NG ++  ++L+ +M+   + PD+     +L ACS    +  G+ 
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H+ +I + +  D  + + LI MYA C                               G 
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKC-------------------------------GC 152

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           VE AR +FD++ E+D++CW++M++ Y++N  P E+L L   M   G+KP + T +  I+A
Sbjct: 153 VESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAA 212

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
            A  G+L Q + +H Y  ++ F  + +V  A++DMYAK GS+  AR +FE +  + V+SW
Sbjct: 213 SADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSW 272

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            +MI  +A+HG A  AL  F +MK + + P+ +TF+GVL ACSH GL++EG+  F SM +
Sbjct: 273 NAMITGYAMHGHANEALDLFKEMKGKVL-PDHITFVGVLAACSHGGLLNEGKMHFRSMIS 331

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
           ++NI P  +HY CM+DL G    L EA +L+  M   P+  +WG+L+ +C++HG +E+ E
Sbjct: 332 DFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGE 391

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
            A ++L++L+PD  G  V+LSN+YA+  +W  V  LR  M  +G+ K  ACS IE+ N+V
Sbjct: 392 LALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGNKV 451

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
           + FL+ D SH +++ IY +L      +K AGY P + S   D+ED+EK +++  HSE+LA
Sbjct: 452 HAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVGSVFHDVEDDEKVDMVSCHSERLA 511

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           + +GLIS+   + + I+KNLR+CEDCH  IK +SK+  REI IRD  R+HH+KDGVCSC 
Sbjct: 512 IAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKITEREITIRDVNRYHHFKDGVCSCG 571

Query: 720 DYW 722
           D+W
Sbjct: 572 DFW 574



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 205/426 (48%), Gaps = 43/426 (10%)

Query: 29  KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKF 88
           KQ HA+I ++  S    N LL   L+  + +     +SL  A  +F +I      + N  
Sbjct: 21  KQLHARICQVGISF---NPLLATKLVNLYCIC----NSLTNAHLLFDRISKRNLFLWNVM 73

Query: 89  IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148
           IR  +W+   + A+ ++ +M + GL  D+F+FP +LKA +    + EG ++H    + G 
Sbjct: 74  IRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGL 133

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
            SD FV   L+ MY  CG +  AR +FDK+  RD+V W+ M+  Y QNG  DE L L   
Sbjct: 134 ESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRV 193

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M  + ++P E      ++A +  G L  G+ +H +   +    +  +++ L+ MYA  G 
Sbjct: 194 MAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGS 253

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           +++A+ LF+ +  K +V   AM++GY+  G                              
Sbjct: 254 VNVARSLFELLEEKRVVSWNAMITGYAMHG------------------------------ 283

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL--YIDKNAFGGDLR 386
            H  EAL LF EM+   + PD +T + V++AC+H G+L++  ++H    I        ++
Sbjct: 284 -HANEALDLFKEMK-GKVLPDHITFVGVLAACSHGGLLNEG-KMHFRSMISDFNIWPTVQ 340

Query: 387 VNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDE 445
               +ID+   CG LE A ++   MR   +   W +++++  IHG+     +   K+ + 
Sbjct: 341 HYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVEL 400

Query: 446 SIDPNG 451
             D  G
Sbjct: 401 EPDDGG 406


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/735 (33%), Positives = 400/735 (54%), Gaps = 75/735 (10%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83
           S +  KQ HAQ ++     H+  S+++ +         T    L+ AL +F  + +PP  
Sbjct: 20  SKSQAKQLHAQFIRTQSLSHTSASIVISIY--------TNLKLLHEALLLFKTLKSPPVL 71

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
                IR  +       AL  F++M   G   D   FP +LK+      L  G  VHG  
Sbjct: 72  AWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFI 131

Query: 144 TKLGFGSDPFVQTGLVGMYG---------ACGKILD------------------------ 170
            +LG   D +    L+ MY          + G + D                        
Sbjct: 132 VRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFG 191

Query: 171 ---ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
               R +F+ M  +D+V ++ +I GY Q+G++++ L +  EM  ++++PD   LS +L  
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
            S   ++  G+ +H ++I   +  D ++ S+L+ MYA                       
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYA----------------------- 288

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
                   ++ ++ED+  +F ++  +D I W+++++GY +N    EAL+LF +M    +K
Sbjct: 289 --------KSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVK 340

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           P  V   SVI ACAHL  L   +++H Y+ +  FG ++ + +A++DMY+KCG++++AR++
Sbjct: 341 PGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKI 400

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F+RM   + +SWT++I   A+HG    A+  F +MK + + PN V F+ VL ACSH GLV
Sbjct: 401 FDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLV 460

Query: 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
           DE    F SMT  Y +  + EHY  + DL GRA  L EA   +  M   P   +W +L++
Sbjct: 461 DEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLS 520

Query: 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587
           +C VH  +ELAE  A+++  +D ++ GA VL+ N+YA + RW+++ +LR  M+++G+ K+
Sbjct: 521 SCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKK 580

Query: 588 RACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEK 647
            ACS IEM N+ + F++ DRSH   D+I E L  V+ +++  GYV D    L D+++E K
Sbjct: 581 PACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHK 640

Query: 648 REVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTR 707
           RE++  HSE+LA+ +G+I+++  + IR+ KN+R+C DCH  IK +SK+  REI++RD +R
Sbjct: 641 RELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSR 700

Query: 708 FHHYKDGVCSCKDYW 722
           FHH+  G CSC DYW
Sbjct: 701 FHHFNRGNCSCGDYW 715


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/626 (39%), Positives = 384/626 (61%), Gaps = 4/626 (0%)

Query: 99  KHALKVFLKML-NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           K A+ +F +M+ +E +  +  +   ++ A A+ E L  G +V+      G   +  + + 
Sbjct: 216 KDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISA 275

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           LV MY  C  I  A+ +FD+    ++   + M   Y + GL  E L +   M  S + PD
Sbjct: 276 LVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPD 335

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
            + +   +S+CS+  N+ +G++ H +++ N      ++ + LI MY  C   D A  +FD
Sbjct: 336 RISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFD 395

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
           ++  K +V   ++V+GY   G+V+ A   F+ M EK+++ W+ +IS   + N  +EA+++
Sbjct: 396 RMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEV 455

Query: 338 FNEMQV--CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           F+ MQ   C +  D VTM+S+ SAC HLG LD A+ I+ YI+KN    D+R+   ++DM+
Sbjct: 456 FHYMQSQEC-VNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMF 514

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           ++CG  ESA  +F  +  R+V +WT+ I A A+ G+   A+  FN+M ++ + P+GV FI
Sbjct: 515 SRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFI 574

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
           G L AC H GLV +G+EIF SM   + + P+  HYGCMVDL GRA LL EAL+L++ MP 
Sbjct: 575 GALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPT 634

Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575
            PN VIW SL+AACRV G +E+A FAA+++  L P+  G+ VLLSN+YA   RW D+ ++
Sbjct: 635 EPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKV 694

Query: 576 RKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
           R SMKE+G+ K    S I++  + +EF + D SH +  +I   L+E+       G+VPD+
Sbjct: 695 RLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGHVPDL 754

Query: 636 HSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKV 695
            + L+D++++EK  ++  HSEKLA+ +GLISS K + IRIVKNLRVC  CH+F K  SKV
Sbjct: 755 SNVLMDVDEQEKIFMLSRHSEKLAMAFGLISSNKGTTIRIVKNLRVCSYCHSFAKFASKV 814

Query: 696 YAREIVIRDRTRFHHYKDGVCSCKDY 721
           Y REI++RD  RFH  + G CSC D+
Sbjct: 815 YNREIILRDNNRFHFIRQGKCSCSDF 840



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/484 (29%), Positives = 249/484 (51%), Gaps = 45/484 (9%)

Query: 3   TLSQPTKP----LTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFS 58
           + S+P+ P     T  T +++ +C ++  +K  H  + K         S + KL+  S  
Sbjct: 18  STSKPSLPNQSKRTKATPSSLKNCKTIDELKMFHLSLTK--QGLDDDVSAITKLVARSCE 75

Query: 59  LPTTTPSSLYYALSIFSQIPAPPS-RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117
           L T    SL +A  +F    +  +  + N  IR  + S   K A+ +F++M+N G++ D+
Sbjct: 76  LGTR--ESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDK 133

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
           ++FP  L   A++     G+Q+HGL  K+ +  D FVQ  LV  Y  CG++  AR +FD+
Sbjct: 134 YTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDE 193

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSY 236
           MS R++V W+ MI GY +     + ++LF  M +  +V P+ + +  ++SAC++  +L  
Sbjct: 194 MSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLET 253

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           GE V++FI D+ + ++  + S L+ MY  C  +D+AK LFD+    NL +  AM S Y R
Sbjct: 254 GEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVR 313

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
            G                                 +EAL + N M   G++PD+++MLS 
Sbjct: 314 QGLT-------------------------------KEALGVLNLMMDSGIRPDRISMLSA 342

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           IS+C+ L  +   +  H Y+ +N F     + NA+IDMY KC   ++A  +F+RM  + V
Sbjct: 343 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 402

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           ++W S++  +  +G+   A   FN M +++I    V++  ++ A     + +E  E+F  
Sbjct: 403 VTWNSIVAGYIENGEVDAAWETFNTMPEKNI----VSWNTIISALVQENMYEEAIEVFHY 458

Query: 477 MTNE 480
           M ++
Sbjct: 459 MQSQ 462


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 254/672 (37%), Positives = 382/672 (56%), Gaps = 44/672 (6%)

Query: 60  PTTTP--SSLYYALSIFSQIPA-PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTID 116
           P ++P  S+   ++S FS  P+ PP+  +N  I+++      +  LK  L +L+      
Sbjct: 13  PPSSPRYSTSKLSVSSFSFNPSTPPNSNNNHLIQSLC----KQGNLKQALYLLSHESNPT 68

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
           + +   ++ + AR   L + + VH L    GF  DPF+ T L+ M+     + +AR +FD
Sbjct: 69  QQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFD 128

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA----G 232
           K   R I  W+ +       G  ++VL L+  M M  V  D    + +L AC  +     
Sbjct: 129 KTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVS 188

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
            L  G+ +H  I+ +      H+ +TL+ MYA  GC                        
Sbjct: 189 FLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGC------------------------ 224

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK--PDK 350
                  V  A  +FD+M  K+++ WSAMI+ YA+N  P EAL+LF EM +      P+ 
Sbjct: 225 -------VSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNS 277

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           VTM+SV+ ACA    L+Q + IH YI +      L V +A+I MYA+CG LES + +F+R
Sbjct: 278 VTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDR 337

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M +++V+ W S+I+++ +HG  R A+  F +M D    P+ ++FI VL ACSH GLV+EG
Sbjct: 338 MHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEG 397

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
           +++F SM  E+ I P  EHY CMVDL GRAN L EA +++E +   P   +WGSL+ ACR
Sbjct: 398 KKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACR 457

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
           +H  +ELAE A+K+L +L+P + G  VLL++IYA+ + W +V  ++K +  R + K    
Sbjct: 458 IHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGR 517

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
           S IE+  ++Y F + D  + Q +Q++  L  + +E+K  GY P     L DL+ EEK  +
Sbjct: 518 SWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERI 577

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           +L HSEKLA+ +GLI++ K   IRI KNLR+CEDCH+  K +SK   REI++RD  RFHH
Sbjct: 578 VLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHH 637

Query: 711 YKDGVCSCKDYW 722
           +KDGVCSC DYW
Sbjct: 638 FKDGVCSCGDYW 649



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 193/393 (49%), Gaps = 43/393 (10%)

Query: 45  QNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKV 104
           Q+  L   L+  FS   T  +    A  +F +       V N   RA++ + R    L++
Sbjct: 102 QDPFLATKLINMFSELDTVDN----ARKVFDKTRKRTIYVWNALFRALALAGRGNDVLEL 157

Query: 105 FLKMLNEGLTIDRFSFPPILKAIARAEGLL----EGMQVHGLGTKLGFGSDPFVQTGLVG 160
           + +M   G++ DRF++  +LKA   +E L+    +G ++H    + G+G+   V T L+ 
Sbjct: 158 YPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMD 217

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE--PDE 218
           MY   G +  A  +FD+M  +++V WS MI  Y +NG   E L LF EM ++  +  P+ 
Sbjct: 218 MYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNS 277

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           + +  +L AC+    L  G+ +H +I+   +     + S LITMYA              
Sbjct: 278 VTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYA-------------- 323

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
                            R G++E  +LIFD+M +KD++ W+++IS Y  + + ++A+K+F
Sbjct: 324 -----------------RCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIF 366

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI-HLYIDKNAFGGDLRVNNAIIDMYAK 397
            EM   G  P  ++ +SV+ AC+H G++++ +++    + ++     +     ++D+  +
Sbjct: 367 EEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGR 426

Query: 398 CGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
              L+ A ++ E +R       W S++ A  IH
Sbjct: 427 ANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIH 459


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/709 (35%), Positives = 390/709 (55%), Gaps = 74/709 (10%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I A     +   AL +F +M   G+  + ++F   L+ +     +  GM +HG   K
Sbjct: 217 NSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALK 276

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
               +D +V   L+ MY  CG++ DA  +F  M  RD V W+ ++ G  QN L+ + LN 
Sbjct: 277 SNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNY 336

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ--------- 256
           F +M+ S  +PD++ +  +++A  R+GNL  G+ VH + I N   LD+++Q         
Sbjct: 337 FRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRN--GLDSNMQIGNTLIDMY 394

Query: 257 ------------------------STLITMYANCGCMDMAKGLFDKVLLK---------- 282
                                   +T+I  YA   C   A  LF KV +K          
Sbjct: 395 AKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIG 454

Query: 283 ----------------------------NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
                                       ++++  A+V+ Y   G  + AR  F+ +  KD
Sbjct: 455 SVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESIRSKD 514

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           ++ W++MI+    N  P EAL+LF  ++   ++PD + ++S +SA A+L  L + + IH 
Sbjct: 515 IVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHG 574

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           ++ +  F  +  + ++++DMYA CG++E++R++F  +++R++I WTSMINA  +HG    
Sbjct: 575 FLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNE 634

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           A+  F KM DE++ P+ +TF+ +LYACSH+GL+ EG+  F  M   Y + P  EHY CMV
Sbjct: 635 AIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMV 694

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DL  R+N L EA + V +MP  P+  +W +L+ AC +H   EL E AAK+LLQ D  + G
Sbjct: 695 DLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSG 754

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
              L+SNI+A D RW DV E+R  MK  G+ K   CS IE++N+++ F+  D+SH QTD 
Sbjct: 755 KYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDD 814

Query: 615 IYEKLNEVISEL-KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCI 673
           IY KL +    L K  GY+        ++ +EEK +++  HSE+LAL YGL+ + K + I
Sbjct: 815 IYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEEKTQMLYRHSERLALGYGLLVTPKGTSI 874

Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           RI KNLR+C+DCH F K+ S+V  R +V+RD  RFHH++ G+CSC D+W
Sbjct: 875 RITKNLRICDDCHTFFKIASEVSQRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 149/569 (26%), Positives = 252/569 (44%), Gaps = 62/569 (10%)

Query: 8   TKPLTLPT------STAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFS 58
           T PL  P+      S  +  C    +L   +Q HA++LK         S L   L T   
Sbjct: 36  THPLATPSRLEHAHSLLLDLCVAVKALPQGQQLHARLLK---------SHLSAFLATKLL 86

Query: 59  LPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
                  SL  A+ +F ++        N  + A   S +   A++++ +M   G+ ID  
Sbjct: 87  HMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDAC 146

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK- 177
           +FP +LKA         G ++HG+  K GFG   FV   L+ MYG CG +  AR++FD  
Sbjct: 147 TFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGI 206

Query: 178 -MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
            M   D V W+ +I  +   G   E L+LF  M+   V  +       L        +  
Sbjct: 207 MMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKL 266

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G  +H   + +N   D ++ + LI MYA CG M+                          
Sbjct: 267 GMGIHGAALKSNHFADVYVANALIAMYAKCGRME-------------------------- 300

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
                DA  +F  M+ +D + W+ ++SG  +N   ++AL  F +MQ    KPD+V++L++
Sbjct: 301 -----DAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNL 355

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           I+A    G L   + +H Y  +N    ++++ N +IDMYAKC  ++     FE M  +++
Sbjct: 356 IAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDL 415

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           ISWT++I  +A +     A+  F K++ + +D + +    VL ACS     +  REI   
Sbjct: 416 ISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGY 475

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRA---NLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           +          ++   +V+++G     +  R A E + +     ++V W S++  C  +G
Sbjct: 476 VFKRDLADIMLQN--AIVNVYGEVGHRDYARRAFESIRS----KDIVSWTSMITCCVHNG 529

Query: 534 -EIELAE-FAAKQLLQLDPDHDGALVLLS 560
             +E  E F + +   + PD    +  LS
Sbjct: 530 LPVEALELFYSLKQTNIQPDSIAIISALS 558


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/584 (42%), Positives = 356/584 (60%), Gaps = 7/584 (1%)

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201
           L T L   +D  V   L   Y A G++  +  +  +      + ++  I  +   G    
Sbjct: 313 LRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLP 372

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
            L L  +M    + P    LS  L AC     LS G A+H +     +A D+++ + L+ 
Sbjct: 373 ALALLSDMLAQGLLPTAHTLSASLPACR---GLSPGRALHGYAFKLALAGDSYVATALLG 429

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVS-TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
           MYA  G    A+ LFD +L    VVS TAM++ Y+  G ++DAR +FD +  KD +CW+A
Sbjct: 430 MYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNA 489

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           MI GY ++  P EAL+LF  M   G++PD+VT++ V+SA A LG ++  + +H Y+ KN+
Sbjct: 490 MIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYV-KNS 548

Query: 381 FGGDL--RVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
               L  RV  A+IDMY KCGSL  A +VF  +  ++++ W +MIN +A+HGD+R AL  
Sbjct: 549 RRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEM 608

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F + +++ + P  +TFIG+L ACSH+G+V+EGRE F SM  EY I PK EHYGCMVDL G
Sbjct: 609 FVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLG 668

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558
           RA L++EA  LV++M   P+ V+W SL+AACR+H  + L +  A  L+     + G  +L
Sbjct: 669 RAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYIL 728

Query: 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEK 618
           LSNIYA    W +V  +R  MK  GI KE  CS IE++ EVYEF+  D SH +TD+IY  
Sbjct: 729 LSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTDEIYVM 788

Query: 619 LNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKN 678
           L+++   +K  G+VP     L DL++  K + +  HSEKLAL +GLIS++  + I+IVKN
Sbjct: 789 LDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQPGATIKIVKN 848

Query: 679 LRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LR C DCH  +KL+S++  R+IV RDR RFHH+ DG CSC DYW
Sbjct: 849 LRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 198/447 (44%), Gaps = 76/447 (17%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           ++SCS+     + HA +L+      +  ++  +L              L  +L++  +  
Sbjct: 296 LTSCSTARRAAELHAAVLRTGLLDATDRAVAFRL-----QRAYAASGRLDLSLALLRRTR 350

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P +      I A S       AL +   ML +GL     +    L A     GL  G  
Sbjct: 351 DPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPA---CRGLSPGRA 407

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYG----------------------------AC----G 166
           +HG   KL    D +V T L+GMY                              C    G
Sbjct: 408 LHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMG 467

Query: 167 KILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS 226
            + DAR +FD +  +D V W+ MIDGY Q+G  +E L LF  M  S VEPDE+ +  +LS
Sbjct: 468 ALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLS 527

Query: 227 ACSRAGNLSYGEAVHEFIIDN-NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
           A ++ G +  G+ +H ++ ++  V L   + + LI MY  CG +  A  +F  +  K++V
Sbjct: 528 AVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIV 587

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
           V  AM++GY+  G   D+R                            +AL++F + +  G
Sbjct: 588 VWNAMINGYAMHG---DSR----------------------------KALEMFVQSREQG 616

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLES 403
           + P  +T + +++AC+H G++++ +     +++  +G D ++ +   ++D+  + G ++ 
Sbjct: 617 LWPTDITFIGLLNACSHSGMVEEGREFFQSMERE-YGIDPKIEHYGCMVDLLGRAGLIKE 675

Query: 404 AREVFERMR-RRNVISWTSMINAFAIH 429
           A  + + M+   + + W S++ A  +H
Sbjct: 676 AFCLVQSMKITPDAVMWVSLLAACRLH 702


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/600 (39%), Positives = 356/600 (59%), Gaps = 32/600 (5%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           IL+A A    +  G  VHG G K            L+ MY  CG +  A L+FD MS R 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +V W+ +I  Y + GL DE + LF EM    V PD   ++ +L AC+  G+L  G+ VH 
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           +I +N+      +QS                         N+ V  A++  Y++ G +ED
Sbjct: 124 YIREND------MQS-------------------------NIFVCNALMDMYAKCGSMED 152

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           A  +F +M  KD+I W+ MI GY++N+ P EAL LF +M V  MKPD  T+  ++ ACA 
Sbjct: 153 ANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDM-VLEMKPDGTTLACILPACAS 211

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           L  LD+ + +H +I +N F  D +V NA++DMY KCG    AR +F+ +  +++I+WT M
Sbjct: 212 LASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVM 271

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I  + +HG   NA+  FN+M+   I+P+ V+FI +LYACSH+GL+DEG   F  M +E N
Sbjct: 272 IAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECN 331

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           + PK EHY C+VDL  R+  L  A + +++MP  P+  IWG+L++ CR+H +++LAE  A
Sbjct: 332 VKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVA 391

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           + + +L+P++ G  VLL+N YA+ ++W++V +LR+ +  RG+ K   CS IE+ ++V+ F
Sbjct: 392 EHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIF 451

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
           L  + SH Q  +I   L  + S++K  GY P    AL++ +  +K   +  HSEKLA+ +
Sbjct: 452 LAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALINADSLQKETALCGHSEKLAMAF 511

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           G+++      IR+ KNLRVC DCH   K +SK   REIV+RD  RFHH+KDGVC C+ +W
Sbjct: 512 GILNLPPARTIRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 169/337 (50%), Gaps = 34/337 (10%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A+++F +M  EG++ D F+   +L A A    L  G  VH    +    S+ FV   L+ 
Sbjct: 83  AIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMD 142

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG + DA  +F +M  +DI+ W+ MI GY +N L +E L+LF +M +  ++PD   
Sbjct: 143 MYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTT 201

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           L+ IL AC+   +L  G+ VH  I+ N    D  + + L+ MY  CG   +A+ LFD + 
Sbjct: 202 LACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIP 261

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            K+L+  T M++GY                           + G+  N     A+  FNE
Sbjct: 262 TKDLITWTVMIAGYG--------------------------MHGFGNN-----AITTFNE 290

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           M+  G++PD+V+ +S++ AC+H G+LD+  R  ++  D+      L     I+D+ A+ G
Sbjct: 291 MRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSG 350

Query: 400 SLESAREVFERMR-RRNVISWTSMINAFAIHGDARNA 435
            L  A +  + M    +   W ++++   IH D + A
Sbjct: 351 KLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLA 387


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/622 (38%), Positives = 370/622 (59%), Gaps = 38/622 (6%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
            VH     L F  +P +   L+  Y A G+   AR +FD +  R+++ ++VMI  Y  N 
Sbjct: 53  NVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNH 112

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
           L+D+ L +F +M      PD      +L ACS + NL  G  +H  +    + L+  + +
Sbjct: 113 LYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGN 172

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI----------- 306
            LI +Y  CGC+  A+ + D++  K++V   +MV+GY++  Q +DA  I           
Sbjct: 173 GLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKP 232

Query: 307 --------------------------FDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                                     F  + +K L+ W+ MIS Y +N+ P +++ L+ +
Sbjct: 233 DACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQ 292

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M  C ++PD +T  SV+ AC  L  L   +RIH Y+++     ++ + N++IDMYA+CG 
Sbjct: 293 MGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGC 352

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           LE A+ VF+RM+ R+V SWTS+I+A+ + G   NA+  F +M++    P+ + F+ +L A
Sbjct: 353 LEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSA 412

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSH+GL++EG+  F  MT++Y I P  EH+ C+VDL GR+  + EA  +++ MP  PN  
Sbjct: 413 CSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNER 472

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           +WG+L+++CRV+  +++   AA +LLQL P+  G  VLLSNIYAK  RW +V  +R  MK
Sbjct: 473 VWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMK 532

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
            R I K    S +E+NN+V+ FL  D  H Q+ +IYE+L+ ++ ++K  GYVP   SAL 
Sbjct: 533 RRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALH 592

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D+E+E+K   +  HSEKLA+ + ++++ ++S IRI KNLRVC DCH   KL+SK+  REI
Sbjct: 593 DVEEEDKECHLAVHSEKLAIVFAILNT-QESPIRITKNLRVCGDCHIAAKLISKIVQREI 651

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           VIRD  RFHH+KDG+CSC DYW
Sbjct: 652 VIRDTNRFHHFKDGICSCGDYW 673



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 227/459 (49%), Gaps = 56/459 (12%)

Query: 28  MKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNK 87
           +K  H+++  LS   H   SL +KL+    +     P     A ++F  IP       N 
Sbjct: 51  LKNVHSKVFNLSF--HENPSLGIKLMRAYAA--RGEPG---LARNVFDVIPERNVIFYNV 103

Query: 88  FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
            IR+   +H    AL VF  M++ G + D +++P +LKA + ++ L  G+Q+HG   K+G
Sbjct: 104 MIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVG 163

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207
              + FV  GL+ +YG CG + +AR + D+M  +D+V W+ M+ GY QN  FD+ L++  
Sbjct: 164 LDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICR 223

Query: 208 EMKMSNVEPDEMVLSKILSACSRAG--NLSYGEAV-----HEFIIDNNVALDAHLQSTL- 259
           EM     +PD   ++ +L A +     N+ Y E +      + ++  NV +  ++++++ 
Sbjct: 224 EMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMP 283

Query: 260 ---ITMYANCG-----------------CMDMAKGLFD---------KVLLKNLVVSTAM 290
              + +Y   G                 C D++  L           K L  N+++  ++
Sbjct: 284 GKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSL 343

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           +  Y+R G +EDA+ +FD+M  +D+  W+++IS Y        A+ LF EMQ  G  PD 
Sbjct: 344 IDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDS 403

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI------IDMYAKCGSLESA 404
           +  ++++SAC+H G+L++ +    Y  +     D ++   I      +D+  + G ++ A
Sbjct: 404 IAFVAILSACSHSGLLNEGK---FYFKQ--MTDDYKITPIIEHFACLVDLLGRSGRVDEA 458

Query: 405 REVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKM 442
             + ++M  + N   W +++++  ++ +    ++  +K+
Sbjct: 459 YNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKL 497



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 14/173 (8%)

Query: 365 VLDQ------AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           VLDQ       + +H  +   +F  +  +   ++  YA  G    AR VF+ +  RNVI 
Sbjct: 41  VLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIF 100

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           +  MI ++  +    +AL+ F  M      P+  T+  VL ACS +  +  G ++  ++ 
Sbjct: 101 YNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVF 160

Query: 479 N---EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
               + N+   +   G ++ L+G+   L EA  +++ M  + +VV W S++A 
Sbjct: 161 KVGLDLNL---FVGNG-LIALYGKCGCLPEARCVLDEMQ-SKDVVSWNSMVAG 208


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/592 (41%), Positives = 352/592 (59%), Gaps = 33/592 (5%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKI-LDARLMF--DKMS---YRDIVPWSVMID 191
           Q+H L  KLG   +P V T           +   + ++F  D+ +     D   ++ +I 
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIR 199

Query: 192 GYFQNGLFD-EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
            + Q        L  +  M+   V P++     +L AC+    L  G AVH  ++     
Sbjct: 200 AFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFE 259

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
            D H+++TL+ MY  C C D + G                            A+ +FD+ 
Sbjct: 260 EDPHVRNTLVHMYC-CCCQDGSSGPVS-------------------------AKKVFDES 293

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
             KD + WSAMI GYA   +   A+ LF EMQV G+ PD++TM+SV+SACA LG L+  +
Sbjct: 294 PVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGK 353

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
            +  YI++      + + NA+IDM+AKCG ++ A +VF  M+ R ++SWTSMI   A+HG
Sbjct: 354 WLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHG 413

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
               A++ F++M ++ +DP+ V FIGVL ACSH+GLVD+G   F +M N ++I PK EHY
Sbjct: 414 RGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHY 473

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
           GCMVD+  RA  + EALE V  MP  PN VIW S++ AC   GE++L E  AK+L++ +P
Sbjct: 474 GCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREP 533

Query: 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK 610
            H+   VLLSNIYAK  RW+   ++R+ M  +G+ K    + IEMNNE+YEF+  D+SH 
Sbjct: 534 SHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHD 593

Query: 611 QTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD 670
           Q  +IYE + E+  E+K AGYVP     L+D+++E+K + +  HSEKLA+ + L+S+   
Sbjct: 594 QYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPG 653

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + IRIVKNLRVCEDCH+  K +SKVY REIV+RDR RFHH+K+G+CSC D+W
Sbjct: 654 TPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 125/421 (29%), Positives = 207/421 (49%), Gaps = 58/421 (13%)

Query: 30  QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIF---SQIPAPPSR--- 83
           Q H+ ILKL   H+        L+LT F+  ++  ++++YA S+     Q   PPS    
Sbjct: 140 QIHSLILKLGLHHNP-------LVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAF 192

Query: 84  VSNKFIRAISWS-HRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGL 142
           + N  IRA + + H   HAL+ +  M    ++ ++F+FP +LKA A    L  G  VH  
Sbjct: 193 LFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHAS 252

Query: 143 GTKLGFGSDPFVQTGLVGMYGACGK-----ILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
             K GF  DP V+  LV MY  C +      + A+ +FD+   +D V WS MI GY + G
Sbjct: 253 MVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAG 312

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
                + LF EM+++ V PDE+ +  +LSAC+  G L  G+ +  +I   N+     L +
Sbjct: 313 NSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCN 372

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
            LI M+A CG +D A  +F ++ ++ +V  T+M+ G +  G+  +A L+FD+M+E+    
Sbjct: 373 ALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQ---- 428

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
                                      G+ PD V  + V+SAC+H G++D+    H Y +
Sbjct: 429 ---------------------------GVDPDDVAFIGVLSACSHSGLVDKG---HYYFN 458

Query: 378 --KNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDA 432
             +N F    ++ +   ++DM ++ G +  A E    M    N + W S++ A    G+ 
Sbjct: 459 TMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGEL 518

Query: 433 R 433
           +
Sbjct: 519 K 519


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 252/603 (41%), Positives = 355/603 (58%), Gaps = 13/603 (2%)

Query: 129 RAEGLLEGM-------QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
           R  GLL G        ++H    + G   D  V   L   Y A  ++     +       
Sbjct: 37  RVAGLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDP 96

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
             V ++  I  +   GL    L L  EM    + P    LS  L AC     L+ G A+H
Sbjct: 97  TTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACH---GLALGRALH 153

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
            +     +A D+++ + L+ MYA  G  D A+ LFD++   ++V  TAM++ Y++ G ++
Sbjct: 154 AYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALD 213

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
           DAR +FD M  KD ICW+AMI GY ++  P EAL+LF  M   G+ PD+V ++  +SA A
Sbjct: 214 DARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVA 273

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDL--RVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
            LG  +  + +H Y+ KN+    L  RV  A+IDMY KCGSLE A  VF  +  ++++ W
Sbjct: 274 QLGTAESGRWLHSYV-KNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVW 332

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            +MIN +A+HGD+R AL  F++++ + + P  +TFIG+L ACSH+GLVDEG + F SM  
Sbjct: 333 NAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEE 392

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
           EY I PK EHYGCMVDL GRA L+ EA  LV++M  AP+ V+W SL+AACR+H  + L +
Sbjct: 393 EYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQ 452

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
             A  L+     + G  +LLSNIYA    W++V  +R  MK  GI KE  CS IE+  +V
Sbjct: 453 QIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKV 512

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
           YEF+  D SH +TD+IY  L ++   +K  G+VP     L DL++  K + +  HSEKLA
Sbjct: 513 YEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLA 572

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           + +GLIS+     I+IVKNLR C DCH  +KL+SK+  R+IV RDR RFHH+ DG C+C 
Sbjct: 573 VAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCG 632

Query: 720 DYW 722
           DYW
Sbjct: 633 DYW 635



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 164/357 (45%), Gaps = 68/357 (19%)

Query: 107 KMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYG--- 163
           +ML  GL     +    L A     GL  G  +H    KL    D +V T L+GMY    
Sbjct: 123 EMLGRGLIPTSHTLSSSLPA---CHGLALGRALHAYAFKLALAGDSYVATALLGMYARGG 179

Query: 164 ------------------------AC----GKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
                                    C    G + DAR +FD M  +D + W+ MIDGY Q
Sbjct: 180 DADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQ 239

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN-NVALDAH 254
           +G  +E L LF  M  S V+PDE+ +   LSA ++ G    G  +H ++ ++  V L+A 
Sbjct: 240 HGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNAR 299

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           + + LI MY  CG ++ A  +F+ +  K++VV  AM++GY+  G   D+R          
Sbjct: 300 VGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHG---DSR---------- 346

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
                             +AL++F++++  G+ P  +T + +++AC+H G++D+  +   
Sbjct: 347 ------------------KALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQ 388

Query: 375 YIDKN-AFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
            +++  A    +     ++D+  + G +E A  + + M    + + W S++ A  +H
Sbjct: 389 SMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLH 445



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 109/259 (42%), Gaps = 28/259 (10%)

Query: 10  PLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLL-------------KLLLTS 56
           P +   S+++ +C  L   +  HA   KL+ +  S  +  L             + L   
Sbjct: 131 PTSHTLSSSLPACHGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDE 190

Query: 57  FSLPTTTP-----------SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVF 105
              P   P            +L  A  +F  +P+      N  I   +   RP  AL++F
Sbjct: 191 MPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLF 250

Query: 106 LKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG-LGTKLGFGSDPFVQTGLVGMYGA 164
             ML  G+  D  +    L A+A+      G  +H  +        +  V T L+ MY  
Sbjct: 251 RWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCK 310

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
           CG + DA  +F+ +  +DIV W+ MI+GY  +G   + L +F +++   + P ++    +
Sbjct: 311 CGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGL 370

Query: 225 LSACSRAGNLSYGEAVHEF 243
           L+ACS +G +  G   H+F
Sbjct: 371 LNACSHSGLVDEG---HQF 386


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 252/603 (41%), Positives = 355/603 (58%), Gaps = 13/603 (2%)

Query: 129 RAEGLLEGM-------QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
           R  GLL G        ++H    + G   D  V   L   Y A  ++     +       
Sbjct: 36  RVAGLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDP 95

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
             V ++  I  +   GL    L L  EM    + P    LS  L AC     L+ G A+H
Sbjct: 96  TTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACH---GLALGRALH 152

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
            +     +A D+++ + L+ MYA  G  D A+ LFD++   ++V  TAM++ Y++ G ++
Sbjct: 153 AYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALD 212

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
           DAR +FD M  KD ICW+AMI GY ++  P EAL+LF  M   G+ PD+V ++  +SA A
Sbjct: 213 DARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVA 272

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDL--RVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
            LG  +  + +H Y+ KN+    L  RV  A+IDMY KCGSLE A  VF  +  ++++ W
Sbjct: 273 QLGTAESGRWLHSYV-KNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVW 331

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            +MIN +A+HGD+R AL  F++++ + + P  +TFIG+L ACSH+GLVDEG + F SM  
Sbjct: 332 NAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEE 391

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
           EY I PK EHYGCMVDL GRA L+ EA  LV++M  AP+ V+W SL+AACR+H  + L +
Sbjct: 392 EYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQ 451

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
             A  L+     + G  +LLSNIYA    W++V  +R  MK  GI KE  CS IE+  +V
Sbjct: 452 QIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKV 511

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
           YEF+  D SH +TD+IY  L ++   +K  G+VP     L DL++  K + +  HSEKLA
Sbjct: 512 YEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLA 571

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           + +GLIS+     I+IVKNLR C DCH  +KL+SK+  R+IV RDR RFHH+ DG C+C 
Sbjct: 572 VAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCG 631

Query: 720 DYW 722
           DYW
Sbjct: 632 DYW 634



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 164/357 (45%), Gaps = 68/357 (19%)

Query: 107 KMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYG--- 163
           +ML  GL     +    L A     GL  G  +H    KL    D +V T L+GMY    
Sbjct: 122 EMLGRGLIPTSHTLSSSLPA---CHGLALGRALHAYAFKLALAGDSYVATALLGMYARGG 178

Query: 164 ------------------------AC----GKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
                                    C    G + DAR +FD M  +D + W+ MIDGY Q
Sbjct: 179 DADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQ 238

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN-NVALDAH 254
           +G  +E L LF  M  S V+PDE+ +   LSA ++ G    G  +H ++ ++  V L+A 
Sbjct: 239 HGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNAR 298

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           + + LI MY  CG ++ A  +F+ +  K++VV  AM++GY+  G   D+R          
Sbjct: 299 VGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHG---DSR---------- 345

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
                             +AL++F++++  G+ P  +T + +++AC+H G++D+  +   
Sbjct: 346 ------------------KALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQ 387

Query: 375 YIDKN-AFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
            +++  A    +     ++D+  + G +E A  + + M    + + W S++ A  +H
Sbjct: 388 SMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLH 444



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 109/259 (42%), Gaps = 28/259 (10%)

Query: 10  PLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLL-------------KLLLTS 56
           P +   S+++ +C  L   +  HA   KL+ +  S  +  L             + L   
Sbjct: 130 PTSHTLSSSLPACHGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDE 189

Query: 57  FSLPTTTP-----------SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVF 105
              P   P            +L  A  +F  +P+      N  I   +   RP  AL++F
Sbjct: 190 MPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLF 249

Query: 106 LKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG-LGTKLGFGSDPFVQTGLVGMYGA 164
             ML  G+  D  +    L A+A+      G  +H  +        +  V T L+ MY  
Sbjct: 250 RWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCK 309

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
           CG + DA  +F+ +  +DIV W+ MI+GY  +G   + L +F +++   + P ++    +
Sbjct: 310 CGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGL 369

Query: 225 LSACSRAGNLSYGEAVHEF 243
           L+ACS +G +  G   H+F
Sbjct: 370 LNACSHSGLVDEG---HQF 385


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/644 (39%), Positives = 369/644 (57%), Gaps = 36/644 (5%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I  ++ S     AL  F  M    L   R SFP  +KA +    +  G Q H     
Sbjct: 45  NSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFV 104

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
            G+ SD FV + L+ MY  CGK+ DAR +FD++  RDIV W+ MI GY  NG   + ++L
Sbjct: 105 FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSL 164

Query: 206 FEEMKMSNVEPDE------MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259
           F+++ +   + D+      M L  ++SACSR       E++H F+I         + +TL
Sbjct: 165 FKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTL 224

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWS 319
           +  YA  G                              G V  AR IFDQ+V+KD + ++
Sbjct: 225 LDAYAKGG-----------------------------EGGVAVARKIFDQIVDKDRVSYN 255

Query: 320 AMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +++S YA++    EA ++F  + +   +  + +T+ +V+ A +H G L   + IH  + +
Sbjct: 256 SIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR 315

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
                D+ V  +IIDMY KCG +E+AR+ F+RM+ +NV SWT+MI  + +HG A  AL  
Sbjct: 316 MGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALEL 375

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F  M D  + PN +TF+ VL ACSHAGL  EG   F +M   + + P  EHYGCMVDL G
Sbjct: 376 FPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLG 435

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558
           RA  L++A +L++ M   P+ +IW SL+AACR+H  +ELAE +  +L +LD  + G  +L
Sbjct: 436 RAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYML 495

Query: 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEK 618
           LS+IYA   RW+DV  +R  MK RG++K    S +E+N EV+ FL  D  H Q ++IYE 
Sbjct: 496 LSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEF 555

Query: 619 LNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKN 678
           L E+  +L  AGYV +  S   D+++EEK   +  HSEKLA+ +G++++   S + +VKN
Sbjct: 556 LAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKN 615

Query: 679 LRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LRVC DCHN IKL+SK+  RE V+RD  RFHH+KDG CSC DYW
Sbjct: 616 LRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 103/188 (54%), Gaps = 7/188 (3%)

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK-DLICWSAMISGYAENNHPQEALKLFNE 340
           K L  S + +    R  + ++   +F++ V+K D+  W+++I+  A +    EAL  F+ 
Sbjct: 7   KALFCSVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSS 66

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M+   + P + +    I AC+ L  +   ++ H       +  D+ V++A+I MY+ CG 
Sbjct: 67  MRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGK 126

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM------KDESIDPNGVTF 454
           LE AR+VF+ + +R+++SWTSMI  + ++G+A +A+  F  +       D+++  + +  
Sbjct: 127 LEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGL 186

Query: 455 IGVLYACS 462
           + V+ ACS
Sbjct: 187 VSVISACS 194



 Score = 42.4 bits (98), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 10/152 (6%)

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
           + +V SW S+I   A  GD+  AL+ F+ M+  S+ P   +F   + ACS    +  G++
Sbjct: 38  KTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQ 97

Query: 473 IFASMTNEYNIPPKYEH----YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
                T++      Y+        ++ ++     L +A ++ + +P   ++V W S++  
Sbjct: 98  -----THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRDIVSWTSMIRG 151

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560
             ++G    A    K LL  + D D A+ L S
Sbjct: 152 YDLNGNALDAVSLFKDLLVDENDDDDAMFLDS 183


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/684 (37%), Positives = 376/684 (54%), Gaps = 47/684 (6%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR-AEGLLEGMQVHGLGT 144
           N  I A S SH    AL++F++M   G   D F+F  +L A++  A+      Q+H    
Sbjct: 99  NAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVF 158

Query: 145 KLGFGSDPFVQTGLVGMYGACG---------------KILD------------------- 170
           K G  S P V   L+  Y +C                K+ D                   
Sbjct: 159 KWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGY 218

Query: 171 --------ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
                   AR + + M+    V W+ MI GY   G ++E  +L   M    ++ DE   +
Sbjct: 219 VRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYT 278

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAH----LQSTLITMYANCGCMDMAKGLFDK 278
            ++SA S AG  + G  VH +++   V    H    + + LIT+Y  CG +  A+ +FDK
Sbjct: 279 SVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDK 338

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           + +K+LV   A++SG   A ++E+A  IF +M  + L+ W+ MISG A+N   +E LKLF
Sbjct: 339 MPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLF 398

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           N+M++ G++P        I++C+ LG LD  Q++H  I +      L V NA+I MY++C
Sbjct: 399 NQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRC 458

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G +E+A  VF  M   + +SW +MI A A HG    A+  + KM  E I P+ +TF+ +L
Sbjct: 459 GLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTIL 518

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            ACSHAGLV EGR  F +M   Y I P+ +HY  ++DL  RA +  EA  + E+MPF P 
Sbjct: 519 SACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPG 578

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
             IW +L+A C +HG +EL   AA +LL+L P  DG  + LSN+YA   +W +V  +RK 
Sbjct: 579 APIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKL 638

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           M+ERG+ KE  CS IE+ N V+ FL  D  H +   +Y  L +++ E++  GYVPD    
Sbjct: 639 MRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFV 698

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           L D+E E+K   +  HSEKLA+ YG++     + IR+ KNLR+C DCHN  K +SKV  R
Sbjct: 699 LHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVDR 758

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EI++RDR RFHH+++G CSC +YW
Sbjct: 759 EIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 208/461 (45%), Gaps = 53/461 (11%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDK--MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
           D    T ++  Y A G I  A  +F+   MS RD V ++ MI  +  +      L LF +
Sbjct: 61  DIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQ 120

Query: 209 MKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           MK     PD    S +L A S  A   ++ + +H  +          + + L++ Y +C 
Sbjct: 121 MKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCA 180

Query: 268 C---------MDMAKGLFDKVL--LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
                     M  A+ LFD+     ++    T +++GY R   +  AR + + M +   +
Sbjct: 181 SSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAV 240

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            W+AMISGY      +EA  L   M   G++ D+ T  SVISA ++ G+ +  +++H Y+
Sbjct: 241 AWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYV 300

Query: 377 DKNAFGGD----LRVNNAIIDMYAKCGSLESAREVFERM------------------RR- 413
            +          L VNNA+I +Y +CG L  AR VF++M                  RR 
Sbjct: 301 LRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRI 360

Query: 414 ------------RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
                       R++++WT MI+  A +G     L  FN+MK E ++P    + G + +C
Sbjct: 361 EEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASC 420

Query: 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI 521
           S  G +D G+++ + +  +            ++ ++ R  L+  A  +  TMP+  +V  
Sbjct: 421 SVLGSLDNGQQLHSQII-QLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVS- 478

Query: 522 WGSLMAACRVHGEIELAEFAAKQLLQLD--PDHDGALVLLS 560
           W +++AA   HG    A    +++L+ D  PD    L +LS
Sbjct: 479 WNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILS 519



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 152/354 (42%), Gaps = 53/354 (14%)

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
           S+  AVH  I+ +       + + LI  Y     +  A+ LFDK+   ++V +T M+S Y
Sbjct: 13  SFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAY 72

Query: 295 SRAGQVEDARLIFDQ--MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
           S AG ++ A  +F+   M  +D + ++AMI+ ++ ++    AL+LF +M+  G  PD  T
Sbjct: 73  SAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFT 132

Query: 353 MLSVISACAHLGVLD-QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS----------- 400
             SV+ A + +   +   Q++H  + K        V NA++  Y  C S           
Sbjct: 133 FSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMA 192

Query: 401 -------------------------------LESAREVFERMRRRNVISWTSMINAFAIH 429
                                          L +ARE+ E M     ++W +MI+ +   
Sbjct: 193 AARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHR 252

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G    A     +M    I  +  T+  V+ A S+AGL + GR++ A +      P    H
Sbjct: 253 GFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSG--H 310

Query: 490 Y-----GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
           +       ++ L+ R   L EA  + + MP   ++V W ++++ C     IE A
Sbjct: 311 FVLSVNNALITLYTRCGKLVEARRVFDKMP-VKDLVSWNAILSGCVNARRIEEA 363



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A SIF ++P          I  ++ +   +  LK+F +M  EGL    +++   + + + 
Sbjct: 363 ANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSV 422

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G Q+H    +LG  S   V   L+ MY  CG +  A  +F  M Y D V W+ M
Sbjct: 423 LGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAM 482

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           I    Q+G   + + L+E+M   ++ PD +    ILSACS AG +  G
Sbjct: 483 IAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEG 530



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 109/271 (40%), Gaps = 56/271 (20%)

Query: 9   KPLTLPTSTAISSCS---SLTHMKQTHAQILKLSHSHHSQNSLLL-KLLLTSFSLPTTTP 64
           +P     + AI+SCS   SL + +Q H+QI++L H     +SL +   L+T +S      
Sbjct: 407 EPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGH----DSSLSVGNALITMYSRCGLVE 462

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
           +    A ++F  +P   S   N  I A++       A++++ KML E +  DR +F  IL
Sbjct: 463 A----ADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTIL 518

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY-RDI 183
            A + A                                   G + + R  FD M     I
Sbjct: 519 SACSHA-----------------------------------GLVKEGRHYFDTMRVCYGI 543

Query: 184 VP----WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            P    +S +ID   + G+F E  N+ E M     EP   +   +L+ C   GN+  G  
Sbjct: 544 TPEEDHYSRLIDLLCRAGMFSEAKNVTESMPF---EPGAPIWEALLAGCWIHGNMELGIQ 600

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
             + +++     D    S L  MYA  G  D
Sbjct: 601 AADRLLELMPQQDGTYIS-LSNMYAALGQWD 630


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/600 (39%), Positives = 370/600 (61%), Gaps = 1/600 (0%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           I+  + R+  + + + +H    + G   DPF+   L+     C  I  A  +F      +
Sbjct: 52  IISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPN 111

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +  ++ +IDG+  +G + E + L+  M   ++ PD  +++ IL AC     L  G  VH 
Sbjct: 112 VYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHS 171

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
             +    + +  ++  ++ +Y  CG +  A+ +F++ + +++V ST M+S YS  G VE+
Sbjct: 172 RALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEE-MPEDVVASTVMISSYSDQGLVEE 230

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           A  +F ++  KD +CW+AMI G+  N     AL+ F  MQ   ++P++ T++ V+SAC+ 
Sbjct: 231 AGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQ 290

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           LG L+  + +H Y+ K     +L V NA+I+MY++CGS++ A+ VF+ M+ R+VI++ +M
Sbjct: 291 LGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTM 350

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I+  +++G +R A+  F  M    + P  VTF+GVL ACSH GLVD G EIF SM  +Y 
Sbjct: 351 ISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYR 410

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           + P+ EHYGCMVDL GR   L EA +L+ TM   P+ ++ G+L++AC++H  +EL E  A
Sbjct: 411 VEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVA 470

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           K+L        G  VLLS++YA   +W++  ++R  MKE G+ KE  CS IE+NNE++EF
Sbjct: 471 KELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEF 530

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
           L  D  H Q ++IYEKL E+   L+  GY P+    L D+ED EK   +  HSE+LA+CY
Sbjct: 531 LLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICY 590

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           GLIS++  + IR++KNLRVC DCH+ IKL++K+  R+IV+RDR RFH++++G CSC DYW
Sbjct: 591 GLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 131/513 (25%), Positives = 226/513 (44%), Gaps = 84/513 (16%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMKQT---HAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           S P    +L     IS      H+ Q    HAQ+++   + HSQ+  ++  LL S S   
Sbjct: 39  SNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIR---NGHSQDPFMVFELLRSCS--- 92

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
               ++ YA  IF     P   +    I     S     A++++ +ML+E +  D +   
Sbjct: 93  -KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMA 151

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM--- 178
            ILKA      L EG +VH    KLGF S+  V+  ++ +YG CG++ DAR +F++M   
Sbjct: 152 SILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPED 211

Query: 179 ---------SY------------------RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
                    SY                  +D V W+ MIDG+ +N   +  L  F  M+ 
Sbjct: 212 VVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQG 271

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
            NV P+E  +  +LSACS+ G L  G  VH ++    + L+  + + LI MY+ CG +D 
Sbjct: 272 ENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDE 331

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
           A+ +FD++  ++++    M+SG S  G+   A  +F  MV + L                
Sbjct: 332 AQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRL---------------- 375

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
                          +P  VT + V++AC+H G++D    I      ++   D RV   I
Sbjct: 376 ---------------RPTNVTFVGVLNACSHGGLVDFGFEIF-----HSMARDYRVEPQI 415

Query: 392 ------IDMYAKCGSLESAREVFERMRRR-NVISWTSMINAFAIHGDARNALIFFNKMKD 444
                 +D+  + G LE A ++   M+   + I   ++++A  +H +         +++D
Sbjct: 416 EHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELED 475

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
                +G T++ + +  + +G   E  ++ A M
Sbjct: 476 RGQADSG-TYVLLSHVYASSGKWKEAAQVRAKM 507



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 123/288 (42%), Gaps = 11/288 (3%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++FS++    +      I     +     AL+ F  M  E +  + F+   +L A ++
Sbjct: 231 AGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQ 290

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G  VH    K     + FV   L+ MY  CG I +A+ +FD+M  RD++ ++ M
Sbjct: 291 LGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTM 350

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDNN 248
           I G   NG   + + LF  M    + P  +    +L+ACS  G + +G E  H    D  
Sbjct: 351 ISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYR 410

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLF-------DKVLLKNLVVSTAMVSGYSRAGQVE 301
           V         ++ +    G ++ A  L        D ++L  L+ +  M        QV 
Sbjct: 411 VEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQV- 469

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
            A+ + D+  + D   +  +   YA +   +EA ++  +M+  GM+ +
Sbjct: 470 -AKELEDRG-QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKE 515


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/711 (35%), Positives = 391/711 (54%), Gaps = 43/711 (6%)

Query: 15  TSTAISSCSSLTHMKQTHAQILKLSHSHHSQ--NSLLLKLLLTSFSLPTTTPSSLYYALS 72
            S + SS  S+   +Q H  ILK      +   NSL+      +F L      S   A  
Sbjct: 201 VSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLV------AFYLKNQRVDS---ARK 251

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F ++        N  I     +   +  L VF++ML  G+ ID  +   +    A +  
Sbjct: 252 VFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRL 311

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           +  G  VH +G K  F  +      L+ MY  CG +  A+ +F +MS R +V ++ MI G
Sbjct: 312 ISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAG 371

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y + GL  E + LFEEM+   + PD   ++ +L+ C+R   L  G+ VHE+I +N++  D
Sbjct: 372 YAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFD 431

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             + + L+ MYA                               + G +++A L+F +M  
Sbjct: 432 IFVSNALMDMYA-------------------------------KCGSMQEAELVFSEMRV 460

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           KD+I W+ +I GY++N +  EAL LFN + +     PD+ T+  V+ ACA L   D+ + 
Sbjct: 461 KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE 520

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           IH YI +N +  D  V N+++DMYAKCG+L  A  +F+ +  ++++SWT MI  + +HG 
Sbjct: 521 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 580

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
            + A+  FN+M+   I+ + ++F+ +LYACSH+GLVDEG   F  M +E  I P  EHY 
Sbjct: 581 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 640

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           C+VD+  R   L +A   +E MP  P+  IWG+L+  CR+H +++LAE  A+++ +L+P+
Sbjct: 641 CIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPE 700

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
           + G  VL++NIYA+ ++W+ V  LRK + +RG+ K   CS IE+   V  F+  D S+ +
Sbjct: 701 NTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPE 760

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS 671
           T+ I   L +V + +   GY P    AL+D E+ EK E +  HSEKLA+  G+ISS    
Sbjct: 761 TENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGK 820

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            IR+ KNLRVC DCH   K +SK+  REIV+RD  RFH +KDG CSC+ +W
Sbjct: 821 IIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 208/414 (50%), Gaps = 33/414 (7%)

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
           ID  +   +L+  A ++ L +G +V       GF  D  + + L  MY  CG + +A  +
Sbjct: 92  IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRV 151

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           FD++     + W+++++   ++G F   + LF++M  S VE D    S +  + S   ++
Sbjct: 152 FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 211

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             GE +H FI+ +       + ++L+  Y                 LKN           
Sbjct: 212 HGGEQLHGFILKSGFGERNSVGNSLVAFY-----------------LKN----------- 243

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
               +V+ AR +FD+M E+D+I W+++I+GY  N   ++ L +F +M V G++ D  T++
Sbjct: 244 ---QRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIV 300

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           SV + CA   ++   + +H    K  F  + R  N ++DMY+KCG L+SA+ VF  M  R
Sbjct: 301 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR 360

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           +V+S+TSMI  +A  G A  A+  F +M++E I P+  T   VL  C+   L+DEG+ + 
Sbjct: 361 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH 420

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
                E ++         ++D++ +   ++EA ELV +     +++ W +++  
Sbjct: 421 -EWIKENDLGFDIFVSNALMDMYAKCGSMQEA-ELVFSEMRVKDIISWNTIIGG 472


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/603 (38%), Positives = 365/603 (60%), Gaps = 36/603 (5%)

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
           PP++KA      LL+G ++H L  KLGF  D FV   LV MY   G + DAR +FD M  
Sbjct: 1   PPVVKACGD---LLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPA 57

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           RD   W+ MI GY QNG   E L++ +EM++  V+ D + ++ +L  C++ G++  G+ +
Sbjct: 58  RDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLI 117

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H ++I + +  +                               L VS A+++ Y++ G +
Sbjct: 118 HLYVIKHGLEFE-------------------------------LFVSNALINMYAKFGSL 146

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG-MKPDKVTMLSVISA 359
             A+ +F  ++ KD++ W+ +I+GYA+N    EA++++  M+    + P++ T +S++ A
Sbjct: 147 GHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPA 205

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
            +H+G L Q  RIH  + KN    D+ V   +IDMY KCG L+ A  +F ++ R+N + W
Sbjct: 206 YSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPW 265

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            +MI+ + +HGD   AL  F +MK E + P+ +TF+ +L ACSH+GLV + +  F  M  
Sbjct: 266 NAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEE 325

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
           EY I P  +HYGCMVDLFGRA  L  A   ++ MP  P+   WG+L+ ACR+HG IEL +
Sbjct: 326 EYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGK 385

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
            A+++L ++D ++ G  VLLSNIYA   +W+ V ++R   ++RG+ K    S I +NN+V
Sbjct: 386 HASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKV 445

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
             F T +++H + ++IY +L ++ S++K  GYVPD    L D+E++EK  +++ HSE+LA
Sbjct: 446 DVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVLQDVEEDEKEHILMGHSERLA 505

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           + YG+IS+   + IRI KNLRVC DCH   K +S +  REI++RD +RFHH+K G CSC 
Sbjct: 506 IAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFISIITEREIIVRDSSRFHHFKGGTCSCG 565

Query: 720 DYW 722
           DYW
Sbjct: 566 DYW 568



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 186/416 (44%), Gaps = 42/416 (10%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           + +C  L   K+ H  +LKL        +  L  + + F L          A  +F  +P
Sbjct: 4   VKACGDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGD-------ARKLFDDMP 56

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
           A      N  I     +     AL +  +M  EG+ +D  +   +L   A+   +L G  
Sbjct: 57  ARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKL 116

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H    K G   + FV   L+ MY   G +  A+ +F  +  +D+V W+ +I GY QNGL
Sbjct: 117 IHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLL-IKDVVSWNTLITGYAQNGL 175

Query: 199 FDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
             E + ++  M +   + P++     IL A S  G L  G  +H  +I N +  D  + +
Sbjct: 176 ASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGT 235

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
            LI MY  CG +D A  LF +V  KN V   AM+S Y   G  E                
Sbjct: 236 CLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGE---------------- 279

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-IHLYI 376
                          +AL+LF EM+   +KPD +T +S++SAC+H G++  AQ   ++  
Sbjct: 280 ---------------KALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMME 324

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD 431
           ++      L+    ++D++ + G LE A    ++M  + +  +W +++NA  IHG+
Sbjct: 325 EEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGN 380


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/622 (37%), Positives = 362/622 (58%), Gaps = 32/622 (5%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
            L +F +ML  G+  D  +   ++   +    LL G  +HG   K  FG +  +   L+ 
Sbjct: 235 GLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLD 294

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY   G +  A  +F+ M  R +V W+ MI GY + GL D  + LF EM+   + PD   
Sbjct: 295 MYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFT 354

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           ++ IL AC+  G L  G+ VH +I +N +  D                            
Sbjct: 355 ITTILHACACTGLLENGKDVHNYIKENKMQSD---------------------------- 386

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
              L VS A++  Y++ G + DA  +F +M  KD++ W+ MI GY++N+ P EAL LF E
Sbjct: 387 ---LFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVE 443

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQ    KP+ +TM  ++ ACA L  L++ Q IH +I +N F  D  V NA++DMY KCG+
Sbjct: 444 MQY-NSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGA 502

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           L  AR +F+ +  ++++SWT MI  + +HG    A+  FN+M++  I+P+ V+FI +LYA
Sbjct: 503 LGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYA 562

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSH+GL+DEG   F  M N   I PK EHY C+VDL  RA  L +A + ++ MP  P+  
Sbjct: 563 CSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDAT 622

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           IWG+L+  CR++ +++LAE  A+ + +L+P++ G  VLL+NIYA+ ++W++V +LR+ + 
Sbjct: 623 IWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIG 682

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
            RG+ K   CS IE+  +V+ F+T D SH   ++I   L +  + +K  G+ P +  AL+
Sbjct: 683 RRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALI 742

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
             +D EK   +  HSEK+A+ +G++S      +R+ KNLRVC DCH   K +SK+  R+I
Sbjct: 743 KADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDI 802

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           ++RD  RFHH+KDG CSC+ +W
Sbjct: 803 ILRDSNRFHHFKDGSCSCRGHW 824



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 191/352 (54%), Gaps = 24/352 (6%)

Query: 199 FDEVLNLFEEMKMSNVEP----DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           F E+ NL   M++ N  P    +      +L  C+   ++  G  +H  I  N+V +D  
Sbjct: 78  FCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGV 137

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG---------------- 298
           L S L+ MY  CG +   + +FDKV  + + +   +++GY++ G                
Sbjct: 138 LGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELG 197

Query: 299 --QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
             +VE AR +FD++ ++D+I W++MISGY  N   ++ L LF +M + G+  D  TM+SV
Sbjct: 198 IRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV 257

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           ++ C++ G+L   + +H Y  K +FG +L +NN ++DMY+K G+L SA +VFE M  R+V
Sbjct: 258 VAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSV 317

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           +SWTSMI  +A  G +  ++  F++M+ E I P+  T   +L+AC+  GL++ G+++  +
Sbjct: 318 VSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVH-N 376

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
              E  +         ++D++ +   + +A  +   M    ++V W +++  
Sbjct: 377 YIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQ-VKDIVSWNTMIGG 427


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/711 (35%), Positives = 392/711 (55%), Gaps = 43/711 (6%)

Query: 15  TSTAISSCSSLTHMKQTHAQILKLSHSHHSQ--NSLLLKLLLTSFSLPTTTPSSLYYALS 72
            S + SS  S+   +Q H  ILK      +   NSL+      +F L      S   A  
Sbjct: 50  VSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLV------AFYLKNQRVDS---ARK 100

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F ++        N  I     +   +  L VF++ML  G+ ID  +   +    A +  
Sbjct: 101 VFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRL 160

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           +  G  VH +G K  F  +      L+ MY  CG +  A+ +F +MS R +V ++ MI G
Sbjct: 161 ISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAG 220

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y + GL  E + LFEEM+   + PD   ++ +L+ C+R   L  G+ VHE+I +N++  D
Sbjct: 221 YAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFD 280

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
                                          + VS A++  Y++ G +++A L+F +M  
Sbjct: 281 -------------------------------IFVSNALMDMYAKCGSMQEAELVFSEMRV 309

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           KD+I W+ +I GY++N +  EAL LFN + +     PD+ T+  V+ ACA L   D+ + 
Sbjct: 310 KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE 369

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           IH YI +N +  D  V N+++DMYAKCG+L  A  +F+ +  ++++SWT MI  + +HG 
Sbjct: 370 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 429

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
            + A+  FN+M+   I+ + ++F+ +LYACSH+GLVDEG   F  M +E  I P  EHY 
Sbjct: 430 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 489

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           C+VD+  R   L +A   +E MP  P+  IWG+L+  CR+H +++LAE  A+++ +L+P+
Sbjct: 490 CIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPE 549

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
           + G  VL++NIYA+ ++W+ V  LRK + +RG+ K   CS IE+   V  F+  D S+ +
Sbjct: 550 NTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPE 609

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS 671
           T+ I   L +V + +   GY P    AL+D E+ EK E +  HSEKLA+  G+ISS    
Sbjct: 610 TENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGK 669

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            IR+ KNLRVC DCH   K +SK+  REIV+RD  RFH +KDG CSC+ +W
Sbjct: 670 IIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 180/354 (50%), Gaps = 33/354 (9%)

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           FD++     + W+++++   ++G F   + LF++M  S VE D    S +  + S   ++
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             GE +H FI+ +       + ++L+  Y                 LKN           
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFY-----------------LKNQ---------- 93

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
               +V+ AR +FD+M E+D+I W+++I+GY  N   ++ L +F +M V G++ D  T++
Sbjct: 94  ----RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIV 149

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           SV + CA   ++   + +H    K  F  + R  N ++DMY+KCG L+SA+ VF  M  R
Sbjct: 150 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR 209

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           +V+S+TSMI  +A  G A  A+  F +M++E I P+  T   VL  C+   L+DEG+ + 
Sbjct: 210 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH 269

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
                E ++         ++D++ +   ++EA ELV +     +++ W +++  
Sbjct: 270 -EWIKENDLGFDIFVSNALMDMYAKCGSMQEA-ELVFSEMRVKDIISWNTIIGG 321


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/608 (38%), Positives = 360/608 (59%), Gaps = 32/608 (5%)

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA-RLM 174
           D F+ P ++KA A    L  G  +HG+ TK+   SD FV   L+ MYG CG + +A + +
Sbjct: 207 DNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRV 266

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           FD M  + +  W+ ++ GY QN    + L+L+ +M  S ++PD   +  +L ACSR  +L
Sbjct: 267 FDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSL 326

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
            YGE +H F + N +A+D  +  +L+++Y  CG                           
Sbjct: 327 HYGEEIHGFALRNGLAVDPFIGISLLSLYICCG--------------------------- 359

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
               +   A+++FD M  + L+ W+ MI+GY++N  P EA+ LF +M   G++P ++ ++
Sbjct: 360 ----KPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIM 415

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
            V  AC+ L  L   + +H +  K     D+ V+++IIDMYAK G +  ++ +F+R+R +
Sbjct: 416 CVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREK 475

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           +V SW  +I  + IHG  + AL  F KM    + P+  TF G+L ACSHAGLV++G E F
Sbjct: 476 DVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYF 535

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
             M N +NI PK EHY C+VD+ GRA  + +AL L+E MP  P+  IW SL+++CR+HG 
Sbjct: 536 NQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGN 595

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
           + L E  A +LL+L+P+     VL+SN++A   +W DV  +R  MK+ G+ K+  CS IE
Sbjct: 596 LGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIE 655

Query: 595 MNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWH 654
           +  +V+ FL  D    + +++ E    +  ++   GY PD  S L DLE+E+K  ++  H
Sbjct: 656 VGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGH 715

Query: 655 SEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDG 714
           SEKLA+ +GL+++ K   +R+ KNLR+C DCHN  K +SKV  R+IV+RD  RFHH++DG
Sbjct: 716 SEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDG 775

Query: 715 VCSCKDYW 722
           +CSC DYW
Sbjct: 776 ICSCGDYW 783



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/531 (23%), Positives = 248/531 (46%), Gaps = 56/531 (10%)

Query: 34  QILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAIS 93
           +I + S + +S +S+   +   S S  T    SL +A S  ++        S   I+ + 
Sbjct: 24  RITRKSKNKYSLHSIFTPIASLSLSAQTRQTKSLSFANSSTNR-----QFSSLHEIKKLC 78

Query: 94  WSHRPKHALKVFLKMLNEGLTIDRF----SFPPILKAIARAEGLLEGMQVHGL-GTKLGF 148
            S   K AL  FL+  ++ + +D      +   +L+A  + + +  G ++H +      F
Sbjct: 79  ESGNLKEALD-FLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQF 137

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
            +D  + T ++ MY  CG   D+R++FDK+  +++  W+ ++  Y +N LF++ +++F E
Sbjct: 138 CNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSE 197

Query: 209 M-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           +  ++  +PD   L  ++ AC+   +L  G+ +H      ++  D  + + LI MY  CG
Sbjct: 198 LISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCG 257

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
            ++                              E  + +FD M  K +  W+A++ GYA+
Sbjct: 258 LVE------------------------------EAVKRVFDLMDTKTVSSWNALLCGYAQ 287

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
           N+ P++AL L+ +M   G+ PD  T+ S++ AC+ +  L   + IH +  +N    D  +
Sbjct: 288 NSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFI 347

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
             +++ +Y  CG   +A+ +F+ M  R+++SW  MI  ++ +G    A+  F +M  + I
Sbjct: 348 GISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGI 407

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIF-----ASMTNEYNIPPKYEHYGCMVDLFGRANL 502
            P  +  + V  ACS    +  G+E+      A +T +  +         ++D++ +   
Sbjct: 408 QPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSS------IIDMYAKGGC 461

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGE-IELAEFAAKQL-LQLDPD 551
           +  +  + + +    +V  W  ++A   +HG   E  E   K L L L PD
Sbjct: 462 IGLSQRIFDRLR-EKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPD 511


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/638 (37%), Positives = 378/638 (59%), Gaps = 36/638 (5%)

Query: 116  DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
            + +S+  ++ A A+   L + +Q++    +    +    +T ++  Y   G+I  ARL+F
Sbjct: 426  NEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVAT----KTAMMTAYAQVGRIQKARLIF 481

Query: 176  DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE-------------------- 215
            D++   ++V W+ +I GY QNG+  E  +LF++M + N                      
Sbjct: 482  DEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALE 541

Query: 216  -----------PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
                       P +   +  LSAC+  G++  G  +H   I      ++++ + LI+MYA
Sbjct: 542  LLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYA 601

Query: 265  NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
             CG ++    +F  + +K+ V   +++SG S    ++DAR++F++M ++D++ W+A+IS 
Sbjct: 602  KCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISA 661

Query: 325  YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
            Y +  H + AL LF +M   G+KP+++T+ S++SAC +LG +   ++ H  I K  F   
Sbjct: 662  YVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTF 721

Query: 385  LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
            L V N++I MY KCG  E    VFE M   ++I+W +++   A +G  + A+  F +M+ 
Sbjct: 722  LFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEV 780

Query: 445  ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
            E I P+ ++F+GVL ACSHAGLVDEG   F SMT +Y I P   HY CMVDL GRA  L 
Sbjct: 781  EGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLS 840

Query: 505  EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
            EA  L+E MP  P+ VIW +L+ ACR+H  +EL +  A++L Q+        VLLSN++A
Sbjct: 841  EAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFA 900

Query: 565  KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVIS 624
                W  V E+RK MK++G+ KE   S I++ N+++ F+T DR+H Q ++IY  L E   
Sbjct: 901  SQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYG 960

Query: 625  ELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCED 684
              +  GY+PD +  L D+E+E+K+  +L+HSEKLA+ +G++S+   S I+I+KNLR+C D
Sbjct: 961  CFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNLRICGD 1020

Query: 685  CHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            CH F+K +SKV  R+I+IRD  RFHH++DG CSC DYW
Sbjct: 1021 CHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 188/366 (51%), Gaps = 18/366 (4%)

Query: 163 GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
           G  G++ +AR +F++M  RD+V W+ MI+GY QNG  DE   LF+     N+       +
Sbjct: 182 GRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR----TWT 237

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            +L+  ++ G +     V E + + NV       + +I+ Y   G +  A+ LFD++  K
Sbjct: 238 ILLTGYAKEGRIEEAREVFESMTERNVVS----WNAMISGYVQNGDLKNARKLFDEMPEK 293

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           N+    ++V+GY    ++ +AR +FDQM E++ + W  MISGY   +   EA  +F +M 
Sbjct: 294 NVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMC 353

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
               +PD+   + V+SA   L  L+    +     K  + GD+ V +AI++ Y + GSL+
Sbjct: 354 RTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLD 413

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            A   FE M  RN  SWT+MI AFA  G   +A+  + ++ ++++     T   ++ A +
Sbjct: 414 LAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV----ATKTAMMTAYA 469

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
             G + + R IF  + N     P    +  ++  + +  +L+EA +L + MP   N   W
Sbjct: 470 QVGRIQKARLIFDEILN-----PNVVAWNAIIAGYTQNGMLKEAKDLFQKMP-VKNSASW 523

Query: 523 GSLMAA 528
            +++A 
Sbjct: 524 AAMIAG 529



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 199/440 (45%), Gaps = 76/440 (17%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAIS-WSHRPKH--ALKVFLKMLNEGLTIDRFSFPPILKA 126
           A  +F Q+P    R S  ++  IS + H   +  A  VF+KM       D+  F  +L A
Sbjct: 314 ARELFDQMP---ERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSA 370

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
           I   + L     +  +  K G+  D  V + ++  Y   G +  A   F+ M  R+   W
Sbjct: 371 ITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSW 430

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + MI  + Q G  D+ + L+E +      P++ V +K                       
Sbjct: 431 TTMIAAFAQCGRLDDAIQLYERV------PEQTVATK----------------------- 461

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
                     + ++T YA  G +  A+ +FD++L  N+V   A+++GY++ G +++A+ +
Sbjct: 462 ----------TAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDL 511

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F +M  K+   W+AMI+G+ +N   +EAL+L  E+   G  P   +  S +SACA++G +
Sbjct: 512 FQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDV 571

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE------------------------ 402
           +  + IH    K     +  V N +I MYAKCG++E                        
Sbjct: 572 EIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGL 631

Query: 403 -------SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
                   AR VFE+M +R+V+SWT++I+A+   G    AL  F  M    I PN +T  
Sbjct: 632 SENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVT 691

Query: 456 GVLYACSHAGLVDEGREIFA 475
            +L AC + G +  G +  A
Sbjct: 692 SLLSACGNLGAIKLGEQFHA 711



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 195/457 (42%), Gaps = 76/457 (16%)

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
           T    L  A  +F ++P   S      I     +   + AL++ +++   G      SF 
Sbjct: 500 TQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFT 559

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL------------ 169
             L A A    +  G  +H L  K G   + +V  GL+ MY  CG +             
Sbjct: 560 SALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVK 619

Query: 170 -------------------DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
                              DAR++F+KM  RD+V W+ +I  Y Q G  +  L+LF +M 
Sbjct: 620 DTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDML 679

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
              ++P+++ ++ +LSAC   G +  GE  H  I          + ++LITMY  CG   
Sbjct: 680 ARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG--- 736

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
                                         ED   +F++M E DLI W+A++ G A+N  
Sbjct: 737 -----------------------------YEDGFCVFEEMPEHDLITWNAVLVGCAQNGL 767

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN- 389
            +EA+K+F +M+V G+ PD+++ L V+ AC+H G++D+    H       +G    V + 
Sbjct: 768 GKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGW-AHFNSMTQKYGIMPLVYHY 826

Query: 390 -AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDA----RNALIFFNKMK 443
             ++D+  + G L  A  + E M  + + + W +++ A  IH +     R A   F   K
Sbjct: 827 TCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTK 886

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
                P   T++ +    +  G+ D+  EI   M ++
Sbjct: 887 -----PKSATYVLLSNLFASQGMWDKVAEIRKLMKDQ 918



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 188/403 (46%), Gaps = 45/403 (11%)

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           +T I      G ++ A+ +F++++ +++V   +M++GYS+ G+V++ARL+FD  V K++ 
Sbjct: 175 NTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR 234

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            W+ +++GYA+    +EA ++F  M     + + V+  ++IS     G L  A+++   +
Sbjct: 235 TWTILLTGYAKEGRIEEAREVFESM----TERNVVSWNAMISGYVQNGDLKNARKLFDEM 290

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            +     ++   N+++  Y  C  +  ARE+F++M  RN +SW  MI+ +    D   A 
Sbjct: 291 PEK----NVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAW 346

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH----YGC 492
             F KM      P+   F+ VL A +  GL D   E+  S+     I   YE        
Sbjct: 347 DVFVKMCRTVARPDQSIFVVVLSAIT--GLDD--LELIGSL-RPIAIKTGYEGDVVVGSA 401

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           +++ + R   L  A+   ETMP   N   W +++AA    G ++     A QL +  P+ 
Sbjct: 402 ILNAYTRNGSLDLAMHFFETMP-ERNEYSWTTMIAAFAQCGRLD----DAIQLYERVPEQ 456

Query: 553 DGAL-VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
             A    +   YA+      VG ++K+   R I  E     +   N +    T +   K+
Sbjct: 457 TVATKTAMMTAYAQ------VGRIQKA---RLIFDEILNPNVVAWNAIIAGYTQNGMLKE 507

Query: 612 TDQIYEKL---NEVISELKPAGYVPDIHSALVDLEDEEKREVI 651
              +++K+   N        AG+V          ++EE RE +
Sbjct: 508 AKDLFQKMPVKNSASWAAMIAGFV----------QNEESREAL 540


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/717 (36%), Positives = 405/717 (56%), Gaps = 42/717 (5%)

Query: 10  PLTLPTSTAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P +    +A+++C   ++ K   + HA +LK   S HS    +   L+  ++     P  
Sbjct: 282 PNSYTIVSALTACDGFSYAKLGKEIHASVLK--SSTHSSELYVCNALIAMYTRCGKMPQ- 338

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
              A  I  Q+        N  I+    +   K AL+ F  M+  G   D  S   I+ A
Sbjct: 339 ---AERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA 395

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
             R   LL GM++H    K G+ S+  V   L+ MY  C         F +M  +D++ W
Sbjct: 396 SGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISW 455

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +I GY QN    E L LF ++    +E DEM+L  IL A S   ++   + +H  I+ 
Sbjct: 456 TTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILR 515

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
             + LD  +Q+ L+ +Y  C  M                       GY        A  +
Sbjct: 516 KGL-LDTVIQNELVDVYGKCRNM-----------------------GY--------ATRV 543

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F+ +  KD++ W++MIS  A N +  EA++LF  M   G+  D V +L ++SA A L  L
Sbjct: 544 FESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSAL 603

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           ++ + IH Y+ +  F  +  +  A++DMYA CG L+SA+ VF+R+ R+ ++ +TSMINA+
Sbjct: 604 NKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAY 663

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
            +HG  + A+  F+KM+ E++ P+ ++F+ +LYACSHAGL+DEGR     M +EY + P 
Sbjct: 664 GMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPW 723

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            EHY C+VD+ GRAN + EA E V+ M   P   +W +L+AACR H E E+ E AA++LL
Sbjct: 724 PEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLL 783

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           +L+P + G LVL+SN++A+  RW DV ++R  MK  G+ K   CS IEM+ +V++F   D
Sbjct: 784 ELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARD 843

Query: 607 RSHKQTDQIYEKLNEVISEL-KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           +SH ++ +IYEKL+EV  +L +  GYV D    L ++++ EK +++  HSE++A+ YGL+
Sbjct: 844 KSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLL 903

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            +   +C+RI KNLRVC DCH F KLVSK++ R+IV+RD  RFHH++ G+CSC D W
Sbjct: 904 RTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 119/503 (23%), Positives = 215/503 (42%), Gaps = 52/503 (10%)

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT----------IDRFSFPPILKA 126
           IP  PS   N F ++      P   L  F  +L E             ++ F++  +L+ 
Sbjct: 32  IPTEPSCRRNPFRQSNQPVQVPSPKLACFDGVLTEAFQRLDVSENNSPVEAFAY--VLEL 89

Query: 127 IARAEGLLEGMQVHG--LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
             +   + +G Q+H     T   F  D F+   LV MYG CG + DA  +FD+M  R   
Sbjct: 90  CGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAF 148

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ MI  Y  NG     L L+  M++  V         +L AC++  ++  G  +H  +
Sbjct: 149 AWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLL 208

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           +         + + L++MYA    +  A+ LFD               G+   G      
Sbjct: 209 VKLGYHSTGFIVNALVSMYAKNDDLSAARRLFD---------------GFQEKG------ 247

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                    D + W++++S Y+ +    E L+LF EM + G  P+  T++S ++AC    
Sbjct: 248 ---------DAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFS 298

Query: 365 VLDQAQRIHLYIDKNA-FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
                + IH  + K++    +L V NA+I MY +CG +  A  +  +M   +V++W S+I
Sbjct: 299 YAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLI 358

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
             +  +   + AL FF+ M       + V+   ++ A      +  G E+ A +  ++  
Sbjct: 359 KGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVI-KHGW 417

Query: 484 PPKYEHYGCMVDLFGRANLL----REALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
               +    ++D++ + NL     R  L + +    +   VI G     C V   +EL  
Sbjct: 418 DSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEA-LELFR 476

Query: 540 FAAKQLLQLDPDHDGALVLLSNI 562
             AK+ +++D    G+++  S++
Sbjct: 477 DVAKKRMEIDEMILGSILRASSV 499


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/514 (42%), Positives = 341/514 (66%)

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M++ +V PD    S +L AC +  ++  G+ +H          +  LQ+ ++ +Y  CG 
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           M  A  LF+K+  ++ V    +++  ++ G ++ A   F +M  K++  W++MISG+ + 
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
             P EA+ LF +++   ++P++VT++SV++ACA LG LD  + +H Y  K+ F  ++ V 
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVC 180

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           N +IDMY KCG LE+AR VF  M  R V+SW++MI   A+HG A  AL  F++M    + 
Sbjct: 181 NTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVK 240

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
           PNGVTFIG+L+ACSH GL+DEGR  FASMT +Y + P+ EHYGC+VDLF RA LL EA E
Sbjct: 241 PNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHE 300

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
            + +MP  PN V+WG+L+  C+VH  I+LAE A K L +LDP +DG  V++SNIYA+ +R
Sbjct: 301 FILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAER 360

Query: 569 WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
           W+D   +RK MK+RG+ K    S I +N  V+EF+  D++H Q + I +  ++++ ++K 
Sbjct: 361 WEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKR 420

Query: 629 AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
            GY P     L+D+E++EK + +  HSEKLA+ +GL+++ + + IRI+KNLRVCEDCH  
Sbjct: 421 RGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAA 480

Query: 689 IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +K++S + +REI++RDR RFH ++DG CSC+D+W
Sbjct: 481 LKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 176/348 (50%), Gaps = 66/348 (18%)

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           D F+   +LKA  +   ++ G  +HGL  KLGFGS+ F+Q  ++ +YG CG++ DA L+F
Sbjct: 9   DTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLF 68

Query: 176 DKMSYRDIVPWSV-------------------------------MIDGYFQNGLFDEVLN 204
           +KM  RD V W++                               MI G+ Q G  +E ++
Sbjct: 69  EKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAID 128

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           LF +++   V P+E+ +  +L+AC+  G+L  G  VHE+   +    + H+ +TLI MY 
Sbjct: 129 LFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYV 188

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
            CGC++ A+ +F ++  + +V  +AM++G +  GQ E                       
Sbjct: 189 KCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAE----------------------- 225

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
                   EAL LF+EM   G+KP+ VT + ++ AC+H+G++D+ +R    +  + +G  
Sbjct: 226 --------EALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTAD-YGVI 276

Query: 385 LRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
            ++ +   ++D++++ G LE A E    M  + N + W +++    +H
Sbjct: 277 PQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVH 324



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 119/278 (42%), Gaps = 38/278 (13%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A   F ++P    R     I       +P  A+ +F+K+ +E +  +  +   +L A A 
Sbjct: 95  AYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACAD 154

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G  VH   TK GF  +  V   L+ MY  CG + +AR +F +M  R +V WS M
Sbjct: 155 LGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAM 214

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G   +G  +E L LF EM    V+P+ +    +L ACS  G           +ID   
Sbjct: 215 IAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMG-----------LIDEGR 263

Query: 250 ALDAHLQST--LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA-RLI 306
              A + +   +I    + GC                     +V  +SRAG +E+A   I
Sbjct: 264 RFFASMTADYGVIPQIEHYGC---------------------VVDLFSRAGLLEEAHEFI 302

Query: 307 FDQMVEKDLICWSAMISG---YAENNHPQEALKLFNEM 341
               ++ + + W A++ G   +   +  +EA+K  +E+
Sbjct: 303 LSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSEL 340


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/734 (34%), Positives = 399/734 (54%), Gaps = 78/734 (10%)

Query: 21  SCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAP 80
           S  S +  +Q HAQ+LK   +    N  LL  + +  +L       L+ +L +F+ I  P
Sbjct: 18  SIKSRSQAQQLHAQVLKF-QASSLCNLSLLLSIYSHINL-------LHDSLRLFNTIHFP 69

Query: 81  PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVH 140
           P+      IR  +    P  +L  F+ ML  GL  D   FP +LK+ A    L  G  +H
Sbjct: 70  PALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLH 129

Query: 141 GLGTKLGFGSDPFVQTGLVGMYG-------------ACGKILD----------------- 170
           G   ++G   D +    L+ MY                G++ D                 
Sbjct: 130 GYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSE 189

Query: 171 --ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228
              R +F+ M  +D+V W+ +I G  +NGL++E L +  EM  +N++PD   LS +L   
Sbjct: 190 DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLI 249

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
           +   ++S G+ +H   I   +  D ++ S+LI MYA C                      
Sbjct: 250 AENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT--------------------- 288

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
                     +V D+  +F  + E+D I W+++I+G  +N    E L+ F +M +  +KP
Sbjct: 289 ----------RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKP 338

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
              +  S++ ACAHL  L   +++H YI +N F  ++ + ++++DMYAKCG++ +A+++F
Sbjct: 339 KSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIF 398

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
           +RMR R+++SWT+MI   A+HG A +A+  F +M+ E I         VL ACSH GLVD
Sbjct: 399 DRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVD 451

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           E  + F SMT ++ I P  EHY  + DL GRA  L EA + +  M   P   IW +L++A
Sbjct: 452 EAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSA 511

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           CRVH  I++AE  A ++L++DP++ GA +LL+NIY+  +RW++  + R SM+  GI K  
Sbjct: 512 CRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTP 571

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
           ACS IE+ N+VY F+  D SH   ++I E +  ++  ++  GYVPD      D+E+E+K+
Sbjct: 572 ACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKK 631

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
            ++  HSE+LA+ +G+I++     IR+ KNLRVC DCH   K +SK+  REIV+RD +RF
Sbjct: 632 YLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRF 691

Query: 709 HHYKDGVCSCKDYW 722
           HH+K+G CSC DYW
Sbjct: 692 HHFKNGTCSCGDYW 705


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/778 (33%), Positives = 403/778 (51%), Gaps = 87/778 (11%)

Query: 25  LTHMKQTHAQILKLS---HSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPP 81
           L + +Q H QI   S   H H   +S      L  + +   + + +  A  +F QIP P 
Sbjct: 15  LINWRQRHRQIRSFSPHPHPHRVSDSDAAATQLARYHI---SRNEIQLARHVFDQIPKPS 71

Query: 82  SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG 141
             + N  IR  +WS   + ++ ++L ML  G+T   F+FP +LKA +  + L  G  +H 
Sbjct: 72  VVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHT 131

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY--RDIVPWSVMIDGYFQNGLF 199
               LG   D +V T L+ MY  CG +  A+ +F+ +S+  RDIV W+ MI  +  + L 
Sbjct: 132 HAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALH 191

Query: 200 DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259
            + ++   +M+ + V P+   L  IL    +A  L  G+A+H + I N    +  LQ+ L
Sbjct: 192 AQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTAL 251

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV-------- 311
           + MYA C  +  A+ +F+ V  KN V  +AM+ GY     + DA  ++D M+        
Sbjct: 252 LDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPT 311

Query: 312 --------------------------------EKDLICWSAMISGYAENNHPQEALKLFN 339
                                           + D    +++IS YA+      A+   +
Sbjct: 312 PATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLD 371

Query: 340 EMQVCGMKPDKVTMLSVISAC-----------------------------------AHLG 364
           EM    +  D V+  ++IS C                                   +HL 
Sbjct: 372 EM----IAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLA 427

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L      H Y     F  D  + NAIIDMY+KCG +  +RE+F+RM+ R++ISW +MI 
Sbjct: 428 ALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMII 487

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
            + IHG    AL  F +++   + P+ VT I VL ACSH+GLV EG+  F+SM+  +NI 
Sbjct: 488 GYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIK 547

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P+  HY CMVDL  RA  L EA   ++ MPF PNV IWG+L+AACR H  IE+ E  +K+
Sbjct: 548 PRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKK 607

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           +  L P+  G  VL+SNIY+   RW D   +R   +  G  K   CS +E++  ++ F+ 
Sbjct: 608 IQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIG 667

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
             +SH Q+  I +KL E++ ++K  GY  D    L D+E+EEK +++L+HSEK+A+ +G+
Sbjct: 668 GHQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGI 727

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +++   S I + KNLR+C DCH+ IK ++ +  REI +RD +RFHH+KDG+C+C+D+W
Sbjct: 728 LNTSPSSRILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/573 (41%), Positives = 358/573 (62%), Gaps = 25/573 (4%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE-----VLNLFEEMKMSN--VEPDEMVLSK 223
           A  +F++M  R+   W+ +I G+ ++   DE      + LF EM MS+  VEP+      
Sbjct: 78  AHKIFNQMPQRNCFSWNTIIRGFSES---DEDKALIAITLFYEM-MSDEFVEPNRFTFPS 133

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK-VLLK 282
           +L AC++ G +  G+ +H   +      D  + S L+ MY  CG M  A+ LF K ++ K
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193

Query: 283 NLVVST-------------AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
           ++VV T              M+ GY R G  + AR++FD+M ++ ++ W+ MISGY+ N 
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389
             ++A+++F EM+   ++P+ VT++SV+ A + LG L+  + +HLY + +    D  + +
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGS 313

Query: 390 AIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449
           A+IDMY+KCG +E A  VFER+ R NVI+W++MIN FAIHG A +A+  F KM+   + P
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRP 373

Query: 450 NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
           + V +I +L ACSH GLV+EGR  F+ M +   + P+ EHYGCMVDL GR+ LL EA E 
Sbjct: 374 SDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEF 433

Query: 510 VETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW 569
           +  MP  P+ VIW +L+ ACR+ G +E+ +  A  L+ + P   GA V LSN+YA    W
Sbjct: 434 ILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNW 493

Query: 570 QDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPA 629
            +V E+R  MKE+ I K+  CS I+++  ++EF+  D SH +  +I   L E+  +L+ A
Sbjct: 494 SEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLA 553

Query: 630 GYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFI 689
           GY P     L++LE+E+K  V+ +HSEK+A  +GLIS+     IRIVKNLR+CEDCH+ I
Sbjct: 554 GYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSI 613

Query: 690 KLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KL+SKVY R+I +RDR RFHH++DG CSC DYW
Sbjct: 614 KLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 216/464 (46%), Gaps = 84/464 (18%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           I++C ++  + Q HA  +K   S   +++L    +L   +        L YA  IF+Q+P
Sbjct: 30  INNCRTIRDLSQIHAVFIK---SGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMP 86

Query: 79  APPSRVSNKFIRAISWSHRPKH--ALKVFLKML-NEGLTIDRFSFPPILKAIARAEGLLE 135
                  N  IR  S S   K   A+ +F +M+ +E +  +RF+FP +LKA A+   + E
Sbjct: 87  QRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQE 146

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD------------------------- 170
           G Q+HGL  K GFG D FV + LV MY  CG + D                         
Sbjct: 147 GKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDG 206

Query: 171 --------------------ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
                               AR++FDKM  R +V W+ MI GY  NG F + + +F EMK
Sbjct: 207 EIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK 266

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
             ++ P+ + L  +L A SR G+L  GE +H +  D+ + +D  L S LI MY+ CG ++
Sbjct: 267 KGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIE 326

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            A  +F+++  +N++  +AM++G++  GQ  D                            
Sbjct: 327 KAIHVFERLPRENVITWSAMINGFAIHGQAGD---------------------------- 358

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNN 389
              A+  F +M+  G++P  V  +++++AC+H G++++ +R     +  +     +    
Sbjct: 359 ---AIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYG 415

Query: 390 AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDA 432
            ++D+  + G L+ A E    M  + + + W +++ A  + G+ 
Sbjct: 416 CMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNV 459



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 15/108 (13%)

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALI----FFNKMKDESIDPNGVTFIG 456
           L+ A ++F +M +RN  SW ++I  F+   D   ALI    F+  M DE ++PN  TF  
Sbjct: 75  LDYAHKIFNQMPQRNCFSWNTIIRGFS-ESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
           VL AC+  G + EG++I       + +  KY   G   D F  +NL+R
Sbjct: 134 VLKACAKTGKIQEGKQI-------HGLALKYGFGG---DEFVMSNLVR 171


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/644 (39%), Positives = 369/644 (57%), Gaps = 36/644 (5%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I  ++ S     AL  F  M    L   R SFP  +KA +    +  G Q H     
Sbjct: 45  NSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFV 104

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
            G+ SD FV + L+ MY  CGK+ DAR +FD++  R+IV W+ MI GY  NG   + ++L
Sbjct: 105 FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSL 164

Query: 206 FEEMKMSNVEPDE------MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259
           F+++ +   + D+      M L  ++SACSR       E++H F+I         + +TL
Sbjct: 165 FKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTL 224

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWS 319
           +  YA  G                              G V  AR IFDQ+V+KD + ++
Sbjct: 225 LDAYAKGG-----------------------------EGGVAVARKIFDQIVDKDRVSYN 255

Query: 320 AMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +++S YA++    EA ++F  + +   +  + +T+ +V+ A +H G L   + IH  + +
Sbjct: 256 SIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR 315

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
                D+ V  +IIDMY KCG +E+AR+ F+RM+ +NV SWT+MI  + +HG A  AL  
Sbjct: 316 MGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALEL 375

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F  M D  + PN +TF+ VL ACSHAGL  EG   F +M   + + P  EHYGCMVDL G
Sbjct: 376 FPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLG 435

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558
           RA  L++A +L++ M   P+ +IW SL+AACR+H  +ELAE +  +L +LD  + G  +L
Sbjct: 436 RAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYML 495

Query: 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEK 618
           LS+IYA   RW+DV  +R  MK RG++K    S +E+N EV+ FL  D  H Q ++IYE 
Sbjct: 496 LSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEF 555

Query: 619 LNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKN 678
           L E+  +L  AGYV +  S   D+++EEK   +  HSEKLA+ +G++++   S + +VKN
Sbjct: 556 LAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKN 615

Query: 679 LRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LRVC DCHN IKL+SK+  RE V+RD  RFHH+KDG CSC DYW
Sbjct: 616 LRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 103/188 (54%), Gaps = 7/188 (3%)

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK-DLICWSAMISGYAENNHPQEALKLFNE 340
           K L  S + +    R  + ++   +F++ V+K D+  W+++I+  A +    EAL  F+ 
Sbjct: 7   KALFCSVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSS 66

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M+   + P + +    I AC+ L  +   ++ H       +  D+ V++A+I MY+ CG 
Sbjct: 67  MRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGK 126

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM------KDESIDPNGVTF 454
           LE AR+VF+ + +RN++SWTSMI  + ++G+A +A+  F  +       D+++  + +  
Sbjct: 127 LEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGL 186

Query: 455 IGVLYACS 462
           + V+ ACS
Sbjct: 187 VSVISACS 194



 Score = 44.3 bits (103), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 10/152 (6%)

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
           + +V SW S+I   A  GD+  AL+ F+ M+  S+ P   +F   + ACS    +  G++
Sbjct: 38  KTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQ 97

Query: 473 IFASMTNEYNIPPKYEH----YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
                T++      Y+        ++ ++     L +A ++ + +P   N+V W S++  
Sbjct: 98  -----THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRNIVSWTSMIRG 151

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560
             ++G    A    K LL  + D D A+ L S
Sbjct: 152 YDLNGNALDAVSLFKDLLVDENDDDDAMFLDS 183


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/492 (45%), Positives = 322/492 (65%), Gaps = 32/492 (6%)

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
            ++  GE +H  +I +      ++Q++L+ +YANCG                        
Sbjct: 2   ADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCG------------------------ 37

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
                   V  A  +FD+M EKDL+ W+++I+G+AEN  P+EAL L+ EM   G+KPD  
Sbjct: 38  -------DVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGF 90

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           T++S++SACA +G L   +R+H+Y+ K     +L  +N ++D+YA+CG +E A+ +F+ M
Sbjct: 91  TIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 150

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEG 470
             +N +SWTS+I   A++G  + A+  F  M+  E + P  +TF+G+LYACSH G+V EG
Sbjct: 151 VDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEG 210

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
            E F  M  EY I P+ EH+GCMVDL  RA  +++A E +++MP  PNVVIW +L+ AC 
Sbjct: 211 FEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACT 270

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
           VHG+ +LAEFA  Q+LQL+P+H G  VLLSN+YA ++RW DV ++RK M   G+ K    
Sbjct: 271 VHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGH 330

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
           S +E+ N V+EFL  D+SH Q+D IY KL E+   L+  GYVP I +  VD+E+EEK   
Sbjct: 331 SLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENA 390

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           +++HSEK+A+ + LIS+ + S I +VKNLRVC DCH  IKLVSKVY REIV+RDR+RFHH
Sbjct: 391 VVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHH 450

Query: 711 YKDGVCSCKDYW 722
           +K+G CSC+DYW
Sbjct: 451 FKNGSCSCQDYW 462



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 169/319 (52%), Gaps = 38/319 (11%)

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G  +H +  + GFGS  +VQ  L+ +Y  CG +  A  +FDKM  +D+V W+ +I+G+ +
Sbjct: 7   GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 66

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           NG  +E L L+ EM    ++PD   +  +LSAC++ G L+ G+ VH ++I   +  + H 
Sbjct: 67  NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHS 126

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            + L+ +YA CG ++ AK LFD+++ KN V                              
Sbjct: 127 SNVLLDLYARCGRVEEAKTLFDEMVDKNSV------------------------------ 156

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVC-GMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
             W+++I G A N   +EA++LF  M+   G+ P ++T + ++ AC+H G++ +      
Sbjct: 157 -SWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFR 215

Query: 375 YIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGD 431
            + +  +  + R+ +   ++D+ A+ G ++ A E  + M  + NV+ W +++ A  +HGD
Sbjct: 216 RM-REEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGD 274

Query: 432 ARNALIFFNKMKDESIDPN 450
           +   L  F +++   ++PN
Sbjct: 275 S--DLAEFARIQILQLEPN 291



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 124/287 (43%), Gaps = 44/287 (15%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P       N  I   + + +P+ AL ++ +M ++G+  D F+   +L A A+
Sbjct: 42  AYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAK 101

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G +VH    K+G   +      L+ +Y  CG++ +A+ +FD+M  ++ V W+ +
Sbjct: 102 IGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSL 161

Query: 190 IDGYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACSRAGNLSYG-----EAVHEF 243
           I G   NG   E + LF+ M+ +  + P E+    IL ACS  G +  G         E+
Sbjct: 162 IVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEY 221

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
            I+  +               + GC                     MV   +RAGQV+ A
Sbjct: 222 KIEPRI--------------EHFGC---------------------MVDLLARAGQVKKA 246

Query: 304 RLIFDQM-VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
                 M ++ +++ W  ++   A   H    L  F  +Q+  ++P+
Sbjct: 247 YEYIKSMPMQPNVVIWRTLLG--ACTVHGDSDLAEFARIQILQLEPN 291


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/546 (41%), Positives = 347/546 (63%), Gaps = 9/546 (1%)

Query: 186 WSVMIDGYFQ-----NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           W+ +I  + Q      G     +++F  M+   V+PD      +L + +    L  G +V
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H  I+   +A+D  +Q++LI+MY++CG +  A+ +FD++   +L    ++++   +AG V
Sbjct: 87  HAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLV 146

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM---KPDKVTMLSVI 357
           + AR +F  M E+++I WS MI+GY      +EAL LF EMQ+ G+   +P++ TM  V+
Sbjct: 147 DMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVL 206

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNV 416
           +AC  LG L+  +  H YIDK     D+ +  A+IDMYAKCGS+E A  VF  +   ++V
Sbjct: 207 AACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDV 266

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           ++W++MI+  A+HG A   +  F+KM ++ + PN VTF+ V  AC H GLV EG++    
Sbjct: 267 MAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRR 326

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           MT +Y+I P  +HYGCMVDL+GRA  ++EA  +V++MP  P+V++WG+L++  R+HG+IE
Sbjct: 327 MTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIE 386

Query: 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMN 596
             E A K+L++L+P + GA VLLSN+YAK  RW+DV  +R  M+  GI K   CS IE+ 
Sbjct: 387 TCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVG 446

Query: 597 NEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSE 656
             ++EF   D SH +T QI+  L E++  LK  GYV +    L+DL++E K   +  HSE
Sbjct: 447 GVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSE 506

Query: 657 KLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVC 716
           KLAL YG + +   + IRIVKNLR+C DCH  IK++SKV+ REI++RD  RFHH+  G+C
Sbjct: 507 KLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLC 566

Query: 717 SCKDYW 722
           SC+DYW
Sbjct: 567 SCRDYW 572



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/445 (26%), Positives = 204/445 (45%), Gaps = 76/445 (17%)

Query: 59  LPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHR----PKHA-LKVFLKMLNEGL 113
           LPT   SS +  L  FS  P   S + N  IRA   +      P H+ + +F++M   G+
Sbjct: 3   LPTRLISSTHPTLH-FSH-PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGV 60

Query: 114 TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
             D  +FP +L++ A    L  G  VH    + G   DPFVQT L+ MY +CG +  AR 
Sbjct: 61  QPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQ 120

Query: 174 MFDK-------------------------------MSYRDIVPWSVMIDGYFQNGLFDEV 202
           +FD+                               M  R+++ WS MI+GY + G + E 
Sbjct: 121 VFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEA 180

Query: 203 LNLFEEMKM---SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259
           L LF EM+M   ++V P+E  +S +L+AC R G L +G+  H +I    + +D  L + L
Sbjct: 181 LALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTAL 240

Query: 260 ITMYANCGCMDMAKGLFDKVLL-KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           I MYA CG ++ A  +F  +   K+++  +AM+SG +  G  E+   +F +M+ +     
Sbjct: 241 IDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQ----- 295

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ-RIHLYID 377
                                     G++P+ VT L+V  AC H G++ + +  +    +
Sbjct: 296 --------------------------GVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTE 329

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNAL 436
             +    ++    ++D+Y + G ++ A  V + M    +V+ W ++++   +HGD     
Sbjct: 330 DYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCE 389

Query: 437 IFFNKMKD-ESIDPNGVTFIGVLYA 460
           +   K+ + E  +      +  +YA
Sbjct: 390 LALKKLIELEPTNSGAYVLLSNVYA 414


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/624 (38%), Positives = 351/624 (56%), Gaps = 31/624 (4%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + +LK +  ML E +   R ++  +L A      L +G Q+H    +  + SD  V T L
Sbjct: 212 EESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTAL 271

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
             MY  CG   DAR +F+ +SYRD++ W+ MI G+  +G  +E    F  M    V PD 
Sbjct: 272 TKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDR 331

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
              + +LSAC+R G L+ G+ +H     + +  D    + LI MY+  G M  A+ +FD+
Sbjct: 332 ATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDR 391

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +  +++V  T ++  Y+   QV ++   F QM+++                         
Sbjct: 392 MPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQ------------------------- 426

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
                 G+K +K+T + V+ AC++   L   + IH  + K     DL V NA++ MY KC
Sbjct: 427 ------GVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKC 480

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           GS+E A  VFE M  R+V++W ++I     +G    AL  +  MK E + PN  TF+ VL
Sbjct: 481 GSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVL 540

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            AC    LV+EGR  FA M+ +Y I P  +HY CMVD+  RA  LREA +++ T+P  P+
Sbjct: 541 SACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPS 600

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
             +WG+L+AACR+H  +E+ E AA+  L+L+P + G  V LS IYA    W+DV +LRK 
Sbjct: 601 AAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKF 660

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           MKERG+ KE   S IE+  EV+ F+  D+SH +T +IY +L  +  ++K  GYVPD    
Sbjct: 661 MKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFV 720

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           + DL+DE K   +  HSEKLA+ YGLIS+   + IRI KNLRVC DCH   K +SK+  R
Sbjct: 721 MHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKR 780

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EI+ RD  RFHH+K+G CSC DYW
Sbjct: 781 EIIARDAHRFHHFKNGECSCGDYW 804



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 125/417 (29%), Positives = 222/417 (53%), Gaps = 33/417 (7%)

Query: 111 EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD 170
           +G  +D + +  +L++  +A+ L  G QVH    + G   + ++   L+ +Y  CG + +
Sbjct: 22  KGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNE 81

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           AR +FDK S + +V W+VMI GY   GL  E  NLF  M+   +EPD+     ILSACS 
Sbjct: 82  ARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSS 141

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
              L++G  +H  +++  +A D  + + LI+MYA CG +  A+ +FD             
Sbjct: 142 PAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFD------------- 188

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
                              M  +D + W+ +   YAE+ + +E+LK ++ M    ++P +
Sbjct: 189 ------------------AMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSR 230

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           +T ++V+SAC  L  L++ ++IH +I ++ +  D+RV+ A+  MY KCG+ + AREVFE 
Sbjct: 231 ITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFEC 290

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           +  R+VI+W +MI  F   G    A   F++M +E + P+  T+  VL AC+  G +  G
Sbjct: 291 LSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARG 350

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
           +EI A    +  +         +++++ +A  +++A ++ + MP   +VV W +L+ 
Sbjct: 351 KEIHARAAKD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLLG 405



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 177/341 (51%), Gaps = 37/341 (10%)

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
           K+L +C +A +L+ G+ VHE I+   V  + ++ +TL+ +YA+CG               
Sbjct: 33  KLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCG--------------- 77

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
                            V +AR +FD+   K ++ W+ MISGYA     QEA  LF  MQ
Sbjct: 78  ----------------SVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQ 121

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
              ++PDK T +S++SAC+   VL+  + IH+ + +     D  V NA+I MYAKCGS+ 
Sbjct: 122 QERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVR 181

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            AR VF+ M  R+ +SWT++  A+A  G    +L  ++ M  E + P+ +T++ VL AC 
Sbjct: 182 DARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACG 241

Query: 463 HAGLVDEGREIFASMT-NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI 521
               +++G++I A +  +EY+   +      +  ++ +    ++A E+ E + +  +V+ 
Sbjct: 242 SLAALEKGKQIHAHIVESEYHSDVRVS--TALTKMYMKCGAFKDAREVFECLSYR-DVIA 298

Query: 522 WGSLMAACRVHGEIELAEFAAKQLLQ--LDPDHDGALVLLS 560
           W +++      G++E A     ++L+  + PD      +LS
Sbjct: 299 WNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLS 339


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/682 (35%), Positives = 380/682 (55%), Gaps = 33/682 (4%)

Query: 41  SHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKH 100
           S HS +  +   L+ ++    T   SL  A  +F  +P       N  I A S S R   
Sbjct: 39  SEHSLDVFVNTALVNTY----TKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGE 94

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A  +F +M +EG   DR +F  IL A    E L  G  V    ++  F  D FV T L+ 
Sbjct: 95  AFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALIT 154

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  C    +A  +F +M  ++++ WS +I  +  +G   E L  F  M+   + P+ + 
Sbjct: 155 MYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVT 214

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
              +L+  +    L     +H  I ++                          GL D   
Sbjct: 215 FISLLNGFTTPSGLEELSRIHLLITEH--------------------------GLDDTTT 248

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
           + N +V+   V G    G+++ A +I  +M E+ +  W+ +I+GY  +   +EAL+ +  
Sbjct: 249 MSNALVN---VYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQR 305

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           +Q+  +  DKVT +SV++AC     L + + IH    +     D+ V NA+ +MY+KCGS
Sbjct: 306 LQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGS 365

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E+AR +F+ M  R+ +SW  M+ A+A HG++   L    KM+ E +  NG+TF+ VL +
Sbjct: 366 MENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSS 425

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSHAGL+ EG + F S+ ++  I  K EHYGC+VDL GRA  L+EA + +  MP  P +V
Sbjct: 426 CSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIV 485

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
            W SL+ ACRVH +++  + AA++LL+LDP +  A V+LSNIY++   W++  +LR++M 
Sbjct: 486 TWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMA 545

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
            R + K    S I++ N+V+EF   D SH +  +IY+K+ E+   ++ AGYVPD    L 
Sbjct: 546 SRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLH 605

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D+++E+K  ++ +HSEKLA+ +GLIS+ + S + I KNLRVCEDCH   K +SK+  REI
Sbjct: 606 DVDEEQKESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTATKFISKITGREI 665

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           V+RD  RFHH++DG CSCKDYW
Sbjct: 666 VVRDNHRFHHFRDGSCSCKDYW 687



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 208/431 (48%), Gaps = 35/431 (8%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           ML EG+  +  +F  +L ++   + L +G  +H    +     D FV T LV  Y  CG 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
           + DAR +FD M  R +  W+ MI  Y  +    E   +F+ M+      D +    IL A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           C    NL +G+ V E I + +  LD  + + LITMYA C   + A  +F ++  KNL+  
Sbjct: 121 CVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITW 180

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           +A                               +I+ +A++ H  EAL+ F  MQ  G+ 
Sbjct: 181 SA-------------------------------IITAFADHGHCGEALRYFRMMQQEGIL 209

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC--GSLESAR 405
           P++VT +S+++       L++  RIHL I ++       ++NA++++Y +C  G L+ A 
Sbjct: 210 PNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAE 269

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
            + + M  + + +W  +IN + +HG +R AL  + +++ E+I  + VTFI VL AC+ + 
Sbjct: 270 VILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSST 329

Query: 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
            + EG+ I ++   E  +         + +++ +   +  A  + ++MP   + V W  +
Sbjct: 330 SLAEGKMIHSNAV-ECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIR-SAVSWNGM 387

Query: 526 MAACRVHGEIE 536
           + A   HGE E
Sbjct: 388 LQAYAQHGESE 398


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 257/715 (35%), Positives = 403/715 (56%), Gaps = 43/715 (6%)

Query: 12  TLPTSTAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY 68
           T     A+ +C   +  K   + HA ILK        N +L   +  +          + 
Sbjct: 112 TYTLVAALQACEDSSFKKLGMEIHAAILK-------SNQVLDVYVANALVAMHVRFGKMS 164

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           YA  IF ++    +   N  I   + +     AL+ F  + +  L  D  S   IL A  
Sbjct: 165 YAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASG 224

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           R   LL G ++H    K    S+  +   L+ MY  C  +  A L+FDKM  +D++ W+ 
Sbjct: 225 RLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTT 284

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I  Y QN    E L L  +++   ++ D M++   L ACS    LS+ + VH + +   
Sbjct: 285 VIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRG 344

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           ++ D  +Q+ +I +YA+CG               N+  +T M                F+
Sbjct: 345 LS-DLMMQNMIIDVYADCG---------------NINYATRM----------------FE 372

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
            +  KD++ W++MIS Y  N    EAL +F  M+   ++PD +T++S++SA A L  L++
Sbjct: 373 SIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNK 432

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            + IH +I +  F  +    N+++DMYA CGSLE+A +VF   R ++++ WT+MINA+ +
Sbjct: 433 GKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGM 492

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG  + A+  F+ M+D+ + P+ +TF+ +LYACSH+GL++EG+ +  +M  +Y + P  E
Sbjct: 493 HGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPE 552

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HY C+VDL GRAN L EA   V++M   P   +W + + ACR+H   +L E AA++LL L
Sbjct: 553 HYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDL 612

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           DPD  G+ VL+SN++A   RW+DV E+R  MK  G+ K   CS IE+ N+V+ FL  D+S
Sbjct: 613 DPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKS 672

Query: 609 HKQTDQIYEKLNEVISEL-KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS 667
           H ++ +IY+KL ++  +L K  GYVP     L ++  EEK +++  HSE+LA+ YGL+S+
Sbjct: 673 HPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLMST 732

Query: 668 KKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + + IRI KNLRVC DCH F KLVSK + RE+++RD +RFHH++DGVCSC D+W
Sbjct: 733 SEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/444 (30%), Positives = 219/444 (49%), Gaps = 39/444 (8%)

Query: 112 GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA 171
           G+  D F+FP +LKA    E +  G ++HGL  K G+ S  FV   LV MY  C  IL A
Sbjct: 5   GVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGA 64

Query: 172 RLMFDKMSYR-DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           R +FD+M+ R D+V W+ +I  Y  NG   E L LF EM+ + V  +   L   L AC  
Sbjct: 65  RKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACED 124

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
           +     G  +H  I+ +N  LD ++ + L+ M+                           
Sbjct: 125 SSFKKLGMEIHAAILKSNQVLDVYVANALVAMHV-------------------------- 158

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
                R G++  A  IFD++ EKD I W++MI+G+ +N    EAL+ F  +Q   +KPD+
Sbjct: 159 -----RFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDE 213

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           V+++S+++A   LG L   + IH Y  KN    +LR+ N +IDMY+KC  +  A  VF++
Sbjct: 214 VSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDK 273

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M  +++ISWT++I A+A +     AL    K++ + +D + +     L ACS    +   
Sbjct: 274 MINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHA 333

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
           +E+              ++   ++D++     +  A  + E++    +VV W S M +C 
Sbjct: 334 KEVHGYTLKRGLSDLMMQNM--IIDVYADCGNINYATRMFESIK-CKDVVSWTS-MISCY 389

Query: 531 VHGEI---ELAEFAAKQLLQLDPD 551
           VH  +    L  F   +   ++PD
Sbjct: 390 VHNGLANEALGVFYLMKETSVEPD 413



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 144/476 (30%), Positives = 244/476 (51%), Gaps = 36/476 (7%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I A S + +   AL +F +M   G+  + ++    L+A   +     GM++H    K
Sbjct: 81  NSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILK 140

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
                D +V   LV M+   GK+  A  +FD++  +D + W+ MI G+ QNGL++E L  
Sbjct: 141 SNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQF 200

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           F  ++ +N++PDE+ L  IL+A  R G L  G+ +H + + N +  +  + +TLI MY+ 
Sbjct: 201 FCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSK 260

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
           C C+  A  +FDK++ K                               DLI W+ +I+ Y
Sbjct: 261 CCCVAYAGLVFDKMINK-------------------------------DLISWTTVIAAY 289

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385
           A+NN   EALKL  ++Q  GM  D + + S + AC+ L  L  A+ +H Y  K     DL
Sbjct: 290 AQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGL-SDL 348

Query: 386 RVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDE 445
            + N IID+YA CG++  A  +FE ++ ++V+SWTSMI+ +  +G A  AL  F  MK+ 
Sbjct: 349 MMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKET 408

Query: 446 SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505
           S++P+ +T + +L A +    +++G+EI   +  +     +      +VD++     L  
Sbjct: 409 SVEPDSITLVSILSAAASLSALNKGKEIHGFIFRK-GFMLEGSTVNSLVDMYACCGSLEN 467

Query: 506 ALELVETMPFAPNVVIWGSLMAACRVHGEIELAE--FAAKQLLQLDPDHDGALVLL 559
           A + V     + ++V+W +++ A  +HG  + A   F+  +  +L PDH   L LL
Sbjct: 468 AYK-VFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALL 522



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 144/321 (44%), Gaps = 34/321 (10%)

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M++  V  D      +L AC    ++  G  +H  II         + ++L++MYA C  
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 269 MDMAKGLFDKVLLKNLVVS-TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
           +  A+ LFD++  +N VVS  +++S YS  GQ                            
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQC--------------------------- 93

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
                EAL LF EMQ  G+  +  T+++ + AC           IH  I K+    D+ V
Sbjct: 94  ----MEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYV 149

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
            NA++ M+ + G +  A  +F+ +  ++ I+W SMI  F  +G    AL FF  ++D ++
Sbjct: 150 ANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANL 209

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            P+ V+ I +L A    G +  G+EI A     + +         ++D++ +   +  A 
Sbjct: 210 KPDEVSLISILAASGRLGYLLNGKEIHAYAMKNW-LDSNLRIGNTLIDMYSKCCCVAYAG 268

Query: 508 ELVETMPFAPNVVIWGSLMAA 528
            + + M    +++ W +++AA
Sbjct: 269 LVFDKM-INKDLISWTTVIAA 288



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M+V G+  D  T   V+ AC  +  + +   IH  I K  +   + V N+++ MYAKC  
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 401 LESAREVFERMRRRN-VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           +  AR++F+RM  RN V+SW S+I+A++++G    AL  F +M+   +  N  T +  L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           AC  +     G EI A++     +   Y     +V +  R   +  A  + + +    N+
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVA-NALVAMHVRFGKMSYAARIFDELDEKDNI 179

Query: 520 VIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALVLLS 560
             W S++A    +G     L  F   Q   L PD    + +L+
Sbjct: 180 T-WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILA 221


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/656 (36%), Positives = 378/656 (57%), Gaps = 32/656 (4%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           ++ A  +F ++P       N  +   S +   + AL++   M  E L     +   +L A
Sbjct: 186 VHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPA 245

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
           ++    +  G ++HG   + GF S   + T LV MY  CG +  ARL+FD M  R++V W
Sbjct: 246 VSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSW 305

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + MID Y QN    E + +F++M    V+P ++ +   L AC+  G+L  G  +H+  ++
Sbjct: 306 NSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVE 365

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
             + LD                             +N+ V  +++S Y +  +V+ A  +
Sbjct: 366 --LELD-----------------------------RNVSVVNSLISMYCKCKEVDTAASM 394

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F ++  + ++ W+AMI G+A+N  P EAL  F++MQ   +KPD  T +SVI+A A L + 
Sbjct: 395 FGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSIT 454

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
             A+ IH  + +N    ++ V  A++DMYAKCG++  AR +F+ M  R+V +W +MI+ +
Sbjct: 455 HHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGY 514

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
             HG  + AL  F +M+  +I PNGVTF+ V+ ACSH+GLV+ G + F  M   Y+I P 
Sbjct: 515 GTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPS 574

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            +HYG MVDL GRA  L EA + +  MP  P V ++G+++ AC++H  +  AE  A++L 
Sbjct: 575 MDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLF 634

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           +L+P+  G  VLL+NIY     W+ VG++R SM  +G+ K   CS +E+ NEV+ F +  
Sbjct: 635 ELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGS 694

Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS 666
            +H  + +IY  L ++I ++K AGYVPD  + ++ LED+ K +++  HSEKLA+ +GL++
Sbjct: 695 TAHPSSKKIYAFLEKLICQIKEAGYVPDT-NLILGLEDDVKEQLLSSHSEKLAISFGLLN 753

Query: 667 SKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +   + I + KNLRVC DCHN  K +S V  REI++RD  RFHH+K+G CSC DYW
Sbjct: 754 TTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 160/601 (26%), Positives = 272/601 (45%), Gaps = 100/601 (16%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILK--LSHSHHSQNSLLLKLLLTSFSLPTTTP 64
           P      P +  +  CSSL  ++     I K  L   H  Q  L+   L   +       
Sbjct: 32  PANVYEHPAALLLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVS--LFCRYG------ 83

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
            S+  A  +F  I    + +    ++  +       ALK F++M ++ +    ++F  +L
Sbjct: 84  -SVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLL 142

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           K       L  G ++HGL  K GF  D F  TGL  MY  C ++ +AR +FD+M  RD+V
Sbjct: 143 KVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLV 202

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ ++ GY QNG+    L +   M   N++P  + +  +L A S    +  G+ +H + 
Sbjct: 203 SWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYA 262

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           +        ++ + L+ MYA CG +  A+ LFD +L +N+V   +M+  Y          
Sbjct: 263 MRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAY---------- 312

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                                 +N +P+EA+ +F +M   G+KP  V+++  + ACA LG
Sbjct: 313 ---------------------VQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLG 351

Query: 365 VLDQAQRIH-----LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
            L++ + IH     L +D+N     + V N++I MY KC  +++A  +F +++ R ++SW
Sbjct: 352 DLERGRFIHKLSVELELDRN-----VSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSW 406

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS------HA--------- 464
            +MI  FA +G    AL +F++M+  ++ P+  T++ V+ A +      HA         
Sbjct: 407 NAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMR 466

Query: 465 -----------GLVDE---------GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
                       LVD           R IF  M+  +        +  M+D +G   + +
Sbjct: 467 NCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERH-----VTTWNAMIDGYGTHGIGK 521

Query: 505 EALELVETM---PFAPNVVIWGSLMAACRVHGEIE--LAEF-AAKQLLQLDP--DHDGAL 556
            ALEL E M      PN V + S+++AC   G +E  L  F   K+   ++P  DH GA+
Sbjct: 522 AALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAM 581

Query: 557 V 557
           V
Sbjct: 582 V 582



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 197/409 (48%), Gaps = 51/409 (12%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
           SS    +S  SQIP             IS SHR       FL   N  +  + +  P  L
Sbjct: 2   SSQLVHVSTVSQIPP------------ISSSHRH------FLSQRNY-IPANVYEHPAAL 42

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
             + R   L E   +  L  K G   +   QT LV ++   G + +A  +F+ +  +  V
Sbjct: 43  -LLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNV 101

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            +  M+ G+ +    D+ L  F  M+   VEP     + +L  C     L  G+ +H  +
Sbjct: 102 LYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           + +  +LD    + L  MYA C                                QV +AR
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCR-------------------------------QVHEAR 190

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            +FD+M E+DL+ W+ +++GY++N   + AL++ N M    +KP  +T++SV+ A + L 
Sbjct: 191 KVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALR 250

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
           ++   + IH Y  +  F   + +  A++DMYAKCGSL++AR +F+ M  RNV+SW SMI+
Sbjct: 251 LIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMID 310

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           A+  + + + A++ F KM DE + P  V+ +G L+AC+  G ++ GR I
Sbjct: 311 AYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFI 359


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/622 (37%), Positives = 366/622 (58%), Gaps = 31/622 (4%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL+ F  M  EG+  +R +F  +L       GL E  ++H L T+ G      ++  LV 
Sbjct: 346 ALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVN 405

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           +YG C    DAR +FD++   +++ W+ MI  Y Q    D+ L LF  M+   ++PD + 
Sbjct: 406 VYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVN 465

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
              IL AC+   +    + VH+ + ++ +     +Q++L+ MYA                
Sbjct: 466 FMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYA---------------- 509

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                          +AG+++ A +I  +M E+ +  W+ +I+GYA +   +EAL+ + +
Sbjct: 510 ---------------KAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQK 554

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           +Q+  +  DKVT +SV++AC     L + + IH    +     D+ V NA+ +MY+KCGS
Sbjct: 555 LQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGS 614

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E+AR +F+ M  R+ +SW  M+ A+A HG++   L    KM+ E +  NG+TF+ VL +
Sbjct: 615 MENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSS 674

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSHAGL+ EG + F S+ ++  I  K EHYGC+VDL GRA  L+EA + +  MP  P +V
Sbjct: 675 CSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIV 734

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
            W SL+ ACRV  +++  + AA +LL+LDP +  A V+LSNIY++   W++  +LR++M 
Sbjct: 735 TWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMA 794

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
            R + K    S I++ N+V+EF   D SH +  +IY+K+ E+   ++ AGYVPD    L 
Sbjct: 795 SRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLH 854

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D+++E+K  ++ +HSEKLA+ +GLIS+ + S + I KNLRVCEDCH   K +SK+  REI
Sbjct: 855 DVDEEQKESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTATKFISKITGREI 914

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           V+RD  RFHH++DG CSCKDYW
Sbjct: 915 VVRDNHRFHHFRDGSCSCKDYW 936



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 144/498 (28%), Positives = 244/498 (48%), Gaps = 38/498 (7%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           SL  A++ F +I A      N  I A S     + AL +F  ML EG+  +  +   +L 
Sbjct: 7   SLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLN 66

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           +      L +G+ VH L  + GF  +  V T L+ MYG CG +LDA+ +F++M+ +++V 
Sbjct: 67  SCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVT 126

Query: 186 WSVMIDGY-FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
           W+ M+  Y  Q   +   + LF  M +  V+ + +    +L++      L  G+ +H  +
Sbjct: 127 WNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCV 186

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
            ++  +LD                               + V+TA+V+ Y++ G + DAR
Sbjct: 187 RESEHSLD-------------------------------VFVNTALVNTYTKCGSLTDAR 215

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            +FD M  + +  W++MIS Y+ +    EA  +F  MQ  G + D+VT LS++ AC +  
Sbjct: 216 KVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPE 275

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L   + +   I + +F  DL V  A+I MYA+C S E A +VF RM++ N+I+W+++I 
Sbjct: 276 TLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIIT 335

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
           AFA HG    AL +F  M+ E I PN VTFI +L   +    ++E   I   +T E+ + 
Sbjct: 336 AFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLIT-EHGLD 394

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA---ACRVHGEIELAEFA 541
                   +V+++GR     +A  + + +   PN++ W S++     C  H +  L  F 
Sbjct: 395 DTTTMRNALVNVYGRCESPDDARTVFDQLEL-PNLISWNSMIGIYVQCERHDD-ALQLFR 452

Query: 542 AKQLLQLDPDHDGALVLL 559
             Q   + PD    + +L
Sbjct: 453 TMQQQGIQPDRVNFMTIL 470



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/554 (26%), Positives = 249/554 (44%), Gaps = 53/554 (9%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHMKQ---THAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           L +   P  +     ++SC S   ++     HA  L+       QN+L+   LL  +   
Sbjct: 50  LLEGVAPNAITLVAVLNSCGSFRELRDGILVHALSLERGFF---QNTLVATALLNMYGKC 106

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAIS-----WSHRPKHALKVFLKMLNEGLTI 115
            T    L  A S+F ++        N  +   S     W    K A+++F +ML EG+  
Sbjct: 107 GT----LLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCW----KLAVELFTRMLLEGVKA 158

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           +  +F  +L ++   + L +G  +H    +     D FV T LV  Y  CG + DAR +F
Sbjct: 159 NVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVF 218

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           D M  R +  W+ MI  Y  +    E   +F+ M+      D +    IL AC     L 
Sbjct: 219 DGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQ 278

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
           +G+ V E I + +  LD                               L V TA+++ Y+
Sbjct: 279 HGKHVRESISETSFELD-------------------------------LFVGTALITMYA 307

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           R    EDA  +F +M + +LI WSA+I+ +A++ H  EAL+ F  MQ  G+ P++VT +S
Sbjct: 308 RCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFIS 367

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           +++       L++  RIHL I ++       + NA++++Y +C S + AR VF+++   N
Sbjct: 368 LLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPN 427

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           +ISW SMI  +       +AL  F  M+ + I P+ V F+ +L AC+  G     R++  
Sbjct: 428 LISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACT-IGSHGRTRKLVH 486

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
               E  +         +V+++ +A  L  A  +++ M     +  W  L+    +HG  
Sbjct: 487 QCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMD-EQQITAWNVLINGYALHGRS 545

Query: 536 ELAEFAAKQLLQLD 549
             A   A Q LQL+
Sbjct: 546 REA-LEAYQKLQLE 558



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 180/373 (48%), Gaps = 32/373 (8%)

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG + DA   F K+  R++V W+VMI  Y     F E L LF  M +  V P+ + 
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           L  +L++C     L  G  VH   ++     +  + + L+ MY  CG +  A+ +F+++ 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            KN+V   AM+  YS  G                  CW             + A++LF  
Sbjct: 121 EKNVVTWNAMLGVYSLQG-----------------CCW-------------KLAVELFTR 150

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M + G+K + +T L+V+++      L + + IH  + ++    D+ VN A+++ Y KCGS
Sbjct: 151 MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 210

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           L  AR+VF+ M  R+V +W SMI+A++I   +  A   F +M+ E    + VTF+ +L A
Sbjct: 211 LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDA 270

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           C +   +  G+ +  S++ E +          ++ ++ R     +A ++   M    N++
Sbjct: 271 CVNPETLQHGKHVRESIS-ETSFELDLFVGTALITMYARCRSPEDAAQVFGRMK-QTNLI 328

Query: 521 IWGSLMAACRVHG 533
            W +++ A   HG
Sbjct: 329 TWSAIITAFADHG 341



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 175/382 (45%), Gaps = 35/382 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++F Q+  P     N  I       R   AL++F  M  +G+  DR +F  IL A   
Sbjct: 416 ARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTI 475

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
                    VH    + G G  P VQT LV MY   G++  A ++  +M  + I  W+V+
Sbjct: 476 GSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVL 535

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I+GY  +G   E L  ++++++  +  D++    +L+AC+ + +L+ G+ +H   ++  +
Sbjct: 536 INGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGL 595

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             D  +++ L  MY+ CG M+ A+ +FD + +++ V    M+  Y++ G+ E        
Sbjct: 596 DSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESE-------- 647

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                                  E LKL  +M+  G+K + +T +SV+S+C+H G++ + 
Sbjct: 648 -----------------------EVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEG 684

Query: 370 -QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFA 427
            Q  H                 ++D+  + G L+ A +   +M     +++W S++ A  
Sbjct: 685 CQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACR 744

Query: 428 IHGDARNALIFFNKMKDESIDP 449
           +  D     +   K+ +  +DP
Sbjct: 745 VQKDLDRGKLAAGKLLE--LDP 764


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/570 (42%), Positives = 350/570 (61%), Gaps = 36/570 (6%)

Query: 153 FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS 212
           F+   L+ MY   G + DA+ +FDKM  R++V W+ MI  Y    L D+ L     M   
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 213 NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
            V P+    S +L AC    NL     +H  II   + LD+                   
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNL---RQLHCCII--KIGLDS------------------- 96

Query: 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
                     ++ V +A++  YSR G++E+A  +FD+MV  DL+ WS++I+G+A+N+   
Sbjct: 97  ----------DVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGD 146

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
           EAL+LF  M+  G    + T+ SV+ AC  L +L+  +++H+++ K  +  DL +NNA++
Sbjct: 147 EALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALL 204

Query: 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
           DMY KCGSLE A  VF RM  ++VISW++MI   A +G ++ AL  F  MK   I PN V
Sbjct: 205 DMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYV 264

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
           T +GVL+ACSHAGLV+EG   F SM   + I P  EHYGCM+DL GRA  L EA++L+  
Sbjct: 265 TIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINE 324

Query: 513 MPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572
           M   P+ V W +L+ ACRVH  +++A  AAKQ+L+LDP   G  VLLSNIYA  +RW DV
Sbjct: 325 MECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDV 384

Query: 573 GELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYV 632
            E+R++M  RGI KE  CS IE++ +++ F+  DRSH Q  +I  +LN++I +L   GYV
Sbjct: 385 AEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSHPQIREINIQLNQLIYKLMGVGYV 444

Query: 633 PDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLV 692
           PD +  L DLE E+ ++ + +HSEKLA+ +GL+S  +   IRI KNLR+C DCH F KL+
Sbjct: 445 PDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKLL 504

Query: 693 SKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +K+  R IVIRD  R+HH++DG+CSC D+W
Sbjct: 505 AKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 182/366 (49%), Gaps = 40/366 (10%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L+ A  +F ++P          I A S +     AL+  + ML EG+  + F++  +L+A
Sbjct: 16  LHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRA 75

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
               +GL    Q+H    K+G  SD FV++ L+ +Y   G++ +A  +FD+M   D+V W
Sbjct: 76  ---CDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVW 132

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           S +I G+ QN   DE L LF+ MK +     +  L+ +L AC+    L  G  VH  ++ 
Sbjct: 133 SSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLK 192

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
            +   D  L + L+ MY  CG ++ A  +F +++ K+++  + M++G             
Sbjct: 193 YDQ--DLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAG------------- 237

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
                              A+N + +EALKLF  M+V G+KP+ VT++ V+ AC+H G++
Sbjct: 238 ------------------LAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLV 279

Query: 367 DQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMI 423
           ++    + +  K  FG D    +   +ID+  + G L  A ++   M    + ++W +++
Sbjct: 280 EEGL-YYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALL 338

Query: 424 NAFAIH 429
           NA  +H
Sbjct: 339 NACRVH 344



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 9/234 (3%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTT 63
           L +  +P     S+ + +C  L +++Q H  I+K+       +  +   L+  +S     
Sbjct: 58  LREGVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIG---LDSDVFVRSALIDVYS----R 110

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
              L  AL +F ++      V +  I   + +     AL++F +M   G    + +   +
Sbjct: 111 WGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSV 170

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L+A      L  G QVH     L +  D  +   L+ MY  CG + DA  +F +M  +D+
Sbjct: 171 LRACTGLALLELGRQVH--VHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDV 228

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           + WS MI G  QNG   E L LFE MK+  ++P+ + +  +L ACS AG +  G
Sbjct: 229 ISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEG 282


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/590 (40%), Positives = 346/590 (58%), Gaps = 31/590 (5%)

Query: 133  LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
            L +  QVH   +  G   +  V   LV  Y     + DA  +FD M  RD V WSVM+ G
Sbjct: 751  LTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 810

Query: 193  YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
            + + G +      F E+      PD   L  ++ AC    NL  G  +H  +    + LD
Sbjct: 811  FAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLD 870

Query: 253  AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
              + + L+ MY  C                                ++EDAR +FD+M E
Sbjct: 871  HFVCAALVDMYGKCR-------------------------------EIEDARFLFDKMXE 899

Query: 313  KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
            +DL+ W+ MI GYAE  +  E+L LF++M+  G+ PDKV M++V+ ACA LG + +A+ I
Sbjct: 900  RDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTI 959

Query: 373  HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
              YI +  F  D+ +  A+IDM+AKCG +ESARE+F+RM  +NVISW++MI A+  HG  
Sbjct: 960  DDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQG 1019

Query: 433  RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
            R AL  F  M    I PN +T + +LYACSHAGLV+EG   F+ M  +Y++    +HY C
Sbjct: 1020 RKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTC 1079

Query: 493  MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
            +VDL GRA  L EAL+L+ +M    +  +WG+ + ACR H ++ LAE AA  LL+L P +
Sbjct: 1080 VVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQN 1139

Query: 553  DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
             G  +LLSNIYA   RW+DV ++R  M +R + K    + IE++N+ ++F   D +H ++
Sbjct: 1140 PGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRS 1199

Query: 613  DQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSC 672
             +IYE L  + ++L+  GYVPD +  L D+++E K  ++  HSEKLA+ +GLI++ + + 
Sbjct: 1200 KEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTP 1259

Query: 673  IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            IRI+KNLRVC DCH F KLVS +  R I++RD  RFHH+K+G CSC DYW
Sbjct: 1260 IRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/608 (36%), Positives = 337/608 (55%), Gaps = 42/608 (6%)

Query: 75  SQIPAPPSRVSNKFIR-AISWSHRPKHALKV-FLKMLNEGLTIDRFSFPPILKAIARAEG 132
           S IP   S +  +F + +++  +R + + K  FL+ LN    I          A+     
Sbjct: 24  SVIPIVESXIETQFRQTSLNLHNREEESSKFHFLQRLNPKFYIS---------ALVNCRN 74

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L +  QVH   +  G   +  V   L+  Y     + DA  +FD M  RD V WSVM+ G
Sbjct: 75  LTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 134

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           + + G +      F E+      PD   L  ++ AC    NL  G  +H  +    + LD
Sbjct: 135 FAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLD 194

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             + + L+ MY  C                                ++EDAR +FD+M E
Sbjct: 195 HFVCAALVDMYVKCR-------------------------------EIEDARFLFDKMQE 223

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           +DL+ W+ MI GYAE     E+L LF +M+  G+ PDKV M++V+ ACA LG + +A+ I
Sbjct: 224 RDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARII 283

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
             YI +  F  D+ +  A+IDMYAKCG +ESARE+F+RM  +NVISW++MI A+  HG  
Sbjct: 284 DDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQG 343

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
           R AL  F  M    + P+ +T   +LYACSHAGLV+EG   F+SM  +Y++    +HY C
Sbjct: 344 RKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTC 403

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           +VDL GRA  L EAL+L+++M    +  +WG+ + ACR H ++ LAE AA  LL+L   +
Sbjct: 404 VVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQN 463

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
            G  VLLSNIYA   RW+DV ++R  M +R + K    + IE++N+ ++F   D +H ++
Sbjct: 464 PGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRS 523

Query: 613 DQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSC 672
            +IYE L  + ++L+  GYVPD +  L D+++E K  ++  HSEKLA+ +GLI++ + + 
Sbjct: 524 KEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTP 583

Query: 673 IRIVKNLR 680
           IRI+KNLR
Sbjct: 584 IRIIKNLR 591



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 203/427 (47%), Gaps = 60/427 (14%)

Query: 17  TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
           +A+ +C +LT ++Q HAQ         S + +L  +++ +          L Y  S +  
Sbjct: 67  SALVNCRNLTQVRQVHAQA--------SVHGMLENIVVAN---------KLIYFYSYYRA 109

Query: 77  IPAPPSRVSNKFIR-AISWSHRPKHALKV---------FLKMLNEGLTIDRFSFPPILKA 126
           +           +R ++SWS       KV         F +++  G   D ++ P +++A
Sbjct: 110 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA 169

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
               + L  G  +H +  K G   D FV   LV MY  C +I DAR +FDKM  RD+V W
Sbjct: 170 CRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTW 229

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           +VMI GY + G  +E L LFE+M+   V PD++ +  ++ AC++ G +     + ++I  
Sbjct: 230 TVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQR 289

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
               LD  L + +I MYA CGC++ A+ +FD++  KN++  +AM++ Y   GQ       
Sbjct: 290 KKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ------- 342

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
                                    ++AL LF  M   GM PDK+T+ S++ AC+H G++
Sbjct: 343 ------------------------GRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLV 378

Query: 367 DQAQRIHLYI-DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMIN 424
           ++  R    + +  +   D++    ++D+  + G L+ A ++ + M   ++   W + + 
Sbjct: 379 EEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLG 438

Query: 425 AFAIHGD 431
           A   H D
Sbjct: 439 ACRTHKD 445



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 168/329 (51%), Gaps = 33/329 (10%)

Query: 105  FLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA 164
            F +++  G   D ++ P +++A    + L  G  +H +  K G   D FV   LV MYG 
Sbjct: 824  FRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGK 883

Query: 165  CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
            C +I DAR +FDKM  RD+V W+VMI GY + G  +E L LF++M+   V PD++ +  +
Sbjct: 884  CREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTV 943

Query: 225  LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
            + AC++ G +     + ++I      LD  L + +I M+A CGC++ A+ +FD++  KN+
Sbjct: 944  VFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNV 1003

Query: 285  VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
            +  +AM++ Y   GQ                                ++AL LF  M   
Sbjct: 1004 ISWSAMIAAYGYHGQ-------------------------------GRKALDLFPMMLRS 1032

Query: 345  GMKPDKVTMLSVISACAHLGVLDQAQRIHLYI-DKNAFGGDLRVNNAIIDMYAKCGSLES 403
            G+ P+K+T++S++ AC+H G++++  R    + +  +   D++    ++D+  + G L+ 
Sbjct: 1033 GILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDE 1092

Query: 404  AREVFERM-RRRNVISWTSMINAFAIHGD 431
            A ++   M   ++   W + + A   H D
Sbjct: 1093 ALKLIXSMTXEKDEGLWGAFLGACRTHKD 1121



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 85/173 (49%), Gaps = 1/173 (0%)

Query: 101  ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
            +L +F KM  EG+  D+ +   ++ A A+   + +   +     +  F  D  + T ++ 
Sbjct: 921  SLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMID 980

Query: 161  MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
            M+  CG +  AR +FD+M  ++++ WS MI  Y  +G   + L+LF  M  S + P+++ 
Sbjct: 981  MHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKIT 1040

Query: 221  LSKILSACSRAGNLSYGEAVHEFII-DNNVALDAHLQSTLITMYANCGCMDMA 272
            L  +L ACS AG +  G      +  D +V  D    + ++ +    G +D A
Sbjct: 1041 LVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEA 1093


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/717 (35%), Positives = 391/717 (54%), Gaps = 41/717 (5%)

Query: 9   KPLTLPTSTAISSCSSL---THMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +P     S+ I+ C+ L      ++ H  ++KL +   + ++  L  +     +      
Sbjct: 108 RPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGI------ 161

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
            L  A S+F +I  P     N  I           AL++  +M   G+  + F+    LK
Sbjct: 162 -LEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALK 220

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A A       G Q+H    K+  GSD F+  GL+ MY  C  + DARL+F  M  RD++ 
Sbjct: 221 ACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIA 280

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ +I G+ QN   +E  +LF  M    +  ++  LS +L + +          +H   +
Sbjct: 281 WNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSL 340

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
            +    D ++ ++LI  Y  CG                                VEDA  
Sbjct: 341 KSGFEFDNYVVNSLIDTYGKCG-------------------------------HVEDATR 369

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +F++    DL+ ++++++ YA++   +EAL+L+ EMQ  G+KPD     S+++ACA L  
Sbjct: 370 VFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSA 429

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
            +Q +++H++I K  F  D+   N++++MYAKCGS+E A   F R+  R ++SW++MI  
Sbjct: 430 YEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGG 489

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
            A HG  + AL  F +M    + PN +T + VL AC+HAGLV E +  F SM   + I P
Sbjct: 490 LAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEP 549

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
             EHY CM+DL GRA  L  A+ELV  MPF  N ++WG+L+ A R+H  I+L E AA+ L
Sbjct: 550 MQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEML 609

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
           L L+P+  G  VLL+NIYA    W  V  +R+ MK+  + KE   S +E+ ++VY F+  
Sbjct: 610 LALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVG 669

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           DRSH ++ +IY KL+E+   LK AGYVP +   L D+E  EK +++  HSEKLA+ +GLI
Sbjct: 670 DRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLI 729

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           ++   + IR+ KNLR+C DCH  +K +SK+ +REI++RD  RFHH+++G CSC +YW
Sbjct: 730 ATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/485 (27%), Positives = 222/485 (45%), Gaps = 35/485 (7%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A S+F  IP       N        S     A+ +F  M+  G+  + FS   ++     
Sbjct: 64  ARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTG 123

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            E  ++G ++HG   KLG+ SD F    LV MY   G + DA  +FD+++  DIV W+ +
Sbjct: 124 LEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAI 183

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G   +      L L  EM  S + P+   LS  L AC+       G  +H  +I  ++
Sbjct: 184 IAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDM 243

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             D+ L   LI MY+ C  MD                               DARL+F  
Sbjct: 244 GSDSFLGVGLIDMYSKCNSMD-------------------------------DARLVFKL 272

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M E+D+I W+A+ISG+++N   +EA  LF  M   G+  ++ T+ +V+ + A L      
Sbjct: 273 MPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMC 332

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           ++IH    K+ F  D  V N++ID Y KCG +E A  VFE     +++ +TS++ A+A  
Sbjct: 333 RQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQD 392

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G    AL  + +M+D  I P+      +L AC+     ++G+++   +  ++        
Sbjct: 393 GQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHIL-KFGFMSDIFA 451

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
              +V+++ +   + +A      +P    +V W +++     HG  + A    KQ+L++ 
Sbjct: 452 GNSLVNMYAKCGSIEDASCAFSRIP-VRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVG 510

Query: 550 --PDH 552
             P+H
Sbjct: 511 VPPNH 515



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 213/430 (49%), Gaps = 39/430 (9%)

Query: 112 GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA 171
           G+  + F+FP +LKA    + L+ G QVHG+    GF SD FV   LV +Y  CG   DA
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
           R +FD +  R +V W+ +   Y  + +  E ++LF +M +S + P+E  LS +++ C+  
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
            +   G  +H ++I      DA   + L+ MYA  G ++ A  +FD++            
Sbjct: 125 EDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEI------------ 172

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
                               + D++ W+A+I+G   + +   AL+L  EM   GM P+  
Sbjct: 173 -------------------AKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMF 213

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           T+ S + ACA + + +  +++H  + K   G D  +   +IDMY+KC S++ AR VF+ M
Sbjct: 214 TLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLM 273

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471
             R++I+W ++I+  + + +   A   F  M  E I  N  T   VL + +        R
Sbjct: 274 PERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCR 333

Query: 472 EIFA-SMTNEYNIPPKYEHY--GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           +I A S+ + +    ++++Y    ++D +G+   + +A  + E  P   ++V++ SL+ A
Sbjct: 334 QIHALSLKSGF----EFDNYVVNSLIDTYGKCGHVEDATRVFEESPIV-DLVLFTSLVTA 388

Query: 529 CRVHGEIELA 538
               G+ E A
Sbjct: 389 YAQDGQGEEA 398



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 163/334 (48%), Gaps = 36/334 (10%)

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M +  ++ +E     +L AC+   +L  G+ VH  ++      D  + ++L+ +YA CG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCG- 59

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
                                   G+       DAR +FD + ++ ++ W+A+ S Y  +
Sbjct: 60  ------------------------GFG------DARSLFDAIPDRSVVSWNALFSCYVHS 89

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
           +   EA+ LF++M + G++P++ ++ S+I+ C  L    Q ++IH Y+ K  +  D    
Sbjct: 90  DMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSA 149

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           NA++DMYAK G LE A  VF+ + + +++SW ++I    +H     AL    +M    + 
Sbjct: 150 NALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMC 209

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
           PN  T    L AC+   L + GR++ +S+         +   G ++D++ + N + +A  
Sbjct: 210 PNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVG-LIDMYSKCNSMDDARL 268

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           + + MP   +++ W ++++    H + E  E AA
Sbjct: 269 VFKLMP-ERDMIAWNAVISG---HSQNEEDEEAA 298


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/588 (39%), Positives = 354/588 (60%), Gaps = 4/588 (0%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD---ARLMFDKMSYRDIVPWSVMIDGYF 194
           Q H    +LG  +D     G V  + A  K  D   A  +FDK+ + D   ++ +  GY 
Sbjct: 38  QYHSQIIRLGLSADNDA-MGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYL 96

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           +  L    + ++  M   +V P++     ++ AC     +  G+ +H  ++      D  
Sbjct: 97  RWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGF 156

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
             + LI MY N   ++ A+ +FD +  +++V  T++++GYS+ G V+ AR +F+ M E++
Sbjct: 157 SLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERN 216

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
            + W+AMI+ Y ++N   EA  LF+ M++  +  DK    S++SAC  LG L+Q + IH 
Sbjct: 217 SVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHG 276

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           YI+K+    D ++   +IDMY KCG LE A EVF  + ++ + SW  MI   A+HG    
Sbjct: 277 YIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEA 336

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           A+  F +M+ E + P+G+TF+ VL AC+H+GLV+EG+  F  MT    + P  EH+GCMV
Sbjct: 337 AIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMV 396

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DL GRA LL EA +L+  MP  P+  + G+L+ ACR+HG  EL E   K++++L+P + G
Sbjct: 397 DLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSG 456

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
             VLL+N+YA   RW+DV ++RK M +RG+ K    S IE  + V EF+   R+H Q  +
Sbjct: 457 RYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKE 516

Query: 615 IYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIR 674
           IY KL+E++  ++  GYVPD    L D+++EEK   + +HSEKLA+ +GL+ +K    +R
Sbjct: 517 IYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLR 576

Query: 675 IVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           I KNLR+C DCH   KL+SKVY REI+IRDR RFHH++ G CSCKDYW
Sbjct: 577 ISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 211/447 (47%), Gaps = 69/447 (15%)

Query: 18  AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI 77
            + SCS++  +KQ H+QI++L  S  + N  + +++        +    L YAL +F +I
Sbjct: 26  GLDSCSTMAELKQYHSQIIRLGLS--ADNDAMGRVIKFC---AISKSGDLNYALEVFDKI 80

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
           P P + + N   R        ++ + ++ +ML++ ++ ++F++PP+++A      + EG 
Sbjct: 81  PHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGK 140

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           Q+H    K GFG+D F    L+ MY     +  AR +FD M  RD+V W+ +I GY Q G
Sbjct: 141 QIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWG 200

Query: 198 LFD-------------------------------EVLNLFEEMKMSNVEPDEMVLSKILS 226
             D                               E   LF+ M++ NV  D+ V + +LS
Sbjct: 201 FVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLS 260

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV 286
           AC+  G L  G+ +H +I  + + LD+ L +T+I MY  CGC++ A  +F+++  K +  
Sbjct: 261 ACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISS 320

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346
              M+ G +  G+ E                                A++LF EM+   +
Sbjct: 321 WNCMIGGLAMHGKGE-------------------------------AAIELFKEMEREMV 349

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIIDMYAKCGSLESAR 405
            PD +T ++V+SACAH G++++ +    Y+ +       +     ++D+  + G LE AR
Sbjct: 350 APDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEAR 409

Query: 406 EVFERMR-RRNVISWTSMINAFAIHGD 431
           ++   M    +     +++ A  IHG+
Sbjct: 410 KLINEMPVNPDAGVLGALVGACRIHGN 436


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/654 (37%), Positives = 372/654 (56%), Gaps = 33/654 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPILKAIA 128
           A  +F ++PA      N  +   + +   + A+ + ++M  E G   D  +   +L A A
Sbjct: 279 ARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACA 338

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
            A+ L    +VH    + GF     V T ++ +Y  CG +  AR +FD M  R+ V W+ 
Sbjct: 339 DAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNA 398

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI GY +NG   E L LF+ M    V+  ++ +   L AC   G L  G  VHE ++   
Sbjct: 399 MIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIG 458

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           +  + ++ + LITMY  C   D+A                                 +FD
Sbjct: 459 LESNVNVMNALITMYCKCKRTDLAAQ-------------------------------VFD 487

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           ++  K  + W+AMI G  +N   ++A++LF+ MQ+  +KPD  T++S+I A A +    Q
Sbjct: 488 ELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQ 547

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
           A+ IH Y  +     D+ V  A+IDMYAKCG +  AR +F   R R+VI+W +MI+ +  
Sbjct: 548 ARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGS 607

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG  + A+  F +MK     PN  TF+ VL ACSHAGLVDEG+E F+SM  +Y + P  E
Sbjct: 608 HGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGME 667

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HYG MVDL GRA  L EA   ++ MP  P + ++G+++ AC++H  +ELAE +A+++ +L
Sbjct: 668 HYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFEL 727

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           +P+     VLL+NIYA    W+DV  +R +M+++G+ K    S +++ NE++ F +   +
Sbjct: 728 EPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTN 787

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
           H+Q   IY +L ++I E+K  GYVPD  S + D+ED+ K +++  HSEKLA+ YGLI + 
Sbjct: 788 HQQAKDIYARLAKLIEEIKAVGYVPDTDS-IHDVEDDVKAQLLNTHSEKLAIAYGLIRTA 846

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             + I+I KNLRVC+DCHN  KL+S V  REI++RD  RFHH+KDG CSC DYW
Sbjct: 847 PGTTIQIKKNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 2/158 (1%)

Query: 320 AMISGYAENNHPQEALKLFNEMQ-VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           A +   A  +  + AL  F  M    G  P   T  S++  CA    L   + +H  +  
Sbjct: 194 ARLRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAA 253

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
                +     A+ +MYAKC     AR VF+RM  R+ ++W +++  +A +G A  A+  
Sbjct: 254 RGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGM 313

Query: 439 FNKMKDESID-PNGVTFIGVLYACSHAGLVDEGREIFA 475
             +M++E  + P+ VT + VL AC+ A  +   RE+ A
Sbjct: 314 VVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHA 351


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/677 (35%), Positives = 377/677 (55%), Gaps = 47/677 (6%)

Query: 46  NSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVF 105
           +SLL      S SL   +P+  + +        AP    +   ++AI     P HA    
Sbjct: 19  SSLLKPTFFASLSLQYQSPNPSFTS-------SAPQFDNNQTHLKAIPSCSNP-HAESTC 70

Query: 106 LKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC 165
           L       T    ++  +L++    + +  G Q+H      GFG D  + T LV +Y  C
Sbjct: 71  L-------TPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVC 123

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
             +  ARL+FD++   +I  W+V+I GY  NG ++  + L+ +M    + PD      +L
Sbjct: 124 DSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVL 183

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
            AC+    + +G  +HE ++                                    K++ 
Sbjct: 184 KACAALSAIEHGREIHEHVVQTGWE-------------------------------KDVF 212

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
           V  A++  Y++ G V  AR +FD+++ +D + W++M++ Y++N HP   L L +EM + G
Sbjct: 213 VGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTG 272

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
           ++P + T+++ ISA A    L Q + +H    +  F    +V  A++DMYAKCGS+  AR
Sbjct: 273 LRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVAR 332

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
            +FER+  + V+SW +MI  +A+HG A  AL  F +M +    P+ +TF+GVL ACSH G
Sbjct: 333 NLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM-NRVAKPDHITFVGVLSACSHGG 391

Query: 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
           L++EG   F +M  +Y I P  +HY CMVDL G +  L EA  L+  M   P+  +WG+L
Sbjct: 392 LLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGAL 451

Query: 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585
           + +C++H  +EL E A ++L++L+PD  G  V+LSNIYA+  +W+ V +LRK M +R + 
Sbjct: 452 LNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLK 511

Query: 586 KERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDE 645
           K  ACS IE+ N+V+ FL+ D SH  +D+IY +L  V   +K AGY P   S   D+ED+
Sbjct: 512 KSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDD 571

Query: 646 EKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDR 705
           EK  ++  HSE+LA+ +GLIS+   + + I KNLR+CEDCH  IK +SK+  REI +RD 
Sbjct: 572 EKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDV 631

Query: 706 TRFHHYKDGVCSCKDYW 722
            R+HH+KDGVCSC DYW
Sbjct: 632 NRYHHFKDGVCSCGDYW 648


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/625 (39%), Positives = 371/625 (59%), Gaps = 41/625 (6%)

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAIA--RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
            ++F KM   G+     +F  ++K+ A  R   L++ MQ   L  K GF +D  V T L+
Sbjct: 280 FEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKAL--KSGFTTDQIVITALM 337

Query: 160 GMYGACGKILDARLMFDKMSY-RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
                C ++ DA  +F  M   +++V W+ MI G  QNG  D+ +NLF +M+   V+P+ 
Sbjct: 338 VALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNH 397

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
              S IL+         +   +H  +I  N                              
Sbjct: 398 FTYSAILTVHYPV----FVSEMHAEVIKTNYE---------------------------- 425

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
              ++  V TA++  Y + G   DA  +F+ +  KDL+ WSAM++GYA+    +EA KLF
Sbjct: 426 ---RSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLF 482

Query: 339 NEMQVCGMKPDKVTMLSVISACAH-LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           +++   G+KP++ T  SVI+ACA      +Q ++ H Y  K      L V++A++ MYAK
Sbjct: 483 HQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAK 542

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
            G+++SA EVF+R + R+++SW SMI+ ++ HG A+ AL  F++M+  ++D + VTFIGV
Sbjct: 543 RGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGV 602

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           + AC+HAGLV++G++ F SM N+++I P  +HY CM+DL+ RA +L +A+ ++  MPF P
Sbjct: 603 ITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPP 662

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
              +W +L+ A RVH  +EL E AA++L+ L P+   A VLLSN+YA    WQ+   +RK
Sbjct: 663 GATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRK 722

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            M +R + KE   S IE+ N+ Y FL  D +H  ++QIY KL+E+   LK AGY PD  +
Sbjct: 723 LMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGYQPDTKN 782

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
              D+EDE+K  ++  HSE+LA+ +GLI++  +  I+IVKNLRVC DCHNF KLVS V  
Sbjct: 783 VFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIVKNLRVCGDCHNFTKLVSLVEQ 842

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           R IV+RD  RFHH+KDG+CSC DYW
Sbjct: 843 RYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 228/487 (46%), Gaps = 48/487 (9%)

Query: 68  YYALSIFSQIPAPPSRVS--NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           + A ++F +IP  P+ +   N+ + + S   + K AL +F+ +L+  L  D  +   +  
Sbjct: 42  HIAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFN 101

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
             A +     G QVH    K G      V T LV MY     + D R +FD+M  R++V 
Sbjct: 102 ICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVS 161

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ ++ GY  NGL+  V  LF +M+   V P+   +S +++A    G +  G  VH  ++
Sbjct: 162 WTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVV 221

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
            +       + ++LI++Y+  G +  A+ +FDK+ +++ V   +M++GY R GQ      
Sbjct: 222 KHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQ------ 275

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
                   DL                 E  ++FN+MQ+ G+KP  +T  SVI +CA L  
Sbjct: 276 --------DL-----------------EVFEIFNKMQLAGVKPTHMTFASVIKSCASLRE 310

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-RNVISWTSMIN 424
           L   + +     K+ F  D  V  A++   +KC  ++ A  +F  M   +NV+SWT+MI+
Sbjct: 311 LALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMIS 370

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
               +G    A+  F++M+ E + PN  T+  +L              +F S  +   I 
Sbjct: 371 GCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTV---------HYPVFVSEMHAEVIK 421

Query: 485 PKYEHYG----CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
             YE        ++D + +     +A+++ E +  A +++ W +++A     GE E A  
Sbjct: 422 TNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIE-AKDLMAWSAMLAGYAQTGETEEAAK 480

Query: 541 AAKQLLQ 547
              QL++
Sbjct: 481 LFHQLIK 487



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 190/425 (44%), Gaps = 43/425 (10%)

Query: 9   KPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY 68
           KP  +  ++ I SC+SL  +        K   S  + + +++  L+ + S        + 
Sbjct: 292 KPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALS----KCKEMD 347

Query: 69  YALSIFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
            ALS+FS +    + VS    I     +     A+ +F +M  EG+  + F++  IL   
Sbjct: 348 DALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT-- 405

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
                 +   ++H    K  +     V T L+  Y   G  +DA  +F+ +  +D++ WS
Sbjct: 406 --VHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWS 463

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC-SRAGNLSYGEAVHEFIID 246
            M+ GY Q G  +E   LF ++    ++P+E   S +++AC S       G+  H + I 
Sbjct: 464 AMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIK 523

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
             +     + S L+TMYA  G +D A  +F +   ++LV   +M+SGYS+ GQ + A   
Sbjct: 524 MRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKA--- 580

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
                                       L++F+EMQ   M  D VT + VI+AC H G++
Sbjct: 581 ----------------------------LEVFDEMQKRNMDVDAVTFIGVITACTHAGLV 612

Query: 367 DQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMIN 424
           ++ Q+  +  I+ +     ++  + +ID+Y++ G LE A  +   M        W +++ 
Sbjct: 613 EKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLG 672

Query: 425 AFAIH 429
           A  +H
Sbjct: 673 AARVH 677


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/654 (36%), Positives = 379/654 (57%), Gaps = 8/654 (1%)

Query: 68  YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
           Y AL IF+++P       N  I   S        L +F++M N+G + +  ++  +L A 
Sbjct: 229 YKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSAC 288

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
           A    L  G  +H    ++    D     GL+ MY  CG +  A+ +F  +   D + W+
Sbjct: 289 ASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWN 348

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
            +I G    GL ++ L LF +M+ S+V  DE +L  IL  CS     S GE +H + I +
Sbjct: 349 SLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKS 408

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
            +   A + + +ITMYA CG  D A  +F  + L+N +  TAM++ +SR+G +  AR  F
Sbjct: 409 GMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYF 468

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
           D M E++++ W++M+S Y +N   +E LKL+  M+  G++PD +T  + I ACA L ++ 
Sbjct: 469 DMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVK 528

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
              ++  +  K     ++ V N+I+ MY++CG ++ A+  F+ +  +++ISW +M+ AFA
Sbjct: 529 LGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFA 588

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            +G     +  F  M      PN ++++ VL  CSH GLV EG+  F SMT  + I P  
Sbjct: 589 QNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTN 648

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
           EH+ CMVDL GRA LL +A +L+E MPF PN  +W +L+ +CRVH ++ LAE AAK+L++
Sbjct: 649 EHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLME 708

Query: 548 LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
           LD +     VLLSN+Y++     +V ++RK MK +GI   R CS IE++N V+ F   + 
Sbjct: 709 LDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDET 768

Query: 608 SHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS 667
           SH Q  ++Y KL E++  ++  G    + S++       K+    +HSEKLA  +GL++ 
Sbjct: 769 SHPQIKEVYLKLEEMMKMIEDTGKYITVESSV----HRSKK----YHSEKLAFAFGLLNL 820

Query: 668 KKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
                I ++KNLRVC+DCH  IKL+S V +RE+++RD  RFHH+KDG+CSCKDY
Sbjct: 821 PSWMPIHVMKNLRVCDDCHLVIKLLSLVTSRELIMRDGYRFHHFKDGICSCKDY 874



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 178/379 (46%), Gaps = 8/379 (2%)

Query: 167 KILDARLMFDKMSYR--DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP----DEMV 220
           ++ DA  +FD+M  R  D V W+ MI GY QNG        F  M     +     D   
Sbjct: 89  RMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFS 148

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
            + ++ AC   G+      +H  +      ++  +Q++++ MY  CG +D+A+ +F  + 
Sbjct: 149 FTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIE 208

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
             +L    +M+ GYS+      A  IF++M E+D + W+ +IS ++++    + L +F E
Sbjct: 209 RPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVE 268

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M   G  P+ +T  SV+SACA    L     +H  I +     DL   N +IDMYAKCG 
Sbjct: 269 MCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGC 328

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           L+ A+ VF+ +R  + ISW S+I      G   +ALI FN+M+  S+  +      +L  
Sbjct: 329 LDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGV 388

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CS       G E+    T +  +         ++ ++ +     +A  +   MP   N +
Sbjct: 389 CSGPDYASTG-ELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLR-NTI 446

Query: 521 IWGSLMAACRVHGEIELAE 539
            W +++ A    G+I  A 
Sbjct: 447 SWTAMITAFSRSGDIGKAR 465



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/470 (23%), Positives = 197/470 (41%), Gaps = 80/470 (17%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           +Q   P  +   + +S+C+S + +K     HA+IL++ HS        L L+  +  +  
Sbjct: 271 NQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHS--------LDLVFGNGLIDM 322

Query: 62  TTP-SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
                 L  A  +F  +        N  I  +      + AL +F +M    + +D F  
Sbjct: 323 YAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFIL 382

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC--------------- 165
           P IL   +  +    G  +HG   K G GS   V   ++ MY  C               
Sbjct: 383 PTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPL 442

Query: 166 ----------------GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
                           G I  AR  FD M  R+IV W+ M+  Y QNG  +E L L+  M
Sbjct: 443 RNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSM 502

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
           + + V+PD +  +  + AC+    +  G  V        ++L+  + ++++TMY+ CG +
Sbjct: 503 RSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLI 562

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
             AK  FD +  K+L                               I W+AM++ +A+N 
Sbjct: 563 KEAKNTFDSIDDKDL-------------------------------ISWNAMLAAFAQNG 591

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN- 388
              + +  F +M     KP+ ++ +SV+S C+H+G++ + +  H +       G    N 
Sbjct: 592 LGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGK--HYFDSMTRVFGISPTNE 649

Query: 389 --NAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNA 435
             + ++D+  + G LE A+++ E M  + N   W++++ +  +H D R A
Sbjct: 650 HFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLA 699


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/658 (36%), Positives = 368/658 (55%), Gaps = 32/658 (4%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           S+ YA  +F Q+        N  I   + S   + +L++F+ +L  GL  D+F+   +L+
Sbjct: 347 SVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLR 406

Query: 126 AIAR-AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           A +   E    G QVH    K G   D FV T L+ +Y   GK+ +A L+F      D+ 
Sbjct: 407 ACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLA 466

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ M+ G+  +  + E L LF  M     + D++  +    A      L  G+ +H  +
Sbjct: 467 SWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVV 526

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           I      D  + S ++ MY  CG                               +++ AR
Sbjct: 527 IKMRFHYDLFVISGILDMYLKCG-------------------------------EMKSAR 555

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            +F+Q+   D + W+ +ISG  EN   ++AL  +++M++ G++PD+ T  +++ AC+ L 
Sbjct: 556 KVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLT 615

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L+Q ++IH  I K     D  V  +++DMYAKCG++E A  +F RM  R+V  W +MI 
Sbjct: 616 ALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIV 675

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
             A HG+A  AL FFN+MK   + P+ VTFIGVL ACSH+GL  +  + F SM   Y + 
Sbjct: 676 GLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVE 735

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P+ EHY C+VD   RA  ++EA ++V +MPF  +  ++ +L+ ACRV G+ E  E  A++
Sbjct: 736 PEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEK 795

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           L  +DP    A VLLSNIYA   +W++    R  MK   + KE   S I+M N+V+ F+ 
Sbjct: 796 LFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVA 855

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            DRSH++TD IY K+  V+  +K  GYVPD   ALVD+E+E+K   + +HSEKLA+ YGL
Sbjct: 856 GDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGL 915

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + +   + +R++KNLRVC DCHN IK +S V+ REIV+RD  RFHH++ G+CSC DYW
Sbjct: 916 MKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 225/471 (47%), Gaps = 34/471 (7%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           YA  +F         V NK + +   +     A+  F  M+   +  D  ++  IL  +A
Sbjct: 249 YATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVA 308

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
               L  G Q+HG   + G+     V    + MY   G +  AR MF +M   D++ W+ 
Sbjct: 309 SLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNT 368

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDN 247
           +I G  ++GL +  L LF ++  S + PD+  ++ +L ACS    +   G  VH   +  
Sbjct: 369 VISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKA 428

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
            + LD+                                VSTA++  YS+ G++E+A L+F
Sbjct: 429 GIVLDS-------------------------------FVSTALIDVYSKGGKMEEAELLF 457

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
                 DL  W+AM+ G+  +++ +EAL+LF+ M   G K D++T  +   A   L  L 
Sbjct: 458 HNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQ 517

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           Q ++IH  + K  F  DL V + I+DMY KCG ++SAR+VF ++   + ++WT++I+   
Sbjct: 518 QGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCV 577

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            +G+   AL  +++M+   + P+  TF  ++ ACS    +++G++I A++  + N     
Sbjct: 578 ENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIM-KLNCAFDP 636

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
                +VD++ +   + +A  L   M    +V +W +++     HG  E A
Sbjct: 637 FVMTSLVDMYAKCGNIEDAYGLFRRMN-TRSVALWNAMIVGLAQHGNAEEA 686



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 129/506 (25%), Positives = 230/506 (45%), Gaps = 58/506 (11%)

Query: 97  RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQT 156
           +   A  +F  +    +   R +  P+ K             + G   K+G   D FV  
Sbjct: 102 KTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAG 161

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
            LV +Y    +I +AR++FD+M  RD+V W+VM+  Y + G  DEVL LF     S + P
Sbjct: 162 ALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRP 221

Query: 217 DEMVLSKIL------SACSRAGNLSYGEAVHEFIIDN-------NVALDAHLQS------ 257
           D + +  IL      +   R        A   F+ D+       N  L ++LQ+      
Sbjct: 222 DCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEA 281

Query: 258 --------------------TLITMYANCGCMDMAKGLFDKVLL----KNLVVSTAMVSG 293
                                ++++ A+   +++ K +   V+     + + V+ + ++ 
Sbjct: 282 VDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINM 341

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           Y +AG V  AR +F QM E DLI W+ +ISG A +   + +L+LF ++   G+ PD+ T+
Sbjct: 342 YVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTI 401

Query: 354 LSVISACAHL-GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
            SV+ AC+ L       +++H    K     D  V+ A+ID+Y+K G +E A  +F    
Sbjct: 402 TSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQD 461

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
             ++ SW +M++ F +  + R AL  F+ M +     + +TF     A      + +G++
Sbjct: 462 GFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQ 521

Query: 473 IFASMTNEYNIPPKYEHYGCMV-----DLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
           I A +     I  ++ HY   V     D++ +   ++ A ++   +P +P+ V W ++++
Sbjct: 522 IHAVV-----IKMRF-HYDLFVISGILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVIS 574

Query: 528 ACRVHGEIELAEFAAKQ--LLQLDPD 551
            C  +GE E A F   Q  L  + PD
Sbjct: 575 GCVENGEEEQALFTYHQMRLAGVQPD 600



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 174/394 (44%), Gaps = 52/394 (13%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD--K 177
           F  +  AIA ++ L+ G + H +    G   D +V   L+ MY  CG +  AR +FD   
Sbjct: 17  FSILRHAIADSD-LILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITP 75

Query: 178 MSYRDIVPWSVMIDGYFQNG-LFD-----EVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
            S RD+V ++ ++  Y   G L D     E  ++F  ++ S +      LS +   C   
Sbjct: 76  QSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLY 135

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
           G+ S  EA+  + +   +  D  +   L+ +YA    +  A+ LFD++ ++++V+   M+
Sbjct: 136 GSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMM 195

Query: 292 SGYSRAGQVEDA----------------------------RLIFDQMVEK---------- 313
             Y   G  ++                             + +F++ +E+          
Sbjct: 196 KAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFV 255

Query: 314 -----DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
                D+  W+  +S Y +     EA+  F +M    +  D +T + ++S  A L  L+ 
Sbjct: 256 CDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLEL 315

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            ++IH  + +  +   + V N+ I+MY K GS+  AR +F +M+  ++ISW ++I+  A 
Sbjct: 316 GKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCAR 375

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            G    +L  F  +    + P+  T   VL ACS
Sbjct: 376 SGLEECSLRLFIDLLRSGLLPDQFTITSVLRACS 409



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 109/234 (46%), Gaps = 10/234 (4%)

Query: 1   MSTLSQPTKPLTLPTSTAISSC-SSLTHMKQTHAQILKLS-HSHHSQNSLLLKLLLTSFS 58
           M    +    +T   +   + C   L   KQ HA ++K+  H      S +L + L    
Sbjct: 491 MHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGE 550

Query: 59  LPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
           + +        A  +F+QIP+P        I     +   + AL  + +M   G+  D +
Sbjct: 551 MKS--------ARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEY 602

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +F  ++KA +    L +G Q+H    KL    DPFV T LV MY  CG I DA  +F +M
Sbjct: 603 TFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRM 662

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
           + R +  W+ MI G  Q+G  +E LN F EMK   V PD +    +LSACS +G
Sbjct: 663 NTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSG 716



 Score = 40.4 bits (93), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 13/177 (7%)

Query: 9   KPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +P     +T + +CS LT +   KQ HA I+KL       N      ++TS         
Sbjct: 598 QPDEYTFATLVKACSLLTALEQGKQIHANIMKL-------NCAFDPFVMTSLVDMYAKCG 650

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           ++  A  +F ++      + N  I  ++     + AL  F +M + G+T DR +F  +L 
Sbjct: 651 NIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLS 710

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQ--TGLVGMYGACGKILDARLMFDKMSY 180
           A + + GL      +    +  +G +P ++  + LV      G I +A  +   M +
Sbjct: 711 ACSHS-GLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPF 766


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 263/767 (34%), Positives = 415/767 (54%), Gaps = 69/767 (8%)

Query: 25  LTHMKQTHAQILKLSHSHH-SQNSLLLKLL-LTSFSLPTTTPSSLY-------------- 68
           L  ++  HA++L  +  H  S   L L+LL L + S    TP+ L+              
Sbjct: 38  LRTLRCLHARLLTAALLHDPSHPHLTLRLLHLYTLSPDLATPAVLFRADPGPVAATSLVS 97

Query: 69  -YALS--------IFSQIPAP--PSRVSNKFIRAISWSHRPKHALKVFLKML--NEGLTI 115
            YA++         F  +P     + + N  I A + +     A+ VF  +L  ++ L  
Sbjct: 98  AYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRP 157

Query: 116 DRFSFPPILKAIARAEGLL--EGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC---GKILD 170
           D +SF  +L A+ +   L      Q+H    KLG G+   V   L+ +Y  C   G   D
Sbjct: 158 DDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRD 217

Query: 171 ARLMFDKMSYRD-------------------------------IVPWSVMIDGYFQNGLF 199
           AR + D+M  +D                                V W+ MI GY Q+G+ 
Sbjct: 218 ARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMC 277

Query: 200 DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH-EFI-IDNNVALDAHL-- 255
            E   LF  M    + PDE   + +LSAC+ AG   +G++VH +FI +  +   +A L  
Sbjct: 278 AEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPV 337

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            + L+T+Y+  G + +A  +FD + LK++V    ++SGY  +G +++A  IF +M  K  
Sbjct: 338 NNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSE 397

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + W  M+SGY      ++ALKLFN+M+   +KP   T    ++AC  LG L   +++H +
Sbjct: 398 LSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAH 457

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
           + +  F       NA++ MYA+CG+++ AR VF  M   + +SW +MI+A   HG  R A
Sbjct: 458 LVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREA 517

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
           L  F++M  + I P+ ++F+ +L AC+HAGLVD+G + F SM  ++ I P  +HY  ++D
Sbjct: 518 LELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLID 577

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555
           L GRA  + EA +L++TMPF P   IW ++++ CR++G++EL  +AA QL ++ P+HDG 
Sbjct: 578 LLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGT 637

Query: 556 LVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQI 615
            +LLSN Y+   RW D   +RK M++RG+ KE  CS IE+ N+V+ FL  D  H    ++
Sbjct: 638 YILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEV 697

Query: 616 YEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRI 675
           Y  L  V ++++  GYVPD   AL D+   EK  V+  HSE+LA+ +GL+     + + +
Sbjct: 698 YRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTV 757

Query: 676 VKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +KNL++C DCH  +  +S+   REIV+RD  RFHH+KDG CSC +YW
Sbjct: 758 LKNLKICGDCHTAMMFMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/608 (39%), Positives = 356/608 (58%), Gaps = 3/608 (0%)

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR-LMFD 176
           F+F   L  + +    +E  Q+H    K G   DP+  T  +    +      A  + F+
Sbjct: 9   FAFEHNLSCLQKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFN 68

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
                D   W++MI G   +   D  L L+  M   +   +      +L ACS       
Sbjct: 69  GFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQE 128

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
              +H  I       D +  ++LI  YA  G    A  LFD++   + V   +++ GY +
Sbjct: 129 TTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVK 188

Query: 297 AGQVEDARLIFDQMVEKD-LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           AG+++ A  +F +M EK+  I W+ MISGY +    +EAL+LF+EMQ   + PD V++ S
Sbjct: 189 AGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLAS 248

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
            +SAC+ LG L+Q + IH Y +K     D  +   +IDMYAKCG +E A  VF+ M+ ++
Sbjct: 249 ALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKS 308

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V  WT++I+ +A HG  R A+  F +M++  + PN +TF  VL ACS+ GLV+EG+ +F 
Sbjct: 309 VQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFN 368

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           ++  +YN+ P  EHYGCMVDL GRA LL EA   ++ MP  PN VIWGSL+ AC++H  I
Sbjct: 369 TIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNI 428

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           EL E   + L+++D +H G  V ++NI+A  K+W    E R+ M+E+G++K   CS I +
Sbjct: 429 ELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISL 488

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDL-EDEEKREVILWH 654
               +EFL  DRSH +  +I  K   V  +L+  GYVP++   L+DL +DEEK  ++  H
Sbjct: 489 EGTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQH 548

Query: 655 SEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDG 714
           SEKLA+ YGL+ +K  + IRI+KNLRVC+DCH  + L+SK+Y R+IV+RDRTRFHH+KDG
Sbjct: 549 SEKLAITYGLMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDG 608

Query: 715 VCSCKDYW 722
            CSC DYW
Sbjct: 609 KCSCGDYW 616



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/452 (27%), Positives = 204/452 (45%), Gaps = 77/452 (17%)

Query: 17  TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLK--LLLTSFSLPTTTPSSLYYALSIF 74
           + +  C +   +KQ HA++LK         S LL+    +T F     + S   YA  +F
Sbjct: 16  SCLQKCPTEVELKQIHARMLK---------SGLLQDPYAMTKFLSFCLSSSFSSYAHDVF 66

Query: 75  -SQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
            +    P + + N  IR +S S +P  +L ++ +ML      + ++FP +LKA +     
Sbjct: 67  FNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAF 126

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV--------- 184
            E  Q+H   TK G+G D +    L+  Y   G    A L+FD++   D V         
Sbjct: 127 QETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGY 186

Query: 185 -----------------------PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221
                                   W+ MI GY Q G+  E L LF EM+ SNV PD + L
Sbjct: 187 VKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSL 246

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           +  LSACS+ G L  G+ +H +       +D+ L   LI MYA CG M+ A G+F  +  
Sbjct: 247 ASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKT 306

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           K++ V TA++SGY+  G                                 +EA+  F EM
Sbjct: 307 KSVQVWTALISGYAYHGL-------------------------------GREAISKFLEM 335

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIIDMYAKCGS 400
           Q  G+KP+ +T  +V++AC++ G++++ + +   I+++      +     ++D+  + G 
Sbjct: 336 QNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGL 395

Query: 401 LESAREVFERMR-RRNVISWTSMINAFAIHGD 431
           L  A    ++M  + N + W S++ A  IH +
Sbjct: 396 LNEANRFIQKMPLKPNAVIWGSLLKACQIHKN 427


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/607 (38%), Positives = 360/607 (59%), Gaps = 42/607 (6%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+  Y +   +  AR +FD++  R+++  +VMI  Y  NG + E + +F  M   NV PD
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
                 +L ACS +G +  G  +H       ++    + + L++MY  CG +  A+ + D
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDA---------------------------------- 303
           ++  +++V   ++V GY++  + +DA                                  
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259

Query: 304 ---RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
              + +F +M +K L+ W+ MI  Y +N  P EA++L++ M+  G +PD V++ SV+ AC
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
                L   ++IH YI++     +L + NA+IDMYAKCG LE AR+VFE M+ R+V+SWT
Sbjct: 320 GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT 379

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +MI+A+   G   +A+  F+K++D  + P+ + F+  L ACSHAGL++EGR  F  MT+ 
Sbjct: 380 AMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 439

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
           Y I P+ EH  CMVDL GRA  ++EA   ++ M   PN  +WG+L+ ACRVH + ++   
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
           AA +L QL P+  G  VLLSNIYAK  RW++V  +R  MK +G+ K    S +E+N  ++
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 559

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
            FL  DRSH Q+D+IY +L+ ++ ++K  GYVPD  SAL D+E+E+K   +  HSEKLA+
Sbjct: 560 TFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAI 619

Query: 661 CYGLISSKKD-----SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
            + L+++K++     + IRI KNLR+C DCH   KL+S++ +REI+IRD  RFH ++ GV
Sbjct: 620 VFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGV 679

Query: 716 CSCKDYW 722
           CSC DYW
Sbjct: 680 CSCGDYW 686



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 214/437 (48%), Gaps = 44/437 (10%)

Query: 45  QNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKV 104
            +SL +KL+    SL          A  +F +IP     + N  IR+   +      +KV
Sbjct: 73  NSSLGVKLMRAYASLKDVAS-----ARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKV 127

Query: 105 FLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA 164
           F  M    +  D ++FP +LKA + +  ++ G ++HG  TK+G  S  FV  GLV MYG 
Sbjct: 128 FGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGK 187

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
           CG + +ARL+ D+MS RD+V W+ ++ GY QN  FD+ L +  EM+   +  D   ++ +
Sbjct: 188 CGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASL 247

Query: 225 LSACSRAG--NLSYGEAV-----HEFIIDNNVALDAHLQSTL----ITMYAN-------- 265
           L A S     N+ Y + +      + ++  NV +  ++++ +    + +Y+         
Sbjct: 248 LPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEP 307

Query: 266 -----------CG---CMDMAKGLFD----KVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
                      CG    + + K +      K L+ NL++  A++  Y++ G +E AR +F
Sbjct: 308 DAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVF 367

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
           + M  +D++ W+AMIS Y  +    +A+ LF+++Q  G+ PD +  ++ ++AC+H G+L+
Sbjct: 368 ENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLE 427

Query: 368 QAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR-NVISWTSMINA 425
           + +    L  D       L     ++D+  + G ++ A    + M    N   W +++ A
Sbjct: 428 EGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGA 487

Query: 426 FAIHGDARNALIFFNKM 442
             +H D    L+  +K+
Sbjct: 488 CRVHSDTDIGLLAADKL 504



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 166/367 (45%), Gaps = 45/367 (12%)

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           N  +   ++  Y+    V  AR +FD++ E+++I  + MI  Y  N    E +K+F  M 
Sbjct: 73  NSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMC 132

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
            C ++PD  T   V+ AC+  G +   ++IH    K      L V N ++ MY KCG L 
Sbjct: 133 GCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLS 192

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            AR V + M RR+V+SW S++  +A +    +AL    +M+   I  +  T   +L A S
Sbjct: 193 EARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVS 252

Query: 463 HAGL--VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP---FAP 517
           +     V   +++F  M  +  +      +  M+ ++ +  +  EA+EL   M    F P
Sbjct: 253 NTTTENVMYVKDMFFKMGKKSLVS-----WNVMIGVYMKNAMPVEAVELYSRMEADGFEP 307

Query: 518 NVVIWGSLMAAC----------RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
           + V   S++ AC          ++HG IE  +     LL+       AL+   ++YAK  
Sbjct: 308 DAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE------NALI---DMYAKCG 358

Query: 568 RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627
             +   ++ ++MK R ++   A          Y F     S +  D +      + S+L+
Sbjct: 359 CLEKARDVFENMKSRDVVSWTAMI------SAYGF-----SGRGCDAV-----ALFSKLQ 402

Query: 628 PAGYVPD 634
            +G VPD
Sbjct: 403 DSGLVPD 409


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/562 (41%), Positives = 348/562 (61%), Gaps = 5/562 (0%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGY--FQNGLFDEVLNLFEEMKMSNVEPDEMVLSK 223
           G +  A  +FD++   D+  ++ MI  +        + +      +++S   P+      
Sbjct: 63  GSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVF 122

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           +  AC     +  GE +    I   +  +  + + +I MYAN G +D A+ +FD  L ++
Sbjct: 123 VFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQD 182

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           L     M+ GY  +G++  A+ +FD+M E+D++ W+ +I+GY +    +EAL LF+EM  
Sbjct: 183 LYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQ 242

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
            G  P++ T+ S ++ACA+L  LDQ + IH+YIDK+    + R+  +++DMYAKCG ++ 
Sbjct: 243 TGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDF 302

Query: 404 AREVF--ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
           A +VF  E   +  V  W +MI  +A+HG ++ A+  F +MK E + PN VTF+ +L AC
Sbjct: 303 AAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNAC 362

Query: 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI 521
           SH  LV+EGR  F SM + Y I P+ EHYGCMVDL GR+ LL+EA E V  MP AP+  I
Sbjct: 363 SHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATI 422

Query: 522 WGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581
           WG+L+ ACR+H +IE  +   K + +LD DH G  VLL+N+Y+   +W +   +R+ ++ 
Sbjct: 423 WGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEV 482

Query: 582 RGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVD 641
            G  K   CS IE+N   ++FL  DRSH QT Q+Y  L+E+ ++LK AGYVP+    L+D
Sbjct: 483 SGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLD 542

Query: 642 LEDEEKREVILW-HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           ++DEE +E  L  HSEKLA+ +GLI++   + IRIVKNLRVC DCH   K +SKVY REI
Sbjct: 543 IDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREI 602

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           ++RDR R+HH+KDG CSCKDYW
Sbjct: 603 IVRDRIRYHHFKDGFCSCKDYW 624



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 139/513 (27%), Positives = 231/513 (45%), Gaps = 83/513 (16%)

Query: 2   STLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHH--SQNSLLLKLLLTSFSL 59
           ST  +P     L   + + SC S+  +KQTHA ++      H  + N LL  L+ +SF  
Sbjct: 6   STFKKPLNSNQLQLFS-LESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFG- 63

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKH-ALKVFLKMLN-EGLTIDR 117
                 SL YA  +F QIP P   + N  I+A +      H ++++FL M+   G   +R
Sbjct: 64  ------SLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNR 117

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
           ++F  + KA     G+LEG Q+     K+G  S+ FV   ++ MY   G + +AR +FD 
Sbjct: 118 YTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDW 177

Query: 178 MSYRDIVPWSVMID-------------------------------GYFQNGLFDEVLNLF 206
              +D+  W++MI                                GY Q G F E L+LF
Sbjct: 178 SLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLF 237

Query: 207 EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
            EM  +   P+E  L+  L+AC+    L  G  +H +I  + + ++  L ++L+ MYA C
Sbjct: 238 HEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKC 297

Query: 267 GCMDMAKGLF-DKVLLKNLVVS-TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
           G +D A  +F D+  LK  V    AM+ GY+  G+                         
Sbjct: 298 GEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGK------------------------- 332

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
                  +EA+ LF +M+V  + P+KVT +++++AC+H G L +  R +     +++G +
Sbjct: 333 ------SKEAIDLFEQMKVEKVSPNKVTFVALLNACSH-GKLVEEGRGYFKSMASSYGIE 385

Query: 385 LRVNN--AIIDMYAKCGSLESARE-VFERMRRRNVISWTSMINAFAIHGDARNALIFFNK 441
             + +   ++D+  + G L+ A E VF      +   W +++ A  IH D          
Sbjct: 386 PEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKI 445

Query: 442 MKDESIDPNGV-TFIGVLYACSHAGLVDEGREI 473
           +K+   D  G    +  LY+ S  G  DE + +
Sbjct: 446 IKELDSDHIGCHVLLANLYSAS--GQWDEAKAV 476


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/656 (37%), Positives = 373/656 (56%), Gaps = 32/656 (4%)

Query: 68   YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
            Y+A  +F+ +        N  I + + S   + ++ +F+ +L+EGL  D F+   +L+A 
Sbjct: 956  YFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRAC 1015

Query: 128  AR-AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            +   +GL    Q+H    K G  +D FV T L+ +Y   GK+ +A  +F      D+  W
Sbjct: 1016 SSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACW 1075

Query: 187  SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
            + M+ GY       + L LF  +  S  + D++ L+    AC     L  G+ +H   I 
Sbjct: 1076 NAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIK 1135

Query: 247  NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
                 D H+ S ++ MY  CG  DM                              +A ++
Sbjct: 1136 AGFDSDLHVNSGILDMYIKCG--DMV-----------------------------NAGIV 1164

Query: 307  FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
            F+ +   D + W++MISG  +N +  +AL++++ M+   + PD+ T  ++I A + +  L
Sbjct: 1165 FNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTAL 1224

Query: 367  DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
            +Q +++H  + K     D  V  +++DMYAKCG++E A  +F++M  RN+  W +M+   
Sbjct: 1225 EQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGL 1284

Query: 427  AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
            A HG+A  A+  F  MK   I+P+ V+FIG+L ACSHAGL  E  E   SM N+Y I P+
Sbjct: 1285 AQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPE 1344

Query: 487  YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
             EHY C+VD  GRA L++EA +++ETMPF  +  I  +L+ ACR+ G++E  +  A +L 
Sbjct: 1345 IEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLF 1404

Query: 547  QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
             L+P    A VLLSNIYA   RW DV + RK MK + + K+   S I++ N ++ F+  D
Sbjct: 1405 ALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDD 1464

Query: 607  RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS 666
            RSH Q D IY+K+ E++  ++  GYVPD    L+D+EDEEK   + +HSEKLA+ YGLIS
Sbjct: 1465 RSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLIS 1524

Query: 667  SKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            +   + IR++KNLRVC DCHN IK +SKV+ REIV+RD  RFHH++DGVCSC DYW
Sbjct: 1525 TPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 143/527 (27%), Positives = 239/527 (45%), Gaps = 76/527 (14%)

Query: 86   NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
            NK +    W+     A++ F+ M    +  D  +   +L A+A  + L  G QVHG+  K
Sbjct: 873  NKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVK 932

Query: 146  LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
             G  SD  V   LV MY   G    AR +F+ M + D++ W+ MI    Q+ L +E +NL
Sbjct: 933  SGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNL 992

Query: 206  FEEMKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
            F ++    ++PD   L+ +L ACS     L+    +H   +      D+ + +TLI +Y+
Sbjct: 993  FIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYS 1052

Query: 265  NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
              G M                               E+A  +F    + DL CW+AM+ G
Sbjct: 1053 KSGKM-------------------------------EEAEFLFQNKDDLDLACWNAMMFG 1081

Query: 325  YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
            Y   N  ++AL+LF+ +   G K D++T+ +   AC  L +LDQ ++IH +  K  F  D
Sbjct: 1082 YIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSD 1141

Query: 385  LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
            L VN+ I+DMY KCG + +A  VF  +   + ++WTSMI+    +G+   AL  +++M+ 
Sbjct: 1142 LHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQ 1201

Query: 445  ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
              + P+  TF  ++ A S    +++GR++ A++     +   +     +VD++ +   + 
Sbjct: 1202 SRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGT-SLVDMYAKCGNIE 1260

Query: 505  EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
            +A  L + M    N+ +W +++     HG  E A                          
Sbjct: 1261 DAYRLFKKMNVR-NIALWNAMLVGLAQHGNAEEAV------------------------- 1294

Query: 565  KDKRWQDVGELRKSMKERGILKER--------ACSRIEMNNEVYEFL 603
                      L KSMK  GI  +R        ACS   + +E YE+L
Sbjct: 1295 ---------NLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYL 1332



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 158/574 (27%), Positives = 261/574 (45%), Gaps = 63/574 (10%)

Query: 17   TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
            TAIS+  +L   K THA+I+    S  + +  L   LLT +S       SL  A  +F  
Sbjct: 630  TAIST-HNLLLGKCTHARIVV---SGSAGDHFLSNNLLTMYS----KCGSLSSARQVFDT 681

Query: 77   IPAPPSRVSNKFIRAISWS-----HRPKHALKVFLKMLNEGL-TIDRFSFPPILKAIARA 130
             P       N  + A + S        +  L +F ++L   L +  R +  P+LK    +
Sbjct: 682  TPERDLVTWNAILGAYAASVDSNDGNAQEGLHLF-RLLRASLGSTTRMTLAPVLKLCLNS 740

Query: 131  EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
              L     VHG   K+G   D FV   LV +Y  CG++ DARL+FD M  RD+V W++M+
Sbjct: 741  GCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMML 800

Query: 191  DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR----------------AGNL 234
             GY Q GL  E   LF E   S + PDE  +  IL+  S                 A  L
Sbjct: 801  KGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKL 860

Query: 235  SYGE-----------------------AVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
            S  +                       A+  F+  N + +D    + L+ + A  G  D+
Sbjct: 861  SLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDL 920

Query: 272  AKG------LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
              G           L  ++ V+ ++V+ YS+ G    AR +F+ M   DLI W++MIS  
Sbjct: 921  ELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSC 980

Query: 326  AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL-GVLDQAQRIHLYIDKNAFGGD 384
            A+++  +E++ LF ++   G+KPD  T+ SV+ AC+ L   L+ +++IH++  K     D
Sbjct: 981  AQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIAD 1040

Query: 385  LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
              V   +ID+Y+K G +E A  +F+     ++  W +M+  + I  D + AL  F+ +  
Sbjct: 1041 SFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHK 1100

Query: 445  ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
                 + +T      AC    L+D+G++I A           + + G ++D++ +   + 
Sbjct: 1101 SGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSG-ILDMYIKCGDMV 1159

Query: 505  EALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
             A  +V     AP+ V W S+++ C  +G  + A
Sbjct: 1160 NA-GIVFNYISAPDDVAWTSMISGCVDNGNEDQA 1192



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 196/457 (42%), Gaps = 57/457 (12%)

Query: 123  ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
            +L+       LL G   H      G   D F+   L+ MY  CG +  AR +FD    RD
Sbjct: 627  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 183  IVPWSVMIDGYF-----QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
            +V W+ ++  Y       +G   E L+LF  ++ S      M L+ +L  C  +G L   
Sbjct: 687  LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746

Query: 238  EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
            E VH + I   +  D  +   L+ +Y+ CG M  A+ LFD +  +++V+   M+ GY + 
Sbjct: 747  EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 806

Query: 298  GQVEDA-------------------RLIFDQMVE-------------------------- 312
            G  ++A                   +LI + + E                          
Sbjct: 807  GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDN 866

Query: 313  KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
             D+ CW+  +S          A++ F  M    +  D VT+L V++A A    L+  +++
Sbjct: 867  PDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQV 926

Query: 373  HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
            H    K+    D+ V N++++MY+K G    AREVF  M+  ++ISW SMI++ A     
Sbjct: 927  HGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLE 986

Query: 433  RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE---GREIFASMTNEYNIPPKYEH 489
              ++  F  +  E + P+  T   VL ACS   L+D     R+I        NI   +  
Sbjct: 987  EESVNLFIDLLHEGLKPDHFTLASVLRACS--SLIDGLNISRQIHVHALKTGNIADSFVA 1044

Query: 490  YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLM 526
               ++D++ ++  + EA  L +      ++  W ++M
Sbjct: 1045 T-TLIDVYSKSGKMEEAEFLFQNKD-DLDLACWNAMM 1079



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 138/305 (45%), Gaps = 12/305 (3%)

Query: 6    QPTKPLTLPTSTAISSCSSL-THMKQTHAQILKLS-HSHHSQNSLLLKLLLTSFSLPTTT 63
            + +  +TL T+     C  L    KQ HA  +K    S    NS +L + +         
Sbjct: 1103 EKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKC------- 1155

Query: 64   PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
               +  A  +F+ I AP        I     +     AL+++ +M    +  D ++F  +
Sbjct: 1156 -GDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATL 1214

Query: 124  LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
            +KA +    L +G Q+H    KL   SDPFV T LV MY  CG I DA  +F KM+ R+I
Sbjct: 1215 IKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNI 1274

Query: 184  VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHE 242
              W+ M+ G  Q+G  +E +NLF+ MK   +EPD +    ILSACS AG  S   E +H 
Sbjct: 1275 ALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHS 1334

Query: 243  FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVE 301
               D  +  +    S L+      G +  A  + + +  K +  ++ A++      G VE
Sbjct: 1335 MPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVE 1394

Query: 302  DARLI 306
              + +
Sbjct: 1395 TGKRV 1399


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 252/765 (32%), Positives = 414/765 (54%), Gaps = 106/765 (13%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83
           + T  K  H+ I+K   +     + LL  L++S++   + P    YA  +F Q+P P   
Sbjct: 24  NFTKAKNLHSHIIK---TLPYPETFLLNNLISSYAKLGSIP----YACKVFDQMPHPNLY 76

Query: 84  VSNKFIRA----------------------ISWS------------HRPKHALKVFLKML 109
             N  + A                      +SW+            ++   A  + LK  
Sbjct: 77  SWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLK-- 134

Query: 110 NEG-LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA---- 164
           N+G   ++R +F  +L   ++   +  G Q+HG   K GF S  FV + LV MY      
Sbjct: 135 NDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMI 194

Query: 165 ---------------------------CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
                                      CG++ D++ +F +M  RD + W+ MI G+ QNG
Sbjct: 195 SCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNG 254

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
           L  + +++F EMK+ N++ D+     +L+AC     L  G+ VH +II  +         
Sbjct: 255 LDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYK------- 307

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
                                    N+ V++A+V  Y +   ++ A  +F +M  K+++ 
Sbjct: 308 ------------------------DNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVS 343

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W+AM+ GY +N + +EA+K F++MQ  G++PD  T+ SVIS+CA+L  L++  + H    
Sbjct: 344 WTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARAL 403

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
            +     + V+NA++ +Y KCGS+E +  +F  +  ++ ++WT++++ +A  G A   + 
Sbjct: 404 TSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIG 463

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F  M    + P+ VTFIGVL ACS AGLV++G +IF SM NE+ I P  +HY CM+DLF
Sbjct: 464 LFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLF 523

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557
            RA  + EA   +  MPF+P+ + W +L+++CR +G +++ ++AA+ L++LDP +  + V
Sbjct: 524 SRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYV 583

Query: 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYE 617
           LLS++YA   +W++V  LRK M+++G+ KE  CS I+  N+V+ F   D+S+  +DQIY 
Sbjct: 584 LLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYS 643

Query: 618 KLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVK 677
           +L ++  ++   GYVPD++S L D+ D EK +++  HSEKLA+ +GL+       IR+VK
Sbjct: 644 ELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVK 703

Query: 678 NLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           NLRVC DCHN  K +SK+  REI++RD  RFH +KDG CSC D+W
Sbjct: 704 NLRVCSDCHNATKYISKITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 170/367 (46%), Gaps = 45/367 (12%)

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           +L  C    N +  + +H  II      +  L + LI+ YA  G +  A  +FD++   N
Sbjct: 15  LLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPN 74

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM-- 341
           L     ++S YS+ G+V +   +FD M  +D + W+++ISGYA      +++K +N M  
Sbjct: 75  LYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLK 134

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK---- 397
                  +++T  +++   +  G +   ++IH ++ K  F   + V + ++DMY+K    
Sbjct: 135 NDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMI 194

Query: 398 ---------------------------CGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
                                      CG +E ++ +F  MR R+ ISWTSMI  F  +G
Sbjct: 195 SCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNG 254

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH- 489
             R+A+  F +MK E++  +  TF  VL AC     + EG+++ A     Y I   Y+  
Sbjct: 255 LDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHA-----YIIRTDYKDN 309

Query: 490 ---YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA--EFAAKQ 544
                 +VD++ +   ++ A  + + M    NVV W +++     +G  E A   F+  Q
Sbjct: 310 IFVASALVDMYCKCKNIKSAEAVFKKMT-CKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQ 368

Query: 545 LLQLDPD 551
              ++PD
Sbjct: 369 KYGIEPD 375



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 47/221 (21%)

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           +++  C       +A+ +H +I K     +  + N +I  YAK GS+  A +VF++M   
Sbjct: 14  ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHP 73

Query: 415 NVISWTSMINAFA--------------------------IHGDARNALIF-----FNKM- 442
           N+ SW ++++A++                          I G A   LI+     +N M 
Sbjct: 74  NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLML 133

Query: 443 -KDESIDPNGVTFIGVLYACSHAGLVDEGREI------FASMTNEYNIPPKYEHYGCMVD 495
             D S + N +TF  +L   S  G V  GR+I      F  M+  +   P       +VD
Sbjct: 134 KNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSP-------LVD 186

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           ++ +  ++  A ++ + +P   NVV++ +L+      G +E
Sbjct: 187 MYSKMGMISCARKVFDELP-EKNVVMYNTLIMGLMRCGRVE 226


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/591 (38%), Positives = 362/591 (61%), Gaps = 6/591 (1%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA--RLMFDKMSYRDIVPWSVMIDGYFQ 195
           Q+HG   + G     ++ T L+      G  +D   R + + + +R+   W+ +I GY  
Sbjct: 68  QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVIRGYTI 127

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
            G FDE + ++  M+   + P     S +L AC   G+L+ G   H            ++
Sbjct: 128 EGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCFVYV 187

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            +T+I MY  CG +  A+ +FD++  ++++  T +++ Y+R G +E A  +F+ +  KD+
Sbjct: 188 GNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDM 247

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + W+AM++G+A+N  PQEAL+ F+ M+  G++ D+VT+   ISACA LG    A R    
Sbjct: 248 VAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQI 307

Query: 376 IDKNAFGGD--LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
             K+ +     + + +A+IDMY+KCG++E A  VF  M  +NV S++SMI   A HG A+
Sbjct: 308 AQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQ 367

Query: 434 NALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
            AL  F+ M  ++ I PN VTF+G L ACSH+GLVD+GR++FASM   + + P  +HY C
Sbjct: 368 EALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTC 427

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           MVDL GRA  L+EALEL++TM   P+  +WG+L+ ACR+H   ++AE AA+ L +L+PD 
Sbjct: 428 MVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDI 487

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACS-RIEMNNEVYEFLTADRSHKQ 611
            G  +LLSN+Y+    W  V  +RK +KE+G+ K  A S  ++ N ++++F   + +H  
Sbjct: 488 IGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPM 547

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS 671
           + +I +KL E++  L   GY PD+ S   D+ D  KR +++ H+EKLAL + L+++ +D 
Sbjct: 548 SKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDY 607

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            I+I+KNLR+C+DCH F++L S+V  R I++RD  RFHH++ G CSC D+W
Sbjct: 608 TIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 119/479 (24%), Positives = 204/479 (42%), Gaps = 95/479 (19%)

Query: 2   STLSQPTKPLTLPTSTAISS---CSSLTHMKQTHAQILK--LSHSHHSQNSLLLKLL--L 54
           ST S+ +    L  S+ IS    C +L  +KQ H  +L+  L  S +    +L KL+  L
Sbjct: 37  STFSEISHQRELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCY----ILTKLIRTL 92

Query: 55  TSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKF-----IRAISWSHRPKHALKVFLKML 109
           T   +P          +  + +    P +  N F     IR  +   +   A+ ++  M 
Sbjct: 93  TKLGVP----------MDPYPRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMR 142

Query: 110 NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL 169
            E +T   F+F  +LKA      L  G Q H    +L      +V   ++ MY  CG I+
Sbjct: 143 KEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIV 202

Query: 170 DARLMFDKMSYRDI-------------------------------VPWSVMIDGYFQNGL 198
            AR +FD+M  RD+                               V W+ M+ G+ QN  
Sbjct: 203 CARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAK 262

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH--LQ 256
             E L  F+ M+ S +  DE+ ++  +SAC++ G   Y +   +    +  +   H  + 
Sbjct: 263 PQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIG 322

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           S LI MY+ CG                                VE+A  +F  M  K++ 
Sbjct: 323 SALIDMYSKCG-------------------------------NVEEAVNVFVSMNNKNVF 351

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQV-CGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
            +S+MI G A +   QEAL LF+ M     +KP+ VT +  ++AC+H G++DQ +++   
Sbjct: 352 SYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFAS 411

Query: 376 IDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD 431
           + +  FG +   ++   ++D+  + G L+ A E+ + M    +   W +++ A  IH +
Sbjct: 412 MYQT-FGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNN 469


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/514 (42%), Positives = 331/514 (64%)

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M    V+P++  LS ++ AC+   +L  G+  H +II      D  +Q+ L+ MYA CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           ++ A  +FDK+  ++     AM++G+++   ++ A  +F +M E+D++ W+A+I+GYA+N
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
            +  E+L +FN+M+  GMK D+  M SV+SACA L  L+  ++ H Y+ ++ F  D+ V 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           +A++DMYAK GS+E A +VF++M +RN +SW S+I   A HG   +A++ F +M    I 
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
           PN ++F+GVL ACSH GLV+EGR  F  MT  Y I P   HY CM+DL GRA  L EA  
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
            +  MP  P+V +WG+L+ ACR+HG  ELA+  A+ LL ++    G  VLLSNIYA   +
Sbjct: 301 FINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQ 360

Query: 569 WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
           W D  ++RK MK+RG++K+   S IE+   ++ F+  + SH Q  +I+E L  +  ++K 
Sbjct: 361 WDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKA 420

Query: 629 AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
           AGYVP+ +  L D+ED+EK   +  HSEKLA+ +G+I++   + IR+ KNLRVC DCH  
Sbjct: 421 AGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHTV 480

Query: 689 IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           IK +S  + R+IV+RD  RFHH+KDG CSC DYW
Sbjct: 481 IKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 172/357 (48%), Gaps = 64/357 (17%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           M+ +G+  ++F+   ++KA A    L +G Q H    K+GF SD  VQT LV MY  CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 168 ILDARLMFDK-------------------------------MSYRDIVPWSVMIDGYFQN 196
           + DA  +FDK                               MS RD+V W+ +I GY QN
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           G  DE LN+F +M+ + ++ D  ++  +LSAC+    L  G   H +++ +  ALD  + 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           S L+ MYA  G M+ A  +FDK+  +N V   ++++G ++ G+  DA L+F+QM++    
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQ---- 236

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ-RIHLY 375
                                       G+KP++++ + V+SAC+H G++++ +   +L 
Sbjct: 237 ---------------------------AGIKPNEISFVGVLSACSHTGLVNEGRGYFNLM 269

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD 431
                   D+     +ID+  + G L+ A      M    +V  W +++ A  IHG+
Sbjct: 270 TQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGN 326



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 148/344 (43%), Gaps = 43/344 (12%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           + +  KP     ST + +C+S+  +   KQ H  I+K+      ++ ++++  L      
Sbjct: 2   VGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGF----ESDVVVQTALVHM--- 54

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALK----------------- 103
                SL  A  +F ++    +R  N  I   + +   K ALK                 
Sbjct: 55  YARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVI 114

Query: 104 --------------VFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFG 149
                         VF +M   G+  DRF    +L A A    L  G Q H    + GF 
Sbjct: 115 AGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFA 174

Query: 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
            D  V + LV MY   G + DA  +FDKM  R+ V W+ +I G  Q+G  ++ + LFE+M
Sbjct: 175 LDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQM 234

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN-NVALDAHLQSTLITMYANCGC 268
             + ++P+E+    +LSACS  G ++ G      +  N  +  D    + +I +    GC
Sbjct: 235 LQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGC 294

Query: 269 MDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           +D A+   + + ++ ++ V  A++      G  E A+ I + ++
Sbjct: 295 LDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLL 338


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/616 (38%), Positives = 352/616 (57%), Gaps = 36/616 (5%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           ML  G+  D F+FP I+KA +       G+++H    K G+ S  F+   L+ MYG C K
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
              +R +FD+M  ++ V WS +I    Q+    E  +LF +M      P       IL+A
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSR---GAILNA 117

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
            +   +    + V+  +++N +  D  +QS    M+A CG +++A+ LFD ++ K+LV  
Sbjct: 118 MACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVT- 176

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
                                         W+  I  Y + + P EAL L  +M + G+ 
Sbjct: 177 ------------------------------WATTIEAYVKADMPLEALGLLKQMMLQGIF 206

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD-LRVNNAIIDMYAKCGSLESARE 406
           PD +T+L VI AC+ L     A  +H  I    F    L V  A+ID+Y KCGSL  AR+
Sbjct: 207 PDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARK 266

Query: 407 VFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL 466
           VF+ M+ RN+I+W++MI+ + +HG  R AL  F++MK  S+ P+ +TF+ +L ACSH+GL
Sbjct: 267 VFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMK-ASVKPDHITFVSILSACSHSGL 325

Query: 467 VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLM 526
           V EG E F SM  ++ + P+ EHY CMVD+ GRA  L EA + +E MP  PN  +WG+L+
Sbjct: 326 VAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALL 385

Query: 527 AACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILK 586
            ACR+H  ++LAE  A+ L  LDP + G  V+L NIY    + ++   +R  MK RG+ K
Sbjct: 386 GACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKK 445

Query: 587 ERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEE 646
               S IE+ N++Y F+  DRSH QTD IY +L  ++  ++  GY PDI+  L D+++E 
Sbjct: 446 IAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLHDVDEET 505

Query: 647 KREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRT 706
           K  ++  HSEKLA+ +GL++    S IRI KNLRVC DCH   K +SKV  REIV+RD  
Sbjct: 506 KESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGDCHTATKFISKVTGREIVVRDAH 565

Query: 707 RFHHYKDGVCSCKDYW 722
           RFHH+K+G CSC+DYW
Sbjct: 566 RFHHFKNGACSCRDYW 581



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 205/462 (44%), Gaps = 60/462 (12%)

Query: 9   KPLTLPTSTAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +P        I +CS L H +   + H  ++K  +            +  S SL T    
Sbjct: 7   QPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQ---------VFISNSLITMYGK 57

Query: 66  SLYYALS--IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
              Y LS  +F ++P   +   +  I A     R K    +F +ML+EG    R S   I
Sbjct: 58  CDKYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEG---SRPSRGAI 114

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L A+A      E   V+ +  + G   D  VQ+   GM+  CG++  AR +FD +  +D+
Sbjct: 115 LNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDL 174

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           V W+  I+ Y +  +  E L L ++M +  + PD + L  ++ ACS   +      VH  
Sbjct: 175 VTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGI 234

Query: 244 IIDN---NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           I      N  L   +++ LI +Y  CG +  A+ +FD +  +N++  +AM+SGY   G  
Sbjct: 235 ITTGFFYNQLL--AVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHG-- 290

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
                            W             +EAL LF++M+   +KPD +T +S++SAC
Sbjct: 291 -----------------WG------------REALNLFDQMKA-SVKPDHITFVSILSAC 320

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVI 417
           +H G++ +       + ++ FG   R  +   ++D+  + G L+ A +  ERM  R N  
Sbjct: 321 SHSGLVAEGWECFNSMARD-FGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAA 379

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
            W +++ A  IH +   A +    + D  +DP+      +LY
Sbjct: 380 VWGALLGACRIHLNVDLAEMVARALFD--LDPHNAGRYVILY 419


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/614 (41%), Positives = 361/614 (58%), Gaps = 26/614 (4%)

Query: 129 RAEGLLEG-------MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
           RA  LL G        ++H    +     D  V   L   Y A G++  A  +  +    
Sbjct: 26  RAAALLAGCASASRAAEIHAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRRTPDP 85

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS--NVEPDEMVLSKILSACSRAGNLSYGEA 239
             V ++  I  +   GL    L L  EM +S   + P    LS  L AC   G L+ G A
Sbjct: 86  TAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPAC---GCLAVGRA 142

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS-TAMVSGYSRAG 298
           +H + +   ++ + ++ + L+ MYA  G    A+ LFD +     VVS TAM+S Y++ G
Sbjct: 143 LHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMG 202

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
           Q++DAR +FD +  KDL+CW+AM+ GY ++  P EAL+LF +M   G++PD+V+++  +S
Sbjct: 203 QLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALS 262

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGG-------DLRVNNAIIDMYAKCGSLESAREVFERM 411
           A A LG  +  + +H ++   A GG       + RV  A++DMY KCGSLE A  VF  +
Sbjct: 263 AVAQLGTAESGRWLHSFV---ANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDL 319

Query: 412 RR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
                R+V++W +MIN +A+HG +R AL  F +++ + + P  +TFIGVL ACSH+GLVD
Sbjct: 320 GGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVD 379

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           EGR +FA+M  EY I PK EHYGCMVDL GRA  + EA +LV++M   P+  +W SL+ A
Sbjct: 380 EGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGA 439

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           CR+H  + L +  A  L+     + G  VLLSN+YA   +W++VG +R  M+  G+ KE 
Sbjct: 440 CRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEP 499

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
            CS +E+   V EF+  DRSH ++ +IY KL EV S  +  G+VP     L DL+D  K 
Sbjct: 500 GCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAAKE 559

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
             +  HSEKLAL +GLIS+   + I+IVKNLR C DCH  +KLVS+   R+IV RDR RF
Sbjct: 560 RALAVHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRF 619

Query: 709 HHYKDGVCSCKDYW 722
           HH+ DG CSC DYW
Sbjct: 620 HHFVDGSCSCGDYW 633



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 130/356 (36%), Gaps = 76/356 (21%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F  +P       N  +   +   RP  AL++F +ML  G+  D  S    L A+A+
Sbjct: 207 ARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQ 266

Query: 130 AEGLLEGMQVHGL----GTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY---RD 182
                 G  +H      G +     +  V T LV MY  CG + +A  +F  +     RD
Sbjct: 267 LGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRD 326

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +V W+ MI+GY  +G   E L  F +++   + P ++    +L+ACS           H 
Sbjct: 327 VVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACS-----------HS 375

Query: 243 FIIDNNVALDAHLQS--TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
            ++D   AL A ++    ++    + GC                     MV    RAG+V
Sbjct: 376 GLVDEGRALFAAMEEEYGIVPKVEHYGC---------------------MVDLLGRAGRV 414

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
           E+A                                  F+ +Q    KPD     S++ AC
Sbjct: 415 EEA----------------------------------FDLVQSMKAKPDAAMWASLLGAC 440

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
                L   QR+  Y+  N    +      + +MYA  G       V   MR   V
Sbjct: 441 RLHKNLALGQRVADYLVGNGL-ANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGV 495


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/702 (36%), Positives = 391/702 (55%), Gaps = 45/702 (6%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83
           SL H  Q H+Q++  +++H S  ++   LLL +         S+++ L +F+  P P + 
Sbjct: 112 SLKHATQIHSQLVT-TNNHASLANINTLLLLYA------KCGSIHHTLLLFNTYPHPSTN 164

Query: 84  VSN--KFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG 141
           V      I  +S S++P  AL  F +M   G+  + F+F  IL A A A  L EG Q+H 
Sbjct: 165 VVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHA 224

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201
           L  K  F +DPFV T L+ MY  CG +L A  +FD+M +R++V W+ MI G+ +N L+  
Sbjct: 225 LIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGR 284

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
            + +F E+   ++ PD++ +S +LSAC+    L +G+ VH  I+   +    +++++L+ 
Sbjct: 285 AIGVFREVL--SLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVD 342

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
           MY  C       GLF                        EDA  +F    ++D++ W+ M
Sbjct: 343 MYCKC-------GLF------------------------EDATKLFCGGGDRDVVTWNVM 371

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF 381
           I G     + ++A   F  M   G++PD+ +  S+  A A +  L Q   IH ++ K   
Sbjct: 372 IMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGH 431

Query: 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNK 441
             + R++++++ MY KCGS+  A +VF   +  NV+ WT+MI  F  HG A  A+  F +
Sbjct: 432 VKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEE 491

Query: 442 MKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501
           M +E + P  +TF+ VL ACSH G +D+G + F SM N +NI P  EHY CMVDL GR  
Sbjct: 492 MLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVG 551

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSN 561
            L EA   +E+MPF P+ ++WG+L+ AC  H  +E+    A++L +L+PD+ G  +LLSN
Sbjct: 552 RLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSN 611

Query: 562 IYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNE 621
           IY +    ++  E+R+ M   G+ KE  CS I++ N  + F   DRSH +T +IY  L +
Sbjct: 612 IYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQK 671

Query: 622 VISELKPAGYVPDIHSALVDLEDEEKREVILW-HSEKLALCYGLISSKKDSCIRIVKNLR 680
           +   +K  GYV +   A   +E  E++   LW HSEKLAL +GL+     S +RI KNLR
Sbjct: 672 LKELIKRRGYVAETQFATNSVEGSEEQS--LWCHSEKLALAFGLLVLPPGSPVRIKKNLR 729

Query: 681 VCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            C DCH  +K  S+++ REI++RD  RFH + +G CSC DYW
Sbjct: 730 TCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 4/199 (2%)

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-- 413
           +++  A L  L  A +IH  +        L   N ++ +YAKCGS+     +F       
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPS 162

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
            NV++WT++IN  +       AL FFN+M+   I PN  TF  +L AC+HA L+ EG++I
Sbjct: 163 TNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQI 222

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            A +     +   +     ++D++ +   +  A  + + MP   N+V W S++     + 
Sbjct: 223 HALIHKHCFLNDPFVATA-LLDMYAKCGSMLLAENVFDEMPHR-NLVSWNSMIVGFVKNK 280

Query: 534 EIELAEFAAKQLLQLDPDH 552
               A    +++L L PD 
Sbjct: 281 LYGRAIGVFREVLSLGPDQ 299


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/600 (38%), Positives = 372/600 (62%), Gaps = 1/600 (0%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           I+  + R++ + + + +H    + G   DPF+   L+     C  I  A  +F      +
Sbjct: 52  IISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPN 111

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +  ++ +IDG+  +G + + + L+  M   ++ PD  +++ IL AC     L  G  VH 
Sbjct: 112 VYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHS 171

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
             +   ++ +  ++  ++ +Y  CG +  A+ +F++ + +++V ST M+S YS  G VE+
Sbjct: 172 RALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEE-MPEDVVASTVMISSYSDQGLVEE 230

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           A  +F ++  KD +CW+AMI G+  N     AL+ F  MQ   ++P++ T++ V+SAC+ 
Sbjct: 231 AGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQ 290

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           LG L+  + +H Y+ K     +L V NA+I+MY++CGS++ A+ VF+ M+ R+VI++ +M
Sbjct: 291 LGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTM 350

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I+  +++G +R A+  F  M    + P  VTF+GVL ACSH GLVD G +IF SMT +Y 
Sbjct: 351 ISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYG 410

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           + P+ EHYGCMVDL GR   L EA +L+ TM   P+ ++ G+L++AC++H  +EL E  A
Sbjct: 411 VEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVA 470

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           K L        G  VLLS++YA   +W++  ++R  MKE G+ KE  CS IE+NNE++EF
Sbjct: 471 KVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEF 530

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
           L  D  H + ++IYEKL E+   L+  GY P+    L D+ED EK   +  HSE+LA+CY
Sbjct: 531 LLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICY 590

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           GLIS++  + IR++KNLRVC DCH+ IKL++K+  R++V+RDR RFH++++G CSC DYW
Sbjct: 591 GLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 203/443 (45%), Gaps = 74/443 (16%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMKQT---HAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           S P    +L     IS      H+ Q    HAQ+++   + HSQ+  ++  LL S S   
Sbjct: 39  SNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIR---NGHSQDPFMVFELLRSCS--- 92

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
               ++ YA  IF     P   +    I     S     A++++ +ML++ +  D +   
Sbjct: 93  -KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMA 151

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM--- 178
            ILKA      L EG +VH    KLG  S+  V+  ++ +YG CG++ DAR +F++M   
Sbjct: 152 SILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPED 211

Query: 179 ---------SY------------------RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
                    SY                  +D V W+ MIDG+ +N   +  L  F  M+ 
Sbjct: 212 VVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQG 271

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
            NV P+E  +  +LSACS+ G L  G  VH ++    + L+  + + LI MY+ CG +D 
Sbjct: 272 ENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDE 331

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
           A+ +FD++  ++++    M+SG S  G+                                
Sbjct: 332 AQTVFDEMKDRDVITYNTMISGLSMNGK-------------------------------S 360

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN-- 389
           ++A++LF  M    ++P  VT + V++AC+H G++D   +I   + ++ +G + ++ +  
Sbjct: 361 RQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRD-YGVEPQIEHYG 419

Query: 390 AIIDMYAKCGSLESAREVFERMR 412
            ++D+  + G LE A ++   M+
Sbjct: 420 CMVDLLGRVGRLEEAYDLIRTMK 442



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 124/288 (43%), Gaps = 11/288 (3%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++FS++    +      I     +     AL+ F  M  E +  + F+   +L A ++
Sbjct: 231 AGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQ 290

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G  VH    K     + FV   L+ MY  CG I +A+ +FD+M  RD++ ++ M
Sbjct: 291 LGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTM 350

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV-HEFIIDNN 248
           I G   NG   + + LF  M    + P  +    +L+ACS  G + +G  + H    D  
Sbjct: 351 ISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYG 410

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLF-------DKVLLKNLVVSTAMVSGYSRAGQVE 301
           V         ++ +    G ++ A  L        D ++L  L+ +  M        QV 
Sbjct: 411 VEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQV- 469

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
            A+++ D+  + D   +  +   YA +   +EA ++  +M+  GM+ +
Sbjct: 470 -AKVLEDRG-QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKE 515


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 247/631 (39%), Positives = 361/631 (57%), Gaps = 38/631 (6%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAI--ARAEGLLEGMQVHGLGTKLGFGSDPFVQT 156
           K A ++F +    GL  D FS   IL     A  + L  G QVHG+  K G  SD  V  
Sbjct: 266 KEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVAN 325

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
            LV MY   G    AR +F+ M + D++ W+ MI    Q+ L +E +NLF ++    ++P
Sbjct: 326 SLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKP 385

Query: 217 DEMVLSKIL-----SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
           D   L+ I       AC     L  G+ +H   I      D H+ S ++ MY  CG  DM
Sbjct: 386 DHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCG--DM 443

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
                                         +A ++F+ +   D + W++MISG  +N + 
Sbjct: 444 V-----------------------------NAGIVFNYISAPDDVAWTSMISGCVDNGNE 474

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
            +AL++++ M+   + PD+ T  ++I A + +  L+Q +++H  + K     D  V  ++
Sbjct: 475 DQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSL 534

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           +DMYAKCG++E A  +F++M  RN+  W +M+   A HG+A  A+  F  MK   I+P+ 
Sbjct: 535 VDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDR 594

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
           V+FIG+L ACSHAGL  E  E   SM N+Y I P+ EHY C+VD  GRA L++EA +++E
Sbjct: 595 VSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIE 654

Query: 512 TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
           TMPF  +  I  +L+ ACR+ G++E  +  A +L  L+P    A VLLSNIYA   RW D
Sbjct: 655 TMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDD 714

Query: 572 VGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY 631
           V + RK MK + + K+   S I++ N ++ F+  DRSH Q D IY+K+ E++  ++  GY
Sbjct: 715 VTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGY 774

Query: 632 VPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKL 691
           VPD    L+D+EDEEK   + +HSEKLA+ YGLIS+   + IR++KNLRVC DCHN IK 
Sbjct: 775 VPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKY 834

Query: 692 VSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +SKV+ REIV+RD  RFHH++DGVCSC DYW
Sbjct: 835 ISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 179/639 (28%), Positives = 289/639 (45%), Gaps = 97/639 (15%)

Query: 17  TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
           TAIS+  +L   K THA+I+    S  + +  L   LLT +S       SL  A  +F  
Sbjct: 86  TAIST-HNLLLGKCTHARIVV---SGSAGDHFLSNNLLTMYS----KCGSLSSARQVFDT 137

Query: 77  IPAPPSRVSNKFIRAISWS-----HRPKHALKVFLKMLNEGL-TIDRFSFPPILKAIARA 130
            P       N  + A + S        +  L +F ++L   L +  R +  P+LK    +
Sbjct: 138 TPERDLVTWNAILGAYAASVDSNDGNAQEGLHLF-RLLRASLGSTTRMTLAPVLKLCLNS 196

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
             L     VHG   K+G   D FV   LV +Y  CG++ DARL+FD M  RD+V W++M+
Sbjct: 197 GCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMML 256

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG--NLSYGEAVHEFIIDNN 248
            GY Q GL  E   LF E   S + PDE  +  IL+ C  AG  +L  G+ VH   + + 
Sbjct: 257 KGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSG 316

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           +  D  + ++L+ MY+  GC                                  AR +F+
Sbjct: 317 LDSDVSVANSLVNMYSKMGCAYF-------------------------------AREVFN 345

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI-----SACAHL 363
            M   DLI W++MIS  A+++  +E++ LF ++   G+KPD  T+ S+       AC  L
Sbjct: 346 DMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCL 405

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
            +LDQ ++IH +  K  F  DL VN+ I+DMY KCG + +A  VF  +   + ++WTSMI
Sbjct: 406 VLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMI 465

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
           +    +G+   AL  +++M+   + P+  TF  ++ A S    +++GR++ A++     +
Sbjct: 466 SGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCV 525

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
              +     +VD++ +   + +A  L + M    N+ +W +++     HG  E A     
Sbjct: 526 SDPFVGTS-LVDMYAKCGNIEDAYRLFKKMN-VRNIALWNAMLVGLAQHGNAEEAV---- 579

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER--------ACSRIEM 595
                                          L KSMK  GI  +R        ACS   +
Sbjct: 580 ------------------------------NLFKSMKSHGIEPDRVSFIGILSACSHAGL 609

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
            +E YE+L +  +    +   E  + ++  L  AG V +
Sbjct: 610 TSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQE 648



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/423 (26%), Positives = 192/423 (45%), Gaps = 45/423 (10%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +L+       LL G   H      G   D F+   L+ MY  CG +  AR +FD    RD
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 183 IVPWSVMIDGYF-----QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           +V W+ ++  Y       +G   E L+LF  ++ S      M L+ +L  C  +G L   
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 202

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
           E VH + I   +  D  +   L+ +Y+ CG M  A+ LFD +  +++V+   M+ GY + 
Sbjct: 203 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 262

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           G            +EK                   EA +LF+E    G++PD+ ++  ++
Sbjct: 263 G------------LEK-------------------EAFQLFSEFHRSGLRPDEFSVQLIL 291

Query: 358 SACAHLGV--LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           + C   G   L+  +++H    K+    D+ V N++++MY+K G    AREVF  M+  +
Sbjct: 292 NGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLD 351

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-----GVTFIGVLYACSHAGLVDEG 470
           +ISW SMI++ A       ++  F  +  E + P+      +T      AC    L+D+G
Sbjct: 352 LISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQG 411

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
           ++I A           + + G ++D++ +   +  A  +V     AP+ V W S+++ C 
Sbjct: 412 KQIHAHAIKAGFDSDLHVNSG-ILDMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGCV 469

Query: 531 VHG 533
            +G
Sbjct: 470 DNG 472



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 138/301 (45%), Gaps = 14/301 (4%)

Query: 12  TLPTSTAISSCSSLTHM---KQTHAQILKLSH-SHHSQNSLLLKLLLTSFSLPTTTPSSL 67
           ++  +TA  +C  L  +   KQ HA  +K    S    NS +L + +            +
Sbjct: 392 SITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKC--------GDM 443

Query: 68  YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
             A  +F+ I AP        I     +     AL+++ +M    +  D ++F  ++KA 
Sbjct: 444 VNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKAS 503

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
           +    L +G Q+H    KL   SDPFV T LV MY  CG I DA  +F KM+ R+I  W+
Sbjct: 504 SCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWN 563

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIID 246
            M+ G  Q+G  +E +NLF+ MK   +EPD +    ILSACS AG  S   E +H    D
Sbjct: 564 AMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPND 623

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARL 305
             +  +    S L+      G +  A  + + +  K +  ++ A++      G VE  + 
Sbjct: 624 YGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKR 683

Query: 306 I 306
           +
Sbjct: 684 V 684


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/634 (39%), Positives = 367/634 (57%), Gaps = 42/634 (6%)

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           P+ A++ FL M+  G   D+F+   +  A A  E L  G Q+H    + G   D  V+  
Sbjct: 250 PREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECS 307

Query: 158 LVGMYGAC---GKILDARLMFDKMSYRDIVPWSVMIDGYFQN-GLFDEVLNLFEEM-KMS 212
           LV MY  C   G + D R +FD+M    ++ W+ +I GY +N  L  E +NLF EM    
Sbjct: 308 LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQG 367

Query: 213 NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
           +VEP+    S    AC   GNLS          D  V      Q+               
Sbjct: 368 HVEPNHFTFSSAFKAC---GNLS----------DPRVGKQVLGQA--------------- 399

Query: 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
              F + L  N  V+ +++S + ++ ++EDA+  F+ + EK+L+ ++  + G   N + +
Sbjct: 400 ---FKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFE 456

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
           +A KL +E+    +     T  S++S  A++G + + ++IH  + K     +  V NA+I
Sbjct: 457 QAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALI 516

Query: 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
            MY+KCGS+++A  VF  M  RNVISWTSMI  FA HG A   L  FN+M +E + PN V
Sbjct: 517 SMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEV 576

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
           T++ +L ACSH GLV EG   F SM  ++ I PK EHY CMVDL  RA LL +A E + T
Sbjct: 577 TYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINT 636

Query: 513 MPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572
           MPF  +V++W + + ACRVH   EL + AA+++L+LDP+   A + LSNIYA   +W++ 
Sbjct: 637 MPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEES 696

Query: 573 GELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYV 632
            E+R+ MKER ++KE  CS IE+ +++++F   D +H    QIY++L+ +I+E+K  GYV
Sbjct: 697 TEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYV 756

Query: 633 PD----IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
           PD    +H    + ++ EK  ++  HSEK+A+ +GLIS+ K   +R+ KNLRVC DCHN 
Sbjct: 757 PDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNA 816

Query: 689 IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +K +S V  REIV+RD  RFHH+KDG CSC DYW
Sbjct: 817 MKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 208/458 (45%), Gaps = 51/458 (11%)

Query: 92  ISWSH---------RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGL 142
           +SWS          R   A+KVF++ L  GL  + + +  +++A + ++ +  G    G 
Sbjct: 132 VSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGF 191

Query: 143 GTKLG-FGSDPFVQTGLVGMY-GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
             K G F SD  V   L+ M+        +A  +FDKMS  ++V W++MI    Q G   
Sbjct: 192 LMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPR 251

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
           E +  F +M +S  E D+  LS + SAC+   NLS G+ +H + I + +  D  ++ +L+
Sbjct: 252 EAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLV 309

Query: 261 TMYANC---GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
            MYA C   G +D  + +FD+                               M +  ++ 
Sbjct: 310 DMYAKCSADGSVDDCRKVFDR-------------------------------MEDHSVMS 338

Query: 318 WSAMISGYAEN-NHPQEALKLFNEMQVCG-MKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           W+A+I+GY +N N   EA+ LF+EM   G ++P+  T  S   AC +L      +++   
Sbjct: 339 WTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQ 398

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
             K     +  V N++I M+ K   +E A+  FE +  +N++S+ + ++    + +   A
Sbjct: 399 AFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQA 458

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
               +++ +  +  +  TF  +L   ++ G + +G +I + +  +  +         ++ 
Sbjct: 459 FKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVV-KLGLSCNQPVCNALIS 517

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           ++ +   +  A  +   M    NV+ W S++     HG
Sbjct: 518 MYSKCGSIDTASRVFNFME-NRNVISWTSMITGFAKHG 554



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 120/491 (24%), Positives = 222/491 (45%), Gaps = 52/491 (10%)

Query: 52  LLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR--VSNKFIRAISWSHRPKHALKVFLKML 109
           + + SFS P+         L I SQ P+  +R  V+++ I     +   + A+     M 
Sbjct: 1   MAMISFSFPSPAK------LPIKSQ-PSVSNRINVADRLILRHLNAGDLRGAVSALDLMA 53

Query: 110 NEGLT-IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI 168
            +G+  +D  +F  +LK+  RA     G  VH    +     D  +   L+ +Y   G  
Sbjct: 54  RDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDS 113

Query: 169 LDARLMFDKM---SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
             A  +F+ M     RD+V WS M+  Y  NG   + + +F E     + P++   + ++
Sbjct: 114 AKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVI 173

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
            ACS +  +  G     F++        H +S +      C  +DM              
Sbjct: 174 RACSNSDFVGVGRVTLGFLMKT-----GHFESDVCV---GCSLIDM-------------- 211

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
                V G       E+A  +FD+M E +++ W+ MI+   +   P+EA++ F +M + G
Sbjct: 212 ----FVKG---ENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSG 264

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC---GSLE 402
            + DK T+ SV SACA L  L   +++H +  ++    D  V  +++DMYAKC   GS++
Sbjct: 265 FESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVD 322

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGD-ARNALIFFNKMKDES-IDPNGVTFIGVLYA 460
             R+VF+RM   +V+SWT++I  +  + + A  A+  F++M  +  ++PN  TF     A
Sbjct: 323 DCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKA 382

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           C +      G+++         +         ++ +F +++ + +A    E++    N+V
Sbjct: 383 CGNLSDPRVGKQVLGQAFKR-GLASNSSVANSVISMFVKSDRMEDAQRAFESLS-EKNLV 440

Query: 521 IWGSLM-AACR 530
            + + +   CR
Sbjct: 441 SYNTFLDGTCR 451



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 134/292 (45%), Gaps = 29/292 (9%)

Query: 345 GMKP-DKVTMLSVISACAH-----LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           G++P D VT  S++ +C       LG L  A+ I   I+ ++      + N++I +Y+K 
Sbjct: 56  GIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSV-----LYNSLISLYSKS 110

Query: 399 GSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           G    A +VFE MRR   R+V+SW++M+  +  +G   +A+  F +  +  + PN   + 
Sbjct: 111 GDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYT 170

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC-MVDLFGRA-NLLREALELVETM 513
            V+ ACS++  V  GR     +    +        GC ++D+F +  N    A ++ + M
Sbjct: 171 AVIRACSNSDFVGVGRVTLGFLMKTGHFESDV-CVGCSLIDMFVKGENSFENAYKVFDKM 229

Query: 514 PFAPNVVIWGSLMAACRVHG-EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572
               NVV W  ++  C   G   E   F    +L      +     LS++++     +++
Sbjct: 230 S-ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLS---GFESDKFTLSSVFSACAELENL 285

Query: 573 G---ELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNE 621
               +L       G++ +  CS ++M    Y   +AD S     ++++++ +
Sbjct: 286 SLGKQLHSWAIRSGLVDDVECSLVDM----YAKCSADGSVDDCRKVFDRMED 333


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/555 (41%), Positives = 355/555 (63%), Gaps = 4/555 (0%)

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
           RL+F ++   +   W+ +I  Y   G   + L+ +  M+   V P     S + SAC+  
Sbjct: 63  RLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAV 122

Query: 232 GNLSYGEAVH-EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
            + + G  +H + ++    + D ++ + +I MY  CG +  A+ +FD++  ++++  T +
Sbjct: 123 RHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGL 182

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           +  Y+R G +  AR +FD +  KD++ W+AM++GYA+N  P +AL++F  ++  G++ D+
Sbjct: 183 IVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDE 242

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFG-GD-LRVNNAIIDMYAKCGSLESAREVF 408
           VT++ VISACA LG    A  I    + + FG GD + V +A+IDMY+KCG++E A +VF
Sbjct: 243 VTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVF 302

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
           + MR RNV S++SMI  FAIHG AR A+  F  M +  + PN VTF+GVL ACSHAGLVD
Sbjct: 303 KGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVD 362

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           +G+++FASM   Y + P  E Y CM DL  RA  L +AL+LVETMP   +  +WG+L+ A
Sbjct: 363 QGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGA 422

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
             VHG  ++AE A+K+L +L+PD+ G  +LLSN YA   RW DV ++RK ++E+ + K  
Sbjct: 423 SHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNP 482

Query: 589 ACSRIEMNNE-VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEK 647
             S +E  N  +++F+  D SH + ++I ++LN+++  LK  GY P++ S    + D EK
Sbjct: 483 GWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREK 542

Query: 648 REVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTR 707
           R +++ HSEKLAL +GL+S+   S I+I+KNLR+CEDCH  +   SKV  R+IV+RD TR
Sbjct: 543 RLLLMAHSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTR 602

Query: 708 FHHYKDGVCSCKDYW 722
           FHH+ +G CSC ++W
Sbjct: 603 FHHFLNGACSCSNFW 617



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 197/453 (43%), Gaps = 79/453 (17%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           +  CSSL   K+ HAQI   +    S   +L KLL    +LP     S  Y   +FSQ+ 
Sbjct: 15  LERCSSLNQAKEVHAQIYIKNLQQSSY--VLTKLLRLVTALPHVPLHS--YPRLLFSQLH 70

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P        IRA +       AL  +  M    ++   F+F  +  A A       G Q
Sbjct: 71  TPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQ 130

Query: 139 VHGLGTKL-GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI-------------- 183
           +H     L GF SD +V   ++ MY  CG +  AR++FD+M  RD+              
Sbjct: 131 LHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIG 190

Query: 184 -----------------VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS 226
                            V W+ M+ GY QN +  + L +F  ++   VE DE+ L  ++S
Sbjct: 191 DMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVIS 250

Query: 227 ACSRAGNLSYGEAVHE------FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           AC++ G   Y   + +      F + +NV +     S LI MY+ CG ++ A  +F  + 
Sbjct: 251 ACAQLGASKYANWIRDIAESSGFGVGDNVLVG----SALIDMYSKCGNVEEAYDVFKGMR 306

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            +N+   ++M+ G++  G+                                + A+KLF +
Sbjct: 307 ERNVFSYSSMIVGFAIHGRA-------------------------------RAAIKLFYD 335

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK-NAFGGDLRVNNAIIDMYAKCG 399
           M   G+KP+ VT + V++AC+H G++DQ Q++   ++K         +   + D+ ++ G
Sbjct: 336 MLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAG 395

Query: 400 SLESAREVFERM-RRRNVISWTSMINAFAIHGD 431
            LE A ++ E M    +   W +++ A  +HG+
Sbjct: 396 YLEKALQLVETMPMESDGAVWGALLGASHVHGN 428


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/646 (38%), Positives = 376/646 (58%), Gaps = 42/646 (6%)

Query: 79  APPSRVSNKFIRAI-SWS-HRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
           A PS + N+F      W  HR   A++    M   G+  D  ++  ++K  +    + EG
Sbjct: 18  ADPSPLVNEFANFCHQWDLHR---AMRAMDAMERHGVFADAITYSELIKCCSARGAVQEG 74

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
            +VH      G+    FV   L+ MY     + +A  +FD+M  R++V W+ MI  Y  N
Sbjct: 75  KRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAY-SN 133

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
            L D+ L     M    V P+    S +L AC    NL     +H  II   +  D  ++
Sbjct: 134 KLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNL---RQLHCGIIKTGLESDVFVR 190

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           S LI +                               YS+   +++A  +FD+M  +DL+
Sbjct: 191 SALIDV-------------------------------YSKWSDLDNALGVFDEMPTRDLV 219

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            W+++I G+A+N+   EAL LF  M+  G   D+ T+ SV+ AC  L +L+  +++H+++
Sbjct: 220 VWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHV 279

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            K  F  DL +NNA+IDMY KCGSLE A   F RM  ++VISW++M+   A +G +R AL
Sbjct: 280 LK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQAL 337

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             F  MK+    PN +T +GVL+ACSHAGLV++G   F SM   + + P  EHYGC++DL
Sbjct: 338 ELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDL 397

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
            GRA  L EA++L+  M   P+ V W +L+ ACRVH  ++LA +AAK++++L+P+  G  
Sbjct: 398 LGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTY 457

Query: 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           +LLSNIYA  +RW+DV E+RK+M  RGI K   CS IE++ +++ F+  D SH + ++I 
Sbjct: 458 ILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIV 517

Query: 617 EKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIV 676
           ++LN++I  +   GYVPD +  L DLE E+K + + +HSEKLA+ +GL++  ++  +RI 
Sbjct: 518 QRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIR 577

Query: 677 KNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KNLR+C DCH F K+VS++  R IVIRD  R+HH++DGVCSC DYW
Sbjct: 578 KNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 106/232 (45%), Gaps = 9/232 (3%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +  +P     S+ + +C  L +++Q H  I+K   +    +  +   L+  +S      S
Sbjct: 149 EGVRPNMFTYSSVLRACDGLPNLRQLHCGIIK---TGLESDVFVRSALIDVYS----KWS 201

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
            L  AL +F ++P     V N  I   + +     AL +F +M   G   D+ +   +L+
Sbjct: 202 DLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLR 261

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A      L  G QVH     L F  D  +   L+ MY  CG + DA   F +M  +D++ 
Sbjct: 262 ACTGLALLELGRQVH--VHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVIS 319

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           WS M+ G  QNG   + L LFE MK S   P+ + +  +L ACS AG +  G
Sbjct: 320 WSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKG 371



 Score = 42.4 bits (98), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 414 RNVISWTSMINAFAI---HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           R V   + ++N FA      D   A+   + M+   +  + +T+  ++  CS  G V EG
Sbjct: 15  RYVADPSPLVNEFANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEG 74

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           + +   +  +    PK      +++++ + NLL EA +L + MP   NVV W ++++A
Sbjct: 75  KRVHEHIFCK-GYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMP-ERNVVSWTTMISA 130


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/606 (39%), Positives = 366/606 (60%), Gaps = 39/606 (6%)

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQT--GLVGMYGACGKILDARLMFDKMS 179
           PIL  I++   L E MQ+     K       FV               +  AR +F+ MS
Sbjct: 32  PIL-LISKCNSLRELMQIQAYAIKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMS 90

Query: 180 YRDIVPWSVMIDGY--FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
             DIV ++ M  GY  F N L  EV +LF E+    + PD      +L AC+ A  L  G
Sbjct: 91  EPDIVIFNSMARGYSRFTNPL--EVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEG 148

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
             +H                          C+ M  GL D     N+ V   +++ Y+  
Sbjct: 149 RQLH--------------------------CLSMKLGLDD-----NVYVCPTLINMYTEC 177

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
             V+ AR +FD++VE  ++C++AMI+GYA  N P EAL LF EMQ   +KP+++T+LSV+
Sbjct: 178 EDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVL 237

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
           S+CA LG LD  + IH Y  K++F   ++VN A+IDM+AKCGSL+ A  +FE+MR ++  
Sbjct: 238 SSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQ 297

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
           +W++MI A+A HG A  +++ F +M+ E++ P+ +TF+G+L ACSH G V+EGR+ F+ M
Sbjct: 298 AWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQM 357

Query: 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537
            +++ I P  +HYG MVDL  RA  L +A E ++ +P +P  ++W  L+AAC  H  ++L
Sbjct: 358 VSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDL 417

Query: 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNN 597
           AE  ++++ +LD  H G  V+LSN+YA++K+W+ V  LRK MK+R  +K   CS IE+NN
Sbjct: 418 AEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNN 477

Query: 598 EVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL-VDLEDEEKREVILWHSE 656
            V+EF + D     T +++  L+E++ ELK +GYVPD    +  ++ D+EK   + +HSE
Sbjct: 478 VVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSE 537

Query: 657 KLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVC 716
           KLA+ +GL+++   + IR+VKNLRVC DCHN  KL+S ++ R++V+RD  RFHH++DG C
Sbjct: 538 KLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKC 597

Query: 717 SCKDYW 722
           SC D+W
Sbjct: 598 SCGDFW 603



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 212/413 (51%), Gaps = 40/413 (9%)

Query: 3   TLSQPTKPLTLPTSTAI---SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL 59
           T ++ +K  T+ T   I   S C+SL  + Q  A  +K   SH    S + KL+  +F  
Sbjct: 17  TFTKHSKIDTVNTQNPILLISKCNSLRELMQIQAYAIK---SHIEDVSFVAKLI--NFCT 71

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
            + T SS+ YA  +F  +  P   + N   R  S    P     +F+++L +G+  D ++
Sbjct: 72  ESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYT 131

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           FP +LKA A A+ L EG Q+H L  KLG   + +V   L+ MY  C  +  AR +FD++ 
Sbjct: 132 FPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIV 191

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
              +V ++ MI GY +    +E L+LF EM+   ++P+E+ L  +LS+C+  G+L  G+ 
Sbjct: 192 EPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKW 251

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H++   ++      + + LI M+A CG +D A  +F+K+  K+    +AM+  Y+  G+
Sbjct: 252 IHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGK 311

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
            E + L+F++M               +EN                 ++PD++T L +++A
Sbjct: 312 AEKSMLMFERM--------------RSEN-----------------VQPDEITFLGLLNA 340

Query: 360 CAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           C+H G +++ ++     + K      ++   +++D+ ++ G+LE A E  +++
Sbjct: 341 CSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKL 393


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/635 (35%), Positives = 362/635 (57%), Gaps = 32/635 (5%)

Query: 89   IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148
            I A+  +  P+ AL +F +M N+ +  +R +   IL A A    L  G  +H    K   
Sbjct: 402  IAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADM 461

Query: 149  GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
             SD    T LV MY  CG    A   F++MS RDIV W+ +I+GY Q G     +++F +
Sbjct: 462  DSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYK 521

Query: 209  MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
            +++S + PD   +  ++ AC+   +L  G  +H  I+      D H+++ LI MYA CG 
Sbjct: 522  LRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGS 581

Query: 269  MDMAKGLFDKV-LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
            +  A+ LF+K    K+ V    +++ Y                                +
Sbjct: 582  LPSAEFLFNKTDFTKDEVTWNVIIAAY-------------------------------MQ 610

Query: 328  NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
            N H +EA+  F++M++    P+ VT +SV+ A A+L    +    H  I +  F  +  V
Sbjct: 611  NGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLV 670

Query: 388  NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
             N++IDMYAKCG L+ + ++F  M  ++ +SW +M++ +A+HG    A+  F+ M++  +
Sbjct: 671  GNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQV 730

Query: 448  DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
              + V+F+ VL AC HAGLV+EGR+IF SM+++Y+I P  EHY CMVDL GRA L  E L
Sbjct: 731  QIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETL 790

Query: 508  ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
              ++ MP  P+  +WG+L+ +CR+H  ++L E A   L++L+P +    V+LS+IYA+  
Sbjct: 791  GFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSG 850

Query: 568  RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627
            RW D G+ R  M + G+ K   CS +E+ N+V+ F   D+SH Q + ++   N ++ +++
Sbjct: 851  RWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKME 910

Query: 628  PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHN 687
              GYVPD    L ++E+E+K   +  HSE+LA+ + L+++   S I+IVKNLRVC DCH 
Sbjct: 911  KIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHT 970

Query: 688  FIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              K +SK+  R I++RD TRFHH++DG+CSC DYW
Sbjct: 971  TTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 177/630 (28%), Positives = 288/630 (45%), Gaps = 86/630 (13%)

Query: 3   TLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT 62
           +LS  T    L     +SSC  L  + Q HAQI+     HH   + L+ L          
Sbjct: 23  SLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLY--------- 73

Query: 63  TPSSLYY----ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
              SL++    A S+F   P P   + N  IRA + S +   AL+++  M+ +GL  D++
Sbjct: 74  ---SLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKY 130

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +F  +LKA   A  L EG+  HG   + G   D F+  GLV MY   G +  AR +FDKM
Sbjct: 131 TFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKM 190

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
             RD+V W+ MI G  Q+    E ++ F  M++  VEP  + L  +     +  N+    
Sbjct: 191 PKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCR 250

Query: 239 AVHEFII-----------------------------DNNVALDAHLQSTLITMYANCGCM 269
           ++H ++                              D  V  D     T++  YA+ GC 
Sbjct: 251 SIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCF 310

Query: 270 DMAKGLFDKVLLKN---------------------------------------LVVSTAM 290
                LFDK+ L N                                       ++V+T +
Sbjct: 311 VEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPL 370

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           +  Y++ G+ E A+ +F  +  +DL+ WSA+I+   +  +P+EAL LF EMQ   MKP++
Sbjct: 371 MVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNR 430

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           VT++S++ ACA L +L   + IH +  K     DL    A++ MYAKCG   +A   F R
Sbjct: 431 VTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNR 490

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M  R++++W S+IN +A  GD  NA+  F K++  +I+P+  T +GV+ AC+    +D+G
Sbjct: 491 MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG 550

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
             I   +  +            ++D++ +   L  A  L     F  + V W  ++AA  
Sbjct: 551 TCIHGLIV-KLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYM 609

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLS 560
            +G  + A  +  Q ++L+  H  ++  +S
Sbjct: 610 QNGHAKEAISSFHQ-MRLENFHPNSVTFVS 638



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 133/462 (28%), Positives = 227/462 (49%), Gaps = 36/462 (7%)

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM 161
           L++F KM    + I++ S      A A    L +G ++HG   +    SD  V T L+ M
Sbjct: 314 LELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVM 373

Query: 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221
           Y  CG+   A+ +F  +  RD+V WS +I    Q G  +E L+LF+EM+   ++P+ + L
Sbjct: 374 YAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTL 433

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
             IL AC+    L  G+++H F +  ++  D    + L++MYA CG    A   F+++  
Sbjct: 434 MSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSS 493

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           +++V   ++++GY++ G                                P  A+ +F ++
Sbjct: 494 RDIVTWNSLINGYAQIGD-------------------------------PYNAIDMFYKL 522

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
           ++  + PD  TM+ V+ ACA L  LDQ   IH  I K  F  D  V NA+IDMYAKCGSL
Sbjct: 523 RLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSL 582

Query: 402 ESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
            SA  +F +    ++ ++W  +I A+  +G A+ A+  F++M+ E+  PN VTF+ VL A
Sbjct: 583 PSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPA 642

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
            ++     EG    A +  +            ++D++ +   L  + +L   M    + V
Sbjct: 643 AAYLAAFREGMAFHACII-QMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDH-KDTV 700

Query: 521 IWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALVLLS 560
            W ++++   VHG  +  +A F+  Q  Q+  D    + +LS
Sbjct: 701 SWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLS 742



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 183/397 (46%), Gaps = 35/397 (8%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           AL+ F+++ +      N  I   +    P +A+ +F K+    +  D  +   ++ A A 
Sbjct: 484 ALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACAL 543

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY-RDIVPWSV 188
              L +G  +HGL  KLGF SD  V+  L+ MY  CG +  A  +F+K  + +D V W+V
Sbjct: 544 LNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNV 603

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I  Y QNG   E ++ F +M++ N  P+ +    +L A +       G A H  II   
Sbjct: 604 IIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMG 663

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              +  + ++LI MYA CG +D ++ LF+++  K+ V   AM+SGY+  G          
Sbjct: 664 FLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHG---------- 713

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
                                H   A+ LF+ MQ   ++ D V+ +SV+SAC H G++++
Sbjct: 714 ---------------------HGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEE 752

Query: 369 AQRI-HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAF 426
            ++I H   DK     DL     ++D+  + G  +      + M    +   W +++ + 
Sbjct: 753 GRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSC 812

Query: 427 AIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACS 462
            +H + +   +  + + K E  +P     +  +YA S
Sbjct: 813 RMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQS 849



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 152/341 (44%), Gaps = 22/341 (6%)

Query: 19  ISSCSSLTHMKQ---THAQILKLSHSH--HSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           + +C+ L  + Q    H  I+KL      H +N+L+  +     SLP+        A  +
Sbjct: 538 VPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALI-DMYAKCGSLPS--------AEFL 588

Query: 74  FSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           F++       V+ N  I A   +   K A+  F +M  E    +  +F  +L A A    
Sbjct: 589 FNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAA 648

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
             EGM  H    ++GF S+  V   L+ MY  CG++  +  +F++M ++D V W+ M+ G
Sbjct: 649 FREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSG 708

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN-NVAL 251
           Y  +G  D  + LF  M+ S V+ D +    +LSAC  AG +  G  +   + D  ++  
Sbjct: 709 YAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKP 768

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLL--KNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
           D    + ++ +    G  D   G F KV+    +  V  A++        V+   +  D 
Sbjct: 769 DLEHYACMVDLLGRAGLFDETLG-FIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDH 827

Query: 310 MVE---KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           +V+   ++   +  + S YA++    +A K  ++M   G+K
Sbjct: 828 LVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLK 868


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/721 (35%), Positives = 396/721 (54%), Gaps = 66/721 (9%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV 84
           L  +  +HA     SH +    S +  L+LT   LP       + + S+F      PS  
Sbjct: 163 LARVAPSHAS----SHVYDDVPSCIRYLILT---LPIIIHQGCFNSKSMFLTRHVFPSNS 215

Query: 85  SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
                R +S      H  +  L+M   G  +   ++  IL          EG +VH    
Sbjct: 216 -----RTLSTFTTHIHLQQPLLQMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMI 270

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           K  +    F++T L+ +Y  C  + DA  +FD+M  R++V W+ MI  Y Q G   + LN
Sbjct: 271 KTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALN 330

Query: 205 LF--------------EEMKMSN-------VEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           LF              +++K+SN        EP+E   + +L++C+ +     G  +H  
Sbjct: 331 LFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSL 390

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           II  N      + S+L+ MYA                               + G++ +A
Sbjct: 391 IIKLNYEDHVFVGSSLLDMYA-------------------------------KDGKIHEA 419

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
           R +F+ + E+D++  +A+ISGYA+    +EAL+LF  +Q  GMK + VT   V++A + L
Sbjct: 420 RTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGL 479

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
             LD  +++H ++ ++     + + N++IDMY+KCG+L  +R +F+ M  R VISW +M+
Sbjct: 480 AALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAML 539

Query: 424 NAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFASMTN-EY 481
             ++ HG+ R  L  F  M++E+ + P+ VT + VL  CSH GL D+G  IF  M++ + 
Sbjct: 540 VGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKI 599

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
            + PK EHYGC+VDL GR+  + EA E ++ MPF P   IWGSL+ ACRVH  +++ EFA
Sbjct: 600 EVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFA 659

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
            +QLL+++P + G  V+LSN+YA   RW+DV  LR  M ++ + KE   S IE++  ++ 
Sbjct: 660 GQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHT 719

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           F  +DRSH + ++I  K+ E+ +  K  GYVPD+   L D+++E+K +++L HSEKLAL 
Sbjct: 720 FHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKILLGHSEKLALS 779

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           +GLI+S     IR++KNLR+C DCHNF K +SKVY RE+ +RD+ RFH    G CSC+DY
Sbjct: 780 FGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRIVGGKCSCEDY 839

Query: 722 W 722
           W
Sbjct: 840 W 840



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 19/240 (7%)

Query: 4   LSQPTKP--LTLPT----STAISSCSS---LTHMKQTHAQILKLSHSHHS-QNSLLLKLL 53
           LS P +P   T P     +T ++SC+S       +Q H+ I+KL++  H    S LL + 
Sbjct: 351 LSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMY 410

Query: 54  LTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGL 113
                        ++ A ++F  +P          I   +     + AL++F ++  EG+
Sbjct: 411 --------AKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGM 462

Query: 114 TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
             +  ++  +L A++    L  G QVH    +    S   +Q  L+ MY  CG +  +R 
Sbjct: 463 KSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRR 522

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK-MSNVEPDEMVLSKILSACSRAG 232
           +FD M  R ++ W+ M+ GY ++G   EVL LF  M+  + V+PD + +  +LS CS  G
Sbjct: 523 IFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGG 582


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/658 (37%), Positives = 391/658 (59%), Gaps = 19/658 (2%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           +L  A ++F+Q+P       N  +   + +   + A K+F +ML      +  S+  +L 
Sbjct: 137 NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----VKNEISWNGLLS 192

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A  +   + +  ++    +K+ +  +      L+G Y    ++ DAR +FD+M  RD + 
Sbjct: 193 AYVQNGRIEDARRL--FDSKMDW--EIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKIS 248

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W++MI GY QNGL  E   LFEE+ + +V       + ++S   + G L     + E + 
Sbjct: 249 WNIMITGYAQNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFEEMP 304

Query: 246 DNN-VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           + N V+ +A     +I  Y     ++ A+ LFD++  +N      MV+GY++ G ++ A+
Sbjct: 305 EKNEVSWNA-----MIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAK 359

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
           ++FD+M ++D I W+AMISGYA++   +EAL LF +M+  G   ++  +   +S+CA + 
Sbjct: 360 ILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIA 419

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L+  +++H  + K  F       NA++ MY KCGS+E A +VFE +  ++++SW +MI 
Sbjct: 420 ALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIA 479

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
            +A HG  + AL  F  MK  +I P+ VT +GVL ACSH GLVD+G E F SM   Y I 
Sbjct: 480 GYARHGFGKEALALFESMK-MTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGIT 538

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
              +HY CM+DL GRA  L EAL L+++MPF P+   WG+L+ A R+HG+ EL E AA++
Sbjct: 539 ANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEK 598

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           + +++PD+ G  VLLSN+YA   RW++V E+R  M+++G+ K    S +E+ N+ + F  
Sbjct: 599 VFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTV 658

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            D SH + ++IY  L E+  ELK  G+V      L D+E+EEK  ++ +HSEKLA+ +G+
Sbjct: 659 GDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGI 718

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +S      IR++KNLRVCEDCHN IK +SK+  R+I++RD  RFHH+ +G CSC DYW
Sbjct: 719 LSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 195/406 (48%), Gaps = 43/406 (10%)

Query: 156 TGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
             ++  Y +  K   AR +F+KM  RD++ W+VM+ GY +NG       LF +M     E
Sbjct: 95  NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMP----E 150

Query: 216 PDEMVLSKILSACSRAGNLSYGEAV-HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
            D +  + +LS  ++ G +     +  + ++ N ++ +      L++ Y   G ++ A+ 
Sbjct: 151 KDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG-----LLSAYVQNGRIEDARR 205

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
           LFD  +   +V    ++ GY R  +++DAR +FD+M  +D I W+ MI+GYA+N    EA
Sbjct: 206 LFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEA 265

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI-DKNAFGGDLRVN----- 388
            +LF E+ +     D     +++S     G+LD+A RI   + +KN    +  +      
Sbjct: 266 RRLFEELPI----RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQS 321

Query: 389 ---------------------NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
                                N ++  YA+CG+++ A+ +F+ M +R+ ISW +MI+ +A
Sbjct: 322 QQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYA 381

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
             G +  AL  F KMK +    N       L +C+    ++ G+++   +  +      Y
Sbjct: 382 QSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLV-KAGFQTGY 440

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
                ++ ++G+   + EA ++ E +    ++V W +++A    HG
Sbjct: 441 IAGNALLAMYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARHG 485



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 186/409 (45%), Gaps = 62/409 (15%)

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           DIV W+  I  Y + G  +  L++F  M+                   R   ++Y   + 
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMR-------------------RRSTVTYNAMIS 99

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
            ++ +N                      D A+ +F+K+  ++L+    M+SGY + G + 
Sbjct: 100 GYLSNNK--------------------FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLS 139

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
            AR +F+QM EKD++ W+AM+SG+A+N   +EA K+F++M V     ++++   ++SA  
Sbjct: 140 AARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLV----KNEISWNGLLSAYV 195

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
             G ++ A+R+      +    ++   N ++  Y +   L+ AR +F+RM  R+ ISW  
Sbjct: 196 QNGRIEDARRLF----DSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNI 251

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI  +A +G    A   F ++    +      +  ++      G++DE   IF  M    
Sbjct: 252 MITGYAQNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFEEM---- 303

Query: 482 NIPPKYE-HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
             P K E  +  M+  + ++  + +A EL + MP + N   W +++      G I+ A+ 
Sbjct: 304 --PEKNEVSWNAMIAGYVQSQQIEKARELFDQMP-SRNTSSWNTMVTGYAQCGNIDQAKI 360

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
              ++ Q D     A++   + YA+  + ++   L   MK  G +  R+
Sbjct: 361 LFDEMPQRDCISWAAMI---SGYAQSGQSEEALHLFIKMKRDGGILNRS 406



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 106/218 (48%), Gaps = 21/218 (9%)

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           +V+ D++ W+  IS Y      + AL +FN M+    +   VT  ++IS        D A
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMR----RRSTVTYNAMISGYLSNNKFDCA 110

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           +++   +       DL   N ++  Y K G+L +AR +F +M  ++V+SW +M++ FA +
Sbjct: 111 RKVFEKMPDR----DLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G    A   F++M    +  N +++ G+L A    G +++ R +F S  +   +      
Sbjct: 167 GFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVS----- 217

Query: 490 YGCMVDLFGRANLLREALELVETMP----FAPNVVIWG 523
           + C++  + R   L +A  L + MP     + N++I G
Sbjct: 218 WNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITG 255



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 19/209 (9%)

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
           D      D+   N  I  Y + G  ESA  VF  MRRR+ +++ +MI+ +  +     A 
Sbjct: 52  DSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCAR 111

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             F KM D  +    V   G +      G +   R +F  M  +  +      +  M+  
Sbjct: 112 KVFEKMPDRDLISWNVMLSGYV----KNGNLSAARALFNQMPEKDVVS-----WNAMLSG 162

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
           F +   + EA ++ + M    N + W  L++A   +G IE     A++L   D   D  +
Sbjct: 163 FAQNGFVEEARKIFDQM-LVKNEISWNGLLSAYVQNGRIE----DARRL--FDSKMDWEI 215

Query: 557 V---LLSNIYAKDKRWQDVGELRKSMKER 582
           V    L   Y + KR  D   L   M  R
Sbjct: 216 VSWNCLMGGYVRKKRLDDARSLFDRMPVR 244


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/589 (41%), Positives = 356/589 (60%), Gaps = 4/589 (0%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVG--MYGACGKILD-ARLMFDKMSYRDIVPWSVMIDGYF 194
           Q+H    K G   D +  T  +   +       L  A+++FD     D   W++MI G+ 
Sbjct: 61  QIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFS 120

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
            +   +  L L++ M   +   +      +L ACS    L     +H  I       D +
Sbjct: 121 CSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVY 180

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
             ++LI  YA  G   +A  LFD++   + V   +++ GY++AG+++ A  +F +MVEK+
Sbjct: 181 AVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKN 240

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
            I W+ MISGY +    +EAL+LF+EMQ   ++PD V++ + +SACA LG L+Q + IH 
Sbjct: 241 AISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHS 300

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           Y+ K     D  +   +IDMYAKCG +  A EVF+ ++R++V +WT++I+ +A HG  R 
Sbjct: 301 YLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGRE 360

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           A+  F +M+   I PN +TF  VL ACS+ GLV+EG+ IF +M  +YN+ P  EHYGC+V
Sbjct: 361 AISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVV 420

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DL  RA LL EA   ++ MP  PN VIWG+L+ ACR+H  IEL E   + L+ +DP H G
Sbjct: 421 DLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGG 480

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
             V  +NI+A  K+W    E R+ MKE+G+ K   CS I +    +EFL  DRSH + ++
Sbjct: 481 RYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEK 540

Query: 615 IYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL-WHSEKLALCYGLISSKKDSCI 673
           I  K   +  +L+  GYVP++   L+DL D+++RE I+  HSEKLA+ YGLI +K  + I
Sbjct: 541 IQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITYGLIKTKPGTTI 600

Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           RI+KNLRVC+DCH   KL+SK+Y R+IV+RDRTRFHH++DG CSC DYW
Sbjct: 601 RIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 211/445 (47%), Gaps = 68/445 (15%)

Query: 20  SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA 79
           + CS    +KQ HA++LK   +   Q+S  +   L S  + +T+   L YA  +F     
Sbjct: 51  TRCSKQEELKQIHARMLK---TGLIQDSYAITKFL-SCCISSTSSDFLPYAQIVFDGFDR 106

Query: 80  PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQV 139
           P + + N  IR  S S  P+ +L ++ +ML      + ++FP +LKA +    L E  Q+
Sbjct: 107 PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQI 166

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD----------------------- 176
           H   TKLG+ +D +    L+  Y A G    A L+FD                       
Sbjct: 167 HAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKM 226

Query: 177 --------KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228
                   KM  ++ + W+ MI GY Q G+  E L LF EM+ S+VEPD + L+  LSAC
Sbjct: 227 DIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSAC 286

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
           ++ G L  G+ +H ++    + +D+ L   LI MYA CG M  A  +F  +  K++   T
Sbjct: 287 AQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWT 346

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
           A++SGY+  G                               H +EA+  F EMQ  G+KP
Sbjct: 347 ALISGYAYHG-------------------------------HGREAISKFMEMQKMGIKP 375

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIIDMYAKCGSLESAREV 407
           + +T  +V++AC++ G++++ + I   ++++      +     ++D+ ++ G L+ A+  
Sbjct: 376 NVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRF 435

Query: 408 FERMR-RRNVISWTSMINAFAIHGD 431
            + M  + N + W +++ A  IH +
Sbjct: 436 IQEMPLKPNAVIWGALLKACRIHKN 460



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 145/333 (43%), Gaps = 57/333 (17%)

Query: 1   MSTLSQPTKPLTLPTS-TAISSCSSLTHMKQTHAQILKLSHSH--HSQNSLLLKLLLT-S 56
           M   S P    T P+   A S+ S+L    Q HAQI KL + +  ++ NSL+     T +
Sbjct: 135 MLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGN 194

Query: 57  FSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIR----------------------AISW 94
           F L          A  +F +IP P +   N  I+                      AISW
Sbjct: 195 FKL----------AHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISW 244

Query: 95  SH---------RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           +            K AL++F +M N  +  D  S    L A A+   L +G  +H   TK
Sbjct: 245 TTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTK 304

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
                D  +   L+ MY  CG + +A  +F  +  + +  W+ +I GY  +G   E ++ 
Sbjct: 305 TRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISK 364

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL------ 259
           F EM+   ++P+ +  + +L+ACS  G +  G+     +I  N+  D +L+ T+      
Sbjct: 365 FMEMQKMGIKPNVITFTTVLTACSYTGLVEEGK-----LIFYNMERDYNLKPTIEHYGCV 419

Query: 260 ITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMV 291
           + + +  G +D AK    ++ LK N V+  A++
Sbjct: 420 VDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALL 452


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/603 (39%), Positives = 351/603 (58%), Gaps = 35/603 (5%)

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV---GMYGACGKILDARLMFDKMSY 180
           L  + +   L E  Q+     K    SD  V T  +    +      +  A  +FD++  
Sbjct: 24  LSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQ 83

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
            DIV ++ M  GY +         LF ++  S + PD+     +L AC+    L  G  +
Sbjct: 84  PDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQL 143

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H   I   ++ + ++  TLI MY  C  MD                              
Sbjct: 144 HCLAIKLGLSENVYVCPTLINMYTACNEMDC----------------------------- 174

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
             AR +FD++ E  ++ ++AMI+GYA  + P EAL LF E+Q   +KP  VTMLSV+S+C
Sbjct: 175 --ARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSC 232

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           A LG LD  + +H Y+ KN F   ++V+ A+IDMYAKCGSL+ A  VFE M  R+  +W+
Sbjct: 233 ALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWS 292

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +MI A+AIHG    A+  F +M+    +P+ +TF+G+LYACSH GLV+EG E F  M ++
Sbjct: 293 AMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDK 352

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
           Y + P  +HYGCMVDL GRA  L EA E +  +P  P  ++W +L++AC  HG +EL + 
Sbjct: 353 YGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKR 412

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
             +Q+ +LD  H G  ++LSN+ A+  RW+DV  +RK M ERG++K   CS +E+NN V+
Sbjct: 413 VIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVH 472

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL-VDLEDEEKREVILWHSEKLA 659
           EF + D  H  + ++++ L+E++ ELK  GYVP+       D+EDEEK   + +HSEKLA
Sbjct: 473 EFFSGDGVHSVSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLA 532

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           + +GL+++   + IR+VKNLRVC DCH+  KL+S ++ R+I++RD  RFHH+KDG CSC+
Sbjct: 533 ITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCE 592

Query: 720 DYW 722
           DYW
Sbjct: 593 DYW 595



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 136/476 (28%), Positives = 232/476 (48%), Gaps = 48/476 (10%)

Query: 1   MSTLSQPTKPLTLPTSTA--------ISSCSSLTHMKQTHAQILKLSHSH-HSQNSLLLK 51
           M+  + P  P+  P S +        +  C+SL  +KQ  A  +K   +H HS  S+L K
Sbjct: 1   MARPAPPVTPMCPPNSNSNTTHPLSLLPKCTSLRELKQLQAFAIK---THLHSDLSVLTK 57

Query: 52  LLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE 111
            +      PTTT  S+ +A  +F QIP P   + N   R  + +  P  A  +F ++L  
Sbjct: 58  FINFCSLNPTTT--SMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFS 115

Query: 112 GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA 171
           GL  D ++FP +LKA A  + L EG Q+H L  KLG   + +V   L+ MY AC ++  A
Sbjct: 116 GLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCA 175

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
           R +FDK+    +V ++ MI GY +    +E L+LF E++  N++P ++ +  +LS+C+  
Sbjct: 176 RRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALL 235

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
           G L  G+ +HE++  N       + + LI MYA CG +D A  +F+ + +++    +AM 
Sbjct: 236 GALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAM- 294

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
                                         I  YA + H  +A+ LF EM+  G +PD++
Sbjct: 295 ------------------------------IMAYAIHGHGLKAVSLFKEMRKAGTEPDEI 324

Query: 352 TMLSVISACAHLGVLDQA-QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           T L ++ AC+H G++++  +  +   DK      ++    ++D+  + G LE A E    
Sbjct: 325 TFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVG 384

Query: 411 MR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
           +  R   I W ++++A   HG+         ++  E  D +G  +I +   C+ AG
Sbjct: 385 LPIRPTPILWRTLLSACGSHGNVELGKRVIEQIF-ELDDSHGGDYIILSNLCARAG 439


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/608 (38%), Positives = 354/608 (58%), Gaps = 36/608 (5%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D F    L+  Y   G I + +  FD+M +RD V ++  I G+  N    E L LF+ M+
Sbjct: 88  DIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQ 147

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
               EP E  +  IL+A ++  +L YG+ +H  II  N   +  + + L  MYA CG ++
Sbjct: 148 REGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIE 207

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQ------------------------------- 299
            A+ LFD +  KNLV    M+SGY++ GQ                               
Sbjct: 208 QARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYC 267

Query: 300 ----VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
               V++AR +F +  EKD++CW+AM+ GYA+N   ++AL LFNEM +  ++PD  T+ S
Sbjct: 268 QCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSS 327

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           V+S+CA L  L   Q +H          +L V++A+IDMY+KCG ++ AR VF  M  RN
Sbjct: 328 VVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRN 387

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V+SW +MI   A +G  ++AL  F  M  +   P+ VTFIG+L AC H   +++G+E F 
Sbjct: 388 VVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFD 447

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           S+TN++ + P  +HY CMV+L GR   + +A+ L++ M   P+ +IW +L++ C   G+I
Sbjct: 448 SITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDI 507

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
             AE AA+ L +LDP      ++LSN+YA   RW+DV  +R  MK + + K    S IE+
Sbjct: 508 VNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEI 567

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
           +NEV+ F + DR+H +++ IYEKLN +I +L+  G+ P+ +  L D+ ++EK + I +HS
Sbjct: 568 DNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHS 627

Query: 656 EKLALCYGLISSKKD-SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDG 714
           EKLAL +GLI      S IRI+KN+R+C DCH F+K  S++  R+I++RD  RFHH+  G
Sbjct: 628 EKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTG 687

Query: 715 VCSCKDYW 722
            CSC D W
Sbjct: 688 KCSCNDNW 695



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 199/401 (49%), Gaps = 37/401 (9%)

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
           + F ++P   S   N  I   S +  P+ +L++F +M  EG     ++   IL A A+  
Sbjct: 110 ATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLS 169

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
            L  G Q+HG      F  + F+   L  MY  CG+I  AR +FD ++ +++V W++MI 
Sbjct: 170 DLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMIS 229

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA---CSR------------------ 230
           GY +NG  ++ + L  +M++S   PD++ +S I++A   C R                  
Sbjct: 230 GYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVC 289

Query: 231 -----AGNLSYGEAVHEFIIDNNVAL-----DAHLQSTLITMYANCGCMDMAKGLFDKVL 280
                 G    G      ++ N + L     D++  S++++  A    +   + +  K +
Sbjct: 290 WTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSI 349

Query: 281 L----KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           L     NL+VS+A++  YS+ G ++DAR +F+ M  ++++ W+AMI G A+N H ++AL+
Sbjct: 350 LAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALE 409

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI-DKNAFGGDLRVNNAIIDMY 395
           LF  M     KPD VT + ++SAC H   ++Q Q     I +++     L     ++++ 
Sbjct: 410 LFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLL 469

Query: 396 AKCGSLESAREVFERMRRR-NVISWTSMINAFAIHGDARNA 435
            + G +E A  + + M    + + W+++++  +  GD  NA
Sbjct: 470 GRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNA 510



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 138/224 (61%)

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           D+ L + L+ +YA  G +  A+ LFDK+L +++    A++S Y+++G +++ +  FD+M 
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
            +D + ++  I+G++ N+ PQE+L+LF  MQ  G +P + T++S+++A A L  L   ++
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQ 176

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           IH  I    F G++ + NA+ DMYAKCG +E AR +F+ + ++N++SW  MI+ +A +G 
Sbjct: 177 IHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQ 236

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
               +   ++M+     P+ VT   ++ A    G VDE R +F+
Sbjct: 237 PEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFS 280


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 249/685 (36%), Positives = 370/685 (54%), Gaps = 77/685 (11%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNE---GLTIDRFSFPPILKAIARAEGLLEGMQVHGL 142
           N  + A     + + AL++  +M N     L  D  +   IL A A    L  G QVHG 
Sbjct: 200 NSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGF 259

Query: 143 GTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD-- 200
             + G   D FV   LV MY  C K+ +A  +F+ +  +D+V W+ M+ GY Q G FD  
Sbjct: 260 SVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSA 319

Query: 201 ---------------------------------EVLNLFEEMKMSNVEPDEMVLSKILSA 227
                                            E L++F +M++  +EP+ + L+ +LS 
Sbjct: 320 LSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSG 379

Query: 228 CSRAGNLSYGEAVHEFIIDNNVAL-------DAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           C+  G L YG+  H ++I N + L       D  + + LI MYA C    +A+ +FD + 
Sbjct: 380 CASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIE 439

Query: 281 L--KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
              KN+V  T M+ GY++ G+  DA  +F Q+ +                          
Sbjct: 440 GKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFK-------------------------- 473

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD-LRVNNAIIDMYAK 397
              Q   +KP+  T+   + ACA LG L   +++H Y  +N    + L V N +IDMY+K
Sbjct: 474 ---QKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSK 530

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
            G +++AR VF+ M+ RNV+SWTS++  + +HG    AL  F++M+      +G+TF+ V
Sbjct: 531 SGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVV 590

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           LYACSH+G+VD+G   F  M   + I P  EHY CMVDL GRA  L EA+EL++ M   P
Sbjct: 591 LYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEP 650

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
             V+W +L++A R+H  IEL E+AA +L +L  ++DG+  LLSN+YA  +RW+DV  +R 
Sbjct: 651 TAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRS 710

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            MK  GI K   CS I+       F   DRSH +++QIY  L ++I  +K  GYVP    
Sbjct: 711 LMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSF 770

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
           AL D++DEEK +++  HSEKLA+ YG++++     IRI KNLR+C DCH+ +  +S +  
Sbjct: 771 ALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMIID 830

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
            EIV+RD +RFHH+K G CSC+ YW
Sbjct: 831 HEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 184/582 (31%), Positives = 285/582 (48%), Gaps = 39/582 (6%)

Query: 8   TKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSL 67
           T P T+P  + +  C +L + K  H QI       H    +    +        +     
Sbjct: 26  TSPPTIPLISLLRQCKTLINAKLAHQQIFV-----HGFTEMFSYAVGAYIECGASAE--- 77

Query: 68  YYALSIFSQIPAPPSRVS--NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
             A+S+  ++    S V   N  IR           L  + +M   G   D ++FP +LK
Sbjct: 78  --AVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLK 135

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR---D 182
           A      L  G  VH +    G GS+ F+   +V MYG CG + DA  MFD++  R   D
Sbjct: 136 ACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIED 195

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-----VEPDEMVLSKILSACSRAGNLSYG 237
           IV W+ ++  Y Q G     L +    +M N     + PD + L  IL AC+    L +G
Sbjct: 196 IVSWNSILAAYVQGGQSRTALRI--AFRMGNHYSLKLRPDAITLVNILPACASVFALQHG 253

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
           + VH F + N +  D  + + L++MYA C  M+ A  +F+ +  K++V   AMV+GYS+ 
Sbjct: 254 KQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQI 313

Query: 298 GQVEDARLIFDQMVEKDL----ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           G  + A  +F  M E+D+    I WSA+I+GYA+  H  EAL +F +MQ+ G++P+ VT+
Sbjct: 314 GSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTL 373

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFG-------GDLRVNNAIIDMYAKCGSLESARE 406
            S++S CA +G L   ++ H Y+ KN           DL V N +IDMYAKC S   AR 
Sbjct: 374 ASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARS 433

Query: 407 VFERM--RRRNVISWTSMINAFAIHGDARNALIFFNKM--KDESIDPNGVTFIGVLYACS 462
           +F+ +  + +NV++WT MI  +A HG+A +AL  F ++  +  S+ PN  T    L AC+
Sbjct: 434 IFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACA 493

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
             G +  GR++ A      N         C++D++ ++  +  A  + + M    NVV W
Sbjct: 494 RLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKL-RNVVSW 552

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
            SLM    +HG  E A     Q+ +L    DG +  L  +YA
Sbjct: 553 TSLMTGYGMHGRGEEALHLFDQMQKLGFAVDG-ITFLVVLYA 593



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 140/318 (44%), Gaps = 18/318 (5%)

Query: 9   KPLTLPTSTAISSCSS---LTHMKQTHA----QILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           +P  +  ++ +S C+S   L + KQTHA     IL L+ +    + L+L  L+  ++   
Sbjct: 367 EPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYA--- 423

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSH--RPKHALKVFLKMLNEGLTI--DR 117
               S   A SIF  I      V    +    ++       ALK+F ++  +  ++  + 
Sbjct: 424 -KCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNA 482

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDP-FVQTGLVGMYGACGKILDARLMFD 176
           F+    L A AR   L  G Q+H    +    S+  +V   L+ MY   G I  AR +FD
Sbjct: 483 FTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFD 542

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
            M  R++V W+ ++ GY  +G  +E L+LF++M+      D +    +L ACS +G +  
Sbjct: 543 NMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQ 602

Query: 237 GEA-VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGY 294
           G    H+ +    +   A   + ++ +    G ++ A  L   + ++   VV  A++S  
Sbjct: 603 GMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSAS 662

Query: 295 SRAGQVEDARLIFDQMVE 312
                +E       ++ E
Sbjct: 663 RIHANIELGEYAASKLTE 680


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/605 (39%), Positives = 362/605 (59%), Gaps = 39/605 (6%)

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM--YGACGKILD-ARLMFDKMSY 180
           L  +++   L E  Q+     K    SD  V T L+           +D A  +FD++  
Sbjct: 33  LSLLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILD 92

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           +DI+ +++M  GY ++       +LF E+  S + PD+   S +L AC+ +  L  G  +
Sbjct: 93  KDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGL 152

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H F +   +  + ++  TLI MYA C  M+ A+G                          
Sbjct: 153 HCFAVKLGLNHNIYICPTLINMYAECNDMNAARG-------------------------- 186

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
                +FD+M +  ++ ++A+I+GYA ++ P EAL LF E+Q   ++P  VTMLSVI +C
Sbjct: 187 -----VFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSC 241

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           A LG LD  + IH Y+ K  F   ++VN A+IDM+AKCGSL  A  +FE MR R+  +W+
Sbjct: 242 ALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWS 301

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +MI AFA HGD   A+  F +MK E + P+ +TF+G+LYACSHAGLV++GR  F SM+  
Sbjct: 302 AMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKT 361

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
           Y I P  +HYGCMVDL GRA  L EA   V+ +      ++W +L++AC  HG +E+A+ 
Sbjct: 362 YGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKR 421

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
             +++ +LD  H G  V+LSN+YA+  RW+DV  LRK MK+RG++K   CS +E+NN V+
Sbjct: 422 VIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 481

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV---DLEDEEKREVILWHSEK 657
           EF + D  H  + ++   L+E++ E+K  GYVPD  ++LV   D+E+E K  V+ +HSEK
Sbjct: 482 EFFSGDGVHCVSVELRRALDELMKEIKLVGYVPD--TSLVYHADMEEEGKELVLRYHSEK 539

Query: 658 LALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCS 717
           LA+ +GL+++   + IR+ KNLR+C DCHN  KL+S ++ R+IVIRD  RFH ++DG CS
Sbjct: 540 LAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCS 599

Query: 718 CKDYW 722
           C D+W
Sbjct: 600 CGDFW 604



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 218/444 (49%), Gaps = 47/444 (10%)

Query: 3   TLSQPTKPLT--------LPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLL 54
           TL++P+   +        L   + +S C+SL  +KQ  A  +K +    S  S+L KL+ 
Sbjct: 12  TLTKPSSAFSKNEFVINQLHPLSLLSKCTSLNELKQIQAYTIKTNL--QSDISVLTKLI- 68

Query: 55  TSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT 114
            +F     T S + +A  +F QI      + N   R  + S+ P  A  +F ++L  GL 
Sbjct: 69  -NFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLL 127

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
            D ++F  +LKA A ++ L EGM +H    KLG   + ++   L+ MY  C  +  AR +
Sbjct: 128 PDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGV 187

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           FD+M    IV ++ +I GY ++   +E L+LF E++ SN+EP ++ +  ++ +C+  G L
Sbjct: 188 FDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGAL 247

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             G+ +HE++          + + LI M+A CG                           
Sbjct: 248 DLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCG--------------------------- 280

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
                + DA  IF+ M  +D   WSAMI  +A +    +A+ +F EM+  G++PD++T L
Sbjct: 281 ----SLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFL 336

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERMR 412
            ++ AC+H G+++Q  R + Y     +G    ++    ++D+  + G L+ A    +++ 
Sbjct: 337 GLLYACSHAGLVEQG-RGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLE 395

Query: 413 -RRNVISWTSMINAFAIHGDARNA 435
            +   I W ++++A + HG+   A
Sbjct: 396 IKATPILWRTLLSACSTHGNVEMA 419


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/553 (41%), Positives = 347/553 (62%), Gaps = 4/553 (0%)

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +F++++Y +   ++ +I GY       E    +  M+   V P     + +  AC    +
Sbjct: 102 IFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMD 161

Query: 234 LSYGEAVH-EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
           +  G  +H + I+      D H+ +++I MY  CG ++  + +FD++  ++++  T ++S
Sbjct: 162 VGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELIS 221

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
            Y ++G +E A  +FD +  KD++ W+ M+SG+A+N  P+EA+  F +MQ  G++ D++T
Sbjct: 222 AYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEIT 281

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGG--DLRVNNAIIDMYAKCGSLESAREVFER 410
           ++ VISACA LG    A  I    +K+ FGG   + V +A+IDMY+KCGS+  A  VF+ 
Sbjct: 282 LIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQG 341

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M+ RNV S++SMI  FA+HG   +A+  F++M    I PN VTFIGVL ACSHAG+V++G
Sbjct: 342 MKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQG 401

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
            +IF  M   Y I P  +HY CMVDL GRA  L+EA ELV+TMP  P+  +WG+L+ ACR
Sbjct: 402 WQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACR 461

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
           +H   ++A  AA  L +L+P   G  +LL+NIYA   RW DV  +RK M+ RG+ K  A 
Sbjct: 462 IHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAF 521

Query: 591 SRIEMNNE-VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
           S IE     V+EF + D +H ++ +I + L +++  L+  GY P + S   D+ DE+KR 
Sbjct: 522 SWIESEKGMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRR 581

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
           +++ HSEKLAL +GLIS+   S IRIVKNLR+CEDCH+ I   S++  REI++RD  RFH
Sbjct: 582 ILMTHSEKLALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFH 641

Query: 710 HYKDGVCSCKDYW 722
           H+ DG+CSC ++W
Sbjct: 642 HFHDGICSCGNFW 654



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 213/471 (45%), Gaps = 90/471 (19%)

Query: 17  TAISSCSSLTHMKQTHAQIL--KLSHSHHSQNSLLLKLL--LTSFSLPTTTPSSLYYALS 72
           T +  C +LT +KQ HA+IL   L  S +    +L KL+  LT  ++P        Y LS
Sbjct: 51  TTLDGCKNLTQIKQVHARILLNGLDQSCY----VLAKLIRTLTKLNIPVDP-----YPLS 101

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           IF+Q+  P   + N  IR      R K + + +  M  EG+    F+F  + KA      
Sbjct: 102 IFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMD 161

Query: 133 LLEGMQVHGLGTKLG-FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI-------- 183
           +  G Q+HG    +G FG D  V   ++ MY  CG +   R +FD+M  RD+        
Sbjct: 162 VGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELIS 221

Query: 184 -----------------------VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
                                  V W+VM+ G+ QN    E +  FE+M+   VE DE+ 
Sbjct: 222 AYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEIT 281

Query: 221 LSKILSACSRAGNLSYGEAVH------EFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
           L  ++SAC++ G   Y + +       EF   ++V +     S LI MY+ CG +  A  
Sbjct: 282 LIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVG----SALIDMYSKCGSVGDAYR 337

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
           +F  +  +N+   ++M+ G++  G+V DA  +FD+MV+ ++                   
Sbjct: 338 VFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEI------------------- 378

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AII 392
                       KP++VT + V++AC+H G+++Q  +I   ++K  +G     ++   ++
Sbjct: 379 ------------KPNRVTFIGVLTACSHAGMVEQGWQIFELMEK-CYGIKPSADHYTCMV 425

Query: 393 DMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKM 442
           D+  + G L+ A E+ + M    +   W +++ A  IH     A I  N +
Sbjct: 426 DLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHL 476


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/518 (42%), Positives = 337/518 (65%)

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           LF  M + ++ P+    + +   CS       G   H  +I N+  +D  +++++I  Y+
Sbjct: 79  LFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYS 138

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
            CG ++ A+ +FD+    ++V   +M+ G  R G + +A  +F +M E++ I W+ MISG
Sbjct: 139 VCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISG 198

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           YA+N  P+EAL LF EMQ+   +P+   ++SV+SAC+ LG LD    +H YI K     D
Sbjct: 199 YAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVD 258

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
             ++ A+IDMYAKCGS++ A + F   R+R+V ++T+ I+  A++G +  AL  F +MK 
Sbjct: 259 SILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKG 318

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
           E I P+GV++I VL ACSHAG V++G   FASM++ + I P+ +HY CMVDL GRA LL 
Sbjct: 319 EGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLE 378

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
           EA + V +MP  P+ VIWG+L+ ACRV+G  E+ +     L++ D +HDG  +LLSNIYA
Sbjct: 379 EAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYA 438

Query: 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVIS 624
           +  + +D  ++RK+M+ R + +   CS IE+   V+EF + DRSH++T++IY    E++ 
Sbjct: 439 ESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKTEEIYLMWEEIVK 498

Query: 625 ELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCED 684
           E+K  GY  +  + + D+E+EEK  VI  HSEKLA+ +G + +K  S +RIVKN+R+C D
Sbjct: 499 EIKKFGYREETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFLYTKSGSTLRIVKNIRICSD 558

Query: 685 CHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           CH  IKLVSKV+ R+I IRDR  FHH+++G+CSCKDYW
Sbjct: 559 CHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 202/451 (44%), Gaps = 85/451 (18%)

Query: 25  LTHMKQTHAQIL--KLSHSHHSQNSLLLKLLLTSFSLPTTTPSS-LYYALSIFSQIPAPP 81
           +   K+ H Q++   L+H   S   ++        S     PS  + YAL +  +   PP
Sbjct: 1   MKQFKEAHTQLIINGLTHPPPSLRPII--------SFSALDPSGDIDYALLLLLRTSTPP 52

Query: 82  SR-VSNKFIRAISWSHRPKHALK---VFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
           +  + N  IR  S + RP   L    +F++M    L  + F+F  + +  +       G 
Sbjct: 53  TVFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGR 112

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID------ 191
           Q HG+  K  F  D FV+  ++  Y  CG++ DAR +FD+ S  D+V W+ MID      
Sbjct: 113 QFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNG 172

Query: 192 -------------------------GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS 226
                                    GY QNG   E L LF EM+M + EP+  +L  +LS
Sbjct: 173 NILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLS 232

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV 286
           ACS+ G L +G  VH +I    V +D+ L + LI MYA CG +D+A   F     +++  
Sbjct: 233 ACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSA 292

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346
            TA +SG +  G  E                               EAL+LF +M+  G+
Sbjct: 293 YTAAISGLAMNGCSE-------------------------------EALQLFEQMKGEGI 321

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYI---DKNAFGGDLRVNNAIIDMYAKCGSLES 403
            PD V+ ++V+ AC+H G +++    H +    D +    +L     ++D+  + G LE 
Sbjct: 322 SPDGVSYIAVLCACSHAGWVEKG--FHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEE 379

Query: 404 AREVFERM--RRRNVISWTSMINAFAIHGDA 432
           A +    M  +  NVI W +++ A  ++G+A
Sbjct: 380 AEKFVASMPIKPDNVI-WGALLGACRVYGNA 409


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/701 (35%), Positives = 392/701 (55%), Gaps = 40/701 (5%)

Query: 22  CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPP 81
           C+ L +    HA I KL H     N+ +   L+ ++++  +  S    A   F  I    
Sbjct: 56  CAELAY--SLHACIYKLGHE---SNAFVGTALIDAYAVCGSVNS----ARQAFDAIACKD 106

Query: 82  SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG 141
                  +   + + R + +L++F +M   G   + F+F  +LKA    E    G  VHG
Sbjct: 107 MVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHG 166

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201
              K  +  D +V  GL+ +Y   G   D   +F++M   D++PWS MI  Y Q+    E
Sbjct: 167 CVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSRE 226

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
            + LF +M+ + V P++   + +L +C+   NL  G+ VH  ++   V LD         
Sbjct: 227 AVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVL--KVGLDG-------- 276

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
                                N+ VS A++  Y++ G+++++  +F ++  ++ + W+ M
Sbjct: 277 ---------------------NVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTM 315

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF 381
           I GY ++    +AL L+  M  C ++  +VT  SV+ ACA L  ++   +IH    K  +
Sbjct: 316 IVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIY 375

Query: 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNK 441
             D+ V NA+IDMYAKCGS+++AR VF+ +  R+ ISW +MI+ +++HG    AL  F  
Sbjct: 376 DKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQM 435

Query: 442 MKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501
           M++    PN +TF+ +L ACS+AGL+D G+  F SM  +Y I P  EHY CMV L GR+ 
Sbjct: 436 MQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSG 495

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSN 561
            L +A++L+E +P  PNV +W +L+ AC +H +++L   +A+Q+LQ+DP  +   VLLSN
Sbjct: 496 HLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSN 555

Query: 562 IYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNE 621
           IYA+ +RW  V  +RK MK +G+ KE   S IE    V+ F   D SH     I   L  
Sbjct: 556 IYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEW 615

Query: 622 VISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRV 681
           +  + + AGYVPD+++ L D+ED+EK+  +  HSE+LAL +GLI +     IRI+KNLR+
Sbjct: 616 LNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSRGHIRILKNLRI 675

Query: 682 CEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           C DCH+ IKL+SK+  R+I+IRD  RFHH++DG+CSC DYW
Sbjct: 676 CTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 128/471 (27%), Positives = 233/471 (49%), Gaps = 39/471 (8%)

Query: 81  PSRVSNKFIRAIS---WSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
           P R +  F+  I     S +    + +F ++  EG  ++ F F  ILK +   E      
Sbjct: 2   PDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAY 61

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
            +H    KLG  S+ FV T L+  Y  CG +  AR  FD ++ +D+V W+ M+  Y +N 
Sbjct: 62  SLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEND 121

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
            F + L LF EM+M    P+    + +L AC      S G++VH  ++     +D     
Sbjct: 122 RFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMD----- 176

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
               +Y   G +D+                      Y++ G   D   +F++M + D+I 
Sbjct: 177 ----LYVGVGLLDL----------------------YTKFGDANDVLRVFEEMPKHDVIP 210

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           WS MIS YA++N  +EA++LF +M+   + P++ T  SV+ +CA +  L   +++H ++ 
Sbjct: 211 WSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVL 270

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           K    G++ V+NA++D+YAKCG L+++ ++F  +  RN ++W +MI  +   GD   AL 
Sbjct: 271 KVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALS 330

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA-SMTNEYNIPPKYEHYGCMVDL 496
            +  M +  +  + VT+  VL AC+    ++ G +I + S+   Y+      +   ++D+
Sbjct: 331 LYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGN--ALIDM 388

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
           + +   ++ A  LV  M    + + W ++++   +HG +  A   A Q++Q
Sbjct: 389 YAKCGSIKNA-RLVFDMLSERDEISWNAMISGYSMHGLVGEA-LKAFQMMQ 437



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 171/374 (45%), Gaps = 41/374 (10%)

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           M  R+ V +  +I GY Q+   DEV++LF                   S   R G     
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLF-------------------SRVHREG----- 36

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL----KNLVVSTAMVSG 293
              HE        L+  + +T++ +  +  C ++A  L   +       N  V TA++  
Sbjct: 37  ---HE--------LNPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDA 85

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           Y+  G V  AR  FD +  KD++ W+ M++ YAEN+  Q++L+LF EM++ G  P+  T 
Sbjct: 86  YAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTF 145

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
             V+ AC  L      + +H  + K  +  DL V   ++D+Y K G       VFE M +
Sbjct: 146 AGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPK 205

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
            +VI W+ MI+ +A    +R A+  F +M+   + PN  TF  VL +C+    +  G+++
Sbjct: 206 HDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQV 265

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
              +  +  +         ++D++ +   L  +++L   +P   N V W +++      G
Sbjct: 266 HCHVL-KVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELP-NRNEVTWNTMIVGYVQSG 323

Query: 534 EIELAEFAAKQLLQ 547
           + + A    K +L+
Sbjct: 324 DGDKALSLYKNMLE 337


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/719 (35%), Positives = 395/719 (54%), Gaps = 54/719 (7%)

Query: 58  SLPTTTPSSLYYALS-------IFSQIP--APPSRVSNKFIRAISWSHRPKHALKVFLKM 108
           ++  TT  + Y AL        IF+  P     S   N  I   + +     AL++F  M
Sbjct: 79  AIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAM 138

Query: 109 LNEGLTIDRFSFPPILKAIARAEGLLEGM-QVHGLGTKLGFGS-DPFVQTGLVGMYG--- 163
             +    D F+F  +L A+    G  +   Q+H    K G G     V   L+ +Y    
Sbjct: 139 RRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRA 198

Query: 164 -----ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN---------------------- 196
                 C  ++ AR +FD+M  RD + W+ MI GY +N                      
Sbjct: 199 SELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWN 258

Query: 197 ---------GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
                    G F E L L  +M+   ++ D++  + I+SAC+  G+   G+ +H +I+ N
Sbjct: 259 AMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKN 318

Query: 248 ----NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
               N +    + + LIT+Y     +D A+ +F  + ++N++   A++SGY  AG++E+A
Sbjct: 319 ELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEA 378

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
           +  F++M  K+L+  + MISG A+N    E LKLF +M++ G +P        ++AC+ L
Sbjct: 379 KSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVL 438

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
           G L+  +++H  +    +   L V NA+I MYAKCG +E+A  VF  M   +++SW SMI
Sbjct: 439 GALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMI 498

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
            A   HG    A+  F++M  E + P+ +TF+ VL ACSHAGLV++GR  F SM   Y I
Sbjct: 499 AALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGI 558

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
            P  +HY  MVDLF RA +   A  ++++MP  P   +W +L+A CR+HG ++L   AA+
Sbjct: 559 TPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAE 618

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
           QL +L P +DG  VLLSNIYA   RW DV ++RK M+++ + KE ACS IE+ N+V+ F+
Sbjct: 619 QLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFM 678

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYG 663
             D  H +   +Y  L ++  E+K  GY+PD    L D+E E+K   +  HSEKLA+ +G
Sbjct: 679 VDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFG 738

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           ++    D+ +R+ KN+R+C DCHN  K +SKV  REI++RDR RFHH+K+G CSC+DYW
Sbjct: 739 IMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 203/430 (47%), Gaps = 49/430 (11%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFD--KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
           D   +T L+  Y A G +   R +F+   +  RD V ++ MI GY  NG     L LF  
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRA 137

Query: 209 MKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVA-LDAHLQSTLITMYAN- 265
           M+  +  PD+   + +LSA     GN      +H  ++   +  + + + + L+++Y   
Sbjct: 138 MRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKR 197

Query: 266 -------CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
                  C  M  A+ LFD++  ++ +  T M++GY R   +  AR +F+ MVE     W
Sbjct: 198 ASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAW 257

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +AMISGY      QEAL L  +M+  G++ D +T  ++ISACA++G     +++H YI K
Sbjct: 258 NAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILK 317

Query: 379 NAFGGD----LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW--------------- 419
           N    +    L V+NA+I +Y K   ++ AR++F  M  RN+I+W               
Sbjct: 318 NELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEE 377

Query: 420 ----------------TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
                           T MI+  A +G     L  F +M+ +  +P    F G L ACS 
Sbjct: 378 AKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSV 437

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
            G ++ GR++ A + +             M+ ++ +  ++  A  +  TMP + ++V W 
Sbjct: 438 LGALENGRQLHAQLVH-LGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVSWN 495

Query: 524 SLMAACRVHG 533
           S++AA   HG
Sbjct: 496 SMIAALGQHG 505



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 168/370 (45%), Gaps = 56/370 (15%)

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
            + S   AVH  +I +      H  + L+ MY     +  A+ LF+++   + +  T ++
Sbjct: 27  ASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLI 86

Query: 292 SGYSRAGQVEDARLIFD--QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
           + Y   G +E  R IF+   +  +D + ++AMI+GYA N     AL+LF  M+    +PD
Sbjct: 87  TAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPD 146

Query: 350 KVTMLSVISACA-HLGVLDQAQRIHLYIDKNAFGG-DLRVNNAIIDMYAK--------CG 399
             T  SV+SA    +G   Q  ++H  + K   G     V NA++ +Y K        C 
Sbjct: 147 DFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCS 206

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGD-----------------ARNALI----- 437
           ++ SAR++F+ M +R+ ++WT+MI  +  + D                 A NA+I     
Sbjct: 207 AMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVH 266

Query: 438 ---------FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS-MTNEYNIPPKY 487
                       KM+   I  + +T+  ++ AC++ G    G+++ A  + NE N  P +
Sbjct: 267 CGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELN--PNH 324

Query: 488 EH----YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA----- 538
                    ++ L+ + N + EA ++   MP   N++ W ++++     G +E A     
Sbjct: 325 SFCLSVSNALITLYCKNNKVDEARKIFYAMP-VRNIITWNAILSGYVNAGRMEEAKSFFE 383

Query: 539 EFAAKQLLQL 548
           E   K LL L
Sbjct: 384 EMPVKNLLTL 393



 Score = 45.8 bits (107), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 105/235 (44%), Gaps = 16/235 (6%)

Query: 9   KPLTLPTSTAISSCS---SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +P     + A+++CS   +L + +Q HAQ++ L +    ++SL +   + S         
Sbjct: 422 EPCDFAFAGALTACSVLGALENGRQLHAQLVHLGY----ESSLSVGNAMISMYAKCGVVE 477

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           +   A S+F  +P+      N  I A+        A+++F +ML EG+  DR +F  +L 
Sbjct: 478 A---AESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLT 534

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQ--TGLVGMYGACGKILDARLMFDKMSYRDI 183
           A + A GL+E  + +       +G  P       +V ++   G    AR++ D M  +  
Sbjct: 535 ACSHA-GLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPG 593

Query: 184 VP-WSVMIDGYFQNGLFDEVLNLFEEM--KMSNVEPDEMVLSKILSACSRAGNLS 235
            P W  ++ G   +G  D  +   E++   M   +   ++LS I +   R  +++
Sbjct: 594 APVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVA 648


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/658 (37%), Positives = 390/658 (59%), Gaps = 19/658 (2%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           +L  A ++F+Q+P       N  +   + +   + A K+F +ML      +  S+  +L 
Sbjct: 137 NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----VKNEISWNGLLS 192

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A  +   + +  ++    +K+ +  +      L+G Y    ++ DAR +FD+M  RD + 
Sbjct: 193 AYVQNGRIEDARRL--FDSKMDW--EIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKIS 248

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W++MI GY QNGL  E   LFEE+ + +V       + ++S   + G L     + E + 
Sbjct: 249 WNIMITGYAQNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFEEMP 304

Query: 246 DNN-VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           + N V+ +A     +I  Y     ++ A+ LFD++  +N      MV+GY++ G ++ A+
Sbjct: 305 EKNEVSWNA-----MIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAK 359

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
           ++FD+M ++D I W+AMISGYA++   +EAL LF +M+  G   ++  +   +S+CA + 
Sbjct: 360 ILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIA 419

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L+  +++H  + K  F       NA++ MY KCGS+E A +VFE +  ++++SW +MI 
Sbjct: 420 ALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIA 479

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
            +A HG  + AL  F  MK  +I P+ VT +GVL ACSH G VD+G E F SM   Y I 
Sbjct: 480 GYARHGFGKEALALFESMK-MTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGIT 538

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
              +HY CM+DL GRA  L EAL L+++MPF P+   WG+L+ A R+HG+ EL E AA++
Sbjct: 539 ANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEK 598

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           + +++PD+ G  VLLSN+YA   RW++V E+R  M+++G+ K    S +E+ N+ + F  
Sbjct: 599 VFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTV 658

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            D SH + ++IY  L E+  ELK  G+V      L D+E+EEK  ++ +HSEKLA+ +G+
Sbjct: 659 GDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGI 718

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +S      IR++KNLRVCEDCHN IK +SK+  R+I++RD  RFHH+ +G CSC DYW
Sbjct: 719 LSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 195/406 (48%), Gaps = 43/406 (10%)

Query: 156 TGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
             ++  Y +  K   AR +F+KM  RD++ W+VM+ GY +NG       LF +M     E
Sbjct: 95  NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMP----E 150

Query: 216 PDEMVLSKILSACSRAGNLSYGEAV-HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
            D +  + +LS  ++ G +     +  + ++ N ++ +      L++ Y   G ++ A+ 
Sbjct: 151 KDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG-----LLSAYVQNGRIEDARR 205

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
           LFD  +   +V    ++ GY R  +++DAR +FD+M  +D I W+ MI+GYA+N    EA
Sbjct: 206 LFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEA 265

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI-DKNAFGGDLRVN----- 388
            +LF E+ +     D     +++S     G+LD+A RI   + +KN    +  +      
Sbjct: 266 RRLFEELPI----RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQS 321

Query: 389 ---------------------NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
                                N ++  YA+CG+++ A+ +F+ M +R+ ISW +MI+ +A
Sbjct: 322 QQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYA 381

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
             G +  AL  F KMK +    N       L +C+    ++ G+++   +  +      Y
Sbjct: 382 QSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLV-KAGFQTGY 440

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
                ++ ++G+   + EA ++ E +    ++V W +++A    HG
Sbjct: 441 IAGNALLAMYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARHG 485



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 186/409 (45%), Gaps = 62/409 (15%)

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           DIV W+  I  Y + G  +  L++F  M+                   R   ++Y   + 
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMR-------------------RRSTVTYNAMIS 99

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
            ++ +N                      D A+ +F+K+  ++L+    M+SGY + G + 
Sbjct: 100 GYLSNNK--------------------FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLS 139

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
            AR +F+QM EKD++ W+AM+SG+A+N   +EA K+F++M V     ++++   ++SA  
Sbjct: 140 AARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLV----KNEISWNGLLSAYV 195

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
             G ++ A+R+      +    ++   N ++  Y +   L+ AR +F+RM  R+ ISW  
Sbjct: 196 QNGRIEDARRLF----DSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNI 251

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI  +A +G    A   F ++    +      +  ++      G++DE   IF  M    
Sbjct: 252 MITGYAQNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFEEM---- 303

Query: 482 NIPPKYE-HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
             P K E  +  M+  + ++  + +A EL + MP + N   W +++      G I+ A+ 
Sbjct: 304 --PEKNEVSWNAMIAGYVQSQQIEKARELFDQMP-SRNTSSWNTMVTGYAQCGNIDQAKI 360

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
              ++ Q D     A++   + YA+  + ++   L   MK  G +  R+
Sbjct: 361 LFDEMPQRDCISWAAMI---SGYAQSGQSEEALHLFIKMKRDGGILNRS 406



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 17/205 (8%)

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           +V+ D++ W+  IS Y      + AL +FN M+    +   VT  ++IS        D A
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMR----RRSTVTYNAMISGYLSNNKFDCA 110

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           +++   +       DL   N ++  Y K G+L +AR +F +M  ++V+SW +M++ FA +
Sbjct: 111 RKVFEKMPDR----DLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G    A   F++M    +  N +++ G+L A    G +++ R +F S  +   +      
Sbjct: 167 GFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVS----- 217

Query: 490 YGCMVDLFGRANLLREALELVETMP 514
           + C++  + R   L +A  L + MP
Sbjct: 218 WNCLMGGYVRKKRLDDARSLFDRMP 242



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 19/209 (9%)

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
           D      D+   N  I  Y + G  ESA  VF  MRRR+ +++ +MI+ +  +     A 
Sbjct: 52  DSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCAR 111

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             F KM D  +    V   G +      G +   R +F  M  +  +      +  M+  
Sbjct: 112 KVFEKMPDRDLISWNVMLSGYV----KNGNLSAARALFNQMPEKDVVS-----WNAMLSG 162

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
           F +   + EA ++ + M    N + W  L++A   +G IE     A++L   D   D  +
Sbjct: 163 FAQNGFVEEARKIFDQM-LVKNEISWNGLLSAYVQNGRIE----DARRL--FDSKMDWEI 215

Query: 557 V---LLSNIYAKDKRWQDVGELRKSMKER 582
           V    L   Y + KR  D   L   M  R
Sbjct: 216 VSWNCLMGGYVRKKRLDDARSLFDRMPVR 244


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/647 (37%), Positives = 357/647 (55%), Gaps = 43/647 (6%)

Query: 119 SFPP----ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
           SFPP    +  A+           +H      G   DPFV + L+  Y   G    AR +
Sbjct: 15  SFPPDPHLLPSALKSCPAQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSV 74

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN- 233
           FD+M  +++V WS +I GY   G  +    L E+M+ + VEP+ +  + ++S  +R+G  
Sbjct: 75  FDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRA 134

Query: 234 ----------------------------------LSYGEAVHEFIIDNNVALDAHLQSTL 259
                                             +S G+ VH +++     LDA + + L
Sbjct: 135 LDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTAL 194

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM----VEKDL 315
           I MY  CG  D    +F +    ++    A+V+G SR  QV +A L+F +     VE ++
Sbjct: 195 IDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNV 254

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + W+++++   +N    EA+ LF  MQ  G++P+ VT+  V+ A A++  L   +  H +
Sbjct: 255 VSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCF 314

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
             +  F  D+ V +A++DMYAKCG    AR +F+ M  RNV+SW +MI  +A+HGDA NA
Sbjct: 315 SLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANA 374

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
           +  F  M+     P+ VTF  VL ACS AGL +EGR  F  M   + I P+ EHY CMV 
Sbjct: 375 VQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVT 434

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555
           L GR+  L EA +L+  MPF P+  IWGSL+ +CRV+G + LAE AA++L QL+P + G 
Sbjct: 435 LLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGN 494

Query: 556 LVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQI 615
            VLLSNIYA  K W  V  +R  MK  G+ KE+ CS IE+ N+V+  L  D SH     I
Sbjct: 495 YVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAI 554

Query: 616 YEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRI 675
            EKLN++  E+   G+ P     L D+E++EK  ++  HSEKLA+  GLIS++  + +R+
Sbjct: 555 TEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTPLRV 614

Query: 676 VKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +KNLR+C DCH  +K +S    REI +RD  RFHH+KDG CSC DYW
Sbjct: 615 IKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 161/386 (41%), Gaps = 74/386 (19%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  +  ++ S R   A+   ++M +EG   D       L A+   + +  G QVHG   K
Sbjct: 122 NGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVK 181

Query: 146 LGFGSDPFVQTGLVGMYGACGK-------------------------------ILDARLM 174
            G   D  V T L+ MYG CG+                               + +A L+
Sbjct: 182 AGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLL 241

Query: 175 FDKMSYR----DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           F +   R    ++V W+ ++    QNG   E ++LF  M+   VEP+ + +  +L A + 
Sbjct: 242 FREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFAN 301

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
              L +G + H F +      D ++ S L+ MYA CG    A+ +FD +  +N+V   AM
Sbjct: 302 VAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAM 361

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           + GY+  G   +                               A++LF  MQ C  KPD 
Sbjct: 362 IGGYAMHGDAAN-------------------------------AVQLFCSMQKCKQKPDL 390

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYID--KNAFGGDLRVNN--AIIDMYAKCGSLESARE 406
           VT   V+ AC+  G+ ++ +R   Y +  +   G   R+ +   ++ +  + G L+ A +
Sbjct: 391 VTFTCVLGACSQAGLTEEGRR---YFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYD 447

Query: 407 VFERMR-RRNVISWTSMINAFAIHGD 431
           +   M    +   W S++ +  ++G+
Sbjct: 448 LINEMPFEPDSCIWGSLLGSCRVYGN 473


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 266/778 (34%), Positives = 400/778 (51%), Gaps = 91/778 (11%)

Query: 29  KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPP--SRVS- 85
           +  HA IL    S    N+ +L  L+  +       S++ YA  +F +IP P   +R + 
Sbjct: 25  RAVHAHILT---SGFKPNTFILNRLINIY----CKSSNITYARKLFDKIPKPDIVARTTL 77

Query: 86  ------------------------------NKFIRAISWSHRPKHALKVFLKMLNEGLTI 115
                                         N  I A S  +    AL +F++M   G   
Sbjct: 78  LSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLP 137

Query: 116 DRFSFPPILKAIAR-AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACG-------- 166
           D F+F  +L A++  A+       +H    KLG    P V   L+  Y  C         
Sbjct: 138 DPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSS 197

Query: 167 -------KILD---------------------------ARLMFDKMSYRDIVPWSVMIDG 192
                  K+ D                           AR + D ++Y   V W+ MI G
Sbjct: 198 QLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISG 257

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS----RAGNLSYGEAVHEFIIDNN 248
           Y + GL++E  + F  M    ++ DE   + ++SAC     + G  + G  VH +I+   
Sbjct: 258 YVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTV 317

Query: 249 VALDAH----LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           V    H    + + LIT Y     M  A+ +FDK+ +++++   A++SGY  A ++E+A 
Sbjct: 318 VEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEAN 377

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            IF +M E++++ W+ MISG A+N   +E LKLFN+M+  G++P        I+AC+ LG
Sbjct: 378 SIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLG 437

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            LD  Q+IH  + +      L   NA+I MY++CG +ESA  VF  M   + +SW +MI 
Sbjct: 438 SLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIA 497

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
           A A HG    A+  F +M  E I P+ +TF+ +L AC+HAGL+ EGR  F +M   Y I 
Sbjct: 498 ALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGIT 557

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P  +HY  ++DL  RA +  +A  ++++MPF     IW +L+A CR+HG +EL   AA +
Sbjct: 558 PGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADR 617

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           LL+L P  DG  ++LSN+YA   +W +V  +R  M+ERG+ KE  CS +E+ N V+ FL 
Sbjct: 618 LLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLV 677

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            D  H +   +Y  L ++++E+K  GYVPD    L D+E E K   +  HSEKLA+ YG+
Sbjct: 678 DDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGI 737

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +     + IR+ KNLR+C DCHN  K +SKV  REIV+RDR RFHH+K+G CSC +YW
Sbjct: 738 MKLPLGATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 16/195 (8%)

Query: 5   SQPTKPLTLPTSTAISSCS---SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           S+  +P     + AI++CS   SL + +Q H+Q+++L H            L+T +S   
Sbjct: 416 SEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAG---NALITMYSRCG 472

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
              S    A S+F  +P   S   N  I A++       A+++F +M+ E +  DR +F 
Sbjct: 473 VVES----AESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFL 528

Query: 122 PILKAIARAEGLLEGMQ-VHGLGTKLGF--GSDPFVQTGLVGMYGACGKILDARLMFDKM 178
            IL A   A  + EG      + T+ G   G D + +  L+ +    G  L A+ +   M
Sbjct: 529 TILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYAR--LIDLLCRAGMFLKAQSVIKSM 586

Query: 179 SYRDIVP-WSVMIDG 192
            +    P W  ++ G
Sbjct: 587 PFEAGAPIWEALLAG 601


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/589 (39%), Positives = 359/589 (60%), Gaps = 36/589 (6%)

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
           L+ +  H L T     S P  +   V  + +      A+L+F  +   ++  W+  +  +
Sbjct: 31  LKQLHAHLLKTNSPLSSLPLSRVASVCAFNS--SFSYAKLIFQLLDASEVTHWNTCLRSF 88

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
            +     + ++LF  ++  ++ PD    S +L ACSR  ++  G+ VH ++    +  + 
Sbjct: 89  AEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNM 148

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
            LQ+ ++ +YA CG + +A+ +FDK+  ++++    M++   + G  E A  +F +M E+
Sbjct: 149 FLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPER 208

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
           ++  W++MI GYA+    +EA+ LF EM+  G+ P++VT+++V+ ACA +G L   +RIH
Sbjct: 209 NVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIH 268

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
            + +++ +  ++RV N +IDMY KCG LE A  +F+ M  R V+SW++MI   A HG A 
Sbjct: 269 DFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAE 328

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
           +AL  FNKM +  + PN VTFIG+L+ACSH G+V++GR+ FASMT +Y I P+ EHYGCM
Sbjct: 329 DALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCM 388

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553
           VDLF RA LL+EA E +  MP APN V+WG+L+  C+VH  ++LAE A + L +LDP +D
Sbjct: 389 VDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLND 448

Query: 554 GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTD 613
           G  V+LSNIYA+  RW+DV  +RK M++RG                              
Sbjct: 449 GYYVVLSNIYAEAGRWEDVARVRKLMRDRGT----------------------------- 479

Query: 614 QIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCI 673
             +EKL   +  +K  GYVP+    L+D+E+++K + +  HSEKLA+ +GLI +   + I
Sbjct: 480 --WEKL---LQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVI 534

Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           RI+KNLRVCEDCH  +K++S V  REIV+RDR RFH +K+G CSC DYW
Sbjct: 535 RIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 583



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 216/456 (47%), Gaps = 73/456 (16%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P++  + + +S   +KQ HA +LK        NS L  L L+  +      SS  YA  I
Sbjct: 17  PSTHLLHNFTSPFELKQLHAHLLK-------TNSPLSSLPLSRVASVCAFNSSFSYAKLI 69

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F  + A      N  +R+ +    P  A+ +F ++    ++ D ++   +LKA +R   +
Sbjct: 70  FQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDV 129

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV----- 188
             G  VHG   KLG  S+ F+Q  +V +Y  CG+I  AR +FDKM  RD++ W++     
Sbjct: 130 RNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARL 189

Query: 189 --------------------------MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
                                     MI GY Q G   E ++LF EM+ + + P+E+ + 
Sbjct: 190 VKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVV 249

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            +L AC+  GNL  G  +H+F   +    +  + +TLI MY  CGC++ A  +FD +  +
Sbjct: 250 AVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEER 309

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
            +V  +AM++G +  G+ ED                               AL LFN+M 
Sbjct: 310 TVVSWSAMIAGLAAHGRAED-------------------------------ALALFNKMI 338

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGS 400
             G+KP+ VT + ++ AC+H+G++++ ++    + ++ +G   R+ +   ++D++++ G 
Sbjct: 339 NTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRD-YGIVPRIEHYGCMVDLFSRAGL 397

Query: 401 LESAREVFERMR-RRNVISWTSMINAFAIHGDARNA 435
           L+ A E    M    N + W +++    +H + + A
Sbjct: 398 LQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLA 433


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/565 (40%), Positives = 347/565 (61%), Gaps = 8/565 (1%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+G +    KI++AR  FD M  RD+V W+ +I GY QNG  DE   LF+E  + +V   
Sbjct: 220 LLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTW 279

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
             ++S  +       N    EA   F  D     +    + ++  Y     ++MAK LFD
Sbjct: 280 TAMVSGYIQ------NRMVEEARELF--DRMPERNEVSWNAMLAGYVQGERVEMAKELFD 331

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
            +  +N+     M++GY++ G++ +A+ +FD+M ++D + W+AMI+GY+++ H  EAL+L
Sbjct: 332 VMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRL 391

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F  M+  G + ++ +  S +S CA +  L+  +++H  + K  +     V NA++ MY K
Sbjct: 392 FVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCK 451

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CGS+E A ++F+ M  ++++SW +MI  ++ HG    AL FF  MK E + P+  T + V
Sbjct: 452 CGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAV 511

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L ACSH GLVD+GR+ F +MT +Y + P  +HY CMVDL GRA LL EA  L++ MPF P
Sbjct: 512 LSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEP 571

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
           +  IWG+L+ A RVHG  ELAE AA ++  ++P++ G  VLLSN+YA   RW DVG+LR 
Sbjct: 572 DAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRV 631

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            M+++G+ K    S IE+ N+ + F   D  H + D+I+  L ++   +K AGYV     
Sbjct: 632 RMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSV 691

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
            L D+E+EEK  ++ +HSE+LA+ YG++       IR++KNLRVCEDCHN IK ++KV  
Sbjct: 692 VLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTG 751

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           R I++RD  RFHH+KDG CSC DYW
Sbjct: 752 RLIILRDNNRFHHFKDGSCSCGDYW 776



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 204/465 (43%), Gaps = 80/465 (17%)

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           +  Y   G+  +A  +F +M     V ++ MI GY +NG F+    LF+EM     E D 
Sbjct: 66  ISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMP----ERDL 121

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           +  + ++    R  NL     + E + + +V       +T+++ YA  GC+D A+ +FD+
Sbjct: 122 VSWNVMIKGYVRNRNLGKARELFERMPERDVC----SWNTILSGYAQNGCVDDARRVFDR 177

Query: 279 VLLKNLVVSTAMVSGYSRAGQVE-------------------------------DARLIF 307
           +  KN V   A++S Y +  ++E                               +AR  F
Sbjct: 178 MPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFF 237

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP------------------- 348
           D M  +D++ W+ +I+GYA+N    EA +LF+E  V  +                     
Sbjct: 238 DSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARE 297

Query: 349 --DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG----GDLRVNNAIIDMYAKCGSLE 402
             D++   + +S  A L    Q +R+ +   K  F      ++   N +I  YA+CG + 
Sbjct: 298 LFDRMPERNEVSWNAMLAGYVQGERVEM--AKELFDVMPCRNVSTWNTMITGYAQCGKIS 355

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            A+ +F++M +R+ +SW +MI  ++  G +  AL  F  M+ E    N  +F   L  C+
Sbjct: 356 EAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCA 415

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD-----LFGRANLLREALELVETMPFAP 517
               ++ G+++   +     +   YE  GC V      ++ +   + EA +L + M    
Sbjct: 416 DVVALELGKQLHGRL-----VKGGYET-GCFVGNALLLMYCKCGSIEEANDLFKEMA-GK 468

Query: 518 NVVIWGSLMAACRVH--GEIELAEFAAKQLLQLDPDHDGALVLLS 560
           ++V W +++A    H  GE  L  F + +   L PD    + +LS
Sbjct: 469 DIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLS 513



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 2/243 (0%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++F ++P          I   S S     AL++F+ M  EG  ++R SF   L   A 
Sbjct: 357 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCAD 416

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G Q+HG   K G+ +  FV   L+ MY  CG I +A  +F +M+ +DIV W+ M
Sbjct: 417 VVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTM 476

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDNN 248
           I GY ++G  +E L  FE MK   ++PD+  +  +LSACS  G +  G +  H    D  
Sbjct: 477 IAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYG 536

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA-GQVEDARLIF 307
           V  ++   + ++ +    G ++ A  L   +  +        + G SR  G  E A    
Sbjct: 537 VRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAA 596

Query: 308 DQM 310
           D++
Sbjct: 597 DKI 599



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 138/300 (46%), Gaps = 30/300 (10%)

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           + D+  W+  IS Y       EAL++F  M     +   V+  ++IS     G  + A+ 
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMP----RWSSVSYNAMISGYLRNGEFELARM 111

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           +   + +     DL   N +I  Y +  +L  ARE+FERM  R+V SW ++++ +A +G 
Sbjct: 112 LFDEMPER----DLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGC 167

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
             +A   F++M ++    N V++  +L A      ++E   +F S  N   +      + 
Sbjct: 168 VDDARRVFDRMPEK----NDVSWNALLSAYVQNSKLEEACVLFGSRENWALVS-----WN 218

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           C++  F +   + EA +  ++M    +VV W +++     +GEI+     A+QL    P 
Sbjct: 219 CLLGGFVKKKKIVEARQFFDSMK-VRDVVSWNTIITGYAQNGEID----EARQLFDESPV 273

Query: 552 HD-GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC-------SRIEMNNEVYEFL 603
           HD      + + Y +++  ++  EL   M ER  +   A         R+EM  E+++ +
Sbjct: 274 HDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVM 333


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/625 (38%), Positives = 377/625 (60%), Gaps = 11/625 (1%)

Query: 1   MSTLSQPTKPLTLPTSTA-ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL 59
            ST + PT  L+  +  + + SC S+TH+KQ HAQI ++      Q+ + L  L+   + 
Sbjct: 25  FSTFTNPTTGLSQQSCISYLKSCKSMTHLKQIHAQIFRVGLH---QDIVSLNKLMAFCTD 81

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
           P     +L YA  +F  I  P   + N  I+A +     K  L +F K+  +GL  D F+
Sbjct: 82  PFN--GNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFT 139

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +P + KAI     + +  ++ GL TK G   D +V+  L+ MY         +++FD+M 
Sbjct: 140 YPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMP 199

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM-SNVEPDEMVLSKILSACSRAGNLSYGE 238
            RD++ W+VMI GY +   F++ +N+F  M+  S + PDE  +   LSAC+    L  G+
Sbjct: 200 DRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGK 259

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
            +H ++ DN V     + + L+ MY  CGC+ +A+ +F+++  KN++  T MVSGY+  G
Sbjct: 260 KIHHYVRDN-VKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCG 318

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
           ++E+AR +F+    +D++ W+AMI+GY + N   EA+ LF EMQ+  +KPDK  ++S+++
Sbjct: 319 ELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLT 378

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
            CA  G ++Q + IH +ID+N    D  V  A+I+MYAKCG +E A E+F  +R ++  S
Sbjct: 379 GCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTAS 438

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           WTS+I   A++G    AL  F+KMK   + P+ +TFIGVL ACSH GLV+EGR+ F SM 
Sbjct: 439 WTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMR 498

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP---FAPNVVIWGSLMAACRVHGEI 535
            EY I PK EHYGC+VDL GRA LL EA EL++ +P    A  V ++GSL++ACR++G +
Sbjct: 499 MEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNV 558

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           E+ E  AKQL++ +        LL+NIYA   RW+DV ++R+ MK+ G+ K   CS IE+
Sbjct: 559 EMGERVAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEV 618

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLN 620
           ++ ++EF +   SH +  +IY  LN
Sbjct: 619 DSIIHEFFSGHPSHPEMREIYYMLN 643


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/603 (39%), Positives = 366/603 (60%), Gaps = 36/603 (5%)

Query: 151 DP-FVQTGLVGMYGACGKILDARLMFDK-MSYRDIVPWSVMIDGYFQNGLFDEVLNLFE- 207
           DP  +    +G+  + G +  + L+F+  +S+ +I  ++ ++  + Q+  +   ++ F  
Sbjct: 56  DPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNN 115

Query: 208 EMKMSNV-EPDEMVLSKILSACSRAGNLSYGEAVHEFI---------------------- 244
           ++ + N   PDE   + +L AC+    +  G+ VH F+                      
Sbjct: 116 QLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKV 175

Query: 245 ---------IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
                     D  V  D    +TLI+ Y   G +D A+ +FD ++ KNLV  + M+SGY+
Sbjct: 176 GCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYA 235

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ-VCGMKPDKVTML 354
           R G +E+AR +F+ M  ++++ W+AMI+GYA+N    +A++LF +MQ   G+ P+ VT++
Sbjct: 236 RVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLV 295

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           SV+SACAHLG LD  + IH +I +N     L + NA+ DMYAKCG +  A+ VF  M  R
Sbjct: 296 SVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHER 355

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           +VISW+ +I   A++G A  A  FF +M ++ ++PN ++F+G+L AC+HAGLVD+G E F
Sbjct: 356 DVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYF 415

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
             M   Y I PK EHYGC+VDL  RA  L +A  L+ +MP  PNV++WG+L+  CR++ +
Sbjct: 416 DMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKD 475

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
            E  E    ++L+LD +H G+LV L+N+YA   R  D    R  M++   +K   CS IE
Sbjct: 476 AERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIE 535

Query: 595 MNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWH 654
           +NN VYEF   D SH Q+ +IY  + E+  ++K AGY P     + ++++EEK + +  H
Sbjct: 536 INNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTH 595

Query: 655 SEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDG 714
           SEKLAL +GLI++ + + IRIVKNLRVC DCH+ IK++SK+  REIV+RDR+RFHH+KDG
Sbjct: 596 SEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDG 655

Query: 715 VCS 717
            CS
Sbjct: 656 KCS 658



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 202/473 (42%), Gaps = 108/473 (22%)

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLK---MLNEGLTID 116
           +++  +L +++ IF+   + P+  + N  ++A S  H   H    +     +L      D
Sbjct: 68  SSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFS-QHNAWHTTISYFNNQLVLPNAPNPD 126

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
            ++F  +LKA A    +LEG +VH   TK G  S+ FV+  LV +Y   G    A+ +FD
Sbjct: 127 EYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFD 186

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFD-------------------------------EVLNL 205
           +M  RD+V W+ +I GY  +G+ D                               E   L
Sbjct: 187 EMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQL 246

Query: 206 FEEMKMSNV--------------------------------EPDEMVLSKILSACSRAGN 233
           FE M M NV                                 P+++ L  +LSAC+  G 
Sbjct: 247 FENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGA 306

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           L  G+ +H FI  N + +   L + L  MYA CGC+  AKG                   
Sbjct: 307 LDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKG------------------- 347

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
                       +F +M E+D+I WS +I G A   +  EA   F EM   G++P+ ++ 
Sbjct: 348 ------------VFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISF 395

Query: 354 LSVISACAHLGVLDQAQRIHLYID--KNAFGGDLRVNN--AIIDMYAKCGSLESAREVFE 409
           + +++AC H G++D+      Y D     +G   ++ +   ++D+ ++ G L+ A  +  
Sbjct: 396 MGLLTACTHAGLVDKGLE---YFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLIN 452

Query: 410 RM-RRRNVISWTSMINAFAIHGDA-RNALIFFNKMKDESIDPNGVTFIGVLYA 460
            M  + NVI W +++    I+ DA R   + +  ++ +S     + ++  +YA
Sbjct: 453 SMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYA 505


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/514 (43%), Positives = 331/514 (64%), Gaps = 32/514 (6%)

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
           K+ N+ PDE+ +  ++ AC++ GNL  G+ +H +     + LD                 
Sbjct: 3   KLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSY--SKELGLD----------------- 43

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
                       +NL V+ A++  Y +   +E A+ +F+++ EKD++ W++M+SG A++ 
Sbjct: 44  ------------ENLSVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSG 91

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389
           + QE+L LF +MQ+  ++PD++T++ V+SACA  G LDQ + IHL IDK     DL +  
Sbjct: 92  YFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLET 151

Query: 390 AIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449
           A++DMYAKCGS++ A +VF RMR RNV +W +MI   A+HG   +A+  F++M+ + + P
Sbjct: 152 ALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMP 211

Query: 450 NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
           + VTFI +L ACSHAGLVDEG  +F +M N++ I P+ EHYGC+VDL  RA  + +AL  
Sbjct: 212 DDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAF 271

Query: 510 VETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW 569
           +E MP   N V+W +L+ ACR  G  +LAE   +++++L+PD  G  V+LSN+YA   +W
Sbjct: 272 IENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQW 331

Query: 570 QDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK-P 628
               +LRK MK +GI K   CS IE+N  +++F+  DRSH QT+QIY  + E+   +   
Sbjct: 332 DHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLD 391

Query: 629 AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
            G+VP   + L D+E+EEK   +  HSEKLA+  GLIS+   S IRIVKNLRVC DCH+F
Sbjct: 392 GGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSF 451

Query: 689 IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +K+ SKVY REIV RDR+RFHH+K+G CSC D+W
Sbjct: 452 LKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 485



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 157/318 (49%), Gaps = 35/318 (11%)

Query: 111 EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD 170
           + L  D  +   ++ A A+   L  G  +H    +LG   +  V   ++ MY  C  I  
Sbjct: 5   DNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIES 64

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           A+ +F+++  +D++ W+ M+ G  ++G F E L LF +M++  +EPDE+ L  +LSAC++
Sbjct: 65  AQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQ 124

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
            G L  G+ +H  I    +  D  L++ L+ MYA CG +D+A  +F ++ ++N+    AM
Sbjct: 125 TGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAM 184

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           + G +  G  EDA  +FDQM    L+                               PD 
Sbjct: 185 IGGLAMHGHGEDAISLFDQMEXDKLM-------------------------------PDD 213

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVF 408
           VT ++++ AC+H G++D+   +   + KN F  + R+ +   ++D+  +   ++ A    
Sbjct: 214 VTFIALLCACSHAGLVDEGLAMFQAM-KNKFQIEPRMEHYGCVVDLLCRARKVDDALAFI 272

Query: 409 ERMR-RRNVISWTSMINA 425
           E M  + N + W +++ A
Sbjct: 273 ENMPIKANSVLWATLLGA 290



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 159/349 (45%), Gaps = 19/349 (5%)

Query: 9   KPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP-SSL 67
           +P  +   + + +C+ L ++++      KL HS+  +  L   L + +  L        +
Sbjct: 8   RPDEVTMVSLVPACAQLGNLERG-----KLLHSYSKELGLDENLSVNNAILDMYCKCDDI 62

Query: 68  YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
             A  +F++I           +  ++ S   + +L +F KM    +  D  +   +L A 
Sbjct: 63  ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSAC 122

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
           A+   L +G  +H L  K     D  ++T LV MY  CG I  A  +F +M  R++  W+
Sbjct: 123 AQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWN 182

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
            MI G   +G  ++ ++LF++M+   + PD++    +L ACS AG +  G A+ +  + N
Sbjct: 183 AMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQ-AMKN 241

Query: 248 NVALDAHLQ--STLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDAR 304
              ++  ++    ++ +      +D A    + + +K N V+   ++      G  + A 
Sbjct: 242 KFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAE 301

Query: 305 LIFDQMVEKD------LICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
            I  +++E +       +  S + +G ++ +H   ALKL  +M+  G++
Sbjct: 302 KIXRRVIELEPDSCGRYVMLSNLYAGVSQWDH---ALKLRKQMKNKGIE 347


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/672 (35%), Positives = 382/672 (56%), Gaps = 40/672 (5%)

Query: 53  LLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG 112
           +L +  + ++T  +++    + S  P+    V N  I       R + AL   L M   G
Sbjct: 1   MLRTKHVLSSTHKAIFQKPRLLSTFPSNSHHVLNIHIHDT----RLREAL---LHMALRG 53

Query: 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR 172
           L  +   +  +L    R   + EG +VH    K  +    +++T L+  Y  C  + DAR
Sbjct: 54  LDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDAR 113

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
            +FD M  R++V W+ MI  Y Q G   + L+LF +M  S  EP+E   + +L++C  + 
Sbjct: 114 HVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSS 173

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
               G  +H  II  N     ++ S+L+ MYA                            
Sbjct: 174 GFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYA---------------------------- 205

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
              + G++ +AR IF  + E+D++  +A+ISGYA+    +EAL+LF  +Q  GM+ + VT
Sbjct: 206 ---KDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVT 262

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
             SV++A + L  LD  +++H ++ ++     + + N++IDMY+KCG+L  AR +F+ + 
Sbjct: 263 YTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLH 322

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEGR 471
            R VISW +M+  ++ HG+ R  L  FN M DE+ + P+ VT + VL  CSH GL D+G 
Sbjct: 323 ERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGM 382

Query: 472 EIFASMTN-EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
           +IF  MT+ + ++ P  +HYGC+VD+ GRA  +  A E V+ MPF P+  IWG L+ AC 
Sbjct: 383 DIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACS 442

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
           VH  +++ EF   QLLQ++P++ G  V+LSN+YA   RW+DV  LR  M ++ + KE   
Sbjct: 443 VHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGR 502

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
           S IE++  ++ F  +D SH + +++  K+ E+ +  K AGYVPD+   L D+++E+K ++
Sbjct: 503 SWIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKI 562

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           +L HSEKLAL +GLI++ +   IR++KNLR+C DCHNF K  SK+Y RE+ +RD+ RFH 
Sbjct: 563 LLSHSEKLALTFGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHR 622

Query: 711 YKDGVCSCKDYW 722
              G CSC DYW
Sbjct: 623 IVGGKCSCGDYW 634



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 193/406 (47%), Gaps = 40/406 (9%)

Query: 29  KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKF 88
           ++ HA ++K     H    + L+  L  F +      SL  A  +F  +P          
Sbjct: 78  QRVHAHMIKT----HYLPCVYLRTRLIVFYVKC---DSLRDARHVFDVMPERNVVSWTAM 130

Query: 89  IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148
           I A S       AL +F++ML  G   + F+F  +L +   + G + G Q+H    KL +
Sbjct: 131 ISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNY 190

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
            +  +V + L+ MY   GKI +AR +F  +  RD+V  + +I GY Q GL +E L LF  
Sbjct: 191 EAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRR 250

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           ++   ++ + +  + +L+A S    L +G+ VH  ++ + V     LQ++LI MY+ CG 
Sbjct: 251 LQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGN 310

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           +  A+ +FD +  + ++   AM+ GYS+ G+  +   +F+ M++++ +            
Sbjct: 311 LTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKV------------ 358

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH--LYIDKNAFGGDLR 386
                             KPD VT+L+V+S C+H G+ D+   I   +   K +   D +
Sbjct: 359 ------------------KPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSK 400

Query: 387 VNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD 431
               ++DM  + G +E+A E  ++M    +   W  ++ A ++H +
Sbjct: 401 HYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSN 446


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/635 (35%), Positives = 360/635 (56%), Gaps = 32/635 (5%)

Query: 89   IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148
            I A+  +  P+ AL +F +M N+ +  +R +   IL A A    L  G  +H    K   
Sbjct: 402  IAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADM 461

Query: 149  GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
             SD    T LV MY  CG    A   F++MS RDIV W+ +I+GY Q G     +++F +
Sbjct: 462  DSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYK 521

Query: 209  MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
            +++S + PD   +  ++ AC+   +L  G  +H  I+      D H+++ LI MYA CG 
Sbjct: 522  LRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGS 581

Query: 269  MDMAKGLFDKV-LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
            +  A+ LF+K    K+ V    +++ Y                                +
Sbjct: 582  LPSAEFLFNKTDFTKDEVTWNVIIAAY-------------------------------MQ 610

Query: 328  NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
            N H +EA+  F++M++    P+ VT +SV+ A A+L    +    H  I +  F  +  V
Sbjct: 611  NGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLV 670

Query: 388  NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
             N++IDMYAKCG L  + ++F  M  ++ +SW +M++ +A+HG    A+  F+ M++  +
Sbjct: 671  GNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQV 730

Query: 448  DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
              + V+F+ VL AC H GLV+EGR+IF SM+++Y+I P  EHY CMVDL GRA L  E L
Sbjct: 731  QIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETL 790

Query: 508  ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
              ++ MP  P+  +WG+L+ +CR+H  ++L E A   L++L+P +    V+LS+IYA+  
Sbjct: 791  GFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSG 850

Query: 568  RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627
            RW D G+ R  M + G+ K   CS +E+ N+V+ F   D+SH Q + ++   N ++ +++
Sbjct: 851  RWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKME 910

Query: 628  PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHN 687
              GYVPD    L ++E+E+K   +  HSE+LA+ + L+++   S I+IVKNLRVC DCH 
Sbjct: 911  KIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHT 970

Query: 688  FIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              K +SK+  R I++RD TRFHH++DG+CSC DYW
Sbjct: 971  TTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 177/630 (28%), Positives = 288/630 (45%), Gaps = 86/630 (13%)

Query: 3   TLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT 62
           +LS  T    L     +SSC  L  + Q HAQI+     HH   + L+ L          
Sbjct: 23  SLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLY--------- 73

Query: 63  TPSSLYY----ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
              SL++    A S+F   P P   + N  IRA + S +   AL+++  M+ +GL  D++
Sbjct: 74  ---SLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKY 130

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +F  +LKA   A  L EG+  HG   + G   D F+  GLV MY   G +  AR +FDKM
Sbjct: 131 TFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKM 190

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
             RD+V W+ MI G  Q+    E ++ F  M++  VEP  + L  +     +  N+    
Sbjct: 191 PKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCR 250

Query: 239 AVHEFII-----------------------------DNNVALDAHLQSTLITMYANCGCM 269
           ++H ++                              D  V  D     T++  YA+ GC 
Sbjct: 251 SIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCF 310

Query: 270 DMAKGLFDKVLLKN---------------------------------------LVVSTAM 290
                LFDK+ L N                                       ++V+T +
Sbjct: 311 VEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPL 370

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           +  Y++ G+ E A+ +F  +  +DL+ WSA+I+   +  +P+EAL LF EMQ   MKP++
Sbjct: 371 MVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNR 430

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           VT++S++ ACA L +L   + IH +  K     DL    A++ MYAKCG   +A   F R
Sbjct: 431 VTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNR 490

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M  R++++W S+IN +A  GD  NA+  F K++  +I+P+  T +GV+ AC+    +D+G
Sbjct: 491 MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG 550

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
             I   +  +            ++D++ +   L  A  L     F  + V W  ++AA  
Sbjct: 551 TCIHGLIV-KLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYM 609

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLS 560
            +G  + A  +  Q ++L+  H  ++  +S
Sbjct: 610 QNGHAKEAISSFHQ-MRLENFHPNSVTFVS 638



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 133/462 (28%), Positives = 227/462 (49%), Gaps = 36/462 (7%)

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM 161
           L++F KM    + I++ S      A A    L +G ++HG   +    SD  V T L+ M
Sbjct: 314 LELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVM 373

Query: 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221
           Y  CG+   A+ +F  +  RD+V WS +I    Q G  +E L+LF+EM+   ++P+ + L
Sbjct: 374 YAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTL 433

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
             IL AC+    L  G+++H F +  ++  D    + L++MYA CG    A   F+++  
Sbjct: 434 MSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSS 493

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           +++V   ++++GY++ G                                P  A+ +F ++
Sbjct: 494 RDIVTWNSLINGYAQIGD-------------------------------PYNAIDMFYKL 522

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
           ++  + PD  TM+ V+ ACA L  LDQ   IH  I K  F  D  V NA+IDMYAKCGSL
Sbjct: 523 RLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSL 582

Query: 402 ESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
            SA  +F +    ++ ++W  +I A+  +G A+ A+  F++M+ E+  PN VTF+ VL A
Sbjct: 583 PSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPA 642

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
            ++     EG    A +  +            ++D++ +   L  + +L   M    + V
Sbjct: 643 AAYLAAFREGMAFHACII-QMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDH-KDTV 700

Query: 521 IWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALVLLS 560
            W ++++   VHG  +  +A F+  Q  Q+  D    + +LS
Sbjct: 701 SWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLS 742



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 182/397 (45%), Gaps = 35/397 (8%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           AL+ F+++ +      N  I   +    P +A+ +F K+    +  D  +   ++ A A 
Sbjct: 484 ALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACAL 543

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY-RDIVPWSV 188
              L +G  +HGL  KLGF SD  V+  L+ MY  CG +  A  +F+K  + +D V W+V
Sbjct: 544 LNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNV 603

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I  Y QNG   E ++ F +M++ N  P+ +    +L A +       G A H  II   
Sbjct: 604 IIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMG 663

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              +  + ++LI MYA CG +  ++ LF+++  K+ V   AM+SGY+  G          
Sbjct: 664 FLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHG---------- 713

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
                                H   A+ LF+ MQ   ++ D V+ +SV+SAC H G++++
Sbjct: 714 ---------------------HGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEE 752

Query: 369 AQRI-HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAF 426
            ++I H   DK     DL     ++D+  + G  +      + M    +   W +++ + 
Sbjct: 753 GRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSC 812

Query: 427 AIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACS 462
            +H + +   +  + + K E  +P     +  +YA S
Sbjct: 813 RMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQS 849



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 22/341 (6%)

Query: 19  ISSCSSLTHMKQ---THAQILKLSHSH--HSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           + +C+ L  + Q    H  I+KL      H +N+L+  +     SLP+        A  +
Sbjct: 538 VPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALI-DMYAKCGSLPS--------AEFL 588

Query: 74  FSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           F++       V+ N  I A   +   K A+  F +M  E    +  +F  +L A A    
Sbjct: 589 FNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAA 648

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
             EGM  H    ++GF S+  V   L+ MY  CG++  +  +F++M ++D V W+ M+ G
Sbjct: 649 FREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSG 708

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN-NVAL 251
           Y  +G  D  + LF  M+ S V+ D +    +LSAC   G +  G  +   + D  ++  
Sbjct: 709 YAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKP 768

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLL--KNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
           D    + ++ +    G  D   G F KV+    +  V  A++        V+   +  D 
Sbjct: 769 DLEHYACMVDLLGRAGLFDETLG-FIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDH 827

Query: 310 MVE---KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           +V+   ++   +  + S YA++    +A K  ++M   G+K
Sbjct: 828 LVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLK 868


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/623 (36%), Positives = 364/623 (58%), Gaps = 33/623 (5%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL  F  M N G   D+ S   ++ A  R+  LL+G +VH    + G  S+  +   LV 
Sbjct: 333 ALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVD 392

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  C  +      F+ M  +D++ W+ +I GY QN    E +NLF ++++  ++ D M+
Sbjct: 393 MYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMM 452

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           +  +L ACS   + ++   +H ++   ++A                            ++
Sbjct: 453 IGSVLRACSGLKSRNFIREIHGYVFKRDLA---------------------------DIM 485

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
           L+N     A+V+ Y   G ++ AR  F+ +  KD++ W++MI+    N  P EAL+LF  
Sbjct: 486 LQN-----AIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYS 540

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           ++   ++PD + ++S +SA A+L  L + + IH ++ +  F  +  + ++++DMYA CG+
Sbjct: 541 LKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGT 600

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E++R++F  +++R++I WTSMINA  +HG    A+  F KM D+++ P+ +TF+ +LYA
Sbjct: 601 VENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYA 660

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSH+GL+ EG+  F  M   Y + P  EHY CMVDL  R+N L EA   V  MP  P+  
Sbjct: 661 CSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSE 720

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           IW +L+ AC +H   EL E AAK+LLQ D ++ G   L+SNI+A D RW DV E+R  MK
Sbjct: 721 IWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMK 780

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL-KPAGYVPDIHSAL 639
             G+ K   CS IE++N+++ F+  D+SH QTD IY KL +    L K  GY+       
Sbjct: 781 GNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVF 840

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
            ++ +EEK +++  HSE+LAL YGL+ + K +CIRI KNLR+C+DCH F K+ S+V  R 
Sbjct: 841 HNVSEEEKTQMLYGHSERLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRP 900

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           +V+RD  RFHH++ G+CSC D+W
Sbjct: 901 LVVRDANRFHHFERGLCSCGDFW 923



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 130/479 (27%), Positives = 237/479 (49%), Gaps = 41/479 (8%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL +F +M   G+  + ++F   L+ +     +  GM +HG   K    +D +V   L+ 
Sbjct: 232 ALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIA 291

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG++ DA  +F+ M  RD V W+ ++ G  QN L+ + LN F +M+ S  +PD++ 
Sbjct: 292 MYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVS 351

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           +  +++A  R+GNL  G+ VH + I N +  +  + +TL+ MYA C C+      F+ + 
Sbjct: 352 VLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMH 411

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            K+L+                                W+ +I+GYA+N    EA+ LF +
Sbjct: 412 EKDLI-------------------------------SWTTIIAGYAQNEFHLEAINLFRK 440

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           +QV GM  D + + SV+ AC+ L   +  + IH Y+ K     D+ + NAI+++Y + G 
Sbjct: 441 VQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGH 499

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           ++ AR  FE +R ++++SWTSMI     +G    AL  F  +K  +I P+ +  I  L A
Sbjct: 500 IDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSA 559

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
            ++   + +G+EI   +  +     +      +VD++     +  + ++  ++    +++
Sbjct: 560 TANLSSLKKGKEIHGFLIRK-GFFLEGPIASSLVDMYACCGTVENSRKMFHSVK-QRDLI 617

Query: 521 IWGSLMAACRVH--GEIELAEFAAKQLLQLDPDHDGALVLL-----SNIYAKDKRWQDV 572
           +W S++ A  +H  G   +A F       + PDH   L LL     S +  + KR+ ++
Sbjct: 618 LWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEI 676



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 149/566 (26%), Positives = 255/566 (45%), Gaps = 56/566 (9%)

Query: 8   TKPLTLPT------STAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFS 58
           T PL  P+      S  +  C    +L   +Q HA +LK         S L   L T   
Sbjct: 36  THPLATPSRLEHAHSLLLDLCVAAKALPQGQQLHALLLK---------SHLSAFLATKLV 86

Query: 59  LPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
           L      SL  A+ +F ++        N  + A   S +   A++++  M   G+ ID  
Sbjct: 87  LMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDAC 146

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK- 177
           +FP +LKA         G ++HG+  K G+G   FV   L+ MYG CG +  AR++FD  
Sbjct: 147 TFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGI 206

Query: 178 -MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
            M   D V W+ +I  +   G   E L+LF  M+   V  +       L        +  
Sbjct: 207 MMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKL 266

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G  +H  ++ +N   D ++ + LI MYA CG M+                          
Sbjct: 267 GMGIHGAVLKSNHFADVYVANALIAMYAKCGRME-------------------------D 301

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
           AG+V      F+ M+ +D + W+ ++SG  +N    +AL  F +MQ  G KPD+V++L++
Sbjct: 302 AGRV------FESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNL 355

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           I+A    G L + + +H Y  +N    ++++ N ++DMYAKC  ++     FE M  +++
Sbjct: 356 IAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDL 415

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           ISWT++I  +A +     A+  F K++ + +D + +    VL ACS     +  REI   
Sbjct: 416 ISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGY 475

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG-EI 535
           +          ++   +V+++G    +  A    E++  + ++V W S++  C  +G  +
Sbjct: 476 VFKRDLADIMLQN--AIVNVYGEVGHIDYARRAFESIR-SKDIVSWTSMITCCVHNGLPV 532

Query: 536 ELAE-FAAKQLLQLDPDHDGALVLLS 560
           E  E F + +   + PD    +  LS
Sbjct: 533 EALELFYSLKQTNIQPDSIAIISALS 558



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 75/147 (51%)

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           P  AL++F  +    +  D  +    L A A    L +G ++HG   + GF  +  + + 
Sbjct: 531 PVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASS 590

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           LV MY  CG + ++R MF  +  RD++ W+ MI+    +G  ++ + LF++M   NV PD
Sbjct: 591 LVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPD 650

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFI 244
            +    +L ACS +G +  G+   E +
Sbjct: 651 HITFLALLYACSHSGLMVEGKRFFEIM 677


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/614 (37%), Positives = 361/614 (58%), Gaps = 42/614 (6%)

Query: 119 SFPP----------ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI 168
           SFPP          +L++   ++ L  G Q+H     LG   +  + T LV +Y     +
Sbjct: 39  SFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSL 98

Query: 169 LDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228
           L+AR +FDK+  +++  W+V+I GY  NG  D  + L+ +M    + PD   L  +L AC
Sbjct: 99  LNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKAC 158

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
           S    +  G ++HE++I +    D                               L V  
Sbjct: 159 SALSAIGEGRSIHEYVIKSGWERD-------------------------------LFVGA 187

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
           A++  Y++ G V DA  +FD++V +D + W++M++ YA+N HP E++ L  EM   G++P
Sbjct: 188 ALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRP 247

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
            + T+++VIS+ A +  L   + IH +  ++ F  + +V  A+IDMYAKCGS++ A  +F
Sbjct: 248 TEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALF 307

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
           ER+R + V+SW ++I  +A+HG A  AL  F+KM+ E   P+ +TF+GVL ACS   L+D
Sbjct: 308 ERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLD 366

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           EGR ++  M  +Y I P  +HY CM+DL G    L EA +L+  M   P+  +WG+L+ +
Sbjct: 367 EGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNS 426

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           C++HG +ELAE A ++L++L+PD  G  V+L+N+YA+  +W+ V +LR+ M ++ I K  
Sbjct: 427 CKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNI 486

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
           ACS IE+ N+VY FL  D SH  +D IY +L  +   +  AGY PD  S   D+E++EK 
Sbjct: 487 ACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKT 546

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
            ++  HSE+LA+ +GLIS+   + + I KNLR+CEDCH  IK +SK+  REI +RD  R+
Sbjct: 547 SMVCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRY 606

Query: 709 HHYKDGVCSCKDYW 722
           H +K G+CSC D+W
Sbjct: 607 HSFKHGMCSCGDHW 620



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 127/456 (27%), Positives = 216/456 (47%), Gaps = 45/456 (9%)

Query: 2   STLSQPTKPLTLPTSTAI-SSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSF 57
           S  S P +P T    T++  SC    +L   KQ HAQ   L  +++         L T  
Sbjct: 36  SVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQD-------LATKL 88

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117
                  +SL  A ++F +IP     + N  IR  +W+    +A+ ++ KML+ GL  D 
Sbjct: 89  VHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDN 148

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
           F+ P +LKA +    + EG  +H    K G+  D FV   L+ MY  CG ++DA  +FDK
Sbjct: 149 FTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDK 208

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           +  RD V W+ M+  Y QNG  DE ++L  EM  + V P E  L  ++S+ +    L YG
Sbjct: 209 IVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYG 268

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
             +H F   +    +  +++ LI MYA CG + +A  LF+++  K +V   A+++GY+  
Sbjct: 269 REIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMH 328

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           G    A  +FD+M ++D                                +PD +T + V+
Sbjct: 329 GLAVGALDLFDKMRKED--------------------------------RPDHITFVGVL 356

Query: 358 SACAHLGVLDQAQRIH-LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRN 415
           +AC+   +LD+ + ++ L +        ++    +ID+   CG L+ A ++   M  + +
Sbjct: 357 AACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPD 416

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
              W +++N+  IHG+   A +   K+ +   D +G
Sbjct: 417 SGVWGALLNSCKIHGNVELAELALEKLIELEPDDSG 452


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/524 (43%), Positives = 332/524 (63%), Gaps = 33/524 (6%)

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
           W+ +I GY + G      +L+ EM++S  VEPD      ++ A +   ++  GE +H  +
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           I +      ++Q++L+ +YANCG                                V  A 
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCG-------------------------------DVASAY 176

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            +FD+M EKDL+ W+++I+G+AEN  P+EAL L+ EM   G+KPD  T++S++SACA +G
Sbjct: 177 KVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIG 236

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L   +R+H+Y+ K     +L  +N ++D+YA+CG +E A+ +F+ M  +N +SWTS+I 
Sbjct: 237 ALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIV 296

Query: 425 AFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
             A++G  + A+  F  M+  E + P  +TF+G+LYACSH G+V EG E F  M  EY I
Sbjct: 297 GLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKI 356

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
            P+ EH+GCMVDL  RA  +++A E +++MP  PNVVIW +L+ AC VHG+ +LAEFA  
Sbjct: 357 EPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARI 416

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
           Q+LQL+P+H G  VLLSN+YA ++RW DV ++RK M   G+ K    S +E+ N V+EFL
Sbjct: 417 QILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFL 476

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYG 663
             D+SH Q+D IY KL E+   L+  GYVP I +  VD+E+EEK   +++HSEK+A+ + 
Sbjct: 477 MGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFM 536

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTR 707
           LIS+ + S I +VKNLRVC DCH  IKLVSKVY REIV+RDR+R
Sbjct: 537 LISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 223/435 (51%), Gaps = 45/435 (10%)

Query: 23  SSLTHMKQTHAQILKLSHSHHSQNSLLLK-LLLTSFSLPTTTPSSLYYALSIFSQIPAPP 81
           SS+T ++Q HA    + H     ++ L K L+    SLP+  P S  YA  +FS+I  P 
Sbjct: 28  SSITKLRQIHA--FSIRHGVSISDAELGKHLIFYLVSLPSPPPMS--YAHKVFSKIEKPI 83

Query: 82  SR-VSNKFIRAISWSHRPKHALKVFLKMLNEGLT-IDRFSFPPILKAIARAEGLLEGMQV 139
           +  + N  IR  +       A  ++ +M   GL   D  ++P ++KA+     +  G  +
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
           H +  + GFGS  +VQ  L+ +Y  CG +  A  +FDKM  +D+V W+ +I+G+ +NG  
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203

Query: 200 DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259
           +E L L+ EM    ++PD   +  +LSAC++ G L+ G+ VH ++I   +  + H  + L
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVL 263

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWS 319
           + +YA CG ++ AK LFD+++ KN V                                W+
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSV-------------------------------SWT 292

Query: 320 AMISGYAENNHPQEALKLFNEMQVC-GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           ++I G A N   +EA++LF  M+   G+ P ++T + ++ AC+H G++ +       + +
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRM-R 351

Query: 379 NAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNA 435
             +  + R+ +   ++D+ A+ G ++ A E  + M  + NV+ W +++ A  +HGD+   
Sbjct: 352 EEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDS--D 409

Query: 436 LIFFNKMKDESIDPN 450
           L  F +++   ++PN
Sbjct: 410 LAEFARIQILQLEPN 424



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGM-KPDKVTMLSVISACAHLGVLDQAQRI 372
           ++  W+ +I GYAE  +   A  L+ EM+V G+ +PD  T   +I A   +  +   + I
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H  + ++ FG  + V N+++ +YA CG + SA +VF++M  +++++W S+IN FA +G  
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
             AL  + +M  + I P+G T + +L AC+  G +  G+ +   M  +  +         
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI-KVGLTRNLHSSNV 262

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           ++DL+ R   + EA  L + M    N V W SL+    V+G
Sbjct: 263 LLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNG 302


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/708 (35%), Positives = 391/708 (55%), Gaps = 40/708 (5%)

Query: 23  SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY-------YALSIFS 75
           ++L H+ QT+A+  +L       ++LL+    T  +  T    ++Y       +AL +F 
Sbjct: 6   NALAHVIQTYAKTKRLRRGKQ-LHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFD 64

Query: 76  QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
            +P          I  +S + +   A++ F  M   G    +F+F   ++A A    +  
Sbjct: 65  TMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEM 124

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G Q+H L  K G GS+ FV + L  MY  CG + DA  +F++M  +D V W+ MIDGY +
Sbjct: 125 GKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK 184

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
            G F+E L  F++M    V  D+ VL   L AC       +G +VH  ++      D   
Sbjct: 185 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESD--- 241

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE-KD 314
                                       + V  A+   YS+AG +E A  +F    E ++
Sbjct: 242 ----------------------------IFVGNALTDMYSKAGDMESASNVFGIDSECRN 273

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           ++ ++ +I GY E    ++ L +F E++  G++P++ T  S+I ACA+   L+Q  ++H 
Sbjct: 274 VVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHA 333

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
            + K  F  D  V++ ++DMY KCG LE A + F+ +     I+W S+++ F  HG  ++
Sbjct: 334 QVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKD 393

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           A+ FF +M D  + PN +TFI +L  CSHAGLV+EG + F SM   Y + P  EHY C++
Sbjct: 394 AIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVI 453

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DL GRA  L+EA E +  MPF PN   W S + ACR+HG+ E+ + AA++L++L+P + G
Sbjct: 454 DLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSG 513

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
           ALVLLSNIYA +++W+DV  +R  M++  + K    S +++  + + F   D SH +   
Sbjct: 514 ALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSA 573

Query: 615 IYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIR 674
           IYEKL+ ++ ++K AGYVP   S  +D++D  K +++  HSE++A+ + LIS      I 
Sbjct: 574 IYEKLDXLLDQIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIGKPII 633

Query: 675 IVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + KNLRVC DCH+ IK +SKV  R+I++RD +RFHH+ DG CSC DYW
Sbjct: 634 VKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 169/384 (44%), Gaps = 66/384 (17%)

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           D   L+ ++   ++   L  G+ +H  +I         L + L+ MY+ CG +D A  LF
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           D +  +NLV  TAM+SG S                               +N+   EA++
Sbjct: 64  DTMPQRNLVSWTAMISGLS-------------------------------QNSKFSEAIR 92

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
            F  M++CG  P +    S I ACA LG ++  +++H    K   G +L V + + DMY+
Sbjct: 93  TFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYS 152

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KCG++  A +VFE M  ++ +SWT+MI+ ++  G+   AL+ F KM DE +  +      
Sbjct: 153 KCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCS 212

Query: 457 VLYACS-----------HAGLVDEGRE--IFA---------------SMTNEYNIPPKYE 488
            L AC            H+ +V  G E  IF                S +N + I  +  
Sbjct: 213 TLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECR 272

Query: 489 H---YGCMVDLFGRANLLREALEL---VETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           +   Y C++D +     + + L +   +      PN   + SL+ AC     +E      
Sbjct: 273 NVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLH 332

Query: 543 KQLLQLDPDHDGAL-VLLSNIYAK 565
            Q+++++ D D  +  +L ++Y K
Sbjct: 333 AQVMKINFDEDPFVSSILVDMYGK 356


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/608 (38%), Positives = 354/608 (58%), Gaps = 36/608 (5%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D F    L+  Y   G I + +  FD+M +RD V ++  I G+  N    E L LF+ M+
Sbjct: 88  DXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQ 147

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
               EP E  +  IL+A ++  +L YG+ +H  II  N   +  + + L  MYA CG ++
Sbjct: 148 REGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIE 207

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQ------------------------------- 299
            A+ LFD +  KNLV    M+SGY++ GQ                               
Sbjct: 208 QARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYC 267

Query: 300 ----VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
               V++AR +F +  EKD++CW+AM+ GYA+N   ++AL LFNEM +  ++PD  T+ S
Sbjct: 268 QCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSS 327

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           V+S+CA L  L   Q +H          +L V++A+IDMY+KCG ++ AR VF  M  RN
Sbjct: 328 VVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRN 387

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V+SW +MI   A +G  ++AL  F  M  +   P+ VTFIG+L AC H   +++G+E F 
Sbjct: 388 VVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFD 447

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           S++N++ + P  +HY CMV+L GR   + +A+ L++ M   P+ +IW +L++ C   G+I
Sbjct: 448 SISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDI 507

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
             AE AA+ L +LDP      ++LSN+YA   RW+DV  +R  MK + + K    S IE+
Sbjct: 508 VNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEI 567

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
           +NEV+ F + DR+H +++ IYEKLN +I +L+  G+ P+ +  L D+ ++EK + I +HS
Sbjct: 568 DNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHS 627

Query: 656 EKLALCYGLISSKKD-SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDG 714
           EKLAL +GLI      S IRI+KN+R+C DCH F+K  S++  R+I++RD  RFHH+  G
Sbjct: 628 EKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTG 687

Query: 715 VCSCKDYW 722
            CSC D W
Sbjct: 688 KCSCNDNW 695



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 199/401 (49%), Gaps = 37/401 (9%)

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
           + F ++P   S   N  I   S +  P+ +L++F +M  EG     ++   IL A A+  
Sbjct: 110 ATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLL 169

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
            L  G Q+HG      F  + F+   L  MY  CG+I  AR +FD ++ +++V W++MI 
Sbjct: 170 DLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMIS 229

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA---CSR------------------ 230
           GY +NG  ++ + L  +M++S   PD++ +S I++A   C R                  
Sbjct: 230 GYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVC 289

Query: 231 -----AGNLSYGEAVHEFIIDNNVAL-----DAHLQSTLITMYANCGCMDMAKGLFDKVL 280
                 G    G      ++ N + L     D++  S++++  A    +   + +  K +
Sbjct: 290 WTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSI 349

Query: 281 L----KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           L     NL+VS+A++  YS+ G ++DAR +F+ M  ++++ W+AMI G A+N H ++AL+
Sbjct: 350 LAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALE 409

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI-DKNAFGGDLRVNNAIIDMY 395
           LF  M     KPD VT + ++SAC H   ++Q Q     I +++     L     ++++ 
Sbjct: 410 LFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLL 469

Query: 396 AKCGSLESAREVFERMRRR-NVISWTSMINAFAIHGDARNA 435
            + G +E A  + + M    + + W+++++  +  GD  NA
Sbjct: 470 GRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNA 510



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 137/224 (61%)

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           D+ L + L+ +YA  G +  A+ LFDK+L ++     A++S Y+++G +++ +  FD+M 
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
            +D + ++  I+G++ N+ PQE+L+LF  MQ  G +P + T++S+++A A L  L   ++
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQ 176

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           IH  I    F G++ + NA+ DMYAKCG +E AR +F+ + ++N++SW  MI+ +A +G 
Sbjct: 177 IHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQ 236

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
               +   ++M+     P+ VT   ++ A    G VDE R +F+
Sbjct: 237 PEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFS 280


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/715 (34%), Positives = 400/715 (55%), Gaps = 46/715 (6%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS-----------L 67
           +S   ++ H+ QT+A+  +L+     +   L  +L+    LP T  S+           L
Sbjct: 72  LSDTKTVAHLIQTYARTKELN-----KGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGEL 126

Query: 68  YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
            Y + +F ++           I   + + R + AL  F +M  EG    +F+   +L+A 
Sbjct: 127 DYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQAC 186

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
                +  G QVH L  K GFG + FV + L  MY  CG++ DA   F++M  +D V W+
Sbjct: 187 TSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWT 246

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
            MIDG+ +NG F + L  + +M   +V  D+ VL   LSACS     S+G+++H  I+  
Sbjct: 247 SMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKL 306

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
               +  + + L  MY+  G M  A  +F         + +  +S               
Sbjct: 307 GFEYETFIGNALTDMYSKSGDMVSASNVFQ--------IHSDCIS--------------- 343

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
                  ++  +A+I GY E +  ++AL  F +++  G++P++ T  S+I ACA+   L+
Sbjct: 344 -------IVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLE 396

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
              ++H  + K  F  D  V++ ++DMY KCG  + + ++F+ +   + I+W +++  F+
Sbjct: 397 HGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFS 456

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            HG  RNA+  FN M    + PN VTF+ +L  CSHAG+V++G   F+SM   Y + PK 
Sbjct: 457 QHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKE 516

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
           EHY C++DL GRA  L+EA + +  MPF PNV  W S + AC++HG++E A+FAA +L++
Sbjct: 517 EHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMK 576

Query: 548 LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
           L+P++ GA VLLSNIYAK+K+W+DV  LRK +K+  + K    S +++ N+ + F   D 
Sbjct: 577 LEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDW 636

Query: 608 SHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS 667
           SH Q  +IYEKL+ ++ ++K  GYVP   S L+D++D  K +++ +HSE++A+ + L++ 
Sbjct: 637 SHPQKKEIYEKLDNLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHSERIAVAFSLLTC 696

Query: 668 KKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
                I + KNLRVC DCH+ +K +SKV  R I++RD +RFHH+ +G CSC DYW
Sbjct: 697 PTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSCGDYW 751


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/576 (40%), Positives = 346/576 (60%), Gaps = 31/576 (5%)

Query: 147  GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLF 206
            G   D  + T    MY +  +I  A ++F+ +       W+VMI G+  +G F   L L+
Sbjct: 747  GLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELY 806

Query: 207  EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
             +M    ++PD+      L +C+   +L  G+ +H+ ++                    C
Sbjct: 807  SKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLV-------------------CC 847

Query: 267  GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
            GC +            +L V  A+V  Y++ G +E ARL+FD+M  +DL+ W++MISGYA
Sbjct: 848  GCSN------------DLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYA 895

Query: 327  ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
             N +  E L  F+ M+  G+ P++V++LSV+ AC +LG L + +  H Y+ +  F  D+ 
Sbjct: 896  HNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDIL 955

Query: 387  VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
            V  AI+DMY+KCGSL+ AR +F+    ++++ W++MI ++ IHG  R A+  F++M    
Sbjct: 956  VATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAG 1015

Query: 447  IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
            + P+ VTF  VL ACSH+GL++EG+  F  MT E+ I  K  +Y CMVDL GRA  L EA
Sbjct: 1016 VRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEA 1075

Query: 507  LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566
            ++L+E MP  P+  IWGSL+ ACR+H  ++LAE  A  L  LDP H G  VLLSNIYA  
Sbjct: 1076 VDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAK 1135

Query: 567  KRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL 626
             RW +V ++RK M  RG  K +  S +E +N+V++F   DRSH Q +++Y KL E+ + +
Sbjct: 1136 SRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPM 1195

Query: 627  KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCH 686
            K  GYVP     L D+E+E K   + +HSE+LA+ +GLI++   + +RI KNLR+C DCH
Sbjct: 1196 KHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCH 1255

Query: 687  NFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            N IKL+SK+  R I++RD  RFH ++DGVCSC DYW
Sbjct: 1256 NAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/574 (34%), Positives = 317/574 (55%), Gaps = 33/574 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKM-LNEGLTIDRFSFPPILKAIA 128
           AL +F +   P + +    +     ++ P+ AL +F +M + + + +D  +   ++ A A
Sbjct: 158 ALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACA 217

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           +   +  G  VHGL  +  F  D  +   L+ +Y   G    A  +F KM  +D++ WS 
Sbjct: 218 QLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWST 277

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI  Y  N   +E LNLF EM     EP+ + +   L AC+ + NL  G+ +H+  +   
Sbjct: 278 MIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKG 337

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
             LD  + + LI MY  C C D A  L                               F 
Sbjct: 338 FELDFSVSTALIDMYMKCSCPDEAVDL-------------------------------FQ 366

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           ++ +KD++ W A++SGYA+N    +++ +F  M   G++PD V ++ +++A + LG+  Q
Sbjct: 367 RLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQ 426

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
           A  +H Y+ ++ F  ++ V  ++I++Y+KCGSL  A ++F+ M  R+V+ W+SMI A+ I
Sbjct: 427 ALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGI 486

Query: 429 HGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
           HG    AL  F++M K+ ++ PN VTF+ +L ACSHAGLV+EG +IF  M ++Y + P  
Sbjct: 487 HGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDS 546

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
           EH+G MVDL GR   L +A++++  MP      +WG+L+ ACR+H  IE+ E AAK L  
Sbjct: 547 EHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFW 606

Query: 548 LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
           LDP H G  +LLSNIYA D +W +V ELR  +KERG+ K    S +E+   V+ FL +DR
Sbjct: 607 LDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDR 666

Query: 608 SHKQTDQIYEKLNEVISELKPAGYVPDIHSALVD 641
            H  + +IYE L ++ +++    Y+PD+   L D
Sbjct: 667 FHPDSQKIYELLRKLEAQMGKEVYIPDLDFLLHD 700



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 152/520 (29%), Positives = 251/520 (48%), Gaps = 51/520 (9%)

Query: 21  SCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAP 80
           +C++   + Q H+Q+ K    H +          T  +      +SL  A  +F + P P
Sbjct: 13  ACNNGRSVSQLHSQVFKTGILHDT-------FFATKLNSLYAKCASLQAARKVFDETPHP 65

Query: 81  PSRVSNKFIRAISWSHRPKHALKVF-LKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQV 139
              + N  +R+     + +  L++F L +   G   D F+ P  LKA A    L  G  +
Sbjct: 66  NVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVI 125

Query: 140 HGLGTKLG-FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           HG   K    GSD FV + LV +Y  CG++ +A  +F++    D V W+ M+ GY QN  
Sbjct: 126 HGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNND 185

Query: 199 FDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
            +E L LF +M M + V  D + L  ++SAC++  N+  G  VH  +I      D  L +
Sbjct: 186 PEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVN 245

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
           +L+ +YA  GC  +A  LF K                               M EKD+I 
Sbjct: 246 SLLNLYAKTGCEKIAANLFSK-------------------------------MPEKDVIS 274

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           WS MI+ YA N    EAL LF+EM     +P+ VT++S + ACA    L++ ++IH    
Sbjct: 275 WSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAV 334

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
              F  D  V+ A+IDMY KC   + A ++F+R+ +++V+SW ++++ +A +G A  ++ 
Sbjct: 335 WKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMG 394

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY----GCM 493
            F  M  + I P+ V  + +L A S  G+  +     A   + Y +   +         +
Sbjct: 395 VFRNMLSDGIQPDAVAVVKILAASSELGIFQQ-----ALCLHGYVVRSGFNSNVFVGASL 449

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           ++L+ +   L +A++L + M    +VVIW S++AA  +HG
Sbjct: 450 IELYSKCGSLGDAVKLFKGM-IVRDVVIWSSMIAAYGIHG 488



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 129/426 (30%), Positives = 206/426 (48%), Gaps = 40/426 (9%)

Query: 8    TKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSL 67
            +K  T+ ++    + S  + +K+THA+I      + S+       +LT F++   + + +
Sbjct: 716  SKYKTIGSAPGTDTISCFSCLKKTHAKIFAYGLQYDSR-------ILTKFAIMYVSFNRI 768

Query: 68   YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
              A  +F  IP P S + N  IR  +   R   +L+++ KM+ +GL  D+F+FP  LK+ 
Sbjct: 769  DAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSC 828

Query: 128  ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
            A    L  G  +H      G  +D FV   LV MY  CG I  ARL+FDKM+ RD+V W+
Sbjct: 829  AGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWT 888

Query: 188  VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
             MI GY  NG   E L  F+ M+ S V P+ + +  +L AC   G L  GE  H ++I  
Sbjct: 889  SMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQT 948

Query: 248  NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
                D  + + ++ MY+ CG +D+A+ LFD+   K+LV  +AM++ Y   G    A  +F
Sbjct: 949  GFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLF 1008

Query: 308  DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
            DQMV+                                G++P  VT   V+SAC+H G+L+
Sbjct: 1009 DQMVK-------------------------------AGVRPSHVTFTCVLSACSHSGLLE 1037

Query: 368  QAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINA 425
            + +    L  ++      L     ++D+  + G L  A ++ E M      S W S++ A
Sbjct: 1038 EGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGA 1097

Query: 426  FAIHGD 431
              IH +
Sbjct: 1098 CRIHNN 1103



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 131/266 (49%), Gaps = 12/266 (4%)

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
           +F   +L +   +T + S Y++   ++ AR +FD+    ++  W++ +  Y      +E 
Sbjct: 27  VFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEET 86

Query: 335 LKLFNEMQVC--GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAI 391
           L+LF+ M +C  G  PD  T+   + ACA L +L+  + IH +  KN   G D+ V +A+
Sbjct: 87  LRLFHLM-ICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSAL 145

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES---ID 448
           +++Y+KCG +  A +VFE  +R + + WTSM+  +  + D   AL  F++M       +D
Sbjct: 146 VELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLD 205

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
           P  VT + V+ AC+    V  G  +   +               +++L+ +    + A  
Sbjct: 206 P--VTLVSVVSACAQLLNVKAGSCVHG-LVIRREFDGDLPLVNSLLNLYAKTGCEKIAAN 262

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGE 534
           L   MP   +V+ W S M AC  + E
Sbjct: 263 LFSKMP-EKDVISW-STMIACYANNE 286



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 106/241 (43%), Gaps = 31/241 (12%)

Query: 102  LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM 161
            L  F  M + G+  +R S   +L A      L +G   H    + GF  D  V T ++ M
Sbjct: 904  LGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDM 963

Query: 162  YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221
            Y  CG +  AR +FD+ + +D+V WS MI  Y  +G   + ++LF++M  + V P  +  
Sbjct: 964  YSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTF 1023

Query: 222  SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
            + +LSACS +G L  G+   + + +                              + V+ 
Sbjct: 1024 TCVLSACSHSGLLEEGKMYFQLMTE------------------------------EFVIA 1053

Query: 282  KNLVVSTAMVSGYSRAGQVEDARLIFDQM-VEKDLICWSAMISGYAENNHPQEALKLFNE 340
            + L     MV    RAGQ+ +A  + + M VE D   W +++     +N+   A K+ + 
Sbjct: 1054 RKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADH 1113

Query: 341  M 341
            +
Sbjct: 1114 L 1114


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 255/718 (35%), Positives = 393/718 (54%), Gaps = 43/718 (5%)

Query: 9   KPLTLPTSTAISSCSS---LTHMKQTHAQILKLS-HSHHSQNSLLLKLLLTSFSLPTTTP 64
           KP  +  ++ +S+C+S   L   +Q H+ ++K    S       LL L +    + T   
Sbjct: 311 KPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKT--- 367

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
                A  +F         + N  + A         + ++F +M  +GL  ++F++P IL
Sbjct: 368 -----AHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSIL 422

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           +       L  G Q+H    K GF  + +V + L+ MY   GK+  A ++   ++  D+V
Sbjct: 423 RTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVV 482

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ +I GY Q+ LF E L  F+EM    ++ D +  S  +SAC+    L+ G  +H   
Sbjct: 483 SWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIH--- 539

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
                        + ++ Y+                 ++L +  A+VS Y+R G++++A 
Sbjct: 540 -----------AQSYVSGYS-----------------EDLSIGNALVSLYARCGRIKEAY 571

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
           L F+++  KD I W+ +ISG+A++ + ++ALK+F +M    ++    T  S +SA A++ 
Sbjct: 572 LEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIA 631

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            + Q ++IH  I K  F  D+ V+NA+I  YAKCGS+E AR  F  M  +N +SW +MI 
Sbjct: 632 NIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMIT 691

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
            ++ HG    A+  F KMK     PN VTF+GVL ACSH GLV +G   F SM+ E+ + 
Sbjct: 692 GYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLV 751

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           PK  HY C+VDL  RA  L  A + +E MP  P+  IW +L++AC VH  +E+ EFAA+ 
Sbjct: 752 PKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQH 811

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           LL+L+P+     VLLSN+YA   +W    + R+ M+ RG+ KE   S IE+ N V+ F  
Sbjct: 812 LLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYV 871

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            DR H   D+IYE L E+  +    GY  D +S L D+E E+K   +  HSEKLA+ +GL
Sbjct: 872 GDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGL 931

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +S      I ++KNLRVC+DCH++IK VSK+  R I++RD  RFHH++ G+CSCKDYW
Sbjct: 932 LSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 148/586 (25%), Positives = 262/586 (44%), Gaps = 47/586 (8%)

Query: 10  PLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFS-LPTTTPS 65
           P     S+ +S C+ +      +Q HA + K   S     + +   L+T +S +P     
Sbjct: 211 PTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSS---LETYVCNALVTLYSRMPNFVS- 266

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
               A  +FS++ +      N  I  ++       AL++F KM  + L  D  +   +L 
Sbjct: 267 ----AEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLS 322

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A A    L +G Q+H    K G  SD  V+  L+ +Y  C  I  A  MF      ++V 
Sbjct: 323 ACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVL 382

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+VM+  + +     E   +F +M++  + P++     IL  C+  G L  GE +H  +I
Sbjct: 383 WNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVI 442

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
                 + ++ S LI MYA                               + G+++ A +
Sbjct: 443 KTGFQFNVYVCSVLIDMYA-------------------------------KHGKLDTAHV 471

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           I   + E D++ W+A+ISGYA++N   EALK F EM   G++ D +   S ISACA +  
Sbjct: 472 ILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQA 531

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L+Q ++IH     + +  DL + NA++ +YA+CG ++ A   FE++  ++ ISW  +I+ 
Sbjct: 532 LNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISG 591

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
           FA  G   +AL  F +M    ++ +  TF   + A ++   + +G++I A M  +     
Sbjct: 592 FAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHA-MIIKRGFDS 650

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
             E    ++  + +   + +A      MP   N V W +++     HG    A    +++
Sbjct: 651 DIEVSNALITFYAKCGSIEDARREFCEMP-EKNDVSWNAMITGYSQHGYGNEAVNLFEKM 709

Query: 546 LQLD--PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
            Q+   P+H   + +LS         + +G      KE G++ + A
Sbjct: 710 KQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPA 755



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 209/423 (49%), Gaps = 36/423 (8%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           M + G+  +  ++  +L     +  L+E  ++HG   KLGFG++  +   LV +Y A G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
           +     +F+ M  R +  W  +I G+ +  + + VL+LF  M   NV P E+  + +L A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 228 CS--RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
           CS  R G + Y E +H  II +                                LL + +
Sbjct: 121 CSGHRIG-IRYAEQIHARIICHG-------------------------------LLCSPI 148

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
           +S  ++  Y++ G +  AR +FD +  KD + W AMISG+++N + +EA+ LF EM   G
Sbjct: 149 ISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAG 208

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
           + P      SV+S C  + + D  +++H  + K     +  V NA++ +Y++  +  SA 
Sbjct: 209 IFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAE 268

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
           +VF +M+ ++ +S+ S+I+  A  G +  AL  F KMK + + P+ VT   +L AC+  G
Sbjct: 269 KVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNG 328

Query: 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
            + +G ++  S   +  I       G ++DL+   + ++ A E+  T     NVV+W  +
Sbjct: 329 ALCKGEQLH-SYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQ-TENVVLWNVM 386

Query: 526 MAA 528
           + A
Sbjct: 387 LVA 389



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 129/541 (23%), Positives = 246/541 (45%), Gaps = 48/541 (8%)

Query: 4   LSQPTKPLTLPTSTAISSCSS----LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL 59
           + +   P  +  ++ + +CS     + + +Q HA+I+         + LL   ++++  +
Sbjct: 103 IEENVSPTEISFASVLRACSGHRIGIRYAEQIHARII--------CHGLLCSPIISNPLI 154

Query: 60  PTTTPSSLYY-ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
                + L   A  +F  +    S      I   S +   + A+ +F +M   G+    +
Sbjct: 155 GLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPY 214

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
            F  +L    + +    G Q+H L  K G   + +V   LV +Y      + A  +F KM
Sbjct: 215 VFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKM 274

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
             +D V ++ +I G  Q G  D  L LF +MK   ++PD + ++ +LSAC+  G L  GE
Sbjct: 275 QSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGE 334

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
            +H ++I   ++ D  ++  L+ +Y NC  +  A  +F     +N+V+   M+  + +  
Sbjct: 335 QLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGK-- 392

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
                    D + E                     + ++F +MQ+ G+ P++ T  S++ 
Sbjct: 393 --------LDNLSE---------------------SFRIFRQMQIKGLIPNQFTYPSILR 423

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
            C  +G LD  ++IH  + K  F  ++ V + +IDMYAK G L++A  +   +   +V+S
Sbjct: 424 TCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVS 483

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA-SM 477
           WT++I+ +A H     AL  F +M +  I  + + F   + AC+    +++GR+I A S 
Sbjct: 484 WTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSY 543

Query: 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537
            + Y+      +   +V L+ R   ++EA    E +  A + + W  L++     G  E 
Sbjct: 544 VSGYSEDLSIGN--ALVSLYARCGRIKEAYLEFEKID-AKDSISWNGLISGFAQSGYCED 600

Query: 538 A 538
           A
Sbjct: 601 A 601


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/517 (43%), Positives = 331/517 (64%), Gaps = 3/517 (0%)

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           +++S   P+      +  AC     +  GE +    I   +  +  + + +I MYAN G 
Sbjct: 23  VRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGL 82

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           +D A+ +FD  L ++L     M+ GY  +G++  A+ +FD+M E+D++ W+ +I+GY + 
Sbjct: 83  VDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQV 142

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
              +EAL LF+EM   G  P++ T+ S ++ACA+L  LDQ + IH+YIDK+    + R+ 
Sbjct: 143 GCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLL 202

Query: 389 NAIIDMYAKCGSLESAREVF--ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
            +++DMYAKCG ++ A +VF  E   +  V  W +MI  +A+HG ++ A+  F +MK E 
Sbjct: 203 ASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEK 262

Query: 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
           + PN VTF+ +L ACSH  LV+EGR  F SM + Y I P+ EHYGCMVDL GR+ LL+EA
Sbjct: 263 VSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEA 322

Query: 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566
            E V  MP AP+  IWG+L+ ACR+H +IE  +   K + +LD DH G  VLL+N+Y+  
Sbjct: 323 EETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSAS 382

Query: 567 KRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL 626
            +W +   +R+ ++  G  K   CS IE+N   ++FL  DRSH QT Q+Y  L+E+ ++L
Sbjct: 383 GQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKL 442

Query: 627 KPAGYVPDIHSALVDLEDEEKREVILW-HSEKLALCYGLISSKKDSCIRIVKNLRVCEDC 685
           K AGYVP+    L+D++DEE +E  L  HSEKLA+ +GLI++   + IRIVKNLRVC DC
Sbjct: 443 KNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADC 502

Query: 686 HNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           H   K +SKVY REI++RDR R+HH+KDG CSCKDYW
Sbjct: 503 HEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 186/412 (45%), Gaps = 72/412 (17%)

Query: 100 HALKVFLKMLN-EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           +++++FL M+   G   +R++F  + KA     G+LEG Q+     K+G  S+ FV   +
Sbjct: 14  NSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAM 73

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMID--------------------------- 191
           + MY   G + +AR +FD    +D+  W++MI                            
Sbjct: 74  IRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWT 133

Query: 192 ----GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
               GY Q G F E L+LF EM  +   P+E  L+  L+AC+    L  G  +H +I  +
Sbjct: 134 TIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKS 193

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLF-DKVLLKNLVVS-TAMVSGYSRAGQVEDARL 305
            + ++  L ++L+ MYA CG +D A  +F D+  LK  V    AM+ GY+  G+      
Sbjct: 194 EIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGK------ 247

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
                                     +EA+ LF +M+V  + P+KVT +++++AC+H G 
Sbjct: 248 -------------------------SKEAIDLFEQMKVEKVSPNKVTFVALLNACSH-GK 281

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESARE-VFERMRRRNVISWTSM 422
           L +  R +     +++G +  + +   ++D+  + G L+ A E VF      +   W ++
Sbjct: 282 LVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGAL 341

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREI 473
           + A  IH D          +K+   D  G    +  LY+ S  G  DE + +
Sbjct: 342 LGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSAS--GQWDEAKAV 391



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 2/135 (1%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           K AL +F +ML  G   + F+    L A A    L +G  +H    K     +  +   L
Sbjct: 146 KEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASL 205

Query: 159 VGMYGACGKI-LDARLMFDKMSYR-DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
           + MY  CG+I   A++  D+   +  + PW+ MI GY  +G   E ++LFE+MK+  V P
Sbjct: 206 LDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSP 265

Query: 217 DEMVLSKILSACSRA 231
           +++    +L+ACS  
Sbjct: 266 NKVTFVALLNACSHG 280


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/606 (39%), Positives = 364/606 (60%), Gaps = 39/606 (6%)

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQT--GLVGMYGACGKILDARLMFDKMS 179
           PIL  I++   L E MQ+     K       FV               +  AR +F+ MS
Sbjct: 32  PIL-LISKCNSLRELMQIQAYAIKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMS 90

Query: 180 YRDIVPWSVMIDGY--FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
             DIV ++ M  GY  F N L  EV +LF E+    + PD      +L AC+ A  L  G
Sbjct: 91  EPDIVIFNSMARGYSRFTNPL--EVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEG 148

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
             +H                          C+ M  GL D     N+ V   +++ Y+  
Sbjct: 149 RQLH--------------------------CLSMKLGLDD-----NVYVCPTLINMYTEC 177

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
             V+ AR +FD++VE  ++C++AMI+GYA  N P EAL LF EMQ   +KP+++T+LSV+
Sbjct: 178 EDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVL 237

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
           S+CA LG LD  + IH Y  K++F   ++VN A+IDM+AKCGSL+ A  +FE+MR ++  
Sbjct: 238 SSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQ 297

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
           +W++MI A+A HG A  +++ F +M+ E++ P+ +TF+G+L ACSH G V+EGR+ F+ M
Sbjct: 298 AWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQM 357

Query: 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537
            +++ I P  +HYG MVDL   A  L +A E ++ +P +P  ++W  L+AAC  H  ++L
Sbjct: 358 VSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDL 417

Query: 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNN 597
           AE  ++++ +LD  H G  V+LSN+YA++K+W+ V  LRK MK+R  +K   CS IE+NN
Sbjct: 418 AEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNN 477

Query: 598 EVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL-VDLEDEEKREVILWHSE 656
            V+EF + D     T +++  L+E++ ELK +GYVPD    +  ++ D+EK   + +HSE
Sbjct: 478 VVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSE 537

Query: 657 KLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVC 716
           KLA+ +GL+++   + IR+VKNLRVC DCHN  KL+S ++ R++V RD  RFHH++DG C
Sbjct: 538 KLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVXRDVQRFHHFEDGKC 597

Query: 717 SCKDYW 722
           SC D+W
Sbjct: 598 SCGDFW 603



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 211/413 (51%), Gaps = 40/413 (9%)

Query: 3   TLSQPTKPLTLPTSTAI---SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL 59
           T ++ +K  T+ T   I   S C+SL  + Q  A  +K   SH    S + KL+  +F  
Sbjct: 17  TFTKHSKIDTVNTQNPILLISKCNSLRELMQIQAYAIK---SHIEDVSFVAKLI--NFCT 71

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
            + T SS+ YA  +F  +  P   + N   R  S    P     +F+++L +G+  D ++
Sbjct: 72  ESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYT 131

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           FP +LKA A A+ L EG Q+H L  KLG   + +V   L+ MY  C  +  AR +FD++ 
Sbjct: 132 FPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIV 191

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
              +V ++ MI GY +    +E L+LF EM+   ++P+E+ L  +LS+C+  G+L  G+ 
Sbjct: 192 EPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKW 251

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H++   ++      + + LI M+A CG +D A  +F+K+  K+    +AM+  Y+  G+
Sbjct: 252 IHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGK 311

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
            E + L+F++M               +EN                 ++PD++T L +++A
Sbjct: 312 AEKSMLMFERM--------------RSEN-----------------VQPDEITFLGLLNA 340

Query: 360 CAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           C+H G +++ ++     + K      ++   +++D+ +  G+LE A E  +++
Sbjct: 341 CSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKL 393


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/565 (40%), Positives = 349/565 (61%), Gaps = 8/565 (1%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+G +    KI++AR  FD M+ RD+V W+ +I GY Q+G  DE   LF+E  + +V   
Sbjct: 225 LLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTW 284

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
             ++S  +       N    EA   F  D     +    + ++  Y     M+MAK LFD
Sbjct: 285 TAMVSGYIQ------NRMVEEARELF--DKMPERNEVSWNAMLAGYVQGERMEMAKELFD 336

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
            +  +N+     M++GY++ G++ +A+ +FD+M ++D + W+AMI+GY+++ H  EAL+L
Sbjct: 337 VMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRL 396

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F +M+  G + ++ +  S +S CA +  L+  +++H  + K  +     V NA++ MY K
Sbjct: 397 FVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCK 456

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CGS+E A ++F+ M  ++++SW +MI  ++ HG    AL FF  MK E + P+  T + V
Sbjct: 457 CGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAV 516

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L ACSH GLVD+GR+ F +MT +Y + P  +HY CMVDL GRA LL +A  L++ MPF P
Sbjct: 517 LSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEP 576

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
           +  IWG+L+ A RVHG  ELAE AA ++  ++P++ G  VLLSN+YA   RW DVG+LR 
Sbjct: 577 DAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRV 636

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            M+++G+ K    S IE+ N+ + F   D  H + D+I+  L E+   +K AGYV     
Sbjct: 637 RMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSV 696

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
            L D+E+EEK  ++ +HSE+LA+ YG++       IR++KNLRVCEDCHN IK ++++  
Sbjct: 697 VLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITG 756

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           R I++RD  RFHH+KDG CSC DYW
Sbjct: 757 RLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 206/465 (44%), Gaps = 80/465 (17%)

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           +  Y   G+  +A  +F +M     V ++ MI GY +NG F+    LF+EM     E D 
Sbjct: 71  ISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMP----ERDL 126

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           +  + ++    R  NL     + E + + +V       +T+++ YA  GC+D A+ +FD+
Sbjct: 127 VSWNVMIKGYVRNRNLGKARELFEIMPERDVC----SWNTMLSGYAQNGCVDDARSVFDR 182

Query: 279 VLLKNLVVSTAMVSGYSRAGQVE-------------------------------DARLIF 307
           +  KN V   A++S Y +  ++E                               +AR  F
Sbjct: 183 MPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFF 242

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP------------------- 348
           D M  +D++ W+ +I+GYA++    EA +LF+E  V  +                     
Sbjct: 243 DSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARE 302

Query: 349 --DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG----GDLRVNNAIIDMYAKCGSLE 402
             DK+   + +S  A L    Q +R+ +   K  F      ++   N +I  YA+CG + 
Sbjct: 303 LFDKMPERNEVSWNAMLAGYVQGERMEM--AKELFDVMPCRNVSTWNTMITGYAQCGKIS 360

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            A+ +F++M +R+ +SW +MI  ++  G +  AL  F +M+ E    N  +F   L  C+
Sbjct: 361 EAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCA 420

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD-----LFGRANLLREALELVETMPFAP 517
               ++ G+++   +     +   YE  GC V      ++ +   + EA +L + M    
Sbjct: 421 DVVALELGKQLHGRL-----VKGGYET-GCFVGNALLLMYCKCGSIEEANDLFKEMA-GK 473

Query: 518 NVVIWGSLMAACRVH--GEIELAEFAAKQLLQLDPDHDGALVLLS 560
           ++V W +++A    H  GE+ L  F + +   L PD    + +LS
Sbjct: 474 DIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 123/290 (42%), Gaps = 33/290 (11%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++F ++P          I   S S     AL++F++M  EG  ++R SF   L   A 
Sbjct: 362 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCAD 421

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G Q+HG   K G+ +  FV   L+ MY  CG I +A  +F +M+ +DIV W+ M
Sbjct: 422 VVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTM 481

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY ++G  +  L  FE MK   ++PD+  +  +LSACS  G +  G            
Sbjct: 482 IAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKG------------ 529

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                 +    TM  + G M             N      MV    RAG +EDA  +   
Sbjct: 530 ------RQYFYTMTQDYGVM------------PNSQHYACMVDLLGRAGLLEDAHNLMKN 571

Query: 310 M-VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
           M  E D   W  ++   A   H    L      ++  M+P+   M  ++S
Sbjct: 572 MPFEPDAAIWGTLLG--ASRVHGNTELAETAADKIFAMEPENSGMYVLLS 619



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 166/354 (46%), Gaps = 40/354 (11%)

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGE-A 239
           DI  W+V I  Y + G  +E L +F+ M + S+V  + M+          +G L  GE  
Sbjct: 63  DIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMI----------SGYLRNGEFE 112

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +   + D     D    + +I  Y     +  A+ LF+ +  +++     M+SGY++ G 
Sbjct: 113 LARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGC 172

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           V+DAR +FD+M EK+ + W+A++S Y +N+  +EA  LF   +            +++S 
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRE----------NWALVSW 222

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVN-----NAIIDMYAKCGSLESAREVFERMRRR 414
              LG   + ++I   ++   F   + V      N II  YA+ G ++ AR++F+    +
Sbjct: 223 NCLLGGFVKKKKI---VEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ 279

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           +V +WT+M++ +  +     A   F+KM +     N V++  +L        ++  +E+F
Sbjct: 280 DVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELF 335

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
             M    N+      +  M+  + +   + EA  L + MP   + V W +++A 
Sbjct: 336 DVMPCR-NVST----WNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 383



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 135/300 (45%), Gaps = 30/300 (10%)

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           + D+  W+  IS Y       EAL++F  M     +   V+   +IS     G  + A++
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMP----RWSSVSYNGMISGYLRNGEFELARK 116

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           +   + +     DL   N +I  Y +  +L  ARE+FE M  R+V SW +M++ +A +G 
Sbjct: 117 LFDEMPER----DLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGC 172

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
             +A   F++M ++    N V++  +L A      ++E   +F S  N   +      + 
Sbjct: 173 VDDARSVFDRMPEK----NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVS-----WN 223

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           C++  F +   + EA +  ++M    +VV W +++      G+I+     A+QL    P 
Sbjct: 224 CLLGGFVKKKKIVEARQFFDSMN-VRDVVSWNTIITGYAQSGKID----EARQLFDESPV 278

Query: 552 HD-GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC-------SRIEMNNEVYEFL 603
            D      + + Y +++  ++  EL   M ER  +   A         R+EM  E+++ +
Sbjct: 279 QDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVM 338


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/695 (35%), Positives = 393/695 (56%), Gaps = 70/695 (10%)

Query: 97  RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG--MQVHGLGTKLGFGSDPFV 154
           +P   L+  +  L    T +  S+  +L    R+  +++   +Q H +   L   +D F+
Sbjct: 2   KPTPRLREAIDALYSRGTANSESYTRLLLQCVRSNDVVQAKRLQTH-MDLHLYQPTDTFL 60

Query: 155 QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG-------LFDEV----- 202
           Q  L+ +Y   G + DAR +FDKMS RD+  W+ M+  Y ++G       +FD++     
Sbjct: 61  QNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDA 120

Query: 203 -------------------LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
                              L  F  M+    E  +     +L ACS+  ++  G+ +H  
Sbjct: 121 VSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGR 180

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ---- 299
           I+  ++     + + L  MYA CG +D A+ LFD+++ KN+V   +M+SGY + GQ    
Sbjct: 181 IVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETC 240

Query: 300 -------------------------------VEDARLIFDQMVEKDLICWSAMISGYAEN 328
                                          +++A   F ++ EKD +CW+ M+ G A+N
Sbjct: 241 TKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQN 300

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
              ++AL LF EM +  ++PD  T+ SV+S+CA L  L Q Q +H          DL V+
Sbjct: 301 GKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVS 360

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           +A++DMY+KCG    A  VF+RM  RNVISW SMI  +A +G    AL  + +M  E++ 
Sbjct: 361 SALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLK 420

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
           P+ +TF+GVL AC HAGLV+ G+  F S++  + + P ++HY CM++L GRA  + +A++
Sbjct: 421 PDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVD 480

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
           L+++M F PN +IW +L++ CR++ ++   E AA+ L +LDP + G  ++LSNIYA   R
Sbjct: 481 LIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGR 540

Query: 569 WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
           W+DV  +R  MK   I K  A S IE++N+V++F+  DR+H +T+QIYE+LN +I +L+ 
Sbjct: 541 WKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQE 600

Query: 629 AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD-SCIRIVKNLRVCEDCHN 687
           +G+ PD +  L D+ +EEK + I +HSEKLAL + LI      + IRI+KN+RVC DCH 
Sbjct: 601 SGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHV 660

Query: 688 FIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           F+K VSK+  R I++RD  RFHH+ +G CSCKD W
Sbjct: 661 FMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 192/401 (47%), Gaps = 37/401 (9%)

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
           ++F Q+    +   N  I   S +     AL+ F++M  EG     ++   +L A ++  
Sbjct: 110 AVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLL 169

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
            +  G Q+HG       G   FV   L  MY  CG +  AR +FD+M  +++V W+ MI 
Sbjct: 170 DIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMIS 229

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA------------------------ 227
           GY QNG  +    LF EM+ S + PD++ +S ILSA                        
Sbjct: 230 GYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVC 289

Query: 228 -------CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
                  C++ G       +   ++  NV  D    S++++  A    +   + +  K +
Sbjct: 290 WTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAV 349

Query: 281 L----KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           +     +L+VS+A+V  YS+ G+  DA ++F +M+ +++I W++MI GYA+N    EAL 
Sbjct: 350 IFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALA 409

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK-NAFGGDLRVNNAIIDMY 395
           L+ EM    +KPD +T + V+SAC H G++++ Q     I K +         + +I++ 
Sbjct: 410 LYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLL 469

Query: 396 AKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNA 435
            + G ++ A ++ + M    N + W+++++   I+ D  N 
Sbjct: 470 GRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNG 510


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/702 (35%), Positives = 386/702 (54%), Gaps = 67/702 (9%)

Query: 53  LLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG 112
           LL+S+S     P        +F  +P       N  I A +       ++K +  ML  G
Sbjct: 81  LLSSYSKLACLPE----MERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNG 136

Query: 113 -LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA------- 164
              ++R +   +L   ++   +  G+QVHG   K GF S  FV + LV MY         
Sbjct: 137 PFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCA 196

Query: 165 ------------------------CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
                                   C +I D+R +F  M  +D + W+ MI G+ QNGL  
Sbjct: 197 RQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDR 256

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
           E ++LF EM++ N+E D+     +L+AC     L  G+ VH +II  +            
Sbjct: 257 EAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQ---------- 306

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
                                 N+ V +A+V  Y +   ++ A  +F +M  K+++ W+A
Sbjct: 307 ---------------------DNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTA 345

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           M+ GY +N + +EA+K+F +MQ  G++PD  T+ SVIS+CA+L  L++  + H     + 
Sbjct: 346 MLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSG 405

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
               + V+NA++ +Y KCGS+E +  +F  M   + +SWT++++ +A  G A   L  F 
Sbjct: 406 LISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFE 465

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500
            M      P+ VTFIGVL ACS AGLV +G +IF SM  E+ I P  +HY CM+DLF RA
Sbjct: 466 SMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRA 525

Query: 501 NLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560
             L EA + +  MPF+P+ + W SL+++CR H  +E+ ++AA+ LL+L+P +  + +LLS
Sbjct: 526 GRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLS 585

Query: 561 NIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLN 620
           +IYA   +W++V  LRK M+++G+ KE  CS I+  N+V+ F   D+S+  +DQIY +L 
Sbjct: 586 SIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELE 645

Query: 621 EVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLR 680
           ++  ++   GYVPD++S L D++D EK +++  HSEKLA+ +GLI       IR+VKNLR
Sbjct: 646 KLNYKMVQEGYVPDMNSVLHDVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLR 705

Query: 681 VCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           VC DCHN  K +SK+  REI++RD  RFH +KDG CSC D+W
Sbjct: 706 VCGDCHNATKYISKITQREILVRDAARFHLFKDGRCSCGDFW 747



 Score =  182 bits (461), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 205/413 (49%), Gaps = 44/413 (10%)

Query: 153 FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS 212
           F+   LV  Y    +I  AR +FD+M  R++  W+ ++  Y +     E+  +F  M   
Sbjct: 45  FLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTR 104

Query: 213 NV--------------------------------EPDEMVLSKILSACSRAGNLSYGEAV 240
           ++                                  + + LS +L   S+ G +  G  V
Sbjct: 105 DMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQV 164

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H  ++         + S L+ MY+  G +  A+  FD++  KN+V+   +++G  R  ++
Sbjct: 165 HGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRI 224

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
           ED+R +F  M EKD I W+AMI+G+ +N   +EA+ LF EM++  ++ D+ T  SV++AC
Sbjct: 225 EDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTAC 284

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
             +  L + +++H YI +  +  ++ V +A++DMY KC S++SA  VF +M  +NV+SWT
Sbjct: 285 GGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWT 344

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG-----REIFA 475
           +M+  +  +G +  A+  F  M++  I+P+  T   V+ +C++   ++EG     R + +
Sbjct: 345 AMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVS 404

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
            + +   +         +V L+G+   + ++  L   M +   V  W +L++ 
Sbjct: 405 GLISFITVS------NALVTLYGKCGSIEDSHRLFSEMSYVDEVS-WTALVSG 450



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 161/357 (45%), Gaps = 54/357 (15%)

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
           + +H  II      +  L + L++ YA    +  A+ +FD++  +NL     ++S YS+ 
Sbjct: 29  KKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKL 88

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG------MKPDKV 351
             + +   +F  M  +D++ W+++IS YA      +++K +N M   G      +    +
Sbjct: 89  ACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTM 148

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK-------------- 397
            +L+    C HLG+     ++H ++ K  F   + V + ++DMY+K              
Sbjct: 149 LILASKQGCVHLGL-----QVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEM 203

Query: 398 -----------------CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
                            C  +E +R++F  M+ ++ ISWT+MI  F  +G  R A+  F 
Sbjct: 204 PEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFR 263

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY----GCMVDL 496
           +M+ E+++ +  TF  VL AC     + EG+++ A     Y I   Y+        +VD+
Sbjct: 264 EMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHA-----YIIRTDYQDNIFVGSALVDM 318

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE--FAAKQLLQLDPD 551
           + +   ++ A  +   M    NVV W +++     +G  E A   F   Q   ++PD
Sbjct: 319 YCKCKSIKSAETVFRKMN-CKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPD 374



 Score = 43.1 bits (100), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 46/215 (21%)

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV--- 416
           C  L      ++IH +I K     ++ + N ++  YAK   +  AR VF++M +RN+   
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 417 ----------------------------ISWTSMINAFAIHG------DARNALIFFNKM 442
                                       +SW S+I+A+A  G       A N +++    
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPF 138

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREI-FASMTNEYNIPPKYEHYGCMVDLFGRAN 501
               I  + +  +     C H GL   G  + F   +  +   P       +VD++ +  
Sbjct: 139 NLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSP-------LVDMYSKTG 191

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           L+  A +  + MP   NVV++ +L+A       IE
Sbjct: 192 LVFCARQAFDEMP-EKNVVMYNTLIAGLMRCSRIE 225


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 256/719 (35%), Positives = 395/719 (54%), Gaps = 54/719 (7%)

Query: 58  SLPTTTPSSLYYALS-------IFSQIP--APPSRVSNKFIRAISWSHRPKHALKVFLKM 108
           ++  TT  + Y AL        IF+  P     S   N  I   + +     AL++F  M
Sbjct: 79  AIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAM 138

Query: 109 LNEGLTIDRFSFPPILKAIARAEGLLEGM-QVHGLGTKLGFGS-DPFVQTGLVGMYG--- 163
             +    D F+F  +L A+    G  +   Q+H    K G G     V   L+ +Y    
Sbjct: 139 RRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRA 198

Query: 164 -----ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN---------------------- 196
                +C  ++ AR +FD+M  RD + W+ MI GY +N                      
Sbjct: 199 SELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWN 258

Query: 197 ---------GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
                    G F E L L  +M+   ++ D++  + I+SAC+  G+   G+ VH +I+ N
Sbjct: 259 AMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKN 318

Query: 248 ----NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
               N +    + + LIT+Y     +D A+ +F  + ++N++   A++SGY  AG++E+A
Sbjct: 319 ELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEA 378

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
           +  F++M  K+L+  + MISG A+N    E LKLF +M++ G +P        ++AC+ L
Sbjct: 379 KSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVL 438

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
           G L+  +++H  +    +   L V NA+I MYAKCG +E+A  VF  M   +++SW SMI
Sbjct: 439 GALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMI 498

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
            A   HG    A+  F++M  E + P+ +TF+ VL ACSHAGLV++GR  F SM   Y I
Sbjct: 499 AALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGI 558

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
            P  +HY  MVDLF RA +   A  ++++MP  P   +W +L+A CR+HG ++L   AA+
Sbjct: 559 TPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAE 618

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
           QL +L P +DG  VLLSNIYA   RW +V ++RK M+++ + KE ACS IE+ N+V+ F+
Sbjct: 619 QLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFM 678

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYG 663
             D  H +   +Y  L ++  E+K  GY+PD    L D+E E+K   +  HSEKLA+ +G
Sbjct: 679 VDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFG 738

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           ++     + +R+ KN+R+C DCHN  K +SKV  REI++RDR RFHH+K+G CSC+DYW
Sbjct: 739 IMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  176 bits (446), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 204/430 (47%), Gaps = 49/430 (11%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFD--KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
           D   +T L+  Y A G +   R +F+   +  RD V ++ MI GY  NG     L LF  
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRA 137

Query: 209 MKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVA-LDAHLQSTLITMYA-- 264
           M+  +  PD+   + +LSA     GN      +H  ++   +  + + + + L+++Y   
Sbjct: 138 MRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKR 197

Query: 265 ------NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
                 +C  M  A+ LFD++  ++ +  T M++GY R   +  AR +F+ MVE     W
Sbjct: 198 ASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAW 257

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +AMISGY      QEAL L  +M+  G++ D +T  ++ISACA++G     +++H YI K
Sbjct: 258 NAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILK 317

Query: 379 NAFGGD----LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW--------------- 419
           N    +    L V+NA+I +Y K   ++ AR++F  M  RN+I+W               
Sbjct: 318 NELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEE 377

Query: 420 ----------------TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
                           T MI+  A +G     L  F +M+ +  +P    F G L ACS 
Sbjct: 378 AKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSV 437

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
            G ++ GR++ A + +             M+ ++ +  ++  A  +  TMP + ++V W 
Sbjct: 438 LGALENGRQLHAQLVH-LGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVSWN 495

Query: 524 SLMAACRVHG 533
           S++AA   HG
Sbjct: 496 SMIAALGQHG 505



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 168/370 (45%), Gaps = 56/370 (15%)

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
            + S   AVH  +I +      H  + L+ MY     +  A+ LF+++   + +  T ++
Sbjct: 27  ASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLI 86

Query: 292 SGYSRAGQVEDARLIFD--QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
           + Y   G +E  R IF+   +  +D + ++AMI+GYA N     AL+LF  M+    +PD
Sbjct: 87  TAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPD 146

Query: 350 KVTMLSVISACA-HLGVLDQAQRIHLYIDKNAFGG-DLRVNNAIIDMYAK--------CG 399
             T  SV+SA    +G   Q  ++H  + K   G     V NA++ +Y K        C 
Sbjct: 147 DFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCS 206

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGD-----------------ARNALI----- 437
           ++ SAR++F+ M +R+ ++WT+MI  +  + D                 A NA+I     
Sbjct: 207 AMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVH 266

Query: 438 ---------FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS-MTNEYNIPPKY 487
                       KM+   I  + +T+  ++ AC++ G    G+++ A  + NE N  P +
Sbjct: 267 CGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELN--PNH 324

Query: 488 EH----YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA----- 538
                    ++ L+ + N + EA ++   MP   N++ W ++++     G +E A     
Sbjct: 325 SFCLSVSNALITLYCKNNKVDEARKIFYAMP-VRNIITWNAILSGYVNAGRMEEAKSFFE 383

Query: 539 EFAAKQLLQL 548
           E   K LL L
Sbjct: 384 EMPVKNLLTL 393



 Score = 45.8 bits (107), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 14/207 (6%)

Query: 9   KPLTLPTSTAISSCS---SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +P     + A+++CS   +L + +Q HAQ++ L +    ++SL +   + S         
Sbjct: 422 EPCDFAFAGALTACSVLGALENGRQLHAQLVHLGY----ESSLSVGNAMISMYAKCGVVE 477

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           +   A S+F  +P+      N  I A+        A+++F +ML EG+  DR +F  +L 
Sbjct: 478 A---AESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLT 534

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQ--TGLVGMYGACGKILDARLMFDKMSYRDI 183
           A + A GL+E  + +       +G  P       +V ++   G    AR++ D M  +  
Sbjct: 535 ACSHA-GLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPG 593

Query: 184 VP-WSVMIDGYFQNGLFDEVLNLFEEM 209
            P W  ++ G   +G  D  +   E++
Sbjct: 594 APVWEALLAGCRIHGNMDLGIEAAEQL 620


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/622 (39%), Positives = 375/622 (60%), Gaps = 24/622 (3%)

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACG--KILDARLMFDKMS 179
           P +KA    + + E  QVH    K G   D  + T ++ +        I  A  +FD++ 
Sbjct: 20  PQIKA---CKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLP 76

Query: 180 YRDIVPWSVMIDGY--FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
            R+   W+ +I      Q+   D +L   + +  + VEP++     +L AC+    L+ G
Sbjct: 77  ERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEG 136

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF-------DKV--LLK------ 282
           + VH  ++   +  D  + + L+ MY  CG M+ A  LF       D V  L++      
Sbjct: 137 KQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGRE 196

Query: 283 -NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
            N+V+   MV GY+R G ++ AR +FD+M ++ ++ W+ MISGYA+N   +EA+++F+ M
Sbjct: 197 FNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRM 256

Query: 342 -QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
            Q+  + P++VT++SV+ A + LGVL+  + +HLY +KN    D  + +A++DMYAKCGS
Sbjct: 257 MQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGS 316

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E A +VFER+ + NVI+W ++I   A+HG A +   + ++M+   I P+ VT+I +L A
Sbjct: 317 IEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSA 376

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSHAGLVDEGR  F  M N   + PK EHYGCMVDL GRA  L EA EL+  MP  P+ V
Sbjct: 377 CSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDV 436

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           IW +L+ A ++H  I++   AA+ L+Q+ P   GA V LSN+YA    W  V  +R  MK
Sbjct: 437 IWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMK 496

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           +  I K+  CS IE++  ++EFL  D SH +   I+  L E+ ++L   G++PD    L+
Sbjct: 497 DMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQVLL 556

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
            ++++ K  V+ +HSEK+A+ +GLIS+   + + IVKNLR+CEDCH+ +KL+SK+Y R+I
Sbjct: 557 KMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYERKI 616

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           VIRDR RFHH++ G CSC DYW
Sbjct: 617 VIRDRKRFHHFEHGSCSCMDYW 638



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 134/469 (28%), Positives = 221/469 (47%), Gaps = 92/469 (19%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           I +C S+  +KQ HA ++K   +H   N++  ++L  S    T+    + YALS+F Q+P
Sbjct: 22  IKACKSMRELKQVHAFLVKTGQTH--DNAIATEILRLS---ATSDFRDIGYALSVFDQLP 76

Query: 79  APPSRVSNKFIRAISWSH-RPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLEG 136
                  N  IRA++ +  R   AL VF +ML+E  +  ++F+FP +LKA A    L EG
Sbjct: 77  ERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEG 136

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD-------------------------- 170
            QVHGL  K G   D FV T L+ MY  CG + D                          
Sbjct: 137 KQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGRE 196

Query: 171 ---------------------ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE- 208
                                AR +FD+M+ R +V W+VMI GY QNG + E + +F   
Sbjct: 197 FNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRM 256

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M+M +V P+ + L  +L A SR G L  G+ VH +   N + +D  L S L+ MYA CG 
Sbjct: 257 MQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGS 316

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           ++ A  +F+++   N++                                W+A+I G A +
Sbjct: 317 IEKAIQVFERLPQNNVIT-------------------------------WNAVIGGLAMH 345

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK-NAFGGDLRV 387
               +     + M+ CG+ P  VT ++++SAC+H G++D+ +    + D  N+ G   ++
Sbjct: 346 GKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRS--FFNDMVNSVGLKPKI 403

Query: 388 NN--AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDAR 433
            +   ++D+  + G LE A E+   M  + + + W +++ A  +H + +
Sbjct: 404 EHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIK 452


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/617 (37%), Positives = 363/617 (58%), Gaps = 33/617 (5%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           M  +G  I    +  +L        + EG +VH    K  +    ++ T L+ +Y  C  
Sbjct: 1   MAIQGPEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC 60

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
           +  AR +FD+M  R++V W+ MI GY Q G   E L+LF +M  S+ EP+E   + +LS+
Sbjct: 61  LGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSS 120

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           C+       G  +H  I   N      + S+L+ MYA                       
Sbjct: 121 CTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYA----------------------- 157

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
                   +AG++ +AR +F+ + E+D++  +A+ISGYA+    +EAL+LF  +Q  GM 
Sbjct: 158 --------KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMS 209

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
            + VT  S+++A + L  LD  +++H ++ +      + + N++IDMY+KCG+L  AR++
Sbjct: 210 SNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKI 269

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGL 466
           F  M  R VISW +M+  ++ HG     +  F  M++E+ + P+ VTF+ VL  CSH GL
Sbjct: 270 FNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGL 329

Query: 467 VDEGREIFASMTNEYN-IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
            D+G E+F  M N  + I    EHYGC++DL GRA  + EA EL++ MPF P   IWGSL
Sbjct: 330 EDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSL 389

Query: 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585
           + ACRVH    + EF   +LL+++P++ G  V+LSN+YA   RW+DV  +R+ M E+ ++
Sbjct: 390 LGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVI 449

Query: 586 KERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDE 645
           KE   S IE++  ++ F  +DRSH + ++++ K+ E++ + K +GYVPD    L D+++E
Sbjct: 450 KEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVDEE 509

Query: 646 EKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDR 705
           +K +++L HSEKLAL +GLIS+ +   +R++KNLR+C DCHNF K VSKVY R++ IRD+
Sbjct: 510 QKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQVSIRDK 569

Query: 706 TRFHHYKDGVCSCKDYW 722
            RFHH   G+CSC DYW
Sbjct: 570 NRFHHVAGGICSCGDYW 586



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 164/338 (48%), Gaps = 39/338 (11%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL +F++ML      + F+F  +L +     G   G Q+H    K  + +  FV + L+ 
Sbjct: 95  ALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLD 154

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY   G+I +AR +F+ +  RD+V  + +I GY Q GL +E L LF  ++   +  + + 
Sbjct: 155 MYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVT 214

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
            + +L+A S    L +G+ VH  ++   +     LQ++LI MY+ CG ++ A+ +F+ + 
Sbjct: 215 YASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMP 274

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
           ++ ++   AM+ GYS+ G+  +   +F  M E++ +                        
Sbjct: 275 VRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKV------------------------ 310

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD-----LRVNNAIIDMY 395
                 KPD VT L+V+S C+H G+ D+   +    D+   GGD     +     +ID+ 
Sbjct: 311 ------KPDSVTFLAVLSGCSHGGLEDKGLEM---FDEMMNGGDEIEAGIEHYGCVIDLL 361

Query: 396 AKCGSLESAREVFERMRRRNVIS-WTSMINAFAIHGDA 432
            + G +E A E+ ++M      + W S++ A  +H + 
Sbjct: 362 GRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNT 399



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 108/234 (46%), Gaps = 13/234 (5%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHH-SQNSLLLKLLLTSFSL 59
           L   T+P     +T +SSC+  +     +Q H+ I K ++ +H    S LL +       
Sbjct: 103 LRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMY------ 156

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
                  ++ A  +F  +P          I   +     + AL++F ++  EG++ +  +
Sbjct: 157 --AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVT 214

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +  +L A++    L  G QVH    +        +Q  L+ MY  CG +  AR +F+ M 
Sbjct: 215 YASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMP 274

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAG 232
            R ++ W+ M+ GY ++G   EV+ LF+ M+  N V+PD +    +LS CS  G
Sbjct: 275 VRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGG 328


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/593 (38%), Positives = 362/593 (61%), Gaps = 11/593 (1%)

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
           +Q+H    + G    P +   L   Y + G +  +  +F +    ++  W+ +I+ +   
Sbjct: 40  LQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHF 99

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
            LF   L+ + +M    ++P+   LS +L AC+    L    AVH   I   ++   ++ 
Sbjct: 100 DLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAIKFGLSSHLYVS 155

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           + L+  YA  G +  A+ LFD +  ++LV  TAM++ Y++ G + +AR++F+ M  KD++
Sbjct: 156 TGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVV 215

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCG-------MKPDKVTMLSVISACAHLGVLDQA 369
           CW+ MI GYA++  P EAL  F +M +         ++P+++T+++V+S+C  +G L+  
Sbjct: 216 CWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECG 275

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + +H Y++ N    ++RV  A++DMY KCGSLE AR+VF+ M  ++V++W SMI  + IH
Sbjct: 276 KWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIH 335

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G +  AL  F++M    + P+ +TF+ VL AC+HAGLV +G E+F SM + Y + PK EH
Sbjct: 336 GFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEH 395

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           YGCMV+L GRA  ++EA +LV +M   P+ V+WG+L+ ACR+H  + L E  A+ L+   
Sbjct: 396 YGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNG 455

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
               G  VLLSN+YA  + W  V ++R  MK  G+ KE  CS IE+ N V+EF+  DR H
Sbjct: 456 LASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRH 515

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
            ++  IY  L ++   LK   Y P   + L D+ ++EK + +  HSEKLAL +GLIS+  
Sbjct: 516 PRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSP 575

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + I+IVKNLRVC DCH  +K++SK+  R+I++RDR RFHH+++G CSC+DYW
Sbjct: 576 GAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 207/456 (45%), Gaps = 88/456 (19%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS--SLYYALSIFSQ 76
           I +  S  H+ Q HA +L+    HH          + +F L  +  S   L++++++F +
Sbjct: 30  IDNSKSTHHLLQIHAALLRRGLHHHP---------ILNFKLQRSYASLGHLHHSVTLFHR 80

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
            P P   +    I A +      HAL  + +ML   +  + F+   +LKA      L   
Sbjct: 81  TPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPA 136

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL--------------------------- 169
             VH    K G  S  +V TGLV  Y   G +                            
Sbjct: 137 RAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKH 196

Query: 170 ----DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE-------MKMSNVEPDE 218
               +AR++F+ M  +D+V W+VMIDGY Q+G  +E L  F +            V P+E
Sbjct: 197 GMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNE 256

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           + +  +LS+C + G L  G+ VH ++ +N + ++  + + L+ MY  CG ++ A+ +FD 
Sbjct: 257 ITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDV 316

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +  K++V   +M+ GY                           I G+++     EAL+LF
Sbjct: 317 MEGKDVVAWNSMIMGYG--------------------------IHGFSD-----EALQLF 345

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYA 396
           +EM   G+KP  +T ++V++ACAH G++ +   +   + K+ +G + +V +   ++++  
Sbjct: 346 HEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSM-KDGYGMEPKVEHYGCMVNLLG 404

Query: 397 KCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD 431
           + G ++ A ++   M    + + W +++ A  IH +
Sbjct: 405 RAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSN 440


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/692 (34%), Positives = 389/692 (56%), Gaps = 70/692 (10%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL +F +M   G+  + ++F   L+A      +  G  +H +  K    +D +V   L+ 
Sbjct: 235 ALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIA 294

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG++ DA  +F  M ++D V W+ ++ G  QN ++ + +N F++M+ S  +PD++ 
Sbjct: 295 MYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVS 354

Query: 221 LSKILSACSRAGNLSYGEAVHEFII----DNNVALDAHL--------------------- 255
           +  +++A  R+ NL  G  VH + I    D+N+ +   L                     
Sbjct: 355 VLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMP 414

Query: 256 ------QSTLITMYANCGCMDMAKGLFDKVLLK--------------------------- 282
                  +T+I  YA   C   A  L  KV L+                           
Sbjct: 415 EKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKE 474

Query: 283 -----------NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
                      ++++  A+V+ Y     V+ AR +F+ +  KD++ W++MI+    N   
Sbjct: 475 IHGYVLKGGLADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLA 534

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
            EAL+LFN +    ++PD +T++SV+ A A L  L + + IH ++ +  F  +  + N++
Sbjct: 535 IEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSL 594

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           +DMYA+CG++E+AR +F  +++R++I WTSMINA  +HG  ++A+  F+KM DE++ P+ 
Sbjct: 595 VDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDH 654

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
           +TF+ +LYACSH+GLV EG++ F  M NEY + P  EHY C+VDL  R+N L EA   V 
Sbjct: 655 ITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVR 714

Query: 512 TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
            MP  P+  +W +L+ ACR+H   +L E AAK+LLQL+ ++ G  VL+SN +A D RW D
Sbjct: 715 NMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWND 774

Query: 572 VGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK-PAG 630
           V E+R  MK   + K+  CS IE+ N+++ F+  D+SH Q + IY KL +    LK   G
Sbjct: 775 VEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGG 834

Query: 631 YVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIK 690
           Y         D+ +EEK +++  HSE+LAL YGL+ + K +C+RI KNLR+C+DCH F K
Sbjct: 835 YRAQTKLVFHDVCEEEKTQMLYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFFK 894

Query: 691 LVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + S++  R +V+RD +RFHH++ G+CSC D+W
Sbjct: 895 IASEISQRTLVVRDASRFHHFERGLCSCGDFW 926



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 157/564 (27%), Positives = 265/564 (46%), Gaps = 54/564 (9%)

Query: 10  PLTLPTSTAISSCSS---LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           PL    S A+  C+S   L   +Q HA  LK      +QN L    L T F        S
Sbjct: 44  PLQQAYSQALELCASHKALPQGQQLHAHFLK------TQNYLDSVFLDTKFVHMYGKCGS 97

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
            Y A+ +F ++        N  I A   + R   A++++ +M   G+++D F+FP +LKA
Sbjct: 98  FYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKA 157

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK--MSYRDIV 184
               +    G ++HG+  K G+G   FV   L+ MY  CG +  AR++FD   M   D V
Sbjct: 158 CGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPV 217

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ +I  +   G   E L+LF  M+   VE +       L AC     +  G  +H  I
Sbjct: 218 SWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVI 277

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           + +N   D +                               VS A+++ Y+  GQ+EDA 
Sbjct: 278 LKSNHFTDVY-------------------------------VSNALIAMYANCGQMEDAE 306

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            +F  M+ KD + W+ ++SG  +N+   +A+  F +MQ  G KPD+V++L++I+A     
Sbjct: 307 RVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSA 366

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L     +H Y  K+    ++ + N++IDMY KC  ++     FE M  +++ISWT++I 
Sbjct: 367 NLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIA 426

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG--REIFASMTNEYN 482
            +A +    +AL    K++ E +D + +    +L ACS  GL  E   +EI   +     
Sbjct: 427 GYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACS--GLKSEKLIKEIHGYVLKGGL 484

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG-EIELAE-F 540
                ++   +V+++G   L+  A  + E++  + ++V W S++  C  +G  IE  E F
Sbjct: 485 ADILIQN--AIVNVYGELALVDYARHVFESIN-SKDIVSWTSMITCCVHNGLAIEALELF 541

Query: 541 AAKQLLQLDPDHDGALVLLSNIYA 564
            +     ++PD    + L+S +YA
Sbjct: 542 NSLIETNIEPD---LITLVSVLYA 562


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/473 (45%), Positives = 321/473 (67%), Gaps = 8/473 (1%)

Query: 253 AHLQSTLITMYANC--GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
            ++ + +++ Y+ C  G +++A  LFD++  K+ V    M++ Y      E A  +F+ M
Sbjct: 13  GYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAY-----FESAYKVFELM 67

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
            EKD++ W+++I+G+A N  P EAL L+  M   G++PD  TM+S++SACA L  L   +
Sbjct: 68  PEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGR 127

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           R H+Y+ K     +L  NNA++D+YAKCG++  AR++F+ M   RNV+SWTS+I   A++
Sbjct: 128 RAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVN 187

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G  + AL  F  M+ E + P+ +TF+GVLYACSH G+V+EG E F  M  +Y+I P+ EH
Sbjct: 188 GFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEH 247

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           YGCMVDL GRA LL+EA + ++ MP  PN VIW +L+ AC +HG + L  FA  +LLQL+
Sbjct: 248 YGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLE 307

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P   G  VLLSN+YA ++RW DV E+R++M   G+ K    S +E+ N V+EF+  DR+H
Sbjct: 308 PKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTH 367

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
            Q++ IY+ L E+  +LK AGYVP   + L D+E+EEK   + +HSEK+A+ + LI++  
Sbjct: 368 PQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINTLP 427

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + IRI+KNLRVC DCH  IKL+SKV+ R+IV+RD +RFHH++DG CSC+DYW
Sbjct: 428 GTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 130/262 (49%), Gaps = 38/262 (14%)

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +F+ M  +DIV W+ +I+G+  NG  +E L L++ M    VEPD   +  +LSAC+    
Sbjct: 63  VFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELAT 122

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           L  G   H +++   +  + H  + L+ +YA CG +  A+ +FD                
Sbjct: 123 LVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFD---------------- 166

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
                         +  +E++++ W+++I G A N   +EAL+ F +M+  G+ P ++T 
Sbjct: 167 --------------EMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITF 212

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDL--RVNN--AIIDMYAKCGSLESAREVFE 409
           + V+ AC+H G++++      Y  +     D+  R+ +   ++D+  + G L+ A +  +
Sbjct: 213 VGVLYACSHCGIVNEGFE---YFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQ 269

Query: 410 RMR-RRNVISWTSMINAFAIHG 430
            M  + N + W +++ A  IHG
Sbjct: 270 DMPLQPNAVIWRTLLGACTIHG 291



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 1/183 (0%)

Query: 56  SFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI 115
           + +L T   +    A  +F  +P       N  I   + + +P  AL ++ +M +EG+  
Sbjct: 46  TVTLDTMITAYFESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEP 105

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           D F+   +L A A    L+ G + H    K+G   +      L+ +Y  CG I +AR +F
Sbjct: 106 DGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIF 165

Query: 176 DKMSY-RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           D+M   R++V W+ +I G   NG   E L  F++M+   + P E+    +L ACS  G +
Sbjct: 166 DEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIV 225

Query: 235 SYG 237
           + G
Sbjct: 226 NEG 228


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/587 (40%), Positives = 356/587 (60%), Gaps = 37/587 (6%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE-PDEMVLSKILSACS 229
           AR +F  +   D+  ++ +I G   +      L LF EM+  +V  PD    + +L A +
Sbjct: 58  ARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAA 117

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHL--QSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
               L+ G  +H   +     LD+HL   +TLI+MYA C C+  A+ +FD+++  N+V  
Sbjct: 118 NCRALTNGLQLHCLAV--GYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAW 175

Query: 288 TA-------------------------------MVSGYSRAGQVEDARLIFDQMVEKDLI 316
            A                               M++GY++AG+++ AR +F +M  KD +
Sbjct: 176 NAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDV 235

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            WS MI G+A N +  +A   F E++  GM+P++V++  V+SACA  G  +  + +H ++
Sbjct: 236 SWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFV 295

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
           +K+ F   + VNNA+ID Y+KCG+L+ AR VF+ M RR+ +SWT+MI   A+HG    A+
Sbjct: 296 EKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAI 355

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             FN+M++ +I P+ +TFI +LYACSHAGLVD G   F+ M N Y I P  EHYGCMVDL
Sbjct: 356 RLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDL 415

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
           +GRA  L++A + V  MP +PN ++W +L+ AC +HG + LA    +QL +LDP++ G  
Sbjct: 416 YGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDH 475

Query: 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           VLLSNIYA   +W+DV  LR+SM  + + K    S IE+N  +Y F+  ++ +    + +
Sbjct: 476 VLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAH 535

Query: 617 EKLNEVISELK-PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRI 675
           +KL E++S L+   GYVP++ S L D+E EEK + +  HSEKLA+ +G+    +   IR+
Sbjct: 536 QKLREIMSRLRIEGGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRV 595

Query: 676 VKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           VKNLR+C DCH  +KL+SKVY  EIV+RDR+RFH +  G CSC+DYW
Sbjct: 596 VKNLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/481 (28%), Positives = 219/481 (45%), Gaps = 107/481 (22%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
            S C SL  +KQ  A I K   + +   S   KLLL       T P SL+YA  +F  I 
Sbjct: 12  FSKCKSLRTVKQIQALIFKTCLNSYPLVSG--KLLL---HCAVTLPDSLHYARRLFLDIR 66

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIARAEGLLEGM 137
            P   + N  IR +S S  P +AL++F++M  + + + D FSF  +LKA A    L  G+
Sbjct: 67  NPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGL 126

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK-------------------- 177
           Q+H L    G  S  FV T L+ MY  C  ++ AR +FD+                    
Sbjct: 127 QLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCE 186

Query: 178 -----------MSYRDIVPWSVMIDGYFQNG-------------LFDEV----------- 202
                      M  R++  W++M+ GY + G             L D+V           
Sbjct: 187 GVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAH 246

Query: 203 -------LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
                     F E++   + P+E+ L+ +LSAC++AG   +G  +H F+  +       +
Sbjct: 247 NGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISV 306

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            + LI  Y+ CG +DMA+ +FD +L ++ V  TAM++G +                    
Sbjct: 307 NNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMA-------------------- 346

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
                 + GY E     EA++LFNEM+   +KPD +T +S++ AC+H G++D       Y
Sbjct: 347 ------MHGYGE-----EAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCS---Y 392

Query: 376 IDK--NAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHG 430
             +  N +G +  + +   ++D+Y + G L+ A +   +M    N I W +++ A +IHG
Sbjct: 393 FSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHG 452

Query: 431 D 431
           +
Sbjct: 453 N 453


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/653 (35%), Positives = 369/653 (56%), Gaps = 31/653 (4%)

Query: 70   ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
            AL +F +I  P     +  I  +    + + A +VF +M + G+  ++F+   ++ A   
Sbjct: 384  ALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATD 443

Query: 130  AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
               L  G  +H    K GF  D  V   LV MY   G + D   +F+  + RD++ W+ +
Sbjct: 444  LGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNAL 503

Query: 190  IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
            + G+  N   D  L +F +M      P+      IL +CS   ++  G+ VH  I+ N  
Sbjct: 504  LSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN-- 561

Query: 250  ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            +LD                              N  V TA+V  Y++   +EDA  IF++
Sbjct: 562  SLDG-----------------------------NDFVGTALVDMYAKNRFLEDAETIFNR 592

Query: 310  MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
            ++++DL  W+ +++GYA++   ++A+K F +MQ  G+KP++ T+ S +S C+ +  LD  
Sbjct: 593  LIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSG 652

Query: 370  QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
            +++H    K    GD+ V +A++DMYAKCG +E A  VF+ +  R+ +SW ++I  ++ H
Sbjct: 653  RQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQH 712

Query: 430  GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
            G    AL  F  M DE   P+ VTFIGVL ACSH GL++EG++ F S++  Y I P  EH
Sbjct: 713  GQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEH 772

Query: 490  YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
            Y CMVD+ GRA    E    +E M    NV+IW +++ AC++HG IE  E AA +L +L+
Sbjct: 773  YACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELE 832

Query: 550  PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
            P+ D   +LLSN++A    W DV  +R  M  RG+ KE  CS +E+N +V+ FL+ D SH
Sbjct: 833  PEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSH 892

Query: 610  KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
             +  +I+ KL ++  +L   GY P+    L ++ D EK+E++ +HSE+LAL + L+S+  
Sbjct: 893  PKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTST 952

Query: 670  DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
               IRI KNLR+C DCH+F+K +S++  +E+V+RD   FHH+K+G CSC+++W
Sbjct: 953  RKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/518 (26%), Positives = 236/518 (45%), Gaps = 42/518 (8%)

Query: 18  AISSCSSLTHMKQTHAQILKLS-HSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
           A S C  L   KQ HA+ +K+   S     S L+ L              +  A  +F  
Sbjct: 238 ACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKC--------GEMVLAERVFLC 289

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
           +P   +   N  +   +     +  L +F +M    +   +F+   +LK  A +  L  G
Sbjct: 290 MPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAG 349

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
             VH L  ++G   D F+   LV MY  CG   DA  +F ++   D+V WS +I    Q 
Sbjct: 350 QIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQK 409

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           G   E   +F+ M+ S V P++  L+ ++SA +  G+L YGE++H  +       D  + 
Sbjct: 410 GQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVC 469

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           + L+TMY                                + G V+D   +F+    +DLI
Sbjct: 470 NALVTMYM-------------------------------KIGSVQDGCRVFEATTNRDLI 498

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            W+A++SG+ +N      L++FN+M   G  P+  T +S++ +C+ L  +D  +++H  I
Sbjct: 499 SWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQI 558

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            KN+  G+  V  A++DMYAK   LE A  +F R+ +R++ +WT ++  +A  G    A+
Sbjct: 559 VKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAV 618

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             F +M+ E + PN  T    L  CS    +D GR++  SM  +            +VD+
Sbjct: 619 KCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLH-SMAIKAGQSGDMFVASALVDM 677

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
           + +   + +A E+V     + + V W +++     HG+
Sbjct: 678 YAKCGCVEDA-EVVFDGLVSRDTVSWNTIICGYSQHGQ 714



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 150/537 (27%), Positives = 249/537 (46%), Gaps = 48/537 (8%)

Query: 16  STAISSCSS---LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALS 72
           S  + +C+S   L   K  H Q++K   S  + +S L   L+  ++       S  YA  
Sbjct: 132 SGMLRTCASKGDLNEGKAIHGQVIK---SGINPDSHLWNSLVNVYA----KCGSANYACK 184

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F +IP          I           A+ +F +M  EG+  + F++   LKA +    
Sbjct: 185 VFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLD 244

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L  G QVH    K+G  SD FV + LV +Y  CG+++ A  +F  M  ++ V W+ +++G
Sbjct: 245 LEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNG 304

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           + Q G  ++VLNLF  M  S +   +  LS +L  C+ +GNL  G+ VH   I     LD
Sbjct: 305 FAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELD 364

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             +   L+ MY+ C                               G   DA  +F ++ +
Sbjct: 365 EFISCCLVDMYSKC-------------------------------GLAGDALKVFVRIED 393

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
            D++ WSA+I+   +    +EA ++F  M+  G+ P++ T+ S++SA   LG L   + I
Sbjct: 394 PDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESI 453

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H  + K  F  D  V NA++ MY K GS++    VFE    R++ISW ++++ F  +   
Sbjct: 454 HACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETC 513

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG- 491
              L  FN+M  E  +PN  TFI +L +CS    VD G+++ A +    N     +  G 
Sbjct: 514 DTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVK--NSLDGNDFVGT 571

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
            +VD++ +   L +A E +       ++  W  ++A     G+    E A K  +Q+
Sbjct: 572 ALVDMYAKNRFLEDA-ETIFNRLIKRDLFAWTVIVAGYAQDGQ---GEKAVKCFIQM 624



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 10/238 (4%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           L++   P      + + SCSSL+ +   KQ HAQI+K S      N  +   L+  ++  
Sbjct: 524 LAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLD---GNDFVGTALVDMYA-- 578

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
                 L  A +IF+++           +   +   + + A+K F++M  EG+  + F+ 
Sbjct: 579 --KNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTL 636

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
              L   +R   L  G Q+H +  K G   D FV + LV MY  CG + DA ++FD +  
Sbjct: 637 ASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVS 696

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
           RD V W+ +I GY Q+G   + L  FE M      PDE+    +LSACS  G +  G+
Sbjct: 697 RDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGK 754


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/507 (42%), Positives = 327/507 (64%), Gaps = 27/507 (5%)

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           P++     +L AC+  GNL+ G++VH  ++      + ++Q+TL+ MY  C         
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCC--------- 58

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
                                 G +E AR +FD+M + D + WSAMI GY       +A+
Sbjct: 59  ------------------RGGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAI 100

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
            LF EMQ+ G+ PD++TM+SV+SAC  LG L+  + +  Y++K     ++ ++NA+IDM+
Sbjct: 101 NLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMF 160

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           AKCG ++ A  +F  MR RN++SWTS+I   A+HG    A+  F +M    + P+ V FI
Sbjct: 161 AKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFI 220

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
           G+L ACSH+GLVD+G+  F SM  +++I PK EHYGCMVD+  RA L++EAL+ V+ MP 
Sbjct: 221 GLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPI 280

Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575
            PN V+W +L+ ACR HGE++L E   +QL++ +P H+   VLLSNIYAK   W+    +
Sbjct: 281 DPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRI 340

Query: 576 RKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
           R++M  +G+ K    + IE++NE+YEF+  D+SH Q+ +IYE ++E+  E+K AGY+P  
Sbjct: 341 REAMDMKGMKKIPGSTMIELDNEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTT 400

Query: 636 HSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKV 695
              L+D++DE+K + +  HSEKLA+ + L+++   + IRIVKNLRVC+DCH+  K +SK+
Sbjct: 401 TEVLLDIDDEDKEDTLNRHSEKLAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKI 460

Query: 696 YAREIVIRDRTRFHHYKDGVCSCKDYW 722
           Y REIV+RDR RFHH+K+G+CSC+D+W
Sbjct: 461 YNREIVVRDRNRFHHFKNGLCSCRDFW 487



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 154/408 (37%), Gaps = 79/408 (19%)

Query: 8   TKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSH--HSQNSLLLKLLLTSFSLPTTTPS 65
           T P  L     I +   L   K  H  ++K       + QN+L+       +        
Sbjct: 12  TYPFVLKACAGIGN---LNLGKSVHGSVMKFGFGDEVNVQNTLV-----HMYCCCRGGEG 63

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
            + +A  +F ++    S   +  I       R   A+ +F +M  +G+  D  +   +L 
Sbjct: 64  GIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLS 123

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A      L  G  V     K     +  +   L+ M+  CG +  A  +F  M  R+IV 
Sbjct: 124 ACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVS 183

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ +I G   +G   E + +FEEM  S V PD++V   +LSACS +              
Sbjct: 184 WTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHS-------------- 229

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
                                G +D  K  FD           +M   +S   ++E    
Sbjct: 230 ---------------------GLVDKGKRYFD-----------SMRKDFSIVPKIEH--- 254

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
            +  MV  D++C + ++         +EALK   EM +    P+ V   ++I+AC   G 
Sbjct: 255 -YGCMV--DMLCRAGLV---------KEALKFVQEMPI---DPNPVVWRTLINACRAHGE 299

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAII--DMYAKCGSLESAREVFERM 411
           L   ++I   + +N     +  +N ++  ++YAK    E    + E M
Sbjct: 300 LKLGEKITRQLIRNE---PMHESNYVLLSNIYAKMSDWEKKTRIREAM 344


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/708 (34%), Positives = 390/708 (55%), Gaps = 40/708 (5%)

Query: 23  SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY-------YALSIFS 75
           ++L H+ QT+A+  +L       ++LL+    T  +  T    ++Y       +AL +F 
Sbjct: 6   NALAHVIQTYAKTKRLRRGKQ-LHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFD 64

Query: 76  QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
            +P          I  +S + +   A++ F  M   G    +F+F   ++A A    +  
Sbjct: 65  TMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEM 124

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G Q+H L  K G GS+ FV + L  MY  CG + DA  +F++M  +D V W+ MIDGY +
Sbjct: 125 GKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK 184

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
            G F+E L  F++M    V  D+ VL   L AC       +G +VH  ++      D   
Sbjct: 185 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESD--- 241

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE-KD 314
                                       + V  A+   YS+AG +E A  +F    E ++
Sbjct: 242 ----------------------------IFVGNALTDMYSKAGDMESASNVFGIDSECRN 273

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           ++ ++ +I GY E    ++ L +F E++  G++P++ T  S+I ACA+   L+Q  ++H 
Sbjct: 274 VVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHA 333

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
            + K  F  D  V++ ++DMY KCG LE A + F+ +     I+W S+++ F  HG  ++
Sbjct: 334 QVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKD 393

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           A+  F +M D  + PN +TFI +L  CSHAGLV+EG + F SM   Y + P  EHY C++
Sbjct: 394 AIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVI 453

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DL GRA  L+EA E +  MPF PN   W S + ACR+HG+ E+ + AA++L++L+P + G
Sbjct: 454 DLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSG 513

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
           ALVLLSNIYA +++W+DV  +R  M++  + K    S +++  + + F   D SH +   
Sbjct: 514 ALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSA 573

Query: 615 IYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIR 674
           IYEKL+ ++ ++K AGYVP   S  +D++D  K +++  HSE++A+ + LIS      I 
Sbjct: 574 IYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPII 633

Query: 675 IVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + KNLRVC DCH+ IK +SKV  R+I++RD +RFHH+ DG CSC DYW
Sbjct: 634 VKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 169/384 (44%), Gaps = 66/384 (17%)

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           D   L+ ++   ++   L  G+ +H  +I         L + L+ MY+ CG +D A  LF
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           D +  +NLV  TAM+SG S                               +N+   EA++
Sbjct: 64  DTMPQRNLVSWTAMISGLS-------------------------------QNSKFSEAIR 92

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
            F  M++CG  P +    S I ACA LG ++  +++H    K   G +L V + + DMY+
Sbjct: 93  TFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYS 152

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KCG++  A +VFE M  ++ +SWT+MI+ ++  G+   AL+ F KM DE +  +      
Sbjct: 153 KCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCS 212

Query: 457 VLYACS-----------HAGLVDEGRE--IFA---------------SMTNEYNIPPKYE 488
            L AC            H+ +V  G E  IF                S +N + I  +  
Sbjct: 213 TLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECR 272

Query: 489 H---YGCMVDLFGRANLLREALEL---VETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           +   Y C++D +     + + L +   +      PN   + SL+ AC     +E      
Sbjct: 273 NVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLH 332

Query: 543 KQLLQLDPDHDGAL-VLLSNIYAK 565
            Q+++++ D D  +  +L ++Y K
Sbjct: 333 AQVMKINFDEDPFVSSILVDMYGK 356


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/568 (40%), Positives = 352/568 (61%), Gaps = 16/568 (2%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLN-EGLTIDRFSFPPILK 125
           L Y  +I      P +   N  IR    S  P+ A+ ++ ++L  +G   D +++P + K
Sbjct: 28  LDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFK 87

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A AR   +  G ++ G    LGF SD FV   ++ +  +CG +  AR MFDK   RD+V 
Sbjct: 88  ACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVS 147

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ MI+GY + G   E LN + EMK+  ++PDE+ +  ++S+C++  +L  G   H +I 
Sbjct: 148 WNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIE 207

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
           +N + L   L + L+ MY  CG ++ A+ LFD +  K +V  T M               
Sbjct: 208 ENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTM--------------- 252

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +FD+M +KD++ W+AMI GY   N  +EAL LFNEMQ   + PD+VTM+S +SAC+ LG 
Sbjct: 253 LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGA 312

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           LD    IH YI+K+    ++ +  A+IDMYAKCG +  A +VF+ +  RN ++WT++I+ 
Sbjct: 313 LDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISG 372

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
            A+HG+A  A+ +F++M D S+ P+ VTF+G+L AC H GLV+EGR+ F+ M++++N+ P
Sbjct: 373 LALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSP 432

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
           K +HY CMVDL GRA LL EA EL+++MP   + V+WG+L  ACR+HG + + E AA +L
Sbjct: 433 KLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKL 492

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
           LQ+DP   G  VLL+N+Y + + W++ G+ RK M++RG+ K   CS IE+N  VYEF+  
Sbjct: 493 LQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSIEVNGIVYEFIVR 552

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVP 633
           D+SH Q++QIYE L ++  +L+     P
Sbjct: 553 DKSHPQSEQIYECLIQLTRQLELVECTP 580



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 103/249 (41%), Gaps = 22/249 (8%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL------ 59
           +  KP  +     +SSC+ L  +      + + SH +  +N L L + L +  +      
Sbjct: 174 EGIKPDEVTMIGVVSSCAQLEDL-----DLGRESHCYIEENGLKLTVPLANALMDMYMKC 228

Query: 60  -----------PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKM 108
                        T  + + +   +F ++P       N  I     ++R K AL +F +M
Sbjct: 229 GNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEM 288

Query: 109 LNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI 168
               +  D  +    L A ++   L  G+ +H    K     +  + T L+ MY  CGKI
Sbjct: 289 QAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKI 348

Query: 169 LDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228
             A  +F ++  R+ + W+ +I G   +G     +  F EM  ++V PDE+    +LSAC
Sbjct: 349 TKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSAC 408

Query: 229 SRAGNLSYG 237
              G +  G
Sbjct: 409 CHGGLVEEG 417


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/727 (33%), Positives = 396/727 (54%), Gaps = 74/727 (10%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P P + + N+ I     S + +  +++F KM    L  +  +   +L+A  +
Sbjct: 187 ANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGK 246

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR-------- 181
              L    Q+HG   + G  SD  +   L+ MY   GK+  AR +FD M  R        
Sbjct: 247 MGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSM 306

Query: 182 ---------------------------DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV 214
                                      DIV W+ ++ G+F +G  +EVLN+ + M+    
Sbjct: 307 ISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGF 366

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
           +P+   ++ +L A S  G L+ G+  H +++ N    D ++ ++LI MY     +  A+ 
Sbjct: 367 KPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQA 426

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM----VEKDLICWSAMISGYA---- 326
           +FD +  +N+    ++VSGYS  G  EDA  + +QM    ++ DL+ W+ MISGYA    
Sbjct: 427 VFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGC 486

Query: 327 -------------------------------ENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
                                          +  + +++LK F +MQ  G+ P+  ++  
Sbjct: 487 GKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITC 546

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           ++ ACA L +L + + IH    +N F  D+ V  A+IDMY+K  SL++A +VF R++ + 
Sbjct: 547 LLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKT 606

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           + SW  MI  FAI G  + A+  FN+M+   + P+ +TF  +L AC ++GL+ EG + F 
Sbjct: 607 LASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFD 666

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           SM  +Y I P+ EHY CMVDL GRA  L EA +L+ TMP  P+  IWG+L+ +CR+H  +
Sbjct: 667 SMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNL 726

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           + AE AAK L +L+P++    +L+ N+Y+   RW+D+  LR+ M   G+   +  S I++
Sbjct: 727 KFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQI 786

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
           N  V+ F + ++ H    +IY +L +++SE+K  GYVPD++    ++++ EK++++L H+
Sbjct: 787 NQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHT 846

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ YGLI  K    IR++KN R+C DCH+  K +S V ARE+ +RD  RFHH+++G 
Sbjct: 847 EKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGK 906

Query: 716 CSCKDYW 722
           CSC D+W
Sbjct: 907 CSCNDFW 913



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 142/539 (26%), Positives = 270/539 (50%), Gaps = 23/539 (4%)

Query: 4   LSQPTKPLTLPTSTAISS--CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           +  PT  L L + ++  S   +SLT +K  HAQ++KL    +   +   K L++S+    
Sbjct: 23  IKTPTSKLYLDSHSSDDSNVITSLTSVKMMHAQMIKLPQKWNPDAAA--KNLISSY---- 76

Query: 62  TTPSSLYYALSIFSQIPAPPSRVS-NKFIRAISWSHRPKH-ALKVFLKMLNEGLTIDRFS 119
                 +++ ++   +  P + +  N F+     S    H  L+VF ++  +G+  D   
Sbjct: 77  -LGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEV 135

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +   LK   R   +  GM++HG   K GF  D +++  L+  YG C  +  A  +F +M 
Sbjct: 136 YSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMP 195

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
             + + W+  I    Q+    + + LF +M+ S ++ +   + ++L AC + G L+  + 
Sbjct: 196 NPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQ 255

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H ++    +  D  L + LI+MY+  G +++A+ +FD +  +N     +M+S Y+  G 
Sbjct: 256 IHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGF 315

Query: 300 VEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           + DA  +F ++    ++ D++ W+ ++SG+  + + +E L +   MQ  G KP+  +M S
Sbjct: 316 LNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTS 375

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           V+ A + LG L+  +  H Y+ +N F  D+ V  ++IDMY K  SL SA+ VF+ M+ RN
Sbjct: 376 VLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRN 435

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           + +W S+++ ++  G   +AL   N+M+ E I P+ VT+ G++   +  G    G+E  A
Sbjct: 436 IFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGC---GKEALA 492

Query: 476 SM--TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP---FAPNVVIWGSLMAAC 529
            +  T    + P    +  ++    +A   R++L+    M      PN      L+ AC
Sbjct: 493 VLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRAC 551


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/653 (35%), Positives = 372/653 (56%), Gaps = 38/653 (5%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGL-TIDRFSFPPILKAIARAE 131
           +F ++P       N  I     S   K AL      L++GL  +D  +   +L A   A 
Sbjct: 207 LFDEMPTRDMGSWNAMISGYCQSGNAKEALT-----LSDGLRAMDSVTVVSLLSACTEAG 261

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
               G+ +H    K G  S+ FV   L+ +Y   G + D + +FD+M  RD++ W+ +I 
Sbjct: 262 DFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIK 321

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
            Y  N      + LF+EM++S ++PD + L  + S  S+ G +    +V  F        
Sbjct: 322 AYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFT------- 374

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
                              + KG F    L+++ +  A+V  Y++ G V+ AR +F+ + 
Sbjct: 375 -------------------LRKGWF----LEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCG--MKPDKVTMLSVISACAHLGVLDQA 369
            KD+I W+ +ISGYA+N    EA++++N M+  G  +  ++ T +SV+ AC+  G L Q 
Sbjct: 412 NKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQG 471

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
            ++H  + KN    D+ V  ++ DMY KCG L+ A  +F ++ R N + W ++I     H
Sbjct: 472 MKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFH 531

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G    A++ F +M DE + P+ +TF+ +L ACSH+GLVDEG   F  M  +Y I P  +H
Sbjct: 532 GHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKH 591

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           YGCMVDL+GRA  L  AL  +++MP  P+  IWG+L++ACRVHG ++L + A++ L +++
Sbjct: 592 YGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVE 651

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P+H G  VLLSN+YA   +W+ V E+R     +G+ K    S +E++N+V  F T +++H
Sbjct: 652 PEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTH 711

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
              +++Y +L  +  +LK  GYVPD    L D+ED+EK  +++ HSE+LA+ + LI++  
Sbjct: 712 PMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFALITTPA 771

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + IRI KNLRVC DCH+  K +SK+  REI++RD  RFHH+K+GVCSC DYW
Sbjct: 772 KTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 153/550 (27%), Positives = 266/550 (48%), Gaps = 53/550 (9%)

Query: 17  TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
           T    C++L   K  HA+++    S+  QN  +   L+  +        + Y     F  
Sbjct: 59  TLFRYCTNLQSAKCLHARLVV---SNAIQNVCISAKLVNLYCYLGNVALARY----TFDH 111

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVF-LKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
           I        N  I     +      ++ F L ML+ GL  D  +FP +LKA      + +
Sbjct: 112 IHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKA---CRNVTD 168

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G ++H L  K GF  D +V   L+ +Y   G +++AR++FD+M  RD+  W+ MI GY Q
Sbjct: 169 GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQ 228

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           +G   E L L + ++      D + +  +LSAC+ AG+ + G  +H + I + +  +  +
Sbjct: 229 SGNAKEALTLSDGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFV 284

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            + LI +YA  G +   + +FD++ +++L                               
Sbjct: 285 SNKLIDLYAEFGSLKDCQKVFDRMYVRDL------------------------------- 313

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           I W+++I  Y  N  P  A+ LF EM++  ++PD +T++S+ S  + LG +   + +  +
Sbjct: 314 ISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGF 373

Query: 376 -IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
            + K  F  D+ + NA++ MYAK G ++SAR VF  +  ++VISW ++I+ +A +G A  
Sbjct: 374 TLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASE 433

Query: 435 ALIFFNKMKDES--IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
           A+  +N M++E   I  N  T++ VL ACS AG + +G ++   +         +     
Sbjct: 434 AIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTS- 492

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ--LDP 550
           + D++G+   L +AL L   +P   N V W +L+A    HG  E A    K++L   + P
Sbjct: 493 LADMYGKCGRLDDALSLFYQIPRV-NSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKP 551

Query: 551 DHDGALVLLS 560
           DH   + LLS
Sbjct: 552 DHITFVTLLS 561



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 178/364 (48%), Gaps = 30/364 (8%)

Query: 235 SYGEAVHEFIIDNNVALDAHLQST-------LITMYANCGCMDMAKGLFDKVL----LKN 283
           S G  V EF    N   D             + T++  C  +  AK L  +++    ++N
Sbjct: 26  SVGAVVREFSASANALQDCWKNGNESKEIDDVHTLFRYCTNLQSAKCLHARLVVSNAIQN 85

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE-MQ 342
           + +S  +V+ Y   G V  AR  FD +  +D+  W+ MISGY    +  E ++ F+  M 
Sbjct: 86  VCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFML 145

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
             G++PD  T  SV+ AC +   +    +IH    K  F  D+ V  ++I +Y + G++ 
Sbjct: 146 SSGLQPDYRTFPSVLKACRN---VTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVV 202

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
           +AR +F+ M  R++ SW +MI+ +   G+A+ AL   + ++  ++D   VT + +L AC+
Sbjct: 203 NARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLR--AMDS--VTVVSLLSACT 258

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
            AG  + G  I  S + ++ +  +      ++DL+     L++  ++ + M +  +++ W
Sbjct: 259 EAGDFNRGVTIH-SYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRM-YVRDLISW 316

Query: 523 GSLMAACRVHGEI--ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
            S++ A  ++ +    +  F   +L ++ PD    L+ L++I ++      +GE+R    
Sbjct: 317 NSIIKAYELNEQPLRAILLFQEMRLSRIQPDCL-TLISLASILSQ------LGEIRACRS 369

Query: 581 ERGI 584
            +G 
Sbjct: 370 VQGF 373



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 97/243 (39%), Gaps = 45/243 (18%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLL-TSFSLPTTT 63
           +Q T    LP   A S   +L    + H ++LK        N L L + + TS +     
Sbjct: 451 NQGTWVSVLP---ACSQAGALRQGMKLHGRLLK--------NGLYLDVFVGTSLADMYGK 499

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
              L  ALS+F QIP   S   N  I    +    + A+ +F +ML+EG+  D  +F  +
Sbjct: 500 CGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTL 559

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L A + +  + EG     +  +  +G  P ++      YG                    
Sbjct: 560 LSACSHSGLVDEGEWCFEM-MQTDYGITPSLK-----HYGC------------------- 594

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
                M+D Y + G  +  LN  + M +   +PD  +   +LSAC   GN+  G+   E 
Sbjct: 595 -----MVDLYGRAGQLEIALNFIKSMPL---QPDASIWGALLSACRVHGNVDLGKIASEH 646

Query: 244 IID 246
           + +
Sbjct: 647 LFE 649


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/617 (40%), Positives = 367/617 (59%), Gaps = 5/617 (0%)

Query: 28  MKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNK 87
           +K  HAQI+     H   N  L    L SF         L YA  +F QIP P   + N 
Sbjct: 4   LKLLHAQIIL----HGLTNETLTLGKLISFC-AVDDAGDLQYAQRMFDQIPQPNKFMYNS 58

Query: 88  FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
            IR  S S  P  A+ +F +M+  GL+ + F+ P +LKA        E + VHGL  KLG
Sbjct: 59  LIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLG 118

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207
            GS  FVQ  L+ +Y  CG I  AR +FD ++ + +V W+ MI GY   G + E   LF 
Sbjct: 119 IGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFR 178

Query: 208 EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           +M+   +EPD      +LS CS++ +L  G  VH  I    V +D  +++ L+ MYA CG
Sbjct: 179 KMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCG 238

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
            +  A+ +FD+   KN+V  T+M+S Y++ G +E AR IFDQM  K+++ W++MIS Y  
Sbjct: 239 NLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLR 298

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
               +EAL LFN+M+   + PD+ T++S+++AC+ LG L   ++IH YI  N     + +
Sbjct: 299 EGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTL 358

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
            N++IDMYAKCG + +A ++F  M  +N++SW  +I A A+HG    A+  F +M+ +  
Sbjct: 359 YNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGT 418

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            P+ +T  G+L ACSH+GLVD G   F  M   Y +P + EHY CMVDL GR  LL EA+
Sbjct: 419 LPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAI 478

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
           EL+  MP  P+VV+WG+L+ ACR+HG +E+ +   KQLL+L+P   G  VL+SNIY + +
Sbjct: 479 ELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQ 538

Query: 568 RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627
           RW+DV ++RK M +RGI K RA S IE++  +YEF+  D+ HK +  IY  L+++   L+
Sbjct: 539 RWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLTDHLR 598

Query: 628 PAGYVPDIHSALVDLED 644
            AGY+ +I S   + E+
Sbjct: 599 SAGYLCNISSVFFEAEE 615


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/601 (37%), Positives = 361/601 (60%), Gaps = 40/601 (6%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+  Y +   +  AR +FD++  R+++  +VMI  Y  NG + E + +F  M   +V+PD
Sbjct: 81  LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPD 140

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
                 +L ACS +GN+  G+ +H       ++    + + L++MY  CG +  A+ + D
Sbjct: 141 HYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 200

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDA---------------------------------- 303
           ++  +++V   ++V+GY++  + +DA                                  
Sbjct: 201 EMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 260

Query: 304 ---RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
              + +F +M +K L+ W+ MI  Y +N  P EA++L++ M+  G +PD V++ SV+ AC
Sbjct: 261 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPAC 320

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
                L   ++IH YI++     +L + NA+IDMYAKCG L+ AR+VFE M+ R+V+SWT
Sbjct: 321 GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWT 380

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +MI+A+   G   +A+  F+KM+D  + P+ + F+  L ACSHAGL++EGR  F  MT+ 
Sbjct: 381 AMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 440

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
           Y I P+ EH  CMVDL GRA  ++EA + ++ MP  PN  +WG+L+ ACRVH   ++   
Sbjct: 441 YKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLL 500

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
           AA +L QL P+  G  VLLSNIYAK  RW++V  +R  MK +G+ K    S +E+N  ++
Sbjct: 501 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 560

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
            FL  DRSH Q+ +IY +L+ ++ ++K  GYVPD  SAL D+E+E+K   +  HSEKLA+
Sbjct: 561 TFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAI 620

Query: 661 CYGLISSKKD---SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCS 717
            + L++++++   + IRI KNLR+C DCH   KL+S++ +REI+IRD  RFH ++ GVCS
Sbjct: 621 VFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCS 680

Query: 718 C 718
           C
Sbjct: 681 C 681



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 228/457 (49%), Gaps = 46/457 (10%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV 84
           L  ++  H++I+     ++S  SL +KL+    SL       +  A  +F +IP     +
Sbjct: 56  LKTLRTVHSRIISEDLRYNS--SLGVKLMRAYASL-----KDVATARKVFDEIPERNVII 108

Query: 85  SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
            N  IR+   +   +  ++VF  M +  +  D ++FP +LKA + +  ++ G ++HG  T
Sbjct: 109 INVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSAT 168

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           K+G  S  FV  GLV MYG CG + +ARL+ D+MS RD+V W+ ++ GY QN  FD+ L 
Sbjct: 169 KVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALE 228

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAG--NLSYGEAV-----HEFIIDNNVALDAHLQS 257
           +  EM+   +  D   ++ +L A S     N+ Y + +      + ++  NV +  ++++
Sbjct: 229 VCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKN 288

Query: 258 TL----ITMYAN-------------------CG---CMDMAKGLFD----KVLLKNLVVS 287
            +    + +Y+                    CG    + + K +      K L+ NL++ 
Sbjct: 289 AMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE 348

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
            A++  Y++ G ++ AR +F+ M  +D++ W+AMIS Y  +    +A+ LF++MQ  G+ 
Sbjct: 349 NALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLV 408

Query: 348 PDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE 406
           PD +  ++ ++AC+H G+L++ +    L  D       L     ++D+  + G ++ A +
Sbjct: 409 PDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYK 468

Query: 407 VFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKM 442
             + M    N   W +++ A  +H +    L+  +K+
Sbjct: 469 FIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKL 505



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 149/318 (46%), Gaps = 29/318 (9%)

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           N  +   ++  Y+    V  AR +FD++ E+++I  + MI  Y  N   +E +++F  M 
Sbjct: 74  NSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMC 133

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
            C +KPD  T   V+ AC+  G +   ++IH    K      L V N ++ MY KCG L 
Sbjct: 134 SCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLS 193

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            AR V + M RR+V+SW S++  +A +    +AL    +M+   I  +  T   +L A S
Sbjct: 194 EARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVS 253

Query: 463 HAGL--VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP---FAP 517
           +     V   +++F  M  +  +      +  M+ ++ +  +  EA+EL   M    F P
Sbjct: 254 NTTTENVMYVKDMFFKMGKKSLVS-----WNVMIGVYMKNAMPVEAVELYSGMEADGFEP 308

Query: 518 NVVIWGSLMAAC----------RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
           + V   S++ AC          ++HG IE  +     LL+       AL+   ++YAK  
Sbjct: 309 DAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE------NALI---DMYAKCG 359

Query: 568 RWQDVGELRKSMKERGIL 585
                 ++ ++MK R ++
Sbjct: 360 CLDRARDVFENMKSRDVV 377


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/628 (38%), Positives = 375/628 (59%), Gaps = 7/628 (1%)

Query: 97  RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQT 156
           +   +L +F KM  EG+  D+ +   ++ A A+   + +   +     +  F  D  + T
Sbjct: 239 KANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGT 298

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
            ++ MY  CG +  AR +FD+M  ++++ WS MI  Y  +G   + L+LF  M  S + P
Sbjct: 299 AMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLP 358

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           D++ L+ +L AC    NL+    VH     + +  +  + + L+  Y+    +D A GLF
Sbjct: 359 DKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLF 418

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN--NHPQEA 334
           D + +++ V  + MV G+++ G   +    F     ++LI   A    Y      +  E+
Sbjct: 419 DGMCVRDSVSWSVMVGGFAKVGDYMNCFGTF-----RELIRCGARPDNYTLPFCGNANES 473

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
           L LF++M+  G+ PDKV M++V+ ACA LG + +A+ I  YI +  F  D+ +  A+IDM
Sbjct: 474 LVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDM 533

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           +AKCG +ESARE+F+RM  +NVISW++MI A+  HG  R AL  F  M    I PN +T 
Sbjct: 534 HAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITL 593

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           + +LYACSHAGLV+EG   F+ M  +Y++    +HY C+VDL GRA  L EAL+L+E+M 
Sbjct: 594 VSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMT 653

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
              +  +WG+ + ACR H ++ LAE AA  LL+L P + G  +LLSNIYA   RW+DV +
Sbjct: 654 VEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAK 713

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
            R  M +R + K    + IE++N+ ++F   D +H ++ +IYE L  + ++L+  GYVPD
Sbjct: 714 TRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPD 773

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
            +  L D+++E K  ++  HSEKLA+ +GLI++ + + IRI+KNLRVC DCH F KLVS 
Sbjct: 774 TNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSA 833

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +  R I++RD  RFHH+K+G CSC DYW
Sbjct: 834 ITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/406 (31%), Positives = 192/406 (47%), Gaps = 63/406 (15%)

Query: 75  SQIPAPPSRVSNKFIR-AISWSHRPKHALKV-FLKMLNEGLTIDRFSFPPILKAIARAEG 132
           S IP   S +  +F + +++  +R + + K  FL+ LN    I          A+     
Sbjct: 43  SVIPIVESIIETQFRQTSLNLHNREEESSKFHFLQRLNPKFYI---------SALVNCRN 93

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L +  QVH   +  G   +  V   L+  Y     + DA  +FD M  RD V WSVM+ G
Sbjct: 94  LTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 153

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           + + G +      F E+      PD   L  ++ AC    NL                  
Sbjct: 154 FAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNL------------------ 195

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
              Q  L+ MY  C                                ++EDAR +FD+M E
Sbjct: 196 ---QMALVDMYVKCR-------------------------------EIEDARFLFDKMQE 221

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           +DL+ W+ MI GYAE     E+L LF +M+  G+ PDKV M++V+ ACA LG + +A+ I
Sbjct: 222 RDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARII 281

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
             YI +  F  D+ +  A+IDMYAKCG +ESARE+F+RM  +NVISW++MI A+  HG  
Sbjct: 282 DDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQG 341

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           R AL  F  M    + P+ +T   +LYAC +   + + R++ A  +
Sbjct: 342 RKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQAS 387



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 143/560 (25%), Positives = 252/560 (45%), Gaps = 117/560 (20%)

Query: 17  TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
           +A+ +C +LT ++Q HAQ         S + +L  +++ +          L Y  S +  
Sbjct: 86  SALVNCRNLTQVRQVHAQA--------SVHGMLENIVVAN---------KLIYFYSYYRA 128

Query: 77  IPAPPSRVSNKFIR-AISWSHRPKHALKV---------FLKMLNEGLTIDRFSFPPILKA 126
           +           +R ++SWS       KV         F +++  G   D ++ P +++A
Sbjct: 129 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA 188

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
               + L                     Q  LV MY  C +I DAR +FDKM  RD+V W
Sbjct: 189 CRDLKNL---------------------QMALVDMYVKCREIEDARFLFDKMQERDLVTW 227

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           +VMI GY + G  +E L LFE+M+   V PD++ +  ++ AC++ G +     + ++I  
Sbjct: 228 TVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQR 287

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
               LD  L + +I MYA CGC++ A+ +FD++  KN++  +AM++ Y   GQ       
Sbjct: 288 KKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ------- 340

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
                                    ++AL LF  M   GM PDK+T+ S++ AC +   L
Sbjct: 341 ------------------------GRKALDLFRMMLSSGMLPDKITLASLLYACINCRNL 376

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
            Q +++H     +    +L V N ++  Y+   +L+ A  +F+ M  R+ +SW+ M+  F
Sbjct: 377 TQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGF 436

Query: 427 AIHGD----------------------------ARNALIFFNKMKDESIDPNGVTFIGVL 458
           A  GD                            A  +L+ F+KM++E + P+ V  + V+
Sbjct: 437 AKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVV 496

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYE----HYGCMVDLFGRANLLREALELVETMP 514
           +AC+  G + + R I     ++Y    K++        M+D+  +   +  A E+ + M 
Sbjct: 497 FACAKLGAMHKARTI-----DDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRME 551

Query: 515 FAPNVVIWGSLMAACRVHGE 534
              NV+ W +++AA   HG+
Sbjct: 552 -EKNVISWSAMIAAYGYHGQ 570



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 29/254 (11%)

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           ISA  +   L Q +++H     +    ++ V N +I  Y+   +L+ A  +F+ M  R+ 
Sbjct: 85  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 144

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS-----HAGLVD--- 468
           +SW+ M+  FA  GD  N    F ++      P+  T   V+ AC         LVD   
Sbjct: 145 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMALVDMYV 204

Query: 469 ------EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM---PFAPNV 519
                 + R +F  M     +      +  M+  +       E+L L E M      P+ 
Sbjct: 205 KCREIEDARFLFDKMQERDLVT-----WTVMIGGYAECGKANESLVLFEKMREEGVVPDK 259

Query: 520 VIWGSLMAACRVHGEIELA----EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575
           V   +++ AC   G +  A    ++  ++  QLD     A++   ++YAK    +   E+
Sbjct: 260 VAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMI---DMYAKCGCVESAREI 316

Query: 576 RKSMKERGILKERA 589
              M+E+ ++   A
Sbjct: 317 FDRMEEKNVISWSA 330


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/702 (34%), Positives = 404/702 (57%), Gaps = 14/702 (1%)

Query: 28   MKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVS-N 86
            +K  HAQ++KL    +   +   K L++S+          +++ ++   +  P + +  N
Sbjct: 439  IKMMHAQMIKLPQKWNPDAAA--KNLISSY-----LGFGDFWSAAMVFYVGLPRNYLKWN 491

Query: 87   KFIRAISWSHRPKH-ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
             F+     S    H  L+VF ++  +G+  D   +   LK   R   +  GM++HG   K
Sbjct: 492  SFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIK 551

Query: 146  LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
             GF  D +++  L+  YG C  +  A  +F +M   + + W+  I    Q+    + + L
Sbjct: 552  RGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVEL 611

Query: 206  FEEMKMSNVEPDEMVLSKILSAC-SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
            F +M+ S ++ +   + ++L A  S  G L+ G+  H +++ N    D ++ ++LI MY 
Sbjct: 612  FRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYV 671

Query: 265  NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM----VEKDLICWSA 320
                +  A+ +FD +  +N+    ++VSGYS  G  EDA  + +QM    ++ DL+ W+ 
Sbjct: 672  KNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNG 731

Query: 321  MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
            MISGYA     +EAL  F +MQ  G+ P+  ++  ++ ACA L +L + + IH    +N 
Sbjct: 732  MISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNG 791

Query: 381  FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
            F  D+ V  A+IDMY+K  SL++A +VF R++ + + SW  MI  FAI G  + A+  FN
Sbjct: 792  FIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFN 851

Query: 441  KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500
            +M+   + P+ +TF  +L AC ++GL+ EG + F SM  +Y I P+ EHY CMVDL GRA
Sbjct: 852  EMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRA 911

Query: 501  NLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560
              L EA +L+ TMP  P+  IWG+L+ +CR+H  ++ AE AAK L +L+P++    +L+ 
Sbjct: 912  GYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMM 971

Query: 561  NIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLN 620
            N+Y+   RW+D+  LR+ M   G+   +  S I++N  V+ F + ++ H    +IY +L 
Sbjct: 972  NLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELY 1031

Query: 621  EVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLR 680
            +++SE+K  GYVPD++    ++++ EK++++L H+EKLA+ YGLI  K    IR++KN R
Sbjct: 1032 QLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTR 1091

Query: 681  VCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            +C DCH+  K +S V ARE+ +RD  RFHH+++G CSC D+W
Sbjct: 1092 ICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1133


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/603 (37%), Positives = 357/603 (59%), Gaps = 42/603 (6%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+  Y +   +  AR +FD++  R+++  +VMI  Y  NG + E + +F  M   NV PD
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
                 +L ACS +G +  G  +H       ++    + + L++MY  CG +  A+ + D
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDA---------------------------------- 303
           ++  +++V   ++V GY++  + +DA                                  
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259

Query: 304 ---RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
              + +F +M +K L+ W+ MI  Y +N  P EA++L++ M+  G +PD V++ SV+ AC
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
                L   ++IH YI++     +L + NA+IDMYAKCG LE AR+VFE M+ R+V+SWT
Sbjct: 320 GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT 379

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +MI+A+   G   +A+  F+K++D  + P+ + F+  L ACSHAGL++EGR  F  MT+ 
Sbjct: 380 AMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 439

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
           Y I P+ EH  CMVDL GRA  ++EA   ++ M   PN  +WG+L+ ACRVH + ++   
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
           AA +L QL P+  G  VLLSNIYAK  RW++V  +R  MK +G+ K    S +E+N  ++
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 559

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
            FL  DRSH Q+D+IY +L+ ++ ++K  GYVPD  SAL D+E+E+K   +  HSEKLA+
Sbjct: 560 TFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAI 619

Query: 661 CYGLISSKKD-----SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
            + L+++K++     + IRI KNLR+C DCH   KL+S++ +REI+IRD  RFH ++ GV
Sbjct: 620 VFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGV 679

Query: 716 CSC 718
           CSC
Sbjct: 680 CSC 682



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 205/412 (49%), Gaps = 39/412 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F +IP     + N  IR+   +      +KVF  M    +  D ++FP +LKA + 
Sbjct: 93  ARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSC 152

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           +  ++ G ++HG  TK+G  S  FV  GLV MYG CG + +ARL+ D+MS RD+V W+ +
Sbjct: 153 SGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSL 212

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG--NLSYGEAV-----HE 242
           + GY QN  FD+ L +  EM+   +  D   ++ +L A S     N+ Y + +      +
Sbjct: 213 VVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKK 272

Query: 243 FIIDNNVALDAHLQSTL----ITMYAN-------------------CG---CMDMAKGLF 276
            ++  NV +  ++++ +    + +Y+                    CG    + + K + 
Sbjct: 273 SLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIH 332

Query: 277 D----KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
                K L+ NL++  A++  Y++ G +E AR +F+ M  +D++ W+AMIS Y  +    
Sbjct: 333 GYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGC 392

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAI 391
           +A+ LF+++Q  G+ PD +  ++ ++AC+H G+L++ +    L  D       L     +
Sbjct: 393 DAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACM 452

Query: 392 IDMYAKCGSLESAREVFERMRRR-NVISWTSMINAFAIHGDARNALIFFNKM 442
           +D+  + G ++ A    + M    N   W +++ A  +H D    L+  +K+
Sbjct: 453 VDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL 504



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 159/332 (47%), Gaps = 33/332 (9%)

Query: 273 KGLFDKVLLKNLVVSTAM----VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           + +  +++L++L  ++++    +  Y+    V  AR +FD++ E+++I  + MI  Y  N
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
               E +K+F  M  C ++PD  T   V+ AC+  G +   ++IH    K      L V 
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           N ++ MY KCG L  AR V + M RR+V+SW S++  +A +    +AL    +M+   I 
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238

Query: 449 PNGVTFIGVLYACSHAGL--VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
            +  T   +L A S+     V   +++F  M  +  +      +  M+ ++ +  +  EA
Sbjct: 239 HDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVS-----WNVMIGVYMKNAMPVEA 293

Query: 507 LELVETMP---FAPNVVIWGSLMAAC----------RVHGEIELAEFAAKQLLQLDPDHD 553
           +EL   M    F P+ V   S++ AC          ++HG IE  +     LL+      
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE------ 347

Query: 554 GALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585
            AL+   ++YAK    +   ++ ++MK R ++
Sbjct: 348 NALI---DMYAKCGCLEKARDVFENMKSRDVV 376


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/566 (40%), Positives = 345/566 (60%), Gaps = 10/566 (1%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           ++G Y    +++DAR +FD+M  RD V W+ MI GY QNG   E   LFEE  + +V   
Sbjct: 210 MMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV--- 266

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIID-NNVALDAHLQSTLITMYANCGCMDMAKGLF 276
               + ++S   + G L     V + + + N+V+ +A     +I  Y  C  MD A+ LF
Sbjct: 267 -FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNA-----IIAGYVQCKRMDQARELF 320

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           + +  +N+     M++GY++ G +  AR  FD+M ++D I W+A+I+GYA++ + +EAL 
Sbjct: 321 EAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALH 380

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           LF EM+  G + ++ T  S +S CA +  L+  +++H  + K        V NA++ MY 
Sbjct: 381 LFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYC 440

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KCG+++ A  VFE +  + V+SW +MI  +A HG  + AL+ F  MK   I P+ VT +G
Sbjct: 441 KCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVG 500

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           VL ACSH GLVD+G E F SMT +Y I    +HY CM+DL GRA  L +A  L++ MPF 
Sbjct: 501 VLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFE 560

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
           P+   WG+L+ A R+HG  EL E AAK + +++PD+ G  VLLSN+YA   RW DVG +R
Sbjct: 561 PDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMR 620

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
             M++RG+ K    S +E+ N+++ F   D  H + D+IY  L E+  ++K  GYV    
Sbjct: 621 LRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTK 680

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
             L D+E+EEK  ++ +HSEKLA+ +G+++      IR++KNLRVCEDCHN +K +SK+ 
Sbjct: 681 LVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIV 740

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
            R I++RD  RFHH+  G CSC DYW
Sbjct: 741 GRLIILRDSHRFHHFNGGQCSCGDYW 766



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 152/311 (48%), Gaps = 53/311 (17%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           ARL+FD+M  RD+V W+ M+ GY QNG   E   +F+EM   N                 
Sbjct: 130 ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNS---------------- 173

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
                         I  N  L A++Q+         G ++ A+ LF+      L+    M
Sbjct: 174 --------------ISWNGMLAAYVQN---------GRIEDARRLFESKADWELISWNCM 210

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           + GY +  ++ DAR IFD+M E+D + W+ MISGYA+N    EA +LF E  V     D 
Sbjct: 211 MGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPV----RDV 266

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYI-DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
            T  +++S     G+LD+A+R+   + +KN+        NAII  Y +C  ++ ARE+FE
Sbjct: 267 FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSW-----NAIIAGYVQCKRMDQARELFE 321

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            M  +NV SW +MI  +A +GD   A  FF++M       + +++  ++   + +G  +E
Sbjct: 322 AMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQR----DSISWAAIIAGYAQSGYGEE 377

Query: 470 GREIFASMTNE 480
              +F  M  +
Sbjct: 378 ALHLFVEMKRD 388



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 156/319 (48%), Gaps = 43/319 (13%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D F  T +V  Y   G + +AR +FD M  ++ V W+ +I GY Q    D+   LFE M 
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMP 324

Query: 211 MSNV---------------------------EPDEMVLSKILSACSRAGNLSYG-EAVHE 242
             NV                           + D +  + I++  +++G   YG EA+H 
Sbjct: 325 CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSG---YGEEALHL 381

Query: 243 FI---IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL----VVSTAMVSGYS 295
           F+    D      +   STL T  A    +++ K +  +V+   L     V  A++  Y 
Sbjct: 382 FVEMKRDGERLNRSTFTSTLSTC-AEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYC 440

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           + G ++DA ++F+ + EK+++ W+ MI+GYA +   +EAL LF  M+  G+ PD VTM+ 
Sbjct: 441 KCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVG 500

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERMR- 412
           V+SAC+H G++D+    + Y     +G   + +    +ID+  + G L+ A+ + + M  
Sbjct: 501 VLSACSHTGLVDKGTE-YFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPF 559

Query: 413 RRNVISWTSMINAFAIHGD 431
             +  +W +++ A  IHG+
Sbjct: 560 EPDAATWGALLGASRIHGN 578



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 173/368 (47%), Gaps = 57/368 (15%)

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           DIV W++ I  + +NG  D  L LF  M                    R  ++S+   + 
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSM-------------------PRRSSISWNAMIS 88

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
             + ++   L                    A+ LF+K+  ++LV    M+SG  R   + 
Sbjct: 89  GCLSNDKFYL--------------------ARQLFEKMPTRDLVSWNVMISGCVRYRNLR 128

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
            ARL+FDQM E+D++ W+AM+SGYA+N + +EA ++F+EM       + ++   +++A  
Sbjct: 129 AARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPC----KNSISWNGMLAAYV 184

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
             G ++ A+R  L+  K  +  +L   N ++  Y K   L  AR +F+RM  R+ +SW +
Sbjct: 185 QNGRIEDARR--LFESKADW--ELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNT 240

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI+ +A +G+   A   F    +ES   +  T+  ++      G++DE R +F  M  + 
Sbjct: 241 MISGYAQNGELLEAQRLF----EESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKN 296

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
           ++      +  ++  + +   + +A EL E MP   NV  W +++     +G+I  A   
Sbjct: 297 SVS-----WNAIIAGYVQCKRMDQARELFEAMP-CQNVSSWNTMITGYAQNGDIAQARNF 350

Query: 542 AKQLLQLD 549
             ++ Q D
Sbjct: 351 FDRMPQRD 358



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 6/245 (2%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A + F ++P   S      I   + S   + AL +F++M  +G  ++R +F   L   A 
Sbjct: 347 ARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAE 406

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G QVHG   K G  S  +V   L+ MY  CG I DA ++F+ +  +++V W+ M
Sbjct: 407 IAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTM 466

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDNN 248
           I GY ++G   E L LFE MK + + PD++ +  +LSACS  G +  G E  +    D  
Sbjct: 467 IAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYG 526

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA-GQVE----DA 303
           +  ++   + +I +    G +D A+ L   +  +    +   + G SR  G  E     A
Sbjct: 527 ITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAA 586

Query: 304 RLIFD 308
           ++IF+
Sbjct: 587 KMIFE 591


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/622 (38%), Positives = 362/622 (58%), Gaps = 33/622 (5%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A+ +F ++L    T D+F+   +L A    E    G Q+H    + G  SD FV   LV 
Sbjct: 232 AVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVD 291

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY     + ++R +F+ M + +++ W+ +I GY Q+    E + LF  M   +V P+   
Sbjct: 292 MYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFT 351

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
            S +L AC+   +   G+ +H   I   +       ST+     NC              
Sbjct: 352 FSSVLKACASLPDFGIGKQLHGQTIKLGL-------STI-----NC-------------- 385

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                V  ++++ Y+R+G +E AR  F+ + EK+LI ++      A+     E+    +E
Sbjct: 386 -----VGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFN--HE 438

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           ++  G+     T   ++S  A +G + + ++IH  I K+ FG +L +NNA+I MY+KCG+
Sbjct: 439 VEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGN 498

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
            E+A +VF  M  RNVI+WTS+I+ FA HG A  AL  F +M +  + PN VT+I VL A
Sbjct: 499 KEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSA 558

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSH GL+DE  + F SM   ++I P+ EHY CMVDL GR+ LL EA+E + +MPF  + +
Sbjct: 559 CSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADAL 618

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           +W + + +CRVH   +L E AAK++L+ +P      +LLSN+YA + RW DV  LRKSMK
Sbjct: 619 VWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMK 678

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           ++ ++KE   S IE++N+V++F   D SH Q  +IY++L+E+  ++K  GY+P+    L 
Sbjct: 679 QKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLH 738

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D+EDE+K + +  HSEK+A+ Y LIS+ K   IR+ KNLRVC DCH  IK +S V  REI
Sbjct: 739 DVEDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREI 798

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           V+RD  RFHH KDG CSC DYW
Sbjct: 799 VVRDANRFHHIKDGKCSCNDYW 820



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 168/354 (47%), Gaps = 38/354 (10%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY-- 180
           +LKA  R+  L  G  +H      G   D  +   L+ +Y  CG   +A  +F  M +  
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN---VEPDEMVLSKILSACSRAGNLSYG 237
           RD+V WS +I  +  N +    L  F  M   +   + P+E   + +L +CS     + G
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
            A+  F++                            G FD     ++ V  A++  +++ 
Sbjct: 165 LAIFAFLLKT--------------------------GYFDS----HVCVGCALIDMFTKG 194

Query: 298 G-QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
           G  ++ AR++FD+M  K+L+ W+ MI+ Y++     +A+ LF  + V    PDK T+ S+
Sbjct: 195 GLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSL 254

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           +SAC  L      +++H ++ ++    D+ V   ++DMYAK  ++E++R++F  M   NV
Sbjct: 255 LSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNV 314

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           +SWT++I+ +      + A+  F  M    + PN  TF  VL AC  A L D G
Sbjct: 315 MSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKAC--ASLPDFG 366



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 171/369 (46%), Gaps = 36/369 (9%)

Query: 95  SHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFV 154
           S + + A+K+F  ML+  +T + F+F  +LKA A       G Q+HG   KLG  +   V
Sbjct: 327 SRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCV 386

Query: 155 QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV 214
              L+ MY   G +  AR  F+ +  ++++ ++   D   +    DE  N   E++ + V
Sbjct: 387 GNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFN--HEVEHTGV 444

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
                  + +LS  +  G +  GE +H  I+ +    +  + + LI+MY+ CG  + A  
Sbjct: 445 GASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQ 504

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
           +F+ +  +N++  T+++SG+++ G                                  +A
Sbjct: 505 VFNDMGYRNVITWTSIISGFAKHG-------------------------------FATKA 533

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIID 393
           L+LF EM   G+KP++VT ++V+SAC+H+G++D+A +    +  N +    +     ++D
Sbjct: 534 LELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVD 593

Query: 394 MYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNK-MKDESIDPNG 451
           +  + G L  A E    M    + + W + + +  +H + +       K ++ E  DP  
Sbjct: 594 LLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPAT 653

Query: 452 VTFIGVLYA 460
              +  LYA
Sbjct: 654 YILLSNLYA 662



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 151/315 (47%), Gaps = 42/315 (13%)

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           S +L AC R+GNL  G+ +H  +ID+ + LD+ L ++LIT+Y+ C               
Sbjct: 43  SLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKC--------------- 87

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMV--EKDLICWSAMISGYAENNHPQEALKLFN 339
                           G  E+A  IF  M   ++DL+ WSA+IS +A N+    AL  F 
Sbjct: 88  ----------------GDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFL 131

Query: 340 EMQVCG---MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA-FGGDLRVNNAIIDMY 395
            M  C    + P++    +++ +C++         I  ++ K   F   + V  A+IDM+
Sbjct: 132 HMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMF 191

Query: 396 AKCG-SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
            K G  ++SAR VF++M+ +N+++WT MI  ++  G   +A+  F ++      P+  T 
Sbjct: 192 TKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTL 251

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC-MVDLFGRANLLREALELVETM 513
             +L AC        G+++ + +         +   GC +VD++ ++  +  + ++  TM
Sbjct: 252 TSLLSACVELEFFSLGKQLHSWVIRSGLASDVF--VGCTLVDMYAKSAAVENSRKIFNTM 309

Query: 514 PFAPNVVIWGSLMAA 528
               NV+ W +L++ 
Sbjct: 310 -LHHNVMSWTALISG 323


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 254/739 (34%), Positives = 404/739 (54%), Gaps = 59/739 (7%)

Query: 4   LSQPTKPLTLPTSTAISSCSSL------THMKQTHAQILKLSHSHHSQNSLLLKLLLTSF 57
           L +  +P +    + +++CS+L         KQ HA  L+        NS ++  L+  +
Sbjct: 104 LDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGE----LNSFIINTLVAMY 159

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117
                  SS      +            N  + ++  + +   AL+   +M+ EG+  D 
Sbjct: 160 GKLGKLASSKV----LLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDE 215

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLG-FGSDPFVQTGLVGMYGACGKILDARLMFD 176
           F+   +L A +  E L  G ++H    K G    + FV + LV MY  C ++L  R +FD
Sbjct: 216 FTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFD 275

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACSRAGNLS 235
            M  R I  W+ MI GY QN    E L LF  M+ S  +  +   ++ ++ AC R+G  S
Sbjct: 276 GMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFS 335

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
             EA+H F++   +  D  +Q+TL         MDM                      YS
Sbjct: 336 RKEAIHGFVVKRGLDRDRFVQNTL---------MDM----------------------YS 364

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ-----------VC 344
           R G+++ A  IF +M ++DL+ W+ MI+GY  + H ++AL L ++MQ             
Sbjct: 365 RLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRV 424

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
            +KP+ +T+++++ +CA L  L + + IH Y  KN    D+ V +A++DMYAKCG L+ +
Sbjct: 425 SLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMS 484

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
           R+VF+++ ++NVI+W  +I A+ +HG+ + A+     M  + + PN VTFI V  ACSH+
Sbjct: 485 RKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHS 544

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV-IWG 523
           G+VDEG  IF  M  +Y + P  +HY C+VDL GRA  ++EA +L+  MP   N    W 
Sbjct: 545 GMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWS 604

Query: 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
           SL+ A R+H  +E+ E AA+ L+QL+P+     VLL+NIY+    W    E+R++MKE+G
Sbjct: 605 SLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQG 664

Query: 584 ILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLE 643
           + KE  CS IE  +EV++F+  D SH Q++++   L  +   ++  GYVPD    L ++E
Sbjct: 665 VRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVE 724

Query: 644 DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIR 703
           ++EK  ++  HSEKLA+ +G++++   + IR+ KNLRVC DCH   K +SK+  REI++R
Sbjct: 725 EDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILR 784

Query: 704 DRTRFHHYKDGVCSCKDYW 722
           D  RFH +K+G CSC DYW
Sbjct: 785 DVRRFHRFKNGTCSCGDYW 803



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 177/369 (47%), Gaps = 48/369 (13%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPF-VQTGLVGMYGACG 166
           M+  G+  D ++FP +LKA+A  + +  G Q+H    K G+G D   V   LV +Y  CG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 167 KILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS 226
                  +FD++S R+ V W+ +I        ++  L  F  M   NVEP    L  +++
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 227 ACSR---AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           ACS       L  G+ VH +                           + KG  +  ++  
Sbjct: 121 ACSNLPMPEGLMMGKQVHAY--------------------------GLRKGELNSFIINT 154

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           LV   AM   Y + G++  ++++      +DL+ W+ ++S   +N    EAL+   EM +
Sbjct: 155 LV---AM---YGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 208

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLY------IDKNAFGGDLRVNNAIIDMYAK 397
            G++PD+ T+ SV+ AC+HL +L   + +H Y      +D+N+F     V +A++DMY  
Sbjct: 209 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF-----VGSALVDMYCN 263

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIG 456
           C  + S R VF+ M  R +  W +MI  ++ +   + AL+ F  M++ + +  N  T  G
Sbjct: 264 CKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAG 323

Query: 457 VLYACSHAG 465
           V+ AC  +G
Sbjct: 324 VVPACVRSG 332



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 126/253 (49%), Gaps = 9/253 (3%)

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
           + ++ V+  +V+ Y + G       +FD++ E++ + W+++IS        + AL+ F  
Sbjct: 43  VDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRC 102

Query: 341 MQVCGMKPDKVTMLSVISACAHLGV---LDQAQRIHLYIDKNAFGGDLR--VNNAIIDMY 395
           M    ++P   T++SV++AC++L +   L   +++H Y  +    G+L   + N ++ MY
Sbjct: 103 MLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRK---GELNSFIINTLVAMY 159

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
            K G L S++ +      R++++W +++++   +     AL +  +M  E ++P+  T  
Sbjct: 160 GKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTIS 219

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
            VL ACSH  ++  G+E+ A      ++         +VD++     +     + + M F
Sbjct: 220 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-F 278

Query: 516 APNVVIWGSLMAA 528
              + +W +++A 
Sbjct: 279 DRKIGLWNAMIAG 291



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 115/217 (52%), Gaps = 9/217 (4%)

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD-LRVNNAIIDMYAKCG 399
           M V G+KPD     +++ A A L  ++  ++IH ++ K  +G D + V N ++++Y KCG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
              +  +VF+R+  RN +SW S+I++         AL  F  M DE+++P+  T + V+ 
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 460 ACSHAGLVDE---GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           ACS+  + +    G+++ A    +  +         +V ++G+   L  +  L+ +    
Sbjct: 121 ACSNLPMPEGLMMGKQVHAYGLRKGELNSFI--INTLVAMYGKLGKLASSKVLLGSFG-G 177

Query: 517 PNVVIWGSLMAA-CRVHGEIELAEFAAKQLLQ-LDPD 551
            ++V W +++++ C+    +E  E+  + +L+ ++PD
Sbjct: 178 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 214


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/653 (36%), Positives = 373/653 (57%), Gaps = 32/653 (4%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P       N  +   S +   + AL++   M  E L     +   +L A++ 
Sbjct: 189 ARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSA 248

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              +  G ++HG   + GF S   + T LV MY  CG +  AR +FD M  R++V W+ M
Sbjct: 249 LRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSM 308

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           ID Y QN    E + +F++M    V+P ++ +   L AC+  G+L  G  +H+  ++  +
Sbjct: 309 IDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVE--L 366

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            LD                             +N+ V  +++S Y +  +V+ A  +F +
Sbjct: 367 GLD-----------------------------RNVSVVNSLISMYCKCKEVDTAASMFGK 397

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           +  + L+ W+AMI G+A+N  P +AL  F++M+   +KPD  T +SVI+A A L +   A
Sbjct: 398 LQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHA 457

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + IH  + ++    ++ V  A++DMYAKCG++  AR +F+ M  R+V +W +MI+ +  H
Sbjct: 458 KWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTH 517

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G  + AL  F +M+  +I PNGVTF+ V+ ACSH+GLV+ G + F  M   Y+I    +H
Sbjct: 518 GFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDH 577

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           YG MVDL GRA  L EA + +  MP  P V ++G+++ AC++H  +  AE AA++L +L+
Sbjct: 578 YGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELN 637

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           PD  G  VLL+NIY     W+ VG++R SM  +G+ K   CS +E+ NEV+ F +   +H
Sbjct: 638 PDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAH 697

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
             + +IY  L ++I  +K AGYVPD +  L  +E++ K +++  HSEKLA+ +GL+++  
Sbjct: 698 PDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTA 756

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + I + KNLRVC DCHN  K +S V  REIV+RD  RFHH+K+G CSC DYW
Sbjct: 757 GTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 154/596 (25%), Positives = 271/596 (45%), Gaps = 90/596 (15%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILK--LSHSHHSQNSLLLKLLLTSFSLPTTTP 64
           P      P +  +  CSSL  ++Q    + K  L   H  Q  L+   L   +       
Sbjct: 32  PANVYEHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVS--LFCRYG------ 83

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
            S+  A  +F  I +  + + +  ++  +       AL+ F++M  + +    ++F  +L
Sbjct: 84  -SVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLL 142

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           K       L  G ++HGL  K GF  D F  TGL  MY  C ++ +AR +FD+M  RD+V
Sbjct: 143 KVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLV 202

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ ++ GY QNG+    L + + M   N++P  + +  +L A S    +S G+ +H + 
Sbjct: 203 SWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYA 262

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           + +      ++ + L+ MYA CG ++ A+ LFD +L +N+V   +M+  Y          
Sbjct: 263 MRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAY---------- 312

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                                 +N +P+EA+ +F +M   G+KP  V+++  + ACA LG
Sbjct: 313 ---------------------VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLG 351

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L++ + IH    +     ++ V N++I MY KC  +++A  +F +++ R ++SW +MI 
Sbjct: 352 DLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMIL 411

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS------HA-------------- 464
            FA +G   +AL +F++M+  ++ P+  T++ V+ A +      HA              
Sbjct: 412 GFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDK 471

Query: 465 ------GLVDE---------GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
                  LVD           R IF  M+  +        +  M+D +G     + ALEL
Sbjct: 472 NVFVTTALVDMYAKCGAIMIARLIFDMMSERH-----VTTWNAMIDGYGTHGFGKAALEL 526

Query: 510 VETM---PFAPNVVIWGSLMAACRVHGEIELA-----EFAAKQLLQLDPDHDGALV 557
            E M      PN V + S+++AC   G +E              ++L  DH GA+V
Sbjct: 527 FEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMV 582



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/409 (29%), Positives = 201/409 (49%), Gaps = 51/409 (12%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
           SS     S   QIP PPSR            HR       FL   N  +  + +  P  L
Sbjct: 2   SSQLVQFSTVPQIPNPPSR------------HRH------FLSERNY-IPANVYEHPAAL 42

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
             + R   L E  Q+  L  K G   + F QT LV ++   G + +A  +F+ +  +  V
Sbjct: 43  -LLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNV 101

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            +  M+ G+ +    D+ L  F  M+  +VEP     + +L  C     L  G+ +H  +
Sbjct: 102 LYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           + +  +LD    + L  MYA C                                QV +AR
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCR-------------------------------QVNEAR 190

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            +FD+M E+DL+ W+ +++GY++N   + AL++   M    +KP  +T++SV+ A + L 
Sbjct: 191 KVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALR 250

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
           ++   + IH Y  ++ F   + ++ A++DMYAKCGSLE+AR++F+ M  RNV+SW SMI+
Sbjct: 251 LISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMID 310

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           A+  + + + A++ F KM DE + P  V+ +G L+AC+  G ++ GR I
Sbjct: 311 AYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFI 359


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/626 (39%), Positives = 364/626 (58%), Gaps = 38/626 (6%)

Query: 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
            AL +F  M    + +   SF  ++K  A  + L    Q+H    K GF  D  ++T L+
Sbjct: 278 EALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALM 337

Query: 160 GMYGACGKILDARLMFDKMS-YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
             Y  C  +LDA  +F ++    ++V W+ MI G+ QN   +E ++LF EMK   V P+E
Sbjct: 338 VAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNE 397

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
              S IL+A      +S  E VH  ++  N                              
Sbjct: 398 FTYSVILTALPV---ISPSE-VHAQVVKTNYE---------------------------- 425

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
              ++  V TA++  Y + G+VE+A  +F  + +KD++ WSAM++GYA+    + A+K+F
Sbjct: 426 ---RSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMF 482

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGV-LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
            E+   G+KP++ T  S+++ CA     + Q ++ H +  K+     L V++A++ MYAK
Sbjct: 483 GELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAK 542

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
            G++ESA EVF+R R ++++SW SMI+ +A HG A  AL  F +MK   +  +GVTFIGV
Sbjct: 543 KGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGV 602

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
             AC+HAGLV+EG + F  M  +  I P  EH  CMVDL+ RA  L +A++++E MP   
Sbjct: 603 FAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPA 662

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
              IW +++AACRVH + EL   AA++++ + P+   A VLLSN+YA+   WQ+  ++RK
Sbjct: 663 GSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRK 722

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            M ER + KE   S IE+ N+ Y FL  DRSH   DQIY KL ++ + LK  GY PD   
Sbjct: 723 LMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSY 782

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
            L D++DE K  V+  HSE+LA+ +GLI++ K S + I+KNLRVC DCH  IKL++K+  
Sbjct: 783 VLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEE 842

Query: 698 REIVIRDRTRFHHY-KDGVCSCKDYW 722
           REIV+RD  RFHH+  DGVCSC D+W
Sbjct: 843 REIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 218/487 (44%), Gaps = 46/487 (9%)

Query: 57  FSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTID 116
           +   T + S LY A ++F + P          +   S   R + A ++FL +   G+ +D
Sbjct: 33  YCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMD 92

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
              F  +LK  A     L G Q+H    K GF  D  V T LV  Y       D R +FD
Sbjct: 93  CSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFD 152

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
           +M  R++V W+ +I GY +N + DEVL LF  M+    +P+    +  L   +  G    
Sbjct: 153 EMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGR 212

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G  VH  ++ N +     + ++LI +Y  CG +  A+ LFDK  +K++V   +M+     
Sbjct: 213 GLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI----- 267

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
                                     SGYA N    EAL +F  M++  ++  + +  SV
Sbjct: 268 --------------------------SGYAANGLDLEALGMFYSMRLNYVRLSESSFASV 301

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRN 415
           I  CA+L  L   +++H  + K  F  D  +  A++  Y+KC ++  A  +F+ +    N
Sbjct: 302 IKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGN 361

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V+SWT+MI+ F  +     A+  F++MK + + PN  T+  +L A      V    E+ A
Sbjct: 362 VVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALP----VISPSEVHA 417

Query: 476 SMTNEYNIPPKYEHYG----CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
            +     +   YE        ++D + +   + EA ++   +    ++V W +++A    
Sbjct: 418 QV-----VKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGID-DKDIVAWSAMLAGYAQ 471

Query: 532 HGEIELA 538
            GE E A
Sbjct: 472 TGETEAA 478


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/652 (35%), Positives = 375/652 (57%), Gaps = 37/652 (5%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGL-TIDRFSFPPILKAIARAE 131
           +F ++P       N  I     S   K AL      L+ GL  +D  +   +L A   A 
Sbjct: 207 LFDEMPVRDMGSWNAMISGYCQSGNAKEALT-----LSNGLRAMDSVTVVSLLSACTEAG 261

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
               G+ +H    K G  S+ FV   L+ +Y   G++ D + +FD+M  RD++ W+ +I 
Sbjct: 262 DFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIK 321

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
            Y  N      ++LF+EM++S ++PD + L  + S  S+ G++    +V  F        
Sbjct: 322 AYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFT------- 374

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
                              + KG F    L+++ +  A+V  Y++ G V+ AR +F+ + 
Sbjct: 375 -------------------LRKGWF----LEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCG-MKPDKVTMLSVISACAHLGVLDQAQ 370
             D+I W+ +ISGYA+N    EA++++N M+  G +  ++ T +SV+ AC+  G L Q  
Sbjct: 412 NTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGM 471

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
           ++H  + KN    D+ V  ++ DMY KCG LE A  +F ++ R N + W ++I     HG
Sbjct: 472 KLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHG 531

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
               A++ F +M DE + P+ +TF+ +L ACSH+GLVDEG+  F  M  +Y I P  +HY
Sbjct: 532 HGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHY 591

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
           GCMVD++GRA  L  AL+ +++M   P+  IWG+L++ACRVHG ++L + A++ L +++P
Sbjct: 592 GCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEP 651

Query: 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK 610
           +H G  VLLSN+YA   +W+ V E+R     +G+ K    S +E++N+V  F T +++H 
Sbjct: 652 EHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHP 711

Query: 611 QTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD 670
             +++Y +L  + ++LK  GYVPD    L D+ED+EK  +++ HSE+LA+ + LI++   
Sbjct: 712 MYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAK 771

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + IRI KNLRVC DCH+  K +SK+  REI++RD  RFHH+K+GVCSC DYW
Sbjct: 772 TTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 139/459 (30%), Positives = 234/459 (50%), Gaps = 44/459 (9%)

Query: 106 LKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC 165
           L ML+ GLT D  +FP +LKA      +++G ++H L  K GF  D +V   L+ +Y   
Sbjct: 142 LFMLSSGLTPDYRTFPSVLKA---CRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRY 198

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
             + +AR++FD+M  RD+  W+ MI GY Q+G   E L L   ++      D + +  +L
Sbjct: 199 KAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLL 254

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
           SAC+ AG+ + G  +H + I + +  +  + + LI +YA  G +   + +FD+       
Sbjct: 255 SACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDR------- 307

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
                                   M  +DLI W+++I  Y  N  P  A+ LF EM++  
Sbjct: 308 ------------------------MYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSR 343

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLY-IDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
           ++PD +T++S+ S  + LG +   + +  + + K  F  D+ + NA++ MYAK G ++SA
Sbjct: 344 IQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSA 403

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYACSH 463
           R VF  +   +VISW ++I+ +A +G A  A+  +N M++E  I  N  T++ VL ACS 
Sbjct: 404 RAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQ 463

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
           AG + +G ++   +     +         + D++G+   L +AL L   +P   N V W 
Sbjct: 464 AGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRV-NSVPWN 521

Query: 524 SLMAACRVHGEIELAEFAAKQLLQ--LDPDHDGALVLLS 560
           +L+A    HG  E A    K++L   + PDH   + LLS
Sbjct: 522 TLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 156/298 (52%), Gaps = 16/298 (5%)

Query: 261 TMYANCGCMDMAKGLFDKVL----LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           T++  C  +  AK L  +++    ++N+ +S  +V+ Y   G V  AR  FD +  +D+ 
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVY 118

Query: 317 CWSAMISGYAENNHPQEALKLFNE-MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
            W+ MISGY    +  E ++ F+  M   G+ PD  T  SV+ AC    V+D   +IH  
Sbjct: 119 AWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR--TVID-GNKIHCL 175

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
             K  F  D+ V  ++I +Y++  ++ +AR +F+ M  R++ SW +MI+ +   G+A+ A
Sbjct: 176 ALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEA 235

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
           L   N ++  ++D   VT + +L AC+ AG  + G  I  S + ++ +  +      ++D
Sbjct: 236 LTLSNGLR--AMDS--VTVVSLLSACTEAGDFNRGVTIH-SYSIKHGLESELFVSNKLID 290

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI--ELAEFAAKQLLQLDPD 551
           L+     LR+  ++ + M +  +++ W S++ A  ++ +    ++ F   +L ++ PD
Sbjct: 291 LYAEFGRLRDCQKVFDRM-YVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPD 347


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/623 (37%), Positives = 365/623 (58%), Gaps = 32/623 (5%)

Query: 101 ALKVFLKM-LNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           +++VF  M L  G   D  +   +L A+A  + L  GMQ+  L  K GF S   + TGL+
Sbjct: 14  SIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGLI 73

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
            ++  CG++  ARL+F ++  +D++  + MI G+  NG  ++ + LF+E+  S       
Sbjct: 74  SLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSS 133

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
            +  ++   S  G+      +H F                        C+ +        
Sbjct: 134 TIVGLIPVYSPFGHSYLCNCIHGF------------------------CVKLG------- 162

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
           ++ +  VSTA+ + Y R  ++  AR +FD+  EK L  W+AMISG  +N     A+ LF 
Sbjct: 163 IVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQ 222

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
            MQ   + P+ VT+ S++SACA +G L   + +H  I  N F  ++ V+ A+IDMYAKCG
Sbjct: 223 TMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCG 282

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           S+  ARE+F+ M  +N ++W +MI+ + +HG  + AL  F  M   S+ P G+TF+ VLY
Sbjct: 283 SITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLY 342

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           ACSHAGLV EG  IF +M +++   P  EHY CMVD+ GRA  L++ALE ++ MP  P  
Sbjct: 343 ACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGP 402

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
            +WG+L+ AC +H +  LA  A+++L +LDP++ G  VL+SNIY+ ++++     +R+  
Sbjct: 403 PVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVA 462

Query: 580 KERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
           K++ + K   C+ IE+    + F + D+SH Q+  IY +L+++  ++  AG+  +  + L
Sbjct: 463 KKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVL 522

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
            DLE+EEK   +  HSEKLA+ +GLIS++  + IRI+KNLRVC DCHN+ K +SK+  R 
Sbjct: 523 HDLEEEEKELTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKITKRV 582

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           IV+RD  RFHH+KDG+CSC DYW
Sbjct: 583 IVVRDANRFHHFKDGLCSCGDYW 605



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 179/384 (46%), Gaps = 35/384 (9%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F +I        N  I   + +   + ++++F ++L+ G  +   +   ++   +    
Sbjct: 88  LFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGH 147

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
                 +HG   KLG  S   V T L  +Y    +++ AR +FD+ + + +  W+ MI G
Sbjct: 148 SYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISG 207

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
             QNGL D  ++LF+ M+ +NV P+ + ++ ILSAC++ G LS GE VH  I  N    +
Sbjct: 208 CTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESN 267

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
            ++ + LI MYA CG + +A+ LFD +  KN V   AM+SGY   G              
Sbjct: 268 VYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHG-------------- 313

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
                            H QEALKLF +M    +KP  +T LSV+ AC+H G++ +   I
Sbjct: 314 -----------------HGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGI 356

Query: 373 -HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHG 430
            H  +    F         ++D+  + G L+ A E  + M        W +++ A  IH 
Sbjct: 357 FHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHK 416

Query: 431 DARNALIFFNKMKDESIDPNGVTF 454
           D   A +   K+ +  +DP  + +
Sbjct: 417 DTNLAHVASEKLFE--LDPENIGY 438



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 95/206 (46%), Gaps = 12/206 (5%)

Query: 50  LKLLLTSFSLPTTTPSSLY-------YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHAL 102
           +KL + S S  +T  +++Y       +A  +F +         N  I   + +     A+
Sbjct: 159 VKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAI 218

Query: 103 KVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162
            +F  M    +  +  +   IL A A+   L  G  VH L     F S+ +V T L+ MY
Sbjct: 219 SLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMY 278

Query: 163 GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
             CG I  AR +FD M  ++ V W+ MI GY  +G   E L LF +M  S+V+P  +   
Sbjct: 279 AKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFL 338

Query: 223 KILSACSRAGNLSYGEA-----VHEF 243
            +L ACS AG +  G+      VH+F
Sbjct: 339 SVLYACSHAGLVKEGDGIFHTMVHDF 364


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/718 (34%), Positives = 388/718 (54%), Gaps = 41/718 (5%)

Query: 8   TKPLTLPTSTAISSCSS---LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP 64
            +P     S  +++C+    L   ++ HA +++   + + ++      L+  +S      
Sbjct: 198 VQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIR---TGYDKDVFTANALVDMYS----KL 250

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
             +  A  +F ++P       N FI         +HAL++ L+M + GL  + F+   IL
Sbjct: 251 GDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSIL 310

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           KA A +     G Q+HG   K    SD ++  GLV MY   G + DA+ +FD +  RD+V
Sbjct: 311 KACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLV 370

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ +I G        E L+LF  M+    + +   L+ +L + +    +S    VH   
Sbjct: 371 LWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALA 430

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
                  D+H+ + LI  Y  C C++ A  +F+K                          
Sbjct: 431 EKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEK-------------------------- 464

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                    D+I +++MI+  ++ +H ++A+KLF EM   G+ PD   + S+++ACA L 
Sbjct: 465 -----HGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLS 519

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
             +Q +++H ++ K  F  D+   NA++  YAKCGS+E A   F  +  + V+SW++MI 
Sbjct: 520 AYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIG 579

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
             A HG  + AL  F++M DE I PN +T   VL AC+HAGLVDE +  F SM   + I 
Sbjct: 580 GLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIE 639

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
              EHY CM+DL GRA  L +A+ELV +MPF  N  +WG+L+AA RVH + EL   AA++
Sbjct: 640 RTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEK 699

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           L  L+P+  G  VLL+N YA    W DV ++RK MK+  + KE A S +E+ ++V+ F+ 
Sbjct: 700 LFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIV 759

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            D+SH +   IY KL+E+   +  AGYVP++   L D++  EK  ++  HSE+LA+ + L
Sbjct: 760 GDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFAL 819

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           IS+   + IR+ KNLR+C DCH   K +S + +REI+IRD  RFHH++DG CSC+DYW
Sbjct: 820 ISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 145/541 (26%), Positives = 243/541 (44%), Gaps = 48/541 (8%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P  T  ++  SL      HA +LK       +N LL      SF      P S   A  +
Sbjct: 9   PLLTRYAATQSLLQGAHIHAHLLKSGLFAVFRNHLL------SFYSKCRLPGS---ARRV 59

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F +IP P     +  + A S +  P+ AL  F  M +  +  + F  P +LK    A G 
Sbjct: 60  FDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDA-GF 118

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS-YRDIVPWSVMIDG 192
             G Q+H L    G G D FV   LV MYG  G + +AR++FD+    R+ V W+ ++  
Sbjct: 119 --GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSA 176

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y +N      + +F EM    V+P+E   S +++AC+ + +L  G  VH  +I      D
Sbjct: 177 YVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKD 236

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
               + L+ MY+  G + MA  +F KV                                E
Sbjct: 237 VFTANALVDMYSKLGDIRMAAVVFGKV-------------------------------PE 265

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
            D++ W+A ISG   + H Q AL+L  +M+  G+ P+  T+ S++ ACA  G  +  ++I
Sbjct: 266 TDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQI 325

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H ++ K     D  +   ++DMYAK G L+ A++VF+ + +R+++ W ++I+  +     
Sbjct: 326 HGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQH 385

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
             AL  F +M+ E  D N  T   VL + +    + + R++ A +  +            
Sbjct: 386 AEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHA-LAEKLGFLSDSHVVNG 444

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV--HGEIELAEFAAKQLLQLDP 550
           ++D + + + L  A  + E    + +++ + S++ A     HGE  +  F       LDP
Sbjct: 445 LIDSYWKCDCLNYAYRVFEKHG-SYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDP 503

Query: 551 D 551
           D
Sbjct: 504 D 504



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 211/462 (45%), Gaps = 34/462 (7%)

Query: 73  IFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
           +F +     + VS N  + A   + R  HA+KVF +M+  G+  + F F  ++ A   + 
Sbjct: 157 VFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSR 216

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
            L  G +VH +  + G+  D F    LV MY   G I  A ++F K+   D+V W+  I 
Sbjct: 217 DLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFIS 276

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           G   +G     L L  +MK S + P+   LS IL AC+ +G  + G  +H F++  N   
Sbjct: 277 GCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADS 336

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           D ++   L+ MYA  G +D AK +FD +  ++LV+  A++SG S   Q            
Sbjct: 337 DNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQ------------ 384

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
                                EAL LF  M+  G   ++ T+ +V+ + A L  +   ++
Sbjct: 385 -------------------HAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQ 425

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           +H   +K  F  D  V N +ID Y KC  L  A  VFE+    ++I++TSMI A +    
Sbjct: 426 VHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDH 485

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
             +A+  F +M  + +DP+      +L AC+     ++G+++ A +     +   +    
Sbjct: 486 GEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAG-N 544

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            +V  + +   + +A      +P    VV W +++     HG
Sbjct: 545 ALVYTYAKCGSIEDADLAFSGLP-EKGVVSWSAMIGGLAQHG 585


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/559 (40%), Positives = 345/559 (61%), Gaps = 3/559 (0%)

Query: 167 KILD-ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS--NVEPDEMVLSK 223
           K LD A  + D+     +   + MI  + ++ + ++  + +  +  S  +++PD   ++ 
Sbjct: 54  KYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNF 113

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           ++ AC+       G  VH   I      D H+Q+ LI++YA  GC+D    +F+ +   +
Sbjct: 114 LVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPD 173

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
            V  TAMV+  +R G V  AR +F+ M E+D I W+AMISGYA+    +EAL +F+ MQ+
Sbjct: 174 FVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQL 233

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
            G+K + V M+SV+SAC  LG LDQ +  H YI++N     +R+   ++D+YAKCG +E 
Sbjct: 234 EGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEK 293

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
           A EVF  M  +NV +W+S +N  A++G     L  F+ MK + + PN VTF+ VL  CS 
Sbjct: 294 AMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSV 353

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
            G VDEG+  F SM NE+ I P+ EHYGC+VDL+ RA  L +A+ +++ MP  P+  +W 
Sbjct: 354 VGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWS 413

Query: 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
           SL+ A R++  +EL   A+K++L+L+  + GA VLLSNIYA    W +V  +R+SMK +G
Sbjct: 414 SLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKG 473

Query: 584 ILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLE 643
           + K+  CS +E+N EV+EF   D+SH +  QI     ++   L+ AGY  D    + D++
Sbjct: 474 VRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDID 533

Query: 644 DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIR 703
           +EEK + +  HSEK A+ +G++S K+D  IRIVKNLRVC DCH    ++SK++ REI++R
Sbjct: 534 EEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVR 593

Query: 704 DRTRFHHYKDGVCSCKDYW 722
           DR RFHH+KDG CSC  +W
Sbjct: 594 DRNRFHHFKDGHCSCNGFW 612



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 205/434 (47%), Gaps = 69/434 (15%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG--LTIDRFSFPPIL 124
           L YA  I  +   P     N  IRA   S  P+ +   + ++L+ G  L  D ++   ++
Sbjct: 56  LDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLV 115

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA-------------------- 164
           +A         G+QVHG+  + GF +DP VQTGL+ +Y                      
Sbjct: 116 QACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFV 175

Query: 165 -----------CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN 213
                      CG ++ AR +F+ M  RD + W+ MI GY Q G   E LN+F  M++  
Sbjct: 176 CRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEG 235

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           V+ + + +  +LSAC++ G L  G   H +I  N + +   L +TL+ +YA CG M    
Sbjct: 236 VKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDM---- 291

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
                                      E A  +F  M EK++  WS+ ++G A N   ++
Sbjct: 292 ---------------------------EKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEK 324

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AI 391
            L+LF+ M+  G+ P+ VT +SV+  C+ +G +D+ QR H    +N FG + ++ +   +
Sbjct: 325 CLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQR-HFDSMRNEFGIEPQLEHYGCL 383

Query: 392 IDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKD-ESIDP 449
           +D+YA+ G LE A  + ++M  + +   W+S+++A  ++ +    ++   KM + E+ + 
Sbjct: 384 VDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANH 443

Query: 450 NGVTFIGVLYACSH 463
                +  +YA S+
Sbjct: 444 GAYVLLSNIYADSN 457


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 266/781 (34%), Positives = 413/781 (52%), Gaps = 75/781 (9%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHH-SQNSLLLKLL-LTSFSLPTTTPSSLYY-- 69
           P  T  SS S L  ++  HA++L     H  S   L L+L+ L + S    TP++L+   
Sbjct: 31  PAPTCPSS-SFLRALRCLHARLLTADLLHAPSHPHLTLRLIHLYTLSPDLATPAALFRSD 89

Query: 70  -----------------------ALSIFSQIPAPPSR----VSNKFIRAISWSHRPKHAL 102
                                  A + F  +P  P+R    + N  + A + +     A+
Sbjct: 90  PDPGPVAATSLVAAHAAAGRLRDAAAFFDAVP--PARRDTVLHNAMMSAFARASLAAPAV 147

Query: 103 KVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLEG--MQVHGLGTKLGFGSDPFVQTGLV 159
            VF  +L  G L  D +SF  ++ A+ +   L      Q+H    K G  +   V   L+
Sbjct: 148 SVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALI 207

Query: 160 GMYGACG---------KILD-------------------------ARLMFDKMSYRDIVP 185
            +Y  C          K+LD                         AR +F+++  +  V 
Sbjct: 208 ALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVV 267

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ MI GY Q+G+  +   LF  M    V  DE   + +LSAC+ AG   +G++VH  II
Sbjct: 268 WNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQII 327

Query: 246 --DNNVALDAHL--QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
               N   +A L   + L+T+Y+  G + +AK +FD + LK++V    ++SGY  +G ++
Sbjct: 328 RLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLD 387

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
            A  +F  M  K+ + W  M+SGY      ++ALKLFN+M+   +KP   T    I+AC 
Sbjct: 388 KAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACG 447

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
            LG L   +++H ++ +  F       NA++ MYAKCG++  AR VF  M   + +SW +
Sbjct: 448 ELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNA 507

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI+A   HG  R AL  F++M  E IDP+ ++F+ +L AC+HAGLVDEG   F SM  ++
Sbjct: 508 MISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDF 567

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
            I P  +HY  ++DL GR+  + EA +L++TMPF P   IW ++++ CR +G++E   +A
Sbjct: 568 GISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYA 627

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
           A QL ++ P HDG  +LLSN Y+   RW D   +RK M++RG+ KE  CS IE+ ++++ 
Sbjct: 628 ADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHV 687

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           FL  D  H +  ++Y+ L  + + ++  GYVPD    L D+E  EK  ++  HSEKLA+ 
Sbjct: 688 FLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVG 747

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           +GL+     + + ++KNLR+C DCH  +  +SK   REIV+RD  RFHH+KDG CSC +Y
Sbjct: 748 FGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNY 807

Query: 722 W 722
           W
Sbjct: 808 W 808



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 18/201 (8%)

Query: 5   SQPTKPLTLPTSTAISSCS---SLTHMKQTHAQILK--LSHSHHSQNSLLLKLLLTSFSL 59
           ++  KP     + AI++C    +L H +Q HA +++     S+ + N+LL          
Sbjct: 429 AEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMY------- 481

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
                 ++  A  +F  +P   S   N  I A+      + AL++F +M+ EG+  DR S
Sbjct: 482 --AKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRIS 539

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQ--TGLVGMYGACGKILDARLMFDK 177
           F  IL A   A  + EG   +    K  FG  P       L+ + G  G+I +AR +   
Sbjct: 540 FLTILTACNHAGLVDEGFH-YFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKT 598

Query: 178 MSYRDIVP-WSVMIDGYFQNG 197
           M +      W  ++ G   NG
Sbjct: 599 MPFEPTPSIWEAILSGCRTNG 619


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/591 (38%), Positives = 360/591 (60%), Gaps = 6/591 (1%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD--ARLMFDKMSYRDIVPWSVMIDGYFQ 195
           Q+HG   + G     ++ T L+      G  +D  AR + + + +R+   W+ +I GY  
Sbjct: 67  QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAI 126

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
            G FDE + ++  M+   + P     S +L AC    +L+ G   H            ++
Sbjct: 127 EGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYV 186

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            +T+I MY  C  +D A+ +FD++  ++++  T +++ Y+R G +E A  +F+ +  KD+
Sbjct: 187 GNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDM 246

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + W+AM++G+A+N  PQEAL+ F+ M+  G++ D+VT+   ISACA LG    A R    
Sbjct: 247 VAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQI 306

Query: 376 IDKNAFGGD--LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
             K+ +     + + +A+IDMY+KCG++E A  VF  M  +NV +++SMI   A HG A+
Sbjct: 307 AQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQ 366

Query: 434 NALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
            AL  F+ M  ++ I PN VTF+G L ACSH+GLVD+GR++F SM   + + P  +HY C
Sbjct: 367 EALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTC 426

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           MVDL GR   L+EALEL++TM   P+  +WG+L+ ACR+H   E+AE AA+ L +L+PD 
Sbjct: 427 MVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDI 486

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACS-RIEMNNEVYEFLTADRSHKQ 611
            G  +LLSN+YA    W  V  +RK +KE+G+ K  A S  ++ N ++++F   + +H  
Sbjct: 487 IGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPM 546

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS 671
           +++I +KL E++  L   GY PD+ S   D+ D  KR +++ H+EKLAL + L+++ +DS
Sbjct: 547 SNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDS 606

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            I I+KNLR+C DCH F++L S+V  + I++RD  RFHH++ G CSC D+W
Sbjct: 607 TITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 113/480 (23%), Positives = 199/480 (41%), Gaps = 87/480 (18%)

Query: 3   TLSQPTKPLTLPTSTAISS---CSSLTHMKQTHAQILK--LSHSHHSQNSLLLKLL--LT 55
           T S+ +    L  S+ IS    C +L  +KQ H  +L+  L  S +    +L KL+  LT
Sbjct: 37  TFSEISNQKELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCY----ILTKLIRTLT 92

Query: 56  SFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI 115
              +P        YA  +   +      +    IR  +   +   A+ ++  M  E +T 
Sbjct: 93  KLGVPMDP-----YARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITP 147

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
             F+F  +LKA    + L  G Q H    +L      +V   ++ MY  C  I  AR +F
Sbjct: 148 VSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVF 207

Query: 176 DKMSYRDI-------------------------------VPWSVMIDGYFQNGLFDEVLN 204
           D+M  RD+                               V W+ M+ G+ QN    E L 
Sbjct: 208 DEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALE 267

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH--LQSTLITM 262
            F+ M+ S +  DE+ ++  +SAC++ G   Y +   +    +  +   H  + S LI M
Sbjct: 268 YFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDM 327

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           Y+ CG ++ A  +F  +  KN+   ++M+ G +  G+ ++A  +F  MV +  I      
Sbjct: 328 YSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEI------ 381

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI--HLYIDKNA 380
                                   KP+ VT +  + AC+H G++DQ +++   +Y     
Sbjct: 382 ------------------------KPNTVTFVGALMACSHSGLVDQGRQVFDSMY---QT 414

Query: 381 FGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALI 437
           FG     ++   ++D+  + G L+ A E+ + M    +   W +++ A  IH +   A I
Sbjct: 415 FGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEI 474


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/609 (37%), Positives = 368/609 (60%), Gaps = 38/609 (6%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           +P V   L+ +Y ACG+   AR +FD+++ +++V ++VMI  Y  N L+ + L +++ M 
Sbjct: 53  NPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMY 112

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
                PD      +L A SR+ +L  G  +H  ++   + L+ ++ + LI MY  C  + 
Sbjct: 113 TQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLK 172

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA--------------------------- 303
            A+ + D++  +++V   +MVS Y++ G+  DA                           
Sbjct: 173 EAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVT 232

Query: 304 ----------RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
                     + +F ++ +K +I W+ MI+ Y  N+ P+EA+ L+++M+  G++PD V++
Sbjct: 233 NTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSI 292

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
           +SV+ A   L  L   +R+H + ++     +L + NA+IDMYAKCG L  AR VF +M+ 
Sbjct: 293 VSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQF 352

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           R+V+SWTS+I+A+   G  R+A+  F +M++  ++P+ + F+ VL ACSHAGL+D+GR  
Sbjct: 353 RDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYY 412

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           F  M  E  I PK EH+ C+VDL GRA  + EA   +  MP  P+  +WG L++ACRV+ 
Sbjct: 413 FNLMA-ECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYS 471

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
            + +   AA +LL L+P+H G  VLLSNIYAK  RW DV  +R  M+ +GI K    S +
Sbjct: 472 NMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNV 531

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW 653
           E+N+ V+ FL  D SH Q+ +IYE+L+ ++ ++K  GY+P+  SAL D+E+E+K   +  
Sbjct: 532 ELNDGVHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPETDSALHDVEEEDKEYHLAV 591

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HSEKLA+ + +I++K  + IR+ KNLRVC DCH   KL+SK+  REI+IRD  RFHH+++
Sbjct: 592 HSEKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQE 651

Query: 714 GVCSCKDYW 722
           G CSC DYW
Sbjct: 652 GCCSCGDYW 660



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 193/379 (50%), Gaps = 37/379 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  IF +I        N  IR+   +H  K AL V+  M  +G   D +++P +LKA +R
Sbjct: 73  ARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSR 132

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           ++ L  G+Q+HG   K+G   + +V  GL+ MYG C  + +A+ + D++  RD+V W+ M
Sbjct: 133 SDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSM 192

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR--AGNLSYGEAV-----HE 242
           +  Y QNG F++ L L  EM+  N++P++  ++ +L A +   + N+ Y + +      +
Sbjct: 193 VSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKK 252

Query: 243 FIIDNNVALDAHLQSTL--------------------------ITMYANCGCMDMAKGLF 276
            +I  NV +  ++ +++                          +  Y +   + + + + 
Sbjct: 253 SVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVH 312

Query: 277 D----KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
                K LL NL++  A++  Y++ G + DAR +F+QM  +D++ W+++IS Y +    +
Sbjct: 313 KFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGR 372

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
           +A+ +F EM+  G+ PD +  +SV++AC+H G+LD  +     + +      L     ++
Sbjct: 373 DAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAECGITPKLEHFACVV 432

Query: 393 DMYAKCGSLESAREVFERM 411
           D+  + G ++ A     +M
Sbjct: 433 DLLGRAGKIDEAYGFIRQM 451



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 162/326 (49%), Gaps = 23/326 (7%)

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
            K L D+ L  N  V   ++  Y+  G+   AR IFD++ +K+++ ++ MI  Y  N+  
Sbjct: 42  GKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLY 101

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           ++AL ++  M   G  PD  T   V+ A +    L    +IH  + K     +L V N +
Sbjct: 102 KDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGL 161

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           I MY KC SL+ A++V + +  R+V+SW SM++ +A +G   +AL    +M+  ++ PN 
Sbjct: 162 IAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPND 221

Query: 452 VTFIGVLYACSH--AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
            T   +L A ++  +  V   +E+F  +T +  I      +  M+ ++   ++ +EA+ L
Sbjct: 222 CTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVIS-----WNVMIAMYVNNSMPKEAVVL 276

Query: 510 VETMP---FAPNVVIWGSLMAACRVHGEI-------ELAEFAAKQLLQLDPDHDGALVLL 559
              M      P+VV   S+++    +G++        + +FA ++ L  +   + AL+  
Sbjct: 277 YSQMEANGVEPDVV---SIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALI-- 331

Query: 560 SNIYAKDKRWQDVGELRKSMKERGIL 585
            ++YAK    +D   +   M+ R ++
Sbjct: 332 -DMYAKCGCLRDARAVFNQMQFRDVV 356


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/566 (40%), Positives = 345/566 (60%), Gaps = 10/566 (1%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           ++G Y    +++DAR +FD+M  RD V W+ MI GY QNG   E   LFEE  + +V   
Sbjct: 129 MMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV--- 185

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIID-NNVALDAHLQSTLITMYANCGCMDMAKGLF 276
               + ++S   + G L     V + + + N+V+ +A     +I  Y  C  MD A+ LF
Sbjct: 186 -FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNA-----IIAGYVQCKRMDQARELF 239

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           + +  +N+     M++GY++ G +  AR  FD+M ++D I W+A+I+GYA++ + +EAL 
Sbjct: 240 EAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALH 299

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           LF EM+  G + ++ T  S +S CA +  L+  +++H  + K        V NA++ MY 
Sbjct: 300 LFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYC 359

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KCG+++ A  VFE +  + V+SW +MI  +A HG  + AL+ F  MK   I P+ VT +G
Sbjct: 360 KCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVG 419

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           VL ACSH GLVD+G E F SMT +Y I    +HY CM+DL GRA  L +A  L++ MPF 
Sbjct: 420 VLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFE 479

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
           P+   WG+L+ A R+HG  EL E AAK + +++PD+ G  VLLSN+YA   RW DVG +R
Sbjct: 480 PDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMR 539

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
             M++RG+ K    S +E+ N+++ F   D  H + D+IY  L E+  ++K  GYV    
Sbjct: 540 LRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTK 599

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
             L D+E+EEK  ++ +HSEKLA+ +G+++      IR++KNLRVCEDCHN +K +SK+ 
Sbjct: 600 LVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIV 659

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
            R I++RD  RFHH+  G CSC DYW
Sbjct: 660 GRLIILRDSHRFHHFNGGQCSCGDYW 685



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 152/311 (48%), Gaps = 53/311 (17%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           ARL+FD+M  RD+V W+ M+ GY QNG   E   +F+EM   N                 
Sbjct: 49  ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNS---------------- 92

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
                         I  N  L A++Q+         G ++ A+ LF+      L+    M
Sbjct: 93  --------------ISWNGMLAAYVQN---------GRIEDARRLFESKADWELISWNCM 129

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           + GY +  ++ DAR IFD+M E+D + W+ MISGYA+N    EA +LF E  V     D 
Sbjct: 130 MGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPV----RDV 185

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYI-DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
            T  +++S     G+LD+A+R+   + +KN+        NAII  Y +C  ++ ARE+FE
Sbjct: 186 FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSW-----NAIIAGYVQCKRMDQARELFE 240

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            M  +NV SW +MI  +A +GD   A  FF++M       + +++  ++   + +G  +E
Sbjct: 241 AMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQR----DSISWAAIIAGYAQSGYGEE 296

Query: 470 GREIFASMTNE 480
              +F  M  +
Sbjct: 297 ALHLFVEMKRD 307



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 156/319 (48%), Gaps = 43/319 (13%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D F  T +V  Y   G + +AR +FD M  ++ V W+ +I GY Q    D+   LFE M 
Sbjct: 184 DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMP 243

Query: 211 MSNV---------------------------EPDEMVLSKILSACSRAGNLSYG-EAVHE 242
             NV                           + D +  + I++  +++G   YG EA+H 
Sbjct: 244 CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSG---YGEEALHL 300

Query: 243 FI---IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL----VVSTAMVSGYS 295
           F+    D      +   STL T  A    +++ K +  +V+   L     V  A++  Y 
Sbjct: 301 FVEMKRDGERLNRSTFTSTLSTC-AEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYC 359

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           + G ++DA ++F+ + EK+++ W+ MI+GYA +   +EAL LF  M+  G+ PD VTM+ 
Sbjct: 360 KCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVG 419

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERMR- 412
           V+SAC+H G++D+    + Y     +G   + +    +ID+  + G L+ A+ + + M  
Sbjct: 420 VLSACSHTGLVDKGTE-YFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPF 478

Query: 413 RRNVISWTSMINAFAIHGD 431
             +  +W +++ A  IHG+
Sbjct: 479 EPDAATWGALLGASRIHGN 497



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 6/245 (2%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A + F ++P   S      I   + S   + AL +F++M  +G  ++R +F   L   A 
Sbjct: 266 ARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAE 325

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G QVHG   K G  S  +V   L+ MY  CG I DA ++F+ +  +++V W+ M
Sbjct: 326 IAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTM 385

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDNN 248
           I GY ++G   E L LFE MK + + PD++ +  +LSACS  G +  G E  +    D  
Sbjct: 386 IAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYG 445

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA-GQVE----DA 303
           +  ++   + +I +    G +D A+ L   +  +    +   + G SR  G  E     A
Sbjct: 446 ITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAA 505

Query: 304 RLIFD 308
           ++IF+
Sbjct: 506 KMIFE 510



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 134/259 (51%), Gaps = 18/259 (6%)

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           + G  R   +  ARL+FDQM E+D++ W+AM+SGYA+N + +EA ++F+EM       + 
Sbjct: 37  LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPC----KNS 92

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           ++   +++A    G ++ A+R  L+  K  +  +L   N ++  Y K   L  AR +F+R
Sbjct: 93  ISWNGMLAAYVQNGRIEDARR--LFESKADW--ELISWNCMMGGYVKRNRLVDARGIFDR 148

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M  R+ +SW +MI+ +A +G+   A   F    +ES   +  T+  ++      G++DE 
Sbjct: 149 MPERDEVSWNTMISGYAQNGELLEAQRLF----EESPVRDVFTWTAMVSGYVQNGMLDEA 204

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
           R +F  M  + ++      +  ++  + +   + +A EL E MP   NV  W +++    
Sbjct: 205 RRVFDGMPEKNSVS-----WNAIIAGYVQCKRMDQARELFEAMP-CQNVSSWNTMITGYA 258

Query: 531 VHGEIELAEFAAKQLLQLD 549
            +G+I  A     ++ Q D
Sbjct: 259 QNGDIAQARNFFDRMPQRD 277


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/509 (42%), Positives = 335/509 (65%), Gaps = 3/509 (0%)

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           PD +    ++ AC++  N   G   H   I +    D ++Q++L+ MYA+ G ++ A+ +
Sbjct: 115 PDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSV 174

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           F ++   ++V  T M++GY R G  + AR +FD+M E++L+ WS MISGYA NN  ++A+
Sbjct: 175 FQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAV 234

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           + F  +Q  G+  ++  M+ VIS+CAHLG L   ++ H Y+ +N    +L +  A++DMY
Sbjct: 235 ETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMY 294

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           A+CG++E A  VFE++  ++V+ WT++I   A+HG A  AL +F++M  +   P  +TF 
Sbjct: 295 ARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFT 354

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
            VL ACSHAG+V+ G EIF SM  ++ + P+ EHYGCMVDL GRA  LR+A + V  MP 
Sbjct: 355 AVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPV 414

Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575
            PN  IW +L+ ACR+H  +E+ E   K LL++ P++ G  VLLSNIYA+  +W+DV  +
Sbjct: 415 KPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVM 474

Query: 576 RKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNE--VISELKPAGYVP 633
           R+ MK++G+ K    S IE++ +V+EF   D++H + ++I E++ E  ++ ++K AGYV 
Sbjct: 475 RQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPEIEKI-ERIWEDIILPKIKLAGYVG 533

Query: 634 DIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVS 693
           +    + D+++EEK   +  HSEKLA+ YG++  +  + IRIVKNLRVCEDCH   KL+S
Sbjct: 534 NTAETMFDIDEEEKEGALHRHSEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLIS 593

Query: 694 KVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KV+  E+++RDR RFHH+K+G CSC DYW
Sbjct: 594 KVFEVELIVRDRNRFHHFKEGTCSCMDYW 622



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 214/439 (48%), Gaps = 71/439 (16%)

Query: 31  THAQILKLSHSHHSQNSLLLKLL----LTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSN 86
           ++A+ LK+ H+H  +  L   +     L +F + +TT + L+YA+ + SQI  P   + N
Sbjct: 28  SNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTT-NLLHYAIRVASQIQNPNLFIYN 86

Query: 87  KFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKL 146
             IR  S S  P+++   ++K L  GL  D  + P ++KA A+ E    GMQ HG   K 
Sbjct: 87  ALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKH 146

Query: 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV------------------ 188
           GF  D +VQ  LV MY + G I  AR +F +M   D+V W+                   
Sbjct: 147 GFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELF 206

Query: 189 -------------MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
                        MI GY +N  F++ +  FE ++   V  +E V+  ++S+C+  G L+
Sbjct: 207 DRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALA 266

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            GE  HE+++ N ++L+  L + ++ MYA CG ++ A  +F+++  K+++  TA+++G +
Sbjct: 267 MGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLA 326

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
                                     + GYAE     +AL  F+EM   G  P  +T  +
Sbjct: 327 --------------------------MHGYAE-----KALWYFSEMAKKGFVPRDITFTA 355

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR- 412
           V++AC+H G++++   I   + ++  G + R+ +   ++D+  + G L  A +   +M  
Sbjct: 356 VLTACSHAGMVERGLEIFESMKRD-HGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPV 414

Query: 413 RRNVISWTSMINAFAIHGD 431
           + N   W +++ A  IH +
Sbjct: 415 KPNAPIWRALLGACRIHKN 433



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 169/390 (43%), Gaps = 80/390 (20%)

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +  Q+   +L  ++A+I G + + +P+ +   + +    G+ PD +T   ++ ACA L  
Sbjct: 73  VASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLEN 132

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
                + H    K+ F  D  V N+++ MYA  G + +AR VF+RM R +V+SWT MI  
Sbjct: 133 APMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAG 192

Query: 426 FAIHGDARNALIFFNKMKD-------------------------------ESIDPNGVTF 454
           +   GDA++A   F++M +                               E +  N    
Sbjct: 193 YHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVM 252

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY----GCMVDLFGRANLLREALELV 510
           +GV+ +C+H G +  G +      +EY +  K          +VD++ R   + +A+ + 
Sbjct: 253 VGVISSCAHLGALAMGEK-----AHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVF 307

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIE-----LAEFAAKQLLQLDPDHDGALVLLSN---- 561
           E +P   +V+ W +L+A   +HG  E      +E A K  +  D      L   S+    
Sbjct: 308 EQLP-EKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMV 366

Query: 562 -----IYAKDKRWQDV-----------------GELRKSMKERGILKERACSRIEMNNEV 599
                I+   KR   V                 G+LRK+  E+ +LK      ++ N  +
Sbjct: 367 ERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKA--EKFVLK----MPVKPNAPI 420

Query: 600 YE-FLTADRSHKQTDQIYEKLNEVISELKP 628
           +   L A R HK   ++ E++ +++ E++P
Sbjct: 421 WRALLGACRIHKNV-EVGERVGKILLEMQP 449


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 367/659 (55%), Gaps = 38/659 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F QIP P     N  I A +       AL +F  M   GL +D F+   ++ A   
Sbjct: 93  AHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCD 152

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS-YRDIVPWSV 188
             GL+   Q+H +    GF S   V   L+  YG  G + DA+ +F  M   RD V W+ 
Sbjct: 153 DVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNS 210

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI  Y Q+    + L LF+EM    +  D   L+ +L+A +   +LS G   H  +I   
Sbjct: 211 MIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTG 270

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              ++H+ S LI +Y+ CG                              G + D R +F+
Sbjct: 271 FHQNSHVGSGLIDLYSKCG------------------------------GGMSDCRKVFE 300

Query: 309 QMVEKDLICWSAMISGYAENNH-PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
           ++ E DL+ W+ M+SGY++N    ++AL+ F +MQ  G +P+  + + VISAC++L    
Sbjct: 301 EITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPS 360

Query: 368 QAQRIH-LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           Q ++IH L +  +     + V+NA+I MY+KCG+L+ AR +F+RM   N +S  SMI  +
Sbjct: 361 QGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGY 420

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           A HG    +L  F  M +  I P  +TFI VL AC+H G V+EG   F  M  ++NI P+
Sbjct: 421 AQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPE 480

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            EHY CM+DL GRA  L EA  L+  MPF P  + W SL+ ACR HG IELA  AA Q+L
Sbjct: 481 AEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVL 540

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           QL+P +    V+LSN+YA   RW++V  +RK M++RG+ K+  CS IE+   ++ F+  D
Sbjct: 541 QLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAED 600

Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV--DLEDEEKREVILW-HSEKLALCYG 663
            SH    +IYE L E+  ++K AGYVPD+  ALV  D     ++E+ L  HSEKLA+ +G
Sbjct: 601 SSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFG 660

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LIS+K    + +VKNLR+C DCHN IK +S +  REI +RD  RFH +K+G CSC DYW
Sbjct: 661 LISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 201/428 (46%), Gaps = 18/428 (4%)

Query: 114 TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
           T+ RF    +LK       L  G  +H L  K       +     + +Y  CG++  AR 
Sbjct: 7   TLQRFRH--LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARK 64

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
            F  +S  ++  ++ +I  Y +         LF+++     EPD +  + ++SA +  G 
Sbjct: 65  AFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIP----EPDLVSYNTLISAYADCGE 120

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN----LVVSTA 289
            +    +   + +  + +D    S +IT  A C  + +   L    +       + V+ A
Sbjct: 121 TAPALGLFSGMREMGLDMDXFTLSAVIT--ACCDDVGLIGQLHSVAVSSGFDSYVSVNNA 178

Query: 290 MVSGYSRAGQVEDARLIFDQMVE-KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
           +++ Y + G ++DA+ +F  M   +D + W++MI  Y ++    +AL LF EM   G+  
Sbjct: 179 LLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNV 238

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC-GSLESAREV 407
           D  T+ SV++A   L  L    + H  + K  F  +  V + +ID+Y+KC G +   R+V
Sbjct: 239 DMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKV 298

Query: 408 FERMRRRNVISWTSMINAFAIHGD-ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL 466
           FE +   +++ W +M++ ++ + +   +AL  F +M+     PN  +F+ V+ ACS+   
Sbjct: 299 FEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSS 358

Query: 467 VDEGREIFASMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
             +G++I  S+  + +IP  +      ++ ++ +   L++A  L + M    N V   S+
Sbjct: 359 PSQGKQIH-SLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSM 416

Query: 526 MAACRVHG 533
           +A    HG
Sbjct: 417 IAGYAQHG 424


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/441 (49%), Positives = 300/441 (68%)

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           K+LV  TAM++ Y++ G +++AR++FD + E+D ICW+ MI GYA++  P E L LF +M
Sbjct: 4   KSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQM 63

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
               ++P++VT+L+V+SAC   G L+  + +H YI+ N  G ++RV  ++IDMY+KCGSL
Sbjct: 64  LNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSL 123

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
           E AR VFER+  ++V++W SM+  +A+HG +++AL  F +M      P  +TFIGVL AC
Sbjct: 124 EDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNAC 183

Query: 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI 521
           SHAGLV EG + F SM +EY I PK EHYGCMV+L GRA  L EA ELV+ M    + V+
Sbjct: 184 SHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVL 243

Query: 522 WGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581
           WG+L+ ACR+HG I L E  A+ L+  +  + G  VLLSNIYA    W+ V  +R  MKE
Sbjct: 244 WGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKE 303

Query: 582 RGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVD 641
            G  KE  CS IE+NN+V+EFL  D  H ++ +IYE L E+   LK  GY P     L D
Sbjct: 304 SGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHD 363

Query: 642 LEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIV 701
           LED +K   +  HSEKLAL +GLI++K  + I+IVKNLRVC DCH   KL+SK+  R++V
Sbjct: 364 LEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVV 423

Query: 702 IRDRTRFHHYKDGVCSCKDYW 722
           +RDR RFHH+ +G+CSC DYW
Sbjct: 424 MRDRNRFHHFVNGLCSCGDYW 444



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 153/279 (54%), Gaps = 35/279 (12%)

Query: 156 TGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
           T ++  Y   G I +AR++FD +  RD + W+VMIDGY Q+GL +E L LF +M  + V 
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           P+E+ +  +LSAC + G L  G  VH +I +N + ++  + ++LI MY+ CG ++ A+ +
Sbjct: 70  PNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLV 129

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           F+++  K++V   +MV GY+  G                                 Q+AL
Sbjct: 130 FERISNKDVVAWNSMVVGYAMHG-------------------------------FSQDAL 158

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIID 393
           +LF EM + G +P  +T + V++AC+H G++ +  +   Y  K+ +G + +V +   +++
Sbjct: 159 RLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKF-FYSMKDEYGIEPKVEHYGCMVN 217

Query: 394 MYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD 431
           +  + G LE A E+ + M   ++ + W +++ A  +HG+
Sbjct: 218 LLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGN 256



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 76/140 (54%)

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           P   L +F +MLN  +  +  +   +L A  +   L  G  VH      G G +  V T 
Sbjct: 53  PNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTS 112

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+ MY  CG + DARL+F+++S +D+V W+ M+ GY  +G   + L LF+EM M   +P 
Sbjct: 113 LIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPT 172

Query: 218 EMVLSKILSACSRAGNLSYG 237
           ++    +L+ACS AG +S G
Sbjct: 173 DITFIGVLNACSHAGLVSEG 192


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/739 (34%), Positives = 404/739 (54%), Gaps = 59/739 (7%)

Query: 4   LSQPTKPLTLPTSTAISSCSSL------THMKQTHAQILKLSHSHHSQNSLLLKLLLTSF 57
           L +  +P +    + +++CS+L         KQ HA  L+        NS ++  L+  +
Sbjct: 191 LDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR----KGELNSFIINTLVAMY 246

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117
                  SS      +            N  + ++  + +   AL+   +M+ EG+  D 
Sbjct: 247 GKLGKLASSKV----LLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDE 302

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLG-FGSDPFVQTGLVGMYGACGKILDARLMFD 176
           F+   +L A +  E L  G ++H    K G    + FV + LV MY  C ++L  R +FD
Sbjct: 303 FTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFD 362

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACSRAGNLS 235
            M  R I  W+ MI GY QN    E L LF  M+ S  +  +   ++ ++ AC R+G  S
Sbjct: 363 GMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFS 422

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
             EA+H F++   +  D  +Q+TL         MDM                      YS
Sbjct: 423 RKEAIHGFVVKRGLDRDRFVQNTL---------MDM----------------------YS 451

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ-----------VC 344
           R G+++ A  IF +M ++DL+ W+ MI+GY  + H ++AL L ++MQ             
Sbjct: 452 RLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRV 511

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
            +KP+ +T+++++ +CA L  L + + IH Y  KN    D+ V +A++DMYAKCG L+ +
Sbjct: 512 SLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMS 571

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
           R+VF+++ ++NVI+W  +I A+ +HG+ + A+     M  + + PN VTFI V  ACSH+
Sbjct: 572 RKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHS 631

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV-IWG 523
           G+VDEG  IF  M  +Y + P  +HY C+VDL GRA  ++EA +L+  MP   N    W 
Sbjct: 632 GMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWS 691

Query: 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
           SL+ A R+H  +E+ E AA+ L+QL+P+     VLL+NIY+    W    E+R++MKE+G
Sbjct: 692 SLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQG 751

Query: 584 ILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLE 643
           + KE  CS IE  +EV++F+  D SH Q++++   L  +   ++  GYVPD    L ++E
Sbjct: 752 VRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVE 811

Query: 644 DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIR 703
           ++EK  ++  HSEKLA+ +G++++   + IR+ KNLRVC DCH   K +SK+  REI++R
Sbjct: 812 EDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILR 871

Query: 704 DRTRFHHYKDGVCSCKDYW 722
           D  RFH +K+G CSC DYW
Sbjct: 872 DVRRFHRFKNGTCSCGDYW 890



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 211/445 (47%), Gaps = 56/445 (12%)

Query: 33  AQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIF-SQIPAPPSRVSNKFIRA 91
           +Q+L  S   H     LL+   TS +      S++  A SIF SQ  +P   +    +R+
Sbjct: 19  SQLLPFSRHKHP---YLLRATPTSAT--EDVASAVSGAPSIFISQSRSPEWWID--LLRS 71

Query: 92  ISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSD 151
              S+  + A+  ++ M+  G+  D ++FP +LKA+A  + +  G Q+H    K G+G D
Sbjct: 72  KVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVD 131

Query: 152 PF-VQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
              V   LV +Y  CG       +FD++S R+ V W+ +I        ++  L  F  M 
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 191

Query: 211 MSNVEPDEMVLSKILSACSR---AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
             NVEP    L  +++ACS       L  G+ VH +                        
Sbjct: 192 DENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY------------------------ 227

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
              + KG  +  ++  LV   AM   Y + G++  ++++      +DL+ W+ ++S   +
Sbjct: 228 --GLRKGELNSFIINTLV---AM---YGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 279

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY------IDKNAF 381
           N    EAL+   EM + G++PD+ T+ SV+ AC+HL +L   + +H Y      +D+N+F
Sbjct: 280 NEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 339

Query: 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNK 441
                V +A++DMY  C  + S R VF+ M  R +  W +MI  ++ +   + AL+ F  
Sbjct: 340 -----VGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIG 394

Query: 442 MKDES-IDPNGVTFIGVLYACSHAG 465
           M++ + +  N  T  GV+ AC  +G
Sbjct: 395 MEESAGLLANSTTMAGVVPACVRSG 419



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/348 (19%), Positives = 154/348 (44%), Gaps = 39/348 (11%)

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W  ++    ++ L  E +  + +M +  ++PD      +L A +   ++  G+ +H  + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
                +D+                              + V+  +V+ Y + G       
Sbjct: 125 KFGYGVDS------------------------------VTVANTLVNLYRKCGDFGAVYK 154

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +FD++ E++ + W+++IS        + AL+ F  M    ++P   T++SV++AC++L +
Sbjct: 155 VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM 214

Query: 366 ---LDQAQRIHLYIDKNAFGGDLR--VNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
              L   +++H Y  +    G+L   + N ++ MY K G L S++ +      R++++W 
Sbjct: 215 PEGLMMGKQVHAYGLRK---GELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 271

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +++++   +     AL +  +M  E ++P+  T   VL ACSH  ++  G+E+ A     
Sbjct: 272 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 331

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
            ++         +VD++     +     + + M F   + +W +++A 
Sbjct: 332 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 127/245 (51%), Gaps = 19/245 (7%)

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W  ++     +N  +EA+  + +M V G+KPD     +++ A A L  ++  ++IH ++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 378 KNAFGGD-LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
           K  +G D + V N ++++Y KCG   +  +VF+R+  RN +SW S+I++         AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE---GREIFA-----SMTNEYNIPPKYE 488
             F  M DE+++P+  T + V+ ACS+  + +    G+++ A        N + I     
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII----- 239

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA-CRVHGEIELAEFAAKQLLQ 547
               +V ++G+   L  +  L+ +     ++V W +++++ C+    +E  E+  + +L+
Sbjct: 240 --NTLVAMYGKLGKLASSKVLLGSFG-GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLE 296

Query: 548 -LDPD 551
            ++PD
Sbjct: 297 GVEPD 301


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/719 (35%), Positives = 386/719 (53%), Gaps = 45/719 (6%)

Query: 9   KPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT--T 63
           +P     S  +++C+   ++   +Q HA ++++ +          K + T+ +L      
Sbjct: 199 QPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYD---------KDVFTANALVDMYMK 249

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
              +  A  IF ++P       N  I     +     A+++ L+M   GL  + F+   I
Sbjct: 250 MGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSI 309

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           LKA + A     G Q+HG   K    SD ++  GLV MY     + DAR +FD M +RD+
Sbjct: 310 LKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDL 369

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           +  + +I G    G  DE L+LF E++   +  +   L+ +L + +     S    VH  
Sbjct: 370 ILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHAL 429

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
            +      DAH+ + LI  Y  C C+                                DA
Sbjct: 430 AVKIGFIFDAHVVNGLIDSYWKCSCL-------------------------------SDA 458

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
             +F++    D+I  ++MI+  ++ +H + A+KLF EM   G++PD   + S+++ACA L
Sbjct: 459 NRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASL 518

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
              +Q +++H ++ K  F  D    NA++  YAKCGS+E A   F  +  R V+SW++MI
Sbjct: 519 SAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMI 578

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
              A HG  + AL  F +M DE I+PN +T   VL AC+HAGLVDE +  F SM   + I
Sbjct: 579 GGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGI 638

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
               EHY CM+DL GRA  L +A+ELV +MPF  N  IWG+L+ A RVH + EL + AA+
Sbjct: 639 DRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAE 698

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
           +L  L+P+  G  VLL+N YA    W +V ++RK MK+  I KE A S IE+ ++V+ F+
Sbjct: 699 KLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFI 758

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYG 663
             D+SH  T +IY KL E+   +  AG+VP++   L DL+  EK  ++  HSE+LA+ + 
Sbjct: 759 VGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFA 818

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           L+S+   + IR+ KNLR+C DCH   K +SK+ +REI+IRD  RFHH++DG CSC DYW
Sbjct: 819 LLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 142/538 (26%), Positives = 244/538 (45%), Gaps = 48/538 (8%)

Query: 17  TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
           T  ++  +L      HA +LK       +N L+      SF      P     A   F +
Sbjct: 12  TRYAAAQALLPGAHLHASLLKSGSLASFRNHLI------SFYSKCRRPCC---ARRFFDE 62

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
           IP P     +  + A S +  P+ A++ F  M  EG+  + F+ P +LK +  A     G
Sbjct: 63  IPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAR---LG 119

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM-SYRDIVPWSVMIDGYFQ 195
            QVH +    GFGSD FV   LV MYG  G + DAR +F++  S R+ V W+ ++  Y +
Sbjct: 120 AQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVK 179

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           N    + + +F EM  S ++P E   S +++AC+ + N+  G  VH  ++      D   
Sbjct: 180 NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFT 239

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            + L+ MY   G +D+A  +F+K                               M + D+
Sbjct: 240 ANALVDMYMKMGRVDIASVIFEK-------------------------------MPDSDV 268

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + W+A+ISG   N H   A++L  +M+  G+ P+  T+ S++ AC+  G  D  ++IH +
Sbjct: 269 VSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGF 328

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
           + K     D  +   ++DMYAK   L+ AR+VF+ M  R++I   ++I+  +  G    A
Sbjct: 329 MIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEA 388

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
           L  F +++ E +  N  T   VL + +        R++ A       I   +   G ++D
Sbjct: 389 LSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNG-LID 447

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRV--HGEIELAEFAAKQLLQLDPD 551
            + + + L +A  + E    + +++   S++ A     HGE  +  F       L+PD
Sbjct: 448 SYWKCSCLSDANRVFEECS-SGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPD 504



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 126/486 (25%), Positives = 223/486 (45%), Gaps = 36/486 (7%)

Query: 70  ALSIFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           A  +F++  +  + VS N  + A   + +   A++VF +M+  G+    F F  ++ A  
Sbjct: 154 ARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACT 213

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
            +  +  G QVH +  ++G+  D F    LV MY   G++  A ++F+KM   D+V W+ 
Sbjct: 214 GSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNA 273

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I G   NG     + L  +MK S + P+   LS IL ACS AG    G  +H F+I  N
Sbjct: 274 LISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKAN 333

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D ++   L+ MYA    +D A+ +FD +  ++L++  A++SG S  G+ +       
Sbjct: 334 ADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHD------- 386

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
                                   EAL LF E++  G+  ++ T+ +V+ + A L     
Sbjct: 387 ------------------------EALSLFYELRKEGLGVNRTTLAAVLKSTASLEAAST 422

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            +++H    K  F  D  V N +ID Y KC  L  A  VFE     ++I+ TSMI A + 
Sbjct: 423 TRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQ 482

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
                 A+  F +M  + ++P+      +L AC+     ++G+++ A +     +   + 
Sbjct: 483 CDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFA 542

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA--ACRVHGEIELAEFAAKQLL 546
               +V  + +   + +A     ++P    VV W +++   A   HG+  L  F      
Sbjct: 543 G-NALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFGRMVDE 600

Query: 547 QLDPDH 552
            ++P+H
Sbjct: 601 GINPNH 606


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 367/659 (55%), Gaps = 38/659 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F QIP P     N  I A +       AL +F  M   GL +D F+   ++ A   
Sbjct: 93  AHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCD 152

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS-YRDIVPWSV 188
             GL+   Q+H +    GF S   V   L+  YG  G + DA+ +F  M   RD V W+ 
Sbjct: 153 DVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNS 210

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI  Y Q+    + L LF+EM    +  D   L+ +L+A +   +LS G   H  +I   
Sbjct: 211 MIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTG 270

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              ++H+ S LI +Y+ CG                              G + D R +F+
Sbjct: 271 FHQNSHVGSGLIDLYSKCG------------------------------GGMSDCRKVFE 300

Query: 309 QMVEKDLICWSAMISGYAENNH-PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
           ++ E DL+ W+ M+SGY++N    ++AL+ F +MQ  G +P+  + + VISAC++L    
Sbjct: 301 EITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPS 360

Query: 368 QAQRIH-LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           Q ++IH L +  +     + V+NA+I MY+KCG+L+ AR +F+RM   N +S  SMI  +
Sbjct: 361 QGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGY 420

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           A HG    +L  F  M +  I P  +TFI VL AC+H G V+EG   F  M  ++NI P+
Sbjct: 421 AQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPE 480

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            EHY CM+DL GRA  L EA  L+  MPF P  + W SL+ ACR HG IELA  AA Q+L
Sbjct: 481 AEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVL 540

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           QL+P +    V+LSN+YA   RW++V  +RK M++RG+ K+  CS IE+   ++ F+  D
Sbjct: 541 QLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAED 600

Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV--DLEDEEKREVILW-HSEKLALCYG 663
            SH    +IYE L E+  ++K AGYVPD+  ALV  D     ++E+ L  HSEKLA+ +G
Sbjct: 601 SSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFG 660

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LIS+K    + +VKNLR+C DCHN IK +S +  REI +RD  RFH +K+G CSC DYW
Sbjct: 661 LISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 201/428 (46%), Gaps = 18/428 (4%)

Query: 114 TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
           T+ RF    +LK       L  G  +H L  K       +     + +Y  CG++  AR 
Sbjct: 7   TLQRFRH--LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARK 64

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
            F  +S  ++  ++ +I  Y +         LF+++     EPD +  + ++SA +  G 
Sbjct: 65  AFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIP----EPDLVSYNTLISAYADCGE 120

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN----LVVSTA 289
            +    +   + +  + +D    S +IT  A C  + +   L    +       + V+ A
Sbjct: 121 TAPALGLFSGMREMGLDMDGFTLSAVIT--ACCDDVGLIGQLHSVAVSSGFDSYVSVNNA 178

Query: 290 MVSGYSRAGQVEDARLIFDQMVE-KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
           +++ Y + G ++DA+ +F  M   +D + W++MI  Y ++    +AL LF EM   G+  
Sbjct: 179 LLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNV 238

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC-GSLESAREV 407
           D  T+ SV++A   L  L    + H  + K  F  +  V + +ID+Y+KC G +   R+V
Sbjct: 239 DMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKV 298

Query: 408 FERMRRRNVISWTSMINAFAIHGD-ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL 466
           FE +   +++ W +M++ ++ + +   +AL  F +M+     PN  +F+ V+ ACS+   
Sbjct: 299 FEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSS 358

Query: 467 VDEGREIFASMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
             +G++I  S+  + +IP  +      ++ ++ +   L++A  L + M    N V   S+
Sbjct: 359 PSQGKQIH-SLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSM 416

Query: 526 MAACRVHG 533
           +A    HG
Sbjct: 417 IAGYAQHG 424


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/658 (35%), Positives = 370/658 (56%), Gaps = 32/658 (4%)

Query: 66   SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
            S+  A S+F Q+        N  I   + S   + ++ +F+ +L + L  D+F+   +L+
Sbjct: 985  SVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLR 1044

Query: 126  AIARAEG-LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            A +  EG      Q+H    K G   D FV T L+ +Y   GK+ +A  +F      D+ 
Sbjct: 1045 ACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLA 1104

Query: 185  PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
             W+ ++ GY  +G F + L L+  M+ S    D++ L     A      L  G+ +H  +
Sbjct: 1105 SWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVV 1164

Query: 245  IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
            +     LD  + S ++ MY  CG                               ++E AR
Sbjct: 1165 VKRGFNLDLFVTSGVLDMYLKCG-------------------------------EMESAR 1193

Query: 305  LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
             +F ++   D + W+ MISG  EN   + AL  +++M++  ++PD+ T  +++ AC+ L 
Sbjct: 1194 RVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLT 1253

Query: 365  VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
             L+Q ++IH  I K     D  V  +++DMYAKCG++E AR +F+R   R + SW +MI 
Sbjct: 1254 ALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIV 1313

Query: 425  AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
              A HG+A+ AL FF  MK   + P+ VTFIGVL ACSH+GLV E  E F SM   Y I 
Sbjct: 1314 GLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIE 1373

Query: 485  PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
            P+ EHY C+VD   RA  + EA +++ +MPF  +  ++ +L+ ACRV  + E  +  A++
Sbjct: 1374 PEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEK 1433

Query: 545  LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
            LL L+P    A VLLSN+YA   +W++V   R  M++  + K+   S +++ N+V+ F+ 
Sbjct: 1434 LLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVA 1493

Query: 605  ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
             DRSH++TD IY K+  ++  ++  GYVPD   ALVD+E+E+K   + +HSEKLA+ YGL
Sbjct: 1494 GDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGL 1553

Query: 665  ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + +   + +R++KNLRVC DCH+ IK +SKV+ REIV+RD  RFHH+++G+CSC DYW
Sbjct: 1554 MKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 135/543 (24%), Positives = 243/543 (44%), Gaps = 76/543 (13%)

Query: 101  ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
            A+  F+ M+N  +  D  +F  +L  +A    L  G Q+HG+  + G      V   L+ 
Sbjct: 919  AVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLIN 978

Query: 161  MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
            MY   G +  AR +F +M+  D++ W+ MI G   +GL +  + +F  +   ++ PD+  
Sbjct: 979  MYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFT 1038

Query: 221  LSKILSACSR-AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
            ++ +L ACS   G       +H   +   V LD+                          
Sbjct: 1039 VASVLRACSSLEGGYYLATQIHACAMKAGVVLDS-------------------------- 1072

Query: 280  LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
                  VSTA++  YS+ G++E+A  +F      DL  W+A++ GY  +    +AL+L+ 
Sbjct: 1073 -----FVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYI 1127

Query: 340  EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
             MQ  G + D++T+++   A   L  L Q ++IH  + K  F  DL V + ++DMY KCG
Sbjct: 1128 LMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCG 1187

Query: 400  SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
             +ESAR VF  +   + ++WT+MI+    +G   +AL  +++M+   + P+  TF  ++ 
Sbjct: 1188 EMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVK 1247

Query: 460  ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
            ACS    +++GR+I A++  + N          +VD++ +   + +A  L +       +
Sbjct: 1248 ACSLLTALEQGRQIHANIV-KLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTN-TRRI 1305

Query: 520  VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
              W +++     HG        AK+ LQ                             K M
Sbjct: 1306 ASWNAMIVGLAQHGN-------AKEALQ---------------------------FFKYM 1331

Query: 580  KERGILKER--------ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY 631
            K RG++ +R        ACS   + +E YE   + + +   +   E  + ++  L  AG 
Sbjct: 1332 KSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGR 1391

Query: 632  VPD 634
            + +
Sbjct: 1392 IEE 1394



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 143/580 (24%), Positives = 254/580 (43%), Gaps = 58/580 (10%)

Query: 21   SCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAP 80
            + S L+  K+ HA+IL    S H  +  +   L+T ++       SL  A  +F   P  
Sbjct: 668  AASDLSLGKRAHARILT---SGHHPDRFVTNNLITMYA----KCGSLSSARKLFDTTPDT 720

Query: 81   PSRVS--NKFIRAISWSHRPKH-ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
               +   N  + A++      H    +F  +    ++  R +  P+ K    +       
Sbjct: 721  NRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASE 780

Query: 138  QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
             +HG   K+G   D FV   LV +Y   G I +AR++FD M+ RD+V W+VM+  Y    
Sbjct: 781  SLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTC 840

Query: 198  LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL-------SYG------------- 237
            L  E + LF E   +   PD++ L  +        N+       +Y              
Sbjct: 841  LEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDV 900

Query: 238  -----------------EAVHEFI--IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
                             EAV  F+  I++ VA D      ++T+ A   C+++ K +   
Sbjct: 901  IVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGI 960

Query: 279  VLLKNL----VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
            V+   L     V   +++ Y +AG V  AR +F QM E DLI W+ MISG   +   + +
Sbjct: 961  VMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECS 1020

Query: 335  LKLFNEMQVCGMKPDKVTMLSVISACAHL-GVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
            + +F  +    + PD+ T+ SV+ AC+ L G    A +IH    K     D  V+ A+ID
Sbjct: 1021 VGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALID 1080

Query: 394  MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
            +Y+K G +E A  +F      ++ SW ++++ + + GD   AL  +  M++     + +T
Sbjct: 1081 VYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQIT 1140

Query: 454  FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
             +    A      + +G++I A +         +   G ++D++ +   +  A  +   +
Sbjct: 1141 LVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSG-VLDMYLKCGEMESARRVFSEI 1199

Query: 514  PFAPNVVIWGSLMAACRVHGEIELAEFAAKQ--LLQLDPD 551
            P +P+ V W ++++ C  +G+ E A F   Q  L ++ PD
Sbjct: 1200 P-SPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPD 1238



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 164/386 (42%), Gaps = 46/386 (11%)

Query: 123  ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM--SY 180
            IL+    A  L  G + H      G   D FV   L+ MY  CG +  AR +FD    + 
Sbjct: 662  ILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTN 721

Query: 181  RDIVPWSVMIDGYFQNG-LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            RD+V W+ ++     +     +  +LF  ++ S V      L+ +   C  + + S  E+
Sbjct: 722  RDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASES 781

Query: 240  VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
            +H + +   +  D  +   L+ +YA  G +  A+ LFD + ++++V+   M+  Y     
Sbjct: 782  LHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCL 841

Query: 300  VEDARLIFDQMVE-------------------------------------------KDLI 316
              +A L+F +                                               D+I
Sbjct: 842  EYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVI 901

Query: 317  CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
             W+  +S + +     EA+  F +M    +  D +T + +++  A L  L+  ++IH  +
Sbjct: 902  VWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIV 961

Query: 377  DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
             ++     + V N +I+MY K GS+  AR VF +M   ++ISW +MI+   + G    ++
Sbjct: 962  MRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSV 1021

Query: 437  IFFNKMKDESIDPNGVTFIGVLYACS 462
              F  +  +S+ P+  T   VL ACS
Sbjct: 1022 GMFVHLLRDSLLPDQFTVASVLRACS 1047



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 149/336 (44%), Gaps = 24/336 (7%)

Query: 25   LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP-SSLYYALSIFSQIPAPPSR 83
            L   KQ HA ++K   +        L L +TS  L        +  A  +FS+IP+P   
Sbjct: 1154 LKQGKQIHAVVVKRGFN--------LDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDV 1205

Query: 84   VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
                 I     + + +HAL  + +M    +  D ++F  ++KA +    L +G Q+H   
Sbjct: 1206 AWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANI 1265

Query: 144  TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
             KL    DPFV T LV MY  CG I DAR +F + + R I  W+ MI G  Q+G   E L
Sbjct: 1266 VKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEAL 1325

Query: 204  NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI-IDNNVALDAHLQ--STLI 260
              F+ MK   V PD +    +LSACS +G +S  EA   F  +  N  ++  ++  S L+
Sbjct: 1326 QFFKYMKSRGVMPDRVTFIGVLSACSHSGLVS--EAYENFYSMQKNYGIEPEIEHYSCLV 1383

Query: 261  TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK------- 313
               +  G ++ A+ +   +  +    S +M      A +V+  R    ++ EK       
Sbjct: 1384 DALSRAGRIEEAEKVISSMPFE---ASASMYRTLLNACRVQVDRETGKRVAEKLLALEPS 1440

Query: 314  DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
            D   +  + + YA  N  +      N M+   +K D
Sbjct: 1441 DSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKD 1476


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/739 (34%), Positives = 404/739 (54%), Gaps = 59/739 (7%)

Query: 4   LSQPTKPLTLPTSTAISSCSSL------THMKQTHAQILKLSHSHHSQNSLLLKLLLTSF 57
           L +  +P +    + +++CS+L         KQ HA  L+        NS ++  L+  +
Sbjct: 191 LDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR----KGELNSFIINTLVAMY 246

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117
                  SS      +            N  + ++  + +   AL+   +M+ EG+  D 
Sbjct: 247 GKLGKLASSKV----LLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDE 302

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLG-FGSDPFVQTGLVGMYGACGKILDARLMFD 176
           F+   +L A +  E L  G ++H    K G    + FV + LV MY  C ++L  R +FD
Sbjct: 303 FTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFD 362

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACSRAGNLS 235
            M  R I  W+ MI GY QN    E L LF  M+ S  +  +   ++ ++ AC R+G  S
Sbjct: 363 GMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFS 422

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
             EA+H F++   +  D  +Q+TL         MDM                      YS
Sbjct: 423 RKEAIHGFVVKRGLDRDRFVQNTL---------MDM----------------------YS 451

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ-----------VC 344
           R G+++ A  IF +M ++DL+ W+ MI+GY  + H ++AL L ++MQ             
Sbjct: 452 RLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRV 511

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
            +KP+ +T+++++ +CA L  L + + IH Y  KN    D+ V +A++DMYAKCG L+ +
Sbjct: 512 SLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMS 571

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
           R+VF+++ ++NVI+W  +I A+ +HG+ + A+     M  + + PN VTFI V  ACSH+
Sbjct: 572 RKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHS 631

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV-IWG 523
           G+VDEG  IF  M  +Y + P  +HY C+VDL GRA  ++EA +L+  MP   N    W 
Sbjct: 632 GMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWS 691

Query: 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
           SL+ A R+H  +E+ E AA+ L+QL+P+     VLL+NIY+    W    E+R++MKE+G
Sbjct: 692 SLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQG 751

Query: 584 ILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLE 643
           + KE  CS IE  +EV++F+  D SH Q++++   L  +   ++  GYVPD    L ++E
Sbjct: 752 VRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVE 811

Query: 644 DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIR 703
           ++EK  ++  HSEKLA+ +G++++   + IR+ KNLRVC DCH   K +SK+  REI++R
Sbjct: 812 EDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILR 871

Query: 704 DRTRFHHYKDGVCSCKDYW 722
           D  RFH +K+G CSC DYW
Sbjct: 872 DVRRFHRFKNGTCSCGDYW 890



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 211/445 (47%), Gaps = 56/445 (12%)

Query: 33  AQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIF-SQIPAPPSRVSNKFIRA 91
           +Q+L  S   H     LL+   TS +      S++  A SIF SQ  +P   +    +R+
Sbjct: 19  SQLLPFSRHKHP---YLLRATPTSAT--EDVASAVSGAPSIFISQSRSPEWWID--LLRS 71

Query: 92  ISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSD 151
              S+  + A+  ++ M+  G+  D ++FP +LKA+A  + +  G Q+H    K G+G D
Sbjct: 72  KVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVD 131

Query: 152 PF-VQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
              V   LV +Y  CG       +FD++S R+ V W+ +I        ++  L  F  M 
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 191

Query: 211 MSNVEPDEMVLSKILSACSR---AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
             NVEP    L  +++ACS       L  G+ VH +                        
Sbjct: 192 DENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY------------------------ 227

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
              + KG  +  ++  LV   AM   Y + G++  ++++      +DL+ W+ ++S   +
Sbjct: 228 --GLRKGELNSFIINTLV---AM---YGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 279

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY------IDKNAF 381
           N    EAL+   EM + G++PD+ T+ SV+ AC+HL +L   + +H Y      +D+N+F
Sbjct: 280 NEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 339

Query: 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNK 441
                V +A++DMY  C  + S R VF+ M  R +  W +MI  ++ +   + AL+ F  
Sbjct: 340 -----VGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIG 394

Query: 442 MKDES-IDPNGVTFIGVLYACSHAG 465
           M++ + +  N  T  GV+ AC  +G
Sbjct: 395 MEESAGLLANSTTMAGVVPACVRSG 419



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/348 (19%), Positives = 154/348 (44%), Gaps = 39/348 (11%)

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W  ++    ++ L  E +  + +M +  ++PD      +L A +   ++  G+ +H  + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
                +D+                              + V+  +V+ Y + G       
Sbjct: 125 KFGYGVDS------------------------------VTVANTLVNLYRKCGDFGAVYK 154

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +FD++ E++ + W+++IS        + AL+ F  M    ++P   T++SV++AC++L +
Sbjct: 155 VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM 214

Query: 366 ---LDQAQRIHLYIDKNAFGGDLR--VNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
              L   +++H Y  +    G+L   + N ++ MY K G L S++ +      R++++W 
Sbjct: 215 PEGLMMGKQVHAYGLRK---GELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 271

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +++++   +     AL +  +M  E ++P+  T   VL ACSH  ++  G+E+ A     
Sbjct: 272 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 331

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
            ++         +VD++     +     + + M F   + +W +++A 
Sbjct: 332 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 127/245 (51%), Gaps = 19/245 (7%)

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W  ++     +N  +EA+  + +M V G+KPD     +++ A A L  ++  ++IH ++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 378 KNAFGGD-LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
           K  +G D + V N ++++Y KCG   +  +VF+R+  RN +SW S+I++         AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE---GREIFA-----SMTNEYNIPPKYE 488
             F  M DE+++P+  T + V+ ACS+  + +    G+++ A        N + I     
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII----- 239

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA-CRVHGEIELAEFAAKQLLQ 547
               +V ++G+   L  +  L+ +     ++V W +++++ C+    +E  E+  + +L+
Sbjct: 240 --NTLVAMYGKLGKLASSKVLLGSFG-GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLE 296

Query: 548 -LDPD 551
            ++PD
Sbjct: 297 GVEPD 301


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/658 (35%), Positives = 369/658 (56%), Gaps = 31/658 (4%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
            ++Y AL +F++I  P     +  I  +      + A ++F  M  +G   ++F+   ++
Sbjct: 100 GTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLV 159

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
                   L  G  +HG   K GF SD  V   L+ MY     + D   +F+ M+  D+V
Sbjct: 160 STATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLV 219

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ ++ G++ +        +F +M +   +P+      +L +CS   +  +G+ VH  I
Sbjct: 220 SWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHI 279

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           I N+   D                                 V TA+V  Y++A  +EDA 
Sbjct: 280 IKNSSDDDD-------------------------------FVGTALVDMYAKARCLEDAG 308

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
           + FD++V +D+  W+ +ISGYA+ +  ++A+K F +MQ  G+KP++ T+ S +S C+H+ 
Sbjct: 309 VAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMA 368

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L+  +++H    K    GD+ V +A++D+Y KCG +E A  +F+ +  R+++SW ++I+
Sbjct: 369 TLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIIS 428

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
            ++ HG    AL  F  M  E I P+  TFIGVL ACS  GLV+EG++ F SM+  Y I 
Sbjct: 429 GYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGIN 488

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P  EHY CMVD+ GRA    E    +E M   P  +IW +++ AC++HG ++  E AAK+
Sbjct: 489 PSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKK 548

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           L +++P  D + +LLSNI+A   RW DV  +R  M  RGI KE  CS +E++ +V+ FL+
Sbjct: 549 LFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLS 608

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            D SH +  +IY KL+++   L   GYVP     L ++ ++EK E + +HSE+LAL + L
Sbjct: 609 QDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFAL 668

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +S+     IRI KNLR+CEDCH+F+KL+S +  +EIV+RD  RFHH+K G CSC+D W
Sbjct: 669 LSTNAVKPIRIFKNLRICEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 138/499 (27%), Positives = 227/499 (45%), Gaps = 47/499 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F  +P       N  +   +     K  LK+F KM        +F+   +LK  A 
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L EG  +H L  + G   D F+   LV MY  CG + DA  +F K+   D+V WS M
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G  Q G   E   LF  M+     P++  LS ++S  +  G+L YG+++H  I     
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF 183

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             D  + + LI MY    C++    +F+ +   +LV   A++SG+  +        IF Q
Sbjct: 184 ESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQ 243

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M+ +                               G KP+  T +SV+ +C+ L   +  
Sbjct: 244 MLLE-------------------------------GFKPNMFTFISVLRSCSSLLDPEFG 272

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           +++H +I KN+   D  V  A++DMYAK   LE A   F+R+  R++ SWT +I+ +A  
Sbjct: 273 KQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQT 332

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
             A  A+ +F +M+ E I PN  T    L  CSH   ++ GR++ A       +  K  H
Sbjct: 333 DQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHA-------VAVKAGH 385

Query: 490 YG------CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
           +G       +VDL+G+   +  A  + + +  + ++V W ++++    HG+ E A  A +
Sbjct: 386 FGDIFVGSALVDLYGKCGCMEHAEAIFKGL-ISRDIVSWNTIISGYSQHGQGEKALEAFR 444

Query: 544 QLLQ--LDPDHDGALVLLS 560
            +L   + PD    + +LS
Sbjct: 445 MMLSEGIMPDEATFIGVLS 463



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 167/377 (44%), Gaps = 60/377 (15%)

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           +E A  +F  M EK+ + W+A+++GYA+    ++ LKLF +M+ C  K  K T+ +V+  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           CA+ G L + + +H    ++    D  +  +++DMY+KCG++  A +VF ++R  +V++W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG-------------- 465
           ++MI      G  + A   F+ M+ +   PN  T   ++   ++ G              
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 466 ---------------------LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
                                 V++G ++F +MTN     P    +  ++  F  +    
Sbjct: 181 YGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTN-----PDLVSWNALLSGFYDSQTCG 235

Query: 505 EALELVETM---PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL-VLLS 560
               +   M    F PN+  + S++ +C    + E  +     +++   D D  +   L 
Sbjct: 236 RGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALV 295

Query: 561 NIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLN 620
           ++YAK +  +D G               A  R+ +N +++ +      + QTDQ  EK  
Sbjct: 296 DMYAKARCLEDAG--------------VAFDRL-VNRDIFSWTVIISGYAQTDQA-EKAV 339

Query: 621 EVISELKPAGYVPDIHS 637
           +   +++  G  P+ ++
Sbjct: 340 KYFRQMQREGIKPNEYT 356


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/719 (35%), Positives = 386/719 (53%), Gaps = 45/719 (6%)

Query: 9   KPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT--T 63
           +P     S  +++C+   ++   +Q HA ++++ +          K + T+ +L      
Sbjct: 199 QPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYD---------KDVFTANALVDMYMK 249

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
              +  A  IF ++P       N  I     +     A+++ L+M   GL  + F+   I
Sbjct: 250 MGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSI 309

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           LKA + A     G Q+HG   K    SD ++  GLV MY     + DAR +FD M +RD+
Sbjct: 310 LKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDL 369

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           +  + +I G    G  DE L+LF E++   +  +   L+ +L + +     S    VH  
Sbjct: 370 ILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHAL 429

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
            +      DAH+ + LI  Y  C C+                                DA
Sbjct: 430 AVKIGFIFDAHVVNGLIDSYWKCSCL-------------------------------SDA 458

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
             +F++    D+I  ++MI+  ++ +H + A+KLF EM   G++PD   + S+++ACA L
Sbjct: 459 NRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASL 518

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
              +Q +++H ++ K  F  D    NA++  YAKCGS+E A   F  +  R V+SW++MI
Sbjct: 519 SAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMI 578

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
              A HG  + AL  F +M DE I+PN +T   VL AC+HAGLVDE +  F SM   + I
Sbjct: 579 GGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGI 638

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
               EHY CM+DL GRA  L +A+ELV +MPF  N  IWG+L+ A RVH + EL + AA+
Sbjct: 639 DRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAE 698

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
           +L  L+P+  G  VLL+N YA    W +V ++RK MK+  I KE A S IE+ ++V+ F+
Sbjct: 699 KLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFI 758

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYG 663
             D+SH  T +IY KL E+   +  AG+VP++   L DL+  EK  ++  HSE+LA+ + 
Sbjct: 759 VGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFA 818

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           L+S+   + IR+ KNLR+C DCH   K +SK+ +REI+IRD  RFHH++DG CSC DYW
Sbjct: 819 LLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/538 (26%), Positives = 245/538 (45%), Gaps = 48/538 (8%)

Query: 17  TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
           T  ++  +L      HA +LK       +N L+      SF      P     A  +F +
Sbjct: 12  TRYAAAQALLPGAHLHASLLKSGSLASFRNHLI------SFYSKCRRPCC---ARRVFDE 62

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
           IP P     +  + A S +  P+ A++ F  M  EG+  + F+ P +LK +  A     G
Sbjct: 63  IPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAR---LG 119

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM-SYRDIVPWSVMIDGYFQ 195
            QVH +    GFGSD FV   LV MYG  G + DAR +F++  S R+ V W+ ++  Y +
Sbjct: 120 AQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVK 179

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           N    + + +F EM  S ++P E   S +++AC+ + N+  G  VH  ++      D   
Sbjct: 180 NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFT 239

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            + L+ MY   G +D+A  +F+K                               M + D+
Sbjct: 240 ANALVDMYMKMGRVDIASVIFEK-------------------------------MPDSDV 268

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + W+A+ISG   N H   A++L  +M+  G+ P+  T+ S++ AC+  G  D  ++IH +
Sbjct: 269 VSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGF 328

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
           + K     D  +   ++DMYAK   L+ AR+VF+ M  R++I   ++I+  +  G    A
Sbjct: 329 MIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEA 388

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
           L  F +++ E +  N  T   VL + +        R++ A       I   +   G ++D
Sbjct: 389 LSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNG-LID 447

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRV--HGEIELAEFAAKQLLQLDPD 551
            + + + L +A  + E    + +++   S++ A     HGE  +  F       L+PD
Sbjct: 448 SYWKCSCLSDANRVFEECS-SGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPD 504



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/486 (25%), Positives = 223/486 (45%), Gaps = 36/486 (7%)

Query: 70  ALSIFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           A  +F++  +  + VS N  + A   + +   A++VF +M+  G+    F F  ++ A  
Sbjct: 154 ARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACT 213

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
            +  +  G QVH +  ++G+  D F    LV MY   G++  A ++F+KM   D+V W+ 
Sbjct: 214 GSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNA 273

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I G   NG     + L  +MK S + P+   LS IL ACS AG    G  +H F+I  N
Sbjct: 274 LISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKAN 333

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D ++   L+ MYA    +D A+ +FD +  ++L++  A++SG S  G+ +       
Sbjct: 334 ADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHD------- 386

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
                                   EAL LF E++  G+  ++ T+ +V+ + A L     
Sbjct: 387 ------------------------EALSLFYELRKEGLGVNRTTLAAVLKSTASLEAAST 422

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            +++H    K  F  D  V N +ID Y KC  L  A  VFE     ++I+ TSMI A + 
Sbjct: 423 TRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQ 482

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
                 A+  F +M  + ++P+      +L AC+     ++G+++ A +     +   + 
Sbjct: 483 CDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFA 542

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA--ACRVHGEIELAEFAAKQLL 546
               +V  + +   + +A     ++P    VV W +++   A   HG+  L  F      
Sbjct: 543 G-NALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFGRMVDE 600

Query: 547 QLDPDH 552
            ++P+H
Sbjct: 601 GINPNH 606


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/717 (36%), Positives = 391/717 (54%), Gaps = 41/717 (5%)

Query: 9    KPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
            KP  +  ++ +S+CSS+  +   KQ H+  +K   S    + ++L+  L    +     S
Sbjct: 369  KPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMS----SDIILEGALLDLYVKC---S 421

Query: 66   SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
             +  A   F         + N  + A         + K+F +M  EG+  ++F++P IL+
Sbjct: 422  DIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILR 481

Query: 126  AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
              +    +  G Q+H    K GF  + +V + L+ MY   GK+  A  +F ++  +D+V 
Sbjct: 482  TCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVS 541

Query: 186  WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
            W+ MI GY Q+  F E LNLF+EM+   +  D +  +  +SAC+    L+ G+ +H    
Sbjct: 542  WTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHA--- 598

Query: 246  DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
                          ++ Y++                 +L V  A+VS Y+R G+V DA  
Sbjct: 599  -----------QACVSGYSD-----------------DLSVGNALVSLYARCGKVRDAYF 630

Query: 306  IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
             FD++  KD I W+++ISG+A++ H +EAL LF++M   G + +  T    +SA A++  
Sbjct: 631  AFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVAN 690

Query: 366  LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
            +   ++IH  I K     +  V+N +I +YAKCG+++ A   F  M  +N ISW +M+  
Sbjct: 691  VKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTG 750

Query: 426  FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
            ++ HG    AL  F  MK   + PN VTF+GVL ACSH GLVDEG + F SM   + + P
Sbjct: 751  YSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVP 810

Query: 486  KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
            K EHY C+VDL GR+ LL  A   VE MP  P+ ++  +L++AC VH  I++ EFAA  L
Sbjct: 811  KPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHL 870

Query: 546  LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
            L+L+P      VLLSN+YA   +W      R+ MK+RG+ KE   S IE+NN V+ F   
Sbjct: 871  LELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAG 930

Query: 606  DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
            D+ H   D+IYE L ++       GY+P  +S L D E  +K    + HSEKLA+ +GL+
Sbjct: 931  DQKHPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLL 990

Query: 666  SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            S    + I + KNLRVC DCHN+IK VSK+  R IV+RD  RFHH+K G+CSCKDYW
Sbjct: 991  SLSSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 222/467 (47%), Gaps = 40/467 (8%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A+++F ++P  P    NK +            L +F +ML E +  D  ++  +L+    
Sbjct: 122 AVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGG 181

Query: 130 AEGLLEGMQ-VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
            +     ++ +H      G+ +  FV   L+ +Y   G +  A+ +FD +  RD V W  
Sbjct: 182 GDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVA 241

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           M+ G  Q+G  +E + LF +M  S V P   + S +LSAC++      GE +H  ++   
Sbjct: 242 MLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQG 301

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
            +L+ ++ + L+T+Y                               SR G    A  +F+
Sbjct: 302 FSLETYVCNALVTLY-------------------------------SRLGNFIPAEQVFN 330

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
            M+++D + ++++ISG ++  +  +AL+LF +M +  +KPD VT+ S++SAC+ +G L  
Sbjct: 331 AMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLV 390

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            ++ H Y  K     D+ +  A++D+Y KC  +++A E F      NV+ W  M+ A+ +
Sbjct: 391 GKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGL 450

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN---EYNIPP 485
             +   +   F +M+ E I+PN  T+  +L  CS    VD G +I   +     ++N+  
Sbjct: 451 LDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYV 510

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
                  ++D++ +   L  AL++   +    +VV W +++A    H
Sbjct: 511 S----SVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIAGYAQH 552



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 150/552 (27%), Positives = 244/552 (44%), Gaps = 53/552 (9%)

Query: 10  PLTLPTSTAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSFS-LPTTTPS 65
           P     S+ +S+C+ +   K   Q H  +LK      S  + +   L+T +S L    P 
Sbjct: 269 PTPYIFSSVLSACTKVEFYKVGEQLHGLVLK---QGFSLETYVCNALVTLYSRLGNFIP- 324

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
               A  +F+ +        N  I  +S       AL++F KM  + L  D  +   +L 
Sbjct: 325 ----AEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLS 380

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A +    LL G Q H    K G  SD  ++  L+ +Y  C  I  A   F      ++V 
Sbjct: 381 ACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVL 440

Query: 186 WSVMIDGYFQNGLFD---EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           W+VM+  Y   GL D   E   +F +M+M  +EP++     IL  CS    +  GE +H 
Sbjct: 441 WNVMLVAY---GLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHT 497

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
            ++      + ++ S LI MYA  G +D A  +F ++  K++V  TAM++GY        
Sbjct: 498 QVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGY-------- 549

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
                                  A++    EAL LF EMQ  G+  D +   S ISACA 
Sbjct: 550 -----------------------AQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAG 586

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           +  L+Q Q+IH     + +  DL V NA++ +YA+CG +  A   F+++  ++ ISW S+
Sbjct: 587 IQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSL 646

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I+ FA  G    AL  F++M     + N  TF   + A ++   V  G++I A M  +  
Sbjct: 647 ISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHA-MIIKTG 705

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE--IELAEF 540
              + E    ++ L+ +   + +A      MP   N + W +++     HG     L+ F
Sbjct: 706 HDSETEVSNVLITLYAKCGNIDDAERQFFEMP-EKNEISWNAMLTGYSQHGHGFKALSLF 764

Query: 541 AAKQLLQLDPDH 552
              + L + P+H
Sbjct: 765 EDMKQLGVLPNH 776



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 198/427 (46%), Gaps = 37/427 (8%)

Query: 105 FLKMLNE-GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYG 163
           FL ++ E G+  +  ++  +L     +    +G ++HG   K+GF ++  +   L+ +Y 
Sbjct: 55  FLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYI 114

Query: 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSK 223
           A G +  A  +FD+M  R +  W+ ++  +    +   VL LF  M    V+PDE   + 
Sbjct: 115 AFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAG 174

Query: 224 ILSACSRAGNLSYG--EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           +L  C   G++ +   E +H   I +       + + LI +Y   G ++ AK +FD +  
Sbjct: 175 VLRGCG-GGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQK 233

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           ++ V   AM+SG S++G  E+A L+F Q                               M
Sbjct: 234 RDSVSWVAMLSGLSQSGCEEEAVLLFCQ-------------------------------M 262

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
              G+ P      SV+SAC  +      +++H  + K  F  +  V NA++ +Y++ G+ 
Sbjct: 263 HTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNF 322

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
             A +VF  M +R+ +S+ S+I+  +  G +  AL  F KM  + + P+ VT   +L AC
Sbjct: 323 IPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSAC 382

Query: 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI 521
           S  G +  G++ F S   +  +       G ++DL+ + + ++ A E   +     NVV+
Sbjct: 383 SSVGALLVGKQ-FHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTE-TENVVL 440

Query: 522 WGSLMAA 528
           W  ++ A
Sbjct: 441 WNVMLVA 447



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 4/157 (2%)

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
             F + +E +    +A+   Y+ +      +   + M+  G++ +  T L ++  C   G
Sbjct: 27  FFFQKFLEHN----TALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSG 82

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
                 ++H  I K  F  ++ +   ++D+Y   G L+ A  VF+ M  R +  W  +++
Sbjct: 83  WFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLH 142

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
            F     A   L  F +M  E + P+  T+ GVL  C
Sbjct: 143 RFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGC 179


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/549 (40%), Positives = 337/549 (61%), Gaps = 24/549 (4%)

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA----GNLSYGEAVHEFI 244
           +I  +  +G     L L+  +  + + P    L  +L + + +    G      AVH   
Sbjct: 59  LIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAVHAHA 118

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA----------MVSGY 294
           +   +A    + + LI ++A         GL  ++   +L++ T+          +++ +
Sbjct: 119 VRLGLAGFLLVNNALIRVHA---------GLLGRLADAHLLLRTSAAVDASTFNTLITAH 169

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
           +RAG+V DAR +FD+M E++ + WSAM++GY +    +EAL +F++MQ  G++PD   ++
Sbjct: 170 ARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLV 229

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
            V++ACA LG L+Q + +H Y+  N     + +  A++DMYAKCG ++   EVFE M+ +
Sbjct: 230 GVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDK 289

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           NV++WT+MI   A+HG   ++L  F++M+   + P+ + FIG L AC+H GLVD+GRE+F
Sbjct: 290 NVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELF 349

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
            SM N Y I PK EHYGCMVDL  R  LL EA ++VE MP  P+ +IWG+LMA CR H  
Sbjct: 350 NSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKN 409

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
           +ELAE+  K  ++L+PD  GA VLL NIY+   R     E+R  M+E+G+ K   CS +E
Sbjct: 410 VELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVE 469

Query: 595 MNNEVYEFLTADRSHKQTDQIYEKLNEVISELK-PAGYVPDIHSALVDLEDEEKREVILW 653
           +   +++F+  D SH +   I  K  E+ S ++   GYVPD    L+D+E+EE    +  
Sbjct: 470 IKGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEMESALSR 529

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HSEKLA+ + LIS++    IRIVKNLRVC+DCH+  KL+SKVY REI++RDRTRFH +KD
Sbjct: 530 HSEKLAIAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKD 589

Query: 714 GVCSCKDYW 722
           G CSCKDYW
Sbjct: 590 GTCSCKDYW 598



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 195/432 (45%), Gaps = 74/432 (17%)

Query: 82  SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG----M 137
           + + +  IRA + S RP+ AL ++  ++  GL     + P +LK++A +  +       +
Sbjct: 53  AELHDALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLAL 112

Query: 138 QVHGLGTKLGFGSDPFVQTGLV----GMYGA----------------------------C 165
            VH    +LG      V   L+    G+ G                              
Sbjct: 113 AVHAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARA 172

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           G++ DAR +FD+M  R+ V WS M++GY Q G   E L +F +M+   V PD+ VL  +L
Sbjct: 173 GRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVL 232

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
           +AC++ G L  G+ VH ++  NN+ +   L + L+ MYA CG + +   +F+ +  KN++
Sbjct: 233 AACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVL 292

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
             T M+ G +  G+  D                               +L LF++M+  G
Sbjct: 293 AWTTMIKGLAMHGRGSD-------------------------------SLTLFSQMESSG 321

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLES 403
           +KPD +  +  + AC H G++D+ + +   +  N +G   ++ +   ++D+ A+ G L  
Sbjct: 322 VKPDDIAFIGALCACTHTGLVDKGRELFNSMVNN-YGIKPKIEHYGCMVDLLARNGLLSE 380

Query: 404 AREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYAC 461
           AR++ E+M  + + + W +++     H +   A        +   D +G    +G +Y+ 
Sbjct: 381 ARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSA 440

Query: 462 SHAGLVDEGREI 473
           S  G     REI
Sbjct: 441 S--GRHASAREI 450



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 116/246 (47%), Gaps = 4/246 (1%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A S+F ++P   +   +  +     +   + AL VF +M  +G+  D      +L A A+
Sbjct: 178 ARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQ 237

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L +G  VHG           F+ T LV MY  CG++     +F+ M  ++++ W+ M
Sbjct: 238 LGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTM 297

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G   +G   + L LF +M+ S V+PD++     L AC+  G +  G  +   ++ NN 
Sbjct: 298 IKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMV-NNY 356

Query: 250 ALDAHLQ--STLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLI 306
            +   ++    ++ + A  G +  A+ + +K+ +K + ++  A+++G      VE A  +
Sbjct: 357 GIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYV 416

Query: 307 FDQMVE 312
               +E
Sbjct: 417 IKHWIE 422


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/650 (37%), Positives = 376/650 (57%), Gaps = 6/650 (0%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           MST+++          + +  C +    KQ H+Q +    +    N    K L   +   
Sbjct: 23  MSTITESISNDYSRFISILGVCKTTDQFKQLHSQSITRGVA---PNPTFQKKLFVFWC-- 77

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
           +     + YA  +F +IP P   V N  I+  S        ++++L ML EG+T D  +F
Sbjct: 78  SRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTF 137

Query: 121 PPILKAIARAEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           P +L  + R  G L  G ++H    K G GS+ +VQ  LV MY  CG +  AR +FD+  
Sbjct: 138 PFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRC 197

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
             D+  W++MI GY +   ++E + L  EM+ + V P  + L  +LSACS+  +    + 
Sbjct: 198 KEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKR 257

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           VHE++ +        L++ L+  YA CG MD+A  +F  +  ++++  T++V GY   G 
Sbjct: 258 VHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGN 317

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           ++ AR  FDQM  +D I W+ MI GY       E+L++F EMQ  GM PD+ TM+SV++A
Sbjct: 318 LKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTA 377

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           CAHLG L+  + I  YIDKN    D+ V NA+IDMY KCG  E A++VF  M +R+  +W
Sbjct: 378 CAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTW 437

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           T+M+   A +G  + A+  F +M+D SI P+ +T++GVL AC+H+G+VD+ R+ FA M +
Sbjct: 438 TAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRS 497

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
           ++ I P   HYGCMVD+ GRA L++EA E++  MP  PN ++WG+L+ A R+H +  +AE
Sbjct: 498 DHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAE 557

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
            AAK++L+L+PD+     LL NIYA  KRW+D+ E+R+ + +  I K    S IE+N   
Sbjct: 558 LAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFA 617

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
           +EF+  D+SH Q+++IY KL E+  E   A Y+PD    L +  ++E  E
Sbjct: 618 HEFVAGDKSHLQSEEIYMKLEELAQESTFAAYLPDTSELLFEAGNKELEE 667


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/700 (35%), Positives = 384/700 (54%), Gaps = 67/700 (9%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPI 123
            SL  A  +F ++P       N  I + +   +PK AL++F KM NE G   D  +   +
Sbjct: 176 GSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNV 235

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L   A       G Q HG         + FV   LV MY   G + +A  +F  M  +D+
Sbjct: 236 LPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDV 295

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMK--------------------------------- 210
           V W+ M+ GY Q G F++ + LFE+M+                                 
Sbjct: 296 VSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQ 355

Query: 211 --MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
              S ++P+E+ L  +LS C+  G L +G+ +H + I                       
Sbjct: 356 MLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYP-------------------- 395

Query: 269 MDMAK-GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV--EKDLICWSAMISGY 325
           MD+ K G  D+    N+V++  ++  Y++  +V+ AR +FD +   E+D++ W+ MI GY
Sbjct: 396 MDLRKNGHGDE----NMVINQ-LIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGY 450

Query: 326 AENNHPQEALKLFNEM--QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           +++    +AL+L +EM  + C  +P+  T+   + ACA L  L   ++IH Y  +N    
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNA 510

Query: 384 -DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
             L V+N +IDMYAKCG +  AR VF+ M  +N ++WTS++  + +HG    AL  F +M
Sbjct: 511 VPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEM 570

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
           +      +GVT + VLYACSH+G++D+G E F  M  ++ + P  EHY C+VDL GRA  
Sbjct: 571 RRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGR 630

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
           L  AL L+E MP  P  V+W +L++ CR+HG++EL E+AAK++ +L  ++DG+  LLSN+
Sbjct: 631 LNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNM 690

Query: 563 YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
           YA   RW+DV  +R  M+ +GI K   CS +E       F   D++H    +IY+ L++ 
Sbjct: 691 YANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDH 750

Query: 623 ISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVC 682
           +  +K  GYVP+   AL D++DEEK +++  HSEKLAL YG++++ + + IRI KNLRVC
Sbjct: 751 MQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVC 810

Query: 683 EDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            DCH     +S++   EI++RD +RFHH+K+G+CSCK YW
Sbjct: 811 GDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 183/570 (32%), Positives = 293/570 (51%), Gaps = 32/570 (5%)

Query: 15  TSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT-TTPSSLYYALSI 73
           T   I  C +++ +K  H ++L            +L L LTS  + T  +   L +A+S+
Sbjct: 31  TPPFIHKCKTISQVKLIHQKLLSFG---------ILTLNLTSHLISTYISLGCLSHAVSL 81

Query: 74  FSQIPAPPSRVS--NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
             + P   + V   N  IR+   + R    L  F  M +   T D ++FP + KA     
Sbjct: 82  LRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEIS 141

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
            +  G   H L    GF S+ FV   LV MY  CG + DAR +FD+M   D+V W+ +I+
Sbjct: 142 SVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIE 201

Query: 192 GYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
            Y + G     L +F +M       PD++ L  +L  C+  G  S G+  H F + + + 
Sbjct: 202 SYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMI 261

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
            +  + + L+ MYA  G MD A  +F  + +K++V   AMV+GYS+ G+ EDA  +F+QM
Sbjct: 262 QNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQM 321

Query: 311 VEK----DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
            E+    D++ WSA ISGYA+     EAL +  +M   G+KP++VT++SV+S CA +G L
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381

Query: 367 DQAQRIHLY-------IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM--RRRNVI 417
              + IH Y       + KN  G +  V N +IDMYAKC  ++ AR +F+ +  + R+V+
Sbjct: 382 MHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVV 441

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESID--PNGVTFIGVLYACSHAGLVDEGREIFA 475
           +WT MI  ++ HGDA  AL   ++M +E     PN  T    L AC+    +  G++I A
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHA 501

Query: 476 -SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
            ++ N+ N  P +    C++D++ +   + +A  + + M    N V W SLM    +HG 
Sbjct: 502 YALRNQQNAVPLFVS-NCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTGYGMHGY 559

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
            E A    +++ ++    DG + LL  +YA
Sbjct: 560 GEEALGIFEEMRRIGFKLDG-VTLLVVLYA 588



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 140/313 (44%), Gaps = 20/313 (6%)

Query: 4   LSQPTKPLTLPTSTAISSCSS---LTHMKQTHAQILK----LSHSHHSQNSLLLKLLLTS 56
           LS   KP  +   + +S C+S   L H K+ H   +K    L  + H   ++++  L+  
Sbjct: 357 LSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDM 416

Query: 57  FSLPTTTPSSLYYALSIFSQIPAPPSR---VSNKFIRAISWSHRPKHALKVFLKMLNEGL 113
           ++        +  A ++F  + +P  R        I   S       AL++  +M  E  
Sbjct: 417 YA----KCKKVDIARAMFDSL-SPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDC 471

Query: 114 TI--DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDP-FVQTGLVGMYGACGKILD 170
               + F+    L A A    L  G Q+H    +    + P FV   L+ MY  CG I D
Sbjct: 472 QTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGD 531

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           ARL+FD M  ++ V W+ ++ GY  +G  +E L +FEEM+    + D + L  +L ACS 
Sbjct: 532 ARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSH 591

Query: 231 AGNLSYG-EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVST 288
           +G +  G E  +    D  V+      + L+ +    G ++ A  L +++ ++   VV  
Sbjct: 592 SGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWV 651

Query: 289 AMVSGYSRAGQVE 301
           A++S     G+VE
Sbjct: 652 ALLSCCRIHGKVE 664


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/713 (35%), Positives = 387/713 (54%), Gaps = 47/713 (6%)

Query: 55  TSFSLPTTTPSSLYYALSIFSQIPAPPSR----VSNKFIRAISWSHRPKHALKVFLKMLN 110
           TS          L  A+S F  +P  P+R    + N  I A + +     A+ VF  +L 
Sbjct: 92  TSLVAAYAAADRLPAAVSFFDAVP--PARRDTVLHNAVISAYARASHAAPAVAVFRSLLA 149

Query: 111 EG-LTIDRFSFPPILKAIARAEGL--LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACG- 166
            G L  D +SF  +L A      +      Q+H    K G G    V   LV +Y  C  
Sbjct: 150 SGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCES 209

Query: 167 --------KILD-------------------------ARLMFDKMSYRDIVPWSVMIDGY 193
                   K+LD                         AR +F+++  +  V W+ MI GY
Sbjct: 210 PEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGY 269

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII--DNNVAL 251
             +G+  E   LF  M +  V  DE   + +LSAC+  G  ++G++VH  II    N   
Sbjct: 270 VHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVP 329

Query: 252 DAHL--QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
           +A L   + L+T Y+ CG + +A+ +FD + LK++V    ++SGY  +  ++ A  +F++
Sbjct: 330 EAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEE 389

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M  K+ + W  M+SGY      ++ALKLFN+M+   +KP   T    I+AC  LG L   
Sbjct: 390 MPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHG 449

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           +++H +I +  F G     NA+I MYA+CG+++ A  +F  M   + +SW +MI+A   H
Sbjct: 450 KQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQH 509

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G  R AL  F++M  E I P+ ++F+ VL AC+H+GLVDEG   F SM  ++ I P  +H
Sbjct: 510 GHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDH 569

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           Y  ++DL GRA  + EA +L++TMPF P   IW ++++ CR  G++EL   AA QL ++ 
Sbjct: 570 YTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMT 629

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P HDG  +LLSN Y+    W D   +RK M++RG+ KE  CS IE  N+V+ FL  D  H
Sbjct: 630 PQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKH 689

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
            +  ++Y+ L  V ++++  GYVPD    L D+E  +K  ++  HSE+LA+ +GL++   
Sbjct: 690 PEAHEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPP 749

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + + ++KNLR+C+DCH  I  +SK   REIV+RD  RFHH+KDG CSC +YW
Sbjct: 750 GATVTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 196/426 (46%), Gaps = 45/426 (10%)

Query: 152 PFVQTGLVGMYGACGKILDARLMFDKM--SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
           P   T LV  Y A  ++  A   FD +  + RD V  + +I  Y +       + +F  +
Sbjct: 88  PVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSL 147

Query: 210 KMS-NVEPDEMVLSKILSACSRAGNLS--YGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
             S ++ PD+   + +LSA     N+S  +   +H  ++ +       + + L+ +Y  C
Sbjct: 148 LASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKC 207

Query: 267 GCMDM---AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
              +    A+ + D++  K+ +  T MV GY R G V  AR +F+++  K  + W+AMIS
Sbjct: 208 ESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMIS 267

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH---LYIDKNA 380
           GY  +    EA +LF  M +  +  D+ T  SV+SACA++G+    + +H   + +  N 
Sbjct: 268 GYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNF 327

Query: 381 FG-GDLRVNNAIIDMYAKCGSLESAR-------------------------------EVF 408
                L VNNA++  Y+KCG++  AR                               EVF
Sbjct: 328 VPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVF 387

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
           E M  +N +SW  M++ +   G A +AL  FNKM+ E++ P   T+ G + AC   G + 
Sbjct: 388 EEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALK 447

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
            G+++   +  +            ++ ++ R   ++EA  +   MP   + V W ++++A
Sbjct: 448 HGKQLHGHIV-QLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNI-DSVSWNAMISA 505

Query: 529 CRVHGE 534
              HG 
Sbjct: 506 LGQHGH 511


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/614 (38%), Positives = 373/614 (60%), Gaps = 16/614 (2%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK--ILDARLMFDKMSY 180
           +   I+R +      Q+H    K G    P     L+       +  I  AR  F ++ +
Sbjct: 18  LFPQISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHH 77

Query: 181 RDIVPWSVMIDG---------YFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILSACSR 230
            +   W+ +I           +  N L  E L  F  M     VEP++     +L AC++
Sbjct: 78  PNCFSWNTIIRALADSDDDDLFHVNSL--EALLYFSHMLTDGLVEPNKFTFPCVLKACAK 135

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTA 289
              +  G+ +H F++   +  D  ++S L+ +Y  CG M  A  LF +  L+ N+V+   
Sbjct: 136 LARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNV 195

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
           M+ GY R G +  +R +FD M  K ++ W+ MISG A+N H +EA+++F++MQ+  + P+
Sbjct: 196 MIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPN 255

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
            VT++SV+ A + LG ++  + +HL+ +KN    D  + +A+IDMY+KCGS++ A +VFE
Sbjct: 256 YVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFE 315

Query: 410 RMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
            +R ++N I+W+++I   A+HG AR+AL  F +M+   + P+ V +IGVL ACSHAGLV+
Sbjct: 316 GIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVE 375

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           EGR I+  M N   + P+ EHYGCMVDL GRA  L EA +L+  MP  P+ VI  +L+ A
Sbjct: 376 EGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGA 435

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           C++HG IE+ E  AK L+   P   G+ V LSN++A +  W+ V ++R  MKE  I K+ 
Sbjct: 436 CKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDP 495

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
            CS IE++  ++EFL  D SH + + I+  L E+   L+  GY P+    L++++++EK+
Sbjct: 496 GCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQ 555

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
             + +HSEK+A+ +GLIS++  + ++IVKNLRVCEDCH+ IKLVSK+Y R+I++RDR RF
Sbjct: 556 SALHYHSEKIAIAFGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRF 615

Query: 709 HHYKDGVCSCKDYW 722
           HH+++G CSC DYW
Sbjct: 616 HHFENGSCSCMDYW 629



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 139/457 (30%), Positives = 214/457 (46%), Gaps = 81/457 (17%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSL-LLKLLLTSFSLPTTTPSSLYYALSIFSQI 77
           IS C +  H+KQ HA  +K    HH   +  LLK L  S      T   + YA   FSQI
Sbjct: 22  ISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLS------TQREIKYARKFFSQI 75

Query: 78  PAPPSRVSNKFIRAIS-------WSHRPKHALKVFLKMLNEGLT-IDRFSFPPILKAIAR 129
             P     N  IRA++       +      AL  F  ML +GL   ++F+FP +LKA A+
Sbjct: 76  HHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAK 135

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA------------------ 171
              + EG Q+HG   KLG  SD FV++ LV +Y  CG + DA                  
Sbjct: 136 LARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNV 195

Query: 172 --------------RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
                         R +FD M  + +V W+VMI G  QNG F E + +F +M++ +V P+
Sbjct: 196 MIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPN 255

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
            + L  +L A SR G +  G+ VH F   N + +D  L S LI MY+ CG +D A  +F+
Sbjct: 256 YVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFE 315

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
            +  K                              K+ I WSA+I G A +   ++AL  
Sbjct: 316 GIRNK------------------------------KNPITWSAIIGGLAMHGRARDALDH 345

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMY 395
           F  MQ  G+ P  V  + V+SAC+H G++++ + I+ ++  N  G   R+ +   ++D+ 
Sbjct: 346 FWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHM-VNIVGLLPRIEHYGCMVDLL 404

Query: 396 AKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD 431
            + G LE A ++   M  + + +   +++ A  +HG+
Sbjct: 405 GRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGN 441


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/746 (34%), Positives = 397/746 (53%), Gaps = 96/746 (12%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           MS+     + L    +T + +C    H+KQ HAQI+K + +                   
Sbjct: 1   MSSSQNVMRSLLRNPNTVVPTC----HVKQLHAQIVKTTKA------------------- 37

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
             TP SL +   I           S+  +R         H+L  F  + + G++ DR  F
Sbjct: 38  --TPHSLAWICII-------KCYASHGLLR---------HSLASFNLLRSFGISPDRHLF 79

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA---------------- 164
           P +L+A    +       +H    +LGF  D +    L+ MY                  
Sbjct: 80  PSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARH 139

Query: 165 ------CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
                   KI   R +FD+M  RD+V W+ +I G  QNG+++E LN+ +EM   N+ PD 
Sbjct: 140 NHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDS 199

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
             LS IL   +   N++ G+ +H + I +    D  + S+LI MYA C            
Sbjct: 200 FTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCT----------- 248

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
                               QVE +   F  +  +D I W+++I+G  +N    + L  F
Sbjct: 249 --------------------QVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFF 288

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
             M    +KP +V+  SVI ACAHL  L+  +++H YI +  F  +  + ++++DMYAKC
Sbjct: 289 RRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKC 348

Query: 399 GSLESAREVFER--MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           G+++ AR +F +  M  R+++SWT++I   A+HG A +A+  F +M  + + P  V F+ 
Sbjct: 349 GNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMA 408

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           VL ACSHAGLVDEG + F SM  ++ + P  EHY  + DL GRA  L EA + +  M   
Sbjct: 409 VLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEE 468

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
           P   +W +L+AACR H  IELAE    ++L +DP + GA V++SNIY+  +RW+D  +LR
Sbjct: 469 PTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLR 528

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
             M++ G+ K  ACS IE+ N+V+ FL  D+SH   D+I E LN ++ +++  GYV D +
Sbjct: 529 VRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTN 588

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
             L D+++E KR+++  HSE+LA+ +G+IS+   + IR++KN+RVC DCH  IK ++K+ 
Sbjct: 589 EVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFMAKIV 648

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
            REI++RD +RFHH+K+G CSC DYW
Sbjct: 649 GREIIVRDNSRFHHFKNGSCSCGDYW 674


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/568 (41%), Positives = 351/568 (61%), Gaps = 37/568 (6%)

Query: 156 TGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
           T +V  Y     +  AR  FD M  R +V W+ M+ GY QNGL +E L LF+EM  + +E
Sbjct: 198 TAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIE 257

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           PDE     ++SACS  G+                                C    + + L
Sbjct: 258 PDETTWVTVISACSSRGD-------------------------------PCLAASLVRTL 286

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
             K +  N  V TA++  Y++ G ++ AR +F+ M  ++++ W++MI+GYA+N     A+
Sbjct: 287 HQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAI 346

Query: 336 KLFNEMQVCG-MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
           +LF EM     + PD+VTM+SVISAC HLG L+    +  ++ +N     +  +NA+I M
Sbjct: 347 ELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFM 406

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y++CGS+E A+ VF+ M  R+V+S+ ++I+ FA HG    A+   + MK+  I+P+ VTF
Sbjct: 407 YSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTF 466

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           IGVL ACSHAGL++EGR++F S+ +     P  +HY CMVDL GR   L +A   +E MP
Sbjct: 467 IGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMP 521

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
             P+  ++GSL+ A R+H ++EL E AA +L +L+PD+ G  +LLSNIYA   RW+DV  
Sbjct: 522 MEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVER 581

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           +R++MK+ G+ K    S +E   ++++F+ ADRSH+++D IY+ L E+  +++ AGY+ D
Sbjct: 582 IREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIAD 641

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
               L D+E+EEK E++  HSEKLA+CY L+ S+  + IR+VKNLRVC DCH  IK++SK
Sbjct: 642 KSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISK 701

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +  R I++RD  RFH + DG+CSCKDYW
Sbjct: 702 LEGRVIIVRDNNRFHCFNDGLCSCKDYW 729


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 265/778 (34%), Positives = 412/778 (52%), Gaps = 68/778 (8%)

Query: 13  LPTSTAISSCSSLTHMKQTHAQILKLSHSH---HSQNSL-LLKLLLTSFSLPTTT----- 63
           L  S +++S S L  ++  HA++L  +  H   H   +L L+ L   S  LP        
Sbjct: 25  LAASRSLTSSSFLRALRCLHARLLTSALLHAPPHPHLTLRLIHLYTLSGDLPAAATLFRA 84

Query: 64  ------PSSLYYALSIFSQIPA--------PPSR----VSNKFIRAISWSHRPKHALKVF 105
                  +SL  A +   ++PA        P +R    + N  I A + +     A+ VF
Sbjct: 85  DPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVF 144

Query: 106 LKMLNEG-LTIDRFSFPPILKAIARAEGL--LEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162
             +L  G L  D +SF  +L A      +      Q+     K G G    V   LV +Y
Sbjct: 145 RSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALY 204

Query: 163 GAC---------GKILD-------------------------ARLMFDKMSYRDIVPWSV 188
             C          K+LD                         AR +F+++  +  V W+ 
Sbjct: 205 MKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNA 264

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI--ID 246
           MI GY  +G+  E   LF  M +  V  DE   + +LSAC+ AG  ++G++VH  I  + 
Sbjct: 265 MISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQ 324

Query: 247 NNVALDAHL--QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
            N   +A L   + L+T+Y+ CG + +A+ +FD +  K++V    ++SGY  +  ++ A 
Sbjct: 325 PNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAV 384

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            +F++M  K+ + W  M+SGY      ++ALKLFN M+   +KP   T    ISAC  LG
Sbjct: 385 EVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELG 444

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L   +++H ++ +  F G     NA+I MYA+CG+++ A  +F  M   + +SW +MI+
Sbjct: 445 SLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMIS 504

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
           A   HG  R AL  F++M  E I P+ ++F+ VL AC+H+GLVDEG + F SM  ++ I 
Sbjct: 505 ALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGII 564

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P  +HY  ++DL GRA  + EA +L++TMPF P   IW ++++ CR  G++EL   AA Q
Sbjct: 565 PGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQ 624

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           L ++ P HDG  +LLSN Y+   RW D   +RK M++RG+ KE  CS IE  N+V+ F+ 
Sbjct: 625 LFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVV 684

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            D  H +  ++Y+ L  V + ++  GYVPD    L D+E  +K  ++  HSE+LA+ +GL
Sbjct: 685 GDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGL 744

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +     + + ++KNLR+C+DCH  +  +SK   REIV+RD  RFHH+KDG CSC +YW
Sbjct: 745 LKLPPGATVTVLKNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/551 (39%), Positives = 338/551 (61%), Gaps = 31/551 (5%)

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
           R +F+ M  +D+V W+ +I G  +NGL+ E L +  EM  +N++PD   LS +L   +  
Sbjct: 254 RKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAEN 313

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
            ++S G+ +H   I   +  + ++ S+LI MYA C                         
Sbjct: 314 VDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCT------------------------ 349

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
                  +V D+  +F  + E+D I W+++I+G  +N    E LK F +M +  +KP   
Sbjct: 350 -------RVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSY 402

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           +  S++ ACAHL  L   +++H YI +N F  ++ + ++++DMYAKCG++ +AR++F+RM
Sbjct: 403 SFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRM 462

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471
           R R+++SWT+MI   A+HG A +A+  F +MK E I+PN V F+ VL ACSHAGLVDE  
Sbjct: 463 RLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAW 522

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
           + F SMT ++ I P  EHY  + DL GRA  L EA + +  MP  P   +W +L++ACRV
Sbjct: 523 KYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRV 582

Query: 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACS 591
           H  +++AE  A ++L++DP + GA +LL+NIY+  +RW++  + R S++  GI K  ACS
Sbjct: 583 HKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACS 642

Query: 592 RIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVI 651
            IE+ N+VY F+  D SH   ++I E +  ++  ++  GYVPD      D+E+E+K+ ++
Sbjct: 643 WIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLV 702

Query: 652 LWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHY 711
             HSE+LA+ +G+I++   + IR+ KNLRVC DCH   K +SK+  REIV+RD +RFHH+
Sbjct: 703 CSHSERLAIVFGIINTPAGTTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHF 762

Query: 712 KDGVCSCKDYW 722
           K+G CSC DYW
Sbjct: 763 KNGTCSCGDYW 773



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 183/380 (48%), Gaps = 37/380 (9%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           IF  +P       N  I   + +      L +  +M    L  D F+   +L  IA    
Sbjct: 256 IFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVD 315

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           + +G ++HG   + G  ++ +V + L+ MY  C +++D+  +F  ++ RD + W+ +I G
Sbjct: 316 ISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAG 375

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
             QNGLFDE L  F +M M+ ++P     S I+ AC+    L  G+ +H +I  N    +
Sbjct: 376 CVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDEN 435

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             + S+L+ MYA CG +  A+ +FD++ L+++V  TAM+ G +  G   D          
Sbjct: 436 IFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALD---------- 485

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
                                A++LF +M+  G++P+ V  ++V++AC+H G++D+A + 
Sbjct: 486 ---------------------AIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKY 524

Query: 373 HLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIH 429
              +  + FG    V +  A+ D+  + G LE A +    M      S W ++++A  +H
Sbjct: 525 FNSMTLD-FGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVH 583

Query: 430 GDARNALIFFNKMKDESIDP 449
            +   A    N++ +  +DP
Sbjct: 584 KNVDMAEKVANRILE--VDP 601



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/455 (22%), Positives = 191/455 (41%), Gaps = 68/455 (14%)

Query: 170 DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229
           D+  +F+ + +   + W  +I  Y  +GL  + L  F  M  S + PD  V   +L AC+
Sbjct: 60  DSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACA 119

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM-------AKGLFDKVLLK 282
              +L+ GE++H +II   +  D +  + L+ MY+    +         A  + D++  +
Sbjct: 120 MLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTER 179

Query: 283 NLVVSTAMVSGYSRAGQVED-----------ARLIFDQMVEKD----------------- 314
              V TA V   ++  +V D           +R    Q++E D                 
Sbjct: 180 TRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACNLGQ 239

Query: 315 -------------------------LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
                                    L+ W+ +I+G A N    E L +  EM    +KPD
Sbjct: 240 QIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPD 299

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
             T+ SV+   A    + + + IH    +     ++ V +++IDMYAKC  +  +  VF 
Sbjct: 300 SFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFT 359

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            +  R+ ISW S+I     +G     L FF +M    I P   +F  ++ AC+H   +  
Sbjct: 360 LLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHL 419

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G+++   +T              +VD++ +   +R A ++ + M    ++V W +++  C
Sbjct: 420 GKQLHGYITRN-GFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLR-DMVSWTAMIMGC 477

Query: 530 RVHGE----IELAEFAAKQLLQLDPDHDGALVLLS 560
            +HG     IEL  F   +   ++P++   + +L+
Sbjct: 478 ALHGHALDAIEL--FEQMKTEGIEPNYVAFMAVLT 510



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 119/293 (40%), Gaps = 38/293 (12%)

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           YS    + D+  +F+ +     + W ++I  Y  +  P ++L  F  M   G+ PD    
Sbjct: 52  YSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVF 111

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE-------SARE 406
            SV+ ACA L  L+  + +H YI +     DL   NA+++MY+K   L+        A +
Sbjct: 112 PSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQ 171

Query: 407 VFERM--RRRNVISWT----------SMINAFAIHGDARN------ALIFFNKMKDESID 448
           V + M  R R+V + +          S I AF      R+       L    K + E  +
Sbjct: 172 VLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYRE 231

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNE----YNI----PPKYEHYG---CMVDLF 497
                    +   SH+  VD  R+IF  M  +    +N       +   YG    MV   
Sbjct: 232 MEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREM 291

Query: 498 GRANLLREALELVETMPF-APNVVIW-GSLMAACRVHGEIELAEFAAKQLLQL 548
           G ANL  ++  L   +P  A NV I  G  +  C +   ++   + A  L+ +
Sbjct: 292 GGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDM 344


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/692 (34%), Positives = 385/692 (55%), Gaps = 39/692 (5%)

Query: 29   KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKF 88
            K+ H  +LKL     S  +++  L+   F         +  A ++F ++  P     N  
Sbjct: 490  KRVHGYVLKLGFG--SNTAVVNSLIAAYFKF-----GGVESAHNLFDELSEPDVVSWNSM 542

Query: 89   IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148
            I     +    + L++F++ML  G+ +D  +   +L A A    L  G  +HG G K  F
Sbjct: 543  INGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACF 602

Query: 149  GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
              +      L+ MY  CG +  A  +F KM    IV W+  I  Y + GL+ + + LF+E
Sbjct: 603  SEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDE 662

Query: 209  MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
            M+   V PD   ++ I+ AC+ + +L  G  VH ++I N +                   
Sbjct: 663  MQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG------------------ 704

Query: 269  MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
                          NL V+ A+++ Y++ G VE+ARL+F ++  KD++ W+ MI GY++N
Sbjct: 705  -------------SNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQN 751

Query: 329  NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
            + P EAL+LF +MQ    KPD +TM  V+ ACA L  LD+ + IH +I +  +  DL V 
Sbjct: 752  SLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVA 810

Query: 389  NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
             A++DMYAKCG L  A+ +F+ + ++++ISWT MI  + +HG    A+  FN+M+   I+
Sbjct: 811  CALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIE 870

Query: 449  PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
            P+  +F  +L ACSH+GL++EG + F SM NE  + PK EHY C+VDL  R   L +A +
Sbjct: 871  PDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYK 930

Query: 509  LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
             +E+MP  P+  IWG L++ CR+H +++LAE  A+ + +L+PD+    V+L+N+YA+ ++
Sbjct: 931  FIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEK 990

Query: 569  WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
            W++V +LRK M++RG  +   CS IE+  +   F+  +  H Q  +I   L ++  +++ 
Sbjct: 991  WEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQN 1050

Query: 629  AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
              Y       L++ +D EK  +   HSEK A+ +G+++      +R+ KN RVC DCH  
Sbjct: 1051 EDYFSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEM 1110

Query: 689  IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
             K +SK   REIV+RD  RFHH+KDG+CSC+D
Sbjct: 1111 GKFMSKTTKREIVLRDSNRFHHFKDGLCSCRD 1142



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 204/413 (49%), Gaps = 39/413 (9%)

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           S+  +L+  A  + L +G +VH +    G   D  +   LV MY  CG ++  R +FDK+
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKI 430

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
               +  W++++  Y + G F E ++LF++M+   V  +    + +L   +  G +   +
Sbjct: 431 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 490

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
            VH +++                                     N  V  ++++ Y + G
Sbjct: 491 RVHGYVLKLGFG-------------------------------SNTAVVNSLIAAYFKFG 519

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
            VE A  +FD++ E D++ W++MI+G   N      L++F +M + G++ D  T++SV+ 
Sbjct: 520 GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLV 579

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           A A++G L   + +H +  K  F  ++  +N ++DMY+KCG+L  A EVF +M    ++S
Sbjct: 580 AWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVS 639

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           WTS I A+   G   +A+  F++M+ + + P+  T   +++AC+ +  +D+GR++ + + 
Sbjct: 640 WTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVI 699

Query: 479 NE---YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
                 N+P        +++++ +   + EA  +   +P   ++V W +++  
Sbjct: 700 KNGMGSNLPVT----NALINMYAKCGSVEEARLVFSKIP-VKDIVSWNTMIGG 747



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 20/188 (10%)

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           SV+  CA    L+  +R+H  I  N    D  +   ++ MY  CG L   R++F+++   
Sbjct: 374 SVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 433

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI- 473
            V  W  +++ +A  G+ R ++  F KM+   +  N  TF  VL   +  G V E + + 
Sbjct: 434 KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVH 493

Query: 474 -------FASMTNEYN-IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
                  F S T   N +   Y  +G    +    NL  E  E        P+VV W S+
Sbjct: 494 GYVLKLGFGSNTAVVNSLIAAYFKFG---GVESAHNLFDELSE--------PDVVSWNSM 542

Query: 526 MAACRVHG 533
           +  C V+G
Sbjct: 543 INGCVVNG 550


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/612 (41%), Positives = 360/612 (58%), Gaps = 21/612 (3%)

Query: 129 RAEGLLEG-------MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
           RA  LL G        ++H    + G   D  V   L   Y A G++  A  +  +    
Sbjct: 32  RAAALLAGCASARRASELHAAAVRAGVDQDKAVDFRLQRAYAASGRLDLAVALLRRTPDP 91

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAV 240
             V ++  I  +   GL    L L  EM +S+ + P    LS  L AC   G L+ G A+
Sbjct: 92  TAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPAC---GGLAVGRAL 148

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS-TAMVSGYSRAGQ 299
           H + +   ++ + ++ + L+ MYA  G    A+ LFD +     VVS TAM++ Y++ G 
Sbjct: 149 HGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGL 208

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           ++DAR +FD +  KDLICW+AM+ GY ++  P EAL+LF  M   G++PD+V+++  +SA
Sbjct: 209 LDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSA 268

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGG---DLRVNNAIIDMYAKCGSLESAREVFERMRR--R 414
            A LG  +  + +H ++  ++      + RV  A+IDMY KCGSLE A  VF  +    R
Sbjct: 269 VAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDR 328

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           ++++W +M+N +A+HG +R AL  F +++ + + P  +TFIGVL ACSH+GLVDEGRE+F
Sbjct: 329 DIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELF 388

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA-PNVVIWGSLMAACRVHG 533
            SM  EY I PK EHYGCMVDL GRA  + EA ELV++M    P+ V+W SL+AACR+H 
Sbjct: 389 RSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHK 448

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
            +EL +  A  L+     + G  VLLSN+YA    W++VG +R  M+  GI KE  CS +
Sbjct: 449 NMELGQRIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAV 508

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH---SALVDLEDEEKREV 650
           E+   V EF+  DRSH +  +IY KL EV    +  G+VP        L D +   K + 
Sbjct: 509 EVGRRVVEFVAGDRSHPRAAEIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAAKEQA 568

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           +  HSEKLAL +GLIS+   + I+IVKNLR C DCH  +KLVS+V  R+IV RDR RFHH
Sbjct: 569 LAVHSEKLALAFGLISTPPGTAIKIVKNLRACADCHAVLKLVSEVTGRKIVFRDRNRFHH 628

Query: 711 YKDGVCSCKDYW 722
           + DG C+C DYW
Sbjct: 629 FVDGSCTCGDYW 640



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 5/174 (2%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A S+F  +P+      N  +   +   RP  AL++F +ML  G+  D  S    L A+A+
Sbjct: 212 ARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQ 271

Query: 130 AEGLLEGMQVHGLGTKLGFGS---DPFVQTGLVGMYGACGKILDARLMFDKMSY--RDIV 184
                 G  +H   T         +  V T L+ MY  CG + DA  +F  +    RDIV
Sbjct: 272 LGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIV 331

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
            W+ M++GY  +G   E L  F +++   + P ++    +L+ACS +G +  G 
Sbjct: 332 AWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGR 385


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/712 (34%), Positives = 390/712 (54%), Gaps = 41/712 (5%)

Query: 12  TLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYAL 71
           T P    + +C +L   ++ H  + KL        +  L  + + F            A 
Sbjct: 177 TFPP--VLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGI-------AR 227

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
           S+F  +P       N  I  +  +     AL V  +M  EG+ +D  +   IL   A+  
Sbjct: 228 SLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLG 287

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
            +     +H    K G   + FV   L+ MY   G + DA+ +F +M  RD+V W+ +I 
Sbjct: 288 DISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIA 347

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
            Y QN         F +M+++ +EPD + L  + S  +++ +     +VH FI       
Sbjct: 348 AYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFI------- 400

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
                              M +G     L++ +V+  A++  Y++ G ++ A  +F+ + 
Sbjct: 401 -------------------MRRGW----LMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIP 437

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVC-GMKPDKVTMLSVISACAHLGVLDQAQ 370
            KD++ W+ +ISGY +N    EA++++  M+ C  +K ++ T +S+++A AH+G L Q  
Sbjct: 438 VKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGM 497

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
           RIH ++ K     D+ V   +ID+Y KCG L  A  +F ++ R + + W ++I+   IHG
Sbjct: 498 RIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHG 557

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
               AL  F +M+DE + P+ VTFI +L ACSH+GLVDEG+  F  M  EY I P  +HY
Sbjct: 558 HGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLM-QEYGIKPSLKHY 616

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
           GCMVDL GRA  L  A + ++ MP  P+  IWG+L+ ACR+HG IEL +FA+ +L ++D 
Sbjct: 617 GCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDS 676

Query: 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK 610
           ++ G  VLLSNIYA   +W+ V ++R   +ERG+ K    S IE+N  V  F T ++SH 
Sbjct: 677 ENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHP 736

Query: 611 QTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD 670
           +  +IY +L  + +++K  GY+PD    L D+E++EK  ++  HSE+LA+ +G+IS+   
Sbjct: 737 KCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPK 796

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S IRI KNLRVC DCHN  K +S++  REIV+RD  RFHH+K+G+CSC DYW
Sbjct: 797 SAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 151/560 (26%), Positives = 276/560 (49%), Gaps = 48/560 (8%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           QP K   +  ++   SC+     K+ HA +L +S    S N + ++L+    SL   + S
Sbjct: 70  QPAKNEEIDFNSLFDSCTKTLLAKRLHA-LLVVSGKIQS-NFISIRLVNLYASLGDVSLS 127

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML-NEGLTIDRFSFPPIL 124
                   F QI        N  I A   +   + A+  F ++L       D ++FPP+L
Sbjct: 128 R-----GTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVL 182

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           KA    + L++G ++H    KLGF  D FV   L+ MY   G +  AR +FD M +RD+ 
Sbjct: 183 KA---CQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMG 239

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ MI G  QNG   + L++ +EM++  +  D + ++ IL  C++ G++S    +H ++
Sbjct: 240 SWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYV 299

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           I + +  +  + + LI MYA  G +  A+ +F ++ L+++V                   
Sbjct: 300 IKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVV------------------- 340

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                        W+++I+ Y +N+ P  A   F +MQ+ G++PD +T++S+ S  A   
Sbjct: 341 ------------SWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSR 388

Query: 365 VLDQAQRIHLYIDKNAFGGD-LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
               ++ +H +I +  +  + + + NA++DMYAK G ++SA +VF  +  ++V+SW ++I
Sbjct: 389 DYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLI 448

Query: 424 NAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           + +  +G A  A+  +  M++   I  N  T++ +L A +H G + +G  I   +    N
Sbjct: 449 SGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKT-N 507

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEF 540
           +        C++DL+G+   L +A+ L   +P   + V W ++++   +HG  E  L  F
Sbjct: 508 LHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVP-RESSVPWNAIISCHGIHGHGEKALKLF 566

Query: 541 AAKQLLQLDPDHDGALVLLS 560
              Q   + PDH   + LLS
Sbjct: 567 REMQDEGVKPDHVTFISLLS 586


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/613 (40%), Positives = 365/613 (59%), Gaps = 7/613 (1%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           +  CSS+  +K  HAQI+   H   +Q   L KLL    SL       L YA  +F QIP
Sbjct: 46  LDQCSSMKRLKLVHAQIIL--HGLAAQVVTLGKLL----SL-CVQEGDLRYAHLLFDQIP 98

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P   + N  IR  S S+ P  +L +F +M++ G   ++F+FP +LKA A      E + 
Sbjct: 99  QPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVI 158

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           VH    KLG G    VQ  ++  Y AC  IL AR +FD +S R IV W+ MI GY + G 
Sbjct: 159 VHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGF 218

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
            DE + LF+EM    VE D   L  +LSA S+  NL  G  VH +I+   V +D+ + + 
Sbjct: 219 CDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNA 278

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           LI MYA CG +  AK +FD++L K++V  T+MV+ Y+  G VE+A  IF+ M  K+++ W
Sbjct: 279 LIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSW 338

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +++I    +     EA++LF+ M + G+ PD  T++S++S C++ G L   ++ H YI  
Sbjct: 339 NSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICD 398

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
           N     + + N++IDMYAKCG+L++A ++F  M  +NV+SW  +I A A+HG    A+  
Sbjct: 399 NIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEM 458

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F  M+   + P+ +TF G+L ACSH+GLVD GR  F  M + + I P  EHY CMVDL G
Sbjct: 459 FKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLG 518

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558
           R   L EA+ L++ MP  P+VV+WG+L+ ACR++G +E+A+   KQLL+L   + G  VL
Sbjct: 519 RGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVL 578

Query: 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEK 618
           LSN+Y++ +RW D+ ++RK M + GI K RA S IE++   Y+F+  D+ H  +  IY  
Sbjct: 579 LSNMYSESQRWDDMKKIRKIMDDSGIKKCRAISFIEIDGCCYQFMVDDKRHCASTGIYSI 638

Query: 619 LNEVISELKPAGY 631
           L++++  LK  GY
Sbjct: 639 LDQLMDHLKSVGY 651


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/606 (38%), Positives = 355/606 (58%), Gaps = 21/606 (3%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD-ARLMFDKMSYRDIVPWSVMIDGYFQN 196
           Q+H +  K G   DP     ++       + +D AR +F +M   +   W+ ++    + 
Sbjct: 37  QLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAET 96

Query: 197 G---LFDEVLNLFEEMKM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
               L  E L LF  M     V+P+      +L AC+RA  L  G+ +H  I+      D
Sbjct: 97  NDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHED 156

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLK----------------NLVVSTAMVSGYSR 296
             + S L+ MY  C  M+ A  LF K ++                 N+V+   M+ G  R
Sbjct: 157 EFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVR 216

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
            G ++ A+ +FD+M ++ ++ W+ MISGYA+N H  EA+ LF EMQ   + P+ VT++SV
Sbjct: 217 LGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSV 276

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           + A A +G L+  + IHLY  KN    D  + +A++DMY+KCGS++ A +VFE + +RN 
Sbjct: 277 LPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNA 336

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           I+W+++I AFA+HG A +A+I F+ M    + PN V +IG+L ACSHAGLV+EGR  F+ 
Sbjct: 337 ITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSH 396

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           M     + P+ EHYGCMVDL GRA  L EA EL+  MP  P+ VIW +L+ AC++H  ++
Sbjct: 397 MVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLK 456

Query: 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMN 596
           + E  A+ L++L P   G+ V LSN+YA    W+ V  +R  MK   I K+  CS IE++
Sbjct: 457 MGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIH 516

Query: 597 NEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSE 656
             ++EFL  D SH +  +I   L E+  +L+  GY P+     ++ +++E+   + +HSE
Sbjct: 517 GIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSE 576

Query: 657 KLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVC 716
           K+A+ +GLIS+     ++IVKNLR+CEDCH  +KL+S +Y R+I++RDR RFH ++ G C
Sbjct: 577 KIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSC 636

Query: 717 SCKDYW 722
           SC DYW
Sbjct: 637 SCMDYW 642



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 136/481 (28%), Positives = 225/481 (46%), Gaps = 94/481 (19%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P  PL L  S   +SC +   +KQ HA  +K   +   Q+ L    ++   +  +     
Sbjct: 16  PQPPLIL--SKPFTSCKTPRDLKQLHAIFIK---TGQIQDPLTAAEVIKFCAFSS---RD 67

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWS---HRPKHALKVFLKMLNEG-LTIDRFSFPP 122
           + YA ++F Q+P P     N  +R ++ +   H    AL +F  ML +G +  +RF+FP 
Sbjct: 68  IDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY-------------------- 162
           +LKA ARA  L EG Q+HGL  K GF  D FV + LV MY                    
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187

Query: 163 -GAC--------------------------GKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
            G+C                          G I  A+ +FD+M  R +V W+VMI GY Q
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQ 247

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           NG F E +NLF+EM+ SN++P+ + L  +L A +R G L  G+ +H +   N + +D  L
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVL 307

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            S L+ MY+ CG +D A  +F+ +  +N +  +A++  ++  G+ EDA + F  M     
Sbjct: 308 GSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLM----- 362

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
                   G A                  G+ P+ V  + ++SAC+H G++++ +    +
Sbjct: 363 --------GKA------------------GVTPNDVAYIGILSACSHAGLVEEGRSFFSH 396

Query: 376 IDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDA 432
           + K   G   R+ +   ++D+  + G LE A E+   M    + + W +++ A  +H + 
Sbjct: 397 MVK-VVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNL 455

Query: 433 R 433
           +
Sbjct: 456 K 456


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/572 (40%), Positives = 347/572 (60%), Gaps = 13/572 (2%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           DPFV   L+ +      I  A  +F      ++  ++ +IDG   +  + + ++L+ +M 
Sbjct: 63  DPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMI 122

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
            S++ PD   ++ +L AC     L  G  VH  ++   ++ +  ++  LI +Y  CG  +
Sbjct: 123 NSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFE 182

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            A+ +FD++  +++V ST M++ Y            FD  + KD +CW+AMI G   N  
Sbjct: 183 DARRVFDEMPERDVVASTVMINYY------------FDHGI-KDTVCWTAMIDGLVRNGE 229

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
              AL++F  MQ   + P++VT++ V+SAC+ LG L   + +  Y+DK+    +  V  A
Sbjct: 230 SNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGA 289

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           +I+MY++CG ++ A+ VFE+M+ +NVI++ SMI  FA+HG +  A+  F  +  +   P+
Sbjct: 290 LINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPS 349

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
            VTF+GVL ACSH GL + G EIF SM  +Y I P+ EHYGCMVDL GR   L EA   +
Sbjct: 350 SVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFI 409

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
             M  AP+ V+ G+L++AC++HG +ELAE  AK L+       G  +LLSN Y+   +W+
Sbjct: 410 RMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWK 469

Query: 571 DVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAG 630
           +  E+R +M+E GI KE  CS IE+NNE++EFL  D  H Q ++IY+KL E+   L+  G
Sbjct: 470 EAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEG 529

Query: 631 YVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIK 690
           Y P     L D+E  EK   +  HSE+LA+CYGLIS+K  + +R+VKNLRVC DCH  IK
Sbjct: 530 YTPATEVVLHDIEKSEKEWALAIHSERLAICYGLISTKPLTTLRVVKNLRVCNDCHLTIK 589

Query: 691 LVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           L+S +  R+IV+RDR RFHH+++GVCSC DYW
Sbjct: 590 LISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621



 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 202/447 (45%), Gaps = 59/447 (13%)

Query: 8   TKPLTLPTSTA--ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           TKP   P      IS   +  H  Q      K+  +HH Q+  ++  LL   S      +
Sbjct: 23  TKPKNTPNRRRHFISLLQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELLRVCS----NLN 78

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           S+ YA  IFS    P   +    I  +  S      + ++ +M+N  L  D ++   +LK
Sbjct: 79  SIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLK 138

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A      L EG +VH    KLG  S+  ++  L+ +YG CG   DAR +FD+M  RD+V 
Sbjct: 139 ACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVA 198

Query: 186 ------------------WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
                             W+ MIDG  +NG  +  L +F  M+  +V P+E+ +  +LSA
Sbjct: 199 STVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSA 258

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           CS  G L  G  V  ++  + + L+  +   LI MY+ CG +D A+ +F+++  KN++  
Sbjct: 259 CSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITY 318

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
            +M+ G++  G+                                 EA++LF  +   G  
Sbjct: 319 NSMIMGFALHGK-------------------------------SVEAVELFRGLIKQGFT 347

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAR 405
           P  VT + V++AC+H G+ +    I   + K+ +G + ++ +   ++D+  + G LE A 
Sbjct: 348 PSSVTFVGVLNACSHGGLAELGFEIFHSMAKD-YGIEPQIEHYGCMVDLLGRLGRLEEAY 406

Query: 406 EVFERMR-RRNVISWTSMINAFAIHGD 431
                M+   + +   ++++A  IHG+
Sbjct: 407 SFIRMMKVAPDHVMLGALLSACKIHGN 433



 Score = 42.4 bits (98), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 78/180 (43%), Gaps = 19/180 (10%)

Query: 345 GMKPDKVT-----MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           G KP          +S++  C H    +Q   I+  I +N    D  V   ++ + +   
Sbjct: 22  GTKPKNTPNRRRHFISLLQNCKHN---NQIPPIYAKIIRNHHHQDPFVVFELLRVCSNLN 78

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           S+  A ++F   +  NV  +T++I+   +     + +  + +M + S+ P+      VL 
Sbjct: 79  SIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLK 138

Query: 460 ACSHAGLVDEGREIFA-----SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           AC     + EGRE+ +      +++  +I  K      +++L+G+     +A  + + MP
Sbjct: 139 ACGCHLALKEGREVHSQVLKLGLSSNRSIRIK------LIELYGKCGAFEDARRVFDEMP 192


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/645 (37%), Positives = 373/645 (57%), Gaps = 6/645 (0%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           MST+++          + +  C +    KQ H+Q +    +    N    K L   +   
Sbjct: 23  MSTITESISNDYSRFISILGVCKTTDQFKQLHSQSITRGVA---PNPTFQKKLFVFWC-- 77

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
           +     + YA  +F +IP P   V N  I+  S        ++++L ML EG+T D  +F
Sbjct: 78  SRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTF 137

Query: 121 PPILKAIARAEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           P +L  + R  G L  G ++H    K G GS+ +VQ  LV MY  CG +  AR +FD+  
Sbjct: 138 PFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRC 197

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
             D+  W++MI GY +   ++E + L  EM+ + V P  + L  +LSACS+  +    + 
Sbjct: 198 KEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKR 257

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           VHE++ +        L++ L+  YA CG MD+A  +F  +  ++++  T++V GY   G 
Sbjct: 258 VHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGN 317

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           ++ AR  FDQM  +D I W+ MI GY       E+L++F EMQ  GM PD+ TM+SV++A
Sbjct: 318 LKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTA 377

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           CAHLG L+  + I  YIDKN    D+ V NA+IDMY KCG  E A++VF  M +R+  +W
Sbjct: 378 CAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTW 437

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           T+M+   A +G  + A+  F +M+D SI P+ +T++GVL AC+H+G+VD+ R+ FA M +
Sbjct: 438 TAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRS 497

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
           ++ I P   HYGCMVD+ GRA L++EA E++  MP  PN ++WG+L+ A R+H +  +AE
Sbjct: 498 DHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAE 557

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
            AAK++L+L+PD+     LL NIYA  KRW+D+ E+R+ + +  I K    S IE+N   
Sbjct: 558 LAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFA 617

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLED 644
           +EF+  D+SH Q+++IY KL E+  E   A Y+PD    L +  D
Sbjct: 618 HEFVAGDKSHLQSEEIYMKLEELAQESTFAAYLPDTSELLFEAGD 662


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/612 (38%), Positives = 376/612 (61%), Gaps = 8/612 (1%)

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG---MYGACGKILDARLMF 175
           S  P++  + + + L E  Q+H    K    +  F  + L+    + G  G +  A  +F
Sbjct: 5   STNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVF 64

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK--MSNVEPDEMVLSKILSACSRAGN 233
            ++ + +   +  +I G+       E L L+  M   ++     E  +  +L AC +   
Sbjct: 65  SRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLA 124

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
              G  VH  ++  ++  D  + ++++ MY + G +++A+ +FD++  +++V   +M++G
Sbjct: 125 FDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAG 184

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           Y +AG++E A+ +F+ M +KD++ W++MIS Y +N  P +AL LF EM   G++PD   +
Sbjct: 185 YLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAI 244

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFG-GDLRVNNAIIDMYAKCGSLESAREVFERM- 411
           +SV+SA A LG +++ + +H Y+  N        + +A+IDMY+KCG +E+A  VF  + 
Sbjct: 245 VSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSIS 304

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471
            RRN+  W SMI+  AIHG AR AL  F +M+   I+PN +TF+G+L  CSH GLV+EG+
Sbjct: 305 HRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQ 364

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
             F SM  +Y I P+ +HYGCM+DLFGRA  L +AL +++ MPF  +++ W ++++A   
Sbjct: 365 FYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMK 424

Query: 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACS 591
           HG IE+ + AA + ++L PD   + VLLSNIYAK  RW DV ++R  M++RG+ K   CS
Sbjct: 425 HGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCS 484

Query: 592 RIEMNNEVYEFLTA-DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
            + +N +V+EFL   +     + Q+  K+ EV+S LK  GY PD+   L+D+EDE K  +
Sbjct: 485 SMLVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESL 544

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           +  HSEK+A+ +GLI   K + I IVKNLRVC DCH F+KLVSKVY R+I++RD+ RFHH
Sbjct: 545 LNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHH 604

Query: 711 YKDGVCSCKDYW 722
           +++G CSC +YW
Sbjct: 605 FENGCCSCNEYW 616



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 211/460 (45%), Gaps = 80/460 (17%)

Query: 12  TLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYAL 71
           T P  + +  C SL  ++Q HAQ++K +  +H          L +F   +     L YA 
Sbjct: 6   TNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQ----FTVSRLIAFCSLSGVSGGLDYAS 61

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML---NEGLTIDRFSFPPILKAIA 128
           S+FS+I  P S +    I+  S +  P  +L ++ +ML   N    ++ FS P +LKA  
Sbjct: 62  SVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVE-FSIPSVLKACG 120

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           +     EG QVHG   K     DPFV   +V MY   G+I  AR +FD+M  RD+V W+ 
Sbjct: 121 KLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNS 180

Query: 189 MIDGYFQNGLFD-------------------------------EVLNLFEEMKMSNVEPD 217
           MI GY + G  +                               + L+LF EM    + PD
Sbjct: 181 MIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPD 240

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA-HLQSTLITMYANCGCMDMAKGLF 276
              +  +LSA +  G +  G+ +H ++  N + L +  + S LI MY+ CG ++ A  +F
Sbjct: 241 GPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVF 300

Query: 277 DKVL-LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
             +   +N+    +M+SG +                          I G A     +EAL
Sbjct: 301 RSISHRRNIGDWNSMISGLA--------------------------IHGLA-----REAL 329

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ----RIHLYIDKNAFGGDLRVNNAI 391
            +F EM+   ++P+++T L ++S C+H G++++ Q     +H   +K      ++    +
Sbjct: 330 DIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMH---EKYKIVPRIQHYGCM 386

Query: 392 IDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHG 430
           ID++ + G LE A  V + M    ++++W ++++A   HG
Sbjct: 387 IDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHG 426


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/654 (36%), Positives = 373/654 (57%), Gaps = 33/654 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A+++F  I  P     N  I           AL +  +M   G   + F+    LKA A 
Sbjct: 237 AVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACA- 295

Query: 130 AEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           A G  E G Q+H    K+   SD F   GLV MY  C  + DAR  +D M  +DI+ W+ 
Sbjct: 296 AMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNA 355

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I GY Q G   + ++LF +M   +++ ++  LS +L + +    +   + +H   I + 
Sbjct: 356 LISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSG 415

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           +  D ++ ++L+  Y  C                                 +++A  IF+
Sbjct: 416 IYSDFYVINSLLDTYGKCN-------------------------------HIDEASKIFE 444

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           +   +DL+ +++MI+ Y++    +EALKL+ +MQ   +KPD     S+++ACA+L   +Q
Sbjct: 445 ERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQ 504

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            +++H++  K  F  D+  +N++++MYAKCGS+E A   F  +  R ++SW++MI  +A 
Sbjct: 505 GKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQ 564

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG  + AL  FN+M  + + PN +T + VL AC+HAGLV+EG++ F  M   + I P  E
Sbjct: 565 HGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQE 624

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HY CM+DL GR+  L EA+ELV ++PF  +  +WG+L+ A R+H  IEL + AAK L  L
Sbjct: 625 HYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDL 684

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           +P+  G  VLL+NIYA    W++V ++RK MK+  + KE   S IE+ ++VY F+  DRS
Sbjct: 685 EPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRS 744

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
           H ++D+IY KL+++   L  AGY   +   + +++  EK +++  HSEKLA+ +GLI++ 
Sbjct: 745 HSRSDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATP 804

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
               IR+ KNLR+C DCH F K V K+ +REI++RD  RFHH+KDG CSC DYW
Sbjct: 805 PGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 125/450 (27%), Positives = 226/450 (50%), Gaps = 36/450 (8%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + AL VF +M   G+  + F+FP +LKA +    L  G +VHG+    GF SD FV   L
Sbjct: 64  EEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTL 123

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           V MY  CG + D+R +F  +  R++V W+ +   Y Q+ L  E + LF+EM  S + P+E
Sbjct: 124 VVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNE 183

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
             +S IL+AC+       G  +H  ++   + LD    + L+ MY+  G           
Sbjct: 184 FSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAG----------- 232

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
                               ++E A  +F  +   D++ W+A+I+G   ++    AL L 
Sbjct: 233 --------------------EIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLL 272

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           +EM+  G +P+  T+ S + ACA +G  +  +++H  + K     DL     ++DMY+KC
Sbjct: 273 DEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKC 332

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
             ++ AR  ++ M ++++I+W ++I+ ++  GD  +A+  F+KM  E ID N  T   VL
Sbjct: 333 EMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVL 392

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            + +    +   ++I  +++ +  I   +     ++D +G+ N + EA ++ E   +  +
Sbjct: 393 KSVASLQAIKVCKQIH-TISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTW-ED 450

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           +V + S++ A   +G+    E A K  LQ+
Sbjct: 451 LVAYTSMITAYSQYGD---GEEALKLYLQM 477



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 207/430 (48%), Gaps = 50/430 (11%)

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
           M++H    K GF  DP ++  LV +Y  C +   AR + D+ S  D+V WS ++ GY QN
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           G  +E L +F EM +  V+ +E     +L ACS   +L+ G  VH   +      D  + 
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           +TL+ MYA CG +                               +D+R +F  +VE++++
Sbjct: 121 NTLVVMYAKCGLL-------------------------------DDSRRLFGGIVERNVV 149

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            W+A+ S Y ++    EA+ LF EM   G+ P++ ++  +++ACA L   D  ++IH  +
Sbjct: 150 SWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLM 209

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            K     D    NA++DMY+K G +E A  VF+ +   +V+SW ++I    +H     AL
Sbjct: 210 LKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLAL 269

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
           +  ++MK     PN  T    L AC+  G  + GR++ +S+         +   G +VD+
Sbjct: 270 MLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVG-LVDM 328

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
           + +  ++ +A    ++MP   +++ W +L++     G                 DH  A+
Sbjct: 329 YSKCEMMDDARRAYDSMP-KKDIIAWNALISGYSQCG-----------------DHLDAV 370

Query: 557 VLLSNIYAKD 566
            L S ++++D
Sbjct: 371 SLFSKMFSED 380



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/454 (26%), Positives = 220/454 (48%), Gaps = 35/454 (7%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A+ +F +M+  G+  + FS   IL A A  +    G ++HGL  K+G   D F    LV 
Sbjct: 167 AVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVD 226

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY   G+I  A  +F  +++ D+V W+ +I G   +   D  L L +EMK S   P+   
Sbjct: 227 MYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFT 286

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           LS  L AC+  G    G  +H  +I     +DAH       ++A  G +DM         
Sbjct: 287 LSSALKACAAMGFKELGRQLHSSLIK----MDAHSD-----LFAAVGLVDM--------- 328

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                        YS+   ++DAR  +D M +KD+I W+A+ISGY++     +A+ LF++
Sbjct: 329 -------------YSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSK 375

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M    +  ++ T+ +V+ + A L  +   ++IH    K+    D  V N+++D Y KC  
Sbjct: 376 MFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNH 435

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           ++ A ++FE     +++++TSMI A++ +GD   AL  + +M+D  I P+      +L A
Sbjct: 436 IDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNA 495

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           C++    ++G+++      ++           +V+++ +   + +A      +P    +V
Sbjct: 496 CANLSAYEQGKQLHVHAI-KFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIP-NRGIV 553

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQ--LDPDH 552
            W +++     HG  + A     Q+L+  + P+H
Sbjct: 554 SWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNH 587



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 199/430 (46%), Gaps = 49/430 (11%)

Query: 8   TKPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP 64
           T+P     S+A+ +C+++      +Q H+ ++K+     + + L   + L       +  
Sbjct: 280 TRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMD----AHSDLFAAVGLVDM---YSKC 332

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
             +  A   +  +P       N  I   S       A+ +F KM +E +  ++ +   +L
Sbjct: 333 EMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVL 392

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           K++A  + +    Q+H +  K G  SD +V   L+  YG C  I +A  +F++ ++ D+V
Sbjct: 393 KSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLV 452

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            ++ MI  Y Q G  +E L L+ +M+ ++++PD  + S +L+AC+       G+ +H   
Sbjct: 453 AYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHA 512

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           I      D    ++L+ MYA CG ++ A   F ++  + +V  +AM+ GY++ G      
Sbjct: 513 IKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHG------ 566

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                                    H +EAL+LFN+M   G+ P+ +T++SV+ AC H G
Sbjct: 567 -------------------------HGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAG 601

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNN----AIIDMYAKCGSLESAREVFERMR-RRNVISW 419
           ++++ ++   Y +K      ++        +ID+  + G L  A E+   +    +   W
Sbjct: 602 LVNEGKQ---YFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVW 658

Query: 420 TSMINAFAIH 429
            +++ A  IH
Sbjct: 659 GALLGAARIH 668


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/620 (36%), Positives = 358/620 (57%), Gaps = 32/620 (5%)

Query: 103 KVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162
           ++ +++L EG   + ++F  ILK  A    L EG  +HG   K G   D  +   LV +Y
Sbjct: 177 RILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVY 236

Query: 163 GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
             CG    A  +F ++  RD+V W+ +I G+   G +   L +F +M      P+     
Sbjct: 237 AKCGSANYACKVFGEIPERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFI 295

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            IL +CS   ++  G+ VH  I+ N  +LD                              
Sbjct: 296 SILRSCSSLSDVDLGKQVHAQIVKN--SLDG----------------------------- 324

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           N  V TA+V  Y++   +EDA  IF++++++DL  W+ +++GYA++   ++A+K F +MQ
Sbjct: 325 NDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQ 384

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
             G+KP++ T+ S +S C+ +  LD  +++H    K    GD+ V +A++DMYAKCG +E
Sbjct: 385 REGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVE 444

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            A  VF+ +  R+ +SW ++I  ++ HG    AL  F  M DE   P+ VTFIGVL ACS
Sbjct: 445 DAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACS 504

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
           H GL++EG++ F S++  Y I P  EHY CMVD+ GRA    E    +E M    NV+IW
Sbjct: 505 HMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIW 564

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582
            +++ AC++HG IE  E AA +L +L+P+ D   +LLSN++A    W DV  +R  M  R
Sbjct: 565 ETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTR 624

Query: 583 GILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDL 642
           G+ KE  CS +E+N +V+ FL+ D SH +  +I+ KL ++  +L   GY P+    L ++
Sbjct: 625 GVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNV 684

Query: 643 EDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVI 702
            D EK+E++ +HSE+LAL + L+S+     IRI KNLR+C DCH+F+K +S++  +E+V+
Sbjct: 685 SDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVV 744

Query: 703 RDRTRFHHYKDGVCSCKDYW 722
           RD   FHH+K+G CSC+++W
Sbjct: 745 RDINCFHHFKNGSCSCQNFW 764



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 188/405 (46%), Gaps = 39/405 (9%)

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           K G   D  + + LV +Y  C  +  AR + ++M  +D+  W+  +          E + 
Sbjct: 17  KNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQ 76

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           LF  M+ + +  ++ + + ++SA +  G+  YGE++H                       
Sbjct: 77  LFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHA---------------------- 114

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
            C C     G    +L+ N     A V+ Y +   VE+    F  M+ ++L   + ++SG
Sbjct: 115 -CVC---KYGFESDILISN-----AFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSG 165

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           + +     +  ++  ++ V G +P+  T +S++  CA  G L++ + IH  + K+    D
Sbjct: 166 FCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPD 225

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
             + N+++++YAKCGS   A +VF  +  R+V+SWT++I  F   G   + L  FN+M  
Sbjct: 226 SHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLA 284

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG-CMVDLFGRANLL 503
           E  +PN  TFI +L +CS    VD G+++ A +    N     +  G  +VD++ +   L
Sbjct: 285 EGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVK--NSLDGNDFVGTALVDMYAKNRFL 342

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
            +A E +       ++  W  ++A     G+    E A K  +Q+
Sbjct: 343 EDA-ETIFNRLIKRDLFAWTVIVAGYAQDGQ---GEKAVKCFIQM 383



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 10/238 (4%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           L++   P      + + SCSSL+ +   KQ HAQI+K S      N  +   L+  ++  
Sbjct: 283 LAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNS---LDGNDFVGTALVDMYA-- 337

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
                 L  A +IF+++           +   +   + + A+K F++M  EG+  + F+ 
Sbjct: 338 --KNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTL 395

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
              L   +R   L  G Q+H +  K G   D FV + LV MY  CG + DA ++FD +  
Sbjct: 396 ASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVS 455

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
           RD V W+ +I GY Q+G   + L  FE M      PDE+    +LSACS  G +  G+
Sbjct: 456 RDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGK 513



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/377 (20%), Positives = 159/377 (42%), Gaps = 68/377 (18%)

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           +I N +  D+HL S+L+ +Y  C  +                               + A
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESL-------------------------------QCA 43

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHP-QEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           R + ++M  +D+  W+  +S  A + +P QEA++LF  M+   ++ ++    S+ISA A 
Sbjct: 44  RQVLEEMPIQDVQQWNQKLSS-ANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAAS 102

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           LG     + IH  + K  F  D+ ++NA + MY K  S+E+  + F+ M   N+ S  ++
Sbjct: 103 LGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNL 162

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           ++ F              ++  E  +PN  TFI +L  C+  G ++EG+ I   +     
Sbjct: 163 LSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKS-G 221

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMP---------------------------- 514
           I P    +  +V+++ +      A ++   +P                            
Sbjct: 222 INPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGLRIFNQ 281

Query: 515 -----FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD-HDGALVLLSNIYAKDKR 568
                F PN+  + S++ +C    +++L +    Q+++   D +D     L ++YAK++ 
Sbjct: 282 MLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRF 341

Query: 569 WQDVGELRKSMKERGIL 585
            +D   +   + +R + 
Sbjct: 342 LEDAETIFNRLIKRDLF 358



 Score = 43.9 bits (102), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 96/230 (41%), Gaps = 34/230 (14%)

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           ++I   + KN    D  + ++++++Y KC SL+ AR+V E M  ++V  W   +++    
Sbjct: 9   KKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSP 68

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS-----------MT 478
              + A+  F  M+   I  N   F  ++ A +  G    G  I A            ++
Sbjct: 69  YPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILIS 128

Query: 479 NEY--------NIPPKYEHYGCMV--DLFGRANLLRE--ALELVETMP----------FA 516
           N +        ++   ++ +  M+  +L  R NLL      E  +  P          F 
Sbjct: 129 NAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFE 188

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV-LLSNIYAK 565
           PN+  + S++  C   G++   +    Q+++   + D  L   L N+YAK
Sbjct: 189 PNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAK 238


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/701 (34%), Positives = 385/701 (54%), Gaps = 38/701 (5%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           + +C SL   K+ H  + K+        +  L  L + + +       L  A  +F  +P
Sbjct: 131 LKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGV-------LDVAHKVFVDMP 183

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
                  N  I     +     AL V  +M  EG+ +D  +   IL   A+++ ++ G+ 
Sbjct: 184 VKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVL 243

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H    K G  SD FV   L+ MY   G++ DA+++FD+M  RD+V W+ +I  Y QN  
Sbjct: 244 IHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNND 303

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
               L  F+ M++  + PD + +  + S  S+  +     ++  F+I             
Sbjct: 304 PSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRR----------- 352

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
                              + L K++V+  A+V+ Y++ G +  A  +FDQ+  KD I W
Sbjct: 353 -------------------EWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISW 393

Query: 319 SAMISGYAENNHPQEALKLFNEMQVC-GMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           + +++GY +N    EA+  +N M+ C    P++ T +S+I A +H+G L Q  +IH  + 
Sbjct: 394 NTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLI 453

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           KN+   D+ V   +ID+Y KCG LE A  +F  + R   + W ++I +  IHG    AL 
Sbjct: 454 KNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQ 513

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F  M  E +  + +TF+ +L ACSH+GLVDEG++ F  M  EY I P  +HYGCMVDL 
Sbjct: 514 LFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLL 573

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557
           GRA  L +A ELV  MP  P+  IWG+L++AC+++G  EL   A+ +LL++D ++ G  V
Sbjct: 574 GRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYV 633

Query: 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYE 617
           LLSNIYA  ++W+ V ++R   ++RG+ K    S + + ++   F T +++H +  +IY+
Sbjct: 634 LLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYK 693

Query: 618 KLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVK 677
           +L  + +++K  GYVPD      D+E++EK +++  HSE+LA+ +G+IS+   S IRI K
Sbjct: 694 ELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFK 753

Query: 678 NLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           NLRVC DCHN  K +S++  REIV+RD  RFHH+KDG+CSC
Sbjct: 754 NLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSC 794



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 152/553 (27%), Positives = 262/553 (47%), Gaps = 59/553 (10%)

Query: 20  SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA 79
           +SC ++   K+ HA +L    S   QN +L   L+  +     T   +  + S F  I  
Sbjct: 30  NSCVNVNATKKLHALLLVFGKS---QNIVLSTKLINLY----VTHGDISLSRSTFDYIHK 82

Query: 80  PPSRVSNKFIRA---ISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLE 135
                 N  I A       H   + +     M   G L  D ++FPPILKA      L++
Sbjct: 83  KNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVD 139

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G +VH    K+GF  D FV   LV +Y   G +  A  +F  M  +D+  W+ MI G+ Q
Sbjct: 140 GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQ 199

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           NG     L +   MK   V+ D + ++ IL  C+++ ++  G  +H  ++ + +  D  +
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFV 259

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            + LI MY+  G +  A+ +FD                               QM  +DL
Sbjct: 260 SNALINMYSKFGRLQDAQMVFD-------------------------------QMEVRDL 288

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH-- 373
           + W+++I+ Y +NN P  AL+ F  MQ+ G++PD +T++S+ S  + L      QRI   
Sbjct: 289 VSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQL----SDQRISRS 344

Query: 374 ---LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
                I +     D+ + NA+++MYAK G +  A  VF+++ R++ ISW +++  +  +G
Sbjct: 345 ILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNG 404

Query: 431 DARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
            A  A+  +N M++     PN  T++ ++ A SH G + +G +I A +    ++      
Sbjct: 405 LASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN-SLYLDVFV 463

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL--Q 547
             C++DL+G+   L +A+ L   +P   +V  W +++A+  +HG  E A    K +L  +
Sbjct: 464 ATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIHGRGEEALQLFKDMLAER 522

Query: 548 LDPDHDGALVLLS 560
           +  DH   + LLS
Sbjct: 523 VKADHITFVSLLS 535


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/624 (39%), Positives = 371/624 (59%), Gaps = 42/624 (6%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACG--KILD-ARLMFDKMSYRDIVPWSVMIDGYF 194
           QVH    K G  +DP +   L+ ++ A      LD AR +F      D+   + +I G  
Sbjct: 23  QVHAYVCKTGLDTDPIIAGKLL-LHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLA 81

Query: 195 QNGLFDEVLNLFEEMKMSNVEP-DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
           ++      L  F EM+     P D    + +L A +   +L  G  +H   I +   LD 
Sbjct: 82  ESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVH--GLDT 139

Query: 254 HL--QSTLITMYANCGCMDMAKGLFDKVL------------------------------- 280
           HL   +TL++MY+ CG +  AK +F+++                                
Sbjct: 140 HLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMP 199

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            +NL     M++GY++AG++E AR +F +M  KD + WS MI G+A N    EA   F E
Sbjct: 200 FRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRE 259

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           +Q  GM+P++V++   +SACA  G ++  + +H +I+K+ F   + VNNA++D Y+KCG+
Sbjct: 260 LQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGN 319

Query: 401 LESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           +  AR VFERM  +R+++SWTSMI   A+HG    A+  F++M++  I P+G+ FI +LY
Sbjct: 320 VGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILY 379

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           ACSHAGL+++G E F  M + YNI P  EHYGCMVDL+GRA  L +A E +  MP  P  
Sbjct: 380 ACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTA 439

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
           +IW +L+ AC +HG ++LAE   ++L +LDP++ G  VLLSNIYA   +W+DV  +R+SM
Sbjct: 440 IIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSM 499

Query: 580 KERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAG-YVPDIHSA 638
            ++ + K    S IE++  +Y F+  +  +  T++ YEKL E++ +L+  G Y+P++ S 
Sbjct: 500 TDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSV 559

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           L D+EDEEK + +  HSEKLA+ +G+    K S IRIVKNLRVC DCH  +KL+SKVY  
Sbjct: 560 LHDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYGL 619

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EIV+RDR+RFH +K G CSC+DYW
Sbjct: 620 EIVVRDRSRFHSFKTGSCSCRDYW 643



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 131/503 (26%), Positives = 231/503 (45%), Gaps = 108/503 (21%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
           S+ +++C SL ++KQ HA + K      +   +  KLLL S     + P +L YA  +F 
Sbjct: 9   SSLLTNCRSLKNLKQVHAYVCKTGLD--TDPIIAGKLLLHS---AVSVPDALDYARRLFL 63

Query: 76  QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT--IDRFSFPPILKAIARAEGL 133
             P P   + N  IR ++ S  P+++L  F++M    LT  +D FSF  +LKA A    L
Sbjct: 64  HFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRR-LTAPLDSFSFAFLLKAAASYRSL 122

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR--------------------- 172
             G+Q+H      G  +  FV T LV MY  CG +  A+                     
Sbjct: 123 ESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTAC 182

Query: 173 ----------LMFDKMSYRDIVPWSVMIDGYFQ--------------------------- 195
                     +MF++M +R++  W+VM+ GY +                           
Sbjct: 183 FRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIV 242

Query: 196 ----NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
               NG F E    F E++   + P+E+ L+  LSAC+ AG + +G+ +H FI  +    
Sbjct: 243 GFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLW 302

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS-TAMVSGYSRAGQVEDARLIFDQM 310
              + + L+  Y+ CG + MA+ +F+++  K  +VS T+M++G +               
Sbjct: 303 MVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLA--------------- 347

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
                      + GY E     EA++LF+EM+  G++PD +  +S++ AC+H G++++  
Sbjct: 348 -----------MHGYGE-----EAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGY 391

Query: 371 RIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFA 427
             + Y  K+ +  +  + +   ++D+Y + G L+ A E    M      I W +++ A +
Sbjct: 392 E-YFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACS 450

Query: 428 IHGDARNALIFFNKMKDESIDPN 450
           IHG+ + A     ++ +  +DPN
Sbjct: 451 IHGNVKLAERVKERLSE--LDPN 471


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/717 (35%), Positives = 395/717 (55%), Gaps = 39/717 (5%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           PTK   +    A +S  SL    + H QIL+       +  + +   L +         S
Sbjct: 103 PTKVTYVAILNACASTESLKDGMEIHGQILQQGF----EGDVFVGTALINM---YNKCGS 155

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           +  A   F ++           I A     +   A  ++ +M  +G+  ++ +   +  A
Sbjct: 156 VRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNA 215

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
                 L EG  V+GL +     SD  V    V M+G  G + DAR +F+ M  RD+V W
Sbjct: 216 YGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTW 275

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           +++I  Y QN  F E + LF  ++   V+ +++    +L+  +   +L+ G+ +HE + +
Sbjct: 276 NIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKE 335

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
                DA                               VV+TA++S Y R      A  I
Sbjct: 336 AGYDRDA-------------------------------VVATALMSLYGRCEAPGQAWKI 364

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F  M  KD+I W+ M   YA+N   +EAL+LF EMQ+ G +P   T+++V+  CAHL  L
Sbjct: 365 FVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAAL 424

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
            + ++IH +I +N F  ++ V  A+I+MY KCG +  A  VFE+M +R+++ W SM+ A+
Sbjct: 425 QKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAY 484

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           A HG     L  FN+M+ + +  + V+F+ VL A SH+G V +G + F +M  +++I P 
Sbjct: 485 AQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPT 544

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFA-PNVVIWGSLMAACRVHGEIELAEFAAKQL 545
            E YGC+VDL GRA  ++EA+++V  +    P+ ++W +L+ ACR H + + A+ AA+Q+
Sbjct: 545 PELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQV 604

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
           L+ DP H GA V+LSN+YA    W  V  +RK M+ RG+ KE   S IE+ N V+EFL  
Sbjct: 605 LERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEG 664

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           DRSH +   IY +L+ + SE++ AGY+PD    L D+EDE K +++ +HSE+LA+ +GLI
Sbjct: 665 DRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLI 724

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S+   + +R++KNLRVC DCH   K +SK+  REI++RD  RFH++KDG CSCKDYW
Sbjct: 725 STPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 132/529 (24%), Positives = 247/529 (46%), Gaps = 45/529 (8%)

Query: 9   KPLTLPTSTAISSCSS---LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           KP T      +  CSS   + H ++ H  +         QN+L+   L+  ++   + P 
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHV---RDRGFEQNNLVCGHLIQMYAQCGSVPE 57

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
               A  +F  +         + I           AL +F +M  E +   + ++  IL 
Sbjct: 58  ----AQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILN 113

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A A  E L +GM++HG   + GF  D FV T L+ MY  CG +  A   F ++ +RD+V 
Sbjct: 114 ACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVS 173

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ MI    Q+  F     L+  M++  V P+++ L  + +A      LS G+ V+  + 
Sbjct: 174 WTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVS 233

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
              +  D  + ++ + M+ N                               AG + DAR 
Sbjct: 234 SGVMESDVRVMNSAVNMFGN-------------------------------AGLLGDARR 262

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +F+ MV++D++ W+ +I+ Y +N +  EA++LF  +Q  G+K + +T + +++    L  
Sbjct: 263 LFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTS 322

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L + + IH  + +  +  D  V  A++ +Y +C +   A ++F  M  ++VI+WT M  A
Sbjct: 323 LAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVA 382

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT-NEYNIP 484
           +A +G  + AL  F +M+ E   P   T + VL  C+H   + +GR+I + +  N + + 
Sbjct: 383 YAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRME 442

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
              E    +++++G+   + EA+ + E M    ++++W S++ A   HG
Sbjct: 443 MVVE--TALINMYGKCGKMAEAMSVFEKMA-KRDILVWNSMLGAYAQHG 488



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 160/353 (45%), Gaps = 40/353 (11%)

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
           +PD      +L  CS A N+ +G  VH  + D     +  +   LI MYA C        
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQC-------- 52

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
                                  G V +A+ +F+ +  KD+  W+ MI  Y +      A
Sbjct: 53  -----------------------GSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRA 89

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
           L +F +MQ   + P KVT +++++ACA    L     IH  I +  F GD+ V  A+I+M
Sbjct: 90  LGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINM 149

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y KCGS+  A + F+R+  R+V+SWT+MI A   H     A   + +M+ + + PN +T 
Sbjct: 150 YNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITL 209

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
             V  A      + EG+ ++  +++   +          V++FG A LL +A  L E M 
Sbjct: 210 YTVFNAYGDPNYLSEGKFVYGLVSSGV-MESDVRVMNSAVNMFGNAGLLGDARRLFEDM- 267

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD----HDGALVLLSNIY 563
              +VV W +++    V  E    E A +   +L  D    +D   VL+ N+Y
Sbjct: 268 VDRDVVTW-NIVITLYVQNE-NFGE-AVRLFGRLQQDGVKANDITFVLMLNVY 317


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/719 (34%), Positives = 384/719 (53%), Gaps = 45/719 (6%)

Query: 9   KPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT--TT 63
           +P     S  +++C+   ++   +Q HA ++++ +          K + T+ +L      
Sbjct: 106 QPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYE---------KDVFTANALVDMYVK 156

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
              +  A  IF ++P       N  I     +     A+++ L+M + GL  + F    I
Sbjct: 157 MGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSI 216

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           LKA A A     G Q+HG   K    SD ++  GLV MY     + DA  +FD MS+RD+
Sbjct: 217 LKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDL 276

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           + W+ +I G    G  DE  ++F  ++   +  +   L+ +L + +     S    VH  
Sbjct: 277 ILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHAL 336

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
                   DAH+ + LI  Y  C C+                                DA
Sbjct: 337 AEKIGFIFDAHVVNGLIDSYWKCSCL-------------------------------SDA 365

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
             +F++    D+I  ++MI+  ++ +H + A+KLF EM   G++PD   + S+++ACA L
Sbjct: 366 IRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASL 425

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
              +Q +++H ++ K  F  D    NA++  YAKCGS+E A   F  +  R V+SW++MI
Sbjct: 426 SAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMI 485

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
              A HG  + AL  F +M DE I+PN +T   VL AC+HAGLVDE +  F SM   + I
Sbjct: 486 GGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGI 545

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
               EHY CM+DL GRA  L +A+ELV +MPF  N  +WG+L+ A RVH + EL + AA+
Sbjct: 546 DRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAE 605

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
           +L  L+P+  G  VLL+N YA    W +V ++RK MK+  I KE A S +E+ ++V+ F+
Sbjct: 606 KLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFI 665

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYG 663
             D+SH  T +IY KL+E+   +  AGY+P++   L DL+  EK  ++  HSE+LA+ + 
Sbjct: 666 VGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFA 725

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           L+S+   + IR+ KNLR+C DCH   K +S + +REI+IRD  RFHH++DG CSC DYW
Sbjct: 726 LLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 205/446 (45%), Gaps = 37/446 (8%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           M  EG+  + F+ P +LK +  A+    G QVH +    GFGSD FV   LV MYG  G 
Sbjct: 1   MRAEGVCCNEFALPVVLKCVPDAQ---LGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 168 ILDARLMFDKM-SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS 226
           + DAR +FD+  S R+ V W+ ++  Y +N    + + +F EM  S ++P E   S +++
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV 286
           AC+ + N+  G  VH  ++      D    + L+ MY   G +D+A  +F+K        
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEK-------- 169

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346
                                  M + D++ W+A+ISG   N H   A++L  +M+  G+
Sbjct: 170 -----------------------MPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGL 206

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE 406
            P+   + S++ ACA  G  D  ++IH ++ K     D  +   ++DMYAK   L+ A +
Sbjct: 207 VPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMK 266

Query: 407 VFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL 466
           VF+ M  R++I W ++I+  +  G    A   F  ++ E +  N  T   VL + +    
Sbjct: 267 VFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEA 326

Query: 467 VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLM 526
               R++ A +  +            ++D + + + L +A+ + E       + +   + 
Sbjct: 327 ASATRQVHA-LAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMIT 385

Query: 527 AACRV-HGEIELAEFAAKQLLQLDPD 551
           A  +  HGE  +  F       L+PD
Sbjct: 386 ALSQCDHGEGAIKLFMEMLRKGLEPD 411


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/585 (39%), Positives = 341/585 (58%), Gaps = 31/585 (5%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           Q+H    K+   SD FV  GLV MY  C  + DAR+ F+ +  +D++ W+ +I GY Q  
Sbjct: 353 QLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYW 412

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
              E L+LF EM    +  ++  LS IL + +    +     VH   + +    D ++ +
Sbjct: 413 EDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVN 472

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
           +LI  Y  C                                 VEDA  IF++    DL+ 
Sbjct: 473 SLIDSYGKCS-------------------------------HVEDAERIFEECTIGDLVS 501

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           +++MI+ YA+    +EALKLF EMQ   +KPD+    S+++ACA+L   +Q +++H++I 
Sbjct: 502 FTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL 561

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           K  F  D+   N++++MYAKCGS++ A   F  +  R ++SW++MI   A HG  R AL 
Sbjct: 562 KYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQ 621

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            FN+M  E + PN +T + VL AC+HAGLV E +  F SM   +   P  EHY CM+DL 
Sbjct: 622 LFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLL 681

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557
           GRA  + EA+ELV  MPF  N  +WG+L+ A R+H ++EL   AA+ L  L+P+  G  V
Sbjct: 682 GRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHV 741

Query: 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYE 617
           LL+NIYA   +W++V E+R+ M++  + KE   S IE+ ++VY FL  DRSH ++ +IY 
Sbjct: 742 LLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYA 801

Query: 618 KLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVK 677
           KL+E+   +  AGYVP +   L D+E  EK  ++  HSEKLA+ +GLI++ + + IR+ K
Sbjct: 802 KLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKK 861

Query: 678 NLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           NLRVC DCH   K + K+ +REI++RD  RFHH+KDG CSC DYW
Sbjct: 862 NLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 164/604 (27%), Positives = 279/604 (46%), Gaps = 83/604 (13%)

Query: 10  PLTLPTSTAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P ++  S  +S C +   ++   Q HA I K   S  S +  +   L+  +S        
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITK---SGLSDDPSIRNHLINLYS----KCRX 106

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
             YA  +  +   P     +  I   + +     AL  F +M   G+  + F+F  +LKA
Sbjct: 107 FGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKA 166

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            +  + L  G QVHG+    GF  D FV   LV MY  C + LD++ +FD++  R++V W
Sbjct: 167 CSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSW 226

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +   Y Q     E + LF EM +S ++P+E  LS +++AC+   + S G+ +H ++I 
Sbjct: 227 NALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIK 286

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKV--------------------------- 279
                D    + L+ MYA  G +  A  +F+K+                           
Sbjct: 287 LGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALEL 346

Query: 280 -----------LLK-----NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
                      L+K     +L VS  +V  YS+   +EDAR+ F+ + EKDLI W+A+IS
Sbjct: 347 LGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIIS 406

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           GY++     EAL LF EM   G+  ++ T+ +++ + A L V+   +++H    K+ F  
Sbjct: 407 GYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHS 466

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
           D+ V N++ID Y KC  +E A  +FE     +++S+TSMI A+A +G    AL  F +M+
Sbjct: 467 DIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQ 526

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
           D  + P+      +L AC++    ++G+++   +            YG ++D+F   +L+
Sbjct: 527 DMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK----------YGFVLDIFAGNSLV 576

Query: 504 -------------REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ--L 548
                        R   EL E       +V W +++     HG    A     Q+L+  +
Sbjct: 577 NMYAKCGSIDDAGRAFSELTER-----GIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGV 631

Query: 549 DPDH 552
            P+H
Sbjct: 632 SPNH 635



 Score =  176 bits (446), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 212/452 (46%), Gaps = 68/452 (15%)

Query: 81  PSRVSNKFIRAI-SWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLEGMQ 138
           P + + K I+ +  +S  P+      L ++++G  T    S+  +L      + L  G+Q
Sbjct: 20  PFKPAPKLIQTVPQFSEDPQ--TTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQ 77

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H   TK G   DP ++  L+ +Y  C     AR + D+ S  D+V WS +I GY QNGL
Sbjct: 78  IHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGL 137

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
               L  F EM +  V+ +E   S +L ACS   +L  G+ VH  ++ +    D  + +T
Sbjct: 138 GGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANT 197

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           L+ MYA C     +K LFD++                                E++++ W
Sbjct: 198 LVVMYAKCDEFLDSKRLFDEI-------------------------------PERNVVSW 226

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +A+ S Y + +   EA+ LF EM + G+KP++ ++ S+++AC  L    + + IH Y+ K
Sbjct: 227 NALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIK 286

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
             +  D    NA++DMYAK G L  A  VFE++++ +++SW ++I    +H     AL  
Sbjct: 287 LGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALEL 346

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGL--VDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             +MK +                 H+ L  +D   ++F S+               +VD+
Sbjct: 347 LGQMKRQ----------------LHSSLMKMDMESDLFVSVG--------------LVDM 376

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           + + +LL +A      +P   +++ W ++++ 
Sbjct: 377 YSKCDLLEDARMAFNLLP-EKDLIAWNAIISG 407



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/443 (26%), Positives = 203/443 (45%), Gaps = 49/443 (11%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           +S   +  +P  +  +  I+ C    H +Q    + ++    HS    L+K+ + S    
Sbjct: 313 ISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSS---LMKMDMESDLFV 369

Query: 61  TTTPSSLYYALSI-------FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGL 113
           +     +Y    +       F+ +P       N  I   S       AL +F++M  EG+
Sbjct: 370 SVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGI 429

Query: 114 TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
             ++ +   ILK+ A  + +    QVHGL  K GF SD +V   L+  YG C  + DA  
Sbjct: 430 GFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAER 489

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +F++ +  D+V ++ MI  Y Q G  +E L LF EM+   ++PD  V S +L+AC+    
Sbjct: 490 IFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSA 549

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
              G+ +H  I+     LD    ++L+ MYA CG +D A   F ++  + +V  +AM+ G
Sbjct: 550 FEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGG 609

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
            ++ G                               H ++AL+LFN+M   G+ P+ +T+
Sbjct: 610 LAQHG-------------------------------HGRQALQLFNQMLKEGVSPNHITL 638

Query: 354 LSVISACAHLGVLDQAQRIHLYID--KNAFGGDLRVNN--AIIDMYAKCGSLESAREVFE 409
           +SV+ AC H G++ +A+   LY +  +  FG      +   +ID+  + G +  A E+  
Sbjct: 639 VSVLGACNHAGLVTEAK---LYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVN 695

Query: 410 RMR-RRNVISWTSMINAFAIHGD 431
           +M    N   W +++ A  IH D
Sbjct: 696 KMPFEANASVWGALLGAARIHKD 718


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/719 (34%), Positives = 384/719 (53%), Gaps = 45/719 (6%)

Query: 9   KPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT--TT 63
           +P     S  +++C+   ++   +Q HA ++++ +          K + T+ +L      
Sbjct: 199 QPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYE---------KDVFTANALVDMYVK 249

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
              +  A  IF ++P       N  I     +     A+++ L+M + GL  + F    I
Sbjct: 250 MGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSI 309

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           LKA A A     G Q+HG   K    SD ++  GLV MY     + DA  +FD MS+RD+
Sbjct: 310 LKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDL 369

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           + W+ +I G    G  DE  ++F  ++   +  +   L+ +L + +     S    VH  
Sbjct: 370 ILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHAL 429

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
                   DAH+ + LI  Y  C C+                                DA
Sbjct: 430 AEKIGFIFDAHVVNGLIDSYWKCSCL-------------------------------SDA 458

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
             +F++    D+I  ++MI+  ++ +H + A+KLF EM   G++PD   + S+++ACA L
Sbjct: 459 IRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASL 518

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
              +Q +++H ++ K  F  D    NA++  YAKCGS+E A   F  +  R V+SW++MI
Sbjct: 519 SAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMI 578

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
              A HG  + AL  F +M DE I+PN +T   VL AC+HAGLVDE +  F SM   + I
Sbjct: 579 GGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGI 638

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
               EHY CM+DL GRA  L +A+ELV +MPF  N  +WG+L+ A RVH + EL + AA+
Sbjct: 639 DRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAE 698

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
           +L  L+P+  G  VLL+N YA    W +V ++RK MK+  I KE A S +E+ ++V+ F+
Sbjct: 699 KLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFI 758

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYG 663
             D+SH  T +IY KL+E+   +  AGY+P++   L DL+  EK  ++  HSE+LA+ + 
Sbjct: 759 VGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFA 818

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           L+S+   + IR+ KNLR+C DCH   K +S + +REI+IRD  RFHH++DG CSC DYW
Sbjct: 819 LLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 128/484 (26%), Positives = 223/484 (46%), Gaps = 37/484 (7%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F +IP P     +  + A S +  P+ A++ F  M  EG+  + F+ P +LK +  
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM-SYRDIVPWSV 188
           A+    G QVH +    GFGSD FV   LV MYG  G + DAR +FD+  S R+ V W+ 
Sbjct: 116 AQ---LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNG 172

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           ++  Y +N    + + +F EM  S ++P E   S +++AC+ + N+  G  VH  ++   
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMG 232

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D    + L+ MY   G +D+A  +F+K                              
Sbjct: 233 YEKDVFTANALVDMYVKMGRVDIASVIFEK------------------------------ 262

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
            M + D++ W+A+ISG   N H   A++L  +M+  G+ P+   + S++ ACA  G  D 
Sbjct: 263 -MPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDL 321

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            ++IH ++ K     D  +   ++DMYAK   L+ A +VF+ M  R++I W ++I+  + 
Sbjct: 322 GRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSH 381

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
            G    A   F  ++ E +  N  T   VL + +        R++ A +  +        
Sbjct: 382 GGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHA-LAEKIGFIFDAH 440

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV-HGEIELAEFAAKQLLQ 547
               ++D + + + L +A+ + E       + +   + A  +  HGE  +  F       
Sbjct: 441 VVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKG 500

Query: 548 LDPD 551
           L+PD
Sbjct: 501 LEPD 504



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 189/411 (45%), Gaps = 40/411 (9%)

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L   A A+ LL G  +H    K GF +   ++  L+  Y  C +   AR +FD++     
Sbjct: 11  LTRYAAAQALLPGAHLHANLLKSGFLAS--LRNHLISFYSKCRRPCCARRVFDEIPDPCH 68

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           V WS ++  Y  NGL    +  F  M+   V  +E  L  +L     A     G  VH  
Sbjct: 69  VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDA---QLGAQVHAM 125

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
            +      D  + + L+ MY   G MD                               DA
Sbjct: 126 AMATGFGSDVFVANALVAMYGGFGFMD-------------------------------DA 154

Query: 304 RLIFDQM-VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           R +FD+   E++ + W+ ++S Y +N+   +A+++F EM   G++P +     V++AC  
Sbjct: 155 RRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTG 214

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
              +D  +++H  + +  +  D+   NA++DMY K G ++ A  +FE+M   +V+SW ++
Sbjct: 215 SRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNAL 274

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I+   ++G    A+    +MK   + PN      +L AC+ AG  D GR+I   M     
Sbjct: 275 ISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANA 334

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
               Y   G +VD++ + + L +A+++ + M    ++++W +L++ C  HG
Sbjct: 335 DSDDYIGVG-LVDMYAKNHFLDDAMKVFDWMSH-RDLILWNALISGCS-HG 382


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/540 (40%), Positives = 339/540 (62%), Gaps = 26/540 (4%)

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ +I  Y +       LN++ +++  + E D  +   +L AC +      G+ +H F++
Sbjct: 127 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 186

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV----VSTAMVSGYSRAGQVE 301
              +  D  + + L+ MY  C C++ A+ +FDK++ +++V     +TA++  Y++ G + 
Sbjct: 187 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLG 246

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
            AR +F+ + +K ++ W+AMI+G   +N  +E  KLF  MQ   + P+++TML+      
Sbjct: 247 LARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLN------ 300

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
                   +R+ +         D  +N A++DMYAKCG + +A  +F     R++  W +
Sbjct: 301 -------KERVEV---------DCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNA 344

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           +I  FA+HG    AL  F +M+ + + PN +TFIG+L+ACSHAGLV EG+++F  M + +
Sbjct: 345 IITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTF 404

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
            + P+ EHYGCMVDL GRA LL EA E++++MP  PN ++WG+L+AACR+H   +L E A
Sbjct: 405 GLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELA 464

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
           A QLL+++P++ G  VL+SNIYA   RW D   +RK+MK  G+ KE   S IE+N  V+E
Sbjct: 465 ATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHE 524

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           FL  D+SH Q  +I E L E+  +L  AGYVPD  + L+++++EEK   + +HSEKLA+ 
Sbjct: 525 FLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMA 584

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           +GLIS+   + IRIVKNLRVC DCH   KL+SK+Y R I++RDR RFHH+++G CSC DY
Sbjct: 585 FGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 209/453 (46%), Gaps = 81/453 (17%)

Query: 2   STLS-QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           STL   PT   T PTS +    S+L   KQ HA I+K +H HH+     L++ L  F   
Sbjct: 67  STLKFNPTPLQTPPTSPSQHDLSTLEQTKQIHAHIIK-THFHHA-----LQIPLNDF--- 117

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
              PS L             PS   N  I + +  ++P++AL V+ ++      +D F  
Sbjct: 118 ---PSGL------------SPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMA 162

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
           P +LKA  +      G ++HG   K G   D FV   L+ MYG C  +  ARL+FDKM  
Sbjct: 163 PSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMME 222

Query: 181 RDIVPW----SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
           RD+V W    + ++D Y + G       LF  +    V    +  + +++ C R+  L  
Sbjct: 223 RDVVSWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTV----VSWTAMIAGCIRSNRLEE 278

Query: 237 GEAV-----HEFIIDNNVAL--------DAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           G  +      E I  N + +        D  L + L+ MYA CG ++ A  LF + + ++
Sbjct: 279 GTKLFIRMQEENIFPNEITMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRD 338

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           + +  A+++G++                          + GY E     EAL +F EM+ 
Sbjct: 339 ICMWNAIITGFA--------------------------MHGYGE-----EALDIFAEMER 367

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSL 401
            G+KP+ +T + ++ AC+H G++ + +++   +  + FG   ++ +   ++D+  + G L
Sbjct: 368 QGVKPNDITFIGLLHACSHAGLVTEGKKLFEKM-VHTFGLVPQIEHYGCMVDLLGRAGLL 426

Query: 402 ESAREVFERMR-RRNVISWTSMINAFAIHGDAR 433
           + A E+ + M  + N I W +++ A  +H + +
Sbjct: 427 DEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQ 459


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/557 (41%), Positives = 341/557 (61%), Gaps = 5/557 (0%)

Query: 171 ARLMFDKMSYRDIVPWSVMID--GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228
           A ++FD     D+  ++ +I    +      D        ++   + P++   +     C
Sbjct: 53  AHMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGC 112

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
                +  GE V    I   +  +  + + LI MY N   +  A+ +FD    +++    
Sbjct: 113 GSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWN 172

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
            M+SGY+R G++++AR +FD+M EKD++ W+ MISG  +  +  EAL +F+ M   GM P
Sbjct: 173 IMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSP 232

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
           ++ T+ S ++ACA+L  LDQ + +H+YI KN    + R+   +IDMYAKCG LE A ++F
Sbjct: 233 NEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLF 292

Query: 409 ERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL 466
               R  R V  W +MI  FA+HG ++ A+  F +MK E + PN VTF+ +L ACSH   
Sbjct: 293 NSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNR 352

Query: 467 VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLM 526
           V+EGR  F SM + Y + P+ EHYGC+VDL GRA  L+EA E++ +M   P+V IWG+L+
Sbjct: 353 VEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALL 412

Query: 527 AACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILK 586
           +AC++H + E+ E   K + +LDP+H G  VLL+NIY+    W +   LR+ + E G  K
Sbjct: 413 SACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKK 472

Query: 587 ERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEE 646
              CS IE+N   ++FL  DRSH QT Q+Y  L+E+I++LK AGY+P+    L+D++D E
Sbjct: 473 TPGCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNE 532

Query: 647 KREV-ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDR 705
            RE  +L HSEKLA+ +GL+++   + IRIVKNLRVC DCH  IK +SKVY REI++RDR
Sbjct: 533 DRETALLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDR 592

Query: 706 TRFHHYKDGVCSCKDYW 722
            R+HH+KDG CSC DYW
Sbjct: 593 IRYHHFKDGTCSCNDYW 609



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 208/472 (44%), Gaps = 82/472 (17%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           +SSC S   +KQ HA+++      H   +  L   L+S   P +      YA  +F   P
Sbjct: 8   LSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPIS------YAHMVFDHFP 61

Query: 79  APPSRVSNKFIRAISWSHRPK-HALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLEG 136
            P   + N  I+ +++S      +   F  ++ E  L  +++SF    K      G+LEG
Sbjct: 62  QPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEG 121

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
            QV     KLG  ++ FV   L+GMY     ++DAR +FD    RD+  W++M+ GY + 
Sbjct: 122 EQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARL 181

Query: 197 GLFDEVLNLFEEMKMSNV-------------------------------EPDEMVLSKIL 225
           G  DE   LF+EM   +V                                P+E  L+  L
Sbjct: 182 GKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSL 241

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK--VLLKN 283
           +AC+    L  G  +H +I  NN+ ++  L + LI MYA CG ++ A  LF+    L + 
Sbjct: 242 AACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRK 301

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           +    AM+ G++  G+                                +EA+++F +M++
Sbjct: 302 VWPWNAMIGGFAVHGK-------------------------------SKEAIEVFEQMKI 330

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA----FGGDLRVNNAIIDMYAKCG 399
             + P+KVT +++++AC+H   +++ +    Y +  A       +L     ++D+  + G
Sbjct: 331 EKVSPNKVTFVALLNACSHGNRVEEGR---YYFESMASHYRVKPELEHYGCLVDLLGRAG 387

Query: 400 SLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
            L+ A E+   M    +V  W ++++A  IH DA         +K+  +DPN
Sbjct: 388 RLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKE--LDPN 437


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/654 (35%), Positives = 377/654 (57%), Gaps = 43/654 (6%)

Query: 79  APPSRVSNKFIRAISWSHRPK--------HALKVFLKMLNEGLTIDRFSFPPILKAIARA 130
           +P SR +  F R IS+S  P            +  L+M   G  +    +  IL      
Sbjct: 18  SPVSRYT--FSRQISFSPSPNLKTLCSSGQLKEALLQMAILGREVKFEGYDSILNECVSQ 75

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
             + EG +VH    K  +    +++T L+ +Y  C  + DAR MFD+M  R++V W+ MI
Sbjct: 76  RAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMI 135

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
             Y Q G   E LNLF EM  S+ EP+    + IL++C  +     G  +H   I  N  
Sbjct: 136 SAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYE 195

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
               + S+L+ MYA                               ++G++ DA  +F  +
Sbjct: 196 SHMFVGSSLLDMYA-------------------------------KSGRICDAHGVFHCL 224

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
            E+D++  +A+ISGYA+    +EALKLF ++Q+ GM  + VT  SV++A + L  L+  +
Sbjct: 225 PERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGK 284

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
           ++H ++ ++     + + N++IDMY+KCG++  AR +F+ M  R  ISW +M+  ++ HG
Sbjct: 285 QVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHG 344

Query: 431 DARNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN-IPPKYE 488
            AR  L  F  M++E+ + P+ +T++ VL  CSH  L D G EIF +M N  + I P   
Sbjct: 345 MAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIG 404

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HYGC+VDL GRA  + EA + ++ MPF P   IWGSL+ +CRVH ++E+     ++LL+L
Sbjct: 405 HYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLEL 464

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           +P++ G  V+LSN+YA   +W+D+  +R  M+E+ + KE   S +E++  V+ F  +D +
Sbjct: 465 EPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHT 524

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
           H + +++  K+ E+  + K  GYVPD+   L D+++E+K +V+L HSEKLAL +GLI++ 
Sbjct: 525 HPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATP 584

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + + IR++KNLR+C DCH+F K VS++YAR +++RD+ RFH+   GVCSC DYW
Sbjct: 585 EGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 638



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 185/408 (45%), Gaps = 36/408 (8%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P          I A S       AL +F++ML      + F+F  IL +   
Sbjct: 116 ARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYG 175

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           + G   G Q+H +  K  + S  FV + L+ MY   G+I DA  +F  +  RD+V  + +
Sbjct: 176 SLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAI 235

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY Q GL +E L LF ++++  +  + +  + +L+A S    L++G+ VH  ++ +  
Sbjct: 236 ISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQ 295

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                L ++LI MY+ CG +  A+ +FD +  +  +   AM+ GYS+ G   +   +F  
Sbjct: 296 YSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKL 355

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M E++ +                              KPD +T L+V+S C+H  + D  
Sbjct: 356 MREENKV------------------------------KPDSITYLAVLSGCSHGQLEDMG 385

Query: 370 QRI--HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAF 426
             I  ++   K+    D+     ++D+  + G +E A +  ++M      + W S++ + 
Sbjct: 386 LEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSC 445

Query: 427 AIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEGREI 473
            +H D    +I   K+ + E  +      +  LYA   AG  ++ R I
Sbjct: 446 RVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYA--SAGKWEDMRNI 491


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/636 (37%), Positives = 365/636 (57%), Gaps = 23/636 (3%)

Query: 110 NEGLTIDRFSFPPIL--KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           N   T++    PP++  K     +   +  Q+H +  K G   DP     ++       +
Sbjct: 7   NPNRTLNFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSR 66

Query: 168 ILD-ARLMFDKMSYRDIVPWSVMIDGYFQNG---LFDEVLNLFEEMKM-SNVEPDEMVLS 222
            +D AR +F +M   +   W+ ++    +     L  E L LF  M     V+P+     
Sbjct: 67  DIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFP 126

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            +L AC+RA  L  G+ +H  I+      D  + S L+ MY  C  M+ A  LF K ++ 
Sbjct: 127 SVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVD 186

Query: 283 ----------------NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
                           N+V+   M+ G  R G ++ A+ +FD+M  + ++ W+ MISGYA
Sbjct: 187 FDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYA 246

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
           +N H  EA+ LF EMQ   + P+ VT++SV+ A A +G L+  + IHLY  KN    D  
Sbjct: 247 QNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDV 306

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
           + +A++DMY+KCGS++ A +VFE + +RN I+W+++I AFA+HG A +A+I F+ M    
Sbjct: 307 LGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG 366

Query: 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
           + PN V +IG+L ACSHAGLV+EGR  F+ M     + P+ EHYGCMVDL GRA  L EA
Sbjct: 367 VTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEA 426

Query: 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566
            EL+  MP  P+ VIW +L+ AC++H  +++ E  A+ L++L P   G+ V LSN+YA  
Sbjct: 427 EELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASL 486

Query: 567 KRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL 626
             W+ V  +R  MK   I K+  CS IE++  ++EFL  D SH +  +I   L E+  +L
Sbjct: 487 GNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKL 546

Query: 627 KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCH 686
           +  GY P+     ++ +++E+   + +HSEK+A+ +GLIS+     ++IVKNLR+CEDCH
Sbjct: 547 RSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCH 606

Query: 687 NFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             +KL+S +Y R+I++RDR RFH ++ G CSC DYW
Sbjct: 607 ASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 112/257 (43%), Gaps = 33/257 (12%)

Query: 70  ALSIFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           A ++F ++P P S VS N  I   + +     A+ +F +M +  +  +  +   +L AIA
Sbjct: 223 AKNLFDEMP-PRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIA 281

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           R   L  G  +H    K     D  + + LV MY  CG I  A  +F+ +  R+ + WS 
Sbjct: 282 RIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSA 341

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I  +  +G  ++ +  F  M  + V P+++    ILSACS AG +  G +    ++   
Sbjct: 342 IIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMV-KV 400

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA-RLIF 307
           V L   ++        + GC                     MV    RAG +E+A  LI 
Sbjct: 401 VGLQPRIE--------HYGC---------------------MVDLLGRAGHLEEAEELIR 431

Query: 308 DQMVEKDLICWSAMISG 324
           +  +E D + W A++  
Sbjct: 432 NMPIEPDDVIWKALLGA 448


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 262/734 (35%), Positives = 402/734 (54%), Gaps = 47/734 (6%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P  P   PT  ++   S L  +  T  +I     + H         LL S +   + P  
Sbjct: 2   PASPW--PTPRSVRQASQLHAILTTSGRIAHRPSAEH---------LLNSLTNCLSAPRH 50

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRA-ISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           L Y LS+F ++P P + + +  +RA +  S    H + +  +M   G+ +  F+F  + +
Sbjct: 51  LRYVLSLFDRLPHPTTFLHDTALRACLQASAGADHPVLILRRMRRGGVRMSAFTFHFVFR 110

Query: 126 --AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
             A     GL   +    L T L   +   V   L+ MY + G   DAR  FD++  +D 
Sbjct: 111 CCAAGAGAGLCRMLHAACLRTMLPSAAR-IVANPLIHMYASLGLTDDARRAFDEVPVKDA 169

Query: 184 VPWSVMIDGYFQNGLFDEVLNL-------------------------------FEEMKMS 212
           V W+ +I G  + GL DE   L                               F  M   
Sbjct: 170 VVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSD 229

Query: 213 NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
            VEPDE+ +   LSACS+  NL +G  +H  +    + +   L  TLI MYA CG +  A
Sbjct: 230 GVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQA 289

Query: 273 KGLFDKVLL-KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
           + +FD V   +       ++ GY + G V+ AR +FDQM  +D+I +++MI+GY  +   
Sbjct: 290 QAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRL 349

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           ++AL+LF +++  GM+ D  T++S+++ACA LG L Q + +H  I++     D+ +  A+
Sbjct: 350 RDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTAL 409

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           +DMY KCG ++ A  VF RM  R+V +W++MI   A +G   +AL  F +MK +   P  
Sbjct: 410 VDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTS 469

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
           VT+I VL ACSH+ L++EGR+ F  M + + + P+ EHYGCM+DL  R+ LL EA+ LV+
Sbjct: 470 VTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMHLVQ 529

Query: 512 TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
           TMP  PN VIW S+++ACRVH  I+LA  AA+ LL+L P+ D   V L NIY   ++W +
Sbjct: 530 TMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWVE 589

Query: 572 VGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY 631
              +R  M+E+G+ K    S I +  +V++F+  D+SH  T +I   + E+   LK AGY
Sbjct: 590 AKRIRMLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSHPWTLEIITMMEEIARRLKSAGY 649

Query: 632 VPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKL 691
            P      VD+++EEK + +L HSEK+A+ +GLIS   +  I I+KNLRVCEDCH+ IKL
Sbjct: 650 SPATSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPNLPIHIMKNLRVCEDCHSAIKL 709

Query: 692 VSKVYAREIVIRDR 705
           +S+++ REI++RDR
Sbjct: 710 ISQLWNREIIVRDR 723


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/626 (38%), Positives = 356/626 (56%), Gaps = 35/626 (5%)

Query: 101 ALKVFLKML-NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           A+ +FL+ML + G   DRF+   ++   A  + L  G ++H    + G   D  V   LV
Sbjct: 245 AIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLV 304

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG--LFDEVLNLFEEMKM-SNVEP 216
            MY  CG + +AR +FD M   +++ W+ +++GY + G     E + +F  M +   V P
Sbjct: 305 DMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAP 364

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           +    S +L AC+   +  +GE VH   I   + L A           +C          
Sbjct: 365 NCFTFSGVLKACASLPDFDFGEQVHGQTI--KLGLSA----------IDC---------- 402

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
                    V   +VS Y+++G++E AR  FD + EK+L+  + +     ++ +      
Sbjct: 403 ---------VGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQD 453

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           L  E++  G      T  S++S  A +G + + ++IH  + K  F  DL VNNA+I MY+
Sbjct: 454 LDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYS 513

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KCG+ E+A +VF  M   NVI+WTS+IN FA HG A  AL  F  M +  + PN VT+I 
Sbjct: 514 KCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIA 573

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           VL ACSH GL+DE  + F SM + + I P+ EHY CMVDL GR+ LL EA+E + +MPF 
Sbjct: 574 VLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFD 633

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
            + ++W + + +CRVH   +L E AAK +L+ +P      +LLSN+YA + RW+DV  +R
Sbjct: 634 ADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIR 693

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
           K+MK++ I KE   S IE+ N+V++F   D  H +  QIYEKL+E+  ++K  GYVP+  
Sbjct: 694 KNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIKNVGYVPNTD 753

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
             L D+EDE+K + +  HSEKLA+ + LIS+     IR+ KNLRVC DCH  IK +S V 
Sbjct: 754 FVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDCHTAIKYISMVS 813

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
            REIV+RD  RFHH KDG CSC DYW
Sbjct: 814 GREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 142/538 (26%), Positives = 249/538 (46%), Gaps = 71/538 (13%)

Query: 29  KQTHAQIL---KLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVS 85
           K TH   L   KL+ S+   ++LLL  L+T +S  +  P +   A SIF  +      V 
Sbjct: 66  KNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYS-KSNDPIT---AFSIFQSMENSKRDVV 121

Query: 86  N--KFIRAISWSHRPKHALKVFLKML-NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGL 142
           +    I   + +     A+++F ++L  +G+  + + F  +++A  +      G+ + G 
Sbjct: 122 SYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGF 181

Query: 143 GTKLG-FGSDPFVQTGLVGMYGACGKILD---ARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
             K G F S   V   L+ M+     + D   AR +FDKM  +++V W++MI    Q G 
Sbjct: 182 VLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGY 241

Query: 199 FDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
            DE ++LF EM +S+   PD   L+ ++S C+    LS G+ +H ++I + + LD  +  
Sbjct: 242 NDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGC 301

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
           +L+ MYA CG +  A+ +FD +   N++  TA+V+GY R G                   
Sbjct: 302 SLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGG------------------- 342

Query: 318 WSAMISGYAENNHPQEALKLFNEMQV-CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
                 GY      +EA+++F+ M +  G+ P+  T   V+ ACA L   D  +++H   
Sbjct: 343 -----GGY-----EREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQT 392

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            K        V N ++ +YAK G +ESAR+ F+ +  +N++S T +        D  N +
Sbjct: 393 IKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVV--------DDTN-V 443

Query: 437 IFFNKMKDESID------PNGV---TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
             FN   ++ +D       +GV   T+  +L   +  G + +G +I A M  +       
Sbjct: 444 KDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHA-MVVKIGFRTDL 502

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
                ++ ++ +      AL++   M    NV+ W S++     HG      FA+K L
Sbjct: 503 SVNNALISMYSKCGNKEAALQVFNDME-DCNVITWTSIINGFAKHG------FASKAL 553



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 175/384 (45%), Gaps = 47/384 (12%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
           N ++R      R   A+++F  ML +G +  + F+F  +LKA A       G QVHG   
Sbjct: 336 NGYVRGGGGYER--EAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTI 393

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           KLG  +   V  GLV +Y   G++  AR  FD +  +++V  +V+ D   ++   +   +
Sbjct: 394 KLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQD 453

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           L  E++           + +LS  +  G +  GE +H  ++      D  + + LI+MY+
Sbjct: 454 LDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYS 513

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
            CG  + A  +F+ +   N++  T++++G+++ G                          
Sbjct: 514 KCGNKEAALQVFNDMEDCNVITWTSIINGFAKHG-------------------------- 547

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
                   +AL+LF  M   G+KP+ VT ++V+SAC+H+G++D+A + H    ++  G  
Sbjct: 548 -----FASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWK-HFTSMRDNHGIV 601

Query: 385 LRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH-----GDARNAL 436
            R+ +   ++D+  + G L  A E    M    + + W + + +  +H     G+    +
Sbjct: 602 PRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKM 661

Query: 437 IFFNKMKDESIDPNGVTFIGVLYA 460
           I    ++ E  DP     +  LYA
Sbjct: 662 I----LEREPHDPATYILLSNLYA 681



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 153/312 (49%), Gaps = 39/312 (12%)

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           S +L  C R  N   G+ +H  +  +N+ LD  L ++LIT+Y+                 
Sbjct: 56  SLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSK---------------- 99

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
                S   ++ +S    +E+++        +D++ +S++IS +A N +  +A+++F+++
Sbjct: 100 -----SNDPITAFSIFQSMENSK--------RDVVSYSSIISCFANNRNCLKAVEMFDQL 146

Query: 342 QVC-GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA-FGGDLRVNNAIIDMYAKCG 399
            +  G+ P++    +VI AC   G       +  ++ K   F   + V   +IDM+ K  
Sbjct: 147 LLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGC 206

Query: 400 S---LESAREVFERMRRRNVISWTSMINAFAIHGDARNAL-IFFNKMKDESIDPNGVTFI 455
           S   LESAR+VF++MR +NV++WT MI   A +G    A+ +F   +      P+  T  
Sbjct: 207 SLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLT 266

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC-MVDLFGRANLLREALELVETMP 514
           G++  C+    +  G+E+ + +     +       GC +VD++ +  L++EA ++ + M 
Sbjct: 267 GLISVCAEIQFLSLGKELHSWVIRSGLVLDLC--VGCSLVDMYAKCGLVQEARKVFDGMR 324

Query: 515 FAPNVVIWGSLM 526
              NV+ W +L+
Sbjct: 325 -EHNVMSWTALV 335


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 263/727 (36%), Positives = 398/727 (54%), Gaps = 47/727 (6%)

Query: 10  PLTLPTSTAISSCSSLTHMKQTHAQILKLSHSH------HSQNSLLLKLLLTSFSLPTTT 63
           P  L    A+SS  +   ++ T   +LKL  +        + ++ L    + S +L  T 
Sbjct: 41  PAALAAFVAMSSAGAPPVLR-TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATA 99

Query: 64  PSSLYY-------ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTI 115
            +++Y        A  +F ++P       N  +   + +   + A+++ ++M  E G   
Sbjct: 100 LANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERP 159

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           D  +   +L A A A  L    + H    + G      V T ++  Y  CG I  AR++F
Sbjct: 160 DSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVF 219

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           D M  ++ V W+ MIDGY QNG   E L LF  M    V+  ++ +   L AC   G L 
Sbjct: 220 DWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLD 279

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G  VHE ++   + LD+                             N+ V  A+++ YS
Sbjct: 280 EGMRVHELLV--RIGLDS-----------------------------NVSVMNALITMYS 308

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           +  +V+ A  +FD++  +  + W+AMI G A+N   ++A++LF  MQ+  +KPD  T++S
Sbjct: 309 KCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVS 368

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           VI A A +    QA+ IH Y  +     D+ V  A+IDMYAKCG +  AR +F   R R+
Sbjct: 369 VIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERH 428

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           VI+W +MI+ +  HG  + A+  F +MK   I PN  TF+ VL ACSHAGLVDEGRE F 
Sbjct: 429 VITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFT 488

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           SM  +Y + P  EHYG MVDL GRA  L EA   ++ MP  P + ++G+++ AC++H  +
Sbjct: 489 SMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNV 548

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           ELAE +A+++ +L P      VLL+NIYA    W+DV  +R +M++ G+ K    S I++
Sbjct: 549 ELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQL 608

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
            NE++ F +   +H+Q  +IY +L ++I E+K  GYVPD  S + D+ED+ K +++  HS
Sbjct: 609 KNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDS-IHDVEDDVKAQLLNTHS 667

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ +GLI +   + I+I KNLRVC DCHN  KL+S V  REI++RD  RFHH+KDG 
Sbjct: 668 EKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGK 727

Query: 716 CSCKDYW 722
           CSC DYW
Sbjct: 728 CSCGDYW 734


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 263/727 (36%), Positives = 398/727 (54%), Gaps = 47/727 (6%)

Query: 10  PLTLPTSTAISSCSSLTHMKQTHAQILKLSHSH------HSQNSLLLKLLLTSFSLPTTT 63
           P  L    A+SS  +   ++ T   +LKL  +        + ++ L    + S +L  T 
Sbjct: 41  PAALAAFVAMSSAGAPPVLR-TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATA 99

Query: 64  PSSLYY-------ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTI 115
            +++Y        A  +F ++P       N  +   + +   + A+++ ++M  E G   
Sbjct: 100 LANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERP 159

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           D  +   +L A A A  L    + H    + G      V T ++  Y  CG I  AR++F
Sbjct: 160 DSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVF 219

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           D M  ++ V W+ MIDGY QNG   E L LF  M    V+  ++ +   L AC   G L 
Sbjct: 220 DWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLD 279

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G  VHE ++   + LD+                             N+ V  A+++ YS
Sbjct: 280 EGMRVHELLV--RIGLDS-----------------------------NVSVMNALITMYS 308

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           +  +V+ A  +FD++  +  + W+AMI G A+N   ++A++LF  MQ+  +KPD  T++S
Sbjct: 309 KCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVS 368

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           VI A A +    QA+ IH Y  +     D+ V  A+IDMYAKCG +  AR +F   R R+
Sbjct: 369 VIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERH 428

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           VI+W +MI+ +  HG  + A+  F +MK   I PN  TF+ VL ACSHAGLVDEGRE F 
Sbjct: 429 VITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFT 488

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           SM  +Y + P  EHYG MVDL GRA  L EA   ++ MP  P + ++G+++ AC++H  +
Sbjct: 489 SMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNV 548

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           ELAE +A+++ +L P      VLL+NIYA    W+DV  +R +M++ G+ K    S I++
Sbjct: 549 ELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQL 608

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
            NE++ F +   +H+Q  +IY +L ++I E+K  GYVPD  S + D+ED+ K +++  HS
Sbjct: 609 KNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDS-IHDVEDDVKAQLLNTHS 667

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ +GLI +   + I+I KNLRVC DCHN  KL+S V  REI++RD  RFHH+KDG 
Sbjct: 668 EKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGK 727

Query: 716 CSCKDYW 722
           CSC DYW
Sbjct: 728 CSCGDYW 734


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/692 (34%), Positives = 385/692 (55%), Gaps = 39/692 (5%)

Query: 29  KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKF 88
           K+ H  +LKL     S  +++  L+   F         +  A ++F ++  P     N  
Sbjct: 215 KRVHGYVLKLGFG--SNTAVVNSLIAAYFKF-----GGVESAHNLFDELSEPDVVSWNSM 267

Query: 89  IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148
           I     +    + L++F++ML  G+ +D  +   +L A A    L  G  +HG G K  F
Sbjct: 268 INGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACF 327

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
             +      L+ MY  CG +  A  +F KM    IV W+ +I  Y + GL+ + + LF+E
Sbjct: 328 SEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDE 387

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M+   V PD   ++ I+ AC+ + +L  G  VH ++I N +                   
Sbjct: 388 MQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG------------------ 429

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
                         NL V+ A+++ Y++ G VE+ARL+F ++  KD++ W+ MI GY++N
Sbjct: 430 -------------SNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQN 476

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
             P EAL+LF +MQ    KPD +TM  V+ ACA L  LD+ + IH +I +  +  DL V 
Sbjct: 477 LLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVA 535

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
            A++DMYAKCG L  A+ +F+ + ++++ISWT MI  + +HG    A+  FN+M+   I+
Sbjct: 536 CALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIE 595

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
           P+  +F  +L ACSH+GL++EG + F SM NE  + PK EHY C+VDL  R   L +A +
Sbjct: 596 PDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYK 655

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
            +E+MP  P+  IWG L++ CR+H +++LAE  A+ + +L+PD+    V+L+N+YA+ ++
Sbjct: 656 FIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEK 715

Query: 569 WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
           W++V +LRK M++RG  +   CS IE+  +   F+  +  H Q  +I   L+++  +++ 
Sbjct: 716 WEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQN 775

Query: 629 AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
             Y       L++ +D EK  +   HSEK A+ +G+++      +R+ KN RVC DCH  
Sbjct: 776 EDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNRRVCGDCHEM 835

Query: 689 IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
            K +SK    EIV+RD  RFHH+KDG+CSC+D
Sbjct: 836 GKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRD 867



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 206/413 (49%), Gaps = 39/413 (9%)

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           S+  +L+  A  + L +G +VH +    G   D  +   LV MY  CG ++  R +FDK+
Sbjct: 96  SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKI 155

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
               +  W++++  Y + G F E ++LF++M+   V  +    + +L   +  G +   +
Sbjct: 156 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 215

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
            VH +++                                     N  V  ++++ Y + G
Sbjct: 216 RVHGYVLKLGFG-------------------------------SNTAVVNSLIAAYFKFG 244

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
            VE A  +FD++ E D++ W++MI+G   N      L++F +M + G++ D  T++SV+ 
Sbjct: 245 GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLV 304

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           ACA++G L   + +H +  K  F  ++  +N ++DMY+KCG+L  A EVF +M    ++S
Sbjct: 305 ACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVS 364

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           WTS+I A+   G   +A+  F++M+ + + P+  T   +++AC+ +  +D+GR++ + + 
Sbjct: 365 WTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVI 424

Query: 479 NE---YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
                 N+P        +++++ +   + EA  +   +P   ++V W +++  
Sbjct: 425 KNGMGSNLPVT----NALINMYAKCGSVEEARLVFSKIP-VKDIVSWNTMIGG 472



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 20/188 (10%)

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           SV+  CA    L+  +R+H  I  N    D  +   ++ MY  CG L   R++F+++   
Sbjct: 99  SVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 158

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI- 473
            V  W  +++ +A  G+ R ++  F KM+   +  N  TF  VL   +  G V E + + 
Sbjct: 159 KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVH 218

Query: 474 -------FASMTNEYN-IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
                  F S T   N +   Y  +G    +    NL  E  E        P+VV W S+
Sbjct: 219 GYVLKLGFGSNTAVVNSLIAAYFKFG---GVESAHNLFDELSE--------PDVVSWNSM 267

Query: 526 MAACRVHG 533
           +  C V+G
Sbjct: 268 INGCVVNG 275


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/608 (37%), Positives = 363/608 (59%), Gaps = 36/608 (5%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D F    ++ +Y   G + D R++FD M  RD V ++ +I G+  NG     L +F  M+
Sbjct: 88  DNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQ 147

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
              ++P E     +L+AC++  +L  G+ +H  II  N+  +  + + L  +YA CG +D
Sbjct: 148 KEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEID 207

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSR---------------------------------- 296
            A+ LFD+++++N+V    M+SGY +                                  
Sbjct: 208 QARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYI 267

Query: 297 -AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
            AG +++AR +F ++ EKD +CW+ MI G A+N   ++AL LF+EM +   +PD  T+ S
Sbjct: 268 QAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISS 327

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           V+S+CA L  L   Q +H          DL V++A++DMY KCG    A  +F  M+ RN
Sbjct: 328 VVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRN 387

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V+SW SMI  +A++G    AL  +  M +E++ P+ VTF+GVL AC HAGLV+EG+E F 
Sbjct: 388 VVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFC 447

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           SM++++ + P  +HY CMV+LFGR+  + +A++L+ +M   PN +IW ++++ C + G+I
Sbjct: 448 SMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDI 507

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           +  E AA+ L++L+P +    ++LSN+YA   RW+DV  +R  MK + + K  A S IE+
Sbjct: 508 KHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEI 567

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
           +NEV++F+  DR+H     I+ +LN +I +L+ AG+ P+ +  L D  ++EK E I +HS
Sbjct: 568 DNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQEAGFSPNTNLVLHDFGEDEKLESINYHS 627

Query: 656 EKLALCYGLISSKKD-SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDG 714
           EKLAL YGLI      + IRI+KN+R C DCH F+K VS +  R +++RD  RFHH+ +G
Sbjct: 628 EKLALAYGLIKKPHGVTPIRIIKNIRTCADCHIFMKFVSNITRRPVILRDSNRFHHFVEG 687

Query: 715 VCSCKDYW 722
            CSCKDYW
Sbjct: 688 KCSCKDYW 695



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 193/400 (48%), Gaps = 37/400 (9%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           IF  +P+  S   N  I   + + R   AL VFL+M  EGL    ++   +L A  +   
Sbjct: 111 IFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLD 170

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L  G Q+HG       G + FV   L  +Y  CG+I  AR +FD+M  R++V W++MI G
Sbjct: 171 LRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISG 230

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN----- 247
           Y +N   ++ ++LF EM++SN++PD++  S +L A  +AG +     V   I +      
Sbjct: 231 YLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCW 290

Query: 248 --------------------------NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
                                     N   D +  S++++  A    +   + +  K  L
Sbjct: 291 TIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFL 350

Query: 282 ----KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                +L+VS+A+V  Y + G   DA  IF  M  ++++ W++MI GYA N    EAL L
Sbjct: 351 MGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSL 410

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI-DKNAFGGDLRVNNAIIDMYA 396
           +  M    +KPD VT + V+SAC H G++++ +     + D++           +++++ 
Sbjct: 411 YENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFG 470

Query: 397 KCGSLESAREVFERMRRR-NVISWTSMINAFAIHGDARNA 435
           + G ++ A ++   M +  N + WT++++   + GD ++ 
Sbjct: 471 RSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHG 510



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 136/226 (60%)

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           D  + + L+ +YA  G +  A+ LFD++  ++     AM+S Y+++G VED R+IFD M 
Sbjct: 57  DTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMP 116

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
            +D + ++ +ISG+A N     AL +F  MQ  G+KP + T +SV++AC  L  L + ++
Sbjct: 117 SRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQ 176

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           IH  I     GG++ V NA+ D+YA+CG ++ AR +F+RM  RNV++W  MI+ +  +  
Sbjct: 177 IHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQ 236

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
               +  F++M+  ++ P+ VT   VL A   AG +DE R++F  +
Sbjct: 237 PEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEI 282


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/654 (35%), Positives = 378/654 (57%), Gaps = 43/654 (6%)

Query: 79  APPSRVSNKFIRAISWSHRPK--------HALKVFLKMLNEGLTIDRFSFPPILKAIARA 130
           +P SR +  F R IS+S  P            +  L+M   G  +    +  IL      
Sbjct: 46  SPVSRYT--FSRQISFSPSPNLKTLCSSGQLKEALLQMAILGREVKFEGYDTILNECVSQ 103

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
             + EG +VH    K  +    +++T L+ +Y  C  + DAR MFD+M  +++V W+ MI
Sbjct: 104 RAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMI 163

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
             Y Q G   E LNLF EM  S+ EP+    + IL++C  +     G  +H   I  N  
Sbjct: 164 SAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYE 223

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
               + S+L+ MYA                               ++G++ DA  +F  +
Sbjct: 224 SHMFVGSSLLDMYA-------------------------------KSGRICDAHGVFHCL 252

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
            E+D++  +A+ISGYA+    +EALKLF ++Q+ GM  + VT  SV++A + L  L+  +
Sbjct: 253 PERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGK 312

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
           ++H ++ ++     + + N++IDMY+KCG++  AR +F+ M  R  ISW +M+  ++ HG
Sbjct: 313 QVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHG 372

Query: 431 DARNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN-IPPKYE 488
            AR  L  F  M++E+ + P+ +T++ VL  CSH  L D G EIF +M N  + I P   
Sbjct: 373 MAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIG 432

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HYGC+VDL GRA  + EA + ++ MPF P   IWGSL+ +CRVH ++E+     ++LL+L
Sbjct: 433 HYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLEL 492

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           +P++ G  V+LSN+YA   +W+D+  +R  M+E+ + KE   S +E++  V+ F  +D +
Sbjct: 493 EPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHT 552

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
           H + +++ +K+ E+  + K  GYVPD+   L D+++E+K +V+L HSEKLAL +GLI++ 
Sbjct: 553 HPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATP 612

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + + IR++KNLR+C DCH+F K VS++YAR +++RD+ RFH+   GVCSC DYW
Sbjct: 613 EGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 185/408 (45%), Gaps = 36/408 (8%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P          I A S       AL +F++ML      + F+F  IL +   
Sbjct: 144 AREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYG 203

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           + G   G Q+H +  K  + S  FV + L+ MY   G+I DA  +F  +  RD+V  + +
Sbjct: 204 SLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAI 263

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY Q GL +E L LF ++++  +  + +  + +L+A S    L++G+ VH  ++ +  
Sbjct: 264 ISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQ 323

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                L ++LI MY+ CG +  A+ +FD +  +  +   AM+ GYS+ G   +   +F  
Sbjct: 324 YSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKL 383

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M E++ +                              KPD +T L+V+S C+H  + D  
Sbjct: 384 MREENKV------------------------------KPDSITYLAVLSGCSHGQLEDMG 413

Query: 370 QRI--HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAF 426
             I  ++   K+    D+     ++D+  + G +E A +  ++M      + W S++ + 
Sbjct: 414 LEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSC 473

Query: 427 AIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEGREI 473
            +H D    +I   K+ + E  +      +  LYA   AG  ++ R I
Sbjct: 474 RVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYA--SAGKWEDMRNI 519


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/615 (38%), Positives = 344/615 (55%), Gaps = 39/615 (6%)

Query: 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLF 206
           G   D FV + L+  Y   G   DAR + D M +R +V WS +I  +  +G  +    L 
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 207 EEMKMSNVEP-----------------------------------DEMVLSKILSACSRA 231
           E M+   VEP                                   D   +S  LSA    
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDV 169

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
           G+++ GE +H +++     LDA + + LI MY  CG  D    +FD+    ++    A+V
Sbjct: 170 GDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALV 229

Query: 292 SGYSRAGQVEDARLIFDQMV----EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           +G SR  QV +A  +F + V    E +++ W+++++   +N    EA+ LF EMQ  G++
Sbjct: 230 AGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIE 289

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           P+ VT+  V+ A A++  L   +  H +  +  F  D+ V +A++DMYAKCG +  AR +
Sbjct: 290 PNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMI 349

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           FE M  RNV+SW +MI  +A+HG+A NA+  F  M+     P+ VTF  VL ACS AG  
Sbjct: 350 FEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWT 409

Query: 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
           +EGR  F  M +++ I P+ EHY CMV L GRA  L +A +++  MPF P+  IWGSL+ 
Sbjct: 410 EEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLG 469

Query: 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587
           +CRVHG + LAE AA+ L QL+P++ G  VLLSNIYA  K W  V  LR  MK  G+ KE
Sbjct: 470 SCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKE 529

Query: 588 RACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEK 647
           + CS IE+ N+V+  L  D SH     I EKL  +  E++  G+ P     L D+E++EK
Sbjct: 530 KGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEK 589

Query: 648 REVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTR 707
            +++  HSEKLA+  GLIS+   + ++++KNLR+C DCH  +K +S    REI +RD  R
Sbjct: 590 DDILSVHSEKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNR 649

Query: 708 FHHYKDGVCSCKDYW 722
           FHH+KDG CSC DYW
Sbjct: 650 FHHFKDGKCSCADYW 664



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 158/383 (41%), Gaps = 68/383 (17%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  +  ++ S R + A+   ++M  EG   D       L A+     +  G Q+HG   K
Sbjct: 125 NGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVK 184

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD----------------------- 182
            G   D  V T L+ MYG CG+  +   +FD+ S+ D                       
Sbjct: 185 AGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRL 244

Query: 183 ------------IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
                       +V W+ ++    QNG   E ++LF EM+   +EP+ + +  +L A + 
Sbjct: 245 FREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFAN 304

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
              L +G + H F +      D ++ S L+ MYA CG +  A+ +F+ +  +N+V   AM
Sbjct: 305 IAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAM 364

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           + GY+  G+ E+                               A++LF  MQ    KPD 
Sbjct: 365 IGGYAMHGEAEN-------------------------------AVRLFRSMQSSKEKPDL 393

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYID-KNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           VT   V+ AC+  G  ++ +     +  K+     +     ++ +  + G L+ A ++  
Sbjct: 394 VTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIIN 453

Query: 410 RMR-RRNVISWTSMINAFAIHGD 431
           +M    +   W S++ +  +HG+
Sbjct: 454 QMPFEPDGCIWGSLLGSCRVHGN 476



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 171/395 (43%), Gaps = 57/395 (14%)

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
           VLN    +      PD  +L   L +CS         A+H       V+ DA + S+L+ 
Sbjct: 10  VLNFLRHVSFP---PDPRLLPSALKSCSALRLAR---ALHAAAAVAGVSRDAFVASSLLH 63

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM----VEKDLIC 317
            Y   G    A+ + D +  + +V  +A+++ ++  G  E A  + ++M    VE ++I 
Sbjct: 64  AYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVIT 123

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W+ ++SG   +   ++A+     M   G  PD   +   +SA   +G +   +++H Y+ 
Sbjct: 124 WNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVV 183

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFE---------------------------R 410
           K     D  V  A+IDMY KCG  +    VF+                           R
Sbjct: 184 KAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALR 243

Query: 411 MRRR--------NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
           + R         NV+SWTS++     +G    A+  F +M+ E I+PN VT   VL A +
Sbjct: 244 LFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFA 303

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEH----YGCMVDLFGRANLLREALELVETMPFAPN 518
           +   +  GR         +++   + H       +VD++ +   +R+A  + E MP+  N
Sbjct: 304 NIAALMHGRSAHC-----FSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYR-N 357

Query: 519 VVIWGSLMAACRVHGEIELAE--FAAKQLLQLDPD 551
           VV W +++    +HGE E A   F + Q  +  PD
Sbjct: 358 VVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPD 392


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/568 (39%), Positives = 354/568 (62%), Gaps = 8/568 (1%)

Query: 155 QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV 214
            T L G     GK+ +A  +FDK+   D V +++M+  Y ++   +  L  F +M + ++
Sbjct: 108 NTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDI 167

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
                  + ++S  ++ G +     +   + + N        S +I+ Y   G ++ A+ 
Sbjct: 168 AS----WNTLISGFAQNGQMQKAFDLFSVMPEKN----GVSWSAMISGYVEHGDLEAAEE 219

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
           L+  V +K++VV TAM++GY + G+VE A  IF +M  K+L+ W++MI+GY EN   ++ 
Sbjct: 220 LYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDG 279

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
           LK+F  M    ++P+ +++ SV+  C++L  L   +++H  + K+    D     ++I M
Sbjct: 280 LKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISM 339

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y KCG L+SA ++F  M R++VISW +MI+ +A HG  R AL  F+KM++ ++ P+ +TF
Sbjct: 340 YCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITF 399

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           + V+ AC+HAG VD G + F SM  E+ I  K  HY C++DL GRA  L EA+ L++ MP
Sbjct: 400 VAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMP 459

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
           F P+  I+G+L+ ACR+H  ++LAEFAA+ LL LDP      V L+NIYA   +W  V +
Sbjct: 460 FKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAK 519

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           +RK MKE  ++K    S IE+ +  +EF ++DR H +   I++KLNE+  ++K AGYVPD
Sbjct: 520 VRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPD 579

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
           +  AL D+E+E K +++LWHSEKLA+ +GL+ +   + IR+ KNLRVC DCH  IK +S 
Sbjct: 580 LEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISA 639

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +  REI++RD TRFHH+++G CSC DYW
Sbjct: 640 IEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 188/434 (43%), Gaps = 78/434 (17%)

Query: 55  TSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKM------ 108
           T  S  T     +  A  +F +IP P S   N  +     S+  + AL  F KM      
Sbjct: 109 TMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIA 168

Query: 109 ----LNEGLT--------IDRFSFPPILKAIARAEGLLEGMQVHG-------LGTKLGFG 149
               L  G           D FS  P    ++ +  ++ G   HG       L   +G  
Sbjct: 169 SWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWS-AMISGYVEHGDLEAAEELYKNVGMK 227

Query: 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
           S   V+T ++  Y   GK+  A  +F +M+ +++V W+ MI GY +N   ++ L +F+ M
Sbjct: 228 S-VVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM 286

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
             S V P+ + LS +L  CS    L  G  +H+ +  + ++ D    ++LI+MY  CG +
Sbjct: 287 IESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDL 346

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
           D A  LF ++  K+++   AM+SGY++ G                               
Sbjct: 347 DSAWKLFLEMPRKDVISWNAMISGYAQHGA------------------------------ 376

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV-- 387
             ++AL LF++M+   MKPD +T ++VI AC H G +D   + +    K  FG + +   
Sbjct: 377 -GRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQ-YFKSMKKEFGIEAKPVH 434

Query: 388 NNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD-------ARNALIFF 439
              +ID+  + G L+ A  + + M  + +   + +++ A  IH +       ARN L   
Sbjct: 435 YTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLL--- 491

Query: 440 NKMKDESIDPNGVT 453
                 ++DP   T
Sbjct: 492 ------NLDPTSAT 499



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 154/332 (46%), Gaps = 60/332 (18%)

Query: 247 NNVALDAH---------LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR- 296
           NNV  + H         L  T+ +    C  ++ A+ +F+K+ ++  V    M+SGY++ 
Sbjct: 59  NNVTPNLHVDTASDVVSLNKTIASFVRACD-LESARNVFEKMSVRTTVTWNTMLSGYTKV 117

Query: 297 AGQVEDARLIFDQMVE-------------------------------KDLICWSAMISGY 325
           AG+V++A  +FD++ E                               KD+  W+ +ISG+
Sbjct: 118 AGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGF 177

Query: 326 AENNHPQEALKLFNEMQVCGMKPDK--VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           A+N   Q+A  LF+ M      P+K  V+  ++IS     G L+ A+ ++    KN    
Sbjct: 178 AQNGQMQKAFDLFSVM------PEKNGVSWSAMISGYVEHGDLEAAEELY----KNVGMK 227

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
            + V  A++  Y K G +E A  +F+RM  +N+++W SMI  +  +  A + L  F  M 
Sbjct: 228 SVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMI 287

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC--MVDLFGRAN 501
           +  + PN ++   VL  CS+   +  GR++   ++     P   +   C  ++ ++ +  
Sbjct: 288 ESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKS---PLSKDTTACTSLISMYCKCG 344

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            L  A +L   MP   +V+ W ++++    HG
Sbjct: 345 DLDSAWKLFLEMP-RKDVISWNAMISGYAQHG 375



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 22/180 (12%)

Query: 370 QRIHLYIDKNAFGGDLRVN--------NAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
           +RIHL +  N    +L V+        N  I  + +   LESAR VFE+M  R  ++W +
Sbjct: 51  RRIHL-VSPNNVTPNLHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNT 109

Query: 422 MINAFA-IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           M++ +  + G  + A   F+K+     +P+ V++  ++  C    L   G E   +  N+
Sbjct: 110 MLSGYTKVAGKVKEAHELFDKIP----EPDSVSY-NIMLVCY---LRSYGVEAALAFFNK 161

Query: 481 YNIPPK-YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
             +P K    +  ++  F +   +++A +L   MP   N V W ++++    HG++E AE
Sbjct: 162 --MPVKDIASWNTLISGFAQNGQMQKAFDLFSVMP-EKNGVSWSAMISGYVEHGDLEAAE 218


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/670 (35%), Positives = 375/670 (55%), Gaps = 64/670 (9%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTI--DRFSFPPILKAIARAEGLLEGMQVHGLG 143
           N  I   S       A++V+L +L    ++   R +   ++ A +       G Q H   
Sbjct: 107 NAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQI 166

Query: 144 TKLGFGSDPFVQTGLVGMYGA-------------------------------CGKILDAR 172
            +LGFG++ FV + LV MY                                 C  + +AR
Sbjct: 167 LRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEAR 226

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
            +F+ M+ RD + W+ M+ G+ QNGL  E L +F  M+   +  D+     IL+AC    
Sbjct: 227 RLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALS 286

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
            L  G+ +H +II               T Y +                 N+ V +A+V 
Sbjct: 287 ALEQGKQIHAYIIR--------------TRYDD-----------------NVFVGSALVD 315

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
            YS+   ++ A  +F +M  K++I W+A+I GY +N   +EA+++F+EMQ  G+ PD  T
Sbjct: 316 MYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYT 375

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           + SVIS+CA+L  L++  + H     +     + V+NA++ +Y KCGS+E A  +F+ M 
Sbjct: 376 LGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMS 435

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
             + +SWT++++ +A  G A+  +  F KM  + + P+GVTFIGVL ACS AG V++GR 
Sbjct: 436 FHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRS 495

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
            F SM  ++ I P  +HY CM+DL+ R+  L+EA E ++ MP  P+ + WG+L++ACR+ 
Sbjct: 496 YFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLR 555

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
           G++E+ ++AA+ LL++DP +  + VLL +++A   +W +V +LR+ M++R + KE  CS 
Sbjct: 556 GDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSW 615

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652
           I+  N+V+ F   D+SH  +  IYEKL  + S++   GY PD+ S L D+ D +K  ++ 
Sbjct: 616 IKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVS 675

Query: 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712
            HSEKLA+ +GLI   ++  IRIVKNLRVC DCHN  K +SK+  R+I++RD  RFH + 
Sbjct: 676 HHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFS 735

Query: 713 DGVCSCKDYW 722
           DGVCSC D+W
Sbjct: 736 DGVCSCGDFW 745



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 221/446 (49%), Gaps = 43/446 (9%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +  +L A AR E  + G     +   L      ++   L+  YG  G+   AR +FD M 
Sbjct: 9   YAALLSAAARTEPHVAGALHCVILRTLPHPPPTYLLNHLLTAYGKAGRHARARRVFDAMP 68

Query: 180 Y-------------------------------RDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
           +                               RDIV ++ +I G+   G   + + ++  
Sbjct: 69  HPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLA 128

Query: 209 MKM--SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
           +    S+V P  + +S ++ A S  G+ + G+  H  I+      +A + S L+ MYA  
Sbjct: 129 LLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKM 188

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
             +  AK  FD+V  KN+V+   M++G  R   VE+AR +F+ M ++D I W+ M++G+ 
Sbjct: 189 SLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFT 248

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
           +N    EAL++F  M+  G+  D+ T  S+++AC  L  L+Q ++IH YI +  +  ++ 
Sbjct: 249 QNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVF 308

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
           V +A++DMY+KC S++ A  VF RM  +N+ISWT++I  +  +G +  A+  F++M+ + 
Sbjct: 309 VGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDG 368

Query: 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY----GCMVDLFGRANL 502
           IDP+  T   V+ +C++   ++EG +          +     HY      +V L+G+   
Sbjct: 369 IDPDDYTLGSVISSCANLASLEEGAQFHC-----LALVSGLMHYITVSNALVTLYGKCGS 423

Query: 503 LREALELVETMPFAPNVVIWGSLMAA 528
           + +A  L + M F   V  W +L++ 
Sbjct: 424 IEDAHRLFDEMSFHDQVS-WTALVSG 448



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 157/337 (46%), Gaps = 45/337 (13%)

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
           +L + L+T Y   G    A+ +FD +   NL    A++S  + A  + D   +F  M ++
Sbjct: 42  YLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQR 101

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVC--GMKPDKVTMLSVISACAHLGVLDQAQR 371
           D++ ++A+I+G++      +A++++  +      ++P ++TM +++ A + LG     ++
Sbjct: 102 DIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQ 161

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAK-------------------------------CGS 400
            H  I +  FG +  V + ++DMYAK                               C  
Sbjct: 162 FHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKM 221

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E AR +FE M  R+ I+WT+M+  F  +G    AL  F +M+ + I  +  TF  +L A
Sbjct: 222 VEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTA 281

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHY----GCMVDLFGRANLLREALELVETMPFA 516
           C     +++G++I A     Y I  +Y+        +VD++ +   ++ A  +   M   
Sbjct: 282 CGALSALEQGKQIHA-----YIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMT-C 335

Query: 517 PNVVIWGSLMAACRVHG--EIELAEFAAKQLLQLDPD 551
            N++ W +L+     +G  E  +  F+  Q   +DPD
Sbjct: 336 KNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/747 (33%), Positives = 395/747 (52%), Gaps = 71/747 (9%)

Query: 8   TKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSL 67
           T P T   +  I++ S L ++        K+       NS     +L+++S        L
Sbjct: 36  TNPETFLYNNLINAYSKLGNITYARHVFDKMPQP----NSFSWNTMLSAYS----KSGDL 87

Query: 68  YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKA 126
                IFS +P       N  I           A+K +  M+ +G L ++R +F  +L  
Sbjct: 88  STMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLL 147

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA---------------------- 164
           ++    +  G Q+HG   K GFG+  FV + LV MY                        
Sbjct: 148 VSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMY 207

Query: 165 ---------CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
                     G + D++ +F  M  RD + W+ MI G  QNGL  E ++LF +M+   + 
Sbjct: 208 NTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMA 267

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
            D+     +L+AC     L  G+ +H  II +    +  + S L+ MY  C C       
Sbjct: 268 MDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMY--CKCR------ 319

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
                                   V  A  +F +M  K+++ W+AM+ GY +N   +EA+
Sbjct: 320 -----------------------SVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAV 356

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           ++F +MQ  G++PD  T+ SVIS+CA+L  L++  + H     +     + V+NA+I +Y
Sbjct: 357 RVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLY 416

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
            KCGS+E + ++F+ M  R+ +SWT++++ +A  G A   +  F +M  + + P+ VTFI
Sbjct: 417 GKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFI 476

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
            VL ACS AGLV+ G++ F SM  ++ I P  +HY CM+DLFGRA  L EA   +  MPF
Sbjct: 477 AVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPF 536

Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575
           +P+ + W +L+++CR++G  E+ ++AA+ LL+LDP +    +LLS+IYA   +W +V +L
Sbjct: 537 SPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQL 596

Query: 576 RKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
           R+ M+E+G  KE   S I+  ++VY F   D+S   +DQIY +L ++  ++   GYVPD 
Sbjct: 597 RRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDA 656

Query: 636 HSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKV 695
            S L D+ED EK +++  HSEKLA+ +GL+       IR+VKNLRVC DCHN  K +SK+
Sbjct: 657 SSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKI 716

Query: 696 YAREIVIRDRTRFHHYKDGVCSCKDYW 722
             REI++RD  RFH +KDG CSC D+W
Sbjct: 717 SQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 163/362 (45%), Gaps = 44/362 (12%)

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           C    N +  + +H  II +    +  L + LI  Y+  G +  A+ +FDK+   N    
Sbjct: 15  CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG-M 346
             M+S YS++G +   + IF  M  +D + W+++ISGY       EA+K +N M   G +
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE 406
             +++T  +++   +  G +D  ++IH  I K  FG  + V ++++DMYAK G +  A +
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQ 194

Query: 407 VFERMRRRNV-------------------------------ISWTSMINAFAIHGDARNA 435
           VF+ ++ RNV                               ISWT+MI     +G    A
Sbjct: 195 VFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEA 254

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY----G 491
           +  F  M+ E +  +  TF  VL AC     + EG+EI   +     I   Y H      
Sbjct: 255 MDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLI-----IRSGYNHNVFVGS 309

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA--EFAAKQLLQLD 549
            +VD++ +   +R A  + + M    NVV W +++     +G  E A   F   Q   ++
Sbjct: 310 ALVDMYCKCRSVRYAEAVFKRMA-NKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIE 368

Query: 550 PD 551
           PD
Sbjct: 369 PD 370


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/712 (35%), Positives = 395/712 (55%), Gaps = 46/712 (6%)

Query: 16  STAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALS 72
           S+ I  C    S+T + +  +  LK    HHS  + L+   L           S+ YA  
Sbjct: 81  SSLIQQCIGIKSITDITKIQSHALKRGF-HHSLGNKLIDAYLKC--------GSVVYARK 131

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F ++P       N  I +   + R K A+ ++ +M+ +G+  D F+F  + KA +    
Sbjct: 132 VFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGL 191

Query: 133 LLEGMQVHGLGTKLGFG-SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
           + EG + HG    LG G S+ FV + LV MY   GK+ DARL+ D++  +D+V ++ +I 
Sbjct: 192 VHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIV 251

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           GY  +G   E L +F  M    +E +E  LS +L  C    +L+ G  +H  I+   +  
Sbjct: 252 GYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLES 311

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
               Q++L+TMY                                R G V+D+  +F Q +
Sbjct: 312 AVASQTSLLTMYY-------------------------------RCGLVDDSLKVFKQFI 340

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
             + + W+++I G  +N   + AL  F +M    + P+  T+ SV+ AC+ L +L+Q ++
Sbjct: 341 NPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQ 400

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           IH  + K     D  V  A+ID Y KCGS E AR VF  +   +V+S  SMI ++A +G 
Sbjct: 401 IHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGF 460

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
              AL  F+ MKD  ++PN VT++GVL AC++AGL++EG  IF+S  N  NI    +HY 
Sbjct: 461 GHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYA 520

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           CMVDL GRA  L+EA  L+  +  + +VVIW +L++ACR+HG++E+A+    +++ L P+
Sbjct: 521 CMVDLLGRAGRLKEAEMLINQVNIS-DVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPE 579

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
             G  VLLSN+YA    W  V E++ +M+E  + K  A S +++  E++ F+  D SH  
Sbjct: 580 DGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPN 639

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK-KD 670
              I EKL E+I ++K  GYVPD    L DL++E+K   + +HSEKLA+ + L  S  K+
Sbjct: 640 FRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAFALWRSNYKN 699

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + IRI+KNLRVC DCH ++K VSK+  R+I+ RD  RFHH+++G+CSC DYW
Sbjct: 700 TTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDYW 751


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/602 (38%), Positives = 358/602 (59%), Gaps = 3/602 (0%)

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L+  AR +      ++H    K GF     +   L+ +YG CG I  A  +FD+M  RD 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           V W+ ++  + +  +    L++   M     ++PD  V + I+ ACS  G L  G+ VH 
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
             + +    D  ++S+LI MY  CG  D A+ +FD +L KN V  T+M+SGY+R+G+  +
Sbjct: 130 RFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCE 189

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK-PDKVTMLSVISACA 361
           A  +F Q   ++L  W+A+ISG  ++ H   +  LFNEM+  G+   D + + SV+  CA
Sbjct: 190 AMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCA 249

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
           +L +L+  ++IH  +    F   L ++NA++DMYAKC  + +A+++F RM R++VISWTS
Sbjct: 250 NLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTS 309

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           +I   A HG A  AL  +++M    I PN VTF+G+LYACSHAGLV  GRE+F SMT +Y
Sbjct: 310 IIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDY 369

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
           +I P  +HY C++DL  R+  L EA  L++ +PF P+   W SL++AC  H  +E+    
Sbjct: 370 SINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRI 429

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
           A ++L L P+     +LLSN+YA  + W  V ++RK M    + KE   S I+   +   
Sbjct: 430 ADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQV 489

Query: 602 FLTADR-SHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
           F   +   H   ++I   L ++ +E++  GYVP+    L D+E +EK + + WHSE+LA+
Sbjct: 490 FHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAV 549

Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
            YGL+ +   + IRIVKNLR+C DCHN +K +S +  REI++RD TR+HH+K+G CSC D
Sbjct: 550 AYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCND 609

Query: 721 YW 722
           +W
Sbjct: 610 FW 611



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/473 (24%), Positives = 235/473 (49%), Gaps = 33/473 (6%)

Query: 30  QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFI 89
           + H+QI+K   +   ++SLL   LL  +      P     AL +F ++P          +
Sbjct: 24  ELHSQIIK---AGFDKSSLLSNTLLDVYGKCGLIPQ----ALQLFDEMPNRDHVSWASIL 76

Query: 90  RAISWSHRPKHALKVFLKML-NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148
            A + +  P+  L +   M  ++GL  D F F  I++A +    L  G QVH       F
Sbjct: 77  TAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXF 136

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
             D  V++ L+ MY  CG+  +AR +FD + +++ V W+ MI GY ++G   E ++LF +
Sbjct: 137 CDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQ 196

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV------ALDAHLQSTLITM 262
             + N+     ++S ++ +         G  ++ F + N +       +D  + S+++  
Sbjct: 197 APVRNLFSWTALISGLIQS---------GHGIYSFSLFNEMRREGIDIVDPLVLSSVVGG 247

Query: 263 YANCGCMDMAKGLFDKVLLKN----LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
            AN   +++ K +   V+       L +S A+V  Y++   +  A+ IF +M  KD+I W
Sbjct: 248 CANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISW 307

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +++I G A++   +EAL L++EM +  +KP++VT + ++ AC+H G++ + + +   +  
Sbjct: 308 TSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTT 367

Query: 379 N-AFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNAL 436
           + +    L+    ++D+ ++ G L+ A  + +++  + +  +W S+++A   H +    +
Sbjct: 368 DYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGV 427

Query: 437 IFFNKMKD-ESIDPNGVTFIGVLYACSHA-GLVDEGREIFASMTNEYNIPPKY 487
              +++ D +  DP+    +  +YA +   G V + R++ +SM  E    P Y
Sbjct: 428 RIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSM--EVRKEPGY 478



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 3/177 (1%)

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
            L  +  CA       A  +H  I K  F     ++N ++D+Y KCG +  A ++F+ M 
Sbjct: 6   FLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMP 65

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDEGR 471
            R+ +SW S++ A       R  L   N M   + + P+   F  ++ ACS  G +  G+
Sbjct: 66  NRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGK 125

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           ++ A          +      ++D++ +     EA  + +++ F  N V W S+++ 
Sbjct: 126 QVHARFMLSXFCDDEVVK-SSLIDMYTKCGQPDEARAVFDSILFK-NSVSWTSMISG 180


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/590 (40%), Positives = 348/590 (58%), Gaps = 31/590 (5%)

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L +  QVH      G   +  V   L+ MY   G + DA+ +FD MS R    WSV++ G
Sbjct: 66  LFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGG 125

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y + G F     +F E+  S    D+     ++ AC    +L  G  +H   +   +   
Sbjct: 126 YAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYG 185

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             + +TL+ MYA C           KV                    VEDA  IF +M +
Sbjct: 186 HFVCATLVDMYARC-----------KV--------------------VEDAHQIFVKMWK 214

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           +DL  W+ MI   AE+  P E+L  F+ M+  G+ PDKV +++V+ ACA LG +++A+ I
Sbjct: 215 RDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAI 274

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H YI+   +  D+ +  A+IDMYAKCGS+ESAR +F+RM+ RNVI+W++MI A+  HG  
Sbjct: 275 HAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQG 334

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
             AL  F  M    I PN +TF+ +LYACSHAGL++EG+  F+SM +EY + P  +HY C
Sbjct: 335 EKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTC 394

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           MVDL GRA  L EALE++E MP   + V+WG+L+ ACR+H  ++LAE  A+ LL+L    
Sbjct: 395 MVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQK 454

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
            G  VLLSNIYA   +W+D+ + R  M + G+ K    + IE+  ++Y+F   D++H ++
Sbjct: 455 PGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRS 514

Query: 613 DQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSC 672
           ++IY+ L  +  +L+ AGY PD +  L D+++E K+ ++  HSEKLA+ +GL+   +   
Sbjct: 515 NEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHP 574

Query: 673 IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           IRI KNLRVC DCH F K VS +  + I++RD  RFHH+K+GVCSC+DYW
Sbjct: 575 IRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 207/421 (49%), Gaps = 52/421 (12%)

Query: 17  TAISSCSSLTHMKQTHAQI-LKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALS--- 72
           +++ SC +L  ++Q HAQI    +  + +  + LL + +   +L       L+  +S   
Sbjct: 58  SSLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDA--QELFDGMSKRH 115

Query: 73  --IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARA 130
              +S I    ++V N F  +  W         +F ++L  G  +D +S P +++A    
Sbjct: 116 PYSWSVIVGGYAKVGNFF--SCFW---------MFRELLRSGAPLDDYSAPVVIRACRDL 164

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
           + L  G  +H +  K G     FV   LV MY  C  + DA  +F KM  RD+  W+VMI
Sbjct: 165 KDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMI 224

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
               ++G+  E L  F+ M+   + PD++ L  ++ AC++ G ++  +A+H +I     +
Sbjct: 225 GALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYS 284

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
           LD  L + +I MYA CG ++ A+ +FD++ ++N++  +AM++ Y   GQ E         
Sbjct: 285 LDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGE--------- 335

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
                                 +AL+LF  M   G+ P+++T +S++ AC+H G++++ Q
Sbjct: 336 ----------------------KALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQ 373

Query: 371 RIHLYI-DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAI 428
           R    + D+     D++    ++D+  + G L+ A E+ E M   ++ + W +++ A  I
Sbjct: 374 RFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRI 433

Query: 429 H 429
           H
Sbjct: 434 H 434


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/751 (33%), Positives = 393/751 (52%), Gaps = 83/751 (11%)

Query: 12  TLPTSTAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY 68
            LP     S C   ++   + Q HA ILK                 T  SLP T      
Sbjct: 9   ALPLFENFSHCLCSATKASLSQAHAHILK-----------------TGISLPET------ 45

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
             + IFS++        N F           H ++VF  ML +G+  D    P ++K  A
Sbjct: 46  --IQIFSKL--------NHF----------GHVIRVFSYMLTQGIVPDSRVLPTVIKTCA 85

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM---------- 178
               L  G Q+H      G G D  V + L+ MY     + DAR +FDK+          
Sbjct: 86  ALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSA 145

Query: 179 -------------------SYRDI------VPWSVMIDGYFQNGLFDEVLNLFEEMKMSN 213
                                RD+      V W+ MI G+ ++G + + + +F+ M +  
Sbjct: 146 LISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEG 205

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           ++PD   +S +L A         G  +H ++I   +  D  + S LI MY  C C     
Sbjct: 206 LKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMS 265

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL--ICWSAMISGYAENNHP 331
           G+F+++   ++    A+V+G SR G V++A  +F Q    DL  + W++MI+  ++N   
Sbjct: 266 GVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKD 325

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
            EAL+LF EMQ+ G+KP+ VT+  ++ AC ++  L   +  H +  +N    D+ V +A+
Sbjct: 326 MEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSAL 385

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           IDMYAKCG + ++R  F+ M  RN++SW S++  +A+HG    A+  F  M+     P+ 
Sbjct: 386 IDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDH 445

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
           V+F  VL AC+  GL +EG   F SM+  + +  + EHY CMV L GR+  L EA  +++
Sbjct: 446 VSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIK 505

Query: 512 TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
            MPF P+  +WG+L+++CRVH  ++L E AAK++ +L+P + G  +LLSNIYA    W +
Sbjct: 506 QMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVE 565

Query: 572 VGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY 631
           V  +R  M+ RG+ K    S IE+ N+V+  L  D SH Q  QI EKL ++  E+K +GY
Sbjct: 566 VDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGY 625

Query: 632 VPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKL 691
           VP     L D+E+++K +++  HSEKLA+  GL+++K    ++++KNLR+C DCH  IK 
Sbjct: 626 VPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPLQVIKNLRICRDCHAVIKF 685

Query: 692 VSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +S    REI +RD  RFH +K GVCSC DYW
Sbjct: 686 ISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/607 (39%), Positives = 376/607 (61%), Gaps = 19/607 (3%)

Query: 122 PILKAIARA--EGLLEG-MQV-HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
           P+ K IAR    G ++G ++V HG+  K     +      L+G+     ++++A  +FD+
Sbjct: 63  PLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSL----LIGISKDPSRMMEAHQLFDE 118

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           +   D   +++M+  Y +N  F++  + F+ M       D    + +++  +R G +   
Sbjct: 119 IPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFK----DAASWNTMITGYARRGEMEKA 174

Query: 238 -EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
            E  +  +  N V+ +A     +I+ Y  CG ++ A   F    ++ +V  TAM++GY +
Sbjct: 175 RELFYSMMEKNEVSWNA-----MISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMK 229

Query: 297 AGQVEDARLIF-DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           A +VE A  +F D  V K+L+ W+AMISGY EN+ P++ LKLF  M   G++P+   + S
Sbjct: 230 AKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSS 289

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
            +  C+ L  L   ++IH  + K+    D+    ++I MY KCG L  A ++FE M++++
Sbjct: 290 ALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKD 349

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V++W +MI+ +A HG+A  AL  F +M D  I P+ +TF+ VL AC+HAGLV+ G   F 
Sbjct: 350 VVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFE 409

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           SM  +Y + P+ +HY CMVDL GRA  L EAL+L+ +MPF P+  ++G+L+ ACRVH  +
Sbjct: 410 SMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNV 469

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           ELAEFAA++LLQL+  +    V L+NIYA   RW+DV  +RK MKE  ++K    S IE+
Sbjct: 470 ELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEI 529

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
            N+V+ F ++DR H + D I++KL E+  ++K AGY P++  AL ++E+E+K +++LWHS
Sbjct: 530 RNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHS 589

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ +G I   + S I++ KNLR+C DCH  IK +S++  REI++RD TRFHH+KDG 
Sbjct: 590 EKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGS 649

Query: 716 CSCKDYW 722
           CSC DYW
Sbjct: 650 CSCGDYW 656



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 82/160 (51%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I     + RP+  LK+F  ML EG+  +       L   +    L  G Q+H + +K
Sbjct: 253 NAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSK 312

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
               +D    T L+ MY  CG++ DA  +F+ M  +D+V W+ MI GY Q+G  D+ L L
Sbjct: 313 STLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCL 372

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           F EM  + + PD +    +L AC+ AG ++ G A  E ++
Sbjct: 373 FREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMV 412


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/615 (38%), Positives = 354/615 (57%), Gaps = 54/615 (8%)

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
           P L  +     L +  Q+H    KLGF ++P V T          K   A    D + Y 
Sbjct: 9   PCLDILQACNTLPKLAQLHTHIIKLGFQNNPLVLT----------KFTSASSNLDAIPYA 58

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS--------------NVEPDEMVLSKILSA 227
             + +SV     +   LF  ++  + E   S               + P++     +L A
Sbjct: 59  MSLVFSVEDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKA 118

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           C+   +L+ G+AVH  ++      D  +Q+T++ MY  C                     
Sbjct: 119 CAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCC--------------------- 157

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
                    +G +E AR +FD+M + D + W+AMI GYA       A+ LF +MQ+ G+ 
Sbjct: 158 ---------SGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVC 208

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           PD VTM+SV+SAC  LG L+  + I  YI+K      + ++NA++DM+AKCG ++ A  +
Sbjct: 209 PDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGL 268

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F  M +R ++SWTS+I   A+HG    A+  F +MK   + P  + FIG+L ACSH+GLV
Sbjct: 269 FRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLV 328

Query: 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
           + GR+ F+ MT ++ I PK EHYGCMVDL  RA L+ EALE VE MP  PN +IW +L++
Sbjct: 329 ERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLIS 388

Query: 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587
           ACRVHGE++L E  +KQL++ +P H+   VLLSNIY K   W+   ++R +M ++GI K 
Sbjct: 389 ACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKV 448

Query: 588 RACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEK 647
              + IE++NE++EF+  DRSH Q ++I + +NE+  E+K AGY P      +D+++E+K
Sbjct: 449 PGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDK 508

Query: 648 REVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTR 707
            + +  HSEKLA+ + L+++   S IRI KNLRVC DCH+  K +SK+Y REIV+RDR+R
Sbjct: 509 EDALSRHSEKLAIAFALLNTPPGSPIRITKNLRVCGDCHSASKFISKIYNREIVMRDRSR 568

Query: 708 FHHYKDGVCSCKDYW 722
           FHH++DG CSC D+W
Sbjct: 569 FHHFRDGQCSCGDFW 583



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 126/430 (29%), Positives = 217/430 (50%), Gaps = 51/430 (11%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P    + +C++L  + Q H  I+KL      QN+    L+LT F+  ++   ++ YA+S+
Sbjct: 9   PCLDILQACNTLPKLAQLHTHIIKLGF----QNN---PLVLTKFTSASSNLDAIPYAMSL 61

Query: 74  FSQIPAPPSRVSNKF-----IRAISWSHRPKH-ALKVFLKMLNEGLTIDRFSFPPILKAI 127
              +    +RV + F     IRA + S + KH A+  +  ML  G++ ++++FP +LKA 
Sbjct: 62  VFSVE--DARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKAC 119

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC-GKILDARLMFDKMSYRDIVPW 186
           A    L  G  VHG   K GF  D FVQ  +V MY  C G +  AR +FD+M   D V W
Sbjct: 120 AGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTW 179

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + MI GY + G     + LF +M+++ V PD++ +  +LSAC+  G L  G+ +  +I  
Sbjct: 180 TAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEK 239

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
             V     L + L+ M+A CG +D A GLF  +  + +V  T+++ G +  G+       
Sbjct: 240 ERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGR------- 292

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
                                     EA+ LF EM+  GM P+ +  + ++SAC+H G++
Sbjct: 293 ------------------------GLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLV 328

Query: 367 DQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMI 423
           ++ ++    + +  FG   ++ +   ++D+ ++ G +  A E  ERM    N I W ++I
Sbjct: 329 ERGRQYFSEMTRQ-FGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLI 387

Query: 424 NAFAIHGDAR 433
           +A  +HG+ +
Sbjct: 388 SACRVHGELK 397


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/601 (38%), Positives = 355/601 (59%), Gaps = 2/601 (0%)

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L+A AR +    G ++H    K G      +   L+ MYG CG I DA  +F+++ +RD 
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDP 69

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           + W+ ++    Q  L    L++F  M K   ++PD  V + ++ AC+  G +  G+ VH 
Sbjct: 70  ISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHA 129

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
             I + V+ D  ++S+L+ MYA CG  D+ + +FD +  KN +  TAM+SGY+++G+  D
Sbjct: 130 TFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLD 189

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK-PDKVTMLSVISACA 361
           A  +F +M  K+L+ W+A+ISG  ++ +  ++  LF EM+  G+   D   + S+I A A
Sbjct: 190 AIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASA 249

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
           +L VL   ++IH  +    +   L V+NA++DMYAKC  + +A+++F RM +R+++SWTS
Sbjct: 250 NLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTS 309

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           +I   A HG A  AL  +N+M    + PN VTF+G++YACSH GLV +GR  F SM  +Y
Sbjct: 310 IIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDY 369

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
            I P  +HY C++DL  R+  L EA  L++ MPF P+   W +L++AC  H    +    
Sbjct: 370 GINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRV 429

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
           A  LL L P+     +LLSNIYA    W+ V ++R+ M    + KE   S I +  E   
Sbjct: 430 ADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQV 489

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           FL  + SH   ++I+  L E+ +E+K  GY+PD  S L DLE +EK   + WHSE+LA+ 
Sbjct: 490 FLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLAVA 549

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           YGL+       + IVKNLRVC DCH  +K +S +  REIV+RD  R+HH+KDG CSC ++
Sbjct: 550 YGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCNNF 609

Query: 722 W 722
           W
Sbjct: 610 W 610



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 224/445 (50%), Gaps = 39/445 (8%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPILKAIA 128
           AL++F+Q+P          + A + ++ P   L +F  M  + GL  D + F  ++KA A
Sbjct: 57  ALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACA 116

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
               + +G QVH          D  V++ LV MY  CG     R++FD +S ++ + W+ 
Sbjct: 117 ILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTA 176

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI---- 244
           MI GY Q+G   + + LF++M + N+    +  + ++S   ++GN  + ++ + F+    
Sbjct: 177 MISGYAQSGRKLDAIQLFQKMPVKNL----LSWTALISGLVQSGN--WVDSFYLFMEMRS 230

Query: 245 --IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL----KNLVVSTAMVSGYSRAG 298
             ID    +D  + S++I   AN   + + K +   V+L     +L VS A+V  Y++  
Sbjct: 231 KGID---IVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCS 287

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
            V  A+ IF +MV++D++ W+++I G A++   +EAL L+N M   G+KP++VT + +I 
Sbjct: 288 DVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIY 347

Query: 359 ACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNV 416
           AC+H+G++ + +   +  I        L+    ++D+ ++ G LE A  + + M  + + 
Sbjct: 348 ACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDE 407

Query: 417 ISWTSMINAFAIHGDARNALIFFN------KMKDESIDPNGVTFIGVLYACSHAG-LVDE 469
            +W ++++A   H   RN LI          +K E  DP+    +  +YA +     V +
Sbjct: 408 ATWAALLSACNHH---RNTLIGIRVADHLLSLKPE--DPSTYILLSNIYASAAMWESVSK 462

Query: 470 GREIFASMTNEYNIPPKYEHYGCMV 494
            R + A+M  +     K   Y C+V
Sbjct: 463 VRRLMAAMEVK-----KEPGYSCIV 482


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/632 (37%), Positives = 368/632 (58%), Gaps = 13/632 (2%)

Query: 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG-FGSDPFVQTGL 158
            AL VF KM+ EG+  +  +    + A      L  G ++HG   K+    SD  V   L
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 404

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           V  Y  C  +  AR  F  +   D+V W+ M+ GY   G  +E + L  EMK   +EPD 
Sbjct: 405 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDI 464

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIID-NNVALDAHLQSTLITMYANCG---CMDMAKG 274
           +  + +++  ++ G+   G+A  EF    +++ +D +  +T+    A CG    + + K 
Sbjct: 465 ITWNGLVTGFTQYGD---GKAALEFFQRMHSMGMDPN-TTTISGALAACGQVRNLKLGKE 520

Query: 275 LFDKVLLKNLVVST----AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
           +   VL  ++ +ST    A++S YS    +E A  +F ++  +D++ W+++IS  A++  
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
              AL L  EM +  ++ + VTM+S + AC+ L  L Q + IH +I +        + N+
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNS 640

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           +IDMY +CGS++ +R +F+ M +R+++SW  MI+ + +HG   +A+  F + +   + PN
Sbjct: 641 LIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPN 700

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
            +TF  +L ACSH+GL++EG + F  M  EY + P  E Y CMVDL  RA    E LE +
Sbjct: 701 HITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFI 760

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
           E MPF PN  +WGSL+ ACR+H   +LAE+AA+ L +L+P   G  VL++NIY+   RW+
Sbjct: 761 EKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWE 820

Query: 571 DVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAG 630
           D  ++R  MKERG+ K   CS IE+  +++ F+  D SH   +QI  K+  +  ++K  G
Sbjct: 821 DAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIG 880

Query: 631 YVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIK 690
           YVPD +  L D++++EK   +  HSEK+AL +GLIS+   + +RI+KNLRVC DCH+  K
Sbjct: 881 YVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATK 940

Query: 691 LVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            +SKV  R+I++RD  RFHH+ DGVCSC DYW
Sbjct: 941 FISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 131/490 (26%), Positives = 231/490 (47%), Gaps = 78/490 (15%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +  IL+   +   L  G QVH      G     F+ + L+ +Y   G + DAR MFDKMS
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            R++  W+ +++ Y   G ++E + LF  M    V PD  V  K+  ACS   N   G+ 
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-----NLVVS------- 287
           V+++++      ++ ++ +++ M+  CG MD+A+  F+++  K     N++VS       
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 271

Query: 288 -----------------------TAMVSGYSRAGQVEDARLIFDQM-----VEKDLICWS 319
                                   A++SGY+++GQ E+A   F +M      + +++ W+
Sbjct: 272 FKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWT 331

Query: 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY-IDK 378
           A+I+G  +N +  EAL +F +M + G+KP+ +T+ S +SAC +L +L   + IH Y I  
Sbjct: 332 ALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKV 391

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI---------- 428
                DL V N+++D YAKC S+E AR  F  +++ +++SW +M+  +A+          
Sbjct: 392 EELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIEL 451

Query: 429 -------------------------HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
                                    +GD + AL FF +M    +DPN  T  G L AC  
Sbjct: 452 LSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQ 511

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
              +  G+EI   +   + I         ++ ++   + L  A  +   +    +VV+W 
Sbjct: 512 VRNLKLGKEIHGYVLRNH-IELSTGVGSALISMYSGCDSLEVACSVFSELS-TRDVVVWN 569

Query: 524 SLMAACRVHG 533
           S+++AC   G
Sbjct: 570 SIISACAQSG 579



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 143/595 (24%), Positives = 266/595 (44%), Gaps = 96/595 (16%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           +  +K+F  M+NEG+  D F FP + KA +  +    G  V+     +GF  +  V+  +
Sbjct: 172 EETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSI 231

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + M+  CG++  AR  F+++ ++D+  W++M+ GY   G F + L    +MK+S V+PD+
Sbjct: 232 LDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQ 291

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFI---------------------------------I 245
           +  + I+S  +++G   + EA   F+                                 +
Sbjct: 292 VTWNAIISGYAQSGQ--FEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSV 349

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMA--------KGLFDKV--LLKNLVVSTAMVSGYS 295
              + L+    +++    A   C +++         G   KV  L  +L+V  ++V  Y+
Sbjct: 350 FRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYA 409

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV---- 351
           +   VE AR  F  + + DL+ W+AM++GYA     +EA++L +EM+  G++PD +    
Sbjct: 410 KCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNG 469

Query: 352 -------------------------------TMLSVISACAHLGVLDQAQRIHLYIDKNA 380
                                          T+   ++AC  +  L   + IH Y+ +N 
Sbjct: 470 LVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNH 529

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
                 V +A+I MY+ C SLE A  VF  +  R+V+ W S+I+A A  G + NAL    
Sbjct: 530 IELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLR 589

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500
           +M   +++ N VT +  L ACS    + +G+EI   +     +         ++D++GR 
Sbjct: 590 EMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFII-RCGLDTCNFILNSLIDMYGRC 648

Query: 501 NLLREALELVETMPFAPNVVIWGSLMAACRVHG----EIELAEFAAKQLLQLDPDHDGAL 556
             ++++  + + MP   ++V W  +++   +HG     + L  F   + + L P+H    
Sbjct: 649 GSIQKSRRIFDLMP-QRDLVSWNVMISVYGMHGFGMDAVNL--FQQFRTMGLKPNHITFT 705

Query: 557 VLLSNIYAK---DKRWQDVGELRKSMKERGILKERAC-----SRIEMNNEVYEFL 603
            LLS        ++ W+    ++        +++ AC     SR    NE  EF+
Sbjct: 706 NLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFI 760



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 150/340 (44%), Gaps = 38/340 (11%)

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMV--LSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           +NG+ +    L   M ++N  PDE +   + IL  C +  NL  G  VH  ++ N V + 
Sbjct: 66  RNGVLNNAAMLLSSMDLTN--PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVC 123

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             L S L+ +Y   GC                               VEDAR +FD+M E
Sbjct: 124 EFLGSRLLEVYCQTGC-------------------------------VEDARRMFDKMSE 152

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           +++  W+A++  Y      +E +KLF  M   G++PD      V  AC+ L      + +
Sbjct: 153 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           + Y+    F G+  V  +I+DM+ KCG ++ AR  FE +  ++V  W  M++ +   G+ 
Sbjct: 213 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEF 272

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
           + AL   + MK   + P+ VT+  ++   + +G  +E  + F  M    +  P    +  
Sbjct: 273 KKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTA 332

Query: 493 MVDLFGRANLLREALELVETMPF---APNVVIWGSLMAAC 529
           ++    +     EAL +   M      PN +   S ++AC
Sbjct: 333 LIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/459 (22%), Positives = 194/459 (42%), Gaps = 67/459 (14%)

Query: 6   QPTKPLTLPTSTAISSCSSLT---HMKQTHAQILKLSHSHHS---QNSLL---------- 49
           +  KP ++  ++A+S+C++L+   H ++ H   +K+          NSL+          
Sbjct: 356 EGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVE 415

Query: 50  ----------------LKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAIS 93
                              +L  ++L  +   ++     +  Q   P     N  +   +
Sbjct: 416 VARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFT 475

Query: 94  WSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPF 153
                K AL+ F +M + G+  +  +    L A  +   L  G ++HG   +        
Sbjct: 476 QYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTG 535

Query: 154 VQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN 213
           V + L+ MY  C  +  A  +F ++S RD+V W+ +I    Q+G     L+L  EM +SN
Sbjct: 536 VGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSN 595

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           VE + + +   L ACS+   L  G+ +H+FII   +     + ++LI MY  CG +  ++
Sbjct: 596 VEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSR 655

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
            +FD +  ++LV    M+S Y   G                                  +
Sbjct: 656 RIFDLMPQRDLVSWNVMISVYGMHG-------------------------------FGMD 684

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AI 391
           A+ LF + +  G+KP+ +T  +++SAC+H G++++  + +  + K  +  D  V     +
Sbjct: 685 AVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWK-YFKMMKTEYAMDPAVEQYACM 743

Query: 392 IDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           +D+ ++ G      E  E+M    N   W S++ A  IH
Sbjct: 744 VDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIH 782



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 119/236 (50%), Gaps = 10/236 (4%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           S    P T   S A+++C  + ++K   + H  +L+   +H   ++ +   L++ +S   
Sbjct: 492 SMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLR---NHIELSTGVGSALISMYS--- 545

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
               SL  A S+FS++      V N  I A + S R  +AL +  +M    + ++  +  
Sbjct: 546 -GCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMV 604

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
             L A ++   L +G ++H    + G  +  F+   L+ MYG CG I  +R +FD M  R
Sbjct: 605 SALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQR 664

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           D+V W+VMI  Y  +G   + +NLF++ +   ++P+ +  + +LSACS +G +  G
Sbjct: 665 DLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEG 720


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/636 (36%), Positives = 373/636 (58%), Gaps = 45/636 (7%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG-FGSDPFVQTGLV 159
           AL+   +M+ EG+  D F+   +L A +  E L  G ++H    K G    + FV + LV
Sbjct: 282 ALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALV 341

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-NVEPDE 218
            MY  C ++L    +FD M  R I  W+ MI GY QN   +E L LF EM+ S  +  + 
Sbjct: 342 DMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANS 401

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
             ++ ++ AC R+G  S  EA+H F++   +  D  +Q+ L         MDM       
Sbjct: 402 TTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNAL---------MDM------- 445

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
                          YSR G+++ A+ IF +M ++DL+ W+ +I+GY  +   ++AL + 
Sbjct: 446 ---------------YSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLML 490

Query: 339 NEMQV-----------CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
           ++MQ+             +KP+ +T+++++ +CA L  L + + IH Y  KN    D+ V
Sbjct: 491 HKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAV 550

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
            +A++DMYAKCG L+ +R+VF+++  RNVI+W  ++ A+ +HG++++A+     M  + +
Sbjct: 551 GSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGV 610

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            PN VTFI V  ACSH+G+V+EG +IF +M  +Y + P  +HY C+VDL GRA  ++EA 
Sbjct: 611 KPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAY 670

Query: 508 ELVETMPFA-PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566
           +L+  +P        W SL+ ACR+H  +E+ E AA+ L+QL+P+     VLL+NIY+  
Sbjct: 671 QLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSA 730

Query: 567 KRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL 626
             W    E+R++MK +G+ KE  CS IE  +EV++F+  D SH Q++++   L  +   +
Sbjct: 731 GLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERM 790

Query: 627 KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCH 686
           +  GY+PD    L ++E++EK  ++  HSEKLA+ +G++++   + IR+ KNLRVC DCH
Sbjct: 791 RKEGYIPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCH 850

Query: 687 NFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              K +SKV  REI++RD  RFHH+K+G CSC DYW
Sbjct: 851 LATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 135/533 (25%), Positives = 244/533 (45%), Gaps = 58/533 (10%)

Query: 18  AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI 77
           A++    +   KQ HA + K  +     +S+ +   L +         ++Y    +F +I
Sbjct: 102 AVADLQDMDLGKQIHAHVYKFGYG---VDSVTVANTLVNLYRKCGDFGAVY---KVFDRI 155

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR---AEGLL 134
                   N  I ++    + + AL+ F  ML+E +    F+   +  A +     EGLL
Sbjct: 156 SERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLL 215

Query: 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
            G QVH  G + G   + F+   LV MYG  GK+  ++++      RD+V W+ ++    
Sbjct: 216 MGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLC 274

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD-- 252
           QN  F E L    EM +  VEPD   +S +L ACS    L  G+ +H + + N  +LD  
Sbjct: 275 QNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNG-SLDEN 333

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
           + + S L+ MY NC  +     +FD +  + + +  AM++GY                  
Sbjct: 334 SFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGY------------------ 375

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
                        A+N + +EAL LF EM +  G+  +  TM  V+ AC   G   + + 
Sbjct: 376 -------------AQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEA 422

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           IH ++ K     D  V NA++DMY++ G ++ A+ +F +M  R++++W ++I  +     
Sbjct: 423 IHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSER 482

Query: 432 ARNALIFFNKMK-----------DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
             +AL+  +KM+             S+ PN +T + +L +C+    + +G+EI A     
Sbjct: 483 HEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN 542

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            N+         +VD++ +   L+ + ++ + +P   NV+ W  ++ A  +HG
Sbjct: 543 -NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR-NVITWNVIVMAYGMHG 593



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 199/426 (46%), Gaps = 51/426 (11%)

Query: 52  LLLTSFSLPTTTPSSLYYALSIF-SQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLN 110
           L  T  S+     S++Y A S F SQ  +P   +    +R+   S+  + A+  ++ M+ 
Sbjct: 29  LRATPTSVTDDVASTVYGAPSKFISQSHSPEWWID--LLRSKVRSNLLREAVLTYIDMIV 86

Query: 111 EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPF-VQTGLVGMYGACGKIL 169
            G+  D F+FP +LKA+A  + +  G Q+H    K G+G D   V   LV +Y  CG   
Sbjct: 87  LGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFG 146

Query: 170 DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229
               +FD++S R+ V W+ +I        ++  L  F  M   +VEP    L  +  ACS
Sbjct: 147 AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACS 206

Query: 230 R---AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV 286
                  L  G+ VH +                           + KG  +  ++  LV 
Sbjct: 207 NFPMPEGLLMGKQVHAY--------------------------GLRKGELNSFIINTLV- 239

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346
             AM   Y + G++  ++++      +DL+ W+ ++S   +N    EAL+   EM + G+
Sbjct: 240 --AM---YGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGV 294

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLY------IDKNAFGGDLRVNNAIIDMYAKCGS 400
           +PD  T+ SV+ AC+HL +L   + +H Y      +D+N+F     V +A++DMY  C  
Sbjct: 295 EPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF-----VGSALVDMYCNCKQ 349

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLY 459
           + S   VF+ M  R +  W +MI  +A +     AL+ F +M++ + +  N  T  GV+ 
Sbjct: 350 VLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVP 409

Query: 460 ACSHAG 465
           AC  +G
Sbjct: 410 ACVRSG 415


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/724 (34%), Positives = 383/724 (52%), Gaps = 72/724 (9%)

Query: 70  ALSIFSQIP-APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           A  +F ++P     RV    +   + +   +  + +F KM   G+  D ++   +LK IA
Sbjct: 148 ARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIA 207

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
               + +G  VHGL  KLGFGS   V   L+  Y    +  DA L+FD M +RD++ W+ 
Sbjct: 208 GLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNS 267

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN- 247
           MI G   NGL+D+ + LF  M +   E D   L  +L AC+    L  G  VH + +   
Sbjct: 268 MISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTG 327

Query: 248 --------NVALDAHLQ----------------------STLITMYANCGCMDMAKGLFD 277
                   NV LD +                        + +IT Y   G  D   GLF 
Sbjct: 328 FISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQ 387

Query: 278 KVLL---------------------------------------KNLVVSTAMVSGYSRAG 298
           ++ L                                       K L V+ A++  Y + G
Sbjct: 388 EMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCG 447

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
            +E+A+LIFD +V KD+I W+ +I GY+ NN   EA  LF EM +  ++P+ VTM  ++ 
Sbjct: 448 NMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEM-LLQLRPNAVTMTCILP 506

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           A A L  L++ + +H Y  +  +  D  V NA+IDMY KCG+L  AR +F+R+  +N+IS
Sbjct: 507 AAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLIS 566

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           WT M+  + +HG  R+A+  F +M+   I P+  +F  +LYACSH+GL DEG   F +M 
Sbjct: 567 WTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMR 626

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
            E+ I P+ +HY CMVDL      L+EA E +++MP  P+  IW SL+  CR+H  ++LA
Sbjct: 627 KEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLA 686

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
           E  A+++ +L+P++ G  VLL+NIYA+ +RW+ V +L+  +  RG+ +   CS IE   +
Sbjct: 687 EEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGK 746

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           V+ F+  +R+H Q  +I E LNEV   ++  G+ P    AL+  ++    E +  HS KL
Sbjct: 747 VHVFIADNRNHPQGTRIAEFLNEVAKRMQEEGHDPKKKYALMGADNAVHGEALCGHSSKL 806

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+ +G+++  +   IR+ KN RVC  CH   K +SK+ +REI++RD  RFHH++ G CSC
Sbjct: 807 AVAFGVLNLSEGRLIRVTKNSRVCSHCHEAAKFISKMCSREIILRDSNRFHHFEQGRCSC 866

Query: 719 KDYW 722
           + YW
Sbjct: 867 RGYW 870



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 205/447 (45%), Gaps = 48/447 (10%)

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGL--GTKLGF-GSDPFVQTGLVGMYGACGKILDA 171
           +D  S+  +L+  +    L  G + H L   + LG  G D  +   LV MY  CG + +A
Sbjct: 89  VDDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENA 148

Query: 172 RLMFDKM-SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           R +FD+M    D+  W+ ++ GY + G   E + LF +M    V PD   +S +L   + 
Sbjct: 149 RRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAG 208

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV-LLKNLVVSTA 289
            G++  GE VH                                GL +K+       V  A
Sbjct: 209 LGSIEDGEVVH--------------------------------GLLEKLGFGSQCAVGNA 236

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
           +++ Y+++ + +DA L+FD M  +D+I W++MISG   N    +A++LF  M + G + D
Sbjct: 237 LMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELD 296

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
             T+LSV+ ACA L +L   + +H Y  K  F     + N ++DMY+ C    S  ++F 
Sbjct: 297 SATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFR 356

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            M ++NV+SWT+MI ++   G        F +M  E   P+       L+A +   L+  
Sbjct: 357 NMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKH 416

Query: 470 GREIFASMTNEYNIPPKYEHY----GCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
           G+ +       Y I    E        +++++ +   + EA +L+     + +++ W +L
Sbjct: 417 GKSVHG-----YAIRNGMEKVLAVTNALMEMYVKCGNMEEA-KLIFDGVVSKDMISWNTL 470

Query: 526 MAA-CRVHGEIELAEFAAKQLLQLDPD 551
           +    R +   E      + LLQL P+
Sbjct: 471 IGGYSRNNLANEAFSLFTEMLLQLRPN 497



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 164/359 (45%), Gaps = 55/359 (15%)

Query: 182 DIVPWS---VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
           D VP S   + I    ++G  +E L L     + +   D+     +L  CS   +L  G+
Sbjct: 57  DWVPTSDVNLHIQRLCRSGDLEEALGL-----LGSDGVDDRSYGAVLQLCSEVRSLEGGK 111

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
             H  +  +++  D                        D VL + LV+       Y + G
Sbjct: 112 RAHFLVRASSLGRDG----------------------MDNVLGQKLVLM------YLKCG 143

Query: 299 QVEDARLIFDQMVE-KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
            +E+AR +FD+M +  D+  W+A++SGYA+    +E + LF +M  CG++PD  T+  V+
Sbjct: 144 DLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVL 203

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
              A LG ++  + +H  ++K  FG    V NA++  YAK    + A  VF+ M  R+VI
Sbjct: 204 KCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVI 263

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI---- 473
           SW SMI+    +G    A+  F +M  E  + +  T + VL AC+   L+  GR +    
Sbjct: 264 SWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYS 323

Query: 474 ----FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
               F S T+  N+         ++D++   +  R   ++   M    NVV W +++ +
Sbjct: 324 VKTGFISQTSLANV---------LLDMYSNCSDWRSTNKIFRNM-VQKNVVSWTAMITS 372


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/669 (35%), Positives = 387/669 (57%), Gaps = 36/669 (5%)

Query: 86  NKFIRAISWSHRPKHALKVFLKM---LNEGLTIDR---FSFPPILKAIARAEGLLEGMQV 139
           N  + A      P+ AL++F +M   ++E  T +R    S   IL A A  + L +  ++
Sbjct: 222 NSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEI 281

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
           H    + G  +D FV   L+  Y  CG + DA  +F+ M ++D+V W+ M+ GY Q+G F
Sbjct: 282 HSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNF 341

Query: 200 DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDNNVALDAHLQST 258
                LFE M+  N+  D +  S +++  ++ G      +A  + I+D +         T
Sbjct: 342 GAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSV----T 397

Query: 259 LITMYANCGCMD-MAKGL------FDKVLLK------------NLVVSTAMVSGYSRAGQ 299
           +I++ + C  +  +++G+        K LL             +L+V  A++  YS+   
Sbjct: 398 IISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRS 457

Query: 300 VEDARLIFDQMV--EKDLICWSAMISGYAENNHPQEALKLFNEM--QVCGMKPDKVTMLS 355
            + AR IFD +   E++++ W+ MI GYA+     +ALK+F+EM  +   + P+  T+  
Sbjct: 458 FKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISC 517

Query: 356 VISACAHLGVLDQAQRIHLYIDK-NAFGGDLR-VNNAIIDMYAKCGSLESAREVFERMRR 413
           ++ ACAHL  L   ++IH Y+ + + +   +  V N +IDMY+KCG +++AR VF+ M +
Sbjct: 518 ILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPK 577

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           RN +SWTSM++ + +HG  + AL  F+KM+     P+ ++F+ +LYACSH+G+VD+G   
Sbjct: 578 RNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNY 637

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           F  M  +Y++    EHY C++DL  R   L +A + ++ MP  P+ VIW +L++ACRVH 
Sbjct: 638 FDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHS 697

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
            +ELAE+A  +L+ +  ++DG+  L+SNIYA  +RW+DV  +R+ MK+ GI K   CS +
Sbjct: 698 NVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWV 757

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW 653
           +       F   DRSH  + +IY  L  +I  +K  GYVP+ + AL D++DEEK  ++  
Sbjct: 758 QGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSE 817

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HSEKLAL YGL+++     IRI KNLRVC DCH+    +SK+   EI++RD +RFHH+K+
Sbjct: 818 HSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKN 877

Query: 714 GVCSCKDYW 722
           G CSC  YW
Sbjct: 878 GSCSCGGYW 886



 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 190/598 (31%), Positives = 295/598 (49%), Gaps = 58/598 (9%)

Query: 14  PTSTA--ISSCSSLTHMKQTHAQILKL------------------SHSHHSQNSLLLKLL 53
           PT  A  +  C S+  ++Q H +I+                    SHS+ S  SL   ++
Sbjct: 31  PTHFASLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGVV 90

Query: 54  LTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGL 113
            +  +   T       ALS+  ++   P+   N  +R          A+ V  +ML  G 
Sbjct: 91  ASYLACGATKD-----ALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGT 145

Query: 114 TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
             D F+ P  LKA         G  +HGL    GF S+ FV   LV MY  CG + DA L
Sbjct: 146 KPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASL 205

Query: 174 MFDKMSYR---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKM------SNVEPDEMVLSKI 224
           +FD+++ +   D++ W+ ++  + +       L LF EM M      +N   D + +  I
Sbjct: 206 VFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNI 265

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L AC+    L   + +H + I N    DA + + LI  YA CG M+ A  +F+ +  K++
Sbjct: 266 LPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDV 325

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFNE 340
           V   AMV+GY+++G    A  +F+ M    +  D+I WSA+I+GYA+    QEAL  F +
Sbjct: 326 VSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQ 385

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF------------GGDLRVN 388
           M + G +P+ VT++S++SACA LG L Q   IH Y  K               G DL V 
Sbjct: 386 MILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVY 445

Query: 389 NAIIDMYAKCGSLESAREVFERM--RRRNVISWTSMINAFAIHGDARNALIFFNKM--KD 444
           NA+IDMY+KC S ++AR +F+ +  R RNV++WT MI  +A +GD+ +AL  F++M  K 
Sbjct: 446 NALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKP 505

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRANLL 503
            ++ PN  T   +L AC+H   +  G++I A +T  +   P  Y    C++D++ +   +
Sbjct: 506 YAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDV 565

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALVLL 559
             A  + ++MP   N V W S+M+   +HG  +  L  F   Q     PD    LVLL
Sbjct: 566 DTARNVFDSMP-KRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/621 (37%), Positives = 367/621 (59%), Gaps = 45/621 (7%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           ML  G + + F+FP  +K+ A     + G Q+H    K G   +PFVQT L+ MYG C  
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 168 ILDARLMFDK--MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           I +AR +FD+   S +  V ++ ++ GY  N    +V+ LF EM+   VE + + +  ++
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
             C   GNL  G  VH F +   + +D+ + + L+TMY                      
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYV--------------------- 159

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
                     ++G+++  R +FD+M  K LI W+AMI+GYA+N      L+L+ EM+  G
Sbjct: 160 ----------KSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKG 209

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
             PD +T++ V+S+CAHLG L   + +   ++   F  +  +NNA+++MYA+CG+L+ AR
Sbjct: 210 FCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKAR 269

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
           ++F+ M  ++V+SWT++I  + +HG    A+  F++M    I P+G  F+ VL ACSHAG
Sbjct: 270 DIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAG 329

Query: 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
           L ++G + F  M  +Y + P  EHY CMVDL GRA  L EA EL+E+M    +  +WG+L
Sbjct: 330 LTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGAL 389

Query: 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585
           + AC++H  +ELAE A +Q+++L+P + G  VLLSN+Y +    + +  +R  M++R + 
Sbjct: 390 LGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLK 449

Query: 586 KERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDE 645
           K+  CS +E    V+ F   DR+H QT++IY+KLNE+         V D+     +  D 
Sbjct: 450 KDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNEL------ENLVKDLDGCKKN--DH 501

Query: 646 EKREVIL----WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIV 701
           E+RE  L     HSEKLA+ + L++++K++ I I+KNLR+C DCH FIKLVSK+  R+ V
Sbjct: 502 ERREEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKNLRICGDCHLFIKLVSKIVDRQFV 561

Query: 702 IRDRTRFHHYKDGVCSCKDYW 722
           +RD TRFHH+K+G CSCK+YW
Sbjct: 562 VRDATRFHHFKNGFCSCKEYW 582



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 204/449 (45%), Gaps = 51/449 (11%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLT---HMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           L     P       AI SC++L+     KQ H  + K          LL   + TS    
Sbjct: 2   LRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFK-------TGCLLEPFVQTSLISM 54

Query: 61  TTTPSSLYYALSIFSQIPAPP--SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
               S +  A  +F + P     +   N  +   + + R K  + +F +M   G+ I+  
Sbjct: 55  YGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGV 114

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +   +++       L  GM VHG   K G   D  V   L+ MY   G+I   R +FD+M
Sbjct: 115 TMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEM 174

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
             + ++ W+ MI+GY QNGL + VL L++EM+     PD + L  +LS+C+  G LS G+
Sbjct: 175 PRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGK 234

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
            V   +     + +  L + L+ MYA CG +  A+ +FD + +K++V  TA++ GY   G
Sbjct: 235 EVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHG 294

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
           Q E A  +FD+M+                                 G+KPD    +SV+S
Sbjct: 295 QGEVAVGLFDEMIRG-------------------------------GIKPDGTAFVSVLS 323

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVN----NAIIDMYAKCGSLESAREVFERMR-R 413
           AC+H G+ ++    +  + +  +G  LR      + ++D+  + G L  ARE+ E M+ R
Sbjct: 324 ACSHAGLTNKGLD-YFGVMERKYG--LRPGAEHYSCMVDLLGRAGRLNEARELIESMQVR 380

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKM 442
            +   W +++ A  IH +   A + F ++
Sbjct: 381 ADGALWGALLGACKIHRNVELAELAFEQV 409


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/695 (34%), Positives = 385/695 (55%), Gaps = 56/695 (8%)

Query: 70   ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
            A  +F ++P P + + N+ I     S + +  +++F KM    L  +  +   +L+A  +
Sbjct: 728  ANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGK 787

Query: 130  AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR-------- 181
               L    Q+HG   + G  SD  +   L+ MY   GK+  AR +FD M  R        
Sbjct: 788  MGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSM 847

Query: 182  ---------------------------DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV 214
                                       DIV W+ ++ G+F +G  +EVLN+ + M+    
Sbjct: 848  ISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGF 907

Query: 215  EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
            +P+   ++ +L A S  G L+ G+  H +++ N    D ++ ++LI MY     +  A+ 
Sbjct: 908  KPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQA 967

Query: 275  LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM----VEKDLICWSAMISGYAENNH 330
            +FD +  +N+    ++VSGYS  G  EDA  + +QM    ++ DL+ W+ MISGYA    
Sbjct: 968  VFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYA---- 1023

Query: 331  PQEALKLFNEMQVCGMK---PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
                      M  C  K   P+  ++  ++ ACA L +L + + IH    +N F  D+ V
Sbjct: 1024 ----------MWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFV 1073

Query: 388  NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
              A+IDMY+K  SL++A +VF R++ + + SW  MI  FAI G  + A+  FN+M+   +
Sbjct: 1074 ATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGV 1133

Query: 448  DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
             P+ +TF  +L AC ++GL+ EG + F SM  +Y I P+ EHY CMVDL GRA  L EA 
Sbjct: 1134 GPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAW 1193

Query: 508  ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
            +L+ TMP  P+  IWG+L+ +CR+H  +  AE AAK L +L+P++    +L+ N+Y+   
Sbjct: 1194 DLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFN 1253

Query: 568  RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627
            RW+D+  LR+ M   G+   +  S I++N  V+ F + ++ H    +IY +L +++SE+K
Sbjct: 1254 RWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMK 1313

Query: 628  PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHN 687
              GYVPD++    ++++ EK++++L H+EKLA+ YGLI  K    IR++KN R+C DCH+
Sbjct: 1314 KLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHS 1373

Query: 688  FIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              K +S V ARE+ +RD  RFHH+++G CSC D+W
Sbjct: 1374 AAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/512 (25%), Positives = 248/512 (48%), Gaps = 62/512 (12%)

Query: 86   NKFIRAISWSHRPKH-ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
            N F+     S    H  L+VF ++  +G+  D   +   LK   R   +  GM++HG   
Sbjct: 642  NSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLI 701

Query: 145  KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
            K GF  D +++  L+  YG C  +  A  +F +M   + + W+  I    Q+    + + 
Sbjct: 702  KRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVE 761

Query: 205  LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
            LF +M+ S ++ +   + ++L AC + G L+  + +H ++    +  D  L + LI+MY+
Sbjct: 762  LFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYS 821

Query: 265  NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM----VEKDLICWSA 320
              G +++A+ +FD +  +N     +M+S Y+  G + DA  +F ++    ++ D++ W+ 
Sbjct: 822  KNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNC 881

Query: 321  MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
            ++SG+  + + +E L +   MQ  G KP+  +M SV+ A + LG L+  +  H Y+ +N 
Sbjct: 882  LLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNG 941

Query: 381  FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
            F  D+ V  ++IDMY K  SL SA+ VF+ M+ RN+ +W S+++ ++  G   +AL   N
Sbjct: 942  FDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLN 1001

Query: 441  KMKDESIDPNGVTFIG------------------------VLYACSHAGLVDEGREIF-- 474
            +M+ E I P+ VT+ G                        +L AC+   L+ +G+EI   
Sbjct: 1002 QMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCL 1061

Query: 475  -----------------------ASMTNEYNIPPKYEH-----YGCMVDLFGRANLLREA 506
                                   +S+ N + +  + ++     + CM+  F    L +EA
Sbjct: 1062 SIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEA 1121

Query: 507  LELVETMP---FAPNVVIWGSLMAACRVHGEI 535
            + +   M      P+ + + +L++AC+  G I
Sbjct: 1122 ISVFNEMQKVGVGPDAITFTALLSACKNSGLI 1153



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 176/421 (41%), Gaps = 77/421 (18%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN-GLFDEVLNLFEEMKMSNVEP 216
           L+  Y   G    A ++F     R+ + W+  ++ +  + G    VL +F+E+    V  
Sbjct: 613 LISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVF 672

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           D  V S  L  C+R  ++  G  +H  +I     LD +L+  L+  Y  C          
Sbjct: 673 DSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCW--------- 723

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
                           G  +A QV      F +M   + + W+  I    ++   Q+ ++
Sbjct: 724 ----------------GLEKANQV------FHEMPNPEALLWNEAIILNLQSEKLQKGVE 761

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           LF +MQ   +K +  T++ V+ AC  +G L+ A++IH Y+ +     D+ + N +I MY+
Sbjct: 762 LFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYS 821

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFA----------------------------- 427
           K G LE AR VF+ M  RN  SW SMI+++A                             
Sbjct: 822 KNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNC 881

Query: 428 ------IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
                 +HG     L    +M+ E   PN  +   VL A S  G ++ G+E     T+ Y
Sbjct: 882 LLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKE-----THGY 936

Query: 482 NIPPKYE---HYGC-MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537
            +   ++   + G  ++D++ + + L  A  + + M    N+  W SL++     G  E 
Sbjct: 937 VLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMK-NRNIFAWNSLVSGYSFKGMFED 995

Query: 538 A 538
           A
Sbjct: 996 A 996


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 273/764 (35%), Positives = 412/764 (53%), Gaps = 81/764 (10%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSF 57
           M   + P+   T P    + +C++L  +    Q HA + +L  +    +      L+ ++
Sbjct: 43  MQAHAVPSNNFTFPA--LLKACAALRRLLPTLQVHAYLTRLGLA---ADRFSAAALVDAY 97

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPSRVSN--KFIRAISWSHRPKHALKVFLKML------ 109
                     YYA  +F ++P     V +    I A S +     A K F +M       
Sbjct: 98  G----KCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWD 153

Query: 110 -NEGLTIDRFSFPPILKAIARAEG---LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC 165
            +E   +D  S   ++ A A   G   L  G  VHGL  K GFG    +   +V MY AC
Sbjct: 154 GSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSAC 213

Query: 166 GKILDARLMFDKM--SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM---KMSNVEPDEMV 220
             +  A  +F+ +    RD+V W+ +I G+  NG  +  L  FE+M     S VEP+ + 
Sbjct: 214 KDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVT 273

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           +  +L +C+  G +     VHE+I   + +L                           ++
Sbjct: 274 VIALLKSCAELGCVETSSWVHEYISSRHSSL---------------------------LV 306

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            K++VV TA++  ++R G +  AR IFD +  K+++CWSAMI+GY + + P+EAL+LF +
Sbjct: 307 AKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQ 366

Query: 341 MQVCG------MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
           M + G      +KP+ VT++SVI+AC+ LG    A  IH Y        D R+ +A+IDM
Sbjct: 367 MLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDM 426

Query: 395 YAKCGSLESAREVFERM--RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
            AKCG +E  R+VF  M    R V+SW+SMI A  IHG+ + AL  F++M+    +PN +
Sbjct: 427 CAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEI 486

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
           T+I VL ACSHAGLV++G+  F SM  +Y + P  +HY C+VDL GRA  L EA  ++  
Sbjct: 487 TYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILN 546

Query: 513 MPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572
           MP   ++ +WGSL+AAC +HG  +L E   K++L LD +  G  VLL+N+Y    RW DV
Sbjct: 547 MPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDV 606

Query: 573 GELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL-KPAGY 631
             +R  ++  G+ K    S IE+ NEVY F+  DRSH +++ IY++L+ +   + K A Y
Sbjct: 607 VRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAKY 666

Query: 632 VPDIHSALVDLEDEEKREVIL---WHSEKLALCYGLI----------SSKKDSCIRIVKN 678
           V +     +++ED +   +IL   +HSE+LA+ +GLI          S +  + IRI KN
Sbjct: 667 VTETG---LNVEDGDIAGLILRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRITKN 723

Query: 679 LRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LRVC DCH + KLVSKV  RE+++RD  RFHH++DG CSC DYW
Sbjct: 724 LRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 219/469 (46%), Gaps = 62/469 (13%)

Query: 95  SHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFV 154
           +  P+ AL  F +M    +  + F+FP +LKA A    LL  +QVH   T+LG  +D F 
Sbjct: 30  TQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFS 89

Query: 155 QTGLVGMYGACGKILDARLMFDKM--SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK-M 211
              LV  YG CG    A  +FD+M     D+V W+ +I  Y  NG  DE    F  M+ M
Sbjct: 90  AAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWM 149

Query: 212 SNVEPDE------MVLSKILSACS---RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
              +  E      + L  ++SAC+    +  L  G AVH  ++     +  HL ++++ M
Sbjct: 150 RGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHM 209

Query: 263 YANCGCMDMAKGLFDKVLL--KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
           Y+ C  +  A  +F+ + +  +++V   +++SG++  G+ E A   F+ MV +       
Sbjct: 210 YSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEG------ 263

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN- 379
                                    ++P++VT+++++ +CA LG ++ +  +H YI    
Sbjct: 264 ----------------------TSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRH 301

Query: 380 ---AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
                  D+ V  A++DM+A+CG+L  ARE+F+ +  +NV+ W++MI  +        AL
Sbjct: 302 SSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEAL 361

Query: 437 IFFNKMKDES------IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH- 489
             F +M  E       + PN VT + V+ ACS  G         ASM ++Y +    +  
Sbjct: 362 RLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRS-----ASMIHKYAVATGLDQD 416

Query: 490 ---YGCMVDLFGRANLLREALELVETMPFAPNVVI-WGSLMAACRVHGE 534
                 ++D+  +   +    ++   M  +   V+ W S++ A  +HGE
Sbjct: 417 ARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGE 465



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 110/242 (45%), Gaps = 21/242 (8%)

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           KD   W+++I+  A  N PQ AL  F  MQ   +  +  T  +++ ACA L  L    ++
Sbjct: 16  KDTFHWNSLIAKNATQN-PQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQV 74

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR--NVISWTSMINAFAIHG 430
           H Y+ +     D     A++D Y KCG    A +VF+ M     +V+SWT++I+A++ +G
Sbjct: 75  HAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNG 134

Query: 431 DARNALIFFNKMK-------DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
               A   F +M+        E    + V+   ++ AC+    V  G       +  + +
Sbjct: 135 CVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACA----VGCGSNCLRRGSAVHGL 190

Query: 484 PPKY-----EHYG-CMVDLFGRANLLREALELVETMPFAP-NVVIWGSLMAACRVHGEIE 536
             KY      H G  MV ++     +  A  +   +P    +VV W SL++   ++GE E
Sbjct: 191 VVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAE 250

Query: 537 LA 538
            A
Sbjct: 251 RA 252


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/565 (39%), Positives = 348/565 (61%), Gaps = 35/565 (6%)

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-NVEPDEM 219
           MY  CG  +D R +FD+MS +D+V W+ MI  Y Q    +E L LF++M+    +  D +
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
            +  + SA  + G++     VH +                                F K 
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYA-------------------------------FRKS 89

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
           L++ L V  ++++ +++ G  E ARL+FD M+E+D+I W++M+SGY +N    EAL LF+
Sbjct: 90  LIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNGQATEALLLFD 149

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           EM+    +P  VT L ++SACA+LG     ++ H +I  +    D  ++NA++DMYAKCG
Sbjct: 150 EMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCG 209

Query: 400 SLESAREVFERM--RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
            LE A ++F  +    RN  SW  +I+ + +HG  + AL  F++M++E ++PN  TF  +
Sbjct: 210 DLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSI 269

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L ACSHAGL+DEGR+ FA M    ++  + +H+ C+VD+ GRA LL+EA +L++ MP  P
Sbjct: 270 LSACSHAGLIDEGRKCFAEM-KRLSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPP 328

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
           +  +WG+L+ AC++HG +EL + AA  LLQL+P+H G  VL+SNIYA   +W++V +LR+
Sbjct: 329 SDGVWGALLLACKIHGNMELGKTAASNLLQLEPNHTGYYVLMSNIYAASNKWKEVWKLRQ 388

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            MK +G+ K  A S IE   ++  F TAD+ +    ++Y+K+  +  E+K AGYVPD+  
Sbjct: 389 DMKNKGLKKPAAFSMIEYGKDILGFHTADQENPYRHEVYKKMESLAIEMKMAGYVPDLSC 448

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
           AL D+E+E+K  ++ +HSEKLA+ +G++       IR+ KNLRVC DCH+  K +S +Y 
Sbjct: 449 ALHDVEEEDKERMLNYHSEKLAVAFGVLKIDPGMVIRVTKNLRVCNDCHSAFKYISHIYQ 508

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           R+I++RD  RFHH++ G CSCKDYW
Sbjct: 509 RKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 174/363 (47%), Gaps = 35/363 (9%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPILKAIARAE 131
           IF ++           I A   + +P+ AL +F KM  E GL  D  +   +  A+ +  
Sbjct: 14  IFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQLG 73

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
            +     VHG   +     +  V   ++ M+  CG    ARL+FD M  RD++ W+ M+ 
Sbjct: 74  DVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLS 133

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           GY QNG   E L LF+EM+ S+ +P  +    ++SAC+  G    G   H+FI+D+ + +
Sbjct: 134 GYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEI 193

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKV--LLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
           D +L + L+ MYA CG ++ A  LF+ +    +N      ++SGY   G           
Sbjct: 194 DTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHG----------- 242

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                               H +EAL+LF+ MQ  G++P+  T  S++SAC+H G++D+ 
Sbjct: 243 --------------------HGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEG 282

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAI 428
           ++    + + +   + + +  ++DM  + G L+ A ++ + M        W +++ A  I
Sbjct: 283 RKCFAEMKRLSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKI 342

Query: 429 HGD 431
           HG+
Sbjct: 343 HGN 345



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 13/214 (6%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKM--SYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
           D  +   L+ MY  CG +  A  +F+ +  + R+   W+V+I GY  +G   E L LF  
Sbjct: 194 DTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSR 253

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M+   VEP+    + ILSACS AG +  G      +   +V L+    + ++ M    G 
Sbjct: 254 MQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHACVVDMLGRAGL 313

Query: 269 MDMAKGLFDKVL------LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           +  A  L  ++       +   ++    + G    G+   + L+    +E +   +  ++
Sbjct: 314 LQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLL---QLEPNHTGYYVLM 370

Query: 323 SG-YAENNHPQEALKLFNEMQVCGM-KPDKVTML 354
           S  YA +N  +E  KL  +M+  G+ KP   +M+
Sbjct: 371 SNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMI 404


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/670 (35%), Positives = 389/670 (58%), Gaps = 38/670 (5%)

Query: 86  NKFIRAISWSHRPKHALKVFLKM---LNEGLTIDR---FSFPPILKAIARAEGLLEGMQV 139
           N  + A      P+ AL +F +M   ++E  T +R    S   IL A A  + L +  ++
Sbjct: 222 NSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEI 281

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
           H    + G  +D FV   L+  Y  CG + DA  +F+ M ++D+V W+ M+ GY Q+G F
Sbjct: 282 HSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKF 341

Query: 200 DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDNNVALDAHLQS- 257
                LF+ M+  N+  D +  S +++  ++ G   YG EA+  F     +   +   S 
Sbjct: 342 GAAFELFKNMRKENIPLDVITWSAVIAGYAQRG---YGQEALDTF--QQMILYGSEPNSV 396

Query: 258 TLITMYANCGCMD-MAKGL------FDKVLLK------------NLVVSTAMVSGYSRAG 298
           T+I++ + C  +  +++G+        K LL             +LVV  A++  YS+  
Sbjct: 397 TIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCR 456

Query: 299 QVEDARLIFDQMV--EKDLICWSAMISGYAENNHPQEALKLFNEM--QVCGMKPDKVTML 354
             + AR IF+ +   E++++ W+ MI GYA+     +ALKLF+EM  +   + P+  T+ 
Sbjct: 457 SFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTIS 516

Query: 355 SVISACAHLGVLDQAQRIHLYIDK-NAFGGDLR-VNNAIIDMYAKCGSLESAREVFERMR 412
            ++ ACAHL  L   ++IH Y+ + + +   +  V N +IDMY+KCG +++AR VF+ M 
Sbjct: 517 CILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMP 576

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
           +RN +SWTSM++ + +HG  + AL  F+KM+     P+ ++F+ +LYACSH+G+VD+G +
Sbjct: 577 KRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLD 636

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
            F  M ++Y +    +HY C++DL  R+  L +A + ++ MP  P+  IW +L++ACRVH
Sbjct: 637 YFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVH 696

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
             +ELAE+A  +L+ +  ++DG+  L+SNIYA  +RW+DV  +R+ MK+ GI K   CS 
Sbjct: 697 SNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSW 756

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652
           ++       F   DRSH  + +IY  L  +I  +K  GYVP+ + AL D++DEEK  ++ 
Sbjct: 757 VQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLT 816

Query: 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712
            HSEKLAL YGL+++     IRI KNLRVC DCH+    +SK+   EI++RD +RFHH+K
Sbjct: 817 EHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFK 876

Query: 713 DGVCSCKDYW 722
           +G CSC  YW
Sbjct: 877 NGSCSCGGYW 886



 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 189/598 (31%), Positives = 295/598 (49%), Gaps = 58/598 (9%)

Query: 14  PTSTA--ISSCSSLTHMKQTHAQILKL------------------SHSHHSQNSLLLKLL 53
           PT  A  +  C S+  ++Q H +I+                    SHS+ S  SL   ++
Sbjct: 31  PTHFASLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVV 90

Query: 54  LTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGL 113
            +  +   T+      ALS+  ++   P+   N  +RA     R   A+ V  +ML  G 
Sbjct: 91  ASYLACGATSD-----ALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGT 145

Query: 114 TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
             D F+ P  LKA         G   HGL    GF S+ FV   LV MY   G + DA L
Sbjct: 146 KPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASL 205

Query: 174 MFDKMSYR---DIVPWSVMIDGYFQNGLFDEVLNLFEEM------KMSNVEPDEMVLSKI 224
           +FD+++ +   D++ W+ ++  + +       L+LF EM      K +N   D + +  I
Sbjct: 206 VFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNI 265

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L AC+    L   + +H + I N    DA + + LI  YA CG M  A  +F+ +  K++
Sbjct: 266 LPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDV 325

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFNE 340
           V   AMV+GY+++G+   A  +F  M    +  D+I WSA+I+GYA+  + QEAL  F +
Sbjct: 326 VSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQ 385

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF------------GGDLRVN 388
           M + G +P+ VT++S++SACA LG L Q    H Y  K               G DL V+
Sbjct: 386 MILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVH 445

Query: 389 NAIIDMYAKCGSLESAREVFERM--RRRNVISWTSMINAFAIHGDARNALIFFNKM--KD 444
           NA+IDMY+KC S ++AR +F  +  R RNV++WT MI  +A +GD+ +AL  F++M  K 
Sbjct: 446 NALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKP 505

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRANLL 503
            ++ PN  T   +L AC+H   +  G++I A +T  +      Y    C++D++ +   +
Sbjct: 506 YAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDV 565

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALVLL 559
             A  + ++MP   N V W S+M+   +HG  +  L  F   Q     PD    LVLL
Sbjct: 566 DTARNVFDSMP-KRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 144/321 (44%), Gaps = 13/321 (4%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMKQTHAQILK---LSHSHHSQNSLLLKLLLTSFSLPT 61
           S+P     +   +A +S  +L+   +THA  LK   LS  +        + L+   +L  
Sbjct: 391 SEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALID 450

Query: 62  --TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHR--PKHALKVFLKMLNEGLTI-- 115
             +   S   A +IF+ IP     V    +    ++       ALK+F +M+++   +  
Sbjct: 451 MYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAP 510

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLG--FGSDPFVQTGLVGMYGACGKILDARL 173
           + ++   IL A A    L  G Q+H   T+      S  FV   L+ MY  CG +  AR 
Sbjct: 511 NAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARN 570

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +FD M  R+ V W+ M+ GY  +G   E L++F++M+ +   PD++    +L ACS +G 
Sbjct: 571 VFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGM 630

Query: 234 LSYGEAVHEFI-IDNNVALDAHLQSTLITMYANCGCMDMA-KGLFDKVLLKNLVVSTAMV 291
           +  G    + +  D  V   A   + +I + A  G +D A K + +  +  +  +  A++
Sbjct: 631 VDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALL 690

Query: 292 SGYSRAGQVEDARLIFDQMVE 312
           S       VE A    +++V 
Sbjct: 691 SACRVHSNVELAEYALNKLVS 711


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/568 (39%), Positives = 353/568 (62%), Gaps = 8/568 (1%)

Query: 155 QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV 214
            T L G     GK+ +A  +FDK+   D V +++M+  Y ++      L  F +M + ++
Sbjct: 108 NTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDI 167

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
                  + ++S  ++ G +     +   + + N        S +I+ Y   G ++ A+ 
Sbjct: 168 AS----WNTLISGFAQNGQMQKAFDLFSVMPEKNGVS----WSAMISGYVEHGDLEAAEE 219

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
           L+  V +K++VV TAM++GY + G+VE A  IF +M  K+L+ W++MI+GY EN   ++ 
Sbjct: 220 LYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDG 279

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
           LK+F  M    ++P+ +++ SV+  C++L  L   +++H  + K+    D     ++I M
Sbjct: 280 LKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISM 339

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y KCG L+SA ++F  M R++VI+W +MI+ +A HG  R AL  F+KM++ ++ P+ +TF
Sbjct: 340 YCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITF 399

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           + V+ AC+HAG VD G + F SM  E+ I  K  HY C++DL GRA  L EA+ L++ MP
Sbjct: 400 VAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMP 459

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
           F P+  I+G+L+ ACR+H  ++LAEFAA+ LL LDP      V L+NIYA   +W  V +
Sbjct: 460 FTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAK 519

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           +RK MKE  ++K    S IE+ +  +EF ++DR H +   I++KLNE+  ++K AGYVPD
Sbjct: 520 VRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPD 579

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
           +  AL D+E+E K +++LWHSEKLA+ +GL+ +   + IR+ KNLRVC DCH  IK +S 
Sbjct: 580 LEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISA 639

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +  REI++RD TRFHH+++G CSC DYW
Sbjct: 640 IEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 169/384 (44%), Gaps = 61/384 (15%)

Query: 55  TSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKM------ 108
           T  S  T     +  A  +F +IP P S   N  +     S+  K AL  F KM      
Sbjct: 109 TMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIA 168

Query: 109 ----LNEGLT--------IDRFSFPPILKAIARAEGLLEGMQVHG-------LGTKLGFG 149
               L  G           D FS  P    ++ +  ++ G   HG       L   +G  
Sbjct: 169 SWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWS-AMISGYVEHGDLEAAEELYKNVGMK 227

Query: 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
           S   V+T ++  Y   GK+  A  +F +M+ +++V W+ MI GY +N   ++ L +F+ M
Sbjct: 228 S-VVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM 286

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
             S V P+ + LS +L  CS    L  G  +H+ +  + ++ D    ++LI+MY  CG +
Sbjct: 287 IESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDL 346

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
           D A  LF ++  K+++   AM+SGY++ G                               
Sbjct: 347 DSAWKLFLEMPRKDVITWNAMISGYAQHGA------------------------------ 376

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV-- 387
             ++AL LF++M+   MKPD +T ++VI AC H G +D   + +    K  FG + +   
Sbjct: 377 -GRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQ-YFKSMKKEFGIEAKPVH 434

Query: 388 NNAIIDMYAKCGSLESAREVFERM 411
              +ID+  + G L+ A  + + M
Sbjct: 435 YTCVIDLLGRAGRLDEAVSLIKEM 458



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 154/332 (46%), Gaps = 60/332 (18%)

Query: 247 NNVALDAH---------LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR- 296
           NNV  + H         L  T+ +    C  ++ A+ +F+K+ ++  V    M+SGY++ 
Sbjct: 59  NNVTPNLHVDTASDVVSLNKTIASFVRACD-LESARNVFEKMSVRTTVTWNTMLSGYTKV 117

Query: 297 AGQVEDARLIFDQMVE-------------------------------KDLICWSAMISGY 325
           AG+V++A  +FD++ E                               KD+  W+ +ISG+
Sbjct: 118 AGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGF 177

Query: 326 AENNHPQEALKLFNEMQVCGMKPDK--VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           A+N   Q+A  LF+ M      P+K  V+  ++IS     G L+ A+ ++    KN    
Sbjct: 178 AQNGQMQKAFDLFSVM------PEKNGVSWSAMISGYVEHGDLEAAEELY----KNVGMK 227

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
            + V  A++  Y K G +E A  +F+RM  +N+++W SMI  +  +  A + L  F  M 
Sbjct: 228 SVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMI 287

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC--MVDLFGRAN 501
           +  + PN ++   VL  CS+   +  GR++   ++     P   +   C  ++ ++ +  
Sbjct: 288 ESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKS---PLSKDTTACTSLISMYCKCG 344

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            L  A +L   MP   +V+ W ++++    HG
Sbjct: 345 DLDSAWKLFLEMP-RKDVITWNAMISGYAQHG 375



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 22/180 (12%)

Query: 370 QRIHLYIDKNAFGGDLRVN--------NAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
           +RIHL +  N    +L V+        N  I  + +   LESAR VFE+M  R  ++W +
Sbjct: 51  RRIHL-VSPNNVTPNLHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNT 109

Query: 422 MINAFA-IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           M++ +  + G  + A   F+K+     +P+ V++  +L     +  V      F  M   
Sbjct: 110 MLSGYTKVAGKVKEAHELFDKIP----EPDSVSYNIMLVCYLRSYGVKAALAFFNKM--- 162

Query: 481 YNIPPK-YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
              P K    +  ++  F +   +++A +L   MP   N V W ++++    HG++E AE
Sbjct: 163 ---PVKDIASWNTLISGFAQNGQMQKAFDLFSVMP-EKNGVSWSAMISGYVEHGDLEAAE 218


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/591 (39%), Positives = 346/591 (58%), Gaps = 37/591 (6%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKI-LDARLMF----DKMSYRDIVPWSVMIDG 192
           Q+H    KLG  ++P V T    +          A  +F    D   Y D   ++ +I  
Sbjct: 47  QIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLY-DAFLFNTLIRA 105

Query: 193 YFQNGLF-DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           Y Q G   D+ L L+  M    + P++     +L AC+    L+ G+ VH  ++      
Sbjct: 106 YAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDC 165

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           D H+Q+T++ MY+ C                              AG +  AR +FD+M 
Sbjct: 166 DIHVQNTMVHMYSCC------------------------------AGGINSARKVFDEMP 195

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           + D + WSAMI GYA      EA+ LF EMQ+  + PD++TM+S++SAC  LG L+  + 
Sbjct: 196 KSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKW 255

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           I  YI+++     + V+NA+IDM+AKCG +  A ++F  M  + ++SWTS+I   A+HG 
Sbjct: 256 IEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGR 315

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
            + A   F +M    + P+ V FIG+L ACSH+GLV+ GRE F SM  +Y + PK EHYG
Sbjct: 316 GQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYG 375

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           CMVD++ R  L++EALE V  MP  PN VI  +L++ACR HGE +L E   K L++ +P 
Sbjct: 376 CMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPL 435

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
           H+   VLLSNIYAK   W+   ++R+ M+ +G+ K    + IE++NE+YEF+  D+SHKQ
Sbjct: 436 HESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQ 495

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS 671
             +IYE ++E+  E+K +GY P     L+D+ +E+K + +  HSEKLA+ +GL+ +   +
Sbjct: 496 HKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAFGLLRTPPGT 555

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            IRIVKNLRVC DCH+  K +SK+Y REI++RDR RFHH+K G CSC D+W
Sbjct: 556 PIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/447 (28%), Positives = 208/447 (46%), Gaps = 39/447 (8%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           + +C++L  + Q H  ILKL   +   N L+L    +  SL   T  +  +  S  +   
Sbjct: 36  LQACNALPKLTQIHTHILKLGLHN---NPLVLTKFASISSLIHATDYAASFLFSAEADTR 92

Query: 79  APPSRVSNKFIRAISWS-HRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
              + + N  IRA + + H    AL ++  ML++ +  ++F++P +LKA A  E L  G 
Sbjct: 93  LYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQ 152

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGAC-GKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
            VHG   K GF  D  VQ  +V MY  C G I  AR +FD+M   D V WS MI GY + 
Sbjct: 153 TVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARV 212

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           G   E + LF EM+M+ V PDE+ +  +LSAC+  G L  G+ +  +I  + +     + 
Sbjct: 213 GRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVS 272

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           + LI M+A CG +  A  LF  +  K +V  T+++ G +  G+                 
Sbjct: 273 NALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGR----------------- 315

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-IHLY 375
                          QEA  LF EM   G+ PD V  + ++SAC+H G++++ +      
Sbjct: 316 --------------GQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSM 361

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDAR- 433
           + K      +     ++DMY + G ++ A E    M    N +   ++++A   HG+ + 
Sbjct: 362 MKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKL 421

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYA 460
              I    MK E +  +    +  +YA
Sbjct: 422 GEKITKLLMKHEPLHESNYVLLSNIYA 448


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/596 (39%), Positives = 344/596 (57%), Gaps = 42/596 (7%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP--------WSVM 189
           Q+H    K G  ++P + T           I  A       S+    P        ++ +
Sbjct: 36  QIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSYDAFLFNTL 95

Query: 190 IDGYFQNGLFDEVLNLF---EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           I  Y Q    D   N F     M    V P++     +L  C+  G+L  G+ VH  ++ 
Sbjct: 96  IRAYSQTR--DSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCVVK 153

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
                D H+ +TLI MY   G                                 E A  +
Sbjct: 154 FGFEEDVHVLNTLIHMYCCLG-----------------------------EDGFEFAEKV 184

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           FD   + D + WSAMI+G+        A+ LF EMQV G+ PD++TM+SV+SACA LG L
Sbjct: 185 FDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGAL 244

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           +  + +  Y++K      + + NA+IDM+AKCG+++ A ++F +M  R ++SWTS+I   
Sbjct: 245 ELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGL 304

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           A+HG   +A+  F++M +  I P+ V FIGVL ACSH+GLVD+GR  F SM   ++I PK
Sbjct: 305 AMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPK 364

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            EHYGCMVDL  R   ++EA E V+ MPF PN +IW +++ AC   GE++L E  +K+L+
Sbjct: 365 VEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELI 424

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           + +P H+   VLLSNIYAK ++W+   ++R+ M  RG+ K    + IE+NNE+YEF+  D
Sbjct: 425 KSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGD 484

Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS 666
           +SH Q  +IYE ++E+  E+K AGYVP     L+D+++E+K + +  HSEKLA+ + L++
Sbjct: 485 KSHDQYKEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLN 544

Query: 667 SKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +   + IRIVKNLRVCEDCH+  K +SKVY REIV+RDR RFHH+K+G+CSC+D+W
Sbjct: 545 TPPGTSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 212/445 (47%), Gaps = 53/445 (11%)

Query: 4   LSQPTKPLTLPTSTAI--SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           ++ P   LT  T   +  S C++L+ + Q HA ILK       QN+    L+LT F+  +
Sbjct: 8   INTPKTRLTEQTILTLLNSHCNTLSKLTQIHAFILKTG----LQNN---PLILTKFTSTS 60

Query: 62  TTPSSLYYALSIF------SQIPAPP--SRVSNKFIRAISWSHRPKHALKVFLK-MLNEG 112
           +  +S++YA S        +  P P   + + N  IRA S +   K    +F + ML  G
Sbjct: 61  SNLNSIHYATSFLFPPSHTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYG 120

Query: 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK--ILD 170
           +T ++F+FP +LK  A    L  G  VHG   K GF  D  V   L+ MY   G+     
Sbjct: 121 VTPNKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEF 180

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           A  +FD     D V WS MI G+ + G     ++LF EM++  V PDE+ +  +LSAC+ 
Sbjct: 181 AEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACAD 240

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
            G L  G+ V  ++   N+     L + LI M+A CG +D A  LF ++  + +V  T++
Sbjct: 241 LGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSV 300

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           ++G +  G+  DA  +FD+MVE                                G+ PD 
Sbjct: 301 IAGLAMHGRGLDAVSLFDEMVEN-------------------------------GITPDD 329

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           V  + V+SAC+H G++D+ +     +++N +    +     ++D+  + G ++ A E  +
Sbjct: 330 VAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQ 389

Query: 410 RMR-RRNVISWTSMINAFAIHGDAR 433
           +M    N I W ++I A    G+ +
Sbjct: 390 KMPFEPNQIIWRTIITACHATGELK 414


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/602 (38%), Positives = 358/602 (59%), Gaps = 3/602 (0%)

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L+  AR +      ++H    K GF     +   L+ +YG CG I  A  +FD+M  RD 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           V W+ ++  + +  +    L++   M     ++PD  V + I+ ACS  G L  G+ VH 
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
             + +    D  ++S+LI MY  CG  D A+ +FD +L KN V  T+M+SGY+R+G+  +
Sbjct: 130 RFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCE 189

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK-PDKVTMLSVISACA 361
           A  +F Q   ++L  W+A+ISG  ++ H   +  LFNEM+  G+   D + + SV+  CA
Sbjct: 190 AMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCA 249

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
           +L +L+  ++IH  +    F   L ++NA++DMYAKC  + +A+++F RM R++VISWTS
Sbjct: 250 NLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTS 309

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           +I   A HG A  AL  +++M    I PN VTF+G+LYACSHAGLV  GRE+F SMT +Y
Sbjct: 310 IIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDY 369

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
           +I P  +HY C++DL  R+  L EA  L++ +PF P+   W SL++AC  H  +E+    
Sbjct: 370 SINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRI 429

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
           A ++L L P+     +LLSN+YA  + W  V ++RK M    + KE   S I+   +   
Sbjct: 430 ADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQV 489

Query: 602 FLTADR-SHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
           F   +   H   ++I   L ++ +E++  GYVP+    L D+E +EK + + WHSE+LA+
Sbjct: 490 FHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAV 549

Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
            YGL+ +   + IRIVKNLR+C DCHN +K +S +  REI++RD TR+HH+K+G CSC D
Sbjct: 550 AYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCND 609

Query: 721 YW 722
           +W
Sbjct: 610 FW 611



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 235/473 (49%), Gaps = 33/473 (6%)

Query: 30  QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFI 89
           + H+QI+K   +   ++SLL   LL  +      P     AL +F ++P          +
Sbjct: 24  ELHSQIIK---AGFDKSSLLSNTLLDVYGKCGLIPQ----ALQLFDEMPNRDHVSWASIL 76

Query: 90  RAISWSHRPKHALKVFLKML-NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148
            A + +  P+  L +   M  ++GL  D F F  I++A +    L  G QVH       F
Sbjct: 77  TAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFF 136

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
             D  V++ L+ MY  CG+  DAR +FD + +++ V W+ MI GY ++G   E ++LF +
Sbjct: 137 CDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQ 196

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV------ALDAHLQSTLITM 262
             + N+     ++S ++ +         G  ++ F + N +       +D  + S+++  
Sbjct: 197 APVRNLFSWTALISGLIQS---------GHGIYSFSLFNEMRREGIDIVDPLVLSSVVGG 247

Query: 263 YANCGCMDMAKGLFDKVLLKN----LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
            AN   +++ K +   V+       L +S A+V  Y++   +  A+ IF +M  KD+I W
Sbjct: 248 CANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISW 307

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +++I G A++   +EAL L++EM +  +KP++VT + ++ AC+H G++ + + +   +  
Sbjct: 308 TSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTT 367

Query: 379 N-AFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNAL 436
           + +    L+    ++D+ ++ G L+ A  + +++  + +  +W S+++A   H +    +
Sbjct: 368 DYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGV 427

Query: 437 IFFNKMKD-ESIDPNGVTFIGVLYACSHA-GLVDEGREIFASMTNEYNIPPKY 487
              +++ D +  DP+    +  +YA +   G V + R++ +SM  E    P Y
Sbjct: 428 RIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSM--EVRKEPGY 478



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 80/177 (45%), Gaps = 3/177 (1%)

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
            L  +  CA       A  +H  I K  F     ++N ++D+Y KCG +  A ++F+ M 
Sbjct: 6   FLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMP 65

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDEGR 471
            R+ +SW S++ A       R  L   N M   + + P+   F  ++ ACS  G +  G+
Sbjct: 66  NRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGK 125

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           ++ A     +    +      ++D++ +     +A  + +++ F  N V W S+++ 
Sbjct: 126 QVHARFMLSFFCDDEVVK-SSLIDMYTKCGQPDDARAVFDSILFK-NSVSWTSMISG 180


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/606 (38%), Positives = 356/606 (58%), Gaps = 39/606 (6%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG---MYGACGKILDARLMFDKMS 179
           +L  + +   L E  Q+     K    +D  + T L+           +  A  +F+ + 
Sbjct: 29  LLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQLFEAIP 88

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
             DIV ++ M  GY ++    + ++LF +    N+ PD+     +L AC  A     G+ 
Sbjct: 89  QPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQGKQ 148

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H   I   +  + ++  TLI MYA C                                 
Sbjct: 149 LHCLAIKLGLNENPYVCPTLINMYAGCN-------------------------------D 177

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           V+ A+ +FD+++E  ++ ++A+I+GYA ++ P EAL LF ++Q   +KP+ VT+LSV+S+
Sbjct: 178 VDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSS 237

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           CA LG LD  + IH Y+ KN     ++VN A+IDMYAKCGSL+ A  VFE M  R+  +W
Sbjct: 238 CALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAW 297

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           ++MI A+A+HG  ++ +  F +M    + P+ +TF+G+LYACSH GLVDEG   F SM+ 
Sbjct: 298 SAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSE 357

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
            Y I P  +HYGCMVDL GRA LL EA + ++ +P  P  ++W +L+++C  HG +ELA+
Sbjct: 358 VYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAK 417

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
               Q+L+LD  H G  V+LSN+ A+  +W+DV  LRK M  +G +K   CS IE++N V
Sbjct: 418 QVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVV 477

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV---DLEDEEKREVILWHSE 656
           +EF + D  H  +  ++  L+E++ ELK  GYVPD  ++LV   D+EDEEK   + +HSE
Sbjct: 478 HEFFSGDGVHYVSTALHRALDELVKELKSVGYVPD--TSLVVHPDMEDEEKEITLRYHSE 535

Query: 657 KLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVC 716
           KLA+ +GL+++   + IR+VKNLRVC DCH+  KL+S +  REI++RD  RFHH+KDG C
Sbjct: 536 KLAISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKC 595

Query: 717 SCKDYW 722
           SC DYW
Sbjct: 596 SCGDYW 601



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/461 (27%), Positives = 232/461 (50%), Gaps = 46/461 (9%)

Query: 12  TLPTS--TAISSCSSLTHMKQTHAQILKLSHSHHSQNSL--LLKLLLTSFSLPTTTPSSL 67
           T P+S  + +  C+SL  +KQ  A  +K     H QN L  L KL+ +    PTT  +S+
Sbjct: 24  TYPSSLLSCLPKCTSLKELKQIQAFSIKT----HLQNDLQILTKLINSCTQNPTT--ASM 77

Query: 68  YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
            YA  +F  IP P   + N   R  S S+ P  A+ +F+K LN  L  D ++FP +LKA 
Sbjct: 78  DYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKAC 137

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
             A+   +G Q+H L  KLG   +P+V   L+ MY  C  +  A+ +FD++    +V ++
Sbjct: 138 VVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYN 197

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
            +I GY ++   +E L+LF +++   ++P+++ +  +LS+C+  G L  G+ +HE++  N
Sbjct: 198 AIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKN 257

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
            +     + + LI MYA CG +D A  +F+ + +++    +AM+  Y+  GQ +D     
Sbjct: 258 GLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQD----- 312

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
                                      + +F EM    ++PD++T L ++ AC+H G++D
Sbjct: 313 --------------------------VMSMFEEMARAKVQPDEITFLGLLYACSHTGLVD 346

Query: 368 QAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMIN 424
           +  R + Y     +G    ++    ++D+  + G L  A +  + +  +   I W ++++
Sbjct: 347 EGFR-YFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLS 405

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
           + + HG+   A    N++  E  D +G  ++ +   C+ AG
Sbjct: 406 SCSSHGNLELAKQVMNQIL-ELDDSHGGDYVILSNLCARAG 445


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/596 (39%), Positives = 362/596 (60%), Gaps = 14/596 (2%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP----WSVMIDGY 193
           Q+H         S+  +   L+  Y       +AR++FD   Y    P    W+VMI  Y
Sbjct: 92  QIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILFDH--YPSPSPPIKLWNVMIRTY 149

Query: 194 FQNGLFDEVLNLFEEMKMSN----VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
            +     E ++LF  M   +    V PDE   + ++++CS   +L YGE VH  ++ +  
Sbjct: 150 SKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGF 209

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             + ++ +++I M +    M+ A+ +F+++  +++   T+++ GY++ G+++ A  +F+ 
Sbjct: 210 ESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNM 269

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG--MKPDKVTMLSVISACAHLGVLD 367
           M  ++ + W+ MISG+       EAL  F  M +C   + P++  ++ V+SACAHLG LD
Sbjct: 270 MPVRNDVSWAVMISGFLGCGRYPEALTFFCNM-LCDDRVNPNEAVLVCVLSACAHLGALD 328

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           Q   IHLYIDK        ++ A+IDMYAKCG ++ A  VF  + +R+V+S+TSMI+  +
Sbjct: 329 QGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLS 388

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            HG  ++AL  F +M DE++ PN +T +GVL  CSH+GLV+EG  I A+M + + I PK 
Sbjct: 389 YHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKI 448

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
           EHYGC +DL GRA  L  ALE+V+TMP  P++VIW +L++A R+H  + L E     + Q
Sbjct: 449 EHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQ 508

Query: 548 L-DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           L   DH+G  VLLSN+YA   RW+ V E+RK M +R       CS IE+N  V+EF  AD
Sbjct: 509 LKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRVAD 568

Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS 666
           + H Q  +I  KLNE++  L   GY  +      DL +EEK + + WHSEKLA+ +GL+S
Sbjct: 569 QLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKEQAVAWHSEKLAIAFGLMS 628

Query: 667 SKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           ++  + IRIVKNLR CEDCH+ +K +S+VY REIV+RDR+RFH + +G CSCKD+W
Sbjct: 629 TEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIEGDCSCKDFW 684



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 223/474 (47%), Gaps = 86/474 (18%)

Query: 3   TLSQPTKPLT--LPT----STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTS 56
           ++S PT P+   LP     S  ++    L+ ++Q HAQ++  + S    N+ L   L+  
Sbjct: 59  SISIPTNPIPIDLPNPQTFSLLLNQRPKLSPLQQIHAQVVTQALS---SNASLTASLIHC 115

Query: 57  FSLPTTTPSSLYYALSIFSQIPAP--PSRVSNKFIRAISWSHRPKHALKVFLKMLN-EG- 112
           +      P+    A  +F   P+P  P ++ N  IR  S     +  + +FL+ML  +G 
Sbjct: 116 YLCAKNHPN----ARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGP 171

Query: 113 --LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD 170
             +  D ++F  ++ + +    L+ G  VHG+  K GF S+ +V   ++ M     ++ D
Sbjct: 172 MQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMED 231

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN----------------- 213
           AR +F++MS RD+  W+ ++ GY ++G  D    LF  M + N                 
Sbjct: 232 ARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRY 291

Query: 214 ---------------VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
                          V P+E VL  +LSAC+  G L  G  +H +I    +   +++ + 
Sbjct: 292 PEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTA 351

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           LI MYA CG +D A  +F+ +  ++++  T+M+SG S  G  +DA  +F QM++++++  
Sbjct: 352 LIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVM-- 409

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
                                        P+++T+L V++ C+H G++++   I L   +
Sbjct: 410 -----------------------------PNEITILGVLNGCSHSGLVEEGSSI-LANME 439

Query: 379 NAFGGDLRVNN--AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIH 429
           + +G   ++ +    ID+  + G LE A EV + M    +++ W ++++A  IH
Sbjct: 440 SLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIH 493


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/683 (36%), Positives = 392/683 (57%), Gaps = 44/683 (6%)

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWS----HRPKHALKVFLKMLNEGLTIDRFS 119
           P  L YAL +F ++P P + + +  +RA S +    HRP     +F +M   G+  D F+
Sbjct: 50  PLHLRYALHLFDRMP-PSTFLFDTALRACSRAGSDPHRP---FLLFRRMRRAGVRPDGFT 105

Query: 120 FPPILKAIA---RAEGLLEGMQVHGLGTKLGFGSD-PFVQTGLVGMYGACGKILDARLMF 175
           F  + K  +   R   LL    +H    +    S  PFV   L+ MY   G   DAR  F
Sbjct: 106 FHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAF 165

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLF-------------------------------DEVLN 204
           D++  +D V W+++I G  + G+                                 E + 
Sbjct: 166 DEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVG 225

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
            F+ M    + PDE+ +  +LSAC++  +L  G ++H  + +  +    +L   LI MYA
Sbjct: 226 CFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYA 285

Query: 265 NCGCMDMAKGLFDKVLLKNLVVS-TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
            CG    A+ +FD +       S  A++ GY + G V+ AR +FD+M  +D+I +++M++
Sbjct: 286 KCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMT 345

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           GY  +   +EAL LF  M+   ++ D  T++++++ACA LG L Q + +H  I++     
Sbjct: 346 GYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEA 405

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
           D+ +  A++DMY KCG ++ A  VF+RM +R+V +WT+MI   A +G  + AL  F +M+
Sbjct: 406 DIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMR 465

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
            +   PN V++I VL ACSH+ L++EGR  F  M   YNI P+ EHYGCM+DL GR+ LL
Sbjct: 466 CDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLL 525

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563
            EA++LV+TMP  PN VIW S+++ACRVH  I+LA+ AA+ LL+L+PD DG  V L NIY
Sbjct: 526 DEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIY 585

Query: 564 AKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVI 623
              ++W++  ++R  M+ER + K    S I +  +V++F+ +D+SH +  +I   L E+ 
Sbjct: 586 IDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEIS 645

Query: 624 SELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCE 683
             LK  GY P      VD+++EEK + +L HSEKLA+ +GLI+   +  + I KNLRVCE
Sbjct: 646 HRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCE 705

Query: 684 DCHNFIKLVSKVYAREIVIRDRT 706
           DCH+ IKL+S+++ REI++RDR+
Sbjct: 706 DCHSAIKLISRLWNREIIVRDRS 728


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/625 (37%), Positives = 366/625 (58%), Gaps = 35/625 (5%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           K AL++ L+M   G   D  +   IL A+A  + L  G  +HG   + GF S   V   L
Sbjct: 228 KRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNAL 287

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + MY  CG    ARL+F  M  + +V W+ MIDG  QNG  +E    F +M      P  
Sbjct: 288 LDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTR 347

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           + +  +L AC+  G+L  G  VH+                                L DK
Sbjct: 348 VTMMGVLLACANLGDLERGWFVHK--------------------------------LLDK 375

Query: 279 VLL-KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
           + L  N+ V  +++S YS+  +V+ A  IF+ + EK  + W+AMI GYA+N   +EAL L
Sbjct: 376 LKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNL 434

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F  MQ  G+K D  T++ VI+A A   V  QA+ IH    +     ++ V+ A++DMYAK
Sbjct: 435 FCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAK 494

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CG++++AR++F+ M+ R+VI+W +MI+ +  HG  +  L  FN+M+  ++ PN +TF+ V
Sbjct: 495 CGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSV 554

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           + ACSH+G V+EG  +F SM  +Y + P  +HY  MVDL GRA  L +A   ++ MP  P
Sbjct: 555 ISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKP 614

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
            + + G+++ AC++H  +EL E AA++L +LDPD  G  VLL+NIYA +  W  V ++R 
Sbjct: 615 GISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRT 674

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
           +M+++G+ K   CS +E+ NE++ F +   +H ++ +IY  L  +  E+K AGYVPD  S
Sbjct: 675 AMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDS 734

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
            + D+E++ K++++  HSE+LA+ +GL+++   + + I KNLRVC DCH+  K +S V  
Sbjct: 735 -IHDVEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTG 793

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           REI++RD  RFHH+K+G CSC DYW
Sbjct: 794 REIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 166/326 (50%), Gaps = 31/326 (9%)

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           K GF ++   QT ++ ++   G   +A  +F+ +  +  V + +M+ GY +N    + L 
Sbjct: 72  KNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALC 131

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
            F  M    V       + +L  C    +L  G  +H  II N                 
Sbjct: 132 FFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFE-------------- 177

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
                             NL V TA++S Y++  Q+++A  +F++M  KDL+ W+ +++G
Sbjct: 178 -----------------SNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAG 220

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           YA+N H + AL+L  +MQ  G KPD VT++S++ A A +  L   + IH Y  ++ F   
Sbjct: 221 YAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESL 280

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
           + V NA++DMY KCGS   AR VF+ MR + V+SW +MI+  A +G++  A   F KM D
Sbjct: 281 VNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLD 340

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEG 470
           E   P  VT +GVL AC++ G ++ G
Sbjct: 341 EGEVPTRVTMMGVLLACANLGDLERG 366



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 161/351 (45%), Gaps = 44/351 (12%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I   + +   + A   FLKML+EG    R +   +L A A    L  G  VH L  K
Sbjct: 316 NTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDK 375

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
           L   S+  V   L+ MY  C ++  A  +F+ +   + V W+ MI GY QNG   E LNL
Sbjct: 376 LKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEALNL 434

Query: 206 FEEMKMSNVEPDEMVLSKILSA-----CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
           F  M+   ++ D   L  +++A      +R     +G AV    +DNNV     + + L+
Sbjct: 435 FCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRA-CMDNNV----FVSTALV 489

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
            MYA CG +  A+ LFD +  ++++   AM+ GY   G                      
Sbjct: 490 DMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGV--------------------- 528

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
                      +E L LFNEMQ   +KP+ +T LSVISAC+H G +++   +   + ++ 
Sbjct: 529 ----------GKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDY 578

Query: 381 F-GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIH 429
           +    +   +A++D+  + G L+ A    + M  +  IS   +M+ A  IH
Sbjct: 579 YLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIH 629



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 129/262 (49%), Gaps = 18/262 (6%)

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
           +  T ++S + + G   +A  +F+ +  K  + +  M+ GYA+N+   +AL  F  M   
Sbjct: 80  LFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCD 139

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
            ++        ++  C     L + + IH  I  N F  +L V  A++ +YAKC  +++A
Sbjct: 140 EVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNA 199

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
            ++FERM+ ++++SWT+++  +A +G A+ AL    +M++    P+ VT + +L A +  
Sbjct: 200 YKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADM 259

Query: 465 GLVDEGREI--------FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
             +  GR I        F S+ N  N          ++D++ +    R A  + + M  +
Sbjct: 260 KALRIGRSIHGYAFRSGFESLVNVTN---------ALLDMYFKCGSARIARLVFKGMR-S 309

Query: 517 PNVVIWGSLMAACRVHGEIELA 538
             VV W +++  C  +GE E A
Sbjct: 310 KTVVSWNTMIDGCAQNGESEEA 331



 Score = 39.7 bits (91), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 11/175 (6%)

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           +I KN F  +      +I ++ K GS   A  VFE +  +  + +  M+  +A +    +
Sbjct: 69  FIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGD 128

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA-SMTNEYNIPPKYEHYGCM 493
           AL FF +M  + +      +  +L  C     + +GREI    +TN +           +
Sbjct: 129 ALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFE--SNLFVMTAV 186

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           + L+ +   +  A ++ E M    ++V W +L+A    +G        AK+ LQL
Sbjct: 187 MSLYAKCRQIDNAYKMFERMQH-KDLVSWTTLVAGYAQNGH-------AKRALQL 233


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/589 (38%), Positives = 357/589 (60%), Gaps = 2/589 (0%)

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
           ++ +  H + T+     DPFV   L+ +Y     I  A  +F      ++  ++ +IDG+
Sbjct: 43  VQSIHCHAIKTRTS--QDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGF 100

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
              G + + +NLF +M   +V  D   ++ +L AC     L  G+ VH  ++ + + LD 
Sbjct: 101 VSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDR 160

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
            +   L+ +Y  CG ++ A+ +FD +  +++V  T M+      G VE+A  +F++M  +
Sbjct: 161 SIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTR 220

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
           D +CW+ +I G   N      L++F EMQV G++P++VT + V+SACA LG L+  + IH
Sbjct: 221 DTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIH 280

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
            Y+ K     +  V  A+I+MY++CG ++ A+ +F+ +R ++V ++ SMI   A+HG + 
Sbjct: 281 AYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSI 340

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
            A+  F++M  E + PNG+TF+GVL ACSH GLVD G EIF SM   + I P+ EHYGCM
Sbjct: 341 EAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCM 400

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553
           VD+ GR   L EA + +  M    +  +  SL++AC++H  I + E  AK L +      
Sbjct: 401 VDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDS 460

Query: 554 GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTD 613
           G+ ++LSN YA   RW    E+R+ M++ GI+KE  CS IE+NN ++EF + D  H +  
Sbjct: 461 GSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERK 520

Query: 614 QIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCI 673
           +IY+KL E+    K  GY+P    AL D++DE+K   +  HSE+LA+CYGL+S++  + +
Sbjct: 521 RIYKKLEELNYLTKFEGYLPATEVALHDIDDEQKELALAVHSERLAICYGLVSTEAYTTL 580

Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           R+ KNLR+C+DCH  IKL++K+  R+IV+RDR RFHH+++G CSCKDYW
Sbjct: 581 RVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 185/417 (44%), Gaps = 70/417 (16%)

Query: 27  HMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSN 86
           H++  H   +K   +  SQ+  +   LL  +       + + +A+ +F     P   +  
Sbjct: 42  HVQSIHCHAIK---TRTSQDPFVAFELLRVY----CKVNYIDHAIKLFRCTQNPNVYLYT 94

Query: 87  KFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKL 146
             I           A+ +F +M+ + +  D ++   +LKA      L  G +VHGL  K 
Sbjct: 95  SLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKS 154

Query: 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP--------------------- 185
           G G D  +   LV +YG CG + DAR MFD M  RD+V                      
Sbjct: 155 GLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVF 214

Query: 186 ----------WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
                     W+++IDG  +NG F+  L +F EM++  VEP+E+    +LSAC++ G L 
Sbjct: 215 NEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALE 274

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G  +H ++    V ++  +   LI MY+ CG +D A+ LFD V +K++    +M+ G +
Sbjct: 275 LGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLA 334

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
             G+                                 EA++LF+EM    ++P+ +T + 
Sbjct: 335 LHGK-------------------------------SIEAVELFSEMLKERVRPNGITFVG 363

Query: 356 VISACAHLGVLDQAQRIHLYIDK-NAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           V++AC+H G++D    I   ++  +    ++     ++D+  + G LE A +   RM
Sbjct: 364 VLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRM 420


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/706 (35%), Positives = 380/706 (53%), Gaps = 40/706 (5%)

Query: 18   AISSCSSLTHMKQTHAQILKLSHSHHSQ-NSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
            A SS  +L   +Q HA   KL  + + +    LL L      + T        AL+ F +
Sbjct: 381  ACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIET--------ALNYFLE 432

Query: 77   IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
                   + N  + A       +++ ++F +M  E +  +++++P ILK   R   L  G
Sbjct: 433  TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELG 492

Query: 137  MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
             Q+H    K  F  + +V + L+ MY   GK+  A  +  + + +D+V W+ MI GY Q 
Sbjct: 493  EQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQY 552

Query: 197  GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
               D+ L  F +M    +  DE+ L+  +SAC+    L  G+ +H     +  + D   Q
Sbjct: 553  NFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQ 612

Query: 257  STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
            + L+T+Y+ C                               G +E+A L F+Q    D I
Sbjct: 613  NALVTLYSKC-------------------------------GNIEEAYLAFEQTEAGDNI 641

Query: 317  CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
             W+A++SG+ ++ + +EAL++F  M   G+  +  T  S + A +    + Q +++H  I
Sbjct: 642  AWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVI 701

Query: 377  DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
             K  +  +  V NAII MYAKCGS+  A++ F  +  +N +SW +MINA++ HG    AL
Sbjct: 702  TKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEAL 761

Query: 437  IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
              F++M   ++ PN VT +GVL ACSH GLVD+G E F SM  EY + PK EHY C+VD+
Sbjct: 762  DSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDM 821

Query: 497  FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
              RA LL  A + +  MP  P+ ++W +L++AC VH  +E+ EFAA  LL+L+P+     
Sbjct: 822  LTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATY 881

Query: 557  VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
            VLLSN+YA  ++W      R+ MKE+G+ KE   S IE+ N ++ F   D++H   D+I+
Sbjct: 882  VLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIH 941

Query: 617  EKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIV 676
            E   ++       GYV D  S L +L+ E+K   I  HSEKLA+ +GL+S      I ++
Sbjct: 942  EYFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMPINVM 1001

Query: 677  KNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            KNLRVC DCH++IK VSKV  REI++RD  RFHH++ G CSCKDYW
Sbjct: 1002 KNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 237/509 (46%), Gaps = 47/509 (9%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83
           SL   ++ H+QILKL   +   N+ L + LL  +         L  AL +F ++P     
Sbjct: 83  SLDEGRKLHSQILKLGFDN---NACLSEKLLDFYLFK----GDLDGALKVFDEMPERTIF 135

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM-QVHGL 142
             NK I+ ++          +F +M+NE +T +  +F  +L+A        + + Q+H  
Sbjct: 136 TWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHAR 195

Query: 143 GTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202
               G G    V   L+ +Y   G +  AR +FD +  +D   W  MI G  +N    E 
Sbjct: 196 IIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEA 255

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           + LF +M +  + P     S +LSAC +  +L  GE +H  ++    + D +        
Sbjct: 256 IRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY-------- 307

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
                                  V  A+VS Y   G +  A  IF  M ++D + ++ +I
Sbjct: 308 -----------------------VCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLI 344

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
           +G ++  + ++A++LF  MQ+ G++PD  T+ S++ AC+  G L   Q++H Y  K  F 
Sbjct: 345 NGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFA 404

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            + ++  A++++YAKC  +E+A   F      NV+ W  M+ A+ +  D RN+   F +M
Sbjct: 405 SNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM 464

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC--MVDLFGRA 500
           + E I PN  T+  +L  C   G ++ G +I + +        +   Y C  ++D++ + 
Sbjct: 465 QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII---KTSFQLNAYVCSVLIDMYAKL 521

Query: 501 NLLREALELVETMPFA-PNVVIWGSLMAA 528
             L  A +++  + FA  +VV W +++A 
Sbjct: 522 GKLDTAWDIL--IRFAGKDVVSWTTMIAG 548



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 138/346 (39%), Gaps = 55/346 (15%)

Query: 267 GCMDMAKGLFDKVLL----KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           G +D  + L  ++L      N  +S  ++  Y   G ++ A  +FD+M E+ +  W+ MI
Sbjct: 82  GSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMI 141

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV-LDQAQRIHLYIDKNAF 381
              A  +   +   LF  M    + P++ T   V+ AC    V  D  ++IH  I     
Sbjct: 142 KELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGL 201

Query: 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNK 441
           G    V N +ID+Y++ G ++ AR VF+ +  ++  SW +MI+  + +     A+  F  
Sbjct: 202 GKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCD 261

Query: 442 MKDESIDPNGVTFIGVLYACS-----------------------------------HAGL 466
           M    I P    F  VL AC                                    H G 
Sbjct: 262 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGS 321

Query: 467 VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP---FAPNVVIWG 523
           +     IF++M+    +      Y  +++   +     +A+EL + M      P+     
Sbjct: 322 LISAEHIFSNMSQRDAVT-----YNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLA 376

Query: 524 SLMAACRVHGEI----ELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565
           SL+ AC   G +    +L  +  K     +   +GAL+   N+YAK
Sbjct: 377 SLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALL---NLYAK 419



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 1/124 (0%)

Query: 339 NEMQVCGMKPDKVTMLSVISACAHL-GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           + ++ CG++P+  T+  ++  C    G LD+ +++H  I K  F  +  ++  ++D Y  
Sbjct: 56  DSVENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLF 115

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
            G L+ A +VF+ M  R + +W  MI   A    +      F +M +E++ PN  TF GV
Sbjct: 116 KGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGV 175

Query: 458 LYAC 461
           L AC
Sbjct: 176 LEAC 179


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/607 (37%), Positives = 357/607 (58%), Gaps = 32/607 (5%)

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           + + +  +L++   A+ L  G Q+H    +LG   +  + T LV  Y  C  + +A  +F
Sbjct: 57  NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLF 116

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           DK+   ++  W+V+I  Y  NG  +  ++L+ +M    ++PD   L  +L ACS    + 
Sbjct: 117 DKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIG 176

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G  +HE +I +    D  + + L+ MYA CGC+  A+ +FDK++ ++ V+  +M     
Sbjct: 177 EGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSM----- 231

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
                                     ++ YA+N HP E+L L  EM   G++P + T+++
Sbjct: 232 --------------------------LAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVT 265

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           VIS+ A +  L   + IH +  ++ F  + +V  A+IDMYAKCGS++ A  +FER+R + 
Sbjct: 266 VISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKR 325

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V+SW ++I  +A+HG A  AL  F +M  E+  P+ +TF+G L ACS   L+DEGR ++ 
Sbjct: 326 VVSWNAIITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYN 384

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
            M  +  I P  EHY CMVDL G    L EA +L+  M   P+  +WG+L+ +C+ HG +
Sbjct: 385 LMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNV 444

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           ELAE A ++L++L+PD  G  V+L+N+YA+  +W+ V  LR+ M ++GI K  ACS IE+
Sbjct: 445 ELAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEV 504

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
            N+VY FL+ D SH  +  IY +L  +   ++ AGYVPD  S   D+E++EK +++  HS
Sbjct: 505 KNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVFHDVEEDEKTDMVCSHS 564

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           E+LA+ +GLIS+   + + I KNLR+CEDCH  IK +SK+  REI +RD  R+HH++ G+
Sbjct: 565 ERLAIAFGLISTLPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFRHGL 624

Query: 716 CSCKDYW 722
           CSC DYW
Sbjct: 625 CSCGDYW 631



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 214/441 (48%), Gaps = 57/441 (12%)

Query: 21  SCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAP 80
           S  +L   KQ HA++ +L  ++    +L L   L +F    +  +SL  A  +F +IP  
Sbjct: 70  SAKALEPGKQLHARLCQLGIAY----NLDLATKLVNF---YSVCNSLRNAHHLFDKIPKG 122

Query: 81  PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVH 140
              + N  IRA +W+   + A+ ++ +ML  GL  D F+ P +LKA +    + EG  +H
Sbjct: 123 NLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIH 182

Query: 141 GLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
               + G+  D FV   LV MY  CG ++DAR +FDK+  RD V W+ M+  Y QNG  D
Sbjct: 183 ERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPD 242

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
           E L+L  EM    V P E  L  ++S+ +    L +G  +H F   +    +  +++ LI
Sbjct: 243 ESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALI 302

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
            MYA CG + +A  LF+++  K +V   A+++GY+  G   +A  +F++M+++       
Sbjct: 303 DMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKE------- 355

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
                                     +PD +T +  ++AC+   +LD+ + ++     N 
Sbjct: 356 -------------------------AQPDHITFVGALAACSRGRLLDEGRALY-----NL 385

Query: 381 FGGDLRVNNAI------IDMYAKCGSLESAREVFERMRRRNVIS----WTSMINAFAIHG 430
              D R+N  +      +D+   CG L+   E ++ +R+ +V+     W +++N+   HG
Sbjct: 386 MVRDCRINPTVEHYTCMVDLLGHCGQLD---EAYDLIRQMDVMPDSGVWGALLNSCKTHG 442

Query: 431 DARNALIFFNKMKDESIDPNG 451
           +   A +   K+ +   D +G
Sbjct: 443 NVELAEVALEKLIELEPDDSG 463


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/679 (36%), Positives = 378/679 (55%), Gaps = 42/679 (6%)

Query: 54  LTSFSLPTTTPSSLYY-------ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFL 106
           L S S+ +T  +++Y+       A  +F ++P+      N  +   + +  P  A++  +
Sbjct: 47  LASESIASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVV 106

Query: 107 KMLNE--GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA 164
           +M  E  G   D  +   +L A A A  L    +VH    + G      V T ++  Y  
Sbjct: 107 RMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCK 166

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
           CG +  AR +FD M  R+ V W+ MIDGY  NG   E + LF  M    V+  +  +   
Sbjct: 167 CGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAA 226

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L AC   G L     VHE ++   V L +                             N+
Sbjct: 227 LQACGELGYLDEVRRVHELLV--RVGLSS-----------------------------NV 255

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDL-ICWSAMISGYAENNHPQEALKLFNEMQV 343
            V+ A+++ Y++  + + A  +F+++  K   I W+AMI G+ +N  P++A +LF  MQ+
Sbjct: 256 SVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQL 315

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
             ++PD  T++SVI A A +    QA+ IH Y  ++    D+ V  A+IDMY+KCG +  
Sbjct: 316 ENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSI 375

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
           AR +F+  R R+VI+W +MI+ +  HG  + A+  F +MK     PN  TF+ VL ACSH
Sbjct: 376 ARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSH 435

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
           AGLVDEG++ FASM  +Y + P  EHYG MVDL GRA  L EA   ++ MP  P + ++G
Sbjct: 436 AGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYG 495

Query: 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
           +++ AC++H  +ELAE +A+ + +L P+     VLL+NIYA    W+DV  +R +M+++G
Sbjct: 496 AMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKG 555

Query: 584 ILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLE 643
           + K    S I++ NEV+ F +   +H+    IY +L ++I E+K  GYVPD  S + D+E
Sbjct: 556 LQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPDTDS-IHDVE 614

Query: 644 DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIR 703
           D+ K +++  HSEKLA+ YGLI +   + I+I KNLRVC DCHN  KL+S +  REI++R
Sbjct: 615 DDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLLTGREIIMR 674

Query: 704 DRTRFHHYKDGVCSCKDYW 722
           D  RFHH+KDG CSC DYW
Sbjct: 675 DIQRFHHFKDGKCSCGDYW 693



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 17  TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
            A+ +C  L ++ +       L     S N  +   L+T+++           A  +F++
Sbjct: 225 AALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRAD----LAAQVFNE 280

Query: 77  IPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
           +    +R+S N  I   + +  P+ A ++F +M  E +  D F+   ++ A+A     L+
Sbjct: 281 LGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQ 340

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
              +HG   +     D +V T L+ MY  CG++  AR +FD    R ++ W+ MI GY  
Sbjct: 341 ARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGS 400

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
           +G     + LFEEMK +   P+E     +L+ACS AG +  G+
Sbjct: 401 HGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQ 443


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/719 (33%), Positives = 387/719 (53%), Gaps = 43/719 (5%)

Query: 9   KPLTLPTSTAISSCSS---LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +P     S  +++C+    L   +Q H  +++   + + ++      L+  +S       
Sbjct: 202 RPNEFGFSCVVNACTGSRDLEAGRQVHGAVVR---TGYEKDVFTANALVDMYS----KLG 254

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
            +  A ++F ++PA      N FI           AL++ L+M + GL  + F+   +LK
Sbjct: 255 DIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLK 314

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A A A     G Q+HG   K     D FV  GLV MY   G + DAR +FD M  RD++ 
Sbjct: 315 ACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLIL 374

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD--EMVLSKILSACSRAGNLSYGEAVHEF 243
           W+ +I G   +G   EVL+LF  M+   ++ D     L+ +L + + +  + +   VH  
Sbjct: 375 WNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHAL 434

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
                +  D+H+ + LI  Y  CG                               Q++ A
Sbjct: 435 AEKIGLLSDSHVINGLIDSYWKCG-------------------------------QLDYA 463

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
             +F +    D+I  + M++  ++ +H ++A+KLF +M   G++PD   + S+++AC  L
Sbjct: 464 IKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSL 523

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
              +Q +++H ++ K  F  D+   NA++  YAKCGS+E A   F  +  R ++SW++MI
Sbjct: 524 SAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMI 583

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
              A HG  + AL  F++M DE + PN +T   VL AC+HAGLVD+ ++ F SM   + I
Sbjct: 584 GGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGI 643

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
               EHY CM+D+ GRA  L +A+ELV  MPF  N  +WG+L+ A RVH + EL   AA+
Sbjct: 644 DRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAE 703

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
           +L  L+P+  G  VLL+N YA    W ++ ++RK MK+  + KE A S +E+ ++V+ F+
Sbjct: 704 KLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFI 763

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYG 663
             D+SH  T  IY KL E+   +  AGYVP++   L D++  EK  ++  HSE+LA+ + 
Sbjct: 764 VGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFA 823

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LIS+   + IR+ KNLR+C DCH   K +SK+ +REI+IRD  RFHH+ +G CSC DYW
Sbjct: 824 LISTPSGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 131/445 (29%), Positives = 210/445 (47%), Gaps = 47/445 (10%)

Query: 40  HSHHSQNSLLLKL---LLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSH 96
           HSH  ++ LL      LLT +S     PS+   A ++F +IP P     +  + A S + 
Sbjct: 27  HSHLLKSGLLAGFSNHLLTLYS-RCRLPSA---ARAVFDEIPDPCHVSWSSLVTAYSNNG 82

Query: 97  RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQT 156
            P+ AL  F  M   G+  + F+ P +LK    A  +  G QVH L        D FV  
Sbjct: 83  MPRDALLAFRAMRGRGVPCNEFALPVVLKC---APDVRFGAQVHALAVATRLVHDVFVAN 139

Query: 157 GLVGMYGACGKILDARLMFDKM----SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS 212
            LV +YG  G + +AR MFD+       R+ V W+ MI  Y +N    + + +F EM  S
Sbjct: 140 ALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWS 199

Query: 213 NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
              P+E   S +++AC+ + +L  G  VH  ++      D    + L+ MY+  G ++MA
Sbjct: 200 GERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMA 259

Query: 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
             +F+K                               M   D++ W+A ISG   + H  
Sbjct: 260 ATVFEK-------------------------------MPAADVVSWNAFISGCVTHGHDH 288

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
            AL+L  +M+  G+ P+  T+ SV+ ACA  G  +  ++IH ++ K     D  V   ++
Sbjct: 289 RALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLV 348

Query: 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES--IDPN 450
           DMYAK G L+ AR+VF+ M RR++I W ++I+  +  G     L  F++M+ E   +D N
Sbjct: 349 DMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVN 408

Query: 451 GVTFIGVLYACSHAGLVDEGREIFA 475
             T   VL + + +  +   R++ A
Sbjct: 409 RTTLASVLKSTASSEAICHTRQVHA 433



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 190/400 (47%), Gaps = 44/400 (11%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+ +Y  C     AR +FD++     V WS ++  Y  NG+  + L  F  M+   V  +
Sbjct: 43  LLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCN 102

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           E  L  +L     A ++ +G  VH   +                                
Sbjct: 103 EFALPVVLKC---APDVRFGAQVHALAVATR----------------------------- 130

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV----EKDLICWSAMISGYAENNHPQE 333
             L+ ++ V+ A+V+ Y   G V++AR +FD+ V    E++ + W+ MIS Y +N+   +
Sbjct: 131 --LVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGD 188

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
           A+ +F EM   G +P++     V++AC     L+  +++H  + +  +  D+   NA++D
Sbjct: 189 AIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVD 248

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
           MY+K G +E A  VFE+M   +V+SW + I+    HG    AL    +MK   + PN  T
Sbjct: 249 MYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFT 308

Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
              VL AC+ AG  + GR+I   M        ++   G +VD++ +   L +A ++ + M
Sbjct: 309 LSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVG-LVDMYAKHGFLDDARKVFDFM 367

Query: 514 PFAPNVVIWGSLMAACR---VHGEI-ELAEFAAKQLLQLD 549
           P   ++++W +L++ C     HGE+  L     K+ L LD
Sbjct: 368 P-RRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLD 406


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/590 (38%), Positives = 368/590 (62%), Gaps = 7/590 (1%)

Query: 14  PTSTAISSCS-SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALS 72
           P S  +S  S S    K+ HA +++   +    +  L+  ++ S+SL +T   +L+ A  
Sbjct: 18  PKSGRVSKNSISTDTSKELHAHLIR---TQLHTDPFLMSDVIRSYSLSST---NLHKAHL 71

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F+QI  P   V N  IR +S S  P  A+ ++ +M ++G+T +  +   + KA AR   
Sbjct: 72  VFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSD 131

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           ++ G ++H    KLGF S  FV   L+ MY  CG++  A+ MFD M  RD+V W+ +I G
Sbjct: 132 IVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICG 191

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y Q   + EVL LF+ M  +N++ D + + KI+ ACS  G+  + +++ ++I +NN+ +D
Sbjct: 192 YSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEID 251

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
            +L +TLI MY      ++A+G+FD++  +N+V   A+V G+++ G +  AR +FD M +
Sbjct: 252 VYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPK 311

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           +D+I W++MI+GY++ +   +A+KLF EM    +KPDKVT+ SV+SACAHLG LD    +
Sbjct: 312 RDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAV 371

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H YI ++    D+ V N++IDMY KCG +E A EVF RM+ ++ +SWTS+I+  A++G A
Sbjct: 372 HHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFA 431

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
            +AL  F++M  E + P   TF+G+L AC+HAGLV++G E F SM + + + P  +HYGC
Sbjct: 432 NSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGC 491

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           +VDL  R+  + +A E ++ MP  P+VV+W  L++AC++HG + LAE A K+LL+LDP  
Sbjct: 492 VVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCD 551

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
            G  VLLSN YA   RW D  ++R+ M++  + K    S IE++  V  +
Sbjct: 552 SGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDGMVSNY 601


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/542 (40%), Positives = 341/542 (62%), Gaps = 1/542 (0%)

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           ++  W+ +I    ++G   E L  F  M+  +++P+       + +CS   +L  G   H
Sbjct: 40  NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 99

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
           +  +      D  + S L+ MY+ CG +  A+ LFD++  +N+V  T+M++GY +     
Sbjct: 100 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 159

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG-MKPDKVTMLSVISAC 360
            A  +FD M E+D+I W+++I+ YA+N    E++++F+ M   G +  + VT+ +V+ AC
Sbjct: 160 RALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLAC 219

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           AH G     + IH  + K     ++ V  +IIDMY KCG +E AR+ F+RMR +NV SW+
Sbjct: 220 AHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWS 279

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +M+  + +HG A+ AL  F +M    + PN +TF+ VL ACSHAGL++EG   F +M++E
Sbjct: 280 AMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHE 339

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
           +++ P  EHYGCMVDL GRA  L+EA +L++ M   P+ V+WG+L+ ACR+H  ++L E 
Sbjct: 340 FDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEI 399

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
           +A++L +LDP + G  VLLSNIYA   RW+DV  +R  MK  G++K    S +++   V+
Sbjct: 400 SARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVH 459

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
            FL  DR H Q ++IYE L ++  +L+  GYVPD+ S L D+  EEK  V+  HSEKLA+
Sbjct: 460 VFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAV 519

Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
            +G++++   + I I+KNLRVC DCH  IK +SK+  REIV+RD  RFHH++DG+CSC D
Sbjct: 520 AFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGD 579

Query: 721 YW 722
           YW
Sbjct: 580 YW 581



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 126/432 (29%), Positives = 220/432 (50%), Gaps = 29/432 (6%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I  ++ S     AL+ F  M    L  +R +FP  +K+ +    L  G Q H     
Sbjct: 45  NSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALI 104

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
            GF  D FV + LV MY  CG++ DAR +FD++S+R+IV W+ MI GY QN      L +
Sbjct: 105 FGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRV 164

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAG-NLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           F+ M     E D +  + I++  ++ G +    E  H  + D  +  +A   S ++   A
Sbjct: 165 FDGM----AERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACA 220

Query: 265 NCGCMDMAKGLFDKV----LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
           + G   + K + D+V    L  N+ V T+++  Y + G+VE AR  FD+M EK++  WSA
Sbjct: 221 HSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSA 280

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           M++GY  + H +EAL++F EM + G+KP+ +T +SV++AC+H G+L++    H +    A
Sbjct: 281 MVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGW--HWF---KA 335

Query: 381 FGGDLRVNNAI------IDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDAR 433
              +  V   +      +D+  + G L+ A ++ + M+ R + + W +++ A  +H +  
Sbjct: 336 MSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVD 395

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYAC-SHAGLVDEGREIFASMTNEYNI-PPKYEHYG 491
              I   K+ +  +DP    +  +L    + AG  ++   +   M N   + PP +    
Sbjct: 396 LGEISARKLFE--LDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFS--- 450

Query: 492 CMVDLFGRANLL 503
            +VD+ GR ++ 
Sbjct: 451 -LVDIKGRVHVF 461



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 2/116 (1%)

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
           + NV SW S+I   A  GD+  AL  F+ M+  S+ PN  TF   + +CS    +  GR+
Sbjct: 38  KTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQ 97

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
                   +   P       +VD++ +   LR+A  L + +    N+V W S++  
Sbjct: 98  AHQQALI-FGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR-NIVSWTSMITG 151


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/601 (37%), Positives = 348/601 (57%), Gaps = 32/601 (5%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           IL++   +  L  G Q+HG     G G D  + T LV +Y ACG++  AR +FD M  R+
Sbjct: 68  ILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRN 127

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +  W+V+I  Y + G  +  + L+  M    VEPD      +L AC+   +L  G  VH+
Sbjct: 128 VFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQ 187

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
            +       D  + + ++ MYA CGC                               V+D
Sbjct: 188 RVSGTRWGQDVFVCAGVVDMYAKCGC-------------------------------VDD 216

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           AR +FD +  +D + W++MI+ Y +N  P EAL L  +M   G+ P   T++S +SA A 
Sbjct: 217 ARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAAD 276

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
              L + + +H +  +  FG   ++  +++DMYAK G ++ AR +FE++ +R ++SW +M
Sbjct: 277 AAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAM 336

Query: 423 INAFAIHGDARNALIFFNKMK-DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           I  + +HG A  AL  FNKMK D  + P+ +TF+GVL AC+H G+V+E +E F  M N Y
Sbjct: 337 ICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAY 396

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
           +I P  +HY C++D+ G      EA +L++ M   P+  IWG+L+  C++H  +EL E A
Sbjct: 397 SIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELA 456

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
            ++L++L+P+  G  V LSNIYA+  +W+    +RK M  RG+ K  ACS IE+  + + 
Sbjct: 457 LQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHG 516

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           FL  D SH ++D+IY +L  +   +  AGYVPDI     +++D+EKR ++  HSE+LA+ 
Sbjct: 517 FLVGDASHPRSDEIYGELERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHSERLAIA 576

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           +GLIS+   + + + KNLRVCEDCH  IKL+S++  REI+IRD  R+HH+ +G CSCKDY
Sbjct: 577 FGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDY 636

Query: 722 W 722
           W
Sbjct: 637 W 637



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 133/494 (26%), Positives = 217/494 (43%), Gaps = 58/494 (11%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMKQTHAQILK---LSHSHHSQNSLLLKLLLTSFSLPT 61
           + P  P T P        +S  H    H  IL+    S S  +   L  +LL++     T
Sbjct: 44  ASPPPPSTNP------RLASSPHAYHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDT 97

Query: 62  TTPSSLY----------YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE 111
              + L           +A  +F  +P     + N  IRA +     + A++++  M+  
Sbjct: 98  VLSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEH 157

Query: 112 GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA 171
           G+  D F++P +LKA A    L  G +VH   +   +G D FV  G+V MY  CG + DA
Sbjct: 158 GVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDA 217

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
           R +FD ++ RD V W+ MI  Y QNG   E L L  +M  + + P    L   +SA + A
Sbjct: 218 RAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADA 277

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
             L  G  +H F       L   L+++L+ MYA  G + +A+ LF++++ + LV   AM+
Sbjct: 278 AALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMI 337

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPDK 350
            GY   G                               H  EAL LFN+M+    + PD 
Sbjct: 338 CGYGMHG-------------------------------HADEALALFNKMKGDAQVTPDN 366

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVF 408
           +T + V+SAC H G++++A+    Y+  NA+     V +   +ID+    G  E A ++ 
Sbjct: 367 ITFVGVLSACNHGGMVEEAKEF-FYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLI 425

Query: 409 ERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGL 466
           + M    +   W +++N   IH +     +   K+ + E  D      +  +YA   +G 
Sbjct: 426 KGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYA--QSGK 483

Query: 467 VDEGREIFASMTNE 480
            ++   +   MTN 
Sbjct: 484 WEKAARVRKLMTNR 497



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 90/174 (51%), Gaps = 2/174 (1%)

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           S++ +C   G L   +++H  +  +  G D  ++  ++D+YA CG +  AR +F+ M +R
Sbjct: 67  SILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKR 126

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           NV  W  +I A+A  G    A+  +  M +  ++P+  T+  VL AC+    ++ GRE+ 
Sbjct: 127 NVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVH 186

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
             ++        +   G +VD++ +   + +A  + + +    + V+W S++AA
Sbjct: 187 QRVSGTRWGQDVFVCAG-VVDMYAKCGCVDDARAVFDGIAVR-DAVVWNSMIAA 238


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/573 (41%), Positives = 343/573 (59%), Gaps = 40/573 (6%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D   +T ++G Y   G++++AR++FD+M  R++V W+ MI GY QN   D    LFE M 
Sbjct: 252 DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVM- 310

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
                P++                            N V+  A L+      Y NCG +D
Sbjct: 311 -----PEK----------------------------NEVSWTAMLKG-----YTNCGRLD 332

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            A  LF+ + +K++V   AM+  + + G+V  AR +FDQM EKD   WSAMI  Y     
Sbjct: 333 EASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGL 392

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
             +AL+LF  MQ  G++P+  +++SV+S CA L  LD  + IH  + ++ F  D+ V + 
Sbjct: 393 ELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASV 452

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           ++ MY KCG+L  A++VF+R   ++V+ W S+I  +A HG    AL  F+ M    I P+
Sbjct: 453 LLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPD 512

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
            VTF+GVL ACS+ G V +G EIF SM  +Y +  K EHY CMVDL GRA  L EA++L+
Sbjct: 513 DVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLI 572

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
           E MP   + +IWG+L+ ACR H +++LAE AAK+LL L+P + G  +LLSNIYA   RW 
Sbjct: 573 EKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWD 632

Query: 571 DVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS-HKQTDQIYEKLNEVISELKPA 629
           DV ELR++M++R + K   CS I +  +V++F   D S H +  +I   L  +   L+ A
Sbjct: 633 DVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREA 692

Query: 630 GYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFI 689
           GY PD    L D+++EEK + + +HSEKLA+ YGL+       IR++KNLRVC DCH  I
Sbjct: 693 GYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAI 752

Query: 690 KLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KL++KV  REI++RD  RFHH+KDG CSC+DYW
Sbjct: 753 KLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 199/408 (48%), Gaps = 45/408 (11%)

Query: 155 QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV 214
           +  L+  Y   G+I  AR++FD+M  ++I+ W+ ++ GYFQN    E  N+F++M   N 
Sbjct: 101 RNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNT 160

Query: 215 -------------------------EPDEMVLS--KILSACSRAGNLSYGEAVHEFIIDN 247
                                     P+  V+S   ++    + G +S  E +   + + 
Sbjct: 161 ISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEK 220

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
           NV     +   L+      G +D A  LFD +  K++V  T M+ GY + G++ +AR++F
Sbjct: 221 NVVSWTVMLGGLLQE----GRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLF 276

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
           D+M  ++++ W+ MI+GY +N     A KLF  M     + ++V+  +++    + G LD
Sbjct: 277 DEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP----EKNEVSWTAMLKGYTNCGRLD 332

Query: 368 QAQRIHLYIDKNAFG-GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           +A  +      NA     +   NA+I  + + G +  AR+VF++MR ++  +W++MI  +
Sbjct: 333 EASELF-----NAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVY 387

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT-NEYNIPP 485
              G   +AL  F  M+ E I PN  + I VL  C+    +D GREI A +  +++++  
Sbjct: 388 ERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDV 447

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
                  ++ ++ +   L +A ++ +      +VV+W S++     HG
Sbjct: 448 YVA--SVLLSMYIKCGNLAKAKQVFDRFA-VKDVVMWNSIITGYAQHG 492



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 117/259 (45%), Gaps = 37/259 (14%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F Q+        +  I+          AL++F  M  EG+   R +FP ++  ++ 
Sbjct: 365 ARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGI---RPNFPSLISVLSV 421

Query: 130 AEGLLE---GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
             GL     G ++H    +  F  D +V + L+ MY  CG +  A+ +FD+ + +D+V W
Sbjct: 422 CAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMW 481

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +I GY Q+GL  E L +F +M  S + PD++    +LSACS  GN+  G       I 
Sbjct: 482 NSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKG-----LEIF 536

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
           N++     ++   I  YA                         MV    RAG++ +A  +
Sbjct: 537 NSMETKYQVEQK-IEHYA------------------------CMVDLLGRAGKLNEAMDL 571

Query: 307 FDQM-VEKDLICWSAMISG 324
            ++M +E D I W A++  
Sbjct: 572 IEKMPMEADAIIWGALLGA 590


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 256/709 (36%), Positives = 391/709 (55%), Gaps = 57/709 (8%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           AL +F ++    + + N  IR  + +   + A+  + +M  EG+  D F+FP ++KA   
Sbjct: 77  ALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGE 136

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L+ G +VHG   K+GF  D +V   L+ MY   G I  A  +FD+M  RD+V W+ M
Sbjct: 137 LLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSM 196

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           + GY  +G     L  F+EM     + D   +   L ACS    L  G  +H  +I + +
Sbjct: 197 VSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSEL 256

Query: 250 ALDAHLQS------------------------------------------------TLIT 261
            LD  +Q+                                                T+I 
Sbjct: 257 ELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVIPDVITMIN 316

Query: 262 MYANC---GCMDMAKGL----FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           +  +C   G +   K +      K+ L  LV+ TA+V  Y + G+++ A  +F+QM EK+
Sbjct: 317 LLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKN 376

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           ++ W+ M++ Y +N   +EALK+F  +    +KPD +T+ SV+ A A L    + ++IH 
Sbjct: 377 MVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHS 436

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           YI K   G +  ++NAI+ MYAKCG L++ARE F+ M  ++V+SW +MI A+AIHG  R 
Sbjct: 437 YIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRT 496

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           ++ FF++M+ +   PNG TF+ +L ACS +GL+DEG   F SM  EY I P  EHYGCM+
Sbjct: 497 SIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCML 556

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DL GR   L EA   +E MP  P   IWGSL+AA R H ++ LAE AA+ +L L  D+ G
Sbjct: 557 DLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDNTG 616

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
             VLLSN+YA+  RW+DV  ++  MKE+G++K   CS +++N     F+  DRSH  T+ 
Sbjct: 617 CYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHAHTNL 676

Query: 615 IYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR-EVILWHSEKLALCYGLISSKKDSCI 673
           IY+ L+ ++ ++    Y+  + +    L+  +KR     +HS KLA+C+GLIS+   + +
Sbjct: 677 IYDVLDILLKKIGEDIYLHSL-TKFRPLDVAKKRGNSPEYHSVKLAICFGLISTAIGNPV 735

Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + KN R+C+DCH   K +S+V  REIV+ D   FHH++DG CSC+DYW
Sbjct: 736 IVRKNTRICDDCHRAAKKISQVTKREIVVGDAKVFHHFRDGCCSCRDYW 784



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 8/244 (3%)

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           T  + G+  +G + +A  +F++M   D   W+ +I GY  N   QEA+  +  M+  G++
Sbjct: 62  TRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIR 121

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
            D  T   VI AC  L  L   Q++H  + K  F  D+ V N +IDMY K G +E A +V
Sbjct: 122 SDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKV 181

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F+ M  R+++SW SM++ + I GD  ++L+ F +M       +    I  L ACS    +
Sbjct: 182 FDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCL 241

Query: 468 DEGREIFASMTN---EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGS 524
             G EI   +     E +I  +      ++D++G+   +  A E V    ++ N+V W +
Sbjct: 242 RSGMEIHCQVIRSELELDIMVQTS----LIDMYGKCGKVDYA-ERVFNRIYSKNIVAWNA 296

Query: 525 LMAA 528
           ++  
Sbjct: 297 MIGG 300



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 84/171 (49%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L  A  +F+Q+        N  + A   + + K ALK+F  +LNE L  D  +   +L A
Sbjct: 362 LKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPA 421

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
           +A      EG Q+H    KLG GS+ F+   +V MY  CG +  AR  FD M  +D+V W
Sbjct: 422 VAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSW 481

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           + MI  Y  +G     +  F EM+    +P+      +L+ACS +G +  G
Sbjct: 482 NTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEG 532


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 260/774 (33%), Positives = 412/774 (53%), Gaps = 63/774 (8%)

Query: 8   TKPLT----LPTSTAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           TKP +    LP S+ I  C   +S    K  H Q++  S+ ++    L+ K+L+      
Sbjct: 63  TKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMI--SNGYNPDAYLMTKILM--LYAR 118

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
           +     L YA  +F ++P       N  I A +       A  +F +ML  G+  D F+F
Sbjct: 119 SGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTF 178

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
              L+          G QVH      GF  D FV   L+ MY  C        +FD+M  
Sbjct: 179 ASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGE 238

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS--NVEPDEMVLSKILSACSRAGNLSYGE 238
           R+ V W+ +I    Q G F++ L LF  M+ S   ++PD+   + +L+ C+   N + G 
Sbjct: 239 RNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGR 298

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
            +H  +I  N+  +  +++ L+ MY+ CG ++ AK +F+++  +N     +M+ GY + G
Sbjct: 299 QIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNG 358

Query: 299 QVEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
           + ++A  +F QM    ++ D    S+M+S     +  Q+  +L N +    M+ + +  +
Sbjct: 359 ETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV 418

Query: 355 SVISACAHLGVLDQAQRIH-----------LY-----------IDKNAFGGDLR------ 386
            ++   A  G +D A +++           L+           + K +F   L       
Sbjct: 419 VLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDI 478

Query: 387 ---------------VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
                          +  A++DMY+KCG++  AR VF+ M  +N++SW +MI+ ++ HG 
Sbjct: 479 EYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGC 538

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
           ++ ALI + +M  + + PN VTF+ +L ACSH GLV+EG  IF SM  +YNI  K EHY 
Sbjct: 539 SKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYT 598

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           CMVDL GRA  L +A E VE MP  P V  WG+L+ ACRVH ++++   AA++L +LDP 
Sbjct: 599 CMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQ 658

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
           + G  V++SNIYA   RW++V ++R+ MK +G+ K+   S IE+N+E+  F    ++H +
Sbjct: 659 NPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPK 718

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLED---EEKREVILWHSEKLALCYGLISSK 668
           T++IY  L  +  + K  GY+PD    L +++D   EE+ E +L HSE+LAL  GLIS  
Sbjct: 719 TEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLP 778

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           K S IR+ KNLR+C DCH   K +SK+  R I+ RD  RFHH+++G CSC DYW
Sbjct: 779 KKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/573 (41%), Positives = 343/573 (59%), Gaps = 40/573 (6%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D   +T ++G Y   G++++AR++FD+M  R++V W+ MI GY QN   D    LFE M 
Sbjct: 252 DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVM- 310

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
                P++                            N V+  A L+      Y NCG +D
Sbjct: 311 -----PEK----------------------------NEVSWTAMLKG-----YTNCGRLD 332

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            A  LF+ + +K++V   AM+  + + G+V  AR +FDQM EKD   WSAMI  Y     
Sbjct: 333 EASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGL 392

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
             +AL+LF  MQ  G++P+  +++SV+S CA L  LD  + IH  + ++ F  D+ V + 
Sbjct: 393 ELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASV 452

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           ++ MY KCG+L  A++VF+R   ++V+ W S+I  +A HG    AL  F+ M    I P+
Sbjct: 453 LLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPD 512

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
            VTF+GVL ACS+ G V +G EIF SM  +Y +  K EHY CMVDL GRA  L EA++L+
Sbjct: 513 DVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLI 572

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
           E MP   + +IWG+L+ ACR H +++LAE AAK+LL L+P + G  +LLSNIYA   RW 
Sbjct: 573 EKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWD 632

Query: 571 DVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS-HKQTDQIYEKLNEVISELKPA 629
           DV ELR++M++R + K   CS I +  +V++F   D S H +  +I   L  +   L+ A
Sbjct: 633 DVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREA 692

Query: 630 GYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFI 689
           GY PD    L D+++EEK + + +HSEKLA+ YGL+       IR++KNLRVC DCH  I
Sbjct: 693 GYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAI 752

Query: 690 KLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KL++KV  REI++RD  RFHH+KDG CSC+DYW
Sbjct: 753 KLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 199/408 (48%), Gaps = 45/408 (11%)

Query: 155 QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV 214
           +  L+  Y   G+I  AR++FD+M  ++I+ W+ ++ GYFQN    E  N+F++M   N 
Sbjct: 101 RNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNT 160

Query: 215 -------------------------EPDEMVLS--KILSACSRAGNLSYGEAVHEFIIDN 247
                                     P+  V+S   ++    + G +S  E +   + + 
Sbjct: 161 ISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEK 220

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
           NV     +   L+      G +D A  LFD +  K++V  T M+ GY + G++ +AR++F
Sbjct: 221 NVVSWTVMLGGLLQE----GRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLF 276

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
           D+M  ++++ W+ MI+GY +N     A KLF  M     + ++V+  +++    + G LD
Sbjct: 277 DEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP----EKNEVSWTAMLKGYTNCGRLD 332

Query: 368 QAQRIHLYIDKNAFG-GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           +A  +      NA     +   NA+I  + + G +  AR+VF++MR ++  +W++MI  +
Sbjct: 333 EASELF-----NAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVY 387

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT-NEYNIPP 485
              G   +AL  F  M+ E I PN  + I VL  C+    +D GREI A +  +++++  
Sbjct: 388 ERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDV 447

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
                  ++ ++ +   L +A ++ +      +VV+W S++     HG
Sbjct: 448 YVA--SVLLSMYIKCGNLAKAKQVFDRFA-VKDVVMWNSIITGYAQHG 492



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 117/259 (45%), Gaps = 37/259 (14%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F Q+        +  I+          AL++F  M  EG+   R +FP ++  ++ 
Sbjct: 365 ARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGI---RPNFPSLISVLSV 421

Query: 130 AEGLLE---GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
             GL     G ++H    +  F  D +V + L+ MY  CG +  A+ +FD+ + +D+V W
Sbjct: 422 CAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMW 481

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +I GY Q+GL  E L +F +M  S + PD++    +LSACS  GN+  G       I 
Sbjct: 482 NSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKG-----LEIF 536

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
           N++     ++   I  YA                         MV    RAG++ +A  +
Sbjct: 537 NSMETKYQVEQK-IEHYA------------------------CMVDLLGRAGKLNEAMDL 571

Query: 307 FDQM-VEKDLICWSAMISG 324
            ++M +E D I W A++  
Sbjct: 572 IEKMPMEADAIIWGALLGA 590


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/701 (36%), Positives = 392/701 (55%), Gaps = 42/701 (5%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83
           SLT +K  H  ILK      S  S     L+  +       S +  A  +F ++P     
Sbjct: 16  SLTTLKSLHTHILKSG----SLFSFFGHKLIDGY----IKCSVITEARKLFDEMPNRHIV 67

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
             N  I +     + K A++++  ML EG+  D ++F  I KA +      EG + HGL 
Sbjct: 68  TWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLA 127

Query: 144 TKLGFG-SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202
             LGF  SD FV TG+V MY   GK+ DAR +FD++  +D+V ++ +I GY Q GL  E 
Sbjct: 128 VVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEA 187

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           L +FE+M  S ++P+E  L+ +L +C   G+L  G+ +H  ++ + +      Q++L+TM
Sbjct: 188 LEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTM 247

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           Y                               S+   VED+  +F+ +     + W++ I
Sbjct: 248 Y-------------------------------SKCNMVEDSIKVFNSLAYASHVTWTSFI 276

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
            G  +N   + AL +F EM  C + P+  T  S++ AC+ L +L+  ++IH    K    
Sbjct: 277 VGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVD 336

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
           G+  V+ A+I +Y KCG++E AR VFE +   +V+S  +MI A+A +G    AL  F +M
Sbjct: 337 GNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERM 396

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
           K     PN VTFI +L AC++AGLV+EG +IF+ + N ++I    +HY CM+DL GRA  
Sbjct: 397 KKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKR 456

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
             EA  L+E     P+V+ W +L+ AC++HGE+E+AE   K++L   P   G  +LL+NI
Sbjct: 457 FEEAAMLIEEGK-NPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNI 515

Query: 563 YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
           YA   +W +V E++ + ++  + K  A S ++++ EV+ F+  D SH +  +I E L+E+
Sbjct: 516 YASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHEL 575

Query: 623 ISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS-KKDSCIRIVKNLRV 681
           I ++   GY PD    L DLE+E+K   + +HSEKLA+ + L  +  K++ IRI KNLRV
Sbjct: 576 IEKVITLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRV 635

Query: 682 CEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           C DCH++IK VS +  R+I+ RD  RFHH+K G+CSCKDYW
Sbjct: 636 CGDCHSWIKFVSLLTGRDIIARDAKRFHHFKGGICSCKDYW 676


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/724 (32%), Positives = 388/724 (53%), Gaps = 43/724 (5%)

Query: 2   STLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILK--LSHSHHSQNSLLLKLLLTSFSL 59
           S  +Q   PL  P ++ +     L  ++Q HAQI+   L+H+    NSL+   +      
Sbjct: 14  SNPTQRLSPLAQPHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGL-- 71

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
                  L  A  IF   P          I  ++ +     A+ VF +M+      +  +
Sbjct: 72  -------LADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVT 124

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
              +L A A    +     VH    + GF  + FV+T LV MY   G +  AR +F+ MS
Sbjct: 125 ISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMS 184

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            R++V W+ ++ GY  +G  +E ++LF  M+   +  D   +  ++ A    G L  G  
Sbjct: 185 ERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTG 244

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H FII      D H+++ L+ +Y +  C+D                             
Sbjct: 245 IHGFIIRTGYENDKHIKTALMDIYVSHNCVD----------------------------- 275

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVIS 358
             DA  +F +M  KD+  W+ M++G++   H   A+K FN+M  +  +K D + ++ ++S
Sbjct: 276 --DAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILS 333

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           +C+H G L Q +R+H    K  F  ++ V +A+IDMYA CG+LE A+  F  M  ++V+ 
Sbjct: 334 SCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVC 393

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           W +MI    ++G   +A+  F +MK   +DP+  TF+ VLYACSHAG+V EG +IF  M 
Sbjct: 394 WNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMV 453

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
              ++ P  +HY C++D+ GRA  L  A   +  MPF P+  ++ +L+ ACR+HG I+L 
Sbjct: 454 KTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLG 513

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
              ++++ +++P+  G  VLLSN+YA    W+ V   R S++ + + K+   S IE+N E
Sbjct: 514 HEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQE 573

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           +Y F+  ++ H Q  +I   L  +I ++K AGYVP+ +  L D+ D+ K++++  HSEK+
Sbjct: 574 IYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKM 633

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+ +GL+ +K ++ IRI KNLR C+DCH   K VSKV+ R +VI+D  RFH ++DGVCSC
Sbjct: 634 AIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSC 693

Query: 719 KDYW 722
           +DYW
Sbjct: 694 RDYW 697


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/600 (37%), Positives = 355/600 (59%), Gaps = 31/600 (5%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           ILK  A+ + LL+G   H     +G  +D      L+ MY  CG +  AR +FD+M  R 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +V W+ MI    QNG  +E L+L  +M+       E  +S +L AC+    LS  + +H 
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           F I                       MD+           N+ V+TA++  Y++ G ++D
Sbjct: 190 FAIK--------------------AAMDL-----------NVFVATALLDVYAKCGLMKD 218

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           A  +F+ M ++ ++ WS+M +GY +N   ++AL LF +    G+K D+  M SVI ACA 
Sbjct: 219 AVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAG 278

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           L  + + ++++  + K+ F  ++ V +++IDMYAKCG +E + +VF  + +RNV+ W +M
Sbjct: 279 LAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAM 338

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I+  + H  +   +I F KM+   + PN VTF+ VL AC H GLV +G++ F  MT E++
Sbjct: 339 ISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHH 398

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           + P   HY CMVD   RA  + EA +L+  +PF  +  +WGSL+A+CR HG +ELAE AA
Sbjct: 399 LAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAA 458

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           K+L  ++P + G  +LLSN+YA + +W +V ++RK +KE  + KER  S IE+ ++V+ F
Sbjct: 459 KKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLF 518

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
           +  +R+H +  +IY KLNEV+ EL+  GY  +    L  + +  K+E++  HSEKLA   
Sbjct: 519 MVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTM 578

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           GL+    ++ IRI+KNLR+C DCH+F+KL SK + R++++RD  RFHH+K+G CSC D+W
Sbjct: 579 GLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 201/430 (46%), Gaps = 46/430 (10%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT--TTPSSLYYALSIFSQIPAPPS 82
           L   K  HAQIL +          L   LLTS  L    +   S+ +A  +F ++P+   
Sbjct: 80  LLQGKACHAQILLMG---------LKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSL 130

Query: 83  RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGL 142
              N  I +++ +     AL + L+M  EG     F+   +L A A    L E   +H  
Sbjct: 131 VSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAF 190

Query: 143 GTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202
             K     + FV T L+ +Y  CG + DA  +F+ M  R +V WS M  GY QN ++++ 
Sbjct: 191 AIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQA 250

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           L LF +   + ++ D+ ++S ++ AC+    +  G+ V+  +  +    +  + S+LI M
Sbjct: 251 LALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDM 310

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           YA CG ++ +  +F  V  +N+V+  AM+SG SR      AR +                
Sbjct: 311 YAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSR-----HARSL---------------- 349

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAF 381
                     E + LF +MQ  G+ P+ VT +SV+SAC H+G++ + Q+   L   ++  
Sbjct: 350 ----------EVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHL 399

Query: 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIHGDARNALIFFN 440
             ++   + ++D  ++ G +  A ++  ++      S W S++ +   HG+   A +   
Sbjct: 400 APNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAK 459

Query: 441 KMKDESIDPN 450
           K+ D  I+P+
Sbjct: 460 KLFD--IEPH 467



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 150/331 (45%), Gaps = 35/331 (10%)

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
           +IL  C++   L  G+A H  I+   +  D    + LI MY+ CG +D A+ +FD     
Sbjct: 69  EILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFD----- 123

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
                                     +M  + L+ W+ MI    +N    EAL L  +MQ
Sbjct: 124 --------------------------EMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQ 157

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
             G    + T+ SV+ ACA    L + Q +H +  K A   ++ V  A++D+YAKCG ++
Sbjct: 158 REGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMK 217

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            A  VFE M  R+V++W+SM   +  +     AL  F K  +  +  +      V+ AC+
Sbjct: 218 DAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACA 277

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
               + EG+++ A + ++            ++D++ +   + E+ ++   +    NVV+W
Sbjct: 278 GLAAMIEGKQVNA-LLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE-KRNVVLW 335

Query: 523 GSLMAACRVHGE-IE-LAEFAAKQLLQLDPD 551
            ++++    H   +E +  F   Q + L P+
Sbjct: 336 NAMISGLSRHARSLEVMILFEKMQQMGLSPN 366


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/601 (37%), Positives = 361/601 (60%), Gaps = 2/601 (0%)

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           LK   + +  L   ++H    K G      +   L+  YG C  + DA  +FD+M  RD 
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDH 68

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           V W+ ++  Y Q  L ++ L++F  M  ++ ++PD  V + +L AC+   +L  G+ VH 
Sbjct: 69  VSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHA 128

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
             + +    D  ++S+L+ MYA CG   +A+ +FD +L+K  V  TAM+SGY+R+G  ++
Sbjct: 129 RFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDE 188

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK-PDKVTMLSVISACA 361
           A  +F +   ++L  W+A+ISG  ++ +  +   +F EM+  G+   D + + SV+ ACA
Sbjct: 189 AMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACA 248

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
           +L VL   ++IH  +  + +   L ++NA++DMYAKC  + +AR VF RM  R+V+SWTS
Sbjct: 249 NLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTS 308

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           +I   A HG A+ AL  +++M    I PN VTF+G++YACSHAGLV +GR++F +M  +Y
Sbjct: 309 IIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDY 368

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
            I P  + + C +DL  R+  L EA +L++TMP  P+   W +L++AC+ HG  E+    
Sbjct: 369 RISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRI 428

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
           A +LL L+       VLLSN+YA   +W+ +  +RK M +  + ++   S I++  E   
Sbjct: 429 ADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQV 488

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           F   +  H   D+I+  L E+ +E++  GY+PD    L D+E++EK   + WHSE+ A+ 
Sbjct: 489 FHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERWAVA 548

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           YGL+ +   + IRIVKNLR+C DCH F+KL S +  +EI++RD TR+HH+KDG CSC D+
Sbjct: 549 YGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDF 608

Query: 722 W 722
           W
Sbjct: 609 W 609



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/496 (23%), Positives = 218/496 (43%), Gaps = 77/496 (15%)

Query: 29  KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKF 88
           K+ HAQI+K   S  +Q   L   LL ++        + Y    +F ++P          
Sbjct: 22  KKIHAQIVK---SGLNQCQPLPNTLLDAYGKCNLLQDAHY----LFDEMPQRDHVSWASI 74

Query: 89  IRAISWSHRPKHALKVFLKMLN-EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
           + A + +  P   L +F  M   + L  D F +  +LKA A    L  G QVH       
Sbjct: 75  LTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSP 134

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207
           F  D  V++ LV MY  CG    AR +FD +  +  V W+ M+ GY ++GL DE + LF 
Sbjct: 135 FVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFL 194

Query: 208 -------------------------------EMKMSNVE-PDEMVLSKILSACSRAGNLS 235
                                          EM+   V+  D +VLS ++ AC+    L 
Sbjct: 195 RTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLG 254

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G+ +H  +I +       + + L+ MYA C  +  A+ +F+++L +++V  T+++ G +
Sbjct: 255 LGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAA 314

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           + G+ ++A  ++DQMV  ++                               KP++VT + 
Sbjct: 315 QHGRAKEALDLYDQMVLAEI-------------------------------KPNEVTFVG 343

Query: 356 VISACAHLGVLDQAQRI-HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RR 413
           +I AC+H G++ + +++    I+       L++    +D+ ++ G L  A ++ + M  +
Sbjct: 344 LIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHK 403

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESI-DPNGVTFIGVLYACSHAGLVDEGRE 472
            +  +W ++++A   HG+    +   +++   ++ +P+    +  +YA   AG  ++   
Sbjct: 404 PDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYA--GAGKWEQMSR 461

Query: 473 IFASMTN-EYNIPPKY 487
           +   MT+ E    P Y
Sbjct: 462 VRKLMTDMEVKRKPGY 477


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/636 (36%), Positives = 375/636 (58%), Gaps = 12/636 (1%)

Query: 98  PKHALKVFLKMLNEGLTIDRF----SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPF 153
           PK +L + L++L + + +  F    S+ PI + + R   +  G Q H      G   + F
Sbjct: 55  PKPSLNLQLRILLQPI-LQHFPHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAF 113

Query: 154 VQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV---LNLFEEMK 210
           +   +V MY + G +  A ++FD++     + ++ +I  Y ++G        L  +  M 
Sbjct: 114 LAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMH 173

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
              +  D   L  +L +C+    +  G  VH   +   +  D ++ ++LI MY  CG + 
Sbjct: 174 FLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIG 233

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            A+ LFDK++++++    A+++GY + G++  A  +F++M  ++++ W+AMISGY +N  
Sbjct: 234 DARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGF 293

Query: 331 PQEALKLFNEMQVCG--MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
            ++AL LF+EM   G  MKP+ VT++SV+ ACA    L++ +RIH + +      +  V 
Sbjct: 294 AEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQ 353

Query: 389 NAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
            A+  MYAKC SL  AR  F+ + +  +N+I+W +MI A+A HG    A+  F  M    
Sbjct: 354 TALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAG 413

Query: 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
           + P+ VTF+G+L  CSH+GL+D G   F  M   +++ P+ EHY C+VDL GRA  L EA
Sbjct: 414 VQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEA 473

Query: 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566
            EL+  MP      +WG+L+AACR H  +E+AE AA++L  L+PD+ G  VLLSN+YA+ 
Sbjct: 474 KELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEA 533

Query: 567 KRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL 626
             W++V +LR  +K +G+ K   CS IE+N + + F+ AD+SH Q  +IY+ L  +  ++
Sbjct: 534 GMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKI 593

Query: 627 KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCH 686
           K AGY+PD    L D+ +EEK   +  HSEKLA+ +GL++++    +R+ KNLR+C DCH
Sbjct: 594 KMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCH 653

Query: 687 NFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              K +SK+Y REI++RD  RFH +KDG CSC DYW
Sbjct: 654 AATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/510 (43%), Positives = 311/510 (60%), Gaps = 34/510 (6%)

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           PD      +L AC+R   L YGE +H     N +     ++++L+ +Y  CG       L
Sbjct: 120 PDTHTYPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACG-------L 172

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV--EKDLICWSAMISGYAENNHPQE 333
           F                        E A  +FD++   E++L+ W+++++G+A N  P E
Sbjct: 173 F------------------------ESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNE 208

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
            L +F EM      PD  T++SV++ACA +GVL   +R+H+++ K    G+    NA+ID
Sbjct: 209 VLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALID 268

Query: 394 MYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
           +YAKCG ++ AR++F  M   R V+SWTS+I   A++G   +AL  F+ M+ E + P  +
Sbjct: 269 LYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEI 328

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
           T +GVLYACSH GLVD+G   F  M  EY I P+ EH GCMVDL GRA  + EA   + T
Sbjct: 329 TMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITT 388

Query: 513 MPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572
           MP  PN V+W +L+ AC +H ++E+ E A  +L++LDP H G  VLLSN+YA   RW DV
Sbjct: 389 MPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRWADV 448

Query: 573 GELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYV 632
             LRK+M   G+ K    S +E+ N VYEF+  DRSH +TDQIYE L ++   L+  GY+
Sbjct: 449 HVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQGYI 508

Query: 633 PDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLV 692
           P   + L D+EDEEK   + +HSE+LA+ + L+ S   + IRIVKNLRVC DCH  IKL+
Sbjct: 509 PHTSNVLADIEDEEKESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVCGDCHMAIKLI 568

Query: 693 SKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           SKVY REI++RDR+RFHH+K G CSCKDYW
Sbjct: 569 SKVYDREIIVRDRSRFHHFKGGACSCKDYW 598



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/442 (29%), Positives = 211/442 (47%), Gaps = 58/442 (13%)

Query: 7   PTKPLTLPTSTAISSC----------SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTS 56
           P  P T P + A+  C           SL   KQ HA+ L+ +      + LL K LL  
Sbjct: 6   PRAPCTHPAAAALRHCVALLRLHLASPSLATAKQLHARALRAAPGVTPSHPLLAKHLL-- 63

Query: 57  FSLPTTTPSSLYYALSIFSQI-PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI 115
           F L       L YA+++ S + P+P     N  +R  + S RP+ AL +  + L      
Sbjct: 64  FHLAALKAPPLRYAVAVLSGLLPSPDPFSLNTVLRIFASSARPRVALALHRRHLAPP--- 120

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           D  ++PP+L+A AR   L  G  +H    K G  S  FV+  LV +YGACG    A  +F
Sbjct: 121 DTHTYPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVF 180

Query: 176 DKMS--YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           D++    R++V W+ +++G+  NG  +EVL +F EM      PD   +  +L+AC+  G 
Sbjct: 181 DEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGV 240

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           L+ G  VH F+    +  +AH  + LI +YA CG +D                       
Sbjct: 241 LALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVD----------------------- 277

Query: 294 YSRAGQVEDARLIFDQM-VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
                   DAR +F +M V + ++ W+++I G A N    +AL+LF+ M+   + P ++T
Sbjct: 278 --------DARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEIT 329

Query: 353 MLSVISACAHLGVLDQAQRIHLYID--KNAFGGDLRVNN--AIIDMYAKCGSLESAREVF 408
           M+ V+ AC+H G++D   R   Y D  K  +G   R+ +   ++D+  + G +E A    
Sbjct: 330 MVGVLYACSHCGLVDDGFR---YFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYI 386

Query: 409 ERMR-RRNVISWTSMINAFAIH 429
             M    N + W +++ A A+H
Sbjct: 387 TTMPLEPNAVVWRTLLGACAMH 408


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 258/751 (34%), Positives = 399/751 (53%), Gaps = 93/751 (12%)

Query: 32  HAQILKLSHSHHSQNSLLLKLLLTSFS----LP-------------TTTPSSLYYALS-- 72
           HA IL+     H   + LL  LLT+++    LP               T +SL  AL+  
Sbjct: 33  HALILRTLP--HPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARA 90

Query: 73  --------IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE--GLTIDRFSFPP 122
                   +F+ +P   +   N  +   S +     A   ++ +L +  G+   R +   
Sbjct: 91  GLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSG 150

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS--- 179
           ++   +       G QVH    +LGFG+  F  + LV MY   G I DAR +FD+M    
Sbjct: 151 VVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKN 210

Query: 180 ----------------------------YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
                                        RD + W+ M+ G  QNGL  E L++F  M+ 
Sbjct: 211 VVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRA 270

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
             V  D+     IL+AC     L  G+ +H +I                T Y +      
Sbjct: 271 EGVGIDQYTFGSILTACGALAALEEGKQIHAYITR--------------TCYED------ 310

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
                      N+ V +A+V  YS+   V  A  +F +M+ K++I W+AMI GY +N   
Sbjct: 311 -----------NVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCG 359

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           +EA+++F+EMQ  G+KPD  T+ SVIS+CA+L  L++  + H     +     + V+NA+
Sbjct: 360 EEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNAL 419

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           + +Y KCGS+E A  +F+ M   + +SWT+++  +A  G A+  +  F KM  + + P+G
Sbjct: 420 VTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDG 479

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
           VTFIGVL ACS +GLVD+GR  F SM  +++I P  +HY CM+DL+ R+  L++A E ++
Sbjct: 480 VTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIK 539

Query: 512 TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
            MP  P+   W +L++ACR+ G++E+ ++AA+ LL+LDP +  + VLL +++A    W D
Sbjct: 540 QMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWND 599

Query: 572 VGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY 631
           V +LR+ M++R + KE  CS I+  N+V+ F   D+SH  +  IYEKL  + S++   GY
Sbjct: 600 VAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGY 659

Query: 632 VPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKL 691
            PD+ S L D+ D EK  ++  HSEKLA+ +GLI    +  IRIVKNLRVC DCHN  K 
Sbjct: 660 KPDVSSVLHDVADAEKVHMLSHHSEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHNATKF 719

Query: 692 VSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +SK+  R+I++RD  RFH + +G+CSC D+W
Sbjct: 720 ISKITGRDILVRDAVRFHKFSNGICSCGDFW 750


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/636 (36%), Positives = 369/636 (58%), Gaps = 12/636 (1%)

Query: 97  RPKHALKVFLKMLNEGLTIDR----FSFPPILKAIARAEGLLEGMQVHGLGT--KLGFGS 150
           R ++     +  L+ G  ID     +   P+ K+I     LL G+   G  T  ++ F  
Sbjct: 288 RNEYTWSTMIAALSHGGRIDAAIAVYGRDPV-KSIPSQTALLTGLARCGRITEARILFEQ 346

Query: 151 --DPFVQT--GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLF 206
             DP V +   ++  Y   G + +A+ +FD+M +R+ + W+ MI GY QNG  +E L+L 
Sbjct: 347 IPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLL 406

Query: 207 EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
           + +  + + P    L+    ACS  G L  G  VH   +      ++++ + LI+MY  C
Sbjct: 407 QALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKC 466

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
             M+  + +F+++ +K+ V   + ++   +   +EDAR IFD M+ +D++ W+ +IS YA
Sbjct: 467 RNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYA 526

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
           +     EA++ F  M     KP+   +  ++S C  LG     Q+IH    K+    +L 
Sbjct: 527 QAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELI 586

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
           V NA++ MY KCG  +S  +VF+ M  R++ +W + I   A HG  R A+  +  M+   
Sbjct: 587 VANALMSMYFKCGCADS-HKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVG 645

Query: 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
           + PN VTF+G+L ACSHAGLVDEG + F SM+ +Y + P  EHY CMVDL GR   ++ A
Sbjct: 646 VLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGA 705

Query: 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566
            + +  MP  P+ VIW +L+ AC++H   E+   AA++L   +P + G  V+LSNIY+  
Sbjct: 706 EKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSL 765

Query: 567 KRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL 626
             W +V ELRK MK+RG+ KE  CS +++ N+V+ F+T D+ H++ ++I   L ++ + L
Sbjct: 766 GMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLL 825

Query: 627 KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCH 686
           +  GYVPD    L D+++E+K   +L+HSEKLA+ YGL+ + K   I+I+KNLR+C DCH
Sbjct: 826 RGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCH 885

Query: 687 NFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            FIK VS V  R+I IRD  RFHH+++G CSC D+W
Sbjct: 886 TFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 192/418 (45%), Gaps = 48/418 (11%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++F Q+P          I       +      +F  M +EG + D+ +F  +L A+  
Sbjct: 176 AWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTG 235

Query: 130 AE--GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL-MFDKMSYRDIVPW 186
            +  G+LE ++   L  K GF SD  + T ++ +Y      LD  +  FD M  R+   W
Sbjct: 236 LQDLGVLEVLRP--LVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTW 293

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           S MI      G  D  + ++        +P + + S                        
Sbjct: 294 STMIAALSHGGRIDAAIAVYGR------DPVKSIPS------------------------ 323

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
                    Q+ L+T  A CG +  A+ LF+++    +V   AM++GY + G V++A+ +
Sbjct: 324 ---------QTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKEL 374

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           FD+M  ++ I W+ MI+GYA+N   +EAL L   +   GM P   ++ S   AC+H+G L
Sbjct: 375 FDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGAL 434

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           +  +++H    K     +  V NA+I MY KC ++E  R+VF RMR ++ +SW S I A 
Sbjct: 435 ETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAAL 494

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
             +    +A   F+ M    +    V++  ++ A + A   DE  E F +M +E+  P
Sbjct: 495 VQNNMLEDARHIFDNMLSRDV----VSWTTIISAYAQAERGDEAVEFFKTMLHEHEKP 548



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 186/375 (49%), Gaps = 21/375 (5%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           G++ +AR +FD M +RDI+ W+ MI  Y  +G+ ++   LF+ +   NV    +    +L
Sbjct: 47  GRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATI----LL 102

Query: 226 SACSRAGNLSYGEAVHEFIID-NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           S  +R G +     V + + + N VA +A     +++ Y   G + MA+ LFD +  +++
Sbjct: 103 SGYARLGRVLDARRVFDGMPERNTVAWNA-----MVSCYVQNGDITMARRLFDAMPSRDV 157

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
               +MV+GY  + Q+ DA  +F QM +++L+ W+ MISGY       +   +F  M   
Sbjct: 158 TSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHE 217

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS-LES 403
           G  PD+    SV+SA   L  L   + +   + K  F  D+ +  +I+++Y +  S L+ 
Sbjct: 218 GASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDI 277

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
           A + F+ M  RN  +W++MI A +  G    A+  + +   +SI P+    +  L  C  
Sbjct: 278 AIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALLTGLARC-- 334

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
            G + E R +F  + +     P    +  M+  + +  ++ EA EL + MPF  N + W 
Sbjct: 335 -GRITEARILFEQIPD-----PIVVSWNAMITGYMQNGMVDEAKELFDRMPFR-NTISWA 387

Query: 524 SLMAACRVHGEIELA 538
            ++A    +G  E A
Sbjct: 388 GMIAGYAQNGRSEEA 402



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/396 (22%), Positives = 172/396 (43%), Gaps = 65/396 (16%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P   +      I   + + R + AL +   +   G+     S      A + 
Sbjct: 371 AKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSH 430

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC------------------------ 165
              L  G QVH L  K G   + +V   L+ MYG C                        
Sbjct: 431 IGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSF 490

Query: 166 -------GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
                    + DAR +FD M  RD+V W+ +I  Y Q    DE +  F+ M   + +P+ 
Sbjct: 491 IAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNS 550

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
            +L+ +LS C   G+   G+ +H   I + +  +  + + L++MY  CGC D  K     
Sbjct: 551 PILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCADSHK----- 605

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
                                      +FD M E+D+  W+  I+G A++   +EA+K++
Sbjct: 606 ---------------------------VFDSMEERDIFTWNTFITGCAQHGLGREAIKMY 638

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA-IIDMYAK 397
             M+  G+ P++VT + +++AC+H G++D+  +    + ++     L  + A ++D+  +
Sbjct: 639 EHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGR 698

Query: 398 CGSLESARE-VFERMRRRNVISWTSMINAFAIHGDA 432
            G ++ A + +++     + + W++++ A  IH +A
Sbjct: 699 TGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNA 734



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 136/293 (46%), Gaps = 17/293 (5%)

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
           ALD    S  I   A  G +  A+ +FD +  ++++   +M+S Y  +G +EDAR++FD 
Sbjct: 30  ALDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDA 89

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML--SVISACAHLGVLD 367
           +   ++   + ++SGYA      +A ++F+ M      P++ T+   +++S     G + 
Sbjct: 90  ISGGNVRTATILLSGYARLGRVLDARRVFDGM------PERNTVAWNAMVSCYVQNGDIT 143

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
            A+R+   +       D+   N+++  Y     +  A  +F++M +RN+++WT MI+ + 
Sbjct: 144 MARRLFDAMPSR----DVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYV 199

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG-REIFASMTNEYNIPPK 486
                      F  M  E   P+   F  VL A +  GL D G  E+   +  +      
Sbjct: 200 RIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVT--GLQDLGVLEVLRPLVLKTGFESD 257

Query: 487 YEHYGCMVDLFGR-ANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
                 +++++ R A+ L  A++  + M    N   W +++AA    G I+ A
Sbjct: 258 VVIGTSILNVYTRDASALDIAIKFFDGM-VERNEYTWSTMIAALSHGGRIDAA 309


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/572 (39%), Positives = 343/572 (59%), Gaps = 39/572 (6%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D F    ++  Y     +  ARL FD+M  +D   W+ MI G+ QNG+ D+   LF  M 
Sbjct: 67  DIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMP 126

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
                                             + N+V+ +A     +I+ Y   G +D
Sbjct: 127 ----------------------------------VRNSVSWNA-----MISGYVESGDLD 147

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
           +AK LF+   ++++V  TAM++G+ + G++E A   F++M  K+L+ W+AMI+GY EN  
Sbjct: 148 LAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQ 207

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
            +  LKLF  M   G +P+  ++ SV+  C++L  L   +++H  I K+    ++    +
Sbjct: 208 AENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTS 267

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           ++ MY KCG LE A ++F  M +++V++W +MI+ +A HG    AL  F+KM+DE + P+
Sbjct: 268 LLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPD 327

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
            +TF+ VL AC+HAG VD G E F SM  +Y +  K +HY C+VDL GR   L EA++L+
Sbjct: 328 WITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLI 387

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
           + MPF P+  I+G+L+ ACR+H  +ELAEFAAK LL LDP+     V L+N+YA   RW 
Sbjct: 388 KKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWD 447

Query: 571 DVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAG 630
            V  +R+SMK+  ++K    S IE+ + V+EF + DR H +   I+EKLNE+  +++ AG
Sbjct: 448 HVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAG 507

Query: 631 YVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIK 690
           YVPD+  AL D+ +E+K++++L HSEKLA+ YGLI     + IR+ KNLRVC DCH+  K
Sbjct: 508 YVPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATK 567

Query: 691 LVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            +S +  R I++RD TRFHH++ G CSC DYW
Sbjct: 568 YISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 1/210 (0%)

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F ++P       N  I     + + ++ LK+F +M+  G   +  S   +L   +    L
Sbjct: 184 FEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSAL 243

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
             G QVH L  K     +    T L+ MY  CG + DA  +F  M  +D+V W+ MI GY
Sbjct: 244 KLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGY 303

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDNNVALD 252
            Q+G  ++ L LF++M+   ++PD +    +LSAC+ AG +  G E  +  + D  V   
Sbjct: 304 AQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAK 363

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
               + ++ +    G +  A  L  K+  K
Sbjct: 364 PDHYTCVVDLLGRGGKLVEAVDLIKKMPFK 393



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 133/316 (42%), Gaps = 63/316 (19%)

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE------------NNH 330
           N++ S  +++ + R+G +  A  +F+ M  K  + W++M++GY+             +  
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 331 PQEALKLFNEMQVCGMK----------------PDKVTMLSVISACAHLGVLDQAQRIHL 374
           P+  +  +N M  C +                  D  +  ++IS  +  G++DQA+ + L
Sbjct: 64  PEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFL 123

Query: 375 Y------IDKNAF------GGDLRVN---------------NAIIDMYAKCGSLESAREV 407
                  +  NA        GDL +                 A+I  + K G +E A + 
Sbjct: 124 VMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKY 183

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           FE M  +N+++W +MI  +  +  A N L  F +M +    PN  +   VL  CS+   +
Sbjct: 184 FEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSAL 243

Query: 468 DEGREIFASMTN---EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGS 524
             G+++   +      +NI         ++ ++ +   L +A +L   MP   +VV W +
Sbjct: 244 KLGKQVHQLICKSPVSWNITAGTS----LLSMYCKCGDLEDAWKLFLVMP-QKDVVTWNA 298

Query: 525 LMAACRVHGEIELAEF 540
           +++    HG  E A +
Sbjct: 299 MISGYAQHGAGEKALY 314


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/717 (34%), Positives = 397/717 (55%), Gaps = 39/717 (5%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           PTK   +    A +S  SL    + H QIL+       +  + +   L +         S
Sbjct: 104 PTKVTYVAILNACASTESLKDGMEIHGQILQQGF----EGDVFVGTALINM---YNKCGS 156

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           +  A   F ++           I A     +   A  ++ +M  +G+  ++ +   +  A
Sbjct: 157 VRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNA 216

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
                 L EG  ++ L +     SD  V    + M+G  G + DAR +F+ M  RD+V W
Sbjct: 217 YGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTW 276

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           +++I  Y QN  F E + LF  ++   ++ +++    +L+  +   +L+ G+ +HE + +
Sbjct: 277 NIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKE 336

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
                                        +D+    ++VV+TA++S Y R      A  I
Sbjct: 337 AG---------------------------YDR----DVVVATALMSLYGRCEAPGQAWKI 365

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F  M  KD+I W+ M   YA+N   +EAL+LF EMQ+ G +P   T+++V+  CAHL  L
Sbjct: 366 FVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAAL 425

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
            + ++IH +I +N F  ++ V  A+I+MY KCG +  AR VFE+M +R+++ W SM+ A+
Sbjct: 426 QKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAY 485

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           A HG     L  FN+M+ +    + V+F+ VL A SH+G V +G + F +M  +++I P 
Sbjct: 486 AQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPT 545

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFA-PNVVIWGSLMAACRVHGEIELAEFAAKQL 545
            E YGC+VDL GRA  ++EA+++V  +    P+ ++W +L+ ACR H + + A+ AA+Q+
Sbjct: 546 PELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQV 605

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
           L+ DP H GA V+LSN+YA    W  V  +RK M+ RG+ KE   S IE+ N V+EFL  
Sbjct: 606 LERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEG 665

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           DRSH +   IY +L+ + SE++ AGY+PD    L D+EDE K +++ +HSE+LA+ +GL+
Sbjct: 666 DRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLM 725

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S+   + +R++KNLRVC DCH   K +SK+  REI++RD  RFH++KDG CSCKDYW
Sbjct: 726 STPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 193/418 (46%), Gaps = 33/418 (7%)

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           D   F  +L+  + A+ +  G +VH      GF  +  V   L+ MY  CG + +A+ +F
Sbjct: 4   DTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 63

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           + +  +D+  W+ MI  Y Q G +D  L +F +M+  +V P ++    IL+AC+   +L 
Sbjct: 64  EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLK 123

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G  +H  I+      D  + + LI MY  CG +   +G +D                  
Sbjct: 124 DGMEIHGQILQQGFEGDVFVGTALINMYNKCGSV---RGAWDS----------------- 163

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
                      F ++  +D++ W+AMI+   +++    A  L+  MQ+ G+ P+K+T+ +
Sbjct: 164 -----------FKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYT 212

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           V +A      L + + I+  +       D+RV N+ ++M+   G L  AR +FE M  R+
Sbjct: 213 VFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRD 272

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V++W  +I  +  + +   A+  F +++ + I  N +TF+ +L   +    + +G+ +  
Sbjct: 273 VVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGK-VIH 331

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            +  E            ++ L+GR     +A ++   M  + +V+ W  +  A   +G
Sbjct: 332 ELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMG-SKDVITWTVMCVAYAQNG 388



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 158/359 (44%), Gaps = 52/359 (14%)

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
           +PD      +L  CS A N+ +G  VH  + D     +  +   LI MYA C        
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQC-------- 53

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
                                  G V +A+ +F+ +  KD+  W+ MI  Y +      A
Sbjct: 54  -----------------------GSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRA 90

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
           L +F +MQ   + P KVT +++++ACA    L     IH  I +  F GD+ V  A+I+M
Sbjct: 91  LGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINM 150

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y KCGS+  A + F+R+  R+V+SWT+MI A   H     A   + +M+ + + PN +T 
Sbjct: 151 YNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITL 210

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
             V  A      + EG+ I+ S+ +   +          +++FG A LL +A  L E M 
Sbjct: 211 YTVFNAYGDPHYLSEGKFIY-SLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDM- 268

Query: 515 FAPNVVIWGSLMA----------ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563
              +VV W  ++           A R+ G ++     A         +D   VL+ N+Y
Sbjct: 269 VDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKA---------NDITFVLMLNVY 318


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 210/440 (47%), Positives = 304/440 (69%)

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           N+ VSTA+V+ Y     V DAR +FD++ +++++ W+A+I+GY  N   ++ + +F EMQ
Sbjct: 176 NVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQ 235

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
           + G KP +VTM+ V+ ACAHLG L+Q + I  YID N    ++ V  A+IDMYAKCG ++
Sbjct: 236 IAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVD 295

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            A ++F+ MR +NV +W  +I+ +A++G   +AL  F++M  E   P+ VTF+GVL AC 
Sbjct: 296 EAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACC 355

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
           H GLV+EGR  F SM  E+ + P+ EHYGCMVDL GRA  L EA +L++ M   P+ +IW
Sbjct: 356 HQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIW 415

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582
             L+ ACR+HG I+L EFA K+LL+L+P++    VLL+N+YA+D+RW  VGE+R+ M  R
Sbjct: 416 RELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCR 475

Query: 583 GILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDL 642
            + K   CS IE++N VYEF+ ++      +++Y+ L ++  +LK AGYV D   A  D+
Sbjct: 476 RVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADTGMASYDI 535

Query: 643 EDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVI 702
           E+EEK   +++HSEKLAL +GL+ S     +RIVKNLR+C+DCH F K+VSKVY R+I +
Sbjct: 536 EEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDISV 595

Query: 703 RDRTRFHHYKDGVCSCKDYW 722
           RDR RFHH+  G CSCKDYW
Sbjct: 596 RDRNRFHHFVGGACSCKDYW 615



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 132/466 (28%), Positives = 239/466 (51%), Gaps = 51/466 (10%)

Query: 2   STLSQPTKPLTL-PTST-AISSCSSLTHMKQT-HAQILKLSHSHHSQNSLLLKLL----- 53
           S LSQ T  LT+ P+ST A++ C +   + ++ H+ + K   +H   N +L +++     
Sbjct: 13  SNLSQWTHNLTIRPSSTSALTLCENPPQITESKHSHLTKSISNHAHMNQMLSQMIMNYIP 72

Query: 54  ---LTSFSLPTTTPSSLYYALS--IFSQIPA-PPSRVSNKFIRAISWSHRPKHALKVFLK 107
              L    L   + SS  +A S  +F+Q      S + N  IR  + S++  H++ ++ +
Sbjct: 73  IDHLNLMKLIDFSVSSHGFAASALLFTQFYGFIDSDLCNSMIRCYTDSNKHLHSVFIYTQ 132

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           M   G+  D  +FP +LK++A+      G  +H    ++GF S+ +V T LV MYG C  
Sbjct: 133 MWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSS 192

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
           + DAR +FD++  R+IV W+ +I GY  N +F +V+++F EM+++  +P E+ +  +L A
Sbjct: 193 VSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLA 252

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           C+  G L+ G  + ++I  N + L+  + + LI MYA CG +D A+ +F  + +KN+   
Sbjct: 253 CAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTW 312

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
             ++SGY                               A N   + AL+ F+ M +   K
Sbjct: 313 NVLISGY-------------------------------AMNGRGESALQAFSRMIMEKFK 341

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAR 405
           PD+VT L V+ AC H G++++  R +    K  FG   R+ +   ++D+  + G L+ A+
Sbjct: 342 PDEVTFLGVLCACCHQGLVNEG-RTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQ 400

Query: 406 EVFERMRRR-NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           ++ + M  + + I W  ++ A  IHG+ +       K+ +  ++PN
Sbjct: 401 QLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLE--LEPN 444



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 127/252 (50%), Gaps = 9/252 (3%)

Query: 305 LIFDQM---VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
           L+F Q    ++ DL   ++MI  Y ++N    ++ ++ +M   G+ PD  T  +V+ + A
Sbjct: 96  LLFTQFYGFIDSDLC--NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVA 153

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
            L   +  + IH  I +  F  ++ V+ A+++MY  C S+  AR+VF+ +  RN++SW +
Sbjct: 154 QLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNA 213

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           +I  +  +   R  +  F +M+     P  VT +GVL AC+H G +++GR I     +  
Sbjct: 214 LITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWI-DDYIDHN 272

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA--ACRVHGEIELAE 539
            +         ++D++ +  ++ EA ++ + M    NV  W  L++  A    GE  L  
Sbjct: 273 RLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMR-VKNVYTWNVLISGYAMNGRGESALQA 331

Query: 540 FAAKQLLQLDPD 551
           F+   + +  PD
Sbjct: 332 FSRMIMEKFKPD 343


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/705 (34%), Positives = 385/705 (54%), Gaps = 39/705 (5%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           + +C +L   ++ H    KL    +   +  L  + + F            A S+F  +P
Sbjct: 225 LKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGI-------ARSLFDDMP 277

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
                  N  I  +  +     AL V  +M  EG+ ++  +   IL    +   +   M 
Sbjct: 278 FRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAML 337

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H    K G   D FV   L+ MY   G + DAR  F +M   D+V W+ +I  Y QN  
Sbjct: 338 IHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDD 397

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
                  F +M+++  +PD + L  + S  +++ +     +VH FI              
Sbjct: 398 PVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFI-------------- 443

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
                       M +G     L++++V+  A+V  Y++ G ++ A  +F+ ++ KD+I W
Sbjct: 444 ------------MRRGW----LMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISW 487

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCG-MKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           + +I+GYA+N    EA++++  M+ C  + P++ T +S++ A AH+G L Q  RIH  + 
Sbjct: 488 NTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVI 547

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           K     D+ V   +ID+Y KCG L  A  +F ++ + + ++W ++I+   IHG A   L 
Sbjct: 548 KTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLK 607

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F +M DE + P+ VTF+ +L ACSH+G V+EG+  F  M  EY I P  +HYGCMVDL 
Sbjct: 608 LFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLL 666

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557
           GRA  L  A   ++ MP  P+  IWG+L+ ACR+HG IEL +FA+ +L ++D  + G  V
Sbjct: 667 GRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYV 726

Query: 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYE 617
           LLSNIYA   +W+ V ++R   +ERG+ K    S IE+N +V  F T ++SH +  +IYE
Sbjct: 727 LLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYE 786

Query: 618 KLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVK 677
           +L  + +++K  GY+PD    L D+E++EK  ++  HSE+LA+ +G+IS+   S IRI K
Sbjct: 787 ELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFK 846

Query: 678 NLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           NLRVC DCHN  K +S++  REIV+RD  RFHH+KDG+CSC DYW
Sbjct: 847 NLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 148/529 (27%), Positives = 260/529 (49%), Gaps = 53/529 (10%)

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML-NEGLTIDRFSFPPILKAIARAEG 132
           F QIP       N  I A   +     A+  F ++L    +  D ++FPP+LKA      
Sbjct: 174 FDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGT--- 230

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L++G ++H    KLGF  + FV   L+ MY   G    AR +FD M +RD+  W+ MI G
Sbjct: 231 LVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISG 290

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
             QNG   + L++ +EM++  ++ + + +  IL  C + G++S    +H ++I + +  D
Sbjct: 291 LIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFD 350

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             + + LI MYA  G ++ A+  F                                QM  
Sbjct: 351 LFVSNALINMYAKFGNLEDARKAF-------------------------------QQMFI 379

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
            D++ W+++I+ Y +N+ P  A   F +MQ+ G +PD +T++S+ S  A       ++ +
Sbjct: 380 TDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSV 439

Query: 373 HLYIDKNAF-GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           H +I +  +   D+ + NA++DMYAK G L+SA +VFE +  ++VISW ++I  +A +G 
Sbjct: 440 HGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGL 499

Query: 432 ARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
           A  A+  +  M++ + I PN  T++ +L A +H G + +G  I   +    N+       
Sbjct: 500 ASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKT-NLHLDVFVA 558

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQL 548
            C++D++G+   L +A+ L   +P   + V W ++++   +HG  E  L  F       +
Sbjct: 559 TCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGV 617

Query: 549 DPDHDGALVLLS----NIYAKDKRWQDVGELRKSMKERGI---LKERAC 590
            PDH   + LLS    + + ++ +W       + M+E GI   LK   C
Sbjct: 618 KPDHVTFVSLLSACSHSGFVEEGKW-----CFRLMQEYGIKPSLKHYGC 661



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 173/360 (48%), Gaps = 25/360 (6%)

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
           SYG       ID N   D    S+  T +A C    +   L     ++++ +ST +V+ Y
Sbjct: 110 SYGLGNQNEEIDFNFLFD----SSTKTPFAKC----LHALLVVAGKVQSIFISTRLVNLY 161

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE-MQVCGMKPDKVTM 353
           +  G V  +R  FDQ+ +KD+  W++MIS Y  N H  EA+  F + + V  ++PD  T 
Sbjct: 162 ANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTF 221

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
             V+ AC   G L   +RIH +  K  F  ++ V  ++I MY++ G    AR +F+ M  
Sbjct: 222 PPVLKAC---GTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPF 278

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           R++ SW +MI+    +G+A  AL   ++M+ E I  N VT + +L  C   G +      
Sbjct: 279 RDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIST---- 334

Query: 474 FASMTNEYNIPPKYEH----YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
            A + + Y I    E        +++++ +   L +A +  + M F  +VV W S++AA 
Sbjct: 335 -AMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQM-FITDVVSWNSIIAAY 392

Query: 530 RVHGEIELAE--FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587
             + +   A   F   QL    PD    LV L++I A+ +  ++   +   +  RG L E
Sbjct: 393 EQNDDPVTAHGFFVKMQLNGFQPDLL-TLVSLASIVAQSRDCKNSRSVHGFIMRRGWLME 451


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/698 (34%), Positives = 380/698 (54%), Gaps = 65/698 (9%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPIL 124
           SL  A  +F ++        N  I + +   +PK AL++F +M NE G   D  +   +L
Sbjct: 177 SLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVL 236

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
              A       G Q+H          + FV   LV MY  CG + +A  +F  MS +D+V
Sbjct: 237 PPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVV 296

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMK---------------------------------- 210
            W+ M+ GY Q G F++ + LFE+M+                                  
Sbjct: 297 SWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM 356

Query: 211 -MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
             S ++P+E+ L  +LS C+  G L +G+ +H + I   + L  +               
Sbjct: 357 LSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGD----------- 405

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV--EKDLICWSAMISGYAE 327
                       +N+V++  ++  Y++  +V+ AR +FD +   E+D++ W+ MI GY++
Sbjct: 406 ------------ENMVINQ-LIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQ 452

Query: 328 NNHPQEALKLFNEM--QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG-D 384
           +    +AL+L +EM  + C  +P+  T+   + ACA L  L   ++IH Y  +N      
Sbjct: 453 HGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVP 512

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
           L V+N +IDMYAKCGS+  AR VF+ M  +N ++WTS++  + +HG    AL  F++M+ 
Sbjct: 513 LFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRR 572

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
                +GVT + VLYACSH+G++D+G E F  M   + + P  EHY C+VDL GRA  L 
Sbjct: 573 IGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLN 632

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
            AL L+E MP  P  V+W + ++ CR+HG++EL E+AA+++ +L  +HDG+  LLSN+YA
Sbjct: 633 AALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYA 692

Query: 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVIS 624
              RW+DV  +R  M+ +G+ K   CS +E       F   D++H    +IY+ L + + 
Sbjct: 693 NAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQ 752

Query: 625 ELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCED 684
            +K  GYVP+   AL D++DEEK +++  HSEKLAL YG++++ + + IRI KNLRVC D
Sbjct: 753 RIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGD 812

Query: 685 CHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           CH     +S++   +I++RD +RFHH+K+G CSCK YW
Sbjct: 813 CHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 183/570 (32%), Positives = 294/570 (51%), Gaps = 32/570 (5%)

Query: 15  TSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT-TTPSSLYYALSI 73
           T   I  C +++ +K  H ++L            +L L LTS  + T  +   L +A+S+
Sbjct: 31  TPPFIHKCKTISQVKLIHQKLLSFG---------ILTLNLTSHLISTYISVGCLSHAVSL 81

Query: 74  FSQIPAPPSRVS--NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
             + P   + V   N  IR+   +      L +F  M +   T D ++FP + KA     
Sbjct: 82  LRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEIS 141

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
            +  G   H L    GF S+ FV   LV MY  C  + DAR +FD+MS  D+V W+ +I+
Sbjct: 142 SVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIE 201

Query: 192 GYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
            Y + G     L +F  M       PD + L  +L  C+  G  S G+ +H F + + + 
Sbjct: 202 SYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMI 261

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
            +  + + L+ MYA CG MD A  +F  + +K++V   AMV+GYS+ G+ EDA  +F++M
Sbjct: 262 QNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKM 321

Query: 311 VEK----DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
            E+    D++ WSA ISGYA+     EAL +  +M   G+KP++VT++SV+S CA +G L
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381

Query: 367 DQAQRIHLY-------IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM--RRRNVI 417
              + IH Y       + KN  G +  V N +IDMYAKC  +++AR +F+ +  + R+V+
Sbjct: 382 MHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVV 441

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESID--PNGVTFIGVLYACSHAGLVDEGREIFA 475
           +WT MI  ++ HGDA  AL   ++M +E     PN  T    L AC+    +  G++I A
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHA 501

Query: 476 -SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
            ++ N+ N  P +    C++D++ +   + +A  + + M  A N V W SLM    +HG 
Sbjct: 502 YALRNQQNAVPLFVS-NCLIDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTGYGMHGY 559

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
            E A     ++ ++    DG + LL  +YA
Sbjct: 560 GEEALGIFDEMRRIGFKLDG-VTLLVVLYA 588


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/715 (33%), Positives = 390/715 (54%), Gaps = 52/715 (7%)

Query: 18  AISSCSSLTHMKQT---HAQILKLSHSHHSQNSLLLK---LLLTSFSLPTTTPSSLYYAL 71
           AI  CSS   +KQ    HA IL+         + LL+   +L T+          L  A 
Sbjct: 64  AIGVCSSSKDLKQGQLLHAMILE---------TRLLEFDIILGTALITMYARCRDLELAR 114

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLN---EGLTIDRFSFPPILKAIA 128
             F ++        N  I   S +   + ALK++  M++   EG+  D  +F   L A  
Sbjct: 115 KTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACT 174

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
               + +G ++       G+ SD  VQ  L+ MY  CG +  AR +FD++  RD++ W+ 
Sbjct: 175 VVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNT 234

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI GY + G   + L LF+ M  ++ +P+ +    +L+AC+   +L  G A+H  + ++ 
Sbjct: 235 MISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDG 294

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D  + + L+ MY  C                              +  +E+AR +F+
Sbjct: 295 YESDLVIGNVLLNMYTKC------------------------------SSSLEEARQVFE 324

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           +M  +D+I W+ +I  Y +    ++AL +F +MQ+  + P+++T+ +V+SACA LG   Q
Sbjct: 325 RMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQ 384

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            + +H  I       D+ + N++++MY +CGSL+    VF  +R ++++SW+++I A+A 
Sbjct: 385 GKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQ 444

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG +R  L  F ++  E +  + VT +  L ACSH G++ EG + F SM  ++ + P Y 
Sbjct: 445 HGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYR 504

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           H+ CMVDL  RA  L  A  L+  MPF P+ V W SL++ C++H + + A   A +L +L
Sbjct: 505 HFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFEL 564

Query: 549 DP-DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
           +  D    + LLSN+YA+  RW DV   RK+   R   K   CS IE+N+ V+EF+  D+
Sbjct: 565 ESEDEHSTVTLLSNVYAEAGRWDDV---RKTRNRRAARKNPGCSYIEINDTVHEFVAGDK 621

Query: 608 SHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS 667
           SH + + I  ++  +  ++K AGYVPD+   L ++++EEK +++ +HSEKLA+ YGLIS+
Sbjct: 622 SHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLIST 681

Query: 668 KKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              + + IVKNLR C DCH   K +S++  R+IV+RD TRFHH+++G CSCKDYW
Sbjct: 682 PPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/406 (31%), Positives = 209/406 (51%), Gaps = 38/406 (9%)

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MYG CG + DA  +F  + + + V W++++  + +NG + E L  +  M +  + PD  +
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNN-VALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
               +  CS + +L  G+ +H  I++   +  D  L + LITMYA C  +++A+  FD++
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
             K LV   A+++GYSR G    A  I+  MV K                 P+       
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKS----------------PE------- 157

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
                GMKPD +T  S + AC  +G + Q + I      + +  D  V NA+I+MY+KCG
Sbjct: 158 -----GMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCG 212

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           SLESAR+VF+R++ R+VI+W +MI+ +A  G A  AL  F +M      PN VTFIG+L 
Sbjct: 213 SLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLT 272

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR-ANLLREALELVETMPFAPN 518
           AC++   +++GR I   +  E            +++++ + ++ L EA ++ E M    +
Sbjct: 273 ACTNLEDLEQGRAIHRKV-REDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMR-TRD 330

Query: 519 VVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALVLLSNI 562
           V+ W  L+ A   +G+ +  L  F   QL  + P+     + LSN+
Sbjct: 331 VITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNE----ITLSNV 372



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 18/172 (10%)

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
           MY KCGS+  A  VF  +   N +SWT ++ AFA +G  R AL ++ +M  E + P+G  
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
           F+  +  CS +  + +G+ + A +     +         ++ ++ R   L  A +  + M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 514 PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565
                +V W +L+A    +G                 DH GAL +  ++ +K
Sbjct: 121 G-KKTLVTWNALIAGYSRNG-----------------DHRGALKIYQDMVSK 154


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/626 (38%), Positives = 361/626 (57%), Gaps = 38/626 (6%)

Query: 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
            AL +F  M    + +   SF  I+K  A  + L    Q+H    K GF  D  ++T L+
Sbjct: 282 EALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALM 341

Query: 160 GMYGACGKILDARLMFDKMSY-RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
             Y  C  +LDA  +F +  +  ++V W+ MI G+ QN   +E + LF EMK   V P+E
Sbjct: 342 VAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNE 401

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
              S IL+A      +S  E VH  ++  N                              
Sbjct: 402 FTYSVILTALPV---ISPSE-VHAQVVKTNYE---------------------------- 429

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
              ++  V TA++  Y + G+V++A  +F  +  KD++ WSAM++GYA+    + A+K+F
Sbjct: 430 ---RSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIF 486

Query: 339 NEMQVCGMKPDKVTMLSVISACA-HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           +E+   G+KP++ T  S+++ CA     + Q ++ H +  K+     L V++A++ MYAK
Sbjct: 487 SELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAK 546

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
            G +ESA EVF+R R ++++SW SMI+ +A HG A  AL  F +MK   +  + VTFIGV
Sbjct: 547 KGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGV 606

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
             AC+HAGLV+EG + F  M  +  I P  EH  CMVDL+ RA  L +A+++++ MP   
Sbjct: 607 FAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLA 666

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
              IW +++AACRVH + EL   AA++++ + P+   A VLLSN+YA+   WQ+  ++RK
Sbjct: 667 GSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRK 726

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            M ER + KE   S IE+ N+ Y FL  DRSH   DQIY KL ++ + LK  GY PD   
Sbjct: 727 LMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSY 786

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
            L D++DE K  V+  HSE+LA+ +GLI++ K S + I+KNLRVC DCH  IKL++K+  
Sbjct: 787 VLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHVVIKLIAKIEE 846

Query: 698 REIVIRDRTRFHHY-KDGVCSCKDYW 722
           REIV+RD  RFHH+  DGVCSC D+W
Sbjct: 847 REIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 218/487 (44%), Gaps = 46/487 (9%)

Query: 57  FSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTID 116
           +     + S LYYA ++F + P          +   S   R + A ++FL + + G+ +D
Sbjct: 37  YCFGAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMD 96

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
              F  +LK  A     L G Q+H    K GF  D  V T LV  Y       D R +FD
Sbjct: 97  CSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFD 156

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
           +M  R++V W+ +I GY +N L +EVL LF  M+    +P+    +  L   +  G    
Sbjct: 157 EMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGR 216

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G  VH  ++ N +     + ++LI +Y  CG +  A+ LFDK  +K++V   +M+     
Sbjct: 217 GLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI----- 271

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
                                     SGYA N    EAL +F  M++  ++  + +  S+
Sbjct: 272 --------------------------SGYAANGLDLEALGMFYSMRLNHVRLSESSFASI 305

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF-ERMRRRN 415
           I  CA+L  L   +++H  + K  F  D  +  A++  Y+KC ++  A  +F E     N
Sbjct: 306 IKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGN 365

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V+SWT+MI+ F  +     A+  F++MK + + PN  T+  +L A      V    E+ A
Sbjct: 366 VVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALP----VISPSEVHA 421

Query: 476 SMTNEYNIPPKYEHYG----CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
            +     +   YE        ++D + +   + EA ++   +    ++V W +++A    
Sbjct: 422 QV-----VKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGID-NKDIVAWSAMLAGYAQ 475

Query: 532 HGEIELA 538
            GE E A
Sbjct: 476 AGETEAA 482



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 151/325 (46%), Gaps = 20/325 (6%)

Query: 30  QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFI 89
           + HAQ++K   +++ ++S +   LL ++         +  A  +FS I        +  +
Sbjct: 418 EVHAQVVK---TNYERSSTVGTALLDAY----VKLGKVDEAAKVFSGIDNKDIVAWSAML 470

Query: 90  RAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL-EGMQVHGLGTKLGF 148
              + +   + A+K+F ++   G+  + F+F  IL   A     + +G Q HG   K   
Sbjct: 471 AGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRL 530

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
            S   V + L+ MY   G I  A  +F +   +D+V W+ MI GY Q+G   + L++F+E
Sbjct: 531 DSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKE 590

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII-DNNVALDAHLQSTLITMYANCG 267
           MK   V+ D +    + +AC+ AG +  GE   + ++ D  +A      S ++ +Y+  G
Sbjct: 591 MKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAG 650

Query: 268 CMDMAKGLFDKVLLKNLVVST---AMVSGYSRAGQVEDARLIFDQ---MVEKDLICWSAM 321
            ++ A  + D   + NL  ST    +++      + E  RL  ++   M+ +D   +  +
Sbjct: 651 QLEKAMKVIDN--MPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLL 708

Query: 322 ISGYAENNHPQE---ALKLFNEMQV 343
            + YAE+   QE     KL NE  V
Sbjct: 709 SNMYAESGDWQERAKVRKLMNERNV 733


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/616 (39%), Positives = 356/616 (57%), Gaps = 40/616 (6%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           ML   +   + SF  IL++ A +     G   H    K+GF  D  +QTGL+  Y   G 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
           +  A+ +F  M  RD+V  + M                                   +SA
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAM-----------------------------------ISA 85

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
            S+ G +   EA + F  DN    ++   +++IT Y   G ++ A+ +FD   +K++V  
Sbjct: 86  LSKHGYVE--EARNLF--DNMTERNSCSWNSMITCYCKLGDINSARLMFDCNPVKDVVSW 141

Query: 288 TAMVSGYSRAGQVEDARLIFDQM-VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346
            A++ GY ++ Q+  A+ +F  M   ++ + W+ MIS Y +      A+ +F +MQ   +
Sbjct: 142 NAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENV 201

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE 406
           KP +VTM+S++SACAHLG LD  + IH YI       D+ + NA+IDMY KCG+LE+A +
Sbjct: 202 KPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAID 261

Query: 407 VFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL 466
           VF  + R+N+  W S+I    ++G    A+  F  M+ E I P+GVTF+G+L  CSH+GL
Sbjct: 262 VFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGL 321

Query: 467 VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLM 526
           +  G+  F+ M   Y + P  EHYGCMVDL GRA  L+EALEL+  MP  PN ++ GSL+
Sbjct: 322 LSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLL 381

Query: 527 AACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILK 586
            AC++H + +L E   +QLL+LDP   G  V LSN+YA   RW DV   RK M +RG+ K
Sbjct: 382 RACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHK 441

Query: 587 ERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEE 646
              CS IE+NN V+EF+  D SH Q  QI   L+E+  ELK  G+VP+  + L D+E+EE
Sbjct: 442 TPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEE 501

Query: 647 KREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRT 706
           K   I +HSE++A+ +GL+S+     IR+VKNLR C DCH+ +KL+S  + REI++RDR 
Sbjct: 502 KEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRK 561

Query: 707 RFHHYKDGVCSCKDYW 722
           RFHH+++G CSC DYW
Sbjct: 562 RFHHFRNGSCSCNDYW 577



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 65/138 (47%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A+ +F +M +E +     +   +L A A    L  G  +HG         D  +   L+ 
Sbjct: 189 AISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALID 248

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG +  A  +F  +S ++I  W+ +I G   NG  +E +  F  M+   ++PD + 
Sbjct: 249 MYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVT 308

Query: 221 LSKILSACSRAGNLSYGE 238
              ILS CS +G LS G+
Sbjct: 309 FVGILSGCSHSGLLSAGQ 326


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/684 (36%), Positives = 377/684 (55%), Gaps = 68/684 (9%)

Query: 86  NKFIRAISWSHRPKHALKVFLKM---LNEGLTIDR---FSFPPILKAIARAEGLLEGMQV 139
           N  + A   S     AL +F KM   ++E  T +R    S   IL A    + + +  +V
Sbjct: 228 NSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEV 287

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
           HG   + G   D FV   L+  Y  CG + +A  +F+ M ++D+V W+ M+ GY Q+G F
Sbjct: 288 HGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNF 347

Query: 200 D-----------------------------------EVLNLFEEMKMSNVEPDEMVLSKI 224
           +                                   E LNLF +M  S   P+ + +  +
Sbjct: 348 EAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISV 407

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           LSAC+  G  S G  +H +           L++ L+T+  + G  D           ++L
Sbjct: 408 LSACASLGAFSQGTEIHAY----------SLKNCLLTLDNDFGGED-----------EDL 446

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQ--MVEKDLICWSAMISGYAENNHPQEALKLFNEM- 341
           +V  A++  YS+    + AR IFD   + E++++ W+ MI G+A+     +ALKLF EM 
Sbjct: 447 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 506

Query: 342 -QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF--GGDLRVNNAIIDMYAKC 398
            +  G+ P+  T+  ++ ACAHL  +   ++IH Y+ ++         V N +IDMY+KC
Sbjct: 507 SEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKC 566

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G +++AR VF+ M +++ ISWTSM+  + +HG    AL  F+KM+     P+ +TF+ VL
Sbjct: 567 GDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 626

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
           YACSH G+VD+G   F SM+ +Y + P+ EHY C +DL  R+  L +A   V+ MP  P 
Sbjct: 627 YACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPT 686

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
            V+W +L++ACRVH  +ELAE A  +L++++ ++DG+  L+SNIYA   RW+DV  +R  
Sbjct: 687 AVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHL 746

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           MK+ GI K   CS ++       F   DRSH  + QIY  L  +I  +K  GYVP+ + A
Sbjct: 747 MKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFA 806

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           L D+++EEK  +++ HSEKLAL YGL+++     IRI KNLRVC DCH+    +SK+   
Sbjct: 807 LHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDH 866

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EIV+RD +RFHH+K+G CSC  YW
Sbjct: 867 EIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  255 bits (651), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 173/561 (30%), Positives = 271/561 (48%), Gaps = 44/561 (7%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY------- 68
           ++ +  C S   + Q H QI+           L + L     S P  +P SL        
Sbjct: 41  ASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALP-SEPFISPRSLGTGVVASY 99

Query: 69  -------YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
                  YAL +  ++   P+   N  IR      R   A+ V  +ML  G   D F+ P
Sbjct: 100 LACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLP 159

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
            +LKA         G   HGL    GF S+ F+   LV MY  CG + +A ++FD+++ R
Sbjct: 160 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 219

Query: 182 ---DIVPWSVMIDGYFQNGLFDEVLNLFEEM------KMSNVEPDEMVLSKILSACSRAG 232
              D++ W+ ++  + ++      L+LF +M      K +N   D + +  IL AC    
Sbjct: 220 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 279

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
            +   + VH   I N    D  + + LI  YA CG M+ A  +F+ +  K++V   AMV+
Sbjct: 280 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 339

Query: 293 GYSRAGQVEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
           GYS++G  E A  +F  M    +  D++ W+A+I+GY++     EAL LF +M   G  P
Sbjct: 340 GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLP 399

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNA-------FGG---DLRVNNAIIDMYAKC 398
           + VT++SV+SACA LG   Q   IH Y  KN        FGG   DL V NA+IDMY+KC
Sbjct: 400 NCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKC 459

Query: 399 GSLESAREVFER--MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDE--SIDPNGVTF 454
            S ++AR +F+   +  RNV++WT MI   A +GD+ +AL  F +M  E   + PN  T 
Sbjct: 460 RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTI 519

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNI-PPKYEHYGCMVDLFGRANLLREALELVETM 513
             +L AC+H   +  G++I A +   +      Y    C++D++ +   +  A  + ++M
Sbjct: 520 SCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSM 579

Query: 514 PFAPNVVIWGSLMAACRVHGE 534
               + + W S+M    +HG 
Sbjct: 580 S-QKSAISWTSMMTGYGMHGR 599



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 123/262 (46%), Gaps = 11/262 (4%)

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
           + T +V+ Y   G  + A L+ +++     + W+ +I  + +      A+ +   M   G
Sbjct: 91  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 150

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
            +PD  T+  V+ AC  L         H  I  N F  ++ + NA++ MY++CGSLE A 
Sbjct: 151 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 210

Query: 406 EVFERMRRR---NVISWTSMINAFAIHGDARNALIFFNKM------KDESIDPNGVTFIG 456
            +F+ + +R   +VISW S+++A     +A  AL  F+KM      K  +   + ++ + 
Sbjct: 211 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 270

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           +L AC     V + +E+  +       P  +     ++D + +  L+  A+++   M F 
Sbjct: 271 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVG-NALIDAYAKCGLMENAVKVFNMMEF- 328

Query: 517 PNVVIWGSLMAACRVHGEIELA 538
            +VV W +++A     G  E A
Sbjct: 329 KDVVSWNAMVAGYSQSGNFEAA 350


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/600 (37%), Positives = 355/600 (59%), Gaps = 31/600 (5%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           ILK  A+ + LL+G   H     +G  +D      L+ MY  CG +  AR +FD+M  R 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +V W+ MI    QNG  +E L+L  +M+       E  +S +L AC+    LS  + +H 
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           F I                       MD+           N+ V+TA++  Y++ G ++D
Sbjct: 190 FAIK--------------------AAMDL-----------NVFVATALLDVYAKCGLMKD 218

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           A  +F+ M ++ ++ WS+M +GY +N   ++AL LF +    G+K D+  M SVI ACA 
Sbjct: 219 AVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAG 278

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           L  + + ++++  + K+ F  ++ V +++IDMYAKCG +E + +VF  + +RNV+ W +M
Sbjct: 279 LAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAM 338

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I+  + H  +   +I F KM+   + PN VTF+ VL AC H GLV +G++ F  MT E++
Sbjct: 339 ISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHH 398

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           + P   HY CMVD   RA  + EA +L+  +PF  +  +WGSL+A+CR HG +ELAE AA
Sbjct: 399 LAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAA 458

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           K+L  ++P + G  +LLSN+YA + +W +V ++RK +KE  + KER  S IE+ ++V+ F
Sbjct: 459 KKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLF 518

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
           +  +R+H +  +IY KLNEV+ EL+  GY  +    L  + +  K+E++  HSEKLA   
Sbjct: 519 MVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTM 578

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           GL+    ++ IRI+KNLR+C DCH+F+KL SK + R++++RD  RFHH+K+G CSC D+W
Sbjct: 579 GLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 199/430 (46%), Gaps = 46/430 (10%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT--TTPSSLYYALSIFSQIPAPPS 82
           L   K  HAQIL +          L   LLTS  L    +   S+ +A  +F ++P+   
Sbjct: 80  LLQGKACHAQILLMG---------LKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSL 130

Query: 83  RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGL 142
              N  I +++ +     AL + L+M  EG     F+   +L A A    L E   +H  
Sbjct: 131 VSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAF 190

Query: 143 GTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202
             K     + FV T L+ +Y  CG + DA  +F+ M  R +V WS M  GY QN ++++ 
Sbjct: 191 AIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQA 250

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           L LF +   + ++ D+ ++S ++ AC+    +  G+ ++  +  +    +  + S+LI M
Sbjct: 251 LALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDM 310

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           YA CG ++ +  +F  V  +N+V+  AM+SG SR  +                       
Sbjct: 311 YAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHAR----------------------- 347

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAF 381
                     E + LF +MQ  G+ P+ VT +SV+SAC H+G++ + Q+   L   ++  
Sbjct: 348 --------SLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHL 399

Query: 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIHGDARNALIFFN 440
             ++   + ++D  ++ G +  A ++  ++      S W S++ +   HG+   A +   
Sbjct: 400 APNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAK 459

Query: 441 KMKDESIDPN 450
           K+ D  I+P+
Sbjct: 460 KLFD--IEPH 467



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 150/331 (45%), Gaps = 35/331 (10%)

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
           +IL  C++   L  G+A H  I+   +  D    + LI MY+ CG +D A+ +FD     
Sbjct: 69  EILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFD----- 123

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
                                     +M  + L+ W+ MI    +N    EAL L  +MQ
Sbjct: 124 --------------------------EMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQ 157

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
             G    + T+ SV+ ACA    L + Q +H +  K A   ++ V  A++D+YAKCG ++
Sbjct: 158 REGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMK 217

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            A  VFE M  R+V++W+SM   +  +     AL  F K  +  +  +      V+ AC+
Sbjct: 218 DAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACA 277

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
               + EG+++ A + ++            ++D++ +   + E+ ++   +    NVV+W
Sbjct: 278 GLAAMIEGKQMNA-LLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE-KRNVVLW 335

Query: 523 GSLMAACRVHGE-IE-LAEFAAKQLLQLDPD 551
            ++++    H   +E +  F   Q + L P+
Sbjct: 336 NAMISGLSRHARSLEVMILFEKMQQMGLSPN 366


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/684 (34%), Positives = 377/684 (55%), Gaps = 64/684 (9%)

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI--DRFSFPPILKAIAR 129
           S+F+ +    +   N  I   S       A++++  +L  G ++   R +   ++ A + 
Sbjct: 93  SLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASA 152

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM----------- 178
                 G Q H    +LGFG + FV + LVGMY   G I DA+ +FD+M           
Sbjct: 153 LGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTM 212

Query: 179 --------------------SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
                               + RD + W+ M+ G+ QNGL  + LN F  M+   +  D+
Sbjct: 213 ITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQ 272

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
                IL+AC     L  G+ +H +II  +                           +D 
Sbjct: 273 YTFGSILTACGALSALEQGKQIHAYIIRTH---------------------------YDD 305

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
               N+ V +A+V  YS+   ++ A   F +M  K++I W+A+I GY +N   +EA+++F
Sbjct: 306 ----NVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVF 361

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           +EMQ  G+ PD  T+ SVIS+CA+L  L++  + H     +     + V+NA++ +Y KC
Sbjct: 362 SEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKC 421

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           GS+E A  +F+ M   + +SWT+++  +A  G A+  +  F KM  + + P+GVTFIGVL
Sbjct: 422 GSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVL 481

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            ACS AG V++G   F SM  ++ I P  +HY CM+DL+ R+  L+EA E ++ MP  P+
Sbjct: 482 SACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPD 541

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
            + WG+L++ACR+ G++E+ ++AA+ LL++DP +  + VLL +++A    W  V +LR+ 
Sbjct: 542 AIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRG 601

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           M++R + KE  CS I+  N+V+ F   D+SH  +  IYEKL  + S++   GY PD+ S 
Sbjct: 602 MRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSV 661

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           L D+ D +K  ++  HSEKLA+ +GL+    +  IRIVKNLRVC DCHN  KL+SK+  R
Sbjct: 662 LHDVADTDKVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITGR 721

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           +I++RD  RFH + +GVCSC D+W
Sbjct: 722 DILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 213/434 (49%), Gaps = 43/434 (9%)

Query: 158 LVGMYGACGKILDARLMFD-------------------------------KMSYRDIVPW 186
           L+  YG  G+   AR +FD                                M+ RD V +
Sbjct: 47  LLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSY 106

Query: 187 SVMIDGYFQNGLFDEVLNLFEEM--KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
           + +I G+   G     + L+  +    S+V P  + +S ++ A S  G+ + G   H  I
Sbjct: 107 NAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQI 166

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           +     ++A + S L+ MYA  G +  AK +FD++  KN+V+   M++G  R   VE+AR
Sbjct: 167 LRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEAR 226

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            +F+ M ++D I W+ M++G+ +N    +AL  F  M+  G+  D+ T  S+++AC  L 
Sbjct: 227 RLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALS 286

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L+Q ++IH YI +  +  ++ V +A++DMY+KC S++ A   F RM  +N+ISWT++I 
Sbjct: 287 ALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIV 346

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
            +  +G +  A+  F++M+ + IDP+  T   V+ +C++   ++EG +          + 
Sbjct: 347 GYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHC-----LALV 401

Query: 485 PKYEHY----GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
               HY      +V L+G+   + +A  L + M F   V  W +L+      G  +    
Sbjct: 402 SGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVS-WTALVTGYAQFGRAKETID 460

Query: 541 AAKQLLQLDPDHDG 554
             +++L  D   DG
Sbjct: 461 LFEKMLAKDVKPDG 474



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 155/337 (45%), Gaps = 45/337 (13%)

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
           HL + L+T Y   G    A+ +FD     NL    A++S  + A  ++D   +F  M ++
Sbjct: 42  HLLNHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQR 101

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCG--MKPDKVTMLSVISACAHLGVLDQAQR 371
           D + ++A+I+G++       A++L++ +   G  ++P ++TM +++ A + LG     ++
Sbjct: 102 DTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQ 161

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAK-------------------------------CGS 400
            H  I +  FG +  V + ++ MYAK                               C  
Sbjct: 162 FHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKM 221

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E AR +FE M  R+ I+WT+M+  F  +G    AL FF +M+ + I  +  TF  +L A
Sbjct: 222 VEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTA 281

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHY----GCMVDLFGRANLLREALELVETMPFA 516
           C     +++G++I A     Y I   Y+        +VD++ +   ++ A      M   
Sbjct: 282 CGALSALEQGKQIHA-----YIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMS-C 335

Query: 517 PNVVIWGSLMAACRVHG--EIELAEFAAKQLLQLDPD 551
            N++ W +L+     +G  E  +  F+  Q   +DPD
Sbjct: 336 KNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/684 (36%), Positives = 377/684 (55%), Gaps = 68/684 (9%)

Query: 86  NKFIRAISWSHRPKHALKVFLKM---LNEGLTIDR---FSFPPILKAIARAEGLLEGMQV 139
           N  + A   S     AL +F KM   ++E  T +R    S   IL A    + + +  +V
Sbjct: 235 NSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEV 294

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
           HG   + G   D FV   L+  Y  CG + +A  +F+ M ++D+V W+ M+ GY Q+G F
Sbjct: 295 HGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNF 354

Query: 200 D-----------------------------------EVLNLFEEMKMSNVEPDEMVLSKI 224
           +                                   E LNLF +M  S   P+ + +  +
Sbjct: 355 EAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISV 414

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           LSAC+  G  S G  +H +           L++ L+T+  + G  D           ++L
Sbjct: 415 LSACASLGAFSQGTEIHAY----------SLKNCLLTLDNDFGGED-----------EDL 453

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQ--MVEKDLICWSAMISGYAENNHPQEALKLFNEM- 341
           +V  A++  YS+    + AR IFD   + E++++ W+ MI G+A+     +ALKLF EM 
Sbjct: 454 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 513

Query: 342 -QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF--GGDLRVNNAIIDMYAKC 398
            +  G+ P+  T+  ++ ACAHL  +   ++IH Y+ ++         V N +IDMY+KC
Sbjct: 514 SEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKC 573

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G +++AR VF+ M +++ ISWTSM+  + +HG    AL  F+KM+     P+ +TF+ VL
Sbjct: 574 GDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 633

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
           YACSH G+VD+G   F SM+ +Y + P+ EHY C +DL  R+  L +A   V+ MP  P 
Sbjct: 634 YACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPT 693

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
            V+W +L++ACRVH  +ELAE A  +L++++ ++DG+  L+SNIYA   RW+DV  +R  
Sbjct: 694 AVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHL 753

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           MK+ GI K   CS ++       F   DRSH  + QIY  L  +I  +K  GYVP+ + A
Sbjct: 754 MKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFA 813

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           L D+++EEK  +++ HSEKLAL YGL+++     IRI KNLRVC DCH+    +SK+   
Sbjct: 814 LHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDH 873

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EIV+RD +RFHH+K+G CSC  YW
Sbjct: 874 EIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  254 bits (650), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 173/561 (30%), Positives = 271/561 (48%), Gaps = 44/561 (7%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY------- 68
           ++ +  C S   + Q H QI+           L + L     S P  +P SL        
Sbjct: 48  ASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALP-SEPFISPRSLGTGVVASY 106

Query: 69  -------YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
                  YAL +  ++   P+   N  IR      R   A+ V  +ML  G   D F+ P
Sbjct: 107 LACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLP 166

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
            +LKA         G   HGL    GF S+ F+   LV MY  CG + +A ++FD+++ R
Sbjct: 167 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 226

Query: 182 ---DIVPWSVMIDGYFQNGLFDEVLNLFEEM------KMSNVEPDEMVLSKILSACSRAG 232
              D++ W+ ++  + ++      L+LF +M      K +N   D + +  IL AC    
Sbjct: 227 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 286

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
            +   + VH   I N    D  + + LI  YA CG M+ A  +F+ +  K++V   AMV+
Sbjct: 287 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 346

Query: 293 GYSRAGQVEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
           GYS++G  E A  +F  M    +  D++ W+A+I+GY++     EAL LF +M   G  P
Sbjct: 347 GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLP 406

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNA-------FGG---DLRVNNAIIDMYAKC 398
           + VT++SV+SACA LG   Q   IH Y  KN        FGG   DL V NA+IDMY+KC
Sbjct: 407 NCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKC 466

Query: 399 GSLESAREVFER--MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDE--SIDPNGVTF 454
            S ++AR +F+   +  RNV++WT MI   A +GD+ +AL  F +M  E   + PN  T 
Sbjct: 467 RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTI 526

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNI-PPKYEHYGCMVDLFGRANLLREALELVETM 513
             +L AC+H   +  G++I A +   +      Y    C++D++ +   +  A  + ++M
Sbjct: 527 SCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSM 586

Query: 514 PFAPNVVIWGSLMAACRVHGE 534
               + + W S+M    +HG 
Sbjct: 587 S-QKSAISWTSMMTGYGMHGR 606



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 123/262 (46%), Gaps = 11/262 (4%)

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
           + T +V+ Y   G  + A L+ +++     + W+ +I  + +      A+ +   M   G
Sbjct: 98  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 157

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
            +PD  T+  V+ AC  L         H  I  N F  ++ + NA++ MY++CGSLE A 
Sbjct: 158 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 217

Query: 406 EVFERMRRR---NVISWTSMINAFAIHGDARNALIFFNKM------KDESIDPNGVTFIG 456
            +F+ + +R   +VISW S+++A     +A  AL  F+KM      K  +   + ++ + 
Sbjct: 218 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 277

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           +L AC     V + +E+  +       P  +     ++D + +  L+  A+++   M F 
Sbjct: 278 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVG-NALIDAYAKCGLMENAVKVFNMMEFK 336

Query: 517 PNVVIWGSLMAACRVHGEIELA 538
            +VV W +++A     G  E A
Sbjct: 337 -DVVSWNAMVAGYSQSGNFEAA 357


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/710 (34%), Positives = 385/710 (54%), Gaps = 47/710 (6%)

Query: 55  TSFSLPTTTPSSLYYALSIFSQIPAPPSR----VSNKFIRAISWSHRPKHALKVFLKMLN 110
           TS          L  A + F  +P  P+R    + N  + A + +     A+ VF  +L 
Sbjct: 96  TSLVAAQAAAGRLRDAAAFFDAVP--PARRDTVLHNAMMSAFARASLAAPAVSVFHALLG 153

Query: 111 EG-LTIDRFSFPPILKAIARAEGLLEG--MQVHGLGTKLGFGSDPFVQTGLVGMYGACG- 166
            G L  D +SF  ++ A+ +   L      Q+H    K G  +   V   L+ +Y  C  
Sbjct: 154 SGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDT 213

Query: 167 --------KILD-------------------------ARLMFDKMSYRDIVPWSVMIDGY 193
                   K+LD                         AR +F+++  +  V W+ MI GY
Sbjct: 214 PEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGY 273

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII--DNNVAL 251
            Q+G+  +   LF  M    V  DE   + +LSAC+ AG   +G++VH  II    N   
Sbjct: 274 VQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVP 333

Query: 252 DAHL--QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
           +A L   + L+T+Y+  G + +AK +FD + LK++V    ++SGY  +G ++ A  +F  
Sbjct: 334 EAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKV 393

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M  K+ + W  M+SGY      ++ALKLFN+M+   +KP   T    I+AC  LG L   
Sbjct: 394 MPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHG 453

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           +++H ++ +  F       NA++ MYAKCG++  AR VF  M   + +SW +MI+A   H
Sbjct: 454 RQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQH 513

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G  R AL  F++M  E IDP+ ++F+ +L AC+HAGLVDEG   F SM  ++ I P  +H
Sbjct: 514 GHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDH 573

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           Y  ++DL GR+  + EA +L++TMPF P   IW ++++ CR +G++E   +AA QL ++ 
Sbjct: 574 YARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMI 633

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P HDG  +LLSN Y+   RW D   +RK M++RG+ KE  CS IE+ ++++ FL  D  H
Sbjct: 634 PQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKH 693

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
            +  ++Y+ L  + + ++  GYVPD    L D+E  EK  ++  HSEKLA+ +GL+    
Sbjct: 694 PEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPP 753

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
            + + ++KNLR+C DCH  +  +SK   REIV+RD  RFHH+KDG CSC+
Sbjct: 754 GATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCE 803



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 212/454 (46%), Gaps = 47/454 (10%)

Query: 152 PFVQTGLVGMYGACGKILDARLMFDKM--SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
           P   T LV    A G++ DA   FD +  + RD V  + M+  + +  L    +++F  +
Sbjct: 92  PSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHAL 151

Query: 210 KMS-NVEPDEMVLSKILSACSRAGNLS--YGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
             S ++ PD+   + ++SA  +  NL+  +   +H  ++ +  A    + + LI +Y  C
Sbjct: 152 LGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKC 211

Query: 267 GCMDM---AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
              +    A+ + D++  K+ +  T MV GY R G V  AR +F+++  K  + W+AMIS
Sbjct: 212 DTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMIS 271

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH---LYIDKNA 380
           GY ++    +A +LF  M    +  D+ T  SV+SACA+ G     + +H   + +  N 
Sbjct: 272 GYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNF 331

Query: 381 FG-GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA------------ 427
                L VNNA++ +Y+K G +  A+ +F+ M  ++V+SW ++++ +             
Sbjct: 332 VPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVF 391

Query: 428 ------------------IHGD-ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
                             +HG  + +AL  FN+M+ E + P   T+ G + AC   G + 
Sbjct: 392 KVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALK 451

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
            GR++ A +  +            ++ ++ +   + +A  +   MP   + V W ++++A
Sbjct: 452 HGRQLHAHLV-QCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNL-DSVSWNAMISA 509

Query: 529 CRVHGEIELAEFAAKQLLQ--LDPDHDGALVLLS 560
              HG    A     Q++   +DPD    L +L+
Sbjct: 510 LGQHGHGREALELFDQMVAEGIDPDRISFLTILT 543



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 18/201 (8%)

Query: 5   SQPTKPLTLPTSTAISSCS---SLTHMKQTHAQILK--LSHSHHSQNSLLLKLLLTSFSL 59
           ++  KP     + AI++C    +L H +Q HA +++     S+ + N+LL          
Sbjct: 427 AEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMY------- 479

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
                 ++  A  +F  +P   S   N  I A+      + AL++F +M+ EG+  DR S
Sbjct: 480 --AKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRIS 537

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQ--TGLVGMYGACGKILDARLMFDK 177
           F  IL A   A  + EG   +    K  FG  P       L+ + G  G+I +AR +   
Sbjct: 538 FLTILTACNHAGLVDEGFH-YFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKT 596

Query: 178 MSYRDIVP-WSVMIDGYFQNG 197
           M +      W  ++ G   NG
Sbjct: 597 MPFEPTPSIWEAILSGCRTNG 617


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/635 (36%), Positives = 360/635 (56%), Gaps = 32/635 (5%)

Query: 89  IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148
           I  +S + +   A++ F  M   G    +F+F   ++A A    +  G Q+H L  K G 
Sbjct: 13  ISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGI 72

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
           GS+ FV + L  MY  CG + DA  +F++M  +D V W+ MIDGY + G F+E L  F++
Sbjct: 73  GSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKK 132

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M    V  D+ VL   L AC       +G +VH  ++      D                
Sbjct: 133 MIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESD---------------- 176

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE-KDLICWSAMISGYAE 327
                          + V  A+   YS+AG +E A  +F    E ++++ ++ +I GY E
Sbjct: 177 ---------------IFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVE 221

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
               ++ L +F E++  G++P++ T  S+I ACA+   L+Q  ++H  + K  F  D  V
Sbjct: 222 TEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFV 281

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
           ++ ++DMY KCG LE A + F+ +     I+W S+++ F  HG  ++A+  F +M D  +
Sbjct: 282 SSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGV 341

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            PN +TFI +L  CSHAGLV+EG + F SM   Y + P  EHY C++DL GRA  L+EA 
Sbjct: 342 KPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAK 401

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
           E +  MPF PN   W S + ACR+HG+ E+ + AA++L++L+P + GALVLLSNIYA ++
Sbjct: 402 EFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANER 461

Query: 568 RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627
           +W+DV  +R  M++  + K    S +++  + + F   D SH +   IYEKL+ ++ ++K
Sbjct: 462 QWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIK 521

Query: 628 PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHN 687
            AGYVP   S  +D++D  K +++  HSE++A+ + LIS      I + KNLRVC DCH+
Sbjct: 522 AAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHS 581

Query: 688 FIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            IK +SKV  R+I++RD +RFHH+ DG CSC DYW
Sbjct: 582 AIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 172/358 (48%), Gaps = 36/358 (10%)

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           M  R++V W+ MI G  QN  F E +  F  M++    P +   S  + AC+  G++  G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
           + +H   +   +  +  + S L  MY+ CG M  A  +F+++  K+ V  TAM+ GYS+ 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           G+ E+A L F +M+++++                                 D+  + S +
Sbjct: 121 GEFEEALLAFKKMIDEEVTI-------------------------------DQHVLCSTL 149

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE-RMRRRNV 416
            AC  L      + +H  + K  F  D+ V NA+ DMY+K G +ESA  VF      RNV
Sbjct: 150 GACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNV 209

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           +S+T +I+ +         L  F +++ + I+PN  TF  ++ AC++   +++G ++ A 
Sbjct: 210 VSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQ 269

Query: 477 -MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            M   ++  P       +VD++G+  LL +A++  + +   P  + W SL++    HG
Sbjct: 270 VMKINFDEDPFVSSI--LVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSLVSVFGQHG 324



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 142/291 (48%), Gaps = 35/291 (12%)

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M +++L+ W+AMISG ++N+   EA++ F  M++CG  P +    S I ACA LG ++  
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           +++H    K   G +L V + + DMY+KCG++  A +VFE M  ++ +SWT+MI+ ++  
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACS-----------HAGLVDEGRE--IFA- 475
           G+   AL+ F KM DE +  +       L AC            H+ +V  G E  IF  
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 476 --------------SMTNEYNIPPKYEH---YGCMVDLFGRANLLREALEL---VETMPF 515
                         S +N + I  +  +   Y C++D +     + + L +   +     
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL-VLLSNIYAK 565
            PN   + SL+ AC     +E       Q+++++ D D  +  +L ++Y K
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGK 291



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 75/179 (41%), Gaps = 11/179 (6%)

Query: 6   QPTKPLTLPTSTAISSCS---SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT 62
           Q  +P     S+ I +C+   +L    Q HAQ++K++       S +L  +     L   
Sbjct: 238 QGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGL--- 294

Query: 63  TPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
               L  A+  F +I  P     N  +         K A+K+F +M++ G+  +  +F  
Sbjct: 295 ----LEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFIS 350

Query: 123 ILKAIARAEGLLEGMQ-VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
           +L   + A  + EG+   + +    G        + ++ + G  G++ +A+   ++M +
Sbjct: 351 LLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPF 409


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/652 (35%), Positives = 374/652 (57%), Gaps = 34/652 (5%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           I     + P+ V   F R IS         +  L+M+  G  I    +  +L A      
Sbjct: 8   IHRSFSSSPNSVLQTF-RPISQLCSNGRLQEALLEMVMLGPEIGFHCYDALLNACLDKRA 66

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L EG +VH    K  +    +++T L+  YG C  + DAR + D+M  +++V W+ MI  
Sbjct: 67  LREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISR 126

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y Q G   E L++F EM  S+ +P+E   + +L++C RA  L+ G+ +H  I+  N   D
Sbjct: 127 YSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNY--D 184

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
           +H+                              V ++++  Y++AGQ+E+AR IF+ + E
Sbjct: 185 SHI-----------------------------FVGSSLLDMYAKAGQIEEAREIFECLPE 215

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           +D++  +A+I+GYA+    +EAL++F  +Q  GM+P+ VT  S+++A + L +LD  ++ 
Sbjct: 216 RDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQA 275

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H ++ +        + N++IDMY+KCG+L  A+ +F+ M  R  ISW +M+  ++ HG  
Sbjct: 276 HCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLG 335

Query: 433 RNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFASMT-NEYNIPPKYEHY 490
           R  L  F  M+DE  + P+ VT + VL  CSH  + D G  I+  M   EY I P  EHY
Sbjct: 336 REVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHY 395

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
           GC+VD+ GRA  + EA E ++ MP  P   + GSL+ ACRVH  +++ E+   +L++++P
Sbjct: 396 GCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEP 455

Query: 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK 610
           ++ G  V+LSN+YA   RW+DV  +R  M ++ + KE   S I+    ++ F   DR+H 
Sbjct: 456 ENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHP 515

Query: 611 QTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD 670
           + +++  K+ E+  ++K AGYVPDI   L D+++E+K +++L HSEKLAL +GLI++ + 
Sbjct: 516 RREEVLAKMKEISIKMKQAGYVPDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEG 575

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             IR+ KNLR+C DCHNF K+ SKV+ RE+ +RD+ RFH    G+CSC DYW
Sbjct: 576 IPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 203/434 (46%), Positives = 293/434 (67%), Gaps = 1/434 (0%)

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
           +++ Y+RAG++ DAR +FD+M  ++ + WSAM++GY +    +EAL++F  MQ   ++PD
Sbjct: 149 LITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPD 208

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
              ++ V++ACA  G L+Q + +H Y+  +    +L    A++DMY+KCG ++ A +VFE
Sbjct: 209 DTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFE 268

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
           RM+ +NV++WT+MI   A+HG    A++ F +M+   I P+ + FIGVL AC+HAGLVD+
Sbjct: 269 RMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDK 328

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           GRE+F SM  +Y I PK EHYGCMVDL  R   L EA E+++ MP  P+ +IWG+LMA C
Sbjct: 329 GRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGC 388

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
           R H  +E AE+ AK  + L+PD  GA VLLSNIYA   R     E+R  M+E+G+ K   
Sbjct: 389 RFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPG 448

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK-PAGYVPDIHSALVDLEDEEKR 648
           CS +E+N  +++F+  D SH +   I  K  E+ + ++   GY+PD+   L+D+E+EEK 
Sbjct: 449 CSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRIRLEEGYIPDMKEVLLDIEEEEKE 508

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
             +  HSEKLA+ + LIS   +  IRI KNLRVC DCH+  KL+SKVY REIV+RDRTRF
Sbjct: 509 GALSRHSEKLAIAFALISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVVRDRTRF 568

Query: 709 HHYKDGVCSCKDYW 722
           H +K+G CSCKDYW
Sbjct: 569 HLFKEGTCSCKDYW 582



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 181/400 (45%), Gaps = 74/400 (18%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           AL    Q+P     + +  IRA+S S RP  AL ++  +L  GL     + P +LK++A 
Sbjct: 26  ALLTSGQLPRS-VELHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMAL 84

Query: 130 AEGL----LEGMQVHGLGTKLGFGSDPFV---------QTGLVG---------------- 160
           +  +    +  + VH    KLG   D FV           G +G                
Sbjct: 85  SPAVPGAAVLALTVHTHAVKLGL--DRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVD 142

Query: 161 ---------MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
                     Y   G++ DAR +FD+M  R+ V WS M++GY Q G   E L +F  M+ 
Sbjct: 143 ASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQA 202

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
            +V PD+ VL  +L+AC++ G L  G+ VH ++  + + ++    + L+ MY+ CG + +
Sbjct: 203 EDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQL 262

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
           A  +F+++  KN++  T M+ G +  G+                                
Sbjct: 263 AMDVFERMQYKNVLAWTTMIKGLAMHGR-------------------------------G 291

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH-LYIDKNAFGGDLRVNNA 390
            EA+ LF +M+  G++PD +  + V+ AC H G++D+ + +    + K      +     
Sbjct: 292 SEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGC 351

Query: 391 IIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIH 429
           ++D+ A+ G L  A+E+ ++M    + + W +++     H
Sbjct: 352 MVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFH 391



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 47/289 (16%)

Query: 291 VSGY----SRAGQVE-----DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           V+GY    SR G+        A L+    + + +    A+I   + +  P  AL L+  +
Sbjct: 4   VAGYVDLLSRCGEARAIVRIQAALLTSGQLPRSVELHDALIRALSRSARPHLALPLYAHL 63

Query: 342 QVCGMKPDKVTMLSVISACA--------------------HLG------VLDQAQRIH-- 373
              G+ P   T+ S++ + A                     LG      V +   R+H  
Sbjct: 64  LRAGLLPTPHTLPSLLKSMALSPAVPGAAVLALTVHTHAVKLGLDRFVLVSNALIRVHAG 123

Query: 374 --------LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
                   L + + A   D    N +I  YA+ G L  AR +F+ M  RN +SW++M+N 
Sbjct: 124 FLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNG 183

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
           +   GD R AL  F +M+ E + P+    +GVL AC+  G +++G+ +   +   + I  
Sbjct: 184 YVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYL-KAHGIKI 242

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
                  +VD++ +   ++ A+++ E M +  NV+ W +++    +HG 
Sbjct: 243 NLFFGTALVDMYSKCGEVQLAMDVFERMQY-KNVLAWTTMIKGLAMHGR 290



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 150/349 (42%), Gaps = 62/349 (17%)

Query: 7   PTKPLTLPT-------STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLL---------- 49
           PT P TLP+       S A+   + L     THA  L L       N+L+          
Sbjct: 70  PT-PHTLPSLLKSMALSPAVPGAAVLALTVHTHAVKLGLDRFVLVSNALIRVHAGFLGSL 128

Query: 50  ---LKLLLTSFSLPTTTPSSLYYALS----------IFSQIPAPPSRVSNKFIRAISWSH 96
              L LL T+ ++  +T ++L  A +          +F ++PA  +   +  +     + 
Sbjct: 129 ADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAG 188

Query: 97  RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQT 156
             + AL++F +M  E +  D      +L A A+   L +G  VHG     G   + F  T
Sbjct: 189 DGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGT 248

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
            LV MY  CG++  A  +F++M Y++++ W+ MI G   +G   E + LF +M+ S + P
Sbjct: 249 ALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRP 308

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           D++    +L AC+ AG +  G  + + ++          +  +     + GC        
Sbjct: 309 DDIAFIGVLCACTHAGLVDKGRELFDSMVR---------KYGIKPKIEHYGC-------- 351

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM-VEKDLICWSAMISG 324
                        MV   +R G + +A+ +  +M +E D + W A+++G
Sbjct: 352 -------------MVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAG 387


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/591 (40%), Positives = 349/591 (59%), Gaps = 45/591 (7%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYG--ACGKILD---ARLMFDKMSYRDIVPWSVMIDG 192
           Q H L  + G   D ++   LV  Y   +  + L    +  +FD +   ++  W+ MI  
Sbjct: 73  QAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKV 132

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
             +N    + + L+ EM +++  P++     +L ACS AG ++ G  VH  ++ + +  D
Sbjct: 133 CIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGD 192

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
            H+ S+ I MYA+ G +                              VE  R++ D+  E
Sbjct: 193 GHILSSAIRMYASFGRL------------------------------VEARRILDDKGGE 222

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
            D +C       +       EAL++F++MQ   ++P K  + SV+SACA+LG LDQ + I
Sbjct: 223 VDAVCMPDRKGCF------MEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWI 276

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H Y  +N+   D  +  +++DMYAKCG ++ A EVFE+M  + V SW +MI   A+HG A
Sbjct: 277 HTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRA 336

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
            +A+  F+KM    I+PN +TF+GVL AC+H GLV +G  IF SM  EY + P+ EHYGC
Sbjct: 337 EDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGC 393

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           +VDL GRA LL EA ++V ++P  P   +WG+L+ ACR HG +EL E   K LL+L+P +
Sbjct: 394 IVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQN 453

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMN-NEVYEFLTADRSHKQ 611
            G   LLSNIYAK  RW++VGE+RK MKERGI      S I++   EV++F+  D SH Q
Sbjct: 454 SGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQ 513

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS 671
              IY+ L++V   L+  GY PD    L D+++EEK   +  HSEKLA+ +GLI++   +
Sbjct: 514 VKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGT 573

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            IRIVKNLRVCEDCH+  KL+S+VY REI++RDR R+HH+++G CSCKD+W
Sbjct: 574 TIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 624



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 206/414 (49%), Gaps = 49/414 (11%)

Query: 23  SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFS-LPTTTPSSLYYALSIFSQIPAPP 81
           +SL H+KQ HA IL+   + H Q+S +   L+ S++ + T    S   +L +F  +  P 
Sbjct: 66  TSLHHLKQAHALILR---TGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPN 122

Query: 82  SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG 141
             + N  I+    ++ P  A+ ++ +M+      +++++P +LKA + A  + EG+QVH 
Sbjct: 123 VFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHA 182

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACGKILDAR-LMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
              K G G D  + +  + MY + G++++AR ++ DK    D V    M D   + G F 
Sbjct: 183 HLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAV---CMPD---RKGCFM 236

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
           E L +F +M+   + P + VL  +LSAC+  G L  G  +H +   N++ LD  L ++L+
Sbjct: 237 EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLV 296

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
            MYA CG +D+A  +F+K+  K +    AM+ G +  G+ ED                  
Sbjct: 297 DMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAED------------------ 338

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
                        A+ LF++M +    P+++T + V++ACAH G++ +   I   + K  
Sbjct: 339 -------------AIDLFSKMDI---NPNEITFVGVLNACAHGGLVQKGLTIFNSMRKE- 381

Query: 381 FGGDLRVNN--AIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIHGD 431
           +G + ++ +   I+D+  + G L  A +V   +      + W +++ A   HG+
Sbjct: 382 YGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGN 435


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 264/725 (36%), Positives = 397/725 (54%), Gaps = 61/725 (8%)

Query: 43  HSQNSLLLKLLLTSFSLPTTTPSS-----------LYYALSIFSQIPAPPSRVS--NKFI 89
           HS  ++L + ++    L  TT SS           L +A  +F + P P   VS  N  +
Sbjct: 3   HSGRAILRRCMMLQVRLQCTTSSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMV 62

Query: 90  RAISWSHRPKHALKVFLKM--------------------LNEGLTI-----DR--FSFPP 122
            A   + +P+ AL +F KM                    L+E   +     DR   S+  
Sbjct: 63  AAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTS 122

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQ----TGLVGMYGACGKILDARLMFDKM 178
           +++   R   + E  ++        F   P       T ++G     G++ DAR +FD M
Sbjct: 123 MVRGYVRNGDVAEAERL--------FWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMM 174

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
             +D+V  + MI GY + G  DE   LF+EM   NV    +  + ++S  +R G +    
Sbjct: 175 PEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNV----VTWTAMVSGYARNGKVDVAR 230

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
            + E + + N        + ++  Y + G M  A  LFD + +K +VV   M+ G+   G
Sbjct: 231 KLFEVMPERNEVS----WTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNG 286

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
           +V+ AR +F  M E+D   WSAMI  Y    +  EAL LF  MQ  G+  +  +++SV+S
Sbjct: 287 EVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLS 346

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
            C  L  LD  +++H  + ++ F  DL V + +I MY KCG+L  A++VF R   ++V+ 
Sbjct: 347 VCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVM 406

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           W SMI  ++ HG    AL  F+ M    + P+ VTFIGVL ACS++G V EG E+F +M 
Sbjct: 407 WNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMK 466

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
            +Y + P  EHY C+VDL GRA+ + EA++LVE MP  P+ ++WG+L+ ACR H +++LA
Sbjct: 467 CKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLA 526

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
           E A ++L QL+P + G  VLLSN+YA   RW+DV  LR+ +K R + K   CS IE+  +
Sbjct: 527 EVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKK 586

Query: 599 VYEFLTAD-RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEK 657
           V+ F   D + H +   I + L ++   L+ AGY PD    L D+++EEK   + +HSEK
Sbjct: 587 VHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEK 646

Query: 658 LALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCS 717
           LA+ YGL+   +   IR++KNLRVC DCH+ IKL++KV  REI++RD  RFHH+KDG CS
Sbjct: 647 LAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGHCS 706

Query: 718 CKDYW 722
           CKDYW
Sbjct: 707 CKDYW 711



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 40/233 (17%)

Query: 10  PLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYY 69
           P  +   +   S +SL H KQ HAQ+++   S   Q+  +  +L+T +        +L  
Sbjct: 339 PSLISVLSVCVSLASLDHGKQVHAQLVR---SEFDQDLYVASVLITMY----VKCGNLVR 391

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F++ P     + N  I   S     + AL VF  M + G+  D  +F  +L A + 
Sbjct: 392 AKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSY 451

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           +  + EG+++     K  +  +P ++      + AC        + D +   D V     
Sbjct: 452 SGKVKEGLELFET-MKCKYQVEPGIE------HYAC--------LVDLLGRADQV----- 491

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
                     +E + L E+M M   EPD +V   +L AC     L   E   E
Sbjct: 492 ----------NEAMKLVEKMPM---EPDAIVWGALLGACRTHMKLDLAEVAVE 531


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/532 (42%), Positives = 331/532 (62%), Gaps = 22/532 (4%)

Query: 213 NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
           ++ PD + L  +L AC+  G   +G+AVH   + +    D  + + L+ MYA CG +D A
Sbjct: 8   DMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEA 67

Query: 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM----VEKDLICWSAMISGYAEN 328
             +FD++  K++V   AMV+GYS+ G+ EDA  +F++M    +E +++ WSA+I+ +A+ 
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 329 NHPQEALKLFNEMQVCG-----------------MKPDKVTMLSVISACAHLGVLDQAQR 371
               E L +F EMQ                    +KP+  T+   + ACA L  L   ++
Sbjct: 128 GLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQ 187

Query: 372 IHLYIDKNAFGGD-LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
           IH YI +N F    L V N +IDMYAK G ++ AR VF+ ++++N +SWTS++  + +HG
Sbjct: 188 IHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHG 247

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
             + AL  F++M+   + P+GVT + VLYACSH+G++D+G E F SM+ E+ + P  EHY
Sbjct: 248 RGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHY 307

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
            CMVDL GRA  L EA+EL+E M   P+ ++W +L++ CR+H  +EL E AAKQLL+L+ 
Sbjct: 308 ACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNS 367

Query: 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK 610
           ++DG+  LLSNIYA  +RW+DV  +R  MK  GI K   CS ++       F  AD++H 
Sbjct: 368 ENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHP 427

Query: 611 QTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD 670
           Q+ QIYE L  +   +K  GYVP+   AL D++DEEK +++  HSEKLAL YG++ S   
Sbjct: 428 QSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAPG 487

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + IRI KNLRVC DCHN I  +S +   EI++RD +RFHH+K G CSC  YW
Sbjct: 488 APIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 164/372 (44%), Gaps = 88/372 (23%)

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           D  S   +L A A     L G  VHG+  + G   D FV   LV MY  CG + +A  +F
Sbjct: 12  DVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVF 71

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE-------------------- 215
           D++  +D+V W+ M++GY Q G F++ L LFE+M+  N+E                    
Sbjct: 72  DRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGC 131

Query: 216 --------------------------------PDEMVLSKILSACSRAGNLSYGEAVHEF 243
                                           P+   +S  L AC+R   L  G  +H +
Sbjct: 132 ETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAY 191

Query: 244 IIDNNV-ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           I+ N+  +   ++ + LI MYA  G +D+A+ +FD +  KN V  T++++GY   G+   
Sbjct: 192 ILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGR--- 248

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
                                        +EAL++F+EM+  G++PD VT+L V+ AC+H
Sbjct: 249 ----------------------------GKEALEVFDEMRRVGLQPDGVTLLVVLYACSH 280

Query: 363 LGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERMRRR-NVISW 419
            G++DQ       + K  FG          ++D+  + G L  A E+ E M+   + I W
Sbjct: 281 SGMIDQGIEFFNSMSKE-FGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVW 339

Query: 420 TSMINAFAIHGD 431
            ++++   IH +
Sbjct: 340 VALLSGCRIHAN 351


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/705 (34%), Positives = 385/705 (54%), Gaps = 39/705 (5%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           + +C +L   ++ H    KL    +   +  L  + + F            A S+F  +P
Sbjct: 225 LKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGI-------ARSLFDDMP 277

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
                  N  I  +  +     AL V  +M  EG+ ++  +   IL    +   +   M 
Sbjct: 278 FRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAML 337

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H    K G   D FV   L+ MY   G + DAR  F +M   D+V W+ +I  Y QN  
Sbjct: 338 IHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDD 397

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
                  F +M+++  +PD + L  + S  +++ +     +VH FI              
Sbjct: 398 PVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFI-------------- 443

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
                       M +G     L++++V+  A+V  Y++ G ++ A  +F+ +  KD+I W
Sbjct: 444 ------------MRRGW----LMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISW 487

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCG-MKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           + +I+GYA+N    EA++++  M+ C  + P++ T +S++ A AH+G L Q  +IH  + 
Sbjct: 488 NTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVI 547

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           K     D+ V   +ID+Y KCG L  A  +F ++ + + ++W ++I+   IHG A   L 
Sbjct: 548 KTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLK 607

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F +M DE + P+ VTF+ +L ACSH+G V+EG+  F  M  EY I P  +HYGCMVDL 
Sbjct: 608 LFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLL 666

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557
           GRA  L  A + ++ MP  P+  IWG+L+ ACR+HG IEL +FA+ +L ++D  + G  V
Sbjct: 667 GRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYV 726

Query: 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYE 617
           LLSNIYA   +W+ V ++R   +ERG+ K    S IE+N +V  F T ++SH +  +IYE
Sbjct: 727 LLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYE 786

Query: 618 KLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVK 677
           +L  + +++K  GY+PD    L D+E++EK  ++  HSE+LA+ +G+IS+   S IRI K
Sbjct: 787 ELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFK 846

Query: 678 NLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           NLRVC DCHN  K +S++  REIV+RD  RFHH+KDG+CSC DYW
Sbjct: 847 NLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 148/529 (27%), Positives = 261/529 (49%), Gaps = 53/529 (10%)

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML-NEGLTIDRFSFPPILKAIARAEG 132
           F QIP       N  I A   +     A+  F ++L    +  D ++FPP+LKA      
Sbjct: 174 FDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGT--- 230

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L++G ++H    KLGF  + FV   L+ MY   G    AR +FD M +RD+  W+ MI G
Sbjct: 231 LVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISG 290

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
             QNG   + L++ +EM++  ++ + + +  IL  C + G++S    +H ++I + +  D
Sbjct: 291 LIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFD 350

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             + + LI MYA  G ++ A+  F                                QM  
Sbjct: 351 LFVSNALINMYAKFGNLEDARKAF-------------------------------QQMFI 379

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
            D++ W+++I+ Y +N+ P  A   F +MQ+ G +PD +T++S+ S  A       ++ +
Sbjct: 380 TDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSV 439

Query: 373 HLYIDKNAF-GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           H +I +  +   D+ + NA++DMYAK G L+SA +VFE +  ++VISW ++I  +A +G 
Sbjct: 440 HGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGL 499

Query: 432 ARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
           A  A+  +  M++ + I PN  T++ +L A +H G + +G +I   +    N+       
Sbjct: 500 ASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKT-NLHLDVFVA 558

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQL 548
            C++D++G+   L +A+ L   +P   + V W ++++   +HG  E  L  F       +
Sbjct: 559 TCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGV 617

Query: 549 DPDHDGALVLLS----NIYAKDKRWQDVGELRKSMKERGI---LKERAC 590
            PDH   + LLS    + + ++ +W       + M+E GI   LK   C
Sbjct: 618 KPDHVTFVSLLSACSHSGFVEEGKW-----CFRLMQEYGIKPSLKHYGC 661



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 173/360 (48%), Gaps = 25/360 (6%)

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
           SYG       ID N   D    S+  T +A C    +   L     ++++ +ST +V+ Y
Sbjct: 110 SYGLGNQNEEIDFNFLFD----SSTKTPFAKC----LHALLVVAGKVQSIFISTRLVNLY 161

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE-MQVCGMKPDKVTM 353
           +  G V  +R  FDQ+ +KD+  W++MIS Y  N H  EA+  F + + V  ++PD  T 
Sbjct: 162 ANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTF 221

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
             V+ AC   G L   ++IH +  K  F  ++ V  ++I MY++ G    AR +F+ M  
Sbjct: 222 PPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPF 278

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           R++ SW +MI+    +G+A  AL   ++M+ E I  N VT + +L  C   G +      
Sbjct: 279 RDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIST---- 334

Query: 474 FASMTNEYNIPPKYEH----YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
            A + + Y I    E        +++++ +   L +A +  + M F  +VV W S++AA 
Sbjct: 335 -AMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQM-FITDVVSWNSIIAAY 392

Query: 530 RVHGEIELAE--FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587
             + +   A   F   QL    PD    LV L++I A+ +  ++   +   +  RG L E
Sbjct: 393 EQNDDPVTAHGFFVKMQLNGFQPDLL-TLVSLASIVAQSRDCKNSRSVHGFIMRRGWLME 451


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/653 (35%), Positives = 369/653 (56%), Gaps = 48/653 (7%)

Query: 81  PSRVSNKFIRAISWSHRPKH---------ALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
           PS V N  + + SW+ R +          ++ ++  ML  G + D FSFP ILK+ A   
Sbjct: 5   PSFVRNSAVASTSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLS 64

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI--VPWSVM 189
             + G Q+H    + G  ++PFV T L+ MY  CG + DAR +F++  +     V ++ +
Sbjct: 65  LPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNAL 124

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY  N    +   +F  MK + V  D + +  ++  C+    L  G ++H   +    
Sbjct: 125 ISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGT 184

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             +  + ++ ITMY  CG                                VE  R +FD+
Sbjct: 185 YSEVAVLNSFITMYMKCG-------------------------------SVESGRRLFDE 213

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M  K LI W+A+ISGY++N    + L+LF +M+  G+ PD  T++SV+S+CAHLG     
Sbjct: 214 MPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIG 273

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           Q +   ++ N F  ++ ++NA+I MYA+CG+L  AR VF+ M  ++++SWT+MI  + +H
Sbjct: 274 QEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMH 333

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G     L  F+ M    I P+G  F+ VL ACSH+GL D+G E+F +M  EY + P  EH
Sbjct: 334 GMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEH 393

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           Y C+VDL GRA  L EA+E +++MP  P+  +WG+L+ AC++H  +++AE A  ++++ +
Sbjct: 394 YSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFE 453

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P + G  VL+SNIY+  K  + +  +R  M+ER   K+   S +E   +V+ FL  DRSH
Sbjct: 454 PMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSH 513

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
           +QT++++  L+E+ +       V ++   +     EE       HSE+LA+ +G+++S  
Sbjct: 514 EQTEEVHRMLDELETS------VMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIP 567

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + I ++KNLRVCEDCH FIKLVSK+  R  V+RD +RFH++KDGVCSCKDYW
Sbjct: 568 GTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDASRFHYFKDGVCSCKDYW 620



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 124/287 (43%), Gaps = 4/287 (1%)

Query: 53  LLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG 112
           +L SF        S+     +F ++P       N  I   S +      L++F +M + G
Sbjct: 190 VLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSG 249

Query: 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR 172
           +  D F+   +L + A       G +V  L    GF  + F+   L+ MY  CG +  AR
Sbjct: 250 VCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKAR 309

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
            +FD M  + +V W+ MI  Y  +G+ +  L LF++M    + PD  V   +LSACS +G
Sbjct: 310 AVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSG 369

Query: 233 NLSYG-EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAM 290
               G E       +  +       S L+ +    G +D A    D + ++ +  V  A+
Sbjct: 370 LTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGAL 429

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDL--ICWSAMISGYAENNHPQEAL 335
           +        V+ A L F +++E +   I +  ++S    ++  QE +
Sbjct: 430 LGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGI 476


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/634 (37%), Positives = 378/634 (59%), Gaps = 23/634 (3%)

Query: 8   TKPLTLPTST---------AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFS 58
           +KPL L TS+          + +C S+ H+KQ   QIL+    H S ++L        F 
Sbjct: 19  SKPLHLSTSSHFTKKSCIFLLKNCKSMQHLKQIQTQILRTGF-HQSGDTL------NKFM 71

Query: 59  LPTTTPS--SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTID 116
           +  T PS  +L+YA  IF+ I  P   + N  I+A + +   + A+ +F ++  EGL+ D
Sbjct: 72  VCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPD 131

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
            F++P + KAI     + EG +V+G   K G   D +V   L+ MY   G++ + R +F+
Sbjct: 132 NFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFE 191

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM-SNVEPDEMVLSKILSACSRAGNLS 235
           +M  RD+V W+V+I GY +   +++ +++F  M+  S++ P+E  +   LSAC     L 
Sbjct: 192 EMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLE 251

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G+ +H ++ +  +     + + L+ MY  CG + +A+ +F+ + +K ++  T+MVSGY 
Sbjct: 252 LGKEIHRYVREQ-LGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYV 310

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
             GQ+++AR +F++   +D++ W+AMI+GY + N   +A+ LF EMQ+  + PD+ T+++
Sbjct: 311 NCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVA 370

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           +++ CA LG L+Q + IH YID+N    D  V  A+I+MYAKCG +E + E+F  ++ ++
Sbjct: 371 LLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKD 430

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
             SWTS+I   A++G    AL  F +M    + P+ +TFIGVL ACSH GLV+EGR+ F 
Sbjct: 431 TASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFR 490

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI---WGSLMAACRVH 532
           SMT  Y I PK EHYGC++DL GRA  L EA EL+E  P   N VI   +G+L++ACR H
Sbjct: 491 SMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTH 550

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
           G +E+ E  AK+L+ ++        LL+NIYA   RW+DV ++R+ MK+ G+ K   CS 
Sbjct: 551 GNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSS 610

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL 626
           +E+N  V+EFL  D SH +  +IY  L+ +   L
Sbjct: 611 VEVNGIVHEFLVGDASHPEMREIYSMLDSIAKPL 644


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/603 (38%), Positives = 365/603 (60%), Gaps = 18/603 (2%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACG-KILD-ARLMFDKMSYRDIVPWSVMIDGYFQ 195
           Q+H    K     DP     L+        + LD AR +F  M   +   ++ +I    +
Sbjct: 29  QLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALSE 88

Query: 196 -NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
            N   D +L   E ++  +VEP+      +  AC RA  L  G  VH   +   +  D  
Sbjct: 89  SNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEF 148

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLL---------------KNLVVSTAMVSGYSRAGQ 299
           + S ++ MY +CG M+ A  LF + +                 ++V+   M+ GY R G+
Sbjct: 149 VVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGE 208

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           +E AR +FD+M ++ ++ W+ MI+GYA++ H +EA+++F EMQ+  + P+ VT++SV+ A
Sbjct: 209 LEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPA 268

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
            + LG L+  + +HLY  +N  G D  + +A+IDMYAKCGS+E A +VFE + +RNV++W
Sbjct: 269 MSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTW 328

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           +++I   A+HG A++ L  F  M+   + P+ VT+IG+L ACSHAGLV+EGR  F  M  
Sbjct: 329 STIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVR 388

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
              + P+ EHYGCMVDL GRA LL E+ EL+  MP  P+ VIW +L+ AC++HG +E+ +
Sbjct: 389 VSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGK 448

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
             A+ L++L P   G+ V LSNIYA    W+ V ++R  MKE  + K+  CS IE++  +
Sbjct: 449 RVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVI 508

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
           +EFL  D SH ++ +I+  L E+   L   GY P+    L ++++E+K   + +HSEK+A
Sbjct: 509 HEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNYHSEKIA 568

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           + +GLIS++  + +RI KNLR+CEDCH+ IKL+SK+Y R+I++RDR RFHH+ +G CSC 
Sbjct: 569 IAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGSCSCM 628

Query: 720 DYW 722
           DYW
Sbjct: 629 DYW 631



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 139/480 (28%), Positives = 227/480 (47%), Gaps = 89/480 (18%)

Query: 2   STLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           ST+   T  L  P+S     C ++  +KQ HAQ++K +         L    L  FS   
Sbjct: 3   STIFTSTTSLWPPSS--FFPCKTMQDLKQLHAQMIKTAQIRDP----LAAAELLRFS-AV 55

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSF 120
           +    L YA  IF  +  P     N  IRA+S S+ P  AL VF++M+ +  +  + F+F
Sbjct: 56  SDHRDLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTF 115

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD---------- 170
           P + KA  RAE L EG QVHGL  K G  SD FV + +V MY +CG + D          
Sbjct: 116 PSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVF 175

Query: 171 ------------------------------------ARLMFDKMSYRDIVPWSVMIDGYF 194
                                               AR +FD+M  R +V W+VMI GY 
Sbjct: 176 VDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYA 235

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           Q+G F E + +F EM+M+ V P+ + L  +L A SR G L  G+ VH + + NN+ +D  
Sbjct: 236 QSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDV 295

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           L S LI MYA CG ++ A  +F+ +  +N+V  + +++G +  G+ +D            
Sbjct: 296 LGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKD------------ 343

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
                               L  F +M+  G+ P  VT + ++SAC+H G++++ +    
Sbjct: 344 -------------------TLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFD 384

Query: 375 YIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD 431
           ++ + + G + R+ +   ++D+  + G LE + E+   M  + + + W +++ A  +HG+
Sbjct: 385 HMVRVS-GLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGN 443


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/639 (35%), Positives = 367/639 (57%), Gaps = 33/639 (5%)

Query: 86  NKFIRAISWSHRPKHALKVFLKM-LNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
           N  I   S     + A ++  KM + + + ++  +   +L         L+  ++HG   
Sbjct: 368 NSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYAL 427

Query: 145 KLGF-GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
           + GF  SD  V    V  Y  CG +  A  +F  M  + +  W+ +I G+ QNG   + L
Sbjct: 428 RHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKAL 487

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
           +L+  M+ S +EPD   ++ +LSAC+R  +LS G+ +H  ++ N   LD  +  +L+++Y
Sbjct: 488 DLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLY 547

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
             CG          K+LL                     A+L FD M EK+L+CW+ MI+
Sbjct: 548 VQCG----------KILL---------------------AKLFFDNMEEKNLVCWNTMIN 576

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           G+++N  P +AL +F++M    + PD+++++  + AC+ +  L   + +H +  K+    
Sbjct: 577 GFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTE 636

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
              V  ++IDMYAKCG +E ++ +F+R+  +  ++W  +I  + IHG  R A+  F  M+
Sbjct: 637 HSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQ 696

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
           +    P+ VTFI +L AC+HAGLV EG E    M + + I PK EHY C+VD+ GRA  L
Sbjct: 697 NAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRL 756

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563
            EALELV  +P  P+  IW SL+++CR + ++++ E  A +LL+L PD     VL+SN Y
Sbjct: 757 NEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFY 816

Query: 564 AKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVI 623
           A+  +W +V ++R+ MKE G+ K+  CS IE+  +V  FL  D S  Q+ +I +   E+ 
Sbjct: 817 ARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELE 876

Query: 624 SELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCE 683
            ++   GY PD    L +LE++EK +++  HSEKLA+ +GL+++ K + +R+ KNLR+C 
Sbjct: 877 KKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICV 936

Query: 684 DCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           DCHN IKLVSK+  REI++RD  RFHH+K+G CSC DYW
Sbjct: 937 DCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 191/378 (50%), Gaps = 35/378 (9%)

Query: 51  KLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLN 110
           +L+  +F        SL+YA  +F  + +      N  I     +  P+ AL ++L M  
Sbjct: 436 ELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRG 495

Query: 111 EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD 170
            GL  D F+   +L A AR + L  G ++HG   + GF  D F+   LV +Y  CGKIL 
Sbjct: 496 SGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILL 555

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           A+L FD M  +++V W+ MI+G+ QN    + L++F +M  S + PDE+ +   L ACS+
Sbjct: 556 AKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQ 615

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
              L  G+ +H F + +++   + +  +LI MYA CGCM+ ++ +FD+V LK  V    +
Sbjct: 616 VSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVL 675

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           ++GY   G                               H ++A++LF  MQ  G +PD 
Sbjct: 676 ITGYGIHG-------------------------------HGRKAIELFKSMQNAGFRPDS 704

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVF 408
           VT +++++AC H G++ +    +L   ++ FG   ++ +   ++DM  + G L  A E+ 
Sbjct: 705 VTFIALLTACNHAGLVAEGLE-YLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELV 763

Query: 409 ERM-RRRNVISWTSMINA 425
             +  + +   W+S++++
Sbjct: 764 NELPDKPDSRIWSSLLSS 781



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 144/603 (23%), Positives = 263/603 (43%), Gaps = 89/603 (14%)

Query: 38  LSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHR 97
           +S S H QN ++L   L +      +P   Y +  +F+        + N  +     +  
Sbjct: 119 ISTSPHFQNDVVLITRLVTMYSICDSP---YDSCLVFNASRRKNLFLWNALLSGYLRNSL 175

Query: 98  PKHALKVFLKMLN-EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQT 156
            + A+ VF++M++      D F+ P ++KA      +  G  VHG   K    SD FV  
Sbjct: 176 FRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGN 235

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN--V 214
            L+ MYG  G +  A  +FDKM  R++V W+ ++    +NG+F+E   LF+ +   +  +
Sbjct: 236 ALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGL 295

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
            PD   +  ++  C+R G +  G   H   +   +  +  + S+L+ MY+ CG +  A+ 
Sbjct: 296 MPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARV 355

Query: 275 LFDKVLLKNLVVSTAMVSGYS------------RAGQVEDARLIFD-------------- 308
           LFD    KN++   +M+ GYS            R  Q+ED   + +              
Sbjct: 356 LFDTN-EKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEI 414

Query: 309 ---------------QMVEKDLICWSAMISGYA--------------------------- 326
                            ++ D +  +A ++GYA                           
Sbjct: 415 QFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALI 474

Query: 327 ----ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
               +N  P++AL L+  M+  G++PD  T+ S++SACA L  L   + IH  + +N F 
Sbjct: 475 GGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFE 534

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            D  +  +++ +Y +CG +  A+  F+ M  +N++ W +MIN F+ +    +AL  F++M
Sbjct: 535 LDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQM 594

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC-MVDLFGRAN 501
               I P+ ++ IG L ACS    +  G+E+       +    ++    C ++D++ +  
Sbjct: 595 LSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSH--LTEHSFVTCSLIDMYAKCG 652

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRVHGE----IELAEFAAKQLLQLDPDHDGALV 557
            + ++  + + +     V  W  L+    +HG     IEL  F + Q     PD    + 
Sbjct: 653 CMEQSQNIFDRVHLKGEVT-WNVLITGYGIHGHGRKAIEL--FKSMQNAGFRPDSVTFIA 709

Query: 558 LLS 560
           LL+
Sbjct: 710 LLT 712



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 120/277 (43%), Gaps = 67/277 (24%)

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
           NL + +  SN +P +++   +L  C    N+  G  +H FI     +   H Q+      
Sbjct: 80  NLNDVVSSSNSKPKQLI-GLLLQLCGEYKNIEIGRKIHNFI-----STSPHFQN------ 127

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
                              ++V+ T +V+ YS      D+ L+F+    K+L  W+A++S
Sbjct: 128 -------------------DVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLS 168

Query: 324 GYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
           GY  N+  ++A+ +F EM  +    PD  T+  VI AC  +  +   + +H +  K    
Sbjct: 169 GYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVL 228

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            D+ V NA+I MY K G +ESA +VF++M +RN++SW S                     
Sbjct: 229 SDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNS--------------------- 267

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
                         V+YAC   G+ +E   +F  + N
Sbjct: 268 --------------VMYACLENGVFEESYGLFKGLLN 290



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 116/258 (44%), Gaps = 9/258 (3%)

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA-FGGDLRVNNAIIDMYAKCGSLESAR 405
           KP ++  L ++  C     ++  ++IH +I  +  F  D+ +   ++ MY+ C S   + 
Sbjct: 91  KPKQLIGL-LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSC 149

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHA 464
            VF   RR+N+  W ++++ +  +   R+A+  F +M       P+  T   V+ AC   
Sbjct: 150 LVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGV 209

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGS 524
             V  G  +         +   +     ++ ++G+   +  A+++ + MP   N+V W S
Sbjct: 210 YDVRLGEAVHGFALKTKVLSDVFVG-NALIAMYGKFGFVESAVKVFDKMP-QRNLVSWNS 267

Query: 525 LMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584
           +M AC  +G  E +    K LL  D   +G +  ++ +          GE+R  M   G+
Sbjct: 268 VMYACLENGVFEESYGLFKGLLNGD---EGLMPDVATMVTVIPLCARQGEVRLGMVFHGL 324

Query: 585 -LKERACSRIEMNNEVYE 601
            LK   C  +++N+ + +
Sbjct: 325 ALKLGLCGELKVNSSLLD 342


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 256/719 (35%), Positives = 392/719 (54%), Gaps = 45/719 (6%)

Query: 9   KPLTLPTSTAISSCSSLTHM---KQTHAQILK--LSHSHHSQNSLLLKLLLTSFSLPTTT 63
           +P  +  ++ +++C+S+  +   KQ H+ +LK  +S  + ++ SLL  L +    + T  
Sbjct: 242 RPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLL-DLYVKCGDIET-- 298

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
                 A  IF+        + N  + A         + ++F +M   G+  ++F++P I
Sbjct: 299 ------AHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCI 352

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L+       +  G Q+H L  K GF SD +V   L+ MY   G +  AR + + +  RD+
Sbjct: 353 LRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDV 412

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           V W+ MI GY Q+   +E L  F+EM+   V PD + L+   SAC+    +  G  +H  
Sbjct: 413 VSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHAR 472

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           +  +  A D  + +TL+ +YA C                               G+ E+A
Sbjct: 473 VYVSGYAADISIWNTLVNLYARC-------------------------------GRSEEA 501

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
             +F ++  KD I W+ +ISG+ ++   ++AL +F +M   G K +  T +S ISA A+L
Sbjct: 502 FSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANL 561

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
             + Q +++H    K     +  V NA+I +Y KCGS+E A+ +F  M  RN +SW ++I
Sbjct: 562 ADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTII 621

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
            + + HG    AL  F++MK E + PN VTFIGVL ACSH GLV+EG   F SM+N Y +
Sbjct: 622 TSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGL 681

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
            P  +HY C+VD+ GRA  L  A   V+ MP   N +IW +L++AC+VH  IE+ E AAK
Sbjct: 682 NPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAK 741

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
            LL+L+P    + VLLSN YA   +W +  ++RK MK+RGI KE   S IE+ N V+ F 
Sbjct: 742 HLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFF 801

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYG 663
             DR H  +DQIY+ L+E+   L   GY  +  +   + E E+K      HSEKLA+ +G
Sbjct: 802 VGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFG 861

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           L++      +R++KNLRVC+DCH+++K  S+V  REIV+RD  RFHH+  G CSC DYW
Sbjct: 862 LMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 206/420 (49%), Gaps = 35/420 (8%)

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
           +++H      G G+D  +   L+ +Y   G +  AR +F ++S RD V W  M+ GY Q+
Sbjct: 63  LEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQS 122

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           GL  E   L+ +M  + V P   VLS +LSAC++    + G  +H  +       +  + 
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           + LI +Y   G   +A+                                +F  M+  D +
Sbjct: 183 NALIALYLGFGSFKLAE-------------------------------RVFCDMLFCDRV 211

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            ++ +ISG+A+  H + AL++F+EMQ+ G++PD VT+ S+++ACA +G L + +++H Y+
Sbjct: 212 TFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYL 271

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            K     D     +++D+Y KCG +E+A ++F    R NV+ W  M+ A+    D   + 
Sbjct: 272 LKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSF 331

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             F +M+   I PN  T+  +L  C+  G ++ G +I  S++ +          G ++D+
Sbjct: 332 EIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIH-SLSIKNGFESDMYVSGVLIDM 390

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDG 554
           + +   L +A +++E +    +VV W S++A    H   E  LA F   Q   + PD+ G
Sbjct: 391 YSKYGCLDKARKILEMLE-KRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIG 449



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 201/430 (46%), Gaps = 33/430 (7%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           K A +++ +M    +    +    +L A  + +   +G  +H    K  F S+ FV   L
Sbjct: 126 KEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNAL 185

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + +Y   G    A  +F  M + D V ++ +I G+ Q G  +  L +F+EM++S + PD 
Sbjct: 186 IALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDC 245

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           + ++ +L+AC+  G+L  G+ +H +++   ++ D   + +L+ +Y  CG           
Sbjct: 246 VTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCG----------- 294

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
                                +E A  IF+     +++ W+ M+  Y + +   ++ ++F
Sbjct: 295 --------------------DIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIF 334

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            +MQ  G+ P++ T   ++  C   G ++  ++IH    KN F  D+ V+  +IDMY+K 
Sbjct: 335 GQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKY 394

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G L+ AR++ E + +R+V+SWTSMI  +  H     AL  F +M+D  + P+ +      
Sbjct: 395 GCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAA 454

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            AC+    + +G +I A +            +  +V+L+ R     EA  L   +    +
Sbjct: 455 SACAGIKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEEAFSLFREIEH-KD 512

Query: 519 VVIWGSLMAA 528
            + W  L++ 
Sbjct: 513 EITWNGLISG 522


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/553 (39%), Positives = 332/553 (60%), Gaps = 39/553 (7%)

Query: 170 DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229
           DAR  FD M  +D+  W+ MI    Q GL  E   LF  M      P++  +S       
Sbjct: 122 DARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAM------PEKNCVS------- 168

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
                                      S +++ Y  CG +D A   F    +++++  TA
Sbjct: 169 --------------------------WSAMVSGYVACGDLDAAVECFYAAPMRSVITWTA 202

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
           M++GY + G+VE A  +F +M  + L+ W+AMI+GY EN   ++ L+LF  M   G+KP+
Sbjct: 203 MITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPN 262

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
            +++ SV+  C++L  L   +++H  + K     D     +++ MY+KCG L+ A E+F 
Sbjct: 263 ALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFI 322

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
           ++ R++V+ W +MI+ +A HG  + AL  F++MK E + P+ +TF+ VL AC+HAGLVD 
Sbjct: 323 QIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDL 382

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G + F +M  ++ I  K EHY CMVDL GRA  L EA++L+++MPF P+  I+G+L+ AC
Sbjct: 383 GVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGAC 442

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
           R+H  + LAEFAAK LL+LDP      V L+N+YA   RW  V  +R+SMK+  ++K   
Sbjct: 443 RIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPG 502

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
            S IE+N+ V+ F ++DR H +   I+EKL ++  ++K AGYVPD+   L D+ +E K +
Sbjct: 503 YSWIEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQ 562

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
           ++LWHSEKLA+ +GL+       IR+ KNLRVC DCH+  K +S +  REI++RD TRFH
Sbjct: 563 LLLWHSEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFH 622

Query: 710 HYKDGVCSCKDYW 722
           H+KDG CSC+DYW
Sbjct: 623 HFKDGFCSCRDYW 635



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 163/385 (42%), Gaps = 81/385 (21%)

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
           P    YA  +F +IP P + VS   + A  W H   H  + F   +      D  S+  +
Sbjct: 86  PGHFEYARQLFEKIPQPNT-VSYNIMLACHWHHLGVHDARGFFDSMP---LKDVASWNTM 141

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDP----FVQTGLVGMYGACGKILDARLMFDKMS 179
           + A+A+   + E  ++        F + P       + +V  Y ACG +  A   F    
Sbjct: 142 ISALAQVGLMGEARRL--------FSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAP 193

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM---------------------------- 211
            R ++ W+ MI GY + G  +    LF+EM M                            
Sbjct: 194 MRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRT 253

Query: 212 ---SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
              + V+P+ + L+ +L  CS    L  G+ VH+ +    ++ D    ++L++MY+ CG 
Sbjct: 254 MLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGD 313

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           +  A  LF ++  K++V   AM+SGY++ G  + A                         
Sbjct: 314 LKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKA------------------------- 348

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
                 L+LF+EM+  G+KPD +T ++V+ AC H G++D   + +    +  FG + +  
Sbjct: 349 ------LRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQ-YFNTMRRDFGIETKPE 401

Query: 389 N--AIIDMYAKCGSLESAREVFERM 411
           +   ++D+  + G L  A ++ + M
Sbjct: 402 HYACMVDLLGRAGKLSEAVDLIKSM 426



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 148/332 (44%), Gaps = 30/332 (9%)

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           +K++++  R G++     V E   D  V       S L       G  + A+ LF+K+  
Sbjct: 45  NKLIASYVRCGDIDSAVRVFE---DMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKIPQ 101

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
            N V    M++ +     V DAR  FD M  KD+  W+ MIS  A+     EA +LF+ M
Sbjct: 102 PNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAM 161

Query: 342 QVCGMKPDK--VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR---VNNAIIDMYA 396
                 P+K  V+  +++S     G LD A           +   +R      A+I  Y 
Sbjct: 162 ------PEKNCVSWSAMVSGYVACGDLDAAVECF-------YAAPMRSVITWTAMITGYM 208

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           K G +E A  +F+ M  R +++W +MI  +  +G A + L  F  M +  + PN ++   
Sbjct: 209 KFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTS 268

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           VL  CS+   +  G+++   +  +  +         +V ++ +   L++A EL   +P  
Sbjct: 269 VLLGCSNLSALQLGKQVH-QLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIP-R 326

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
            +VV W ++++    HG       A K+ L+L
Sbjct: 327 KDVVCWNAMISGYAQHG-------AGKKALRL 351



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 17/155 (10%)

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH-GDARNALIFFNKMKDES 446
           +N +I  Y +CG ++SA  VFE M+ ++ ++W S++ AFA   G    A   F K+    
Sbjct: 44  SNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKIP--- 100

Query: 447 IDPNGVTFIGVLYAC--SHAGLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRANLL 503
             PN V++  ++ AC   H G V + R  F SM      P K    +  M+    +  L+
Sbjct: 101 -QPNTVSY-NIMLACHWHHLG-VHDARGFFDSM------PLKDVASWNTMISALAQVGLM 151

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
            EA  L   MP   N V W ++++     G+++ A
Sbjct: 152 GEARRLFSAMP-EKNCVSWSAMVSGYVACGDLDAA 185


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/658 (35%), Positives = 367/658 (55%), Gaps = 32/658 (4%)

Query: 66   SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
            S+  A ++F Q+        N  I   + S   + ++ +F+ +L  GL  D+F+   +L+
Sbjct: 956  SVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLR 1015

Query: 126  AIARAEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            A +   G      Q+H    K G   D FV T L+ +Y   GK+ +A  +F      D+ 
Sbjct: 1016 ACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLA 1075

Query: 185  PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
             W+ M+ GY  +G F + L L+  M+ S    +++ L+    A      L  G+ +   +
Sbjct: 1076 SWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVV 1135

Query: 245  IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
            +     LD  + S ++ MY  CG                               ++E AR
Sbjct: 1136 VKRGFNLDLFVISGVLDMYLKCG-------------------------------EMESAR 1164

Query: 305  LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
             IF+++   D + W+ MISG  EN   + AL  ++ M++  ++PD+ T  +++ AC+ L 
Sbjct: 1165 RIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLT 1224

Query: 365  VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
             L+Q ++IH    K     D  V  +++DMYAKCG++E AR +F+R     + SW +MI 
Sbjct: 1225 ALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIV 1284

Query: 425  AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
              A HG+A  AL FF +MK   + P+ VTFIGVL ACSH+GLV E  E F SM   Y I 
Sbjct: 1285 GLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIE 1344

Query: 485  PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
            P+ EHY C+VD   RA  +REA +++ +MPF  +  ++ +L+ ACRV  + E  +  A++
Sbjct: 1345 PEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEK 1404

Query: 545  LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
            LL L+P    A VLLSN+YA   +W++V   R  M++  + K+   S +++ N+V+ F+ 
Sbjct: 1405 LLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVA 1464

Query: 605  ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
             DRSH++TD IY K+  ++  ++  GY+PD   ALVD+E+E+K   + +HSEKLA+ YGL
Sbjct: 1465 GDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGL 1524

Query: 665  ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + +   + +R++KNLRVC DCHN IK +SKV+ RE+V+RD  RFHH++ GVCSC DYW
Sbjct: 1525 MKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 144/582 (24%), Positives = 255/582 (43%), Gaps = 61/582 (10%)

Query: 21   SCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAP 80
            + S L   K+ HA+IL    S H  +  L   L+T +S       SL  A  +F   P  
Sbjct: 638  AASDLPLGKRAHARILT---SGHHPDRFLTNNLITMYS----KCGSLSSARKLFDTTPDT 690

Query: 81   PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVH 140
               +        + + + +    +F  +    ++  R +  P+ K    +        +H
Sbjct: 691  SRDLVTWNAILSAHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLH 750

Query: 141  GLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
            G   K+G   D FV   LV +Y   G+I +AR++FD M  RD+V W+VM+  Y   GL  
Sbjct: 751  GYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEY 810

Query: 201  EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL---------SYG-------------- 237
            E L LF E   + + PD++ L  +        N+         +YG              
Sbjct: 811  EALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSD 870

Query: 238  ------------------EAVHEFI--IDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
                              EAV  F+  I++ VA D      ++++ A   C+++ K +  
Sbjct: 871  VIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHG 930

Query: 278  KVLLKNL----VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
             V+   L     V   +++ Y + G V  AR +F QM E DL+ W+ MISG A +   + 
Sbjct: 931  IVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEEC 990

Query: 334  ALKLFNEMQVCGMKPDKVTMLSVISACAHL-GVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
            ++ +F ++   G+ PD+ T+ SV+ AC+ L G    A +IH    K     D  V+  +I
Sbjct: 991  SVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLI 1050

Query: 393  DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
            D+Y+K G +E A  +F      ++ SW +M++ + + GD   AL  +  M++     N +
Sbjct: 1051 DVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQI 1110

Query: 453  TFIGVLYACSHAGLVDEGREIFASMTNE-YNIPPKYEHYGCMVDLFGRANLLREALELVE 511
            T      A      + +G++I A +    +N+         ++D++ +   +  A  +  
Sbjct: 1111 TLANAAKAAGGLVGLKQGKQIQAVVVKRGFNL--DLFVISGVLDMYLKCGEMESARRIFN 1168

Query: 512  TMPFAPNVVIWGSLMAACRVHGEIELAEFAAK--QLLQLDPD 551
             +P +P+ V W ++++ C  +G+ E A F     +L ++ PD
Sbjct: 1169 EIP-SPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPD 1209



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 165/392 (42%), Gaps = 51/392 (13%)

Query: 123  ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM--SY 180
            IL+    A  L  G + H      G   D F+   L+ MY  CG +  AR +FD    + 
Sbjct: 632  ILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTS 691

Query: 181  RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
            RD+V W+ ++  +       +  +LF  ++ S V      L+ +   C  + + S  E++
Sbjct: 692  RDLVTWNAILSAHADKA--RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESL 749

Query: 241  HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
            H + +   +  D  +   L+ +YA  G +  A+ LFD + L+++V+   M+  Y   G  
Sbjct: 750  HGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLE 809

Query: 301  EDARLIFDQM-----------------------------------------------VEK 313
             +A L+F +                                                   
Sbjct: 810  YEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGS 869

Query: 314  DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
            D+I W+  +S + +     EA+  F +M    +  D +T + ++S  A L  L+  ++IH
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 374  LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
              + ++     + V N +I+MY K GS+  AR VF +M   +++SW +MI+  A+ G   
Sbjct: 930  GIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEE 989

Query: 434  NALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
             ++  F  +    + P+  T   VL ACS  G
Sbjct: 990  CSVGMFVDLLRGGLLPDQFTVASVLRACSSLG 1021


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 271/764 (35%), Positives = 410/764 (53%), Gaps = 81/764 (10%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSF 57
           M   + P+   T P    + +C++L  +    Q HA + +L  +    +      L+ ++
Sbjct: 43  MQAHAVPSNNFTFPA--LLKACAALRRLLPTLQVHAYLTRLGLA---ADRFSAAALVDAY 97

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPSRVSN--KFIRAISWSHRPKHALKVFLKML------ 109
                     YYA  +F ++P     V +    I A S +     A   F +M       
Sbjct: 98  G----KCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWD 153

Query: 110 -NEGLTIDRFSFPPILKAIARAEG---LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC 165
            +E   +D  S   ++ A A   G   L  G  VHGL  K GFG    +   +V MY AC
Sbjct: 154 GSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSAC 213

Query: 166 GKILDARLMFDKM--SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM---KMSNVEPDEMV 220
             +  A  +F+ +    RD+V W+ +I G+  NG  +  L  FE+M     S VEP+ + 
Sbjct: 214 KDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVT 273

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           +  +L +C+  G +     VHE+I   + +L                           ++
Sbjct: 274 VIALLKSCAELGCVETSSWVHEYISSRHSSL---------------------------LV 306

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            K++VV TA++  ++R G +  AR IFD +  K+++CWSAMI+GY + + P+EAL+LF +
Sbjct: 307 AKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQ 366

Query: 341 MQVCG------MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
           M + G      +KP+ VT++SVI+AC+ LG    A  IH Y        D R+ +A+IDM
Sbjct: 367 MLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDM 426

Query: 395 YAKCGSLESAREVFERM--RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
            AKCG +E  R+VF  M    R V+SW+SMI A  IHG+ + AL  F++M+    +PN +
Sbjct: 427 CAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEI 486

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
           T+I VL ACSHAGLV++G+  F SM  +Y + P  +HY C+VDL GRA  L EA  ++  
Sbjct: 487 TYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILN 546

Query: 513 MPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572
           MP   ++ +WGSL+AAC +HG  +L E   K++L LD +  G  VLL+N+Y    RW DV
Sbjct: 547 MPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDV 606

Query: 573 GELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL-KPAGY 631
             +R  ++  G+ K    S IE+ NEVY F+  DRSH +++ IY++L+ +   + K A Y
Sbjct: 607 VRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAKY 666

Query: 632 VPDIHSALVDLEDEEKREVIL---WHSEKLALCYGLI----------SSKKDSCIRIVKN 678
           V +     +++ED +   +I    +HSE+LA+ +GLI          S +  + IRI KN
Sbjct: 667 VTETG---LNVEDGDIAGLIXRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRITKN 723

Query: 679 LRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LRVC DCH + KLVSKV  RE+++RD  RFHH++DG CSC DYW
Sbjct: 724 LRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 218/469 (46%), Gaps = 62/469 (13%)

Query: 95  SHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFV 154
           +  P+ AL  F +M    +  + F+FP +LKA A    LL  +QVH   T+LG  +D F 
Sbjct: 30  TQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFS 89

Query: 155 QTGLVGMYGACGKILDARLMFDKM--SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK-M 211
              LV  YG CG    A  +FD+M     D+V W+ +I  Y  NG  DE    F  M+ M
Sbjct: 90  AAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWM 149

Query: 212 SNVEPDE------MVLSKILSACS---RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
              +  E      + L  ++SAC+    +  L  G AVH  ++     +  HL ++++ M
Sbjct: 150 RGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHM 209

Query: 263 YANCGCMDMAKGLFDKVLL--KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
           Y+ C  +  A  +F+ + +  +++V   +++SG+   G+ E A   F+ MV +       
Sbjct: 210 YSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEG------ 263

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN- 379
                                    ++P++VT+++++ +CA LG ++ +  +H YI    
Sbjct: 264 ----------------------TSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRH 301

Query: 380 ---AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
                  D+ V  A++DM+A+CG+L  ARE+F+ +  +NV+ W++MI  +        AL
Sbjct: 302 SSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEAL 361

Query: 437 IFFNKMKDES------IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH- 489
             F +M  E       + PN VT + V+ ACS  G         ASM ++Y +    +  
Sbjct: 362 RLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRS-----ASMIHKYAVATGLDQD 416

Query: 490 ---YGCMVDLFGRANLLREALELVETMPFAPNVVI-WGSLMAACRVHGE 534
                 ++D+  +   +    ++   M  +   V+ W S++ A  +HGE
Sbjct: 417 ARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGE 465



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 110/242 (45%), Gaps = 21/242 (8%)

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           KD   W+++I+  A  N PQ AL  F  MQ   +  +  T  +++ ACA L  L    ++
Sbjct: 16  KDTFHWNSLIAKNATQN-PQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQV 74

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR--NVISWTSMINAFAIHG 430
           H Y+ +     D     A++D Y KCG    A +VF+ M     +V+SWT++I+A++ +G
Sbjct: 75  HAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNG 134

Query: 431 DARNALIFFNKMK-------DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
               A   F +M+        E    + V+   ++ AC+    V  G       +  + +
Sbjct: 135 CVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACA----VGCGSNCLRRGSAVHGL 190

Query: 484 PPKY-----EHYG-CMVDLFGRANLLREALELVETMPFAP-NVVIWGSLMAACRVHGEIE 536
             KY      H G  MV ++     +  A  +   +P    +VV W SL++   ++GE E
Sbjct: 191 VVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAE 250

Query: 537 LA 538
            A
Sbjct: 251 RA 252


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 246/706 (34%), Positives = 381/706 (53%), Gaps = 40/706 (5%)

Query: 18   AISSCSSLTHMKQTHAQILKLSHSHHSQ-NSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
            A S+  +L   +Q HA   KL  + +++    LL L      + T        AL  F +
Sbjct: 398  ACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIET--------ALDYFLE 449

Query: 77   IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
                   + N  + A       +++ ++F +M  E +  +++++P ILK   R   L  G
Sbjct: 450  TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELG 509

Query: 137  MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
             Q+H    K  F  + +V + L+ MY   GK+  A  +  + + +D+V W+ MI GY Q 
Sbjct: 510  EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQY 569

Query: 197  GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
               D+ L  F +M    +  DE+ L+  +SAC+    L  G+ +H     +  + D   Q
Sbjct: 570  NFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQ 629

Query: 257  STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
            + L+T+Y                               SR G++E++ L F+Q    D I
Sbjct: 630  NALVTLY-------------------------------SRCGKIEESYLAFEQTEAGDNI 658

Query: 317  CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
             W+A++SG+ ++ + +EAL++F  M   G+  +  T  S + A +    + Q +++H  I
Sbjct: 659  AWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVI 718

Query: 377  DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
             K  +  +  V NA+I MYAKCGS+  A + F  +  +N +SW ++INA++ HG    AL
Sbjct: 719  TKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEAL 778

Query: 437  IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
              F++M   ++ PN VT +GVL ACSH GLVD+G   F SM +EY + PK EHY C+VD+
Sbjct: 779  DSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDM 838

Query: 497  FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
              RA LL  A E ++ MP  P+ ++W +L++AC VH  +E+ EFAA  LL+L+P+     
Sbjct: 839  LTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATY 898

Query: 557  VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
            VLLSN+YA  K+W      R+ MKE+G+ KE   S IE+ N ++ F   D++H   D+I+
Sbjct: 899  VLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIH 958

Query: 617  EKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIV 676
            E   ++       GYV D  S L +L+ E+K  +I  HSEKLA+ +GL+S      I ++
Sbjct: 959  EYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVM 1018

Query: 677  KNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            KNLRVC DCH +IK VSKV  REI++RD  RFHH++ G CSCKDYW
Sbjct: 1019 KNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 142/531 (26%), Positives = 247/531 (46%), Gaps = 51/531 (9%)

Query: 10  PLTLPTSTAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P     S+ +S+C  +  ++   Q H  +LKL  S  S   +   L+   F L      +
Sbjct: 286 PTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS--SDTYVCNALVSLYFHL-----GN 338

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L  A  IFS +    +   N  I  +S     + A+++F +M  +GL  D  +   ++ A
Sbjct: 339 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVA 398

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            +    L  G Q+H   TKLGF S+  ++  L+ +Y  C  I  A   F +    ++V W
Sbjct: 399 CSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLW 458

Query: 187 SVMIDGYFQNGLFDEVLN---LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           +VM+  Y   GL D++ N   +F +M++  + P++     IL  C R G+L  GE +H  
Sbjct: 459 NVMLVAY---GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQ 515

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           II  N  L+A++ S LI MYA  G +D A  +  +   K++V  T M++GY+        
Sbjct: 516 IIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT-------- 567

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
                                  + N   +AL  F +M   G++ D+V + + +SACA L
Sbjct: 568 -----------------------QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGL 604

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
             L + Q+IH     + F  DL   NA++ +Y++CG +E +   FE+    + I+W +++
Sbjct: 605 QALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALV 664

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
           + F   G+   AL  F +M  E ID N  TF   + A S    + +G+++ A +T +   
Sbjct: 665 SGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVIT-KTGY 723

Query: 484 PPKYEHYGCMVDLFGRANLLREA-LELVETMPFAPNVVIWGSLMAACRVHG 533
             + E    ++ ++ +   + +A  + +E      N V W +++ A   HG
Sbjct: 724 DSETEVCNALISMYAKCGSISDAEKQFLEVS--TKNEVSWNAIINAYSKHG 772



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/509 (24%), Positives = 240/509 (47%), Gaps = 47/509 (9%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83
           SL   ++ H+QILKL       N  L + L   +         LY A  +F ++P     
Sbjct: 100 SLDEGRKLHSQILKLGLD---SNGCLSEKLFDFYLFK----GDLYGAFKVFDEMPERTIF 152

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM-QVHGL 142
             NK I+ ++  +       +F++M++E +T +  +F  +L+A        + + Q+H  
Sbjct: 153 TWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHAR 212

Query: 143 GTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202
               G      V   L+ +Y   G +  AR +FD +  +D   W  MI G  +N    E 
Sbjct: 213 ILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEA 272

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           + LF +M +  + P     S +LSAC +  +L  GE +H  ++    + D ++ + L+++
Sbjct: 273 IRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSL 332

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           Y + G               NL+                 A  IF  M ++D + ++ +I
Sbjct: 333 YFHLG---------------NLI----------------SAEHIFSNMSQRDAVTYNTLI 361

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
           +G ++  + ++A++LF  M + G++PD  T+ S++ AC+  G L + Q++H Y  K  F 
Sbjct: 362 NGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFA 421

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            + ++  A++++YAKC  +E+A + F      NV+ W  M+ A+ +  D RN+   F +M
Sbjct: 422 SNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM 481

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC--MVDLFGRA 500
           + E I PN  T+  +L  C   G ++ G +I + +        +   Y C  ++D++ + 
Sbjct: 482 QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII---KTNFQLNAYVCSVLIDMYAKL 538

Query: 501 NLLREALELVETMPFA-PNVVIWGSLMAA 528
             L  A +++  + FA  +VV W +++A 
Sbjct: 539 GKLDTAWDIL--IRFAGKDVVSWTTMIAG 565



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 161/409 (39%), Gaps = 88/409 (21%)

Query: 206 FEEMKMSNVE-----PDEMVLSKILSACSRA-GNLSYGEAVHEFIIDNNVALDAHLQSTL 259
           F+E ++ +VE     P+   L  +L  C +  G+L  G  +H  I+   + LD++     
Sbjct: 67  FQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQIL--KLGLDSN----- 119

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWS 319
                  GC+  ++ LFD  L K               G +  A  +FD+M E+ +  W+
Sbjct: 120 -------GCL--SEKLFDFYLFK---------------GDLYGAFKVFDEMPERTIFTWN 155

Query: 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV-LDQAQRIHLYIDK 378
            MI   A  N   E   LF  M    + P++ T   V+ AC    V  D  ++IH  I  
Sbjct: 156 KMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILY 215

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
                   V N +ID+Y++ G ++ AR VF+ +R ++  SW +MI+  + +     A+  
Sbjct: 216 QGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRL 275

Query: 439 FNKMKDESIDPNGVTFIGVLYACS-----------------------------------H 463
           F  M    I P    F  VL AC                                    H
Sbjct: 276 FCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFH 335

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM---PFAPNVV 520
            G +     IF++M+    +      Y  +++   +     +A+EL + M      P+  
Sbjct: 336 LGNLISAEHIFSNMSQRDAVT-----YNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSN 390

Query: 521 IWGSLMAACRVHGEI----ELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565
              SL+ AC   G +    +L  +  K     +   +GAL+   N+YAK
Sbjct: 391 TLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALL---NLYAK 436



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 4/144 (2%)

Query: 320 AMISGY-AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL-GVLDQAQRIHLYID 377
           A IS Y +E+   QE  K  + ++  G++P+  T+  ++  C    G LD+ +++H  I 
Sbjct: 55  AAISVYISEDESFQE--KRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQIL 112

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           K     +  ++  + D Y   G L  A +VF+ M  R + +W  MI   A          
Sbjct: 113 KLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFG 172

Query: 438 FFNKMKDESIDPNGVTFIGVLYAC 461
            F +M  E++ PN  TF GVL AC
Sbjct: 173 LFVRMVSENVTPNEGTFSGVLEAC 196


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/624 (37%), Positives = 363/624 (58%), Gaps = 37/624 (5%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A + F  M   G      +F  ++K+ A  + L     +H    K G  ++  V T L+ 
Sbjct: 288 AFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMV 347

Query: 161 MYGACGKILDARLMFDKM-SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
               C +I DA  +F  M   + +V W+ MI GY QNG  D+ +NLF  M+   V+P+  
Sbjct: 348 ALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHF 407

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
             S IL+      +  +   +H  +I  N                               
Sbjct: 408 TYSTILTV----QHAVFISEIHAEVIKTNYE----------------------------- 434

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
             K+  V TA++  + + G + DA  +F+ +  KD+I WSAM++GYA+    +EA K+F+
Sbjct: 435 --KSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFH 492

Query: 340 EMQVCGMKPDKVTMLSVISAC-AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           ++   G+KP++ T  S+I+AC A    ++Q ++ H Y  K      L V+++++ +YAK 
Sbjct: 493 QLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKR 552

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G++ESA E+F+R + R+++SW SMI+ +A HG A+ AL  F +M+  +++ + +TFIGV+
Sbjct: 553 GNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVI 612

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            AC+HAGLV +G+  F  M N+++I P  EHY CM+DL+ RA +L +A++++  MPF P 
Sbjct: 613 SACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPA 672

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
             +W  ++AA RVH  IEL + AA++++ L+P H  A VLLSNIYA    W +   +RK 
Sbjct: 673 ATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKL 732

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           M +R + KE   S IE+ N+ Y FL  D SH  +D IY KL+E+ + L+  GY PD +  
Sbjct: 733 MDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGYQPDTNYV 792

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
             D+EDE+K  ++  HSE+LA+ +GLI++  +  ++IVKNLRVC DCH+FIKLVS V  R
Sbjct: 793 FHDIEDEQKETILSHHSERLAIAFGLIATLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKR 852

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
            IV+RD  RFHH+K G+CSC DYW
Sbjct: 853 YIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/474 (25%), Positives = 220/474 (46%), Gaps = 51/474 (10%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  +   SW+       ++F  M  EG   D ++   ++ A+A    +  GMQ+H L  K
Sbjct: 172 NSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVK 231

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
           LGF ++  V   L+ M    G + DAR++FD M  +D V W+ MI G+  NG   E    
Sbjct: 232 LGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFET 291

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           F  M+++  +P     + ++ +C+    L     +H                        
Sbjct: 292 FNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLH------------------------ 327

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE-KDLICWSAMISG 324
             C  +  GL       N  V TA++   ++  +++DA  +F  M   + ++ W+AMISG
Sbjct: 328 --CKTLKSGLS-----TNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISG 380

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           Y +N    +A+ LF+ M+  G+KP+  T  S I    H   + +   IH  + K  +   
Sbjct: 381 YLQNGDTDQAVNLFSLMRREGVKPNHFTY-STILTVQHAVFISE---IHAEVIKTNYEKS 436

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
             V  A++D + K G++  A +VFE +  ++VI+W++M+  +A  G+   A   F+++  
Sbjct: 437 SSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTR 496

Query: 445 ESIDPNGVTFIGVLYACSH-AGLVDEGREIFASMTNEYNIPPKYEHYGC----MVDLFGR 499
           E I PN  TF  ++ AC+     V++G++  A     Y I  +  +  C    +V L+ +
Sbjct: 497 EGIKPNEFTFCSIINACTAPTASVEQGKQFHA-----YAIKLRLNNALCVSSSLVTLYAK 551

Query: 500 ANLLREALELVETMPFAPNVVIWGSLMAACRVHGE----IELAEFAAKQLLQLD 549
              +  A E+ +      ++V W S+++    HG+    +E+ E   K+ L++D
Sbjct: 552 RGNIESAHEIFKRQK-ERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVD 604



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 218/482 (45%), Gaps = 46/482 (9%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           +A  +F Q P    +  N+ +   S   + + AL +F+ +   GL+ D ++   +L   A
Sbjct: 54  FAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCA 113

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
            +     G QVH    K G      V   LV MY   G + D R +FD+M  RD+V W+ 
Sbjct: 114 GSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNS 173

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           ++ GY  N   D+V  LF  M++    PD   +S +++A +  G ++ G  +H  ++   
Sbjct: 174 LLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLG 233

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              +  + ++LI+M +  G +  A+ +FD +  K+ V   +M++G+   GQ         
Sbjct: 234 FETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQ--------- 284

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
                DL                 EA + FN MQ+ G KP   T  SVI +CA L  L  
Sbjct: 285 -----DL-----------------EAFETFNNMQLAGAKPTHATFASVIKSCASLKELGL 322

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-RNVISWTSMINAFA 427
            + +H    K+    +  V  A++    KC  ++ A  +F  M   ++V+SWT+MI+ + 
Sbjct: 323 VRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYL 382

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            +GD   A+  F+ M+ E + PN  T+  +L    HA        +F S  +   I   Y
Sbjct: 383 QNGDTDQAVNLFSLMRREGVKPNHFTYSTIL-TVQHA--------VFISEIHAEVIKTNY 433

Query: 488 EHYG----CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
           E        ++D F +   + +A+++ E +    +V+ W +++A     GE E A     
Sbjct: 434 EKSSSVGTALLDAFVKIGNISDAVKVFELIE-TKDVIAWSAMLAGYAQAGETEEAAKIFH 492

Query: 544 QL 545
           QL
Sbjct: 493 QL 494



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 180/387 (46%), Gaps = 40/387 (10%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           A+ +FD+   RD+   + ++  Y +     E L+LF  +  S + PD   +S +LS C+ 
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
           + N + GE VH                        C C+          L+ +L V  ++
Sbjct: 115 SFNGTVGEQVH------------------------CQCVKCG-------LVHHLSVGNSL 143

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           V  Y++ G V D R +FD+M ++D++ W+++++GY+ N    +  +LF  MQV G +PD 
Sbjct: 144 VDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDY 203

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
            T+ +VI+A A+ G +    +IH  + K  F  +  V N++I M +K G L  AR VF+ 
Sbjct: 204 YTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDN 263

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS---HAGLV 467
           M  ++ +SW SMI    I+G    A   FN M+     P   TF  V+ +C+     GLV
Sbjct: 264 MENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLV 323

Query: 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
                +    T +  +         ++    +   + +A  L   M    +VV W ++++
Sbjct: 324 ----RVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMIS 379

Query: 528 ACRVHGEIELAE--FAAKQLLQLDPDH 552
               +G+ + A   F+  +   + P+H
Sbjct: 380 GYLQNGDTDQAVNLFSLMRREGVKPNH 406



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 187/409 (45%), Gaps = 48/409 (11%)

Query: 9   KPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           KP     ++ I SC+SL  +   +  H + LK   S  +QN      +LT+  +  T   
Sbjct: 301 KPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLST-NQN------VLTALMVALTKCK 353

Query: 66  SLYYALSIFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
            +  A S+FS +    S VS    I     +     A+ +F  M  EG+  + F++  IL
Sbjct: 354 EIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL 413

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
             +  A  + E   +H    K  +     V T L+  +   G I DA  +F+ +  +D++
Sbjct: 414 -TVQHAVFISE---IHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVI 469

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEF 243
            WS M+ GY Q G  +E   +F ++    ++P+E     I++AC+    ++  G+  H +
Sbjct: 470 AWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAY 529

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
            I   +     + S+L+T+YA  G ++ A  +F +   ++LV   +M+SGY++ GQ + A
Sbjct: 530 AIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKA 589

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
                                          L++F EMQ   ++ D +T + VISACAH 
Sbjct: 590 -------------------------------LEVFEEMQKRNLEVDAITFIGVISACAHA 618

Query: 364 GVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           G++ + Q   ++ I+ +     +   + +ID+Y++ G L  A ++   M
Sbjct: 619 GLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGM 667


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/620 (37%), Positives = 356/620 (57%), Gaps = 50/620 (8%)

Query: 152 PFVQTGLVGMYGACGKILDARLMFDKMSYRDI----VPWS----VMIDGYFQNGLFDEVL 203
           P     L+ +Y   G +  AR +FD   +        P S     M+  Y   G   E +
Sbjct: 58  PHFLARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAI 117

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
           +L+  M+   V  +      +L  C+      +GE VH  ++      D  +++ L+ MY
Sbjct: 118 DLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMY 177

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA-------------------------- 297
           A CG +  A  +FD++L++++V  TAM++ Y +A                          
Sbjct: 178 AKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAI 237

Query: 298 ------GQVED-------ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
                 GQ+ D       ARL+FD+M E++ I W++M+SGY +N  P +AL LFN+MQ  
Sbjct: 238 SVASAVGQLGDGRMAISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQAS 297

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
              P+ VT L ++SAC++LG     +++H ++  +    D  + NAI+DMY KCG L++A
Sbjct: 298 ECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTA 357

Query: 405 REVFE--RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            E+F    +  R+V SW  +I+ + +HG  + AL  F++M+ E ++PN +TF  +L ACS
Sbjct: 358 VEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACS 417

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
           HAGL+DEGR+ FA MT + ++ P+ +HY CMVD+ GRA  L EA  L++ +P  P+  +W
Sbjct: 418 HAGLIDEGRKCFADMT-KLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVW 476

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582
           G+L+ ACR+HG  EL E AA  L QL+P+H G  VL+SNIYA   +W++V  +R++MK R
Sbjct: 477 GALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSR 536

Query: 583 GILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDL 642
           G+ K  A S IE   EV+ F TAD+S     ++Y K+  +  E+K  GYVPD+   L D+
Sbjct: 537 GLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDV 596

Query: 643 EDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVI 702
           E E+K  ++ +HSEKLA+ +G++   +   I++ KNLRVC DCH   K +S +Y R+I++
Sbjct: 597 EPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIV 656

Query: 703 RDRTRFHHYKDGVCSCKDYW 722
           RD  RFHH++ G CSC DYW
Sbjct: 657 RDGNRFHHFQGGRCSCGDYW 676



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 229/488 (46%), Gaps = 49/488 (10%)

Query: 4   LSQPTKPLTLPT-----STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFS 58
           LS   K L LP+        +  C+SLT +K  H+ +       H+ + L   ++L S  
Sbjct: 12  LSHTHKVLALPSLHHFYDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKL 71

Query: 59  LPTTTPSSLY--YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTID 116
               +  +L+            AP S + N  +RA + + R   A+ +++ M   G+ ++
Sbjct: 72  GDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVN 131

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
            F++P +LK  A   G + G  VHG   + GFGSD FV+  LV MY  CG+I DA  +FD
Sbjct: 132 NFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFD 191

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
           +M  RD+V W+ MI  Y Q     + L LF +M+      DE+    + SA  + G+   
Sbjct: 192 RMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRM 251

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL---------------- 280
             +    + D     +    +++++ Y   G    A  LF+++                 
Sbjct: 252 AISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVS 311

Query: 281 -------------LKNLVVST----------AMVSGYSRAGQVEDARLIFD--QMVEKDL 315
                        L N V+S+          A++  Y + G ++ A  +F+  ++ E+D+
Sbjct: 312 ACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDV 371

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
             W+ +ISGY  + H +EAL+LF+ MQV G++P+ +T  S++SAC+H G++D+ ++    
Sbjct: 372 SSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFAD 431

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIHGDARN 434
           + K +   +++    ++DM  + G L  A  + +++  R     W +++ A  IHG+   
Sbjct: 432 MTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTEL 491

Query: 435 ALIFFNKM 442
             I  N +
Sbjct: 492 GEIAANNL 499


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/628 (38%), Positives = 355/628 (56%), Gaps = 45/628 (7%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + A+++FL  L +G   DR++   ++ A      +  G+Q+H L  ++GF SD  V  GL
Sbjct: 236 EEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGL 295

Query: 159 VGMYGACG--KILD-ARLMFDKMSYRDIVPWSVMIDGYFQNGLFD-EVLNLFEEMKMSNV 214
           V MY      + +D A  +F++M   D++ W+ +I GY Q+G+ + +V+ LF EM   ++
Sbjct: 296 VDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESI 355

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
           +P+ +  S IL AC+   +   G  VH  +I +N A  AH                    
Sbjct: 356 KPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAA-AH-------------------- 394

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
                      V  A+VS Y+ +G +E+AR +F+Q+ E+      +MIS   E       
Sbjct: 395 ----------TVGNALVSMYAESGCMEEARRVFNQLYER------SMISCITEGRDA--- 435

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
             L + +    M     T  S+ISA A +G+L + Q++H    K  FG D  V+N+++ M
Sbjct: 436 -PLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSM 494

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y++CG LE A   F  ++ RNVISWTSMI+  A HG A  AL  F+ M    + PN VT+
Sbjct: 495 YSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTY 554

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           I VL ACSH GLV EG+E F SM  ++ + P+ EHY CMVDL  R+ L++EALE +  MP
Sbjct: 555 IAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMP 614

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
              + ++W +L+ ACR H  IE+ E AAK +++L+P      VLLSN+YA    W +V  
Sbjct: 615 LKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVAR 674

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           +R +M++  + KE   S +E+ N  +EF   D SH +   IY KL+ ++ E+K  GYVPD
Sbjct: 675 IRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVPD 734

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
               L D+ DE K + +L HSEK+A+ +GLI++     IRI KNLRVC DCH+ IK +SK
Sbjct: 735 TSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSK 794

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              REI++RD  RFH  KDG CSC +YW
Sbjct: 795 ATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 175/361 (48%), Gaps = 35/361 (9%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKM-SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
           D  V   L+ +Y  CG +  AR +FD M   RDIV W+ M     +NG   E L L  EM
Sbjct: 83  DAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEM 142

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
             S + P+   L  +  AC            HE        +   +              
Sbjct: 143 LESGLLPNAYTLCAVAHAC----------FPHELYCLVGGVVLGLVHKM----------- 181

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
               GL+      ++ V +A++   +R G +  AR +FD ++EK ++ W+ +IS Y +  
Sbjct: 182 ----GLWGT----DIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGE 233

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389
             +EA+++F +    G +PD+ TM S+ISAC  LG +    ++H    +  F  D  V+ 
Sbjct: 234 CAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSC 293

Query: 390 AIIDMYAKCG---SLESAREVFERMRRRNVISWTSMINAFAIHGDARN-ALIFFNKMKDE 445
            ++DMYAK     +++ A +VFERMR+ +VISWT++I+ +   G   N  ++ F +M +E
Sbjct: 294 GLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNE 353

Query: 446 SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505
           SI PN +T+  +L AC++    D GR++ A +    N    +     +V ++  +  + E
Sbjct: 354 SIKPNHITYSSILKACANISDHDSGRQVHAHVIKS-NQAAAHTVGNALVSMYAESGCMEE 412

Query: 506 A 506
           A
Sbjct: 413 A 413



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 143/306 (46%), Gaps = 40/306 (13%)

Query: 230 RAGNLSYGEAVHEFIIDNNVA-LDAHLQSTLITMYANCGCMDMAKGLFDKVL-LKNLVVS 287
           RAG+L  G A+H  ++  ++   DA + ++L+T+Y+ CG +  A+ +FD +  L+++V  
Sbjct: 60  RAGDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSW 119

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           TAM S  +R G                                 +E+L L  EM   G+ 
Sbjct: 120 TAMASCLARNGA-------------------------------ERESLLLIGEMLESGLL 148

Query: 348 PDKVTMLSVISAC--AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
           P+  T+ +V  AC    L  L     + L      +G D+ V +A+IDM A+ G L SAR
Sbjct: 149 PNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASAR 208

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
           +VF+ +  + V+ WT +I+ +     A  A+  F    ++  +P+  T   ++ AC+  G
Sbjct: 209 KVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELG 268

Query: 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL---LREALELVETMPFAPNVVIW 522
            V  G ++  S+               +VD++ ++N+   +  A ++ E M    +V+ W
Sbjct: 269 SVRLGLQLH-SLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMR-KNDVISW 326

Query: 523 GSLMAA 528
            +L++ 
Sbjct: 327 TALISG 332


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/715 (33%), Positives = 391/715 (54%), Gaps = 52/715 (7%)

Query: 18  AISSCSSLTHMKQT---HAQILKLSHSHHSQNSLLLK---LLLTSFSLPTTTPSSLYYAL 71
           AI  CSS   +KQ    HA IL+         + LL+   +L T+          L  A 
Sbjct: 64  AIGVCSSSKDLKQGQLLHAMILE---------TQLLEFDIILGTALITMYARCRDLELAR 114

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLN---EGLTIDRFSFPPILKAIA 128
             F ++        N  I   S +   + ALK++  M++   EG+  D  +F   L A +
Sbjct: 115 KTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACS 174

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
               + +G ++       G+ SD  VQ  L+ MY  CG +  AR +FD++  RD++ W+ 
Sbjct: 175 VVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNT 234

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI GY + G   + L LF+ M  ++ +P+ +    +L+AC+   +L  G A+H  + ++ 
Sbjct: 235 MISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHG 294

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D  + + L+ MY  C                              +  +E+AR +F+
Sbjct: 295 YESDLVIGNVLLNMYTKC------------------------------SSSLEEARQVFE 324

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           ++  +D+I W+ +I  Y +    ++AL +F +MQ+  + P+++T+ +V+SACA LG   Q
Sbjct: 325 RLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQ 384

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            + +H  I       D+ + N++++MY +CGSL+    VF  +R ++++SW+++I A+A 
Sbjct: 385 GKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQ 444

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG +R  L  F ++  E +  + VT +  L ACSH G++ EG + F SM  ++ + P Y 
Sbjct: 445 HGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYR 504

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           H+ CMVDL  RA  L  A  L+  MPF P+ V W SL++ C++H + + A   A +L +L
Sbjct: 505 HFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFEL 564

Query: 549 DP-DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
           +  D    + LLSN+YA+  RW DV   RK+   R   K   CS IE+N+ V+EF+  D+
Sbjct: 565 ESEDEHSTVTLLSNVYAEAGRWDDV---RKTRNRRAARKNPGCSYIEINDTVHEFVAGDK 621

Query: 608 SHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS 667
           SH + + I  ++  +  ++K AGYVPD+   L ++++EEK +++ +HSEKLA+ YGLIS+
Sbjct: 622 SHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLIST 681

Query: 668 KKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              + + IVKNLR C DCH   K +S++  R+IV+RD TRFHH+++G CSCKDYW
Sbjct: 682 PPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/406 (30%), Positives = 211/406 (51%), Gaps = 38/406 (9%)

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MYG CG + DA  +F  + + + V W++++  + +NG + E L  +  M +  + PD  +
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNN-VALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
               +  CS + +L  G+ +H  I++   +  D  L + LITMYA C  +++A+  FD++
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
             K LV   A+++GYSR G    A  I+  MV K                 P+       
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKS----------------PE------- 157

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
                GMKPD +T  S + AC+ +G + Q + I      + +  D  V NA+I+MY+KCG
Sbjct: 158 -----GMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCG 212

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           SLESAR+VF+R++ R+VI+W +MI+ +A  G A  AL  F +M      PN VTFIG+L 
Sbjct: 213 SLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLT 272

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR-ANLLREALELVETMPFAPN 518
           AC++   +++GR I   +  E+           +++++ + ++ L EA ++ E +    +
Sbjct: 273 ACTNLEDLEQGRAIHRKV-KEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLR-TRD 330

Query: 519 VVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALVLLSNI 562
           V+ W  L+ A   +G+ +  L  F   QL  + P+     + LSN+
Sbjct: 331 VITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNE----ITLSNV 372



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 224/469 (47%), Gaps = 42/469 (8%)

Query: 9   KPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY 68
           KP  +  S+A+ +CS +  + Q      +   S ++ +S++   L+  +S       SL 
Sbjct: 160 KPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYS----KCGSLE 215

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
            A  +F ++        N  I   +       AL++F +M       +  +F  +L A  
Sbjct: 216 SARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACT 275

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL-DARLMFDKMSYRDIVPWS 187
             E L +G  +H    + G+ SD  +   L+ MY  C   L +AR +F+++  RD++ W+
Sbjct: 276 NLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWN 335

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
           ++I  Y Q G   + L++F++M++ NV P+E+ LS +LSAC+  G    G+AVH  I   
Sbjct: 336 ILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASG 395

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
               D  L+++L+ MY  CG +D   G+F  +  K+LV                      
Sbjct: 396 RCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLV---------------------- 433

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
                     WS +I+ YA++ H +  L+ F E+   G+  D VTM+S +SAC+H G+L 
Sbjct: 434 ---------SWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLK 484

Query: 368 QA-QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINA 425
           +  Q     +  +    D R    ++D+ ++ G LE+A  +   M    + ++WTS+++ 
Sbjct: 485 EGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSG 544

Query: 426 FAIHGDARNALIFFNKMKD-ESIDPNG-VTFIGVLYACSHAGLVDEGRE 472
             +H D + A    +K+ + ES D +  VT +  +YA   AG  D+ R+
Sbjct: 545 CKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYA--EAGRWDDVRK 591



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 18/172 (10%)

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
           MY KCGS+  A  VF  +   N +SWT ++ AFA +G  R AL ++ +M  E + P+G  
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
           F+  +  CS +  + +G+ + A +     +         ++ ++ R   L  A +  + M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 514 PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565
                +V W +L+A    +G                 DH GAL +  ++ +K
Sbjct: 121 G-KKTLVTWNALIAGYSRNG-----------------DHRGALKIYQDMVSK 154


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/718 (34%), Positives = 383/718 (53%), Gaps = 40/718 (5%)

Query: 6    QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQ-NSLLLKLLLTSFSLPTTTP 64
            +P          A S+  +L   +Q HA   KL  + +++    LL L      + T   
Sbjct: 346  EPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIET--- 402

Query: 65   SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
                 AL  F +       + N  + A       +++ ++F +M  E +  +++++P IL
Sbjct: 403  -----ALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSIL 457

Query: 125  KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            K   R   L  G Q+H    K  F  + +V + L+ MY   GK+  A  +  + + +D+V
Sbjct: 458  KTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVV 517

Query: 185  PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
             W+ MI GY Q    D+ L  F +M    +  DE+ L+  +SAC+    L  G+ +H   
Sbjct: 518  SWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQA 577

Query: 245  IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
              +  + D   Q+ L+T+Y                               SR G++E++ 
Sbjct: 578  CVSGFSSDLPFQNALVTLY-------------------------------SRCGKIEESY 606

Query: 305  LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            L F+Q    D I W+A++SG+ ++ + +EAL++F  M   G+  +  T  S + A +   
Sbjct: 607  LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETA 666

Query: 365  VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
             + Q +++H  I K  +  +  V NA+I MYAKCGS+  A + F  +  +N +SW ++IN
Sbjct: 667  NMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIIN 726

Query: 425  AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
            A++ HG    AL  F++M   ++ PN VT +GVL ACSH GLVD+G   F SM +EY + 
Sbjct: 727  AYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLS 786

Query: 485  PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
            PK EHY C+VD+  RA LL  A E ++ MP  P+ ++W +L++AC VH  +E+ EFAA  
Sbjct: 787  PKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHH 846

Query: 545  LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
            LL+L+P+     VLLSN+YA  K+W      R+ MKE+G+ KE   S IE+ N ++ F  
Sbjct: 847  LLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYV 906

Query: 605  ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
             D++H   D+I+E   ++       GYV D  S L +L+ E+K  +I  HSEKLA+ +GL
Sbjct: 907  GDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGL 966

Query: 665  ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            +S      I ++KNLRVC DCH +IK VSKV  REI++RD  RFHH++ G CSCKDYW
Sbjct: 967  LSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 141/530 (26%), Positives = 246/530 (46%), Gaps = 49/530 (9%)

Query: 10  PLTLPTSTAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P     S+ +S+C  +  ++   Q H  +LKL  S  S   +   L+   F L      +
Sbjct: 246 PTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS--SDTYVCNALVSLYFHL-----GN 298

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L  A  IFS +    +   N  I  +S     + A+++F +M  +GL  D  +   ++ A
Sbjct: 299 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVA 358

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            +    L  G Q+H   TKLGF S+  ++  L+ +Y  C  I  A   F +    ++V W
Sbjct: 359 CSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLW 418

Query: 187 SVMIDGYFQNGLFDEVLN---LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           +VM+  Y   GL D++ N   +F +M++  + P++     IL  C R G+L  GE +H  
Sbjct: 419 NVMLVAY---GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQ 475

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           II  N  L+A++ S LI MYA  G +D A  +  +   K++V  T M++GY+        
Sbjct: 476 IIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT-------- 527

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
                                  + N   +AL  F +M   G++ D+V + + +SACA L
Sbjct: 528 -----------------------QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGL 564

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
             L + Q+IH     + F  DL   NA++ +Y++CG +E +   FE+    + I+W +++
Sbjct: 565 QALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALV 624

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
           + F   G+   AL  F +M  E ID N  TF   + A S    + +G+++ A +T +   
Sbjct: 625 SGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVIT-KTGY 683

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
             + E    ++ ++ +   + +A +    +    N V W +++ A   HG
Sbjct: 684 DSETEVCNALISMYAKCGSISDAEKQFLEVS-TKNEVSWNAIINAYSKHG 732



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/509 (24%), Positives = 240/509 (47%), Gaps = 47/509 (9%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83
           SL   ++ H+QILKL       N  L + L   +         LY A  +F ++P     
Sbjct: 60  SLDEGRKLHSQILKLGLD---SNGCLSEKLFDFYLFK----GDLYGAFKVFDEMPERTIF 112

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM-QVHGL 142
             NK I+ ++  +       +F++M++E +T +  +F  +L+A        + + Q+H  
Sbjct: 113 TWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHAR 172

Query: 143 GTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202
               G      V   L+ +Y   G +  AR +FD +  +D   W  MI G  +N    E 
Sbjct: 173 ILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEA 232

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           + LF +M +  + P     S +LSAC +  +L  GE +H  ++    + D ++ + L+++
Sbjct: 233 IRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSL 292

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           Y + G               NL+                 A  IF  M ++D + ++ +I
Sbjct: 293 YFHLG---------------NLI----------------SAEHIFSNMSQRDAVTYNTLI 321

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
           +G ++  + ++A++LF  M + G++PD  T+ S++ AC+  G L + Q++H Y  K  F 
Sbjct: 322 NGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFA 381

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            + ++  A++++YAKC  +E+A + F      NV+ W  M+ A+ +  D RN+   F +M
Sbjct: 382 SNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM 441

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC--MVDLFGRA 500
           + E I PN  T+  +L  C   G ++ G +I + +        +   Y C  ++D++ + 
Sbjct: 442 QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII---KTNFQLNAYVCSVLIDMYAKL 498

Query: 501 NLLREALELVETMPFA-PNVVIWGSLMAA 528
             L  A +++  + FA  +VV W +++A 
Sbjct: 499 GKLDTAWDIL--IRFAGKDVVSWTTMIAG 525



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 161/409 (39%), Gaps = 88/409 (21%)

Query: 206 FEEMKMSNVE-----PDEMVLSKILSACSRA-GNLSYGEAVHEFIIDNNVALDAHLQSTL 259
           F+E ++ +VE     P+   L  +L  C +  G+L  G  +H  I+   + LD++     
Sbjct: 27  FQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQIL--KLGLDSN----- 79

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWS 319
                  GC+  ++ LFD  L K               G +  A  +FD+M E+ +  W+
Sbjct: 80  -------GCL--SEKLFDFYLFK---------------GDLYGAFKVFDEMPERTIFTWN 115

Query: 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV-LDQAQRIHLYIDK 378
            MI   A  N   E   LF  M    + P++ T   V+ AC    V  D  ++IH  I  
Sbjct: 116 KMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILY 175

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
                   V N +ID+Y++ G ++ AR VF+ +R ++  SW +MI+  + +     A+  
Sbjct: 176 QGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRL 235

Query: 439 FNKMKDESIDPNGVTFIGVLYACS-----------------------------------H 463
           F  M    I P    F  VL AC                                    H
Sbjct: 236 FCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFH 295

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM---PFAPNVV 520
            G +     IF++M+    +      Y  +++   +     +A+EL + M      P+  
Sbjct: 296 LGNLISAEHIFSNMSQRDAVT-----YNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSN 350

Query: 521 IWGSLMAACRVHGEI----ELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565
              SL+ AC   G +    +L  +  K     +   +GAL+   N+YAK
Sbjct: 351 TLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALL---NLYAK 396



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 4/144 (2%)

Query: 320 AMISGY-AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL-GVLDQAQRIHLYID 377
           A IS Y +E+   QE  K  + ++  G++P+  T+  ++  C    G LD+ +++H  I 
Sbjct: 15  AAISVYISEDESFQE--KRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQIL 72

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           K     +  ++  + D Y   G L  A +VF+ M  R + +W  MI   A          
Sbjct: 73  KLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFG 132

Query: 438 FFNKMKDESIDPNGVTFIGVLYAC 461
            F +M  E++ PN  TF GVL AC
Sbjct: 133 LFVRMVSENVTPNEGTFSGVLEAC 156


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/622 (38%), Positives = 352/622 (56%), Gaps = 44/622 (7%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           + ++F +M  EG+  ++F++P ILK          G Q+H    K GF  + +V + L+ 
Sbjct: 422 SFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLID 481

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY   GK+  A  +F ++   D+V W+ MI GY Q+  F E LNLF+EM+   ++ D + 
Sbjct: 482 MYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIG 541

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
            +  +SAC+    L  G  +H              QS L              G  D   
Sbjct: 542 FASAISACAGIQALDQGRQIHA-------------QSCL-------------SGYSD--- 572

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
             +L +  A+VS Y+R G+V +A   FDQ+  KD + W++++SG+A++ + +EAL +F +
Sbjct: 573 --DLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQ 630

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M   G++ +  T  S +SA A++  +   ++IH  I K  +  +  V+NA+I +YAKCG+
Sbjct: 631 MNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGT 690

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           ++              ISW SMI  ++ HG    AL  F  MK   + PN VTF+GVL A
Sbjct: 691 IDD-------------ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSA 737

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSH GLVDEG   F SM+  +N+ PK EHY C+VDL GR+ LL  A   VE MP  P+ +
Sbjct: 738 CSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAM 797

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           +W +L++AC VH  I++ EFAA  LL+L+P      VL+SN+YA   +W      R+ MK
Sbjct: 798 VWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMK 857

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           +RG+ KE   S +E++N V+ F   D++H + D IYE L  +       GYVP  +S L 
Sbjct: 858 DRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLS 917

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D E  +K    + HSE+LA+ +GL+S    + + + KNLRVCEDCHN+IK VSK+  R I
Sbjct: 918 DAEIRQKDPTEIIHSERLAIAFGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVI 977

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           ++RD  RFHH+K G CSCKDYW
Sbjct: 978 IVRDSYRFHHFKVGSCSCKDYW 999



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 199/417 (47%), Gaps = 50/417 (11%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +L A  + E    G Q+HGL  K GF S+ +V   LV +Y   G +  A  +F  MS RD
Sbjct: 257 VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRD 316

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
            V ++ +I G  Q G  +  L LF++M +   +PD + ++ +LSAC+  G L  G+  H 
Sbjct: 317 RVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHS 376

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           + I   +  D  ++ +L+ +Y  C  +  A   F                          
Sbjct: 377 YAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF-------------------------- 410

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
                        +C       Y + ++  ++ ++F +MQ+ G+ P++ T  S++  C  
Sbjct: 411 -------------LC-------YGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTT 450

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           LG  D  ++IH  + K  F  ++ V++ +IDMYAK G L+ A ++F R++  +V+SWT+M
Sbjct: 451 LGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAM 510

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA-SMTNEY 481
           I  +  H     AL  F +M+D+ I  + + F   + AC+    +D+GR+I A S  + Y
Sbjct: 511 IAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGY 570

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
           +      +   +V L+ R   +REA    + + +A + V W SL++     G  E A
Sbjct: 571 SDDLSIGN--ALVSLYARCGKVREAYAAFDQI-YAKDNVSWNSLVSGFAQSGYFEEA 624



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 121/501 (24%), Positives = 213/501 (42%), Gaps = 89/501 (17%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+  Y A G +  A  +FD+M  R +  W+ + + +    L   V  LF  M   NVE D
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 218 EMVLSKILSACS-RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           E + + +L  CS  A +  + E +H   I +       + + LI +Y   G +  AK +F
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           + +  ++ V   AM+SG S+ G  E+A L+F Q+                          
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI-------------------------- 256

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
                              V+SAC  +   +  +++H  + K  F  +  V NA++ +Y+
Sbjct: 257 -------------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYS 297

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           + G+L SA ++F  M +R+ +S+ S+I+  A  G    AL  F KM  +   P+ VT   
Sbjct: 298 RSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVAS 357

Query: 457 VLYACSHAGLVDEGRE-----IFASMTNEY--------------NIPPKYEHYGCMVDLF 497
           +L AC+  G +  G++     I A MT++               +I   +E + C    +
Sbjct: 358 LLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLC----Y 413

Query: 498 GRANLLREALELVETMP---FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           G+ + L ++ ++   M      PN   + S++  C   G  +L E    Q+L+     + 
Sbjct: 414 GQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNV 473

Query: 555 AL-VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTD 613
            +  +L ++YAK       G+L  ++K    LKE         N+V  +      + Q D
Sbjct: 474 YVSSVLIDMYAKH------GKLDHALKIFRRLKE---------NDVVSWTAMIAGYTQHD 518

Query: 614 QIYEKLNEVISELKPAGYVPD 634
           +  E LN +  E++  G   D
Sbjct: 519 KFTEALN-LFKEMQDQGIKSD 538



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 106/235 (45%), Gaps = 23/235 (9%)

Query: 6   QPTKPLTLPTSTAISSCS---SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT 62
           Q  K   +  ++AIS+C+   +L   +Q HAQ     +S    + L +   L S      
Sbjct: 533 QGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYS----DDLSIGNALVSLYARCG 588

Query: 63  TPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
                Y A   F QI A  +   N  +   + S   + AL +F +M   GL I+ F+F  
Sbjct: 589 KVREAYAA---FDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGS 645

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
            + A A    +  G Q+HG+  K G+ S+  V   L+ +Y  CG I             D
Sbjct: 646 AVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTI-------------D 692

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
            + W+ MI GY Q+G   E L LFE+MK  +V P+ +    +LSACS  G +  G
Sbjct: 693 DISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEG 747


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/574 (38%), Positives = 343/574 (59%), Gaps = 3/574 (0%)

Query: 151 DPFVQT--GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
           +P V +   L+  Y   G + +A+ +FDKM +R+ + W+ MI GY QNG  +E L L +E
Sbjct: 350 EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQE 409

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           +  S + P    L+ I  ACS    L  G  VH   +      ++   + LITMY  C  
Sbjct: 410 LHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRN 469

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           M+ A+ +F +++ K++V   + ++   +   +++AR  FD M+ +D + W+ +IS YA  
Sbjct: 470 MEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHA 529

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
               EA+  F  M      P+   +  ++  C  LG     Q+IH    K     +L V 
Sbjct: 530 EQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVA 589

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           NA+I MY KCG  +S R +F+ M  R++ +W ++I  +A HG  R A+  +  M+   + 
Sbjct: 590 NALISMYFKCGCADS-RRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVL 648

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
           PN VTF+G+L ACSHAGLVDEG + F SM+ +Y + P  EHY CMVDL GR   ++ A +
Sbjct: 649 PNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQ 708

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
            +  MP  P+ VIW +L+ AC++H   E+ + AA++L +++P + G  V+LSNIY+    
Sbjct: 709 FIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGM 768

Query: 569 WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
           W +V E+RK MK++G++KE  CS  ++ ++++ F+T D+ H+Q ++I   L E+ + LK 
Sbjct: 769 WGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKA 828

Query: 629 AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
            GYVPD    L D+++E+K   +L+HSEKLA+ Y L+++ K   I+I+KNLR+C DCH F
Sbjct: 829 TGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTF 888

Query: 689 IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           IK VS V  R+I IRD  RFHH+++G CSC+D+W
Sbjct: 889 IKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 194/379 (51%), Gaps = 23/379 (6%)

Query: 163 GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
           G  G++ +AR +FD M  RDI+ W+ MI  Y  NG+ D   +L++ +   N+    +   
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAI--- 101

Query: 223 KILSACSRAGNLSYGEAVHEFIID-NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
            +LS   R G +     V + +++ N VA +A     +I+ Y   G + MA+ LFD +  
Sbjct: 102 -LLSGYGRLGRVLEARRVFDGMLERNTVAWNA-----MISCYVQNGDITMARRLFDAMPS 155

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           +++    +M++GY  + Q+ DAR +F++M E++L+ W+ MISGY    +  +A  +F +M
Sbjct: 156 RDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKM 215

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS- 400
              G+ PD+    S +SA   LG LD  + + +   K  F  D+ +  AI+++Y++  S 
Sbjct: 216 HREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSV 275

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           L++A + FE M  RN  +W++MI A +  G    A+  + +   +SI        G+   
Sbjct: 276 LDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGL--- 332

Query: 461 CSHAGLVDEGREIFASMTNEYNIP-PKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
            +  G +D+ R +F        IP P    +  ++  + +  ++ EA EL + MPF  N 
Sbjct: 333 -AQCGRIDDARILFE------QIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPF-RNT 384

Query: 520 VIWGSLMAACRVHGEIELA 538
           + W  ++A    +G  E A
Sbjct: 385 ISWAGMIAGYAQNGRSEEA 403



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 187/389 (48%), Gaps = 52/389 (13%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL--LEGMQVHGLGTKLGFGSDPFVQTGL 158
           A  +F KM  EGL  D+ +F   L A+     L  LE ++V  L  K GF  D  + T +
Sbjct: 208 AWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRV--LALKTGFERDVVIGTAI 265

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + +Y     +LD  + F                              FE M    +E +E
Sbjct: 266 LNVYSRDTSVLDTAIKF------------------------------FESM----IERNE 291

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
              S +++A S  G +    AV+E     ++A     ++ LIT  A CG +D A+ LF++
Sbjct: 292 YTWSTMIAALSHGGRIDAAIAVYERDPVKSIAC----RTALITGLAQCGRIDDARILFEQ 347

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +    +V   A+++GY + G V +A+ +FD+M  ++ I W+ MI+GYA+N   +EAL L 
Sbjct: 348 IPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLL 407

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            E+   GM P   ++ S+  AC+++  L+   ++H    K     +    NA+I MY KC
Sbjct: 408 QELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKC 467

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFA---IHGDARNALIFFNKMKDESIDPNGVTFI 455
            ++E AR+VF RM  ++++SW S + A     +  +ARN         D  +  + V++ 
Sbjct: 468 RNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTF-------DNMLSRDDVSWT 520

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIP 484
            ++ A +HA   +E    F +M  E+ +P
Sbjct: 521 TIISAYAHAEQSNEAMGAFKTMFCEHELP 549



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 171/396 (43%), Gaps = 65/396 (16%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P   +      I   + + R + AL +  ++   G+     S   I  A + 
Sbjct: 372 AKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSN 431

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G QVH L  K+G   + F    L+ MYG C  +  AR +F +M  +DIV W+  
Sbjct: 432 IVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSF 491

Query: 190 IDGYFQNGLFDEVLNLFEEM------------------KMSNVE-------------PDE 218
           +    QN L DE  N F+ M                  + SN               P+ 
Sbjct: 492 LAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNS 551

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
            +L+ +L  C   G    G+ +H   I   +  +  + + LI+MY  CGC D ++ +FD 
Sbjct: 552 PILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDL 610

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +  +++     +++GY++ G                                 +EA+K++
Sbjct: 611 MEERDIFTWNTIITGYAQHGL-------------------------------GREAIKMY 639

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA-IIDMYAK 397
             M+  G+ P++VT + +++AC+H G++D+  +    + ++     L  + A ++D+  +
Sbjct: 640 QHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGR 699

Query: 398 CGSLESARE-VFERMRRRNVISWTSMINAFAIHGDA 432
            G ++ A + +++     + + W++++ A  IH +A
Sbjct: 700 TGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNA 735



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 115/249 (46%), Gaps = 30/249 (12%)

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           +A +    R G+V +AR +FD M  +D+I W++MIS Y  N  P  A  L++ +    M+
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN----NAIIDMYAKCGSLES 403
              +    ++S    LG + +A+R+        F G L  N    NA+I  Y + G +  
Sbjct: 98  TGAI----LLSGYGRLGRVLEARRV--------FDGMLERNTVAWNAMISCYVQNGDITM 145

Query: 404 AREVFERMRRRNVISWTSMINAFAIHG----DARNALIFFNKMKDESIDPNGVTFIGVLY 459
           AR +F+ M  R+V SW SM+  +  H     DARN    F KM + ++    V   G   
Sbjct: 146 ARRLFDAMPSRDVSSWNSMLTGYC-HSLQMVDARN---LFEKMPERNLVSWTVMISGYGR 201

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL-LREALELVE-TMPFAP 517
             +H    D    IF  M  E  +P +      +  + G  NL + E+L ++     F  
Sbjct: 202 IENHGKAWD----IFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFER 257

Query: 518 NVVIWGSLM 526
           +VVI  +++
Sbjct: 258 DVVIGTAIL 266


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/610 (38%), Positives = 350/610 (57%), Gaps = 37/610 (6%)

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +F  ++ + A+   L +G+ VH      GF  DPF+ T L+ MY   G I  AR +FD+ 
Sbjct: 80  TFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDET 139

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS----RAGNL 234
             R I  W+ +       G   E+L+L+ +M    +  D    + +L AC         L
Sbjct: 140 RERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPL 199

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             G+ +H  I+ +    + H+ +TL+ +YA  G +  A  +F  +  KN V         
Sbjct: 200 QKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFV--------- 250

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK--PDKVT 352
                                  WSAMI+ +A+N  P +AL+LF  M +      P+ VT
Sbjct: 251 ----------------------SWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVT 288

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           M++V+ ACA L  L+Q + IH YI +      L V NA+I MY +CG +   + VF+ M+
Sbjct: 289 MVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMK 348

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
            R+V+SW S+I+ + +HG  + A+  F  M  +   P+ ++FI VL ACSHAGLV+EG+ 
Sbjct: 349 NRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKI 408

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
           +F SM ++Y I P  EHY CMVDL GRAN L EA++L+E M F P   +WGSL+ +CR+H
Sbjct: 409 LFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIH 468

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
             +ELAE A+  L +L+P + G  VLL++IYA+ K W +   + K ++ RG+ K   CS 
Sbjct: 469 CNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSW 528

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652
           IE+  +VY F++ D  + Q ++I+  L ++ +E+K  GYVP  +  L DL++EEK  ++L
Sbjct: 529 IEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVL 588

Query: 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712
            HSEKLA+ +GLI++ K   IRI KNLR+CEDCH   K +SK   REI++RD  RFHH+K
Sbjct: 589 GHSEKLAVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFK 648

Query: 713 DGVCSCKDYW 722
           DGVCSC DYW
Sbjct: 649 DGVCSCGDYW 658



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 145/324 (44%), Gaps = 39/324 (12%)

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           P +     ++ +C++  +LS G  VH  ++ +    D  L + LI MY   G +D A+  
Sbjct: 76  PTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARK- 134

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
                                         +FD+  E+ +  W+A+    A     +E L
Sbjct: 135 ------------------------------VFDETRERTIYVWNALFRALAMVGCGKELL 164

Query: 336 KLFNEMQVCGMKPDKVTMLSVISAC--AHLGV--LDQAQRIHLYIDKNAFGGDLRVNNAI 391
            L+ +M   G+  D+ T   V+ AC  + L V  L + + IH +I ++ +  ++ V   +
Sbjct: 165 DLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTL 224

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID--P 449
           +D+YAK GS+  A  VF  M  +N +SW++MI  FA +     AL  F  M  E+ D  P
Sbjct: 225 LDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVP 284

Query: 450 NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
           N VT + VL AC+    +++G+ I   +     +         ++ ++GR   +     +
Sbjct: 285 NSVTMVNVLQACAGLAALEQGKLIHGYILRR-GLDSILPVLNALITMYGRCGEILMGQRV 343

Query: 510 VETMPFAPNVVIWGSLMAACRVHG 533
            + M    +VV W SL++   +HG
Sbjct: 344 FDNMK-NRDVVSWNSLISIYGMHG 366



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 169/381 (44%), Gaps = 57/381 (14%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           S+  A  +F +       V N   RA++     K  L ++++M   G+  DRF++  +LK
Sbjct: 128 SIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLK 187

Query: 126 AIARAE----GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
           A   +E     L +G ++H    + G+ ++  V T L+ +Y   G +  A  +F  M  +
Sbjct: 188 ACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTK 247

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS--NVEPDEMVLSKILSACSRAGNLSYGEA 239
           + V WS MI  + +N +  + L LF+ M +   +  P+ + +  +L AC+    L  G+ 
Sbjct: 248 NFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKL 307

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H +I+   +     + + LITMY  CG + M + +FD +  +++V   +++S Y   G 
Sbjct: 308 IHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGF 367

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
            + A  IF+ M+ +                               G  P  ++ ++V+ A
Sbjct: 368 GKKAIQIFENMIHQ-------------------------------GSSPSYISFITVLGA 396

Query: 360 CAHLGVLDQAQ----------RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           C+H G++++ +          RIH  ++  A          ++D+  +   L+ A ++ E
Sbjct: 397 CSHAGLVEEGKILFESMLSKYRIHPGMEHYA---------CMVDLLGRANRLDEAIKLIE 447

Query: 410 RMR-RRNVISWTSMINAFAIH 429
            M        W S++ +  IH
Sbjct: 448 DMHFEPGPTVWGSLLGSCRIH 468



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 9/224 (4%)

Query: 21  SCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAP 80
           S S L   K+ HA IL+  H + +   ++  LL            S+ YA S+F  +P  
Sbjct: 195 SVSPLQKGKEIHAHILR--HGYEANIHVMTTLLDVYAKF-----GSVSYANSVFCAMPTK 247

Query: 81  PSRVSNKFIRAISWSHRPKHALKVFLKMLNEG--LTIDRFSFPPILKAIARAEGLLEGMQ 138
                +  I   + +  P  AL++F  M+ E      +  +   +L+A A    L +G  
Sbjct: 248 NFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKL 307

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +HG   + G  S   V   L+ MYG CG+IL  + +FD M  RD+V W+ +I  Y  +G 
Sbjct: 308 IHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGF 367

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
             + + +FE M      P  +    +L ACS AG +  G+ + E
Sbjct: 368 GKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFE 411



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 8/214 (3%)

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
           C   P + T   +I +CA    L     +H  +  + F  D  +   +I+MY + GS++ 
Sbjct: 72  CEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDR 131

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
           AR+VF+  R R +  W ++  A A+ G  +  L  + +M    I  +  T+  VL AC  
Sbjct: 132 ARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVV 191

Query: 464 AGL----VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           + L    + +G+EI A +   +           ++D++ +   +  A  +   MP   N 
Sbjct: 192 SELSVSPLQKGKEIHAHIL-RHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMP-TKNF 249

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553
           V W S M AC    E+ +      QL+ L+  HD
Sbjct: 250 VSW-SAMIACFAKNEMPMKALELFQLMMLEA-HD 281


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/574 (38%), Positives = 343/574 (59%), Gaps = 3/574 (0%)

Query: 151 DPFVQT--GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
           +P V +   L+  Y   G + +A+ +FDKM +R+ + W+ MI GY QNG  +E L L +E
Sbjct: 350 EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQE 409

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           +  S + P    L+ I  ACS    L  G  VH   +      ++   + LITMY  C  
Sbjct: 410 LHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRN 469

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           M+ A+ +F +++ K++V   + ++   +   +++AR  FD M+ +D + W+ +IS YA  
Sbjct: 470 MEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHA 529

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
               EA+  F  M      P+   +  ++  C  LG     Q+IH    K     +L V 
Sbjct: 530 EQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVA 589

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           NA+I MY KCG  +S R +F+ M  R++ +W ++I  +A HG  R A+  +  M+   + 
Sbjct: 590 NALISMYFKCGCADS-RRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVL 648

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
           PN VTF+G+L ACSHAGLVDEG + F SM+ +Y + P  EHY CMVDL GR   ++ A +
Sbjct: 649 PNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQ 708

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
            +  MP  P+ VIW +L+ AC++H   E+ + AA++L +++P + G  V+LSNIY+    
Sbjct: 709 FIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGM 768

Query: 569 WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
           W +V E+RK MK++G++KE  CS  ++ ++++ F+T D+ H+Q ++I   L E+ + LK 
Sbjct: 769 WGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKA 828

Query: 629 AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
            GYVPD    L D+++E+K   +L+HSEKLA+ Y L+++ K   I+I+KNLR+C DCH F
Sbjct: 829 TGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTF 888

Query: 689 IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           IK VS V  R+I IRD  RFHH+++G CSC+D+W
Sbjct: 889 IKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 194/379 (51%), Gaps = 23/379 (6%)

Query: 163 GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
           G  G++ +AR +FD M  RDI+ W+ MI  Y  NG+ D   +L++ +   N+    +   
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAI--- 101

Query: 223 KILSACSRAGNLSYGEAVHEFIID-NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
            +LS   R G +     V + +++ N VA +A     +I+ Y   G + MA+ LFD +  
Sbjct: 102 -LLSGYGRLGRVLEARRVFDGMLERNTVAWNA-----MISCYVQNGDITMARRLFDAMPS 155

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           +++    +M++GY  + Q+ DAR +F++M E++L+ W+ MISGY    +  +A  +F +M
Sbjct: 156 RDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKM 215

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS- 400
              G+ PD+    S +SA   LG LD  + + +   K  F  D+ +  AI+++Y++  S 
Sbjct: 216 HREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSV 275

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           L++A + FE M  RN  +W++MI A +  G    A+  + +   +SI        G+   
Sbjct: 276 LDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGL--- 332

Query: 461 CSHAGLVDEGREIFASMTNEYNIP-PKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
            +  G +D+ R +F        IP P    +  ++  + +  ++ EA EL + MPF  N 
Sbjct: 333 -AQCGRIDDARILFE------QIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPF-RNT 384

Query: 520 VIWGSLMAACRVHGEIELA 538
           + W  ++A    +G  E A
Sbjct: 385 ISWAGMIAGYAQNGRSEEA 403



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 187/389 (48%), Gaps = 52/389 (13%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL--LEGMQVHGLGTKLGFGSDPFVQTGL 158
           A  +F KM  EGL  D+ +F   L A+     L  LE ++V  L  K GF  D  + T +
Sbjct: 208 AWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRV--LALKTGFERDVVIGTAI 265

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + +Y     +LD  + F                              FE M    +E +E
Sbjct: 266 LNVYSRDTSVLDTAIKF------------------------------FESM----IERNE 291

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
              S +++A S  G +    AV+E     ++A     ++ LIT  A CG +D A+ LF++
Sbjct: 292 YTWSTMIAALSHGGRIDAAIAVYERDPVKSIAC----RTALITGLAQCGRIDDARILFEQ 347

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +    +V   A+++GY + G V +A+ +FD+M  ++ I W+ MI+GYA+N   +EAL L 
Sbjct: 348 IPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLL 407

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            E+   GM P   ++ S+  AC+++  L+   ++H    K     +    NA+I MY KC
Sbjct: 408 QELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKC 467

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFA---IHGDARNALIFFNKMKDESIDPNGVTFI 455
            ++E AR+VF RM  ++++SW S + A     +  +ARN         D  +  + V++ 
Sbjct: 468 RNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTF-------DNMLSRDDVSWT 520

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIP 484
            ++ A +HA   +E    F +M  E+ +P
Sbjct: 521 TIISAYAHAEQSNEAMGAFKTMFCEHELP 549



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 171/396 (43%), Gaps = 65/396 (16%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P   +      I   + + R + AL +  ++   G+     S   I  A + 
Sbjct: 372 AKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSN 431

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G QVH L  K+G   + F    L+ MYG C  +  AR +F +M  +DIV W+  
Sbjct: 432 IVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSF 491

Query: 190 IDGYFQNGLFDEVLNLFEEM------------------KMSNVE-------------PDE 218
           +    QN L DE  N F+ M                  + SN               P+ 
Sbjct: 492 LAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNS 551

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
            +L+ +L  C   G    G+ +H   I   +  +  + + LI+MY  CGC D ++ +FD 
Sbjct: 552 PILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDL 610

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +  +++     +++GY++ G                                 +EA+K++
Sbjct: 611 MEERDIFTWNTIITGYAQHGL-------------------------------GREAIKMY 639

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA-IIDMYAK 397
             M+  G+ P++VT + +++AC+H G++D+  +    + ++     L  + A ++D+  +
Sbjct: 640 QHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGR 699

Query: 398 CGSLESARE-VFERMRRRNVISWTSMINAFAIHGDA 432
            G ++ A + +++     + + W++++ A  IH +A
Sbjct: 700 TGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNA 735



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 30/244 (12%)

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           +A +    R G+V +AR +FD M  +D+I W++MIS Y  N  P  A  L++ +    M+
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN----NAIIDMYAKCGSLES 403
              +    ++S    LG + +A+R+        F G L  N    NA+I  Y + G +  
Sbjct: 98  TGAI----LLSGYGRLGRVLEARRV--------FDGMLERNTVAWNAMISCYVQNGDITM 145

Query: 404 AREVFERMRRRNVISWTSMINAFAIHG----DARNALIFFNKMKDESIDPNGVTFIGVLY 459
           AR +F+ M  R+V SW SM+  +  H     DARN    F KM + ++    V   G   
Sbjct: 146 ARRLFDAMPSRDVSSWNSMLTGYC-HSLQMVDARN---LFEKMPERNLVSWTVMISGYGR 201

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL-LREALELVE-TMPFAP 517
             +H    D    IF  M  E  +P +      +  + G  NL + E+L ++     F  
Sbjct: 202 IENHGKAWD----IFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFER 257

Query: 518 NVVI 521
           +VVI
Sbjct: 258 DVVI 261


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/632 (37%), Positives = 356/632 (56%), Gaps = 32/632 (5%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +L+A  +++ L E  ++H    K    +D  V   L  +Y +C +++ AR +FD++    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           ++ W+ +I  Y  NG FD  ++L+  M    V P++     +L ACS    +  G  +H 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
                 +  D  + + L+  YA CG +  A+ LF  +  +++V   AM++G S  G  +D
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 303 A--------------------------------RLIFDQMVEKDLICWSAMISGYAENNH 330
           A                                R IFD M  ++ + WSAMI GY  ++ 
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDC 253

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
            +EAL +F  MQ+ G+ PD  TML V+ AC+HL  L      H Y+    F  D  + NA
Sbjct: 254 MKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNA 313

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           +IDMY+KCG +  AREVF RM R +++SW +MI  + IHG    AL  F+ +    + P+
Sbjct: 314 LIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPD 373

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
            +TFI +L +CSH+GLV EGR  F +M+ +++I P+ EH  CMVD+ GRA L+ EA   +
Sbjct: 374 DITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFI 433

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
             MPF P+V IW +L++ACR+H  IEL E  +K++  L P+  G  VLLSNIY+   RW 
Sbjct: 434 RNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWD 493

Query: 571 DVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAG 630
           D   +R + K+ G+ K   CS IE+N  V+ F+  D+SH Q  QI  KL E++ E+K  G
Sbjct: 494 DAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLG 553

Query: 631 YVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIK 690
           Y  +      D+E+EEK +++L+HSEKLA+ +G+++ K    I + KNLRVC DCH  IK
Sbjct: 554 YQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIK 613

Query: 691 LVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            ++ +  REI +RD  RFHH+K+G C+C D+W
Sbjct: 614 FMTLITKREITVRDANRFHHFKNGTCNCGDFW 645



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/451 (25%), Positives = 217/451 (48%), Gaps = 63/451 (13%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83
           SLT  K+ H   LK  ++ ++ +S+L KL     S      + +  A  +F +IP P   
Sbjct: 23  SLTEAKKIHQHFLK--NTSNADSSVLHKLTRLYLSC-----NQVVLARRLFDEIPNPSVI 75

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
           + N+ IRA +W+     A+ ++  ML+ G+  +++++P +LKA +    + +G+++H   
Sbjct: 76  LWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHA 135

Query: 144 TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
              G  SD FV T LV  Y  CG +++A+ +F  MS+RD+V W+ MI G    GL D+ +
Sbjct: 136 KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAV 195

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI-IDNNVALDAHLQSTLITM 262
            L  +M+   + P+   +  +L  C     L Y   + + + + N V+      S +I  
Sbjct: 196 QLIMQMQEEGICPNSSTIVGVLPTCQ---CLLYARKIFDVMGVRNEVS-----WSAMIGG 247

Query: 263 YANCGCMDMAKGLFDKVLLKNL-------------------------------------- 284
           Y    CM  A  +F  + L  +                                      
Sbjct: 248 YVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATD 307

Query: 285 -VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
            ++  A++  YS+ G++  AR +F++M   D++ W+AMI GY  +    EAL LF+++  
Sbjct: 308 TLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLA 367

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA--FGGDLRVNNAI--IDMYAKCG 399
            G+KPD +T + ++S+C+H G++ + +   L+ D  +  F    R+ + I  +D+  + G
Sbjct: 368 LGLKPDDITFICLLSSCSHSGLVMEGR---LWFDAMSRDFSIVPRMEHCICMVDILGRAG 424

Query: 400 SLESAREVFERMR-RRNVISWTSMINAFAIH 429
            ++ A      M    +V  W+++++A  IH
Sbjct: 425 LIDEAHHFIRNMPFEPDVRIWSALLSACRIH 455



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 5/202 (2%)

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           K   L ++ AC     L +A++IH +  KN    D  V + +  +Y  C  +  AR +F+
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            +   +VI W  +I A+A +G    A+  ++ M    + PN  T+  VL ACS    +++
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G EI  S    + +         +VD + +  +L EA  L  +M    +VV W +++A C
Sbjct: 128 GVEIH-SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGC 185

Query: 530 RVHGEIELAEFAAKQLLQLDPD 551
            ++G   L + A + ++Q+  +
Sbjct: 186 SLYG---LCDDAVQLIMQMQEE 204


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/627 (37%), Positives = 356/627 (56%), Gaps = 41/627 (6%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A+++FL ML  G   D+++   +L A         G Q+H L  +LG  SD  V  GLV 
Sbjct: 239 AVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVD 298

Query: 161 MYGAC--GKIL-DARLMFDKMSYRDIVPWSVMIDGYFQNGLFD-EVLNLFEEMKMSNVEP 216
           MY     G+ L +AR +F++M   +++ W+ ++ GY Q G  D +V+ LF +M    + P
Sbjct: 299 MYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRP 358

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           + +  S +L AC+  G+   G  +H   + +N+A                   D+     
Sbjct: 359 NHITYSSMLKACANLGDQDSGRQIHTHCVKSNLA-------------------DLN---- 395

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
                   VV  A+VS Y+ +G +E+AR  FDQ+ EK+++ +S  + G   +N  Q+   
Sbjct: 396 --------VVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQDY-- 445

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
              +++   +     T  S+ISA A +G+L + QR+H    K  FG D  + N+++ MY+
Sbjct: 446 ---QIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYS 502

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           +CG L  A +VF+ M   NVISWTSMI+  A HG A  AL  F+ M    + PN VT+I 
Sbjct: 503 RCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIA 562

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           VL ACSHAGLV EG+E F  M   + + P+ EHY CMVDL GR+ L+ +AL+ +  MP  
Sbjct: 563 VLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQ 622

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
            + ++W +L+ AC+ H  +++ E AA  ++QL+P      VLLSN+YA+   W  V  +R
Sbjct: 623 VDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIR 682

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
             M+++ ++KE+  S + ++N ++EF   D SH Q ++IY KL  +I E+K  GYVPD  
Sbjct: 683 SLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTS 742

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLIS-SKKDSCIRIVKNLRVCEDCHNFIKLVSKV 695
             L D+ DE K   +L HSEK+A+ +GLIS +     IRI KNLRVC DCH+ +K VSK 
Sbjct: 743 VVLHDMSDELKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKA 802

Query: 696 YAREIVIRDRTRFHHYKDGVCSCKDYW 722
             REI++RD  RFH  KDG CSC +YW
Sbjct: 803 TGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 164/347 (47%), Gaps = 35/347 (10%)

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM--SYRDIVPWSVMI 190
           L   +Q H L T     +D  V   L+ +Y  C  +  AR +FD M    RD+V W+ M 
Sbjct: 65  LGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMA 124

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
               +NG   E L LF E     + P+   L     AC          A   F +     
Sbjct: 125 SCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACF---------ASELFHLAGGAV 175

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
           L    +        + GC                    A++  +++ G +   R +FD +
Sbjct: 176 LGLVFKLGFWGTDVSVGC--------------------ALIDMFAKNGDLVAMRRVFDGL 215

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
            E+ ++ W+ +I+ YA++ +  EA++LF +M   G +PD+ T+ S++SAC  LG     Q
Sbjct: 216 FERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQ 275

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKC---GSLESAREVFERMRRRNVISWTSMINAFA 427
           ++H    +     D  V+  ++DMYAK     SL +AREVF RM + NV++WT++++ + 
Sbjct: 276 QLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYV 335

Query: 428 IHGDARN-ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
             G   N  +I F KM +E I PN +T+  +L AC++ G  D GR+I
Sbjct: 336 QRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQI 382



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 127/284 (44%), Gaps = 40/284 (14%)

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDK--VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
           DA + ++L+T+Y+ C  +  A+ +FD   V L++LV  TAM S  SR             
Sbjct: 83  DAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSR------------- 129

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC--AHLGVLD 367
                             N    EAL+LF E    G+ P+  T+ +   AC  + L  L 
Sbjct: 130 ------------------NGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLA 171

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
               + L      +G D+ V  A+IDM+AK G L + R VF+ +  R V+ WT +I  +A
Sbjct: 172 GGAVLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYA 231

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
             G +  A+  F  M +    P+  T   +L AC+  G    G+++  S+     +    
Sbjct: 232 QSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLH-SLALRLGLESDS 290

Query: 488 EHYGCMVDLFGRAN---LLREALELVETMPFAPNVVIWGSLMAA 528
                +VD++ +++    L  A E+   MP   NV+ W +L++ 
Sbjct: 291 CVSCGLVDMYAKSHNGQSLHNAREVFNRMP-KHNVMAWTALLSG 333



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 7/168 (4%)

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM--RRRNVISW 419
           HLG   +A + HL    +    D  V N+++ +Y+KC ++ +AR VF+ M    R+++SW
Sbjct: 64  HLG---RALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSW 120

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           T+M +  + +G    AL  F +  +E + PN  T      AC  + L          +  
Sbjct: 121 TAMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVF 180

Query: 480 EYNIPPKYEHYGC-MVDLFGRANLLREALELVETMPFAPNVVIWGSLM 526
           +          GC ++D+F +   L  A+  V    F   VV+W  L+
Sbjct: 181 KLGFWGTDVSVGCALIDMFAKNGDL-VAMRRVFDGLFERTVVVWTLLI 227


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/503 (42%), Positives = 321/503 (63%)

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
           + ++PD   ++ ++ AC+  G    G  VH   I      D H+Q+ LI++YA  GC+D 
Sbjct: 110 NGLKPDNYTVNFLVQACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDS 169

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
              +F+ V   + V  TAMV+  +R G V  AR +F+ M EKD I W+AMISGYA+    
Sbjct: 170 CHKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGES 229

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           +EAL LF+ MQ+ G+K + V+M+SV+SAC  LG LDQ +  H YI++N     +R+   +
Sbjct: 230 REALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTL 289

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           +D+YAKCG ++ A EVF  M  +NV +W+S +N  A++G     L  F+ MK + + PN 
Sbjct: 290 VDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNA 349

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
           VTF+ VL  CS  G VDEG++ F SM NE+ I P+ +HYGC+VDL+ RA  L +A+ +++
Sbjct: 350 VTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQ 409

Query: 512 TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
            MP   +  +W SL+ A R++  +EL   A+K++L+L+  + GA VLLSNIYA    W +
Sbjct: 410 QMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDN 469

Query: 572 VGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY 631
           V  +R+SMK +G+ K+  CS +E+N EV+EF   D+SH + ++I     ++   L+ AGY
Sbjct: 470 VSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGY 529

Query: 632 VPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKL 691
             D    + D+++EEK + +  HSEK A+ +G++S K D  IRIVKNLRVC DCH    +
Sbjct: 530 KADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKADVPIRIVKNLRVCGDCHQVSMM 589

Query: 692 VSKVYAREIVIRDRTRFHHYKDG 714
           +SK++ REI++RDR RFHH+KDG
Sbjct: 590 ISKIFNREIIVRDRNRFHHFKDG 612



 Score =  358 bits (918), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 188/563 (33%), Positives = 309/563 (54%), Gaps = 36/563 (6%)

Query: 165  CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG--LFDEVLNLFEEMKMSNV--EPDEMV 220
            CG      +M  K+  R+I+        +F++G     +   +   M  S V   P+E+ 
Sbjct: 580  CGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGRGYLGKCFEVLSRMMRSEVGFRPNEVT 639

Query: 221  LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
               ++SAC   GN   G  +H  ++ + V                               
Sbjct: 640  FLSMISACVHGGNKEEGVCIHGLVMKSGV------------------------------- 668

Query: 281  LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            L+ + V  A+++ Y + G +  +  +F+ +  K+L+ W+ MI  + +N   +E L  FN 
Sbjct: 669  LEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNM 728

Query: 341  MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
             +  G+KPD+ T L+V+  C  +GV+  +Q IH  I    F  +  +  A++D+YAK G 
Sbjct: 729  SRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGR 788

Query: 401  LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
            LE +  VF  +   + ++WT+M+ A+A HG  R+A+  F  M    + P+ VTF  +L A
Sbjct: 789  LEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNA 848

Query: 461  CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
            CSH+GLV+EGR  F +M+  Y I P+ +HY CMVDL GR+ LL++A  L++ MP  P+  
Sbjct: 849  CSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSG 908

Query: 521  IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
            +WG+L+ ACRV+ + +L   AAK+L +L+P      ++LSNIY+    W+D   +R  MK
Sbjct: 909  VWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMK 968

Query: 581  ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPA-GYVPDIHSAL 639
            ++G+++    S IE  N++++F+  D SH ++++I +KL E+  ++K   G+       L
Sbjct: 969  QKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVL 1028

Query: 640  VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
             D++++ K E+I  HSEK+A+ +GL+       I I KNLR+C DCH   K +S +  R 
Sbjct: 1029 HDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGDCHETAKAISLIEKRR 1088

Query: 700  IVIRDRTRFHHYKDGVCSCKDYW 722
            I+IRD  RFHH+ +G CSC+DYW
Sbjct: 1089 IIIRDSKRFHHFLEGSCSCRDYW 1111



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 127/486 (26%), Positives = 226/486 (46%), Gaps = 74/486 (15%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P  + + S ++   ++Q HA   KL      ++  L+   + + +L   T   L YA  I
Sbjct: 16  PAISLLDSGTTFKEIRQIHA---KLYVDGTLKDDHLVGQFVKAVALSDHT--YLDYANQI 70

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLN--EGLTIDRFSFPPILKAIARAE 131
             +   P     N  IRA   S  P+ +   + ++L+   GL  D ++   +++A     
Sbjct: 71  LDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLG 130

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA--------------------------- 164
               G+QVHG+  + GF +DP VQTGL+ +Y                             
Sbjct: 131 MRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVT 190

Query: 165 ----CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
               CG +  AR +F+ M  +D + W+ MI GY Q G   E LNLF  M++  V+ + + 
Sbjct: 191 ACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVS 250

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           +  +LSAC++ G L  G   H +I  N + +   L +TL+ +YA CG MD          
Sbjct: 251 MISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMD---------- 300

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                                 A  +F  M EK++  WS+ ++G A N   ++ LKLF+ 
Sbjct: 301 ---------------------KAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSL 339

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKC 398
           M+  G+ P+ VT +SV+  C+ +G +D+ Q+ H    +N FG + ++++   ++D+YA+ 
Sbjct: 340 MKQDGVTPNAVTFVSVLRGCSVVGFVDEGQK-HFDSMRNEFGIEPQLDHYGCLVDLYARA 398

Query: 399 GSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIG 456
           G LE A  + ++M  + +   W+S+++A  ++ +    ++   KM + E+ +      + 
Sbjct: 399 GRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELETSNHGAYVLLS 458

Query: 457 VLYACS 462
            +YA S
Sbjct: 459 NIYADS 464



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 153/325 (47%), Gaps = 35/325 (10%)

Query: 112 GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA 171
           G   +  +F  ++ A        EG+ +HGL  K G   +  V   L+ +YG  G ++ +
Sbjct: 632 GFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISS 691

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
             +F+ +S +++V W+ MI  + QNGL +E L  F   +   ++PD+     +L  C   
Sbjct: 692 CKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDI 751

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
           G +   + +H  I+                    CG               N  ++TA++
Sbjct: 752 GVVRLSQGIHGLIM-------------------FCG------------FNANTCITTALL 780

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
             Y++ G++ED+  +F ++   D + W+AM++ YA + + ++A+K F  M   G+ PD V
Sbjct: 781 DLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHV 840

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN--NAIIDMYAKCGSLESAREVFE 409
           T   +++AC+H G++++  R +       +  + R++  + ++D+  + G L+ A  + +
Sbjct: 841 TFTHLLNACSHSGLVEEG-RYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIK 899

Query: 410 RMRRRNVIS-WTSMINAFAIHGDAR 433
            M        W +++ A  ++ D +
Sbjct: 900 EMPMEPSSGVWGALLGACRVYKDTQ 924


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/566 (38%), Positives = 336/566 (59%), Gaps = 10/566 (1%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+G Y     + DAR +FD+M  RD++ W+ MI GY Q G   +   LF E  + +V   
Sbjct: 207 LMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDV--- 263

Query: 218 EMVLSKILSACSRAGNLSYGEA-VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
               + ++S   + G +        E  + N ++ +A     ++  Y     M +A  LF
Sbjct: 264 -FTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNA-----MLAGYVQYKKMVIAGELF 317

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           + +  +N+     M++GY + G +  AR +FD M ++D + W+A+ISGYA+N H +EAL 
Sbjct: 318 EAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALN 377

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           +F EM+  G   ++ T    +S CA +  L+  +++H  + K  F     V NA++ MY 
Sbjct: 378 MFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYF 437

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KCGS + A +VFE +  ++V+SW +MI  +A HG  R AL+ F  MK   + P+ +T +G
Sbjct: 438 KCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVG 497

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           VL ACSH+GL+D G E F SM  +YN+ P  +HY CM+DL GRA  L EA  L+  MPF 
Sbjct: 498 VLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFD 557

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
           P    WG+L+ A R+HG  EL E AA+ + +++P + G  VLLSN+YA   RW DVG++R
Sbjct: 558 PGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMR 617

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
             M+E G+ K    S +E+ N+++ F   D  H + D+IY  L E+  +++  GYV    
Sbjct: 618 SKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTK 677

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
             L D+E+EEK  ++ +HSEKLA+ +G+++      IR++KNLRVC+DCHN IK +SK+ 
Sbjct: 678 LVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIV 737

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
            R I++RD  RFHH+ +G+CSC DYW
Sbjct: 738 GRLIILRDSHRFHHFSEGICSCGDYW 763



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 193/405 (47%), Gaps = 38/405 (9%)

Query: 167 KILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS 226
           ++ +A  +FD M  +D+V W+ M+ GY QNG  DE   +F +M   N     +  + +L+
Sbjct: 123 RLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRN----SISWNGLLA 178

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV 286
           A    G L   EA   F   +N  L +   + L+  Y     +  A+ LFD++ +++++ 
Sbjct: 179 AYVHNGRLK--EARRLFESQSNWELIS--WNCLMGGYVKRNMLGDARQLFDRMPVRDVIS 234

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346
              M+SGY++ G +  A+ +F++   +D+  W+AM+SGY +N    EA K F+EM V   
Sbjct: 235 WNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPV--- 291

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG----DLRVNNAIIDMYAKCGSLE 402
                   + IS  A L    Q ++  + I    F      ++   N +I  Y + G + 
Sbjct: 292 -------KNEISYNAMLAGYVQYKK--MVIAGELFEAMPCRNISSWNTMITGYGQNGGIA 342

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            AR++F+ M +R+ +SW ++I+ +A +G    AL  F +MK +    N  TF   L  C+
Sbjct: 343 QARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCA 402

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMV-----DLFGRANLLREALELVETMPFAP 517
               ++ G+++   +     +   +E  GC V      ++ +     EA ++ E +    
Sbjct: 403 DIAALELGKQVHGQV-----VKAGFET-GCFVGNALLGMYFKCGSTDEANDVFEGIE-EK 455

Query: 518 NVVIWGSLMAACRVH--GEIELAEFAAKQLLQLDPDHDGALVLLS 560
           +VV W +++A    H  G   L  F + +   + PD    + +LS
Sbjct: 456 DVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLS 500



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 187/410 (45%), Gaps = 64/410 (15%)

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           DIV W+  I  + +NG  D  L +F  M                    R  ++SY     
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSM-------------------PRRSSVSY----- 80

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
                          + +I+ Y       +A+ LFDK+  ++L     M++GY R  ++ 
Sbjct: 81  ---------------NAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLG 125

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
           +A  +FD M +KD++ W+AM+SGYA+N    EA ++FN+M       + ++   +++A  
Sbjct: 126 EAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMP----HRNSISWNGLLAAYV 181

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
           H G L +A+R+     ++    +L   N ++  Y K   L  AR++F+RM  R+VISW +
Sbjct: 182 HNGRLKEARRLF----ESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNT 237

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI+ +A  GD   A   FN    ES   +  T+  ++      G+VDE R+ F  M    
Sbjct: 238 MISGYAQVGDLSQAKRLFN----ESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM---- 289

Query: 482 NIPPKYE-HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
             P K E  Y  M+  + +   +  A EL E MP   N+  W +++     +G I     
Sbjct: 290 --PVKNEISYNAMLAGYVQYKKMVIAGELFEAMP-CRNISSWNTMITGYGQNGGIA---- 342

Query: 541 AAKQLLQLDPDHDG-ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
            A++L  + P  D  +   + + YA++  +++   +   MK  G    R+
Sbjct: 343 QARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRS 392



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 110/228 (48%), Gaps = 1/228 (0%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F  +P          I   + +   + AL +F++M  +G + +R +F   L   A 
Sbjct: 344 ARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCAD 403

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G QVHG   K GF +  FV   L+GMY  CG   +A  +F+ +  +D+V W+ M
Sbjct: 404 IAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTM 463

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDNN 248
           I GY ++G   + L LFE MK + V+PDE+ +  +LSACS +G +  G E  +    D N
Sbjct: 464 IAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYN 523

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           V   +   + +I +    G ++ A+ L   +       S   + G SR
Sbjct: 524 VKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASR 571


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/733 (32%), Positives = 395/733 (53%), Gaps = 60/733 (8%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           +ST    +   T P    I +C +L   ++ H  +LKL                  F   
Sbjct: 133 LSTSFLQSDHYTFPP--VIRACGNLDDGRKVHCLVLKLG-----------------FECD 173

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAI-SWSH---------RPKHALKVFLKMLN 110
               +S  +  S F  +    +   N  IR I +W+          +   AL+VF +M  
Sbjct: 174 VYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRF 233

Query: 111 EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD 170
           + +++D  +   +L    + + ++ G+ +H    KLG   D FV   L+ MY   G++  
Sbjct: 234 KSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRS 293

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           A  +F++M  RDIV W+ ++  + QN      L ++ +M    V PD + L  + S  + 
Sbjct: 294 AETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAE 353

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
            GN     ++H F+                       C            L ++ +  A+
Sbjct: 354 LGNFLSSRSIHGFVTRR--------------------CW----------FLHDIALGNAI 383

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPD 349
           +  Y++ G ++ AR +F+ +  KD+I W+++I+GY++N    EA+ +++ M+   G  P+
Sbjct: 384 IDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPN 443

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           + T +S+++A + LG L Q  + H  + KN    D+ V+  ++DMY KCG L  A  +F 
Sbjct: 444 QGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFY 503

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            +  ++ +SW ++I+   +HG    A+  F +M+ E + P+ +TF+ +L ACSH+GLVDE
Sbjct: 504 EVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDE 563

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G+  F  M   Y I P  +HYGCMVDLFGRA  L +A   V+ MP  P+V +WG+L+ AC
Sbjct: 564 GQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGAC 623

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
           R+H  +EL    +  LL+++ ++ G  VLLSNIYAK   W+ V E+R   ++RG+ K   
Sbjct: 624 RIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPG 683

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
            S IE++ ++  F T +++H + ++IY +L  + +++K  GYVPD +  L D+ED+EK  
Sbjct: 684 WSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEKEN 743

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
           ++  HSE+LA+ +G+IS+   + ++I KNLRVC DCHN  K +SK+  REI++RD  RFH
Sbjct: 744 ILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNRFH 803

Query: 710 HYKDGVCSCKDYW 722
           H+KDGVCSC DYW
Sbjct: 804 HFKDGVCSCGDYW 816



 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 159/580 (27%), Positives = 277/580 (47%), Gaps = 61/580 (10%)

Query: 22  CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPP 81
           C+ +   KQ HA ++    S  +Q+  L   L+  ++     P    +A   F QI    
Sbjct: 53  CTKVHLAKQLHALLVV---SGKTQSIFLSAKLINRYAFLGDIP----HARLTFDQIQTKD 105

Query: 82  SRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLEGMQVH 140
               N  I A +       A+  F + L+   L  D ++FPP+++A    +   +G +VH
Sbjct: 106 VYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLD---DGRKVH 162

Query: 141 GLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
            L  KLGF  D ++    +  Y   G +  A  +FD M  RDI  W+ MI G++ NG   
Sbjct: 163 CLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVA 222

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
           E L +F+EM+  +V  D + +S +L  C +  ++  G  +H + I   +  D  + + LI
Sbjct: 223 EALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALI 282

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
            MYA  G                               ++  A  IF+QM  +D++ W++
Sbjct: 283 NMYAKFG-------------------------------ELRSAETIFNQMKVRDIVSWNS 311

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           +++ + +N  P  AL ++N+M   G+ PD +T++S+ S  A LG    ++ IH ++ +  
Sbjct: 312 LLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRC 371

Query: 381 -FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFF 439
            F  D+ + NAIIDMYAK G ++SAR+VFE +  ++VISW S+I  ++ +G A  A+  +
Sbjct: 372 WFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVY 431

Query: 440 NKMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           + M+  S   PN  T++ +L A S  G + +G +    +   +     +    C+VD++G
Sbjct: 432 SSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVS-TCLVDMYG 490

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHG----EIELAEFAAKQLLQLDPDHDG 554
           +   L +AL L   +P   +V  W ++++   +HG     ++L  F   Q   + PDH  
Sbjct: 491 KCGKLADALSLFYEVPHQSSVS-WNAIISCHGLHGYGLKAVKL--FKEMQSEGVKPDHIT 547

Query: 555 ALVLLSNI----YAKDKRW-----QDVGELRKSMKERGIL 585
            + LLS         + +W     Q+   +R S+K  G +
Sbjct: 548 FVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCM 587


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/615 (37%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P  + + +C+S+  MK+ HAQ++  S    S    L +L+  +F    +   +L Y   I
Sbjct: 56  PLLSLLEACTSMAKMKEIHAQMI--STGLISDGFALSRLV--AFC-AISEWRNLDYCDKI 110

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIARAEG 132
            +          N  IR    S  P +A+ ++  ML +G  I D +++P + K  A    
Sbjct: 111 LNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSL 170

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
                ++ G   +LGF SD FV   ++ +  +CG++L AR +FD+   RD+V W+ +I+G
Sbjct: 171 SWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIING 230

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y + GL DE  +L+ +M   NV PDE+ +  ++SA ++  NL+ G  +H+ I +  + L 
Sbjct: 231 YVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLT 290

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             L + L+ MY  C  ++ AK LF+ +  K +V  T MV GY++ G +E A  +F++M E
Sbjct: 291 VPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPE 350

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           KD++ W+A+I G+ +    +EAL LF+EMQ   + PDK+T+++ +SAC+ LG LD    +
Sbjct: 351 KDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWM 410

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H Y+DK+    ++ +  A++DMYAKCG+++ A +VFE M  RN ++WT++I   A+HG  
Sbjct: 411 HHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQP 470

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
             A+ +F++M    + P+ +TFIGVL AC H GLVD+GR+ F  MT++Y I PK +HY C
Sbjct: 471 HAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSC 530

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           +VDL GRA  L EA EL+ +MPF P+ V+WG+L    R+HG + + E AA +LL+LDP  
Sbjct: 531 LVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHD 590

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
            G  VLL+N+Y     W+   ++RK M+ERG+ K   CS IEMN  VY+F+  D+SH Q+
Sbjct: 591 GGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQS 650

Query: 613 DQIYEKLNEVISELK 627
           ++IYE L  +  +++
Sbjct: 651 EKIYECLTRLTRQIE 665


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/634 (38%), Positives = 381/634 (60%), Gaps = 40/634 (6%)

Query: 94  WSHRPKHALKVFL--KMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSD 151
           +SH   HA  V +  +M   G+  D F +P ++K+         G+  H    KLG GSD
Sbjct: 5   YSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTG-----GIGFHAHVLKLGHGSD 59

Query: 152 PFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
            FV+  ++ MY                  R +  W+ M+ GY++     +   LF+ M  
Sbjct: 60  AFVRNAVIDMYA-----------------RKVADWNAMVSGYWKWESEGQAQWLFDVMPE 102

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
            NV    +  + +++  ++  +L       + + + +V       + +++ YA  G  + 
Sbjct: 103 RNV----ITWTAMVTGYAKVKDLEAARRYFDCMPERSVVS----WNAMLSGYAQNGLAEE 154

Query: 272 AKGLFDKVL--LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
           A  LFD++L   +N V   AM+S Y R G ++ AR +F+ M  ++++ W++MI+GYA+N 
Sbjct: 155 ALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNG 214

Query: 330 HPQEALKLFNEMQVCG-MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
               A++LF EM     + PD+VTM+SVISAC HLG L+    +  ++ +N     +  +
Sbjct: 215 QSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGH 274

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           NA+I MY++CGS+E A+ VF+ M  R+V+S+ ++I+ FA HG    A+   + MK+  I+
Sbjct: 275 NAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIE 334

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
           P+ VTFIGVL ACSHAGL++EGR++F S+ +     P  +HY CMVDL GR   L +A  
Sbjct: 335 PDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKR 389

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
            +E MP  P+  ++GSL+ A R+H ++EL E AA +L +L+PD+ G  +LLSNIYA   R
Sbjct: 390 TMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGR 449

Query: 569 WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
           W+DV  +R++MK+ G+ K    S +E   ++++F+ ADRSH+++D IY+ L E+  +++ 
Sbjct: 450 WKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMRE 509

Query: 629 AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
           AGY+ D    L D+E+EEK E++  HSEKLA+CY L+ S+  + IR+VKNLRVC DCH  
Sbjct: 510 AGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTA 569

Query: 689 IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           IK++SK+  R I++RD  RFH + DG+CSCKDYW
Sbjct: 570 IKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 113/248 (45%), Gaps = 30/248 (12%)

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           M+  Y+      + + ++ +MQ CG++PD      +I +    G+       H ++ K  
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTGGI-----GFHAHVLKLG 55

Query: 381 FGGDLRVNNAIIDMYA--------------KCGSLESAREVFERMRRRNVISWTSMINAF 426
            G D  V NA+IDMYA              K  S   A+ +F+ M  RNVI+WT+M+  +
Sbjct: 56  HGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGY 115

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           A   D   A  +F+ M + S+    V++  +L   +  GL +E   +F  M   Y     
Sbjct: 116 AKVKDLEAARRYFDCMPERSV----VSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVT 171

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
           +     M+  + R   L  A +L  TMP   NVV W S++A    +G+  +A    K+++
Sbjct: 172 WN---AMISAYMRVGDLDSARKLFNTMP-GRNVVTWNSMIAGYAQNGQSAMAIELFKEMI 227

Query: 547 ---QLDPD 551
              +L PD
Sbjct: 228 TAKKLTPD 235


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 255/719 (35%), Positives = 391/719 (54%), Gaps = 45/719 (6%)

Query: 9   KPLTLPTSTAISSCSSLTHM---KQTHAQILK--LSHSHHSQNSLLLKLLLTSFSLPTTT 63
           +P  +  ++ +++C+S+  +   KQ H+ +LK  +S  + ++ SLL  L +    + T  
Sbjct: 242 RPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLL-DLYVKCGDIET-- 298

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
                 A  IF+        + N  + A         + ++F +M   G+  ++F++P I
Sbjct: 299 ------AHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCI 352

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L+       +  G Q+H L  K GF SD +V   L+ MY     +  AR + + +  RD+
Sbjct: 353 LRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDV 412

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           V W+ MI GY Q+   +E L  F+EM+   V PD + L+   SAC+    +  G  +H  
Sbjct: 413 VSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHAR 472

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           +  +  A D  + +TL+ +YA C                               G+ E+A
Sbjct: 473 VYVSGYAADISIWNTLVNLYARC-------------------------------GRSEEA 501

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
             +F ++  KD I W+ +ISG+ ++   ++AL +F +M   G K +  T +S ISA A+L
Sbjct: 502 FSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANL 561

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
             + Q +++H    K     +  V NA+I +Y KCGS+E A+ +F  M  RN +SW ++I
Sbjct: 562 ADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTII 621

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
            + + HG    AL  F++MK E + PN VTFIGVL ACSH GLV+EG   F SM+N Y +
Sbjct: 622 TSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGL 681

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
            P  +HY C+VD+ GRA  L  A   V+ MP   N +IW +L++AC+VH  IE+ E AAK
Sbjct: 682 NPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAK 741

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
            LL+L+P    + VLLSN YA   +W +  ++RK MK+RGI KE   S IE+ N V+ F 
Sbjct: 742 HLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFF 801

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYG 663
             DR H  +DQIY+ L+E+   L   GY  +  +   + E E+K      HSEKLA+ +G
Sbjct: 802 VGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFG 861

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           L++      +R++KNLRVC+DCH+++K  S+V  REIV+RD  RFHH+  G CSC DYW
Sbjct: 862 LMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 205/420 (48%), Gaps = 35/420 (8%)

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
           +++H      G G+D  +   L+ +Y   G +  AR +F ++S RD V W  M+ GY Q 
Sbjct: 63  LEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQR 122

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           GL  E   L+ +M  + V P   VLS +LSAC++    + G  +H  +       +  + 
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           + LI +Y   G   +A+                                +F  M+  D +
Sbjct: 183 NALIALYLGFGSFKLAE-------------------------------RVFCDMLFCDRV 211

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            ++ +ISG+A+  H + AL++F+EMQ+ G++PD VT+ S+++ACA +G L + +++H Y+
Sbjct: 212 TFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYL 271

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            K     D     +++D+Y KCG +E+A ++F    R NV+ W  M+ A+    D   + 
Sbjct: 272 LKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSF 331

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             F +M+   I PN  T+  +L  C+  G ++ G +I  S++ +          G ++D+
Sbjct: 332 EIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIH-SLSIKNGFESDMYVSGVLIDM 390

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDG 554
           + +   L +A +++E +    +VV W S++A    H   E  LA F   Q   + PD+ G
Sbjct: 391 YSKYRCLDKARKILEMLE-KRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIG 449



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 199/430 (46%), Gaps = 33/430 (7%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           K A +++ +M    +    +    +L A  + +   +G  +H    K  F S+ FV   L
Sbjct: 126 KEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNAL 185

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + +Y   G    A  +F  M + D V ++ +I G+ Q G  +  L +F+EM++S + PD 
Sbjct: 186 IALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDC 245

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           + ++ +L+AC+  G+L  G+ +H +++   ++ D   + +L+ +Y  CG           
Sbjct: 246 VTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCG----------- 294

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
                                +E A  IF+     +++ W+ M+  Y + +   ++ ++F
Sbjct: 295 --------------------DIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIF 334

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            +MQ  G+ P+K T   ++  C   G ++  ++IH    KN F  D+ V+  +IDMY+K 
Sbjct: 335 GQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKY 394

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
             L+ AR++ E + +R+V+SWTSMI  +  H     AL  F +M+D  + P+ +      
Sbjct: 395 RCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAA 454

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            AC+    + +G +I A +            +  +V+L+ R     EA  L   +     
Sbjct: 455 SACAGIKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDE 513

Query: 519 VVIWGSLMAA 528
           +  W  L++ 
Sbjct: 514 IT-WNGLISG 522


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/615 (37%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P  + + +C+S+  MK+ HAQ+  +S    S    L +L+  +F    +   +L Y   I
Sbjct: 56  PLLSLLEACTSMAKMKEIHAQM--ISTGLISDGFALSRLV--AFC-AISEWRNLDYCDKI 110

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIARAEG 132
            +          N  IR    S  P +A+ ++  ML +G  I D +++P + K  A    
Sbjct: 111 LNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSL 170

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
                ++ G   +LGF SD FV   ++ +  +CG++L AR +FD+   RD+V W+ +I+G
Sbjct: 171 SWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIING 230

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y + GL DE  +L+ +M   NV PDE+ +  ++SA ++  NL+ G  +H+ I +  + L 
Sbjct: 231 YVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLT 290

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             L + L+ MY  C  ++ AK LF+ +  K +V  T MV GY++ G +E A  +F++M E
Sbjct: 291 VPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPE 350

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           KD++ W+A+I G+ +    +EAL LF+EMQ   + PDK+T+++ +SAC+ LG LD    +
Sbjct: 351 KDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWM 410

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H Y+DK+    ++ +  A++DMYAKCG+++ A +VFE M  RN ++WT++I   A+HG  
Sbjct: 411 HHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQP 470

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
             A+ +F++M    + P+ +TFIGVL AC H GLVD+GR+ F  MT++Y I PK +HY C
Sbjct: 471 HAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSC 530

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           +VDL GRA  L EA EL+ +MPF P+ V+WG+L    R+HG + + E AA +LL+LDP  
Sbjct: 531 LVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHD 590

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
            G  VLL+N+Y     W+   ++RK M+ERG+ K   CS IEMN  VY+F+  D+SH Q+
Sbjct: 591 GGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQS 650

Query: 613 DQIYEKLNEVISELK 627
           ++IYE L  +  +++
Sbjct: 651 EKIYECLTRLTRQIE 665


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/667 (36%), Positives = 366/667 (54%), Gaps = 73/667 (10%)

Query: 101 ALKVFLKMLNE-GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           A+K+F +M  + G+  D  S   +L A A       G QVHG   + G   D FV   +V
Sbjct: 214 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVV 273

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE------------ 207
            MY  CG + +A  +F++M  +D+V W+ M+ GY Q G FD+ L LFE            
Sbjct: 274 DMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVV 333

Query: 208 -----------------------EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
                                  +M++   EP+ + L  +LS C+ AG L +G+  H   
Sbjct: 334 TWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHA 393

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           I   + LD +                            +L+V  A++  YS+    + AR
Sbjct: 394 IKWILNLDENDPG------------------------DDLMVINALIDMYSKCKSPKAAR 429

Query: 305 LIFDQMVEKD--LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS---- 358
            +FD +  KD  ++ W+ +I G A++    EAL+LF++M    ++PD   M +  +    
Sbjct: 430 AMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQM----LQPDNFVMPNAFTISCA 485

Query: 359 --ACAHLGVLDQAQRIHLYIDKNAF-GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
             ACA LG L   ++IH Y+ +N F    L V N +IDMY+K G +++AR VF+ M +RN
Sbjct: 486 LMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRN 545

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
            +SWTS++  + +HG    AL  F +M+   + P+GVTF+ VLYACSH+G+VD+G   F 
Sbjct: 546 GVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFN 605

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
            M  ++ + P  EHY CMVDL  RA  L EA+EL+  MP  P   +W +L++ACRV+  +
Sbjct: 606 GMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANV 665

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           EL E+AA QLL+L+  +DG+  LLSNIYA  + W+DV  +R  MK  GI K   CS ++ 
Sbjct: 666 ELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQG 725

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
                 F   D SH  + QIY+ L +++  +K  GYVPD   AL D++DEEK +++  HS
Sbjct: 726 RKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHS 785

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLAL YG++++   + IRI KNLR C DCH+    +S +   EI++RD +RFHH+K+G 
Sbjct: 786 EKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGS 845

Query: 716 CSCKDYW 722
           CSC+ YW
Sbjct: 846 CSCRGYW 852



 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 187/589 (31%), Positives = 305/589 (51%), Gaps = 44/589 (7%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQT-HAQILKLSHSHHSQNSLLLKLL------LTSFS 58
           +P  PL   T+   S+ SS T +  T   Q   L+ +      LL++ L      + S  
Sbjct: 9   KPKPPLLFLTTFFFSTASSTTDLTSTLFHQCKSLASAELIHQQLLVQGLPHDPTHIISMY 68

Query: 59  LPTTTPSSLYYALSIFSQIPAPPSRV--SNKFIRAISWSHRPKHALKVFLKMLNEGLTID 116
           L   +P+    ALS+  ++      V   N+ IR        +  L+++ +M   G   D
Sbjct: 69  LTFNSPAK---ALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPD 125

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
            ++FP +LKA         G  VH +    GF  + FV  GLV MYG CG   +AR +FD
Sbjct: 126 HYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFD 185

Query: 177 KMSYR---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACSRAG 232
           +M  R   D+V W+ ++  Y Q G     + +FE M     + PD + L  +L AC+  G
Sbjct: 186 EMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVG 245

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
             S G+ VH + + + +  D  + + ++ MYA CG M+ A  +F+++ +K++V   AMV+
Sbjct: 246 AWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVT 305

Query: 293 GYSRAGQVEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
           GYS+ G+ +DA  +F+++    +E +++ WSA+I+GYA+     EAL +F +M++CG +P
Sbjct: 306 GYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEP 365

Query: 349 DKVTMLSVISACAHLGVLDQAQRIH-------LYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
           + VT++S++S CA  G L   +  H       L +D+N  G DL V NA+IDMY+KC S 
Sbjct: 366 NVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSP 425

Query: 402 ESAREVFERM--RRRNVISWTSMINAFAIHGDARNALIFFNKM--KDESIDPNGVTFIGV 457
           ++AR +F+ +  + R+V++WT +I   A HG+A  AL  F++M   D  + PN  T    
Sbjct: 426 KAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCA 485

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEH-----YGCMVDLFGRANLLREALELVET 512
           L AC+  G +  GR+I A     Y +  ++E        C++D++ ++  +  A  + + 
Sbjct: 486 LMACARLGALRFGRQIHA-----YVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDN 540

Query: 513 MPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALVLL 559
           M    N V W SLM    +HG  E  L  F   Q + L PD    +V+L
Sbjct: 541 M-HQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVL 588



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 144/320 (45%), Gaps = 20/320 (6%)

Query: 8   TKPLTLPTSTAISSCS---SLTHMKQTHAQ----ILKLSHSHHSQNSLLLKLLLTSFSLP 60
           ++P  +   + +S C+   +L H K+TH      IL L  +    + +++  L+  +S  
Sbjct: 363 SEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYS-K 421

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHR---PKHALKVFLKML--NEGLTI 115
             +P +   A ++F  IP P  R    +   I  + +      AL++F +ML  +  +  
Sbjct: 422 CKSPKA---ARAMFDLIP-PKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMP 477

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDP-FVQTGLVGMYGACGKILDARLM 174
           + F+    L A AR   L  G Q+H    +  F S   FV   L+ MY   G +  AR++
Sbjct: 478 NAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVV 537

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           FD M  R+ V W+ ++ GY  +G  +E L +F EM+   + PD +    +L ACS +G +
Sbjct: 538 FDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMV 597

Query: 235 SYG-EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVS 292
             G    +    D  V   A   + ++ + +  G +D A  L   + +K    V  A++S
Sbjct: 598 DQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLS 657

Query: 293 GYSRAGQVEDARLIFDQMVE 312
                  VE      +Q++E
Sbjct: 658 ACRVYANVELGEYAANQLLE 677


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/610 (38%), Positives = 350/610 (57%), Gaps = 37/610 (6%)

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +F  ++ + A+   L  G+ VH      GF  DPF+ T L+ MY   G I  A  +FD+ 
Sbjct: 80  TFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDET 139

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS----RAGNL 234
             R I  W+ +       G   E+L+L+ +M       D    + +L AC         L
Sbjct: 140 RERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPL 199

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             G+ +H  I+ +    + H+ +TL+ +YA  G +  A  +F  +  KN V         
Sbjct: 200 RKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFV--------- 250

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM--QVCGMKPDKVT 352
                                  WSAMI+ +A+N  P +AL+LF  M  + C   P+ VT
Sbjct: 251 ----------------------SWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVT 288

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           M++++ ACA L  L+Q + IH YI +      L V NA+I MY +CG +   + VF+ M+
Sbjct: 289 MVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMK 348

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
           +R+V+SW S+I+ + +HG  + A+  F  M  + + P+ ++FI VL ACSHAGLV+EG+ 
Sbjct: 349 KRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKI 408

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
           +F SM ++Y I P  EHY CMVDL GRAN L EA++L+E M F P   +WGSL+ +CR+H
Sbjct: 409 LFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIH 468

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
             +ELAE A+  L +L+P + G  VLL++IYA+ K W +   + K ++ RG+ K   CS 
Sbjct: 469 CNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSW 528

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652
           IE+  +VY F++ D  + Q ++I+  L ++ +E+K  GYVP  +  L DL++EEK  ++L
Sbjct: 529 IEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVL 588

Query: 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712
            HSEKLA+ +GLI++ K   IRI KNLR+CEDCH   K +SK   REI++RD  RFHH++
Sbjct: 589 GHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFR 648

Query: 713 DGVCSCKDYW 722
           DGVCSC DYW
Sbjct: 649 DGVCSCGDYW 658



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 150/326 (46%), Gaps = 43/326 (13%)

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           P +     ++ +C++  +LSYG  VH  ++D+    D  L + LI MY   G +D A   
Sbjct: 76  PTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRA--- 132

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
                LK                       +FD+  E+ +  W+A+    A   H +E L
Sbjct: 133 -----LK-----------------------VFDETRERTIYVWNALFRALAMVGHGKELL 164

Query: 336 KLFNEMQVCGMKPDKVTMLSVISAC--AHLGV--LDQAQRIHLYIDKNAFGGDLRVNNAI 391
            L+ +M   G   D+ T   V+ AC  + L V  L + + IH +I ++ +  ++ V   +
Sbjct: 165 DLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTL 224

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID--P 449
           +D+YAK GS+  A  VF  M  +N +SW++MI  FA +     AL  F  M  E+ +  P
Sbjct: 225 LDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVP 284

Query: 450 NGVTFIGVLYACSHAGLVDEGREIFASMTNEY--NIPPKYEHYGCMVDLFGRANLLREAL 507
           N VT + +L AC+    +++G+ I   +      +I P       ++ ++GR   +    
Sbjct: 285 NSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPV---LNALITMYGRCGEVLMGQ 341

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHG 533
            + + M    +VV W SL++   +HG
Sbjct: 342 RVFDNMK-KRDVVSWNSLISIYGMHG 366



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 167/377 (44%), Gaps = 57/377 (15%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           AL +F +       V N   RA++     K  L ++++M   G   DRF++  +LKA   
Sbjct: 132 ALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVV 191

Query: 130 AE----GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           +E     L +G ++H    + G+ ++  V T L+ +Y   G +  A  +F  M  ++ V 
Sbjct: 192 SELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVS 251

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEM--KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           WS MI  + +N +  + L LF+ M  +  N  P+ + +  +L AC+    L  G+ +H +
Sbjct: 252 WSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGY 311

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           I+   +     + + LITMY  CG + M + +FD +  +++V   +++S Y   G  + A
Sbjct: 312 ILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKA 371

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
             IF+ M+ +                               G+ P  ++ ++V+ AC+H 
Sbjct: 372 IQIFENMIHQ-------------------------------GVSPSYISFITVLGACSHA 400

Query: 364 GVLDQAQ----------RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR- 412
           G++++ +          RIH  ++  A          ++D+  +   L  A ++ E M  
Sbjct: 401 GLVEEGKILFESMLSKYRIHPGMEHYA---------CMVDLLGRANRLGEAIKLIEDMHF 451

Query: 413 RRNVISWTSMINAFAIH 429
                 W S++ +  IH
Sbjct: 452 EPGPTVWGSLLGSCRIH 468



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 21  SCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAP 80
           S   L   K+ HA IL+  H + +   ++  LL            S+ YA S+F  +P  
Sbjct: 195 SVCPLRKGKEIHAHILR--HGYEANIHVMTTLLDVYAKF-----GSVSYANSVFCAMPTK 247

Query: 81  PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI--DRFSFPPILKAIARAEGLLEGMQ 138
                +  I   + +  P  AL++F  M+ E      +  +   +L+A A    L +G  
Sbjct: 248 NFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKL 307

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +HG   +    S   V   L+ MYG CG++L  + +FD M  RD+V W+ +I  Y  +G 
Sbjct: 308 IHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGF 367

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
             + + +FE M    V P  +    +L ACS AG +  G+ + E
Sbjct: 368 GKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFE 411



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 11/233 (4%)

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           +I    +  + ++AL L      C   P + T   +I +CA    L     +H  +  + 
Sbjct: 53  LIQSLCKGGNLKQALHLL----CCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSG 108

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
           F  D  +   +I+MY + GS++ A +VF+  R R +  W ++  A A+ G  +  L  + 
Sbjct: 109 FDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYI 168

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGL----VDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
           +M       +  T+  VL AC  + L    + +G+EI A +   +           ++D+
Sbjct: 169 QMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHIL-RHGYEANIHVMTTLLDV 227

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           + +   +  A  +   MP   N V W S M AC    E+ +      QL+  +
Sbjct: 228 YAKFGSVSYANSVFCAMP-TKNFVSW-SAMIACFAKNEMPMKALELFQLMMFE 278


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/655 (35%), Positives = 368/655 (56%), Gaps = 12/655 (1%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           +AL +F  +P       N  + A+S S R + AL V + M N G+ +D  ++   L A A
Sbjct: 246 HALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACA 305

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           +   L  G Q+H    +     DP+V + +V +Y  CG   +AR +F  +  R+ V W+V
Sbjct: 306 KLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTV 365

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I G+ Q G F E L LF +M+   +  D+  L+ I+S CS   ++     +H   + + 
Sbjct: 366 LIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSG 425

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
                 + ++LI+MYA CG +  A+ +F  +  +++V  T M++ YS+ G +  AR  FD
Sbjct: 426 HTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFD 485

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPDKVTMLSVISACAHLGVLD 367
            M  +++I W+AM+  Y ++   ++ LK+++ M     + PD VT +++   CA +G   
Sbjct: 486 GMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANK 545

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
              +I  +  K     D  V NA+I MY+KCG +  AR++F+ + R++++SW +MI  ++
Sbjct: 546 LGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYS 605

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            HG  + A+  F+ M  +   P+ ++++ VL +CSH+GLV EG+  F  +  ++N+ P  
Sbjct: 606 QHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGL 665

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
           EH+ CMVDL  RA  L EA  L++ MP  P   +WG+L++AC+ HG  ELAE AAK L  
Sbjct: 666 EHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFD 725

Query: 548 LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
           LD    G  +LL+ IYA   +  D  ++RK M+++GI K    S +E+ N+V+ F   D 
Sbjct: 726 LDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDV 785

Query: 608 SHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS 667
           SH Q   I EKL+E++ ++   GYV            E  R  I  HSEKLA+ +G+++ 
Sbjct: 786 SHPQVIAIREKLDELMEKIAQLGYV----------RTESLRSEI-HHSEKLAVAFGIMNL 834

Query: 668 KKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
                I I+KNLR+C DCH  IKL+S V  RE VIRD  RFHH+K G CSC DYW
Sbjct: 835 PAWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFKGGSCSCGDYW 889



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 220/458 (48%), Gaps = 69/458 (15%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPIL 124
           SL  A  +F ++P       N  +     S R   A++ F+ M   G ++ + F+F   +
Sbjct: 110 SLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAM 169

Query: 125 KAIARAEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI--------------- 168
           K+   A G  E  +Q+ GL TK GF  DP V TG+V M+  CG +               
Sbjct: 170 KSCG-ALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTV 228

Query: 169 ---------------LDARL-MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS 212
                          +D  L +F+ M  RD+V W++M+    Q+G   E L++  +M   
Sbjct: 229 FCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNR 288

Query: 213 NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
            V  D    +  L+AC++  +L +G+ +H  +I +   +D ++ S ++ +YA CGC   A
Sbjct: 289 GVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEA 348

Query: 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
           + +F  +  +N V  T ++ G+ + G                  C+S             
Sbjct: 349 RRVFSSLRDRNTVSWTVLIGGFLQYG------------------CFS------------- 377

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
           E+L+LFN+M+   M  D+  + ++IS C++   +  A+++H    K+     + ++N++I
Sbjct: 378 ESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLI 437

Query: 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
            MYAKCG+L++A  +F  M  R+++SWT M+ A++  G+   A  FF+ M   ++    +
Sbjct: 438 SMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNV----I 493

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
           T+  +L A    G  ++G +++++M  E ++ P +  Y
Sbjct: 494 TWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTY 531



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 155/303 (51%), Gaps = 1/303 (0%)

Query: 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE-PDEMV 220
           Y   G + DA  +F +M  RD+  W+ ++ GY+Q+G F + +  F  M+ S    P+   
Sbjct: 105 YAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFT 164

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
               + +C   G       +   +       D  + + ++ M+  CG +D A   F ++ 
Sbjct: 165 FGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIE 224

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
              +    +M++GY+++  V+ A  +F+ M E+D++ W+ M+S  +++   +EAL +  +
Sbjct: 225 RPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVD 284

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M   G++ D  T  S ++ACA L  L   +++H  + ++    D  V +A++++YAKCG 
Sbjct: 285 MHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGC 344

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
            + AR VF  +R RN +SWT +I  F  +G    +L  FN+M+ E +  +      ++  
Sbjct: 345 FKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISG 404

Query: 461 CSH 463
           CS+
Sbjct: 405 CSN 407



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 192/433 (44%), Gaps = 69/433 (15%)

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF-DKV 279
           L+  L +C   G L+   A+H  ++   +A    LQ+TL+  Y +CG +  A+GL    +
Sbjct: 31  LADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDI 90

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
              N++    M++GY++ G + DA  +F +M  +D+  W+ ++SGY ++    +A++ F 
Sbjct: 91  TEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFV 150

Query: 340 EMQVCGMK-PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            M+  G   P+  T    + +C  LG  + A ++   + K  F GD  V   I+DM+ +C
Sbjct: 151 SMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRC 210

Query: 399 GSLESAR-------------------------------EVFERMRRRNVISWTSMINAFA 427
           G+++ A                                E+FE M  R+V+SW  M++A +
Sbjct: 211 GAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALS 270

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
             G AR AL     M +  +  +  T+   L AC+    +  G+++ A +         Y
Sbjct: 271 QSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPY 330

Query: 488 EHYGCMVDLFGRANLLREALELVETM----PFAPNVVIWGSLMAAC---------RVHGE 534
                MV+L+ +    +EA  +  ++      +  V+I G L   C         ++  E
Sbjct: 331 VA-SAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAE 389

Query: 535 I-ELAEFA----------------AKQL--LQLDPDHDGALVL---LSNIYAKDKRWQDV 572
           +  + +FA                A+QL  L L   H  A+V+   L ++YAK    Q+ 
Sbjct: 390 LMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNA 449

Query: 573 GELRKSMKERGIL 585
             +  SM+ER I+
Sbjct: 450 ESIFSSMEERDIV 462


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/653 (34%), Positives = 375/653 (57%), Gaps = 33/653 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +FS++    S   N  I   +   R + ++K+F+ M+ +G   D  S    ++A  +
Sbjct: 276 ARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACGQ 334

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           +  L  G  VH      GF  D      L+ MY  CG +L A+ +FD    +D V W+ +
Sbjct: 335 SGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSL 394

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I+GY Q+G + E L  F+ MKM   +PD +    +LS  S+  +++ G  +H        
Sbjct: 395 INGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIH-------- 445

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                               D+ K  F+      L++  +++  Y++ G+++D   +F  
Sbjct: 446 -------------------CDVIKFGFEA----ELIIGNSLLDVYAKCGEMDDLLKVFSY 482

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M   D+I W+ +I+     +      ++ NEM+  G+ PD+ T+L ++  C+ L V  Q 
Sbjct: 483 MSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQG 542

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + IH YI K+ F  ++ + NA+I+MY+KCGSLE+  +VF+ M+ ++V++WT++I+AF ++
Sbjct: 543 KEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMY 602

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G+ + AL  F  M+   + P+ V FI  ++ACSH+G+V EG   F  M  +YN+ P+ EH
Sbjct: 603 GEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEH 662

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           Y C+VDL  R+ LL +A E + +MP  P+  +WG+L++ACR  G   +A+  +K++L+L+
Sbjct: 663 YACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELN 722

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
            D  G  VL+SNIYA   +W  V  +R SMK +G+ KE   S IE+   VY F T D+S 
Sbjct: 723 SDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSF 782

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
           +Q D++ + L  ++  +   GYV D+  AL D+E+++KR+++  HSE+LA+ +GL+++K 
Sbjct: 783 EQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKP 842

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            S + ++KNLRVC DCH   K ++K+  REI++RD  RFH +KDG CSC D+W
Sbjct: 843 GSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 230/460 (50%), Gaps = 36/460 (7%)

Query: 70  ALSIFSQI-PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           ++S+F  I P     + N  IRA++ +     AL  + +M  + L  D F+FP ++ + A
Sbjct: 73  SVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCA 132

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           R   L  G  VH    ++GF SD ++   L+ MY     + +AR +F++MS RD V W+ 
Sbjct: 133 RILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNS 192

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I GY  NG +++ L+++ + +M+ + PD   +S +L AC     +  G AVH  I    
Sbjct: 193 LISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIG 252

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           +A D  + + L++MY     +  A+ +F K+ +K+ V    M+ GY++ G+ E       
Sbjct: 253 IAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHE------- 305

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
                                    ++KLF +M + G  PD +++ S I AC   G L  
Sbjct: 306 ------------------------ASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQV 340

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            + +H Y+  + F  D    N +IDMYAKCG L +A+EVF+  + ++ ++W S+IN +  
Sbjct: 341 GKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQ 400

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
            G  +  L  F  MK E   P+ VTF+ +L   S    +++GR I   +  ++    +  
Sbjct: 401 SGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVI-KFGFEAELI 458

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
               ++D++ +   + + L++   M  A +++ W +++A+
Sbjct: 459 IGNSLLDVYAKCGEMDDLLKVFSYMS-AHDIISWNTVIAS 497


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/624 (37%), Positives = 361/624 (57%), Gaps = 31/624 (4%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + +LK+F +M   G   + F+F  +LKA    E    G  VHG   K  +  + FV   L
Sbjct: 228 EESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVEL 287

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + +Y   G + DA  +F++M   D++PWS MI  Y Q+   +E + +F  M+   V P++
Sbjct: 288 IDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQ 347

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
             L+ +L AC+   +L  G  +H  ++   V LD                          
Sbjct: 348 FTLASLLQACASLVDLQLGNQIHCHVV--KVGLDM------------------------- 380

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
               N+ VS A++  Y++ G++E++  +F +      + W+ +I GY +  + ++AL LF
Sbjct: 381 ----NVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILF 436

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            +M  C ++  +VT  SV+ ACA +  L+   +IH    K  +  +  V NA+IDMYAKC
Sbjct: 437 KDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKC 496

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G+++ AR VF+ +R  + +SW +MI+ +++HG    AL  F  M +    P+ VTF+G+L
Sbjct: 497 GNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGIL 556

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            ACS+AGL+D G+  F SM  EY+I P  EHY CMV L GR+  L +A +LV  +PF P+
Sbjct: 557 SACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPS 616

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
           V++W +L++AC +H ++EL   +A+++L+++P+ +   VLLSNIYA  +RW +V  +R S
Sbjct: 617 VMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTS 676

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           MK +GI KE   S IE    V+ F   D SH  T  I   L  +  + +  GYVPD  S 
Sbjct: 677 MKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLEWLNMKARNEGYVPDFSSV 736

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           L+D+ED +K + +  HSE+LAL YGLI +   S +RI+KNLR+C DCH  IKL+SK+  R
Sbjct: 737 LLDVEDVDKEQRLWVHSERLALAYGLIRTPSISPLRIIKNLRICADCHAAIKLISKIVQR 796

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           +I+IRD  RFHH+ +G+CSC DYW
Sbjct: 797 DIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/507 (28%), Positives = 245/507 (48%), Gaps = 44/507 (8%)

Query: 29  KQTHAQILKLSHSHH-SQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNK 87
           K  H +I+K  +      N++LL   +   SLP         A  +F ++P   +     
Sbjct: 64  KYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPD--------AAKLFDEMPDRNTVSFVT 115

Query: 88  FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
            I+  S   R   A+ +F ++  EG  ++ F F  +LK +  AE    G  VH    KLG
Sbjct: 116 LIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLG 175

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207
           F SD FV T L+  Y  CG    AR +FD + Y+D+V W+ M+  Y +N  F+E L LF 
Sbjct: 176 FDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFS 235

Query: 208 EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
            M++   +P+    + +L AC      + G+AVH                         G
Sbjct: 236 RMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVH-------------------------G 270

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
           C       F    L+ L V   ++  Y ++G V+DA  +F++M + D+I WS MI+ YA+
Sbjct: 271 CA------FKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQ 324

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
           +   +EA+++F  M+   + P++ T+ S++ ACA L  L    +IH ++ K     ++ V
Sbjct: 325 SEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFV 384

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
           +NA++DMYAKCG +E++ ++F        +SW ++I  +   G+   ALI F  M +  +
Sbjct: 385 SNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQV 444

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG-CMVDLFGRANLLREA 506
               VT+  VL AC+    ++ G +I +       I  K    G  ++D++ +   +++A
Sbjct: 445 QGTEVTYSSVLRACAGIAALEPGSQIHSLSVK--TIYDKNTVVGNALIDMYAKCGNIKDA 502

Query: 507 LELVETMPFAPNVVIWGSLMAACRVHG 533
             LV  M    + V W ++++   VHG
Sbjct: 503 -RLVFDMLREHDQVSWNAMISGYSVHG 528



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 191/435 (43%), Gaps = 37/435 (8%)

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
            + + +  +L++  R      G  +H    K G   D F    L+  Y     + DA  +
Sbjct: 42  FNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKL 101

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           FD+M  R+ V +  +I GY Q   F E + LF  ++    E +  V S +L     A   
Sbjct: 102 FDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWA 161

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             G +VH  +       DA                                V TA++  Y
Sbjct: 162 KLGFSVHACVYKLGFDSDA-------------------------------FVGTALIDCY 190

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
           S  G  E AR +FD +  KD++ W+ M++ Y EN   +E+LKLF+ M++ G KP+  T  
Sbjct: 191 SVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFA 250

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           SV+ AC  L V +  + +H    K ++  +L V   +ID+Y K G ++ A +VFE M + 
Sbjct: 251 SVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKD 310

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD--EGRE 472
           +VI W+ MI  +A    +  A+  F +M+   + PN  T   +L AC  A LVD   G +
Sbjct: 311 DVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQAC--ASLVDLQLGNQ 368

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
           I   +  +  +         ++D++ +   +  +L+L    P   +V  W +++      
Sbjct: 369 IHCHVV-KVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVS-WNTVIVGYVQA 426

Query: 533 GEIELAEFAAKQLLQ 547
           G  E A    K +L+
Sbjct: 427 GNGEKALILFKDMLE 441



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 137/323 (42%), Gaps = 33/323 (10%)

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           L +    S+ E +  +   +L +C R G+ + G+ +H  II     LD    + L+  Y 
Sbjct: 31  LAQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYV 90

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
               +  A  LFD++  +N V    ++ GYS+  +                         
Sbjct: 91  KYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRF------------------------ 126

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
                   EA+ LF+ +Q  G + +     +V+              +H  + K  F  D
Sbjct: 127 -------SEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSD 179

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
             V  A+ID Y+ CG  E AR+VF+ +  ++++SWT M+  +  +     +L  F++M+ 
Sbjct: 180 AFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRI 239

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
               PN  TF  VL AC    + + G+ +         +   +     ++DL+ ++  + 
Sbjct: 240 VGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVE-LIDLYIKSGDVD 298

Query: 505 EALELVETMPFAPNVVIWGSLMA 527
           +AL++ E MP   +V+ W  ++A
Sbjct: 299 DALQVFEEMP-KDDVIPWSFMIA 320


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/531 (41%), Positives = 330/531 (62%), Gaps = 7/531 (1%)

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           QN  F   L+L+  M++  V PD      +L + +       G  +H  I+   +A D  
Sbjct: 40  QNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINTPHR---GRQLHAQILLLGLANDPF 96

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           +Q++LI MY++CG    A+  FD++   +L    A++   ++AG +  AR +FDQM EK+
Sbjct: 97  VQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKN 156

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQV---CGMKPDKVTMLSVISACAHLGVLDQAQR 371
           +I WS MI GY      + AL LF  +Q      ++P++ TM SV+SACA LG L   + 
Sbjct: 157 VISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKW 216

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHG 430
           +H YIDK     D+ +  ++IDMYAKCGS+E A+ +F+ +   ++V++W++MI AF++HG
Sbjct: 217 VHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHG 276

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
            +   L  F +M ++ + PN VTF+ VL AC H GLV EG E F  M NEY + P  +HY
Sbjct: 277 LSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHY 336

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
           GCMVDL+ RA  + +A  +V++MP  P+V+IWG+L+   R+HG++E  E A  +LL+LDP
Sbjct: 337 GCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDP 396

Query: 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK 610
            +  A VLLSN+YAK  RW++V  LR  M+ RGI K   CS +E++  + EF   D SH 
Sbjct: 397 ANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHP 456

Query: 611 QTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD 670
           +   +Y  L+E++  L+  GY  +    L+DL++E K   +  HSEKLA+ Y  + +   
Sbjct: 457 ELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEFALSLHSEKLAIAYCFLRTSPG 516

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           + IRIVKNLR+C DCH  IK++SK + REI++RD  RFHH+K+G+CSCKDY
Sbjct: 517 TTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRFHHFKNGLCSCKDY 567



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 194/416 (46%), Gaps = 83/416 (19%)

Query: 78  PAPPSRVSNKFIRAISWS--HRPKH--ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           P   S V N  IRA + S    P    AL ++L+M    +  D  +FP +L++I      
Sbjct: 20  PNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINTPH-- 77

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK-------------------------- 167
             G Q+H     LG  +DPFVQT L+ MY +CG                           
Sbjct: 78  -RGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHAN 136

Query: 168 -----ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM---SNVEPDEM 219
                I  AR +FD+M  ++++ WS MI GY   G +   L+LF  ++    S + P+E 
Sbjct: 137 AKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEF 196

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
            +S +LSAC+R G L +G+ VH +I    + +D  L ++LI MYA CG ++ AK +FD +
Sbjct: 197 TMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNL 256

Query: 280 -LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
              K+++  +AM++ +S  G  E                               E L+LF
Sbjct: 257 GPEKDVMAWSAMITAFSMHGLSE-------------------------------ECLELF 285

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK--NAFGGDLRVNN--AIIDM 394
             M   G++P+ VT ++V+ AC H G++ +      Y  +  N +G    + +   ++D+
Sbjct: 286 ARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNE---YFKRMMNEYGVSPMIQHYGCMVDL 342

Query: 395 YAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449
           Y++ G +E A  V + M    +V+ W +++N   IHGD     I   K+ +  +DP
Sbjct: 343 YSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLE--LDP 396


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/650 (34%), Positives = 382/650 (58%), Gaps = 33/650 (5%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           IF ++    +   N  I   S     + ++K+F++M+N+    D  +   IL+A      
Sbjct: 273 IFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGD 331

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L  G  VH      G+  D      L+ MY  CG +L ++ +F  M  +D V W+ MI+ 
Sbjct: 332 LEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINV 391

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y QNG FDE + LF+ MK ++V+PD +    +LS  ++ G+L  G+ +H           
Sbjct: 392 YIQNGSFDEAMKLFKMMK-TDVKPDSVTYVMLLSMSTQLGDLHLGKELH----------- 439

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
                            D+AK  F+     N+VVS  +V  Y++ G++ D+  +F+ M  
Sbjct: 440 ----------------CDLAKMGFNS----NIVVSNTLVDMYAKCGEMGDSLKVFENMKA 479

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           +D+I W+ +I+    +      L++ + M+  G+ PD  TMLS++  C+ L    Q + I
Sbjct: 480 RDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEI 539

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H  I K     D+ V N +I+MY+KCGSL ++ +VF+ M+ ++V++WT++I+A  ++G+ 
Sbjct: 540 HGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEG 599

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
           + A+  F +M+   I P+ V F+ +++ACSH+GLV+EG   F  M  +Y I P+ EHY C
Sbjct: 600 KKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYAC 659

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           +VDL  R+ LL +A + + +MP  P+  IWG+L++ACR+ G+ E+AE  ++++++L+PD 
Sbjct: 660 VVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDD 719

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
            G  VL+SNIYA   +W  V  +RKS+K RG+ K+  CS +E+ N+VY F T  +  +Q 
Sbjct: 720 TGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQF 779

Query: 613 DQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSC 672
           +++ + L  +   +   GY+ ++   L D++++EKR+++  HSE+LA+ +GL+++K  + 
Sbjct: 780 EEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTP 839

Query: 673 IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           ++++KNLRVCEDCH   K +SK+  RE+++RD  RFH +KDG CSC DYW
Sbjct: 840 LQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 150/527 (28%), Positives = 265/527 (50%), Gaps = 58/527 (11%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
           S A++S ++ T + + H+ I+ L   H    S  L      F  PT++        S+F 
Sbjct: 20  SRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSS-------FSVF- 71

Query: 76  QIPAPPSRVS--NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           ++ +P + V   N  IRA++ +     AL ++ +     L  D ++FP ++ A A   GL
Sbjct: 72  RLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA---GL 128

Query: 134 LE---GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
           L+      +H     +GFGSD ++   L+ MY     +  AR +F++M  RD+V W+ +I
Sbjct: 129 LDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLI 188

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
            GY  NG ++E L ++   +   V PD   +S +L AC   G++  G+ +H  I    + 
Sbjct: 189 SGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIK 248

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
            D  + + L++MY     +   + +FDK++L++ V    M+ GYS+ G  E         
Sbjct: 249 KDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYE--------- 299

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
                                 E++KLF EM V   KPD +T+ S++ AC HLG L+  +
Sbjct: 300 ----------------------ESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGK 336

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
            +H Y+  + +  D   +N +I+MYAKCG+L +++EVF  M+ ++ +SW SMIN +  +G
Sbjct: 337 YVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNG 396

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI---FASMTNEYNIPPKY 487
               A+  F  MK + + P+ VT++ +L   +  G +  G+E+    A M    NI    
Sbjct: 397 SFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVS- 454

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
                +VD++ +   + ++L++ E M  A +++ W +++A+C VH E
Sbjct: 455 ---NTLVDMYAKCGEMGDSLKVFENMK-ARDIITWNTIIASC-VHSE 496



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 2/245 (0%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           +L +F  + A      N  I +   S      L++  +M  EG+T D  +   IL   + 
Sbjct: 470 SLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSL 529

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
                +G ++HG   KLG  SD  V   L+ MY  CG + ++  +F  M  +D+V W+ +
Sbjct: 530 LAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTAL 589

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDNN 248
           I      G   + +  F EM+ + + PD +    I+ ACS +G +  G    H    D  
Sbjct: 590 ISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYK 649

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLIF 307
           +       + ++ + +    +D A+     + LK +  +  A++S    +G  E A  + 
Sbjct: 650 IEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVS 709

Query: 308 DQMVE 312
           ++++E
Sbjct: 710 ERIIE 714


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/650 (35%), Positives = 370/650 (56%), Gaps = 39/650 (6%)

Query: 75  SQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL 134
           S + A  S   N  +R +++      ++ ++  ML  G + D FSFP ILK+ A     +
Sbjct: 11  SAVAAVASTPWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPV 70

Query: 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK--MSYRDIVPWSVMIDG 192
            G Q+H   TK G  ++PFV T L+ MY  CG + DAR +F++   S +  V ++ +I G
Sbjct: 71  SGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISG 130

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y  N    +   +F  MK + V  D + +  ++  C+    L  G ++H   +   +  +
Sbjct: 131 YTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSE 190

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             + ++ ITMY  CG                                VE  R +FD+M  
Sbjct: 191 VAVLNSFITMYMKCG-------------------------------SVEAGRRLFDEMPV 219

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           K LI W+A+ISGY++N    + L+L+ +M+  G+ PD  T++SV+S+CAHLG       +
Sbjct: 220 KGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEV 279

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
              ++ N F  ++ V+NA I MYA+CG+L  AR VF+ M  ++++SWT+MI  + +HG  
Sbjct: 280 GKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMG 339

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
              L+ F+ M    I P+G  F+ VL ACSH+GL D+G E+F +M  EY + P  EHY C
Sbjct: 340 EIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSC 399

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           +VDL GRA  L EA+E +E+MP  P+  +WG+L+ AC++H  +++AE A  ++++ +P++
Sbjct: 400 LVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNN 459

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
            G  VL+SNIY+  K  + +  +R  M+ER   K+   S +E    V+ FL  DRSH+QT
Sbjct: 460 IGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQT 519

Query: 613 DQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSC 672
           ++++  L+E+ +       V ++   +     EE       HSE+LA+ +G+++S   + 
Sbjct: 520 EEVHRMLDELETS------VMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTE 573

Query: 673 IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           I ++KNLRVCEDCH F+K VSK+  R+ V+RD +RFH++KDGVCSCKDYW
Sbjct: 574 ILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 82/180 (45%)

Query: 53  LLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG 112
           +L SF        S+     +F ++P       N  I   S +      L+++ +M + G
Sbjct: 193 VLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSG 252

Query: 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR 172
           +  D F+   +L + A       G +V  L    GF  + FV    + MY  CG +  AR
Sbjct: 253 VCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKAR 312

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
            +FD M  + +V W+ MI  Y  +G+ +  L LF++M    + PD  V   +LSACS +G
Sbjct: 313 AVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSG 372


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/550 (42%), Positives = 337/550 (61%), Gaps = 4/550 (0%)

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAI-ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           L+V++ ML  G   D ++FPP+LKA+ A AE    G  VH    K G   +  V + LV 
Sbjct: 3   LRVYVGMLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVL 62

Query: 161 MYGACGKILDARLMFDKMSYRD---IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           MY A G    AR + D    R     V W+ +I G+ ++  F      F +M  + V P 
Sbjct: 63  MYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPT 122

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
            +    +LSAC +   +  G  VH+ ++ + V  D  + + LI MYA C  MD A  LF+
Sbjct: 123 PVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFE 182

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
            + ++N V  T+++SG+ R GQV+ AR +FD M E+D + W+AMI GY +    +EAL++
Sbjct: 183 GMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEM 242

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F EMQ   ++ D+ TM+SV++ACA LG L+  +   +Y+ ++    D  V NA++DMY+K
Sbjct: 243 FREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSK 302

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CGS++ A  VF+ M  R+  +WT++I   A++G    A+  F +M      P+ VTFIGV
Sbjct: 303 CGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGV 362

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L AC+HAGLVD+GR+ F SMT  Y I P   H+GC++DL GRA  L+EALE +  MP  P
Sbjct: 363 LTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRP 422

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
           N  IWG+L+AACRVHG  E+ + AA+ LL+LD ++    +LLSN+YAK  RW+DV  LR+
Sbjct: 423 NSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWEDVRRLRQ 482

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            + E+GI KE  CS IEMN  ++EF+  DRSH  + +IY KL++V+++LK AGYVPD+  
Sbjct: 483 VIMEKGIKKEPGCSLIEMNGTIHEFIAGDRSHPMSKEIYSKLDKVLTDLKDAGYVPDLTE 542

Query: 638 ALVDLEDEEK 647
             V +  EEK
Sbjct: 543 IFVQVTREEK 552



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++F  +P   +      I     + + + AL++F +M    +  D F+   ++ A A+
Sbjct: 208 ARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQ 267

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G       ++ G   D FV   LV MY  CG I  A  +F +M  RD   W+ +
Sbjct: 268 LGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAV 327

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           I G   NG  +E +N+F  M      PDE+    +L+AC+ AG +  G
Sbjct: 328 ILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKG 375


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/654 (35%), Positives = 368/654 (56%), Gaps = 63/654 (9%)

Query: 101 ALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           A++V+  ML +  + ++R +F  +L   ++   +  G Q++G   K GFGSD FV + LV
Sbjct: 121 AVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLV 180

Query: 160 GMYGACGKILDARLMFDKMSYRDIV-------------------------------PWSV 188
            MY   G I DA+  FD+M  R++V                                W++
Sbjct: 181 DMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTI 240

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI G  QNGL  E L++F EM+++    D+     +L+AC     L  G+ +H ++I  +
Sbjct: 241 MITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTD 300

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
                                             N+ V +A+V  YS+   ++ A  +F 
Sbjct: 301 HK-------------------------------DNVFVGSALVDMYSKCRSIKSAETVFK 329

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           +M +K++I W+AM+ GY +N   +EA+K+F EMQ  G++PD  T+ SVIS+CA+L  L++
Sbjct: 330 RMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEE 389

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
             + H     +     + V+NA+I +Y KCGS E++  +F  M  R+ +SWT+++  +A 
Sbjct: 390 GAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQ 449

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
            G A   +  F +M    + P+GVTFIGVL ACS AGLV++G + F SM  E+ I P  +
Sbjct: 450 FGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVD 509

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           H  C++DL GRA  L EA   +  MP  P+VV W +L+++CRVHG++E+ ++AA  L+ L
Sbjct: 510 HCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIAL 569

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           +P +  + VLLS++YA   +W  V +LR+ M+++ + KE   S I+   +V+ F   D+S
Sbjct: 570 EPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQS 629

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
                QIY +L ++  ++   GYVPD+ S L D+E+ EK +++  HSEKLA+ +GLI   
Sbjct: 630 SPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVP 689

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
               IR++KNLRVC DCHN  K +SK+  REI++RD  RFH +KDG CSC D+W
Sbjct: 690 PGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 193/386 (50%), Gaps = 32/386 (8%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +  +LK    ++   +  ++H L  K     + F+   L+  Y   G +  A  +FD + 
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEM------------------------------ 209
             ++  W+ ++  Y + GL  ++  +F  M                              
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 210 --KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
             K + +  + +  S +L  CS+   +  G  ++  I+      D  + S L+ MY   G
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
            +  AK  FD++  +N+V+   M++G  R G +E+++ +F  + E+D I W+ MI+G  +
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQ 247

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
           N   +EAL +F EM++ G   D+ T  SV++AC  L  L + ++IH Y+ +     ++ V
Sbjct: 248 NGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFV 307

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
            +A++DMY+KC S++SA  VF+RM ++NVISWT+M+  +  +G +  A+  F +M+   +
Sbjct: 308 GSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGV 367

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREI 473
           +P+  T   V+ +C++   ++EG + 
Sbjct: 368 EPDDFTLGSVISSCANLASLEEGAQF 393



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 44/370 (11%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + AL +F +M   G  +D+F+F  +L A      L EG Q+H    +     + FV + L
Sbjct: 252 REALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSAL 311

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           V MY  C  I  A  +F +M  ++++ W+ M+ GY QNG  +E + +F EM+ + VEPD+
Sbjct: 312 VDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDD 371

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
             L  ++S+C+   +L  G   H   + + +     + + LIT+Y  CG  + +  LF +
Sbjct: 372 FTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTE 431

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           + +++ V  TA+++GY++ G+                                 E + LF
Sbjct: 432 MNIRDEVSWTALLAGYAQFGKA-------------------------------NETIGLF 460

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQA-QRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
             M   G+KPD VT + V+SAC+  G++++  Q     I ++     +     IID+  +
Sbjct: 461 ERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGR 520

Query: 398 CGSLESAREVFERMR-RRNVISWTSMINAFAIHGD------ARNALIFFNKMKDESIDPN 450
            G LE AR     M    +V+ W +++++  +HGD      A ++LI       E  +P 
Sbjct: 521 AGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIAL-----EPQNPA 575

Query: 451 GVTFIGVLYA 460
               +  LYA
Sbjct: 576 SYVLLSSLYA 585



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 163/367 (44%), Gaps = 42/367 (11%)

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           + +L  C  + N +  + +H  I+      +  L + LIT Y   G +  A  +FD +  
Sbjct: 9   ASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQ 68

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
            NL     ++S YS+ G +   + IF+ M  +D + W+  ISGYA      +A++++  M
Sbjct: 69  PNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLM 128

Query: 342 -QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
            +   M  +++T  +++  C+    +D  ++I+  I K  FG D+ V + ++DMY K G 
Sbjct: 129 LKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGL 188

Query: 401 LESAREVFERMRRRNV-------------------------------ISWTSMINAFAIH 429
           +  A+  F+ M  RNV                               ISWT MI     +
Sbjct: 189 IYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQN 248

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G  R AL  F +M+      +  TF  VL AC     + EG++I A +    +    +  
Sbjct: 249 GLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVG 308

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL- 548
              +VD++ +   ++ A  + + MP   NV+ W +++     +G+   +E A K   ++ 
Sbjct: 309 -SALVDMYSKCRSIKSAETVFKRMP-QKNVISWTAMLVG---YGQNGFSEEAVKIFFEMQ 363

Query: 549 ----DPD 551
               +PD
Sbjct: 364 RNGVEPD 370


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/606 (39%), Positives = 348/606 (57%), Gaps = 42/606 (6%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +LK       L EG  +H L     F  D  +Q  L+ +Y  CG ++ AR +FD+MS RD
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG--NLSYGEAV 240
           +V W+ +I GY Q+    + L L  EM    ++P++  L+ +L A S  G  ++  G  +
Sbjct: 81  VVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQL 140

Query: 241 HEFII----DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           H   +    D+NV             Y +C  +DM                      Y+R
Sbjct: 141 HGLCLRYGYDSNV-------------YVSCAILDM----------------------YAR 165

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
              +E+A+LIFD MV K+ + W+A+I+GYA      +A  LF+ M    +KP   T  SV
Sbjct: 166 CHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSV 225

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           + ACA +G L+Q + +H  + K        V N ++DMYAK GS+E A++VF+R+ +R+V
Sbjct: 226 LCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDV 285

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           +SW SM+  ++ HG  + AL  F +M    I PN +TF+ VL ACSHAGL+DEGR  F  
Sbjct: 286 VSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYF-D 344

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           M  +YN+ P+  HY  MVDL GRA  L  A++ +  MP  P   +WG+L+ ACR+H  +E
Sbjct: 345 MMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNME 404

Query: 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMN 596
           L  +AA+ + +LD  + G  VLL NIYA   RW D  ++RK MKE G+ KE ACS +EM 
Sbjct: 405 LGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEME 464

Query: 597 NEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSE 656
           NEV+ F+  D +H Q  +I+    ++  ++K  GYVPD    L+ ++ +E+   + +HSE
Sbjct: 465 NEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHVLLCMDQQEREAKLQYHSE 524

Query: 657 KLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVC 716
           KLAL + L+++   S IRI KN+R+C DCH+  K VSK+  REI++RD  RFHH+ DG C
Sbjct: 525 KLALAFALLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFCDGAC 584

Query: 717 SCKDYW 722
           SC+DYW
Sbjct: 585 SCEDYW 590



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 178/366 (48%), Gaps = 34/366 (9%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L YA  +F ++ +         I   S   RP+ AL +  +ML  GL  ++F+   +LKA
Sbjct: 66  LVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKA 125

Query: 127 IAR--AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            +   +  +L+G Q+HGL  + G+ S+ +V   ++ MY  C  + +A+L+FD M  ++ V
Sbjct: 126 ASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEV 185

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ +I GY + G  D+   LF  M   NV+P     S +L AC+  G+L  G+ VH  +
Sbjct: 186 SWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALM 245

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           I     L A + +TL+ MYA  G ++ AK +FD++  +++V   +M++GYS+ G      
Sbjct: 246 IKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGL----- 300

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                                      + AL+ F EM    + P+ +T L V++AC+H G
Sbjct: 301 --------------------------GKVALQRFEEMLRTRIAPNDITFLCVLTACSHAG 334

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMI 423
           +LD+ +     + K      +     ++D+  + G L+ A +    M  +   + W +++
Sbjct: 335 LLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALL 394

Query: 424 NAFAIH 429
            A  +H
Sbjct: 395 GACRMH 400


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/626 (38%), Positives = 355/626 (56%), Gaps = 63/626 (10%)

Query: 156 TGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
            GLV  Y   G I +AR +FDKM  R++V W+ M+ GY Q GL DE   LF  M   NV 
Sbjct: 82  NGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVV 141

Query: 216 P---------------------------DEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
                                       D +  + ++      G LS    + + +   N
Sbjct: 142 SWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRN 201

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA----- 303
           V       +++I+ YA    +D+A+ LF+ +  KN V  TAM+ GY+R+G++ +A     
Sbjct: 202 VVA----WTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFK 257

Query: 304 --------------------------RLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                                     R +FDQM EKD   WSA+I  Y       EAL L
Sbjct: 258 AMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALAL 317

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F+ MQ  G++P+  +++S++S C  L  LD  +++H  + ++ F  D+ V++ +I MY K
Sbjct: 318 FSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIK 377

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CG L + + VF+R   ++++ W S+I  +A HG    AL  F++M      P+ +TFIGV
Sbjct: 378 CGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGV 437

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L AC + G V EG EIF SM ++Y +  K EHY CMVDL GRA  L EA+ L+E MP   
Sbjct: 438 LSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEA 497

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
           + ++WG+L++ACR H  ++LAE AAK+LLQL+P   G  +LLSN+YA   RW+DV ELRK
Sbjct: 498 DAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRK 557

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADR-SHKQTDQIYEKLNEVISELKPAGYVPDIH 636
           +M+ R + K   CS IE++N+V+ F      SH + + I +KL ++ + L+ AGY PD  
Sbjct: 558 TMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLREAGYCPDGS 617

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
             + D+++E+K   +  HSEK+A+ YGL+       IR++KNLRVC DCH+ IKL+++V 
Sbjct: 618 FVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGDCHSAIKLIAQVT 677

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
            REI++RD  RFHH+KDG+CSC+D+W
Sbjct: 678 GREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 183/371 (49%), Gaps = 22/371 (5%)

Query: 170 DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229
           +A+ +FDKM  R+ + W+ ++ GY +NG+  E   +F++M   NV    +  + ++    
Sbjct: 65  EAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNV----VSWTSMVRGYV 120

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
           + G +   E +   + + NV     +   LI      G +D A+ LFD + +K++V ST 
Sbjct: 121 QEGLIDEAELLFWRMPEKNVVSWTVMLGGLI----EDGRVDEARRLFDMIPVKDVVASTN 176

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
           M+ G    G++ +AR IFD+M +++++ W++MISGYA NN    A KLF  M      PD
Sbjct: 177 MIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVM------PD 230

Query: 350 K--VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           K  VT  +++      G +++A  +   +        +   N +I  +   G +  AR V
Sbjct: 231 KNEVTWTAMLKGYTRSGRINEAAELFKAMPVKP----VAACNGMIMGFGLNGEVGKARWV 286

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F++M+ ++  +W+++I  +   G    AL  F+ M+ E + PN  + I +L  C     +
Sbjct: 287 FDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASL 346

Query: 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
           D GR++ + +   +     Y     ++ ++ +   L     + +    + ++V+W S++A
Sbjct: 347 DHGRQVHSQLVRSHFDLDIYVS-SVLITMYIKCGDLVTGKRVFDRFS-SKDIVMWNSIIA 404

Query: 528 ACRVHGEIELA 538
               HG  E A
Sbjct: 405 GYAQHGFGEKA 415



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 131/254 (51%), Gaps = 39/254 (15%)

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
           A +    I+ +A  G +D A+ +FD +  K +    A+V+GY    +  +A+ +FD+M E
Sbjct: 16  AAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPE 75

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK--VTMLSVISACAHLGVLDQAQ 370
           ++ I W+ ++SGY +N    EA K+F++M      P++  V+  S++      G++D+A+
Sbjct: 76  RNTISWNGLVSGYVKNGMISEARKVFDKM------PERNVVSWTSMVRGYVQEGLIDEAE 129

Query: 371 RIHLYI-DKNA------FGG---DLRVNNA--------IIDMYAKC---------GSLES 403
            +   + +KN        GG   D RV+ A        + D+ A           G L  
Sbjct: 130 LLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSE 189

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
           ARE+F+ M +RNV++WTSMI+ +A++     A   F  M D+    N VT+  +L   + 
Sbjct: 190 AREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDK----NEVTWTAMLKGYTR 245

Query: 464 AGLVDEGREIFASM 477
           +G ++E  E+F +M
Sbjct: 246 SGRINEAAELFKAM 259



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 139/295 (47%), Gaps = 54/295 (18%)

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
           ++   +S ++R GQ++ AR IFD +  K +  W+A+++GY  N  P EA KLF++M    
Sbjct: 18  ITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKM---- 73

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
             P++ T+                                   N ++  Y K G +  AR
Sbjct: 74  --PERNTISW---------------------------------NGLVSGYVKNGMISEAR 98

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
           +VF++M  RNV+SWTSM+  +   G    A + F +M ++++    V++  +L      G
Sbjct: 99  KVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNV----VSWTVMLGGLIEDG 154

Query: 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
            VDE R +F  M    ++       G +    GR   L EA E+ + MP   NVV W S+
Sbjct: 155 RVDEARRLF-DMIPVKDVVASTNMIGGLCSE-GR---LSEAREIFDEMP-QRNVVAWTSM 208

Query: 526 MAACRVHGEIELAEFAAKQLLQLDPD-HDGALVLLSNIYAKDKRWQDVGELRKSM 579
           ++   ++ ++++    A++L ++ PD ++     +   Y +  R  +  EL K+M
Sbjct: 209 ISGYAMNNKVDV----ARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAM 259



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 100/224 (44%), Gaps = 31/224 (13%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL +F  M  EG+  +  S   IL        L  G QVH    +  F  D +V + L+ 
Sbjct: 314 ALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLIT 373

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG ++  + +FD+ S +DIV W+ +I GY Q+G  ++ L +F EM  S   PDE+ 
Sbjct: 374 MYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEIT 433

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
              +LSAC   G +  G  + E       ++ +  Q    T +  C              
Sbjct: 434 FIGVLSACGYTGKVKEGLEIFE-------SMKSKYQVDQKTEHYAC-------------- 472

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQM-VEKDLICWSAMIS 323
                    MV    RAG++ +A  + + M VE D I W A++S
Sbjct: 473 ---------MVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLS 507



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 104/233 (44%), Gaps = 20/233 (8%)

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
           R  L   ++ F     +    I  +A+ G ++ AR +F+ ++ + V SW +++  +  + 
Sbjct: 2   RFRLIPYRSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNK 61

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
               A   F+KM +     N +++ G++      G++ E R++F  M  E N+      +
Sbjct: 62  RPAEAQKLFDKMPER----NTISWNGLVSGYVKNGMISEARKVFDKMP-ERNVVS----W 112

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
             MV  + +  L+ EA  L   MP   NVV W  ++      G ++     A++L  + P
Sbjct: 113 TSMVRGYVQEGLIDEAELLFWRMP-EKNVVSWTVMLGGLIEDGRVD----EARRLFDMIP 167

Query: 551 DHDGALVLLSNIYA---KDKRWQDVGELRKSMKERGILKERA-CSRIEMNNEV 599
             D  +V  +N+      + R  +  E+   M +R ++   +  S   MNN+V
Sbjct: 168 VKD--VVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKV 218



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 40/233 (17%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +P  P  +   +   S +SL H +Q H+Q+++   SH   +  +  +L+T +        
Sbjct: 327 RPNFPSIISILSVCGSLASLDHGRQVHSQLVR---SHFDLDIYVSSVLITMY----IKCG 379

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
            L     +F +  +    + N  I   +     + AL+VF +M + G   D  +F  +L 
Sbjct: 380 DLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLS 439

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A      + EG+++                           + + ++   D+ +      
Sbjct: 440 ACGYTGKVKEGLEIF--------------------------ESMKSKYQVDQKTEH---- 469

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
           ++ M+D   + G  +E +NL E M    VE D +V   +LSAC    NL   E
Sbjct: 470 YACMVDLLGRAGKLNEAMNLIENMP---VEADAIVWGALLSACRTHKNLDLAE 519


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/684 (34%), Positives = 381/684 (55%), Gaps = 62/684 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P   +      I+  + S R   A+++F+++  EG  ++ F F  ILK +  
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVS 151

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            +    G  +H    KLG  S+ FV T L+  Y  CG++  AR +FD + Y+D+V W+ M
Sbjct: 152 TDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGM 211

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           +  + +N  F E L LF +M+M   +P+    + +  AC        G++VH   + +  
Sbjct: 212 VTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRY 271

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            LD                               L V  A++  Y+++G ++DAR  F++
Sbjct: 272 ELD-------------------------------LYVGVALLDLYTKSGDIDDARRAFEE 300

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           + +KD+I WS MI+ YA+++  +EA+++F +M+   + P++ T  SV+ ACA +  L+  
Sbjct: 301 IPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLG 360

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
            +IH ++ K     D+ V+NA++D+YAKCG +E++ E+F     RN ++W ++I      
Sbjct: 361 NQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQL 420

Query: 430 GDARNALIFFNKMKDE-------------------------------SIDPNGVTFIGVL 458
           GD   AL  F  M +                                ++ P+ +TF+GVL
Sbjct: 421 GDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVL 480

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            AC++AGL+D+G+  F SM  ++ I P  EHY CMV L GR   L +A++L++ +PF P+
Sbjct: 481 SACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPS 540

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
           V++W +L+ AC +H +IEL   +A+++L+++P      VLLSN+YA  KRW +V  +RK+
Sbjct: 541 VMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKN 600

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           MK +G+ KE   S IE    V+ F   D SH +   I   L  +  + K AGY+P+ +  
Sbjct: 601 MKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVV 660

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           L+D+EDEEK  ++  HSE+LAL +G+I +   S IRI+KNLR+C DCH  IK +SKV  R
Sbjct: 661 LLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQR 720

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EIV+RD  RFHH+++G+CSC DYW
Sbjct: 721 EIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 190/406 (46%), Gaps = 42/406 (10%)

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G  +H    K G   D F    L+ MY     + DA  +FD+M  R+ + +  +I GY +
Sbjct: 57  GKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAE 116

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILS--ACSRAGNLSYGEAVHEFIIDNNVALDA 253
           +  F E + LF  +     E +  V + IL     +  G L +G  +H  I       +A
Sbjct: 117 SVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWG--IHACIFKLGHESNA 174

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
            + + LI  Y+ CG +D+A+ +FD +L K++V  T MV+                     
Sbjct: 175 FVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVT--------------------- 213

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
              C       +AEN+  +EALKLF++M++ G KP+  T  SV  AC  L   D  + +H
Sbjct: 214 ---C-------FAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVH 263

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
               K+ +  DL V  A++D+Y K G ++ AR  FE + +++VI W+ MI  +A    ++
Sbjct: 264 GCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSK 323

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
            A+  F +M+   + PN  TF  VL AC+    ++ G +I   +  +  +         +
Sbjct: 324 EAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVI-KIGLHSDVFVSNAL 382

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
           +D++ +   +  ++EL    P   N V W +++      G ++L +
Sbjct: 383 MDVYAKCGRMENSMELFAESPHR-NDVTWNTVIV-----GHVQLGD 422



 Score = 47.8 bits (112), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 77/200 (38%), Gaps = 43/200 (21%)

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           + + +H  I K     DL   N +++MY K   L  A ++F+ M  RN IS+ ++I  +A
Sbjct: 56  RGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYA 115

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVL---------------YAC----------- 461
                  A+  F ++  E  + N   F  +L               +AC           
Sbjct: 116 ESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAF 175

Query: 462 ---------SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
                    S  G VD  RE+F  +  +  +      +  MV  F   +  +EAL+L   
Sbjct: 176 VGTALIDAYSVCGRVDVAREVFDGILYKDMVS-----WTGMVTCFAENDCFKEALKLFSQ 230

Query: 513 M---PFAPNVVIWGSLMAAC 529
           M    F PN   + S+  AC
Sbjct: 231 MRMVGFKPNNFTFASVFKAC 250


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/553 (39%), Positives = 333/553 (60%), Gaps = 32/553 (5%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACS 229
           A  +F+++   +I  W+ MI G+ ++      + LF +M   S++ PD      +  A +
Sbjct: 88  AAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVA 147

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
           +  ++S GE +H  ++ N                            FD +      V  +
Sbjct: 148 KLMDVSLGEGIHSVVVRNG---------------------------FDSLRF----VQNS 176

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
           +V  YS  G +  A  +F+ M  +D + W+++I+G+A N  P EAL L+ EM   G++PD
Sbjct: 177 LVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPD 236

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
             TM+S++SAC  LG L   +R+H+Y+ K     +   +NA++D+Y+KCG+   A++VF+
Sbjct: 237 GFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFD 296

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            M  R+V+SWTS+I   A++G    AL  F +++ + + P+ +TF+GVLYACSH G++DE
Sbjct: 297 EMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDE 356

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G   F  M  EY I P+ EH+GCMVDL  RA  + +A + +  MP  PN VIW +L+ AC
Sbjct: 357 GFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGAC 416

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
            +HG +EL E A  ++ +L+  H G  VLLSN+YA ++RW DV  +RK M  +G+ K   
Sbjct: 417 TIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPG 476

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
            S +E+ N VYEF+  DRSH Q+++ Y  L ++   LK  GYVP   + L D+E+EEK  
Sbjct: 477 YSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKET 536

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
            +  H+EK+A+ + L+++   + IRI+KNLRVC DCH  IKL+SKV+ REI++RDR+RFH
Sbjct: 537 ALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFH 596

Query: 710 HYKDGVCSCKDYW 722
           H+KDG CSCKDYW
Sbjct: 597 HFKDGSCSCKDYW 609



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 127/415 (30%), Positives = 202/415 (48%), Gaps = 47/415 (11%)

Query: 23  SSLTHMKQTHAQILKLSHSHHSQNSLLLKLL---LTSFSLPTTTPSSLYYALSIFSQIPA 79
           SS + +KQ HA    + H    QN    K L   L S S P +      +A  IF+QI A
Sbjct: 46  SSQSKLKQIHA--FSIRHGVPPQNPDFNKHLIFALVSLSAPMS------FAAQIFNQIQA 97

Query: 80  PPSRVSNKFIRAISWSHRPKHALKVFLKM-LNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
           P     N  IR  + S  P  A+++F +M     +  D  +FP + KA+A+   +  G  
Sbjct: 98  PNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEG 157

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H +  + GF S  FVQ  LV MY   G +  A  +F+ MSYRD V W+ +I+G+  NG+
Sbjct: 158 IHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGM 217

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
            +E L L+ EM    VEPD   +  +LSAC   G L+ GE VH +++   +  + H  + 
Sbjct: 218 PNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNA 277

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           L+ +Y+ CG    A+ +F                               D+M E+ ++ W
Sbjct: 278 LLDLYSKCGNFRDAQKVF-------------------------------DEMEERSVVSW 306

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +++I G A N    EALKLF E++  G+KP ++T + V+ AC+H G+LD+    +    K
Sbjct: 307 TSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFN-YFRRMK 365

Query: 379 NAFGGDLRV--NNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHG 430
             +G   R+  +  ++D+  + G +  A +    M    N + W +++ A  IHG
Sbjct: 366 EEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHG 420


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/658 (36%), Positives = 364/658 (55%), Gaps = 60/658 (9%)

Query: 93  SWSHRPK---------HALKVFLKMLNE----GLTIDRFSFPPILKAIARAEGLLE-GMQ 138
           SW+H+ +         HA+ +FL+M         +    S P  LK+ A A GL   G  
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCA-ALGLRALGAS 79

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMY--------------GACGKILDARLMFDKMSYRDIV 184
           +H L  + G  +D F    L+ +Y              G+   +   R +FD+M  +D+V
Sbjct: 80  LHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVV 139

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ ++ G  ++G   E L L  EM     +PD   LS +L   +   ++  G  +H F 
Sbjct: 140 SWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFA 199

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
             N    D  + S+LI MYANC   D +  +FD     NL V                  
Sbjct: 200 TRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFD-----NLPV------------------ 236

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                   +D I W++M++G A+N    EAL LF  M   G+KP  VT  S+I AC +L 
Sbjct: 237 --------RDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLA 288

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L   +++H Y+ +  F G++ +++++IDMY KCG++  AR +F+R++  +++SWT+MI 
Sbjct: 289 SLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIM 348

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
             A+HG AR AL+ F++M+  ++ PN +TF+ VL ACSHAGLVD+G + F SM++ Y I 
Sbjct: 349 GHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIV 408

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P  EH+  + D  GR   L EA   +  M   P   +W +L+ AC+VH    LAE  AK+
Sbjct: 409 PSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKK 468

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           +  L+P   G+ ++LSN Y+   RW +   LRKSM+++G+ KE ACS IE+ N+ + F+ 
Sbjct: 469 IFDLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVA 528

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            D+SH   ++I + LN    ++   GYVP+      D+E+E+K  V+  HSEKLA+ +G+
Sbjct: 529 HDKSHPWYERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGI 588

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           IS+   + IR++KNLRVC DCH   K +SK+  REIV+RD  RFHH+KDG+CSC D+W
Sbjct: 589 ISTPPGTTIRVMKNLRVCVDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 170/359 (47%), Gaps = 33/359 (9%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F ++P       N  +   + S R   AL +  +M  +G   D F+   +L   A    
Sbjct: 129 VFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGAD 188

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           +  GM++HG  T+ GF  D FV + L+ MY  C +   +  +FD +  RD + W+ M+ G
Sbjct: 189 VRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAG 248

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
             QNG  DE L LF  M  S ++P  +  S ++ AC    +L  G+ +H ++I      +
Sbjct: 249 CAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGN 308

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             + S+LI MY  CG + +A+ +FD++   ++V  TAM+ G++  G   +A ++FD+   
Sbjct: 309 VFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDR--- 365

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR- 371
                                       M++  +KP+ +T L+V++AC+H G++D+  + 
Sbjct: 366 ----------------------------MELGNLKPNHITFLAVLTACSHAGLVDKGWKY 397

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIH 429
            +   D       L  + A+ D   + G LE A      M+ +   S W++++ A  +H
Sbjct: 398 FNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVH 456



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 90/169 (53%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           Y++ +F  +P   + + N  +   + +     AL +F +ML+ G+     +F  ++ A  
Sbjct: 226 YSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACG 285

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
               LL G Q+H    + GF  + F+ + L+ MY  CG +  AR +FD++   DIV W+ 
Sbjct: 286 NLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTA 345

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           MI G+  +G   E L LF+ M++ N++P+ +    +L+ACS AG +  G
Sbjct: 346 MIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKG 394


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/705 (34%), Positives = 382/705 (54%), Gaps = 38/705 (5%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           + +C SL   ++ H  +LK+   H    +  L  L + F        ++  A  +F  +P
Sbjct: 157 LKACLSLADGEKMHCWVLKMGFEHDVYVAASLIHLYSRF-------GAVEVAHKVFVDMP 209

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
                  N  I     +     AL+V  +M  E + +D  +   +L   A++  ++ G+ 
Sbjct: 210 VRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVL 269

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           VH    K G  SD FV   L+ MY   G++ DA+ +FD M  RD+V W+ +I  Y QN  
Sbjct: 270 VHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDD 329

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN-VALDAHLQS 257
               L  F+EM    + PD + +  + S   +  +   G AVH F++    + +D  + +
Sbjct: 330 PVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGN 389

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
            L+ MYA  G +D A+ +F+++  ++++    +++GY++ G   +A   ++ M E   I 
Sbjct: 390 ALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIV 449

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
                                         P++ T +S++ A +H+G L Q  +IH  + 
Sbjct: 450 ------------------------------PNQGTWVSILPAYSHVGALQQGMKIHGRLI 479

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           KN    D+ V   +IDMY KCG LE A  +F  + +   + W ++I++  IHG    AL 
Sbjct: 480 KNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQ 539

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F  M+ + +  + +TF+ +L ACSH+GLVDE +  F +M  EY I P  +HYGCMVDLF
Sbjct: 540 LFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLF 599

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557
           GRA  L +A  LV  MP   +  IWG+L+AACR+HG  EL  FA+ +LL++D ++ G  V
Sbjct: 600 GRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYV 659

Query: 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYE 617
           LLSNIYA   +W+   ++R   ++RG+ K    S + + + V  F   ++SH Q  +IYE
Sbjct: 660 LLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYE 719

Query: 618 KLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVK 677
           +L  + +++K  GYVPD    L D+E++EK E++  HSE+LA+ +G+IS+   S IRI K
Sbjct: 720 ELRVLNAKMKSLGYVPDYSFVLQDVEEDEKEEILTSHSERLAIVFGIISTPPKSPIRIFK 779

Query: 678 NLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           NLRVC DCHN  K +SK+  REI++RD  RFHH+KDG+CSC DYW
Sbjct: 780 NLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGICSCGDYW 824



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 146/521 (28%), Positives = 261/521 (50%), Gaps = 46/521 (8%)

Query: 21  SCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAP 80
           SC+++   KQ HA +L L  +   Q+ +LL  L+T ++    T   L  + + F  I   
Sbjct: 60  SCTNINVAKQLHALLLVLGKA---QDVVLLTQLVTLYA----TLGDLSLSSTTFKHIQRK 112

Query: 81  PSRVSNKFIRAISWSHRPKHALKVFLKMLN-EGLTIDRFSFPPILKAIARAEGLLEGMQV 139
                N  + A     R + ++    ++L+  G+  D ++FPP+LKA      L +G ++
Sbjct: 113 NIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACL---SLADGEKM 169

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
           H    K+GF  D +V   L+ +Y   G +  A  +F  M  RD+  W+ MI G+ QNG  
Sbjct: 170 HCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNV 229

Query: 200 DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259
            E L + + MK   V+ D + +S +L  C+++ ++  G  VH ++I + +  D  + + L
Sbjct: 230 AEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNAL 289

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWS 319
           I MY+  G +  A+ +FD                                M  +DL+ W+
Sbjct: 290 INMYSKFGRLQDAQRVFDG-------------------------------MEVRDLVSWN 318

Query: 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK- 378
           ++I+ Y +N+ P  AL  F EM   GM+PD +T++S+ S    L      + +H ++ + 
Sbjct: 319 SIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRC 378

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
                D+ + NA+++MYAK GS++ AR VFE++  R+VISW ++I  +A +G A  A+  
Sbjct: 379 RWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDA 438

Query: 439 FNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
           +N M++  +I PN  T++ +L A SH G + +G +I   +         +    C++D++
Sbjct: 439 YNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVA-TCLIDMY 497

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
           G+   L +A+ L   +P     V W +++++  +HG  E A
Sbjct: 498 GKCGRLEDAMSLFYEIP-QETSVPWNAIISSLGIHGHGEKA 537


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/698 (33%), Positives = 382/698 (54%), Gaps = 38/698 (5%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           + +C SL   K+ H  + K+        +  L  L + + +       L  A  +F  +P
Sbjct: 131 LKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGV-------LDVAHKVFVDMP 183

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
                  N  I     +     AL V  +M  EG+ +D  +   IL   A+++ ++ G+ 
Sbjct: 184 VKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVL 243

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H    K G  SD FV   L+ MY   G++ DA+++FD+M  RD+V W+ +I  Y QN  
Sbjct: 244 IHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNND 303

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
               L  F+ M++  + PD + +  + S  S+  +     ++  F+I             
Sbjct: 304 PSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRR----------- 352

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
                              + L K++V+  A+V+ Y++ G +  A  +FDQ+  KD I W
Sbjct: 353 -------------------EWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISW 393

Query: 319 SAMISGYAENNHPQEALKLFNEMQVC-GMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           + +++GY +N    EA+  +N M+ C    P++ T +S+I A +H+G L Q  +IH  + 
Sbjct: 394 NTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLI 453

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           KN+   D+ V   +ID+Y KCG LE A  +F  + R   + W ++I +  IHG    AL 
Sbjct: 454 KNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQ 513

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F  M  E +  + +TF+ +L ACSH+GLVDEG++ F  M  EY I P  +HYGCMVDL 
Sbjct: 514 LFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLL 573

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557
           GRA  L +A ELV  MP  P+  IWG+L++AC+++G  EL   A+ +LL++D ++ G  V
Sbjct: 574 GRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYV 633

Query: 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYE 617
           LLSNIYA  ++W+ V ++R   ++RG+ K    S + + ++   F T +++H +  +IY+
Sbjct: 634 LLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYK 693

Query: 618 KLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVK 677
           +L  + +++K  GYVPD      D+E++EK +++  HSE+LA+ +G+IS+   S IRI K
Sbjct: 694 ELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFK 753

Query: 678 NLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           NLRVC DCHN  K +S++  REIV+RD  RFHH+KDG+
Sbjct: 754 NLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGI 791



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 152/553 (27%), Positives = 262/553 (47%), Gaps = 59/553 (10%)

Query: 20  SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA 79
           +SC ++   K+ HA +L    S   QN +L   L+  +     T   +  + S F  I  
Sbjct: 30  NSCVNVNATKKLHALLLVFGKS---QNIVLSTKLINLY----VTHGDISLSRSTFDYIHK 82

Query: 80  PPSRVSNKFIRA---ISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLE 135
                 N  I A       H   + +     M   G L  D ++FPPILKA      L++
Sbjct: 83  KNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVD 139

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G +VH    K+GF  D FV   LV +Y   G +  A  +F  M  +D+  W+ MI G+ Q
Sbjct: 140 GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQ 199

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           NG     L +   MK   V+ D + ++ IL  C+++ ++  G  +H  ++ + +  D  +
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFV 259

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            + LI MY+  G +  A+ +FD                               QM  +DL
Sbjct: 260 SNALINMYSKFGRLQDAQMVFD-------------------------------QMEVRDL 288

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH-- 373
           + W+++I+ Y +NN P  AL+ F  MQ+ G++PD +T++S+ S  + L      QRI   
Sbjct: 289 VSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQL----SDQRISRS 344

Query: 374 ---LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
                I +     D+ + NA+++MYAK G +  A  VF+++ R++ ISW +++  +  +G
Sbjct: 345 ILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNG 404

Query: 431 DARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
            A  A+  +N M++     PN  T++ ++ A SH G + +G +I A +    ++      
Sbjct: 405 LASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN-SLYLDVFV 463

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL--Q 547
             C++DL+G+   L +A+ L   +P   +V  W +++A+  +HG  E A    K +L  +
Sbjct: 464 ATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIHGRGEEALQLFKDMLAER 522

Query: 548 LDPDHDGALVLLS 560
           +  DH   + LLS
Sbjct: 523 VKADHITFVSLLS 535


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/553 (39%), Positives = 336/553 (60%), Gaps = 32/553 (5%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACS 229
           A  +F+++   +I  W+ MI G+ ++      + LF +M   S++ PD      +  A +
Sbjct: 88  AAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVA 147

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
           +  ++S GE +H  ++ N       +Q++L+ MY+                         
Sbjct: 148 KLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYS------------------------- 182

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
            V G++     E A  +F+ M  +D + W+++I+G+A N  P EAL L+ EM   G++PD
Sbjct: 183 -VFGFA-----ESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPD 236

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
             TM+S++SAC  LG L   +R+H+Y+ K     +   +NA++D+Y+KCG+   A++VF+
Sbjct: 237 GFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFD 296

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            M  R+V+SWTS+I   A++G    AL  F +++ + + P+ +TF+GVLYACSH G++DE
Sbjct: 297 EMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDE 356

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G   F  M  EY I P+ EH+GCMVDL  RA  + +A + +  MP  PN VIW +L+ AC
Sbjct: 357 GFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGAC 416

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
            +HG +EL E A  ++ +L+  H G  VLLSN+YA ++RW DV  +RK M  +G+ K   
Sbjct: 417 TIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPG 476

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
            S +E+ N VYEF+  DRSH Q+++ Y  L ++   LK  GYVP   + L D+E+EEK  
Sbjct: 477 YSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKET 536

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
            +  H+EK+A+ + L+++   + IRI+KNLRVC DCH  IKL+SKV+ REI++RDR+RFH
Sbjct: 537 ALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFH 596

Query: 710 HYKDGVCSCKDYW 722
           H+KDG CSCKDYW
Sbjct: 597 HFKDGSCSCKDYW 609



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 127/415 (30%), Positives = 201/415 (48%), Gaps = 47/415 (11%)

Query: 23  SSLTHMKQTHAQILKLSHSHHSQNSLLLKLL---LTSFSLPTTTPSSLYYALSIFSQIPA 79
           SS + +KQ HA    + H    QN    K L   L S S P +      +A  IF+QI A
Sbjct: 46  SSQSKLKQIHA--FSIRHGVPPQNPDFNKHLIFALVSLSAPMS------FAAQIFNQIQA 97

Query: 80  PPSRVSNKFIRAISWSHRPKHALKVFLKM-LNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
           P     N  IR  + S  P  A+++F +M     +  D  +FP + KA+A+   +  G  
Sbjct: 98  PNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEG 157

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H +  + GF S  FVQ  LV MY   G    A  +F+ MSYRD V W+ +I+G+  NG+
Sbjct: 158 IHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGM 217

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
            +E L L+ EM    VEPD   +  +LSAC   G L+ GE VH +++   +  + H  + 
Sbjct: 218 PNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNA 277

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           L+ +Y+ CG    A+ +F                               D+M E+ ++ W
Sbjct: 278 LLDLYSKCGNFRDAQKVF-------------------------------DEMEERSVVSW 306

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +++I G A N    EALKLF E++  G+KP ++T + V+ AC+H G+LD+    +    K
Sbjct: 307 TSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFN-YFRRMK 365

Query: 379 NAFGGDLRV--NNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHG 430
             +G   R+  +  ++D+  + G +  A +    M    N + W +++ A  IHG
Sbjct: 366 EEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHG 420


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/654 (36%), Positives = 367/654 (56%), Gaps = 32/654 (4%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F  +P       N  I           ++++FL+M+  GL     +   +LKA  +
Sbjct: 199 AQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQ 258

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           +     GM  H     LG G+D FV T LV MY   G    A L+FD M  R ++ W+ M
Sbjct: 259 SGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAM 318

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY QNG+  E   LF  +  S    D   L  ++  CS+  +L  G  +H  II    
Sbjct: 319 ISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIR--- 375

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                                       K L  +LV+STA+V  YS+ G ++ A ++F +
Sbjct: 376 ----------------------------KELESHLVLSTAIVDMYSKCGAIKQATIVFGR 407

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M +K++I W+AM+ G ++N + ++ALKLF +MQ   +  + VT++S++  CAHLG L + 
Sbjct: 408 MGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKG 467

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE-RMRRRNVISWTSMINAFAI 428
           + +H +  ++ +  D  + +A+IDMYAKCG + SA ++F      ++VI   SMI  + +
Sbjct: 468 RTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGM 527

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG  R AL  +++M +E + PN  TF+ +L ACSH+GLV+EG+ +F SM  ++++ P+++
Sbjct: 528 HGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHK 587

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HY C+VDL  RA  L EA ELV+ MPF P+  +  +L++ CR H    +    A +L+ L
Sbjct: 588 HYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISL 647

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           D  + G  V+LSNIYA+ ++W+ V  +R  M+ +G+ K    S IE+ N+VY F  +D S
Sbjct: 648 DYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDS 707

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
           H     IY+ L  +  E++  GY+PD    L D+ +  K +++  HSE+LA+ +GL+S+ 
Sbjct: 708 HPSWADIYQLLENLRLEVEAEGYIPDTSCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTP 767

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             S I+I KNLRVC DCHN  K +SK+  REI++RD  RFHH+ +G CSC D+W
Sbjct: 768 CGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 188/423 (44%), Gaps = 36/423 (8%)

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L+    +H    K    ++ F+   L+ +Y   G +  AR +FD+ S  +    + MI G
Sbjct: 60  LIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAG 119

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           + +N    EV  LF  M   ++E +       L AC+              ++D+ V   
Sbjct: 120 FLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTD-------------LLDDEVG-- 164

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
                           M++ +    +    +L V ++MV+   + G + DA+ +FD M E
Sbjct: 165 ----------------MEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPE 208

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           KD++CW+++I GY +     E++++F EM   G++P  VTM +++ AC   G+       
Sbjct: 209 KDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCA 268

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H Y+     G D+ V  +++DMY+  G   SA  VF+ M  R++ISW +MI+ +  +G  
Sbjct: 269 HSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMI 328

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
             +   F ++       +  T + ++  CS    ++ GR I  S      +         
Sbjct: 329 PESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGR-ILHSCIIRKELESHLVLSTA 387

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           +VD++ +   +++A  +   M    NV+ W +++     +G    AE A K   Q+  + 
Sbjct: 388 IVDMYSKCGAIKQATIVFGRMG-KKNVITWTAMLVGLSQNG---YAEDALKLFCQMQEEK 443

Query: 553 DGA 555
             A
Sbjct: 444 VAA 446


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/625 (36%), Positives = 354/625 (56%), Gaps = 45/625 (7%)

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H L    G     F+ T LV +Y   G +  +R  FD++  +D+  W+ MI  Y  NG 
Sbjct: 38  LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 97

Query: 199 FDEVLNLFEEMKM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
           F E +  F ++ + S + PD      +L AC   G L  G  +H +        +  + +
Sbjct: 98  FHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAA 154

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG------------------------ 293
           +LI MY+  G   +A+ LFD +  +++    AM+SG                        
Sbjct: 155 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 214

Query: 294 ---------------YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
                          Y++ G ++ A  +F+ +  KD+I W+ +I+GYA+N    EA++++
Sbjct: 215 NFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVY 274

Query: 339 NEMQVCG-MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
             M+ C  + P++ T +S++ A AH+G L Q  +IH  + K     D+ V   +ID+Y K
Sbjct: 275 KMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGK 334

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CG L  A  +F ++ + + ++W ++I+   IHG A   L  F +M DE + P+ VTF+ +
Sbjct: 335 CGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSL 394

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L ACSH+G V+EG+  F  M  EY I P  +HYGCMVDL GRA  L  A + ++ MP  P
Sbjct: 395 LSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQP 453

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
           +  IWG+L+ ACR+HG IEL +FA+ +L ++D  + G  VLLSNIYA   +W+ V ++R 
Sbjct: 454 DASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRS 513

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
             +ERG+ K    S IE+N +V  F T ++SH +  +IYE+L  + +++K  GY+PD   
Sbjct: 514 LARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSF 573

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
            L D+E++EK  ++  HSE+LA+ +G+IS+   S IRI KNLRVC DCHN  K +S++  
Sbjct: 574 VLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQ 633

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           REIV+RD  RFHH+KDG+CSC DYW
Sbjct: 634 REIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 189/400 (47%), Gaps = 45/400 (11%)

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML-NEGLTIDRFSFPPILKAIARAEG 132
           F QIP       N  I A   +     A+  F ++L    +  D ++FPP+LKA      
Sbjct: 74  FDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGT--- 130

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L++G ++H    KLGF  + FV   L+ MY   G    AR +FD M +RD+  W+ MI G
Sbjct: 131 LVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISG 190

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC----SRAGNLSYGEAVHEFI---- 244
             QNG   + L++ +EM++  ++ + + +  IL       ++ G L     V E I    
Sbjct: 191 LIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKD 250

Query: 245 -IDNNVALDAHLQS---------------------------TLITMYANCGCMDMAKGLF 276
            I  N  +  + Q+                           +++  YA+ G +     + 
Sbjct: 251 VISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIH 310

Query: 277 DKVLLKNL----VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
            +V+  NL     V+T ++  Y + G++ DA  +F Q+ ++  + W+A+IS +  + H +
Sbjct: 311 GRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAE 370

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
           + LKLF EM   G+KPD VT +S++SAC+H G +++ +     + +      L+    ++
Sbjct: 371 KTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMV 430

Query: 393 DMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIHGD 431
           D+  + G LE A +  + M  +   S W +++ A  IHG+
Sbjct: 431 DLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGN 470



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 184/438 (42%), Gaps = 101/438 (23%)

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
           SYG       ID N   D    S+  T +A C    +   L     ++++ +ST +V+ Y
Sbjct: 10  SYGLGNQNEEIDFNFLFD----SSTKTPFAKC----LHALLVVAGKVQSIFISTRLVNLY 61

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE-MQVCGMKPDKVTM 353
           +  G V  +R  FDQ+ +KD+  W++MIS Y  N H  EA+  F + + V  ++PD  T 
Sbjct: 62  ANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTF 121

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
             V+ AC   G L   ++IH +  K  F  ++ V  ++I MY++ G    AR +F+ M  
Sbjct: 122 PPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPF 178

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL------YACSHAGLV 467
           R++ SW +MI+    +G+A  AL   ++M+ E I  N VT + +L      YA    GL+
Sbjct: 179 RDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYA--KLGLL 236

Query: 468 D-----------------------------------------EGREIFASMTNEYNIPPK 486
           D                                         E +EI  +     +I P 
Sbjct: 237 DSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPA 296

Query: 487 YEHYG-------------------------CMVDLFGRANLLREALELVETMPFAPNVVI 521
           Y H G                         C++D++G+   L +A+ L   +P   + V 
Sbjct: 297 YAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESSVT 355

Query: 522 WGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALVLLSNI----YAKDKRWQDVGEL 575
           W ++++   +HG  E  L  F       + PDH   + LLS      + ++ +W      
Sbjct: 356 WNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKW-----C 410

Query: 576 RKSMKERGI---LKERAC 590
            + M+E GI   LK   C
Sbjct: 411 FRLMQEYGIKPSLKHYGC 428



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 4/248 (1%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI--DRFSFPPILKAI 127
           A  +F  IP       N  I   + +     A++V+ KM+ E   I  ++ ++  IL A 
Sbjct: 239 AHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVY-KMMEECKEIIPNQGTWVSILPAY 297

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
           A    L +GM++HG   K     D FV T L+ +YG CG+++DA  +F ++     V W+
Sbjct: 298 AHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWN 357

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
            +I  +  +G  ++ L LF EM    V+PD +    +LSACS +G +  G+     + + 
Sbjct: 358 AIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEY 417

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLF-DKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
            +         ++ +    G ++MA     D  L  +  +  A++      G +E  +  
Sbjct: 418 GIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFA 477

Query: 307 FDQMVEKD 314
            D++ E D
Sbjct: 478 SDRLFEVD 485


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/667 (36%), Positives = 365/667 (54%), Gaps = 73/667 (10%)

Query: 101 ALKVFLKMLNE-GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           A+K+F +M  + G+  D  S   +L A A       G QVHG   + G   D FV   +V
Sbjct: 233 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVV 292

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE------------ 207
            MY  CG + +A  +F++M  +D+V W+ M+ GY Q G FD+ L LFE            
Sbjct: 293 DMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVV 352

Query: 208 -----------------------EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
                                  +M +   EP+ + L  +LS C+ AG L +G+  H   
Sbjct: 353 TWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHA 412

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           I   + LD +                            +L+V  A++  YS+    + AR
Sbjct: 413 IKWILNLDENDPG------------------------DDLMVINALIDMYSKCKSPKAAR 448

Query: 305 LIFDQMVEKD--LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS---- 358
            +FD +  KD  ++ W+ +I G A++    EAL+LF++M    ++PD   M +  +    
Sbjct: 449 AMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQM----LQPDNFVMPNAFTISCA 504

Query: 359 --ACAHLGVLDQAQRIHLYIDKNAF-GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
             ACA LG L   ++IH Y+ +N F    L V N +IDMY+K G +++AR VF+ M +RN
Sbjct: 505 LMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRN 564

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
            +SWTS++  + +HG    AL  F +M+   + P+GVTF+ VLYACSH+G+VD+G   F 
Sbjct: 565 GVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFN 624

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
            M  ++ + P  EHY CMVDL  RA  L EA+EL+  MP  P   +W +L++ACRV+  +
Sbjct: 625 GMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANV 684

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           EL E+AA QLL+L+  +DG+  LLSNIYA  + W+DV  +R  MK  GI K   CS ++ 
Sbjct: 685 ELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQG 744

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
                 F   D SH  + QIY+ L +++  +K  GYVPD   AL D++DEEK +++  HS
Sbjct: 745 RKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHS 804

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLAL YG++++   + IRI KNLR C DCH+    +S +   EI++RD +RFHH+K+G 
Sbjct: 805 EKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGS 864

Query: 716 CSCKDYW 722
           CSC+ YW
Sbjct: 865 CSCRGYW 871



 Score =  272 bits (695), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 184/573 (32%), Positives = 296/573 (51%), Gaps = 44/573 (7%)

Query: 15  TSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIF 74
           TST    C SL   + TH Q+L     H   +       + S  L   +P+    ALS+ 
Sbjct: 51  TSTLFHQCKSLASAELTHQQLLVQGLPHDPTH-------IISMYLTFNSPAK---ALSVL 100

Query: 75  SQIPAPPSRV--SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
            ++      V   N+ IR        +  L+++ +M   G   D ++FP +LKA      
Sbjct: 101 RRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPS 160

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR---DIVPWSVM 189
              G  VH +    GF  + FV  GLV MYG CG   +AR +FD+M  R   D+V W+ +
Sbjct: 161 FRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSI 220

Query: 190 IDGYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +  Y Q G     + +FE M     + PD + L  +L AC+  G  S G+ VH + + + 
Sbjct: 221 VAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSG 280

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           +  D  + + ++ MYA CG M+ A  +F+++ +K++V   AMV+GYS+ G+ +DA  +F+
Sbjct: 281 LFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFE 340

Query: 309 QM----VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
           ++    +E +++ WSA+I+GYA+     EAL +F +M +CG +P+ VT++S++S CA  G
Sbjct: 341 KIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAG 400

Query: 365 VLDQAQRIH-------LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM--RRRN 415
            L   +  H       L +D+N  G DL V NA+IDMY+KC S ++AR +F+ +  + R+
Sbjct: 401 TLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRS 460

Query: 416 VISWTSMINAFAIHGDARNALIFFNKM--KDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           V++WT +I   A HG+A  AL  F++M   D  + PN  T    L AC+  G +  GR+I
Sbjct: 461 VVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQI 520

Query: 474 FASMTNEYNIPPKYEH-----YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
            A     Y +  ++E        C++D++ ++  +  A  + + M    N V W SLM  
Sbjct: 521 HA-----YVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM-HQRNGVSWTSLMTG 574

Query: 529 CRVHGEIE--LAEFAAKQLLQLDPDHDGALVLL 559
             +HG  E  L  F   Q + L PD    +V+L
Sbjct: 575 YGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVL 607



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 142/320 (44%), Gaps = 17/320 (5%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMKQTHAQ----ILKLSHSHHSQNSLLLKLLLTSFSLP 60
           S+P     +   +  +S  +L H K+TH      IL L  +    + +++  L+  +S  
Sbjct: 382 SEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYS-K 440

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHR---PKHALKVFLKML--NEGLTI 115
             +P +   A ++F  IP P  R    +   I  + +      AL++F +ML  +  +  
Sbjct: 441 CKSPKA---ARAMFDLIP-PKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMP 496

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDP-FVQTGLVGMYGACGKILDARLM 174
           + F+    L A AR   L  G Q+H    +  F S   FV   L+ MY   G +  AR++
Sbjct: 497 NAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVV 556

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           FD M  R+ V W+ ++ GY  +G  +E L +F EM+   + PD +    +L ACS +G +
Sbjct: 557 FDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMV 616

Query: 235 SYG-EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVS 292
             G    +    D  V   A   + ++ + +  G +D A  L   + +K    V  A++S
Sbjct: 617 DQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLS 676

Query: 293 GYSRAGQVEDARLIFDQMVE 312
                  VE      +Q++E
Sbjct: 677 ACRVYANVELGEYAANQLLE 696


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/610 (38%), Positives = 347/610 (56%), Gaps = 36/610 (5%)

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC--GKILDAR 172
           +D+ S    +K   R  G L+ +Q H +   L    D F+ + L+        G +  A 
Sbjct: 5   LDQGSLVAAIKRCTRV-GDLKAIQAHMVRANLT--QDTFLTSKLIESSAVTLSGHVAYAH 61

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
            +F    + ++  W+ +I GY  +      + L+ +M +  + P+      +L AC +  
Sbjct: 62  RIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLL 121

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
            L  G+ +H  I+   +  +  L + LI +YA CGCMD A                    
Sbjct: 122 RLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYAC------------------- 162

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
                       ++FD+M E D   WS M+SGYA+N    EALKLF EMQ   +  D  T
Sbjct: 163 ------------VMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFT 210

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           + SV+  C  LG LD  + +H Y+DK     D+ +  A++ MY+KCGSL++A +VF+ M 
Sbjct: 211 LASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMA 270

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
            R+V +W++MI  +AIHG    AL  F+ MK     PN VTF  VL ACSH+GLV++G +
Sbjct: 271 ERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQ 330

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
           IF +M  EY I P+ +HYGCMVDLF RA ++  A + ++TMP  PNVV+W +L+ AC+ H
Sbjct: 331 IFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTH 390

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
           G  +L E  ++++L+LDP      VL+SN+YA   RW  V ++R  MK++   K+   S 
Sbjct: 391 GYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSS 450

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652
           IE+N  V++F+  D SH + ++IY  L+++  +LK  G+V      L D+++EEK   + 
Sbjct: 451 IEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGHVNSTVDVLHDIDEEEKEYALG 510

Query: 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712
            HSE+LA+ YGL+ +   S IRIVKNLRVC DCH  IKL+S+VY REI++RDR RFHH++
Sbjct: 511 LHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIKLISEVYNREIIVRDRVRFHHFR 570

Query: 713 DGVCSCKDYW 722
           +  CSC DYW
Sbjct: 571 ERGCSCNDYW 580



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 199/415 (47%), Gaps = 38/415 (9%)

Query: 18  AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI 77
           AI  C+ +  +K   A +++   ++ +Q++ L   L+ S ++  T    + YA  IFS  
Sbjct: 13  AIKRCTRVGDLKAIQAHMVR---ANLTQDTFLTSKLIESSAV--TLSGHVAYAHRIFSCT 67

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
             P   + N  IR  S S  P  A+ ++  M   G++ + ++F  +LKA  +   L EG 
Sbjct: 68  HHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQ 127

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           ++H    K+G   +  +  GL+ +Y ACG +  A +MFD+M   D   WS M+ GY QNG
Sbjct: 128 ELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNG 187

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
              E L LF EM+  NV  D   L+ ++  C   G L  G+ VH ++    V +D  L +
Sbjct: 188 QAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGT 247

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
            L+ MY+ CG +D A  +F  +  +++   + M++GY+  G                   
Sbjct: 248 ALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHG------------------- 288

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI-HLYI 376
                       H ++AL+LF+ M+     P+ VT  SV+SAC+H G++++  +I     
Sbjct: 289 ------------HGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMW 336

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHG 430
            +      ++    ++D++ + G +  A +  + M    NV+ W +++ A   HG
Sbjct: 337 TEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHG 391


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/683 (36%), Positives = 382/683 (55%), Gaps = 42/683 (6%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKM----------LNEGLTIDRFS 119
           A + F  +P   +   N  +     +  P  AL +F +M          L  GL++ R +
Sbjct: 36  ARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQT 95

Query: 120 FP---------PILKAIARAEGLLEGMQVHGL---GTKLGFGSDP----FVQTGLVGMYG 163
            P         P   ++     LL G   HGL     +L F   P       T L+G   
Sbjct: 96  LPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRL-FQQMPERNHVSYTVLLGGLL 154

Query: 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSK 223
             G++ +AR +FD+M  RD+V W+ M+ GY Q G   E   LF+EM   NV    +  + 
Sbjct: 155 DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTA 210

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           ++S  ++ G ++    + E + + N        + ++  Y   G ++ A  LF+ +    
Sbjct: 211 MISGYAQNGEVNLARKLFEVMPERNEVS----WTAMLVGYIQAGHVEDAAELFNAMPEHP 266

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           +    AM+ G+ + G V+ A+ +F++M E+D   WSAMI  Y +N    EAL  F EM  
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
            G++P+  +++S+++ CA L VLD  + +H  + + +F  D+   +A+I MY KCG+L+ 
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDK 386

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
           A+ VF     ++++ W SMI  +A HG    AL  F+ M+   + P+G+T+IG L ACS+
Sbjct: 387 AKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSY 446

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
            G V EGREIF SMT   +I P  EHY CMVDL GR+ L+ EA +L++ MP  P+ VIWG
Sbjct: 447 TGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWG 506

Query: 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
           +LM ACR+H   E+AEFAAK+LL+L+P + G  VLLS+IY    RW+D  ++RK +  R 
Sbjct: 507 ALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRN 566

Query: 584 ILKERACSRIEMNNEVYEFLTAD----RSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
           + K   CS IE +  V+ F + D      H    +I EKL+ ++ E   +GY  D    L
Sbjct: 567 LNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLME---SGYSADGSFVL 623

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
            D+++E+K   + +HSE+ A+ YGL+   +   IR++KNLRVC DCH+ IKL++K+ +RE
Sbjct: 624 HDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSRE 683

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           I++RD  RFHH+KDG CSC+DYW
Sbjct: 684 IILRDANRFHHFKDGFCSCRDYW 706



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 209/427 (48%), Gaps = 44/427 (10%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS--- 222
           G I  AR  F+ M  R    ++ ++ GYF+N L D  L LF  M   ++     ++S   
Sbjct: 31  GNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLS 90

Query: 223 ----KILSACSRAGNLSYGEAVHEFI------IDNNVALDA-----------HLQST-LI 260
                +  A +   ++ +  +V  F       + + +  DA           H+  T L+
Sbjct: 91  LRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLL 150

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
               + G ++ A+ LFD++  +++V  TAM+SGY +AG++ +AR +FD+M +++++ W+A
Sbjct: 151 GGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTA 210

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           MISGYA+N     A KLF  M     + ++V+  +++      G ++ A  +   + ++ 
Sbjct: 211 MISGYAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHP 266

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
                   NA++  + + G +++A+ VFE+M  R+  +W++MI A+  +     AL  F 
Sbjct: 267 VAA----CNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFR 322

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN-EYNIPPKYEHYGCMVDLFGR 499
           +M    + PN  + I +L  C+   ++D GRE+ A+M    +++         ++ ++ +
Sbjct: 323 EMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDM--DVFAVSALITMYIK 380

Query: 500 ANLLREALELVETMPFAP-NVVIWGSLMAACRVH--GEIELAEFAAKQLLQLDPD---HD 553
              L +A  +  T  F P ++V+W S++     H  GE  L  F   +L  + PD   + 
Sbjct: 381 CGNLDKAKRVFHT--FEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYI 438

Query: 554 GALVLLS 560
           GAL   S
Sbjct: 439 GALTACS 445



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 128/286 (44%), Gaps = 48/286 (16%)

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL-IFDQMVEKDLICW 318
           I   A  G ++ A+  F+ + L+      A+++GY R  ++ DA L +F +M  +DL  +
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFR-NRLPDAALGLFRRMPSRDLASY 82

Query: 319 SAMISGYA--ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
           +A+ISG +      P  A  L +        P  V+  S++      G+L  A R+   +
Sbjct: 83  NALISGLSLRRQTLPDAAAALAS----IPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM 138

Query: 377 DKN-------AFGGDL---RVN-----------------NAIIDMYAKCGSLESAREVFE 409
            +          GG L   RVN                  A++  Y + G +  AR +F+
Sbjct: 139 PERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFD 198

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            M +RNV+SWT+MI+ +A +G+   A   F  M +     N V++  +L     AG V++
Sbjct: 199 EMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVED 254

Query: 470 GREIFASMTNEYNIPPKYEHYGC--MVDLFGRANLLREALELVETM 513
             E+F +M       P++    C  M+  FG+  ++  A  + E M
Sbjct: 255 AAELFNAM-------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKM 293


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/717 (34%), Positives = 386/717 (53%), Gaps = 43/717 (5%)

Query: 10  PLTLPTSTAISSCSSLTHM---KQTHAQILKLSHS-HHSQNSLLLKLLLTSFSLPTTTPS 65
           P ++  ++ +++CS++  +   KQ H+ +LK   S  +     LL L + S  +      
Sbjct: 242 PDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEE---- 297

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
               AL IF         + N  + A         +  +F +ML  G+  ++F++P +L+
Sbjct: 298 ----ALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLR 353

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
                  +  G Q+H L  K GF SD +V   L+ MY   G +  A+ + D +  +D+V 
Sbjct: 354 TCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVS 413

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ MI GY Q+    E L  F+EM+   + PD + L+  +SAC+    +  G  +H  + 
Sbjct: 414 WTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVY 473

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
            +  + D  + + L+ +YA CG   ++K  F                             
Sbjct: 474 VSGYSADVSIWNGLVYLYARCG---ISKEAFSS--------------------------- 503

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
            F+ +  K+ I W+ +ISG+A++   +EALK+F +M   G K +  T +S ISA A+L  
Sbjct: 504 -FEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLAD 562

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           + Q ++IH  + K  +  +  ++NA+I +Y KCGS+E A+  F  M +RN +SW ++I  
Sbjct: 563 IKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITC 622

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
            + HG    AL  F++MK + + P+ VTF+GVL ACSH GLV+EG   F SM+NE+ I P
Sbjct: 623 CSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHP 682

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
           + +HY C+VD+ GRA  L  A   VE MP   + ++W +L++AC+VH  +E+ EFAAK L
Sbjct: 683 RPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHL 742

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
           L+L+P    + VLLSN YA   +W    ++RK MK+RG+ KE   S IE+ N V+ F   
Sbjct: 743 LELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVG 802

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           DR H   DQIY  L+ +   L   GY  + +    + E E K      HSEKLA+ +GL+
Sbjct: 803 DRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPTAFVHSEKLAVAFGLM 862

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S      +R++KNLRVC DCH ++K  S V  REIV+RD  RFHH+ +G CSC DYW
Sbjct: 863 SLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 211/451 (46%), Gaps = 36/451 (7%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + A++++ +M   G+    +    IL A  + E    G  +H    K GF S+ FV   L
Sbjct: 125 EEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNAL 184

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + +Y  C     A  +F  M Y D V ++ +I G+ Q G  D  L +F+EM++S + PD 
Sbjct: 185 ISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDS 244

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           + ++ +L+ACS  G+L  G+ +H +++   ++LD  ++ +L+ +Y   G           
Sbjct: 245 VTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSG----------- 293

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
                                +E+A  IFD     +++ W+ M+  Y + +   ++  +F
Sbjct: 294 --------------------DIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIF 333

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
             M   G++P+K T   ++  C H G +   ++IH    KN F  D+ V+  +IDMY+K 
Sbjct: 334 YRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKY 393

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G L+ A+ + + +  ++V+SWTSMI  +  H   + AL  F +M+   I P+ +     +
Sbjct: 394 GWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAI 453

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            AC+    V +G +I A +            +  +V L+ R  + +EA    E +     
Sbjct: 454 SACAGIKAVHQGSQIHARVYVS-GYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEG 512

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           +  W  L++     G   L E A K  +++D
Sbjct: 513 IT-WNGLISGFAQSG---LYEEALKVFMKMD 539



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 124/461 (26%), Positives = 217/461 (47%), Gaps = 38/461 (8%)

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM--QVHGLGTKLGFGSDPFVQ 155
           P+  L +F     + + +    F   L+A  R  G    +  ++H      G      + 
Sbjct: 22  PEKLLPLFAAKCRQYMVLGAVDFACALRA-CRGSGRRWPLVPEIHAKAIICGLSGYRIIG 80

Query: 156 TGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
             L+ +Y   G +  AR +F+++S RD V W  ++ GY QNGL +E + L+ EM  S V 
Sbjct: 81  NLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVV 140

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           P   VLS ILSAC++      G  +H                  + +Y         +G 
Sbjct: 141 PTPYVLSSILSACTKTELFQLGRLIH------------------VQVYK--------QGF 174

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           F +  + N     A++S Y R      A  +F  M+  D + ++ +ISG+A+  H   AL
Sbjct: 175 FSETFVGN-----ALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRAL 229

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
            +F+EMQ+ G+ PD VT+ S+++AC+ +G L + +++H Y+ K     D  +  +++D+Y
Sbjct: 230 GIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLY 289

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
            K G +E A ++F+   R NV+ W  M+ A+    D   +   F +M    + PN  T+ 
Sbjct: 290 VKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYP 349

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
            +L  C+H G +  G +I  S+T +          G ++D++ +   L +A  +++ +  
Sbjct: 350 CMLRTCTHTGEIGLGEQIH-SLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIE- 407

Query: 516 APNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDG 554
             +VV W S++A    H   +  L  F   Q   + PD+ G
Sbjct: 408 EKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIG 448


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 267/763 (34%), Positives = 421/763 (55%), Gaps = 72/763 (9%)

Query: 20  SSCSSLTHMKQTHAQILKLS-HSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           S  S++  ++Q H  ++  S HSH+   SLLL       + P        Y  SIF+  P
Sbjct: 9   SKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPA-------YVDSIFTSSP 61

Query: 79  APPSRV-------------SNKFIRAISWSH----RPKHALKVFL-------------KM 108
           +P + V              N+ +     +H    RP+  + ++L              +
Sbjct: 62  SPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAYV 121

Query: 109 LNEGLTIDRFSFPPILKAIAR------AEGLLEGMQVHGLGT---------KLGFGSDPF 153
           L  G   D F    IL   A+      A  L E M    L           K G  ++  
Sbjct: 122 LKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAV 181

Query: 154 V------------QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201
           V             T +V  Y   G +  AR  FD+M  R +V W+ M   Y Q     E
Sbjct: 182 VLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKE 241

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
            LNLF +M    + PD+      +S+CS  G+ +  +++   I   ++ L++ +++ L+ 
Sbjct: 242 ALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLD 301

Query: 262 MYANCGCMDMAKGLFDKV-LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
           M+A  G +++A+ +FD++   +N V    M+S Y+R G++  AR +FD M ++D++ W++
Sbjct: 302 MHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNS 361

Query: 321 MISGYAENNHPQEALKLFNEMQVC-GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379
           MI+GYA+N     +++LF EM  C  ++PD+VT+ SV+SAC H+G L  +  +   + + 
Sbjct: 362 MIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREK 421

Query: 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFF 439
                +   N++I MY+KCGS+  A  +F+ M  R+V+S+ ++I+ FA +G  + A+   
Sbjct: 422 NIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLV 481

Query: 440 NKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499
             M++E I+P+ VT+IGVL ACSHAGL++EG+ +F S+       P  +HY CMVDL GR
Sbjct: 482 LTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGR 536

Query: 500 ANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLL 559
           A  L EA  L+++MP  P+  ++GSL+ A R+H  + L E AA +L +L+P + G  VLL
Sbjct: 537 AGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLL 596

Query: 560 SNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKL 619
           SNIYA   RW+DV  +R+ MK+ G+ K    S +E   +V++F   DRSH+Q+  IY+ L
Sbjct: 597 SNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLL 656

Query: 620 NEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNL 679
            E+  ++K  G+V D   AL D+E+EEK E++  HSEKLA+C+ L+ S+  + IR+VKNL
Sbjct: 657 AELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNL 716

Query: 680 RVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           R+C DCH  IK++SK+  REIV+RD  RFH + +G+CSC DYW
Sbjct: 717 RICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/716 (34%), Positives = 390/716 (54%), Gaps = 41/716 (5%)

Query: 10  PLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P  +  ++ +++C+S+  +   KQ H+ +LK   +  S + ++   LL  +         
Sbjct: 242 PDCVTIASLLAACASIGDLNKGKQLHSYLLK---AGMSPDYIIEGSLLDLY----VKCGV 294

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           +  AL IF         + N  + A         +  +F +M+  G+  + F++P +L+ 
Sbjct: 295 IVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRT 354

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
              A  +  G Q+H L  K GF SD +V   L+ MY   G +  AR + + +  +D+V W
Sbjct: 355 CTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSW 414

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + MI GY Q+    E L  F++M++  + PD + L+  +SAC+    +  G+ +H  +  
Sbjct: 415 TSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYV 474

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
           +  + D  + + L+ +YA C                               G+ ++A  +
Sbjct: 475 SGYSADVSIWNALVNLYARC-------------------------------GRSKEAFSL 503

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F+ +  KD I W+ M+SG+A++   +EAL++F +M   G+K +  T +S ISA A+L  +
Sbjct: 504 FEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADI 563

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
            Q ++IH  + K     +  V NA+I +Y KCGS+E A+  F  M  RN +SW ++I + 
Sbjct: 564 KQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSC 623

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           + HG    AL  F++MK E + PN VTFIGVL ACSH GLV+EG   F SM++E+ I P+
Sbjct: 624 SQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPR 683

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            +HY C+VD+ GRA  L  A + VE MP + N ++W +L++ACRVH  IE+ E AAK LL
Sbjct: 684 PDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLL 743

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           +L+P    + VLLSN YA   +W     +RK MK+RG+ KE   S IE+ N V+ F   D
Sbjct: 744 ELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGD 803

Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS 666
           R H    QIY+ L ++   L   GY+   +    + E E+K      HSEKLA+ +GL+S
Sbjct: 804 RLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMS 863

Query: 667 SKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
                 +R++KNLRVC DCH ++K  S+V  REIV+RD  RFHH+ +G CSC D+W
Sbjct: 864 LPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 205/418 (49%), Gaps = 35/418 (8%)

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H      G G D      L+ +Y   G +  AR +F+++S RD V W  M+ GY +NGL
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
            +E + L+ +M  S V P   VLS +LSAC++A     G  VH                 
Sbjct: 124 GEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHA---------------- 167

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
              +Y    C +              VV  A+++ Y R G +  A  +F +M   D + +
Sbjct: 168 --QVYKQGSCSET-------------VVGNALIALYLRFGSLSLAERVFSEMPYCDRVTF 212

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           + +IS +A+  + + AL++F EM++ G  PD VT+ S+++ACA +G L++ +++H Y+ K
Sbjct: 213 NTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLK 272

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
                D  +  +++D+Y KCG +  A E+F+   R NV+ W  M+ A+    D   +   
Sbjct: 273 AGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDL 332

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F +M    + PN  T+  +L  C++AG ++ G +I   ++ +          G ++D++ 
Sbjct: 333 FCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHL-LSIKTGFESDMYVSGVLIDMYS 391

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDG 554
           +   L +A  ++E +  A +VV W S++A    H   +  L  F   QL  + PD+ G
Sbjct: 392 KYGWLDKARRILEVLE-AKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIG 448



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/469 (23%), Positives = 216/469 (46%), Gaps = 33/469 (7%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F Q+ A  +      +   + +   + A+ ++ +M   G+    +    +L A  +
Sbjct: 96  ARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTK 155

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           A    +G  VH    K G  S+  V   L+ +Y   G +  A  +F +M Y D V ++ +
Sbjct: 156 AALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTL 215

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I  + Q G  +  L +FEEM++S   PD + ++ +L+AC+  G+L+ G+ +H +++   +
Sbjct: 216 ISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGM 275

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
           + D  ++ +L+ +Y  CG                                + +A  IF  
Sbjct: 276 SPDYIIEGSLLDLYVKCGV-------------------------------IVEALEIFKS 304

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
               +++ W+ M+  Y + +   ++  LF +M   G++P++ T   ++  C + G ++  
Sbjct: 305 GDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLG 364

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           ++IHL   K  F  D+ V+  +IDMY+K G L+ AR + E +  ++V+SWTSMI  +  H
Sbjct: 365 EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQH 424

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
              + AL  F  M+   I P+ +     + AC+    + +G++I + +            
Sbjct: 425 EFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVS-GYSADVSI 483

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
           +  +V+L+ R    +EA  L E +    + + W  +++     G  E A
Sbjct: 484 WNALVNLYARCGRSKEAFSLFEAIEH-KDKITWNGMVSGFAQSGLYEEA 531


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 267/763 (34%), Positives = 421/763 (55%), Gaps = 72/763 (9%)

Query: 20  SSCSSLTHMKQTHAQILKLS-HSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           S  S++  ++Q H  ++  S HSH+   SLLL       + P        Y  SIF+  P
Sbjct: 9   SKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPA-------YVDSIFTSSP 61

Query: 79  APPSRV-------------SNKFIRAISWSH----RPKHALKVFL-------------KM 108
           +P + V              N+ +     +H    RP+  + ++L              +
Sbjct: 62  SPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAYV 121

Query: 109 LNEGLTIDRFSFPPILKAIAR------AEGLLEGMQVHGLGT---------KLGFGSDPF 153
           L  G   D F    IL   A+      A  L E M    L           K G  ++  
Sbjct: 122 LKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAV 181

Query: 154 V------------QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201
           V             T +V  Y   G +  AR  FD+M  R +V W+ M   Y Q     E
Sbjct: 182 VLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKE 241

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
            LNLF +M    + PD+      +S+CS  G+ +  +++   I   ++ L++ +++ L+ 
Sbjct: 242 ALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLD 301

Query: 262 MYANCGCMDMAKGLFDKV-LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
           M+A  G +++A+ +FD++   +N V    M+S Y+R G++  AR +FD M ++D++ W++
Sbjct: 302 MHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNS 361

Query: 321 MISGYAENNHPQEALKLFNEMQVC-GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379
           MI+GYA+N     +++LF EM  C  ++PD+VT+ SV+SAC H+G L  +  +   + + 
Sbjct: 362 MIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREK 421

Query: 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFF 439
                +   N++I MY+KCGS+  A  +F+ M  R+V+S+ ++I+ FA +G  + A+   
Sbjct: 422 NIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLV 481

Query: 440 NKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499
             M++E I+P+ VT+IGVL ACSHAGL++EG+ +F S+       P  +HY CMVDL GR
Sbjct: 482 LTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGR 536

Query: 500 ANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLL 559
           A  L EA  L+++MP  P+  ++GSL+ A R+H  + L E AA +L +L+P + G  VLL
Sbjct: 537 AGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLL 596

Query: 560 SNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKL 619
           SNIYA   RW+DV  +R+ MK+ G+ K    S +E   +V++F   DRSH+Q+  IY+ L
Sbjct: 597 SNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLL 656

Query: 620 NEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNL 679
            E+  ++K  G+V D   AL D+E+EEK E++  HSEKLA+C+ L+ S+  + IR+VKNL
Sbjct: 657 AELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNL 716

Query: 680 RVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           R+C DCH  IK++SK+  REIV+RD  RFH + +G+CSC DYW
Sbjct: 717 RICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/609 (36%), Positives = 359/609 (58%), Gaps = 4/609 (0%)

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
            S+ P+ + +     L  G QVH      G      V + +V  Y + G I  +  +F+ 
Sbjct: 71  LSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNG 130

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           +     + ++ MI  Y + G  +  +  +  M       D      +L +     ++  G
Sbjct: 131 IGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMG 190

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
           + VH  I+   +  D ++ ++LI +Y  CG ++ A  +FD + ++++    A+++GY+++
Sbjct: 191 KCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKS 250

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM--QVCGMKPDKVTMLS 355
           G ++ A  IF++M  ++++ W+ MISGY+++   Q+AL LF+EM  +  G++P+ VT++S
Sbjct: 251 GCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMS 310

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-- 413
           V+ ACA L  L++ ++IH    +     +  V  A+  MYAKCGSL  AR  F+++ R  
Sbjct: 311 VLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNE 370

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           +N+I+W +MI A+A +G    A+  F +M    I P+ +TF G+L  CSH+GLVD G + 
Sbjct: 371 KNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKY 430

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           F  M+  Y+I P+ EHY C+ DL GRA  L EA +LV  MP      IWGSL+AACR H 
Sbjct: 431 FNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHR 490

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
            +E+AE AA++L  L+P++ G  VLLSN+YA+  RWQ+V +LR  +K +G  K   CS I
Sbjct: 491 NLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWI 550

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW 653
           E+N + + FL  D SH Q  +IY  L  +  ++K AGY PD    L D+ +EEK   ++ 
Sbjct: 551 EINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIA 610

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HSEKLA+ +G++++  ++ +R+ KNLR+C DCH  +  +S++Y RE+++RD  RFHH+K 
Sbjct: 611 HSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKG 670

Query: 714 GVCSCKDYW 722
           G CSC DYW
Sbjct: 671 GCCSCGDYW 679



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 124/473 (26%), Positives = 206/473 (43%), Gaps = 81/473 (17%)

Query: 2   STLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHS-------QNSLLLKLLL 54
           +TL    +PL+ P    I S + +     T   +LKL H  H+       Q + L+   +
Sbjct: 53  ATLQNLLQPLSAPGPPPILSYAPVFQF-LTGLNMLKLGHQVHAHMLLRGLQPTALVGSKM 111

Query: 55  TSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT 114
            +F   +    S   ++S+F+ I  P S + N  IRA +     +  +  +  M + G T
Sbjct: 112 VAFYASSGDIDS---SVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFT 168

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
            D F+FP +LK+      +  G  VHGL  ++G   D +V T L+ +YG CG+I DA  +
Sbjct: 169 GDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKV 228

Query: 175 FD-------------------------------KMSYRDIVPWSVMIDGYFQNGLFDEVL 203
           FD                               +M +R+IV W+ MI GY Q+GL  + L
Sbjct: 229 FDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQAL 288

Query: 204 NLFEEM--KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
           +LF+EM  + S V P+ + +  +L AC++   L  G  +HE      +  +A +   L  
Sbjct: 289 SLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTA 348

Query: 262 MYANCGCMDMAKGLFDKVLL--KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWS 319
           MYA CG +  A+  FDK+    KNL+    M++ Y+  G                     
Sbjct: 349 MYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYG--------------------- 387

Query: 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379
                     H  +A+  F EM   G++PD +T   ++S C+H G++D   +   ++   
Sbjct: 388 ----------HGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMS-T 436

Query: 380 AFGGDLRVNN--AIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIH 429
            +  + RV +   + D+  + G L  A ++   M      S W S++ A   H
Sbjct: 437 TYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKH 489


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/644 (36%), Positives = 370/644 (57%), Gaps = 46/644 (7%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  +R ++     + AL ++ +ML  G + + F+FP   K+ A     L G Q+HG   K
Sbjct: 25  NARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIK 84

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY-RDI-VPWSVMIDGYFQNGLFDEVL 203
            G   +PFVQT L+ MY  C  I  AR +FD+  + R++ V ++ +I GY  N  F + +
Sbjct: 85  TGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAV 144

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            LF +M+   V  + + +  ++  C+   +L +G ++H   +   +  D  + + L+TMY
Sbjct: 145 LLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMY 204

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
             C                               G V+ AR +FD M EK LI W+AMIS
Sbjct: 205 VRC-------------------------------GSVDFARKLFDGMPEKGLITWNAMIS 233

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           GYA+N      L L+ +M+  G+ PD VT++ V+S+CAHLG     + +   I+ + FG 
Sbjct: 234 GYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGF 293

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
           +  + NA+I+MYA+CG+L  AR +F+ M  +NVISWT++I  + +HG    A+  F++M 
Sbjct: 294 NPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMI 353

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
                P+G  F+ VL ACSHAGL ++G   F +M  +Y + P  EHY C+VDL GRA  L
Sbjct: 354 SSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRL 413

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563
            EA +L+ +M   P+  +WG+L+ AC++H  +ELAE A +++++ +P + G  VLLSNI+
Sbjct: 414 EEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIF 473

Query: 564 AKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVI 623
           ++    + +  +R  M+ER + KE  CS +E    ++ FL  DR+H Q  +IY  L+ + 
Sbjct: 474 SEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLE 533

Query: 624 SELKPAGYVPDIHSALVDLEDEEKR--EVILW---HSEKLALCYGLISSKKDSCIRIVKN 678
             +K  G   D         D+E R  E+I     HSEKLA+ +GLI+++  + I ++KN
Sbjct: 534 DIIKRRGGSND--------NDQESRNEELITGMGVHSEKLAIAFGLINTEPGTEITVIKN 585

Query: 679 LRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LRVC DCH F+KLVS++  R++V+RD TRFHH+K+GVCSCKDYW
Sbjct: 586 LRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 8/253 (3%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
            S+ +A  +F  +P       N  I   + +    H L ++ KM   G+  D  +   +L
Sbjct: 208 GSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVL 267

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            + A       G +V       GFG +PF++  L+ MY  CG ++ AR +FD M+ ++++
Sbjct: 268 SSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVI 327

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG----NLSYGEAV 240
            W+ +I GY  +G  +  + LF+EM  S+  PD      +LSACS AG     L Y  A+
Sbjct: 328 SWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAM 387

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQ 299
                D  +       S ++ +    G ++ A+ L   + ++ +  V  A++        
Sbjct: 388 ER---DYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRN 444

Query: 300 VEDARLIFDQMVE 312
           VE A L F++++E
Sbjct: 445 VELAELAFEKVIE 457



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 105/213 (49%), Gaps = 4/213 (1%)

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W+A +   A   H QEAL L+ +M   G  P+  T      +CA L +     ++H ++ 
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVF-ERMRRRNV-ISWTSMINAFAIHGDARNA 435
           K     +  V  ++I MY KC ++ SAR+VF E    RN+ + + ++I  ++++    +A
Sbjct: 84  KTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDA 143

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
           ++ F +M+ E +  N VT +G++  C+    +  G  + A  +  + +        C++ 
Sbjct: 144 VLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHAC-SVRFGLDGDLSVGNCLLT 202

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           ++ R   +  A +L + MP    ++ W ++++ 
Sbjct: 203 MYVRCGSVDFARKLFDGMP-EKGLITWNAMISG 234


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/492 (42%), Positives = 316/492 (64%), Gaps = 1/492 (0%)

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
           A NL  G +VH     +  A D H+QS  ++MYA  G +   +  F +++  ++V  TAM
Sbjct: 138 AVNLLAG-SVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAM 196

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           +   S  G V+ AR +FD M ++D + W+AM++GY      +EAL LF+EMQ  G+   +
Sbjct: 197 LGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSE 256

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           VT++SV++ACA +G L++   +H Y+        + +  A++DMY+KCG +  + EVFE 
Sbjct: 257 VTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFET 316

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           MR RN+ +WTS ++  A++G     L  F +M+   ++PNGVTF+ VL  CS AGLV+EG
Sbjct: 317 MRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEG 376

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
           R  F SM +++ + P  EHYGCMVDL+GRA  L +A++ + +MP  P+  +WG+L+ A R
Sbjct: 377 RACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASR 436

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
           +H  ++L + A  +L +++  +D A VLLSNIYA+   W+ V ++R  MK +G+ K   C
Sbjct: 437 IHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGC 496

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
           S IE++ +V+EF    +SH +   I   L E+   L+  GY  +    L D+E+EEK   
Sbjct: 497 SAIEVDGKVHEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAANTKEVLFDIEEEEKEGA 556

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           I  HSEKLAL +GLI+  +D+ IRIVKNLRVC+DCH++ KL+SKV+ REIV+RDR RFHH
Sbjct: 557 ISLHSEKLALAFGLITLPEDTVIRIVKNLRVCKDCHDYTKLISKVFDREIVMRDRNRFHH 616

Query: 711 YKDGVCSCKDYW 722
           +K G CSC+DYW
Sbjct: 617 FKHGACSCRDYW 628



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 212/505 (41%), Gaps = 100/505 (19%)

Query: 11  LTLPTSTAISSCSSLTHMKQTHAQILK----LSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           L LP+  A SS S    +++ HA +L      S SHH+            F     + S 
Sbjct: 17  LLLPSLVAASSQSQF-RLREIHAHLLVSGRLASPSHHAD-----------FVASLASSSH 64

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L YA  +  Q PA      N  +RA++    P  A   F ++    L  D +SF  +++A
Sbjct: 65  LSYARLLLPQRPAT-LLAHNGLLRALARGPCPGLAFAAFREL---PLAPDHYSFTFLVRA 120

Query: 127 IAR--------------AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI---- 168
                            A  LL G  VH    + G  +DP VQ+G V MY A G +    
Sbjct: 121 ATSLAAAASATPVPTDVAVNLLAG-SVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVR 179

Query: 169 --------------------------LD-ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201
                                     +D AR +FD M  RD V W+ M+ GY + G   E
Sbjct: 180 AAFAEIVSPDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSRE 239

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
            L LF+EM+ + V   E+ L  +L+AC++ G L  G  VH ++    + +   L + L+ 
Sbjct: 240 ALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVD 299

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
           MY+ CG + M+  +F+ +  +N+   T+ +S                             
Sbjct: 300 MYSKCGVVTMSMEVFETMRERNIYTWTSALS----------------------------- 330

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI-DKNA 380
             G A N   +E L+LF  M+  GM+P+ VT ++V+  C+  G++++ +     + DK+ 
Sbjct: 331 --GLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHK 388

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFF 439
               L     ++D+Y + G L+ A +    M    +   W +++NA  IH +        
Sbjct: 389 VEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDLGKHAM 448

Query: 440 NKMKD-ESIDPNGVTFIGVLYACSH 463
           +K+ + ES +      +  +YA SH
Sbjct: 449 HKLTEIESKNDAAHVLLSNIYAESH 473


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/683 (36%), Positives = 382/683 (55%), Gaps = 42/683 (6%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKM----------LNEGLTIDRFS 119
           A + F  +P   +   N  +     +  P  AL +F +M          L  GL++ R +
Sbjct: 36  ARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQT 95

Query: 120 FP---------PILKAIARAEGLLEGMQVHGL---GTKLGFGSDP----FVQTGLVGMYG 163
            P         P   ++     LL G   HGL     +L F   P       T L+G   
Sbjct: 96  LPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRL-FQQMPERNHVSYTVLLGGLL 154

Query: 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSK 223
             G++ +AR +FD+M  RD+V W+ M+ GY Q G   E   LF+EM   NV    +  + 
Sbjct: 155 DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTA 210

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           ++S  ++ G ++    + E + + N        + ++  Y   G ++ A  LF+ +    
Sbjct: 211 MISGYAQNGEVNLARKLFEVMPERNEVS----WTAMLVGYIQAGHVEDAAELFNAMPEHP 266

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           +    AM+ G+ + G V+ A+ +F++M E+D   WSAMI  Y +N    EAL  F EM  
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
            G++P+  +++S+++ CA L VLD  + +H  + + +F  D+   +A+I MY KCG+L+ 
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDK 386

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
           A+ VF     ++++ W SMI  +A HG    AL  F+ M+   + P+G+T+IG L ACS+
Sbjct: 387 AKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSY 446

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
            G V EGREIF SMT   +I P  EHY CMVDL GR+ L+ EA +L++ MP  P+ VIWG
Sbjct: 447 TGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWG 506

Query: 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
           +LM ACR+H   E+AEFAAK+LL+L+P + G  VLLS+IY    RW+D  ++RK +  R 
Sbjct: 507 ALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRN 566

Query: 584 ILKERACSRIEMNNEVYEFLTAD----RSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
           + K   CS IE +  V+ F + D      H    +I EKL+ ++ E   +GY  D    L
Sbjct: 567 LNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLME---SGYSADGSFVL 623

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
            D+++E+K   + +HSE+ A+ YGL+   +   IR++KNLRVC DCH+ IKL++K+ +RE
Sbjct: 624 HDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSRE 683

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           I++RD  RFHH+KDG CSC+DYW
Sbjct: 684 IILRDANRFHHFKDGFCSCRDYW 706



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 207/426 (48%), Gaps = 42/426 (9%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS--- 222
           G I  AR  F+ M  R    ++ ++ GYF+N L D  L LF  M   ++     ++S   
Sbjct: 31  GNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLS 90

Query: 223 ----KILSACSRAGNLSYGEAVHEFI------IDNNVALDA-----------HLQST-LI 260
                +  A +   ++ +  +V  F       + + +  DA           H+  T L+
Sbjct: 91  LRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLL 150

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
               + G ++ A+ LFD++  +++V  TAM+SGY +AG++ +AR +FD+M +++++ W+A
Sbjct: 151 GGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTA 210

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           MISGYA+N     A KLF  M     + ++V+  +++      G ++ A  +   + ++ 
Sbjct: 211 MISGYAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHP 266

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
                   NA++  + + G +++A+ VFE+M  R+  +W++MI A+  +     AL  F 
Sbjct: 267 VAA----CNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFR 322

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500
           +M    + PN  + I +L  C+   ++D GRE+ A+M    +          ++ ++ + 
Sbjct: 323 EMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML-RCSFDMDVFAVSALITMYIKC 381

Query: 501 NLLREALELVETMPFAP-NVVIWGSLMAACRVH--GEIELAEFAAKQLLQLDPD---HDG 554
             L +A  +  T  F P ++V+W S++     H  GE  L  F   +L  + PD   + G
Sbjct: 382 GNLDKAKRVFHT--FEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIG 439

Query: 555 ALVLLS 560
           AL   S
Sbjct: 440 ALTACS 445



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 128/286 (44%), Gaps = 48/286 (16%)

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL-IFDQMVEKDLICW 318
           I   A  G ++ A+  F+ + L+      A+++GY R  ++ DA L +F +M  +DL  +
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFR-NRLPDAALGLFRRMPSRDLASY 82

Query: 319 SAMISGYA--ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
           +A+ISG +      P  A  L +        P  V+  S++      G+L  A R+   +
Sbjct: 83  NALISGLSLRRQTLPDAAAALAS----IPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM 138

Query: 377 DKN-------AFGGDL---RVN-----------------NAIIDMYAKCGSLESAREVFE 409
            +          GG L   RVN                  A++  Y + G +  AR +F+
Sbjct: 139 PERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFD 198

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            M +RNV+SWT+MI+ +A +G+   A   F  M +     N V++  +L     AG V++
Sbjct: 199 EMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVED 254

Query: 470 GREIFASMTNEYNIPPKYEHYGC--MVDLFGRANLLREALELVETM 513
             E+F +M       P++    C  M+  FG+  ++  A  + E M
Sbjct: 255 AAELFNAM-------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKM 293


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/706 (35%), Positives = 390/706 (55%), Gaps = 41/706 (5%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           +SSC++L  + + HA  L +  S  S + +L   L T+++        L  A S  +  P
Sbjct: 10  LSSCAALRTLTRLHA--LLIVSSSASCHHILSSCLATAYA----RAGDLAAAESTLATAP 63

Query: 79  APPSRVS--NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
             PS +   N  + A S    P  AL+VF + L      D  +F   L A AR   L  G
Sbjct: 64  TSPSSIPAWNALLAAHSRGASPHEALRVF-RALPPAARPDSTTFTLALSACARLGDLATG 122

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
             V    +  G+G+D FV + ++ +Y  CG + DA  +FD+M  RD V WS M+ G+   
Sbjct: 123 EVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNA 182

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           G   + + ++  M+   +E DE+V+  ++ AC+  G+   G +VH +++ + + +D  + 
Sbjct: 183 GQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVIS 242

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           ++L+ MYA         GLFD+                        AR +F+ M  ++ +
Sbjct: 243 TSLVDMYAK-------NGLFDQ------------------------ARRVFELMPHRNDV 271

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            WSA+IS  A+  +  EAL LF  MQV G+ P+   ++  + AC+ LG+L   + IH +I
Sbjct: 272 SWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFI 331

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            +     D  V  A+IDMY+KCGSL SA+ +F+++  R++ISW  MI     HG  R+AL
Sbjct: 332 LRT-LELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDAL 390

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             F +MK   + P+  TF  +L A SH+GLV+EG+  F  M NEY I P  +H  C+VDL
Sbjct: 391 SLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDL 450

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
             R+ L+ EA  LV ++   P + I  +L++ C  + ++EL E  A+++L+L P   G L
Sbjct: 451 LARSGLVEEANGLVASLHSKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGVL 510

Query: 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
            L+SN+YA  K W  V E+RK MK+ G  K   CS IE+   ++ F+  D+SH Q  QI 
Sbjct: 511 ALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQIL 570

Query: 617 EKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIV 676
           + + ++ SE++  GY+P       DLE+  K +++  HSE+LA  +GL+++   + + ++
Sbjct: 571 QMVMKLDSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVI 630

Query: 677 KNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KNLRVC DCH+ IK +SK+  REIV+RD  RFHH+KDG CSC DYW
Sbjct: 631 KNLRVCGDCHDAIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/491 (43%), Positives = 325/491 (66%)

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
           + + LF  ++  +V PD    S +L AC    +LS G  +H  +       + +LQ+ ++
Sbjct: 111 DAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIV 170

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
            +YA+CG M  A+ LF+K+  +++V    M++   + G  E A  +F +M E+++  W++
Sbjct: 171 HLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTS 230

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           MI+GY +    +EA+ LF +M+  G+K ++VT+++V++ACA LG LD   RIH Y +++ 
Sbjct: 231 MIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHG 290

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
           F  ++R++N +IDMY KCG LE A +VFE M  R V+SW++MI   A+HG A  AL  F+
Sbjct: 291 FKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFS 350

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500
            M    I+PNGVTFIG+L+ACSH GL+ EGR  FASMT +Y I P+ EHYGCMVDL  RA
Sbjct: 351 DMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRA 410

Query: 501 NLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560
            LL EA E +  MP  PN V+WG+L+ ACRVH  +E+AE A K LL+LDP +DG  V+LS
Sbjct: 411 GLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLS 470

Query: 561 NIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLN 620
           NIYA+  RW+D   +RK MK+R + K    S I ++  V+EF+  + SH  T+QI+++  
Sbjct: 471 NIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWE 530

Query: 621 EVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLR 680
           E++ E++  GYVP+    L+D+E+ EK + +  HSEKLAL +GL+++  ++ IRI+KNLR
Sbjct: 531 ELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLR 590

Query: 681 VCEDCHNFIKL 691
           +CEDCH+  ++
Sbjct: 591 ICEDCHSAFQI 601



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 214/444 (48%), Gaps = 75/444 (16%)

Query: 28  MKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA--PPSRVS 85
           ++Q HAQI+K        N+ L  L LT   L      S +YA  IF  +    P + V 
Sbjct: 44  LRQVHAQIIK-------TNAPLSILPLTRVGLVCAFTPSFHYAQQIFECVEKQKPETFVW 96

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  ++A++    P  A+ +F ++    +  D F+   +L+A      L  G  +HG+  K
Sbjct: 97  NSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEK 156

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV----------------- 188
           +GF S+ ++Q  +V +Y +CG++ +ARL+F+KM  RD+V W++                 
Sbjct: 157 VGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDL 216

Query: 189 --------------MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
                         MI GY Q G   E ++LF +M+ + V+ +E+ +  +L+AC+  G L
Sbjct: 217 FSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGAL 276

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             G  +HE+   +    +  + +TLI MY  CGC++ A  +F+++  + +V  +AM+ G 
Sbjct: 277 DLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGL 336

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
           +  G+ E                               EAL+LF++M   G++P+ VT +
Sbjct: 337 AMHGRAE-------------------------------EALRLFSDMSQVGIEPNGVTFI 365

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERM- 411
            ++ AC+H+G++ + +R    + ++ +G   ++ +   ++D+ ++ G L  A E    M 
Sbjct: 366 GLLHACSHMGLISEGRRFFASMTRD-YGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMP 424

Query: 412 RRRNVISWTSMINAFAIHGDARNA 435
            + N + W +++ A  +H +   A
Sbjct: 425 MKPNGVVWGALLGACRVHKNVEMA 448



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 124/270 (45%), Gaps = 37/270 (13%)

Query: 303 ARLIFDQMVEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           A+ IF+  VEK   +   W++ +   AE + P +A+ LF  ++   + PD  T  SV+ A
Sbjct: 79  AQQIFE-CVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRA 137

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE---------- 409
           C +L  L   + +H  ++K  F  +L + N I+ +YA CG +  AR +FE          
Sbjct: 138 CLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTW 197

Query: 410 ---------------------RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
                                RM  RNV SWTSMI  +   G A+ A+  F KM++  + 
Sbjct: 198 NIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVK 257

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
            N VT + VL AC+  G +D G  I    +N +           ++D++ +   L EA +
Sbjct: 258 CNEVTVVAVLAACADLGALDLGMRIH-EYSNRHGFKRNVRISNTLIDMYVKCGCLEEACK 316

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELA 538
           + E M     VV W +++    +HG  E A
Sbjct: 317 VFEEME-ERTVVSWSAMIGGLAMHGRAEEA 345


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/601 (40%), Positives = 338/601 (56%), Gaps = 50/601 (8%)

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA--CGKILDARLMFDKMSYR 181
           L  + R   + E  Q+HG   K G   D    + L+    +   G +  AR +FD++   
Sbjct: 22  LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRP 81

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           +   W+ MI GY  +   +E L L+  M   +V  +      +L ACS    L   + +H
Sbjct: 82  NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIH 141

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
             II      + +  ++L+ +Y                               S++G ++
Sbjct: 142 AHIIKMGFGSEIYTTNSLLNVY-------------------------------SKSGDIK 170

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
            ARL+FDQ+ ++D                  EAL LF+ MQ  G+K D V ++S + ACA
Sbjct: 171 SARLLFDQVDQRD-----------------TEALNLFHRMQTAGIKLDNVALVSTLQACA 213

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
            LGVLDQ + IH YI K+    D  +   +IDMYAKCG LE A EVF +M  + V  WT+
Sbjct: 214 DLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTA 273

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI+ +AIHG  R AL +F KM+   ++PN +TF G+L ACSHAGLV E + +F SM   +
Sbjct: 274 MISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIH 333

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
              P  EHYGCMVDL GRA LL+EA EL+E MP  PN  IWG+L+ AC +HG +EL +  
Sbjct: 334 GFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQI 393

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
            K L+Q+DP H G  + L++I+A    W     +R+ MKE+G+ K   CS I +N   +E
Sbjct: 394 GKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHE 453

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           FL  D SH Q  +I   L +++  L+  GY P +   L+DLED+EK   I  HSEKLA+ 
Sbjct: 454 FLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVT 513

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           +GLIS+K    IRIVKNLRVCEDCH  IKL+SKVYAREI++RDRTRFH +KDG C+C DY
Sbjct: 514 FGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDY 573

Query: 722 W 722
           W
Sbjct: 574 W 574



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 212/438 (48%), Gaps = 66/438 (15%)

Query: 4   LSQPTKPLTLPTSTA-----ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFS 58
           L  PT  L+  ++ A     +  CS++  ++Q H Q+LK          L+L  +  S  
Sbjct: 5   LCTPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLK--------TGLILDEIPASKL 56

Query: 59  LP---TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI 115
           L    +    SL YA ++F +I  P + + N  IR  S S  P+ AL ++  ML   +  
Sbjct: 57  LAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPH 116

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           + ++FP +LKA +    L E  Q+H    K+GFGS+ +    L+ +Y   G I  ARL+F
Sbjct: 117 NAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLF 176

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           D++  RD                  E LNLF  M+ + ++ D + L   L AC+  G L 
Sbjct: 177 DQVDQRDT-----------------EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLD 219

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G+ +H +I  + + +D  L   LI MYA CG ++ A  +F K+  K + V TAM+SGY+
Sbjct: 220 QGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYA 279

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
             G+                                +EAL+ F +MQ  G++P+++T   
Sbjct: 280 IHGR-------------------------------GREALEWFMKMQTAGVEPNQMTFTG 308

Query: 356 VISACAHLGVLDQAQRIHLYIDK-NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-R 413
           +++AC+H G++ +A+ +   +++ + F   +     ++D+  + G L+ A E+ E M  +
Sbjct: 309 ILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVK 368

Query: 414 RNVISWTSMINAFAIHGD 431
            N   W +++NA  IHG+
Sbjct: 369 PNAAIWGALLNACHIHGN 386


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/640 (38%), Positives = 366/640 (57%), Gaps = 43/640 (6%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           ++F R       P+ A+K    + + GL  D  ++  ++K       + EG   + +   
Sbjct: 31  SEFTRLCYQRDLPR-AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEG---NLICRH 86

Query: 146 LGF-GSDP--FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202
           L F G  P  F+   L+ MY     + DA  +FD+M  R+++ W+ MI  Y +  +  + 
Sbjct: 87  LYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKA 146

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           L L   M   NV P+    S +L +C+    +S    +H  II   +  D  ++S LI +
Sbjct: 147 LELLVLMLRDNVRPNVYTYSSVLRSCN---GMSDVRMLHCGIIKEGLESDVFVRSALIDV 203

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           +A                               + G+ EDA  +FD+MV  D I W+++I
Sbjct: 204 FA-------------------------------KLGEPEDALSVFDEMVTGDAIVWNSII 232

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
            G+A+N+    AL+LF  M+  G   ++ T+ SV+ AC  L +L+   + H++I K  + 
Sbjct: 233 GGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YD 290

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            DL +NNA++DMY KCGSLE A  VF +M+ R+VI+W++MI+  A +G ++ AL  F +M
Sbjct: 291 QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERM 350

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
           K     PN +T +GVL+ACSHAGL+++G   F SM   Y I P  EHYGCM+DL G+A  
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGK 410

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
           L +A++L+  M   P+ V W +L+ ACRV   + LAE+AAK+++ LDP+  G   LLSNI
Sbjct: 411 LDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNI 470

Query: 563 YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
           YA  ++W  V E+R  M++RGI KE  CS IE+N +++ F+  D SH Q  ++ +KLN++
Sbjct: 471 YANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQL 530

Query: 623 ISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVC 682
           I  L   GYVP+ +  L DLE E+  + +  HSEKLAL +GL++   +  IRI KNLR+C
Sbjct: 531 IHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRIC 590

Query: 683 EDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            DCH F KL SK+  R IVIRD  R+HH++DG CSC DYW
Sbjct: 591 GDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 9/234 (3%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTT 63
           L    +P     S+ + SC+ ++ ++  H  I+K       ++ + ++  L         
Sbjct: 154 LRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIK----EGLESDVFVRSALIDVFAKLGE 209

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
           P     ALS+F ++    + V N  I   + + R   AL++F +M   G   ++ +   +
Sbjct: 210 PED---ALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSV 266

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L+A      L  GMQ H    K  +  D  +   LV MY  CG + DA  +F++M  RD+
Sbjct: 267 LRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDV 324

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           + WS MI G  QNG   E L LFE MK S  +P+ + +  +L ACS AG L  G
Sbjct: 325 ITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG 378


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/651 (36%), Positives = 361/651 (55%), Gaps = 47/651 (7%)

Query: 119 SFPP----ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
           SFPP    +  A      L     +H +    G   DPFV + L+  Y   G   +AR +
Sbjct: 15  SFPPDPHLLPTAFKSCPTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARAL 74

Query: 175 FDKMS--YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM-SNVEPDEMVLSKILSACSRA 231
           FD M    R +V WS ++  +   G  +    L EEM+    VEP+ +  + ++S  +R+
Sbjct: 75  FDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRS 134

Query: 232 GN------------------------------------LSYGEAVHEFIIDNNVALDAHL 255
           G                                     +S G+ +H + +      DA +
Sbjct: 135 GRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACV 194

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF----DQMV 311
            + LI MY  CG       +FD+    ++    A+++G SR  QV +A  +F    D+ V
Sbjct: 195 VTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGV 254

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           E +++ W+++++   +N    EA++ F EMQ  G +P+ VT+  V+ A A++  L   + 
Sbjct: 255 ELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRS 314

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
            H +  +  F  D+ V++A++DMYAKCG ++ AR +F+ M  RNV+SW +MI  +A++G+
Sbjct: 315 AHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGE 374

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
           A NA+  F+ M      P+ VTF  +L AC+ AGL +EGR  F  M NEY + P+ EHY 
Sbjct: 375 AVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYA 434

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           CMV L GRA  L EA +L+  MPF P+  IWGSL+ +CRVHG ++LAE AA++L  L+P+
Sbjct: 435 CMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPE 494

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
           + G  VLLSNIYA  K W  V  +R+ MK+ G+ KE+ CS IE+ N+V+  L  D SH  
Sbjct: 495 NAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPM 554

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS 671
              I EK+N++  +++  G+VP     L D+E++EK +++  HSEKLA+  GLIS+   +
Sbjct: 555 MTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTSPGT 614

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            +R++KNLR+C DCH  +K +S    REI +RD  RFHH+  G CSC D+W
Sbjct: 615 TLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGDFW 665



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 5/179 (2%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A++ F +M  +G   +  + P +L A A    L+ G   H    + GF  D +V + LV 
Sbjct: 277 AVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVD 336

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG++ DAR++FD M  R++V W+ MI GY   G     + +F  M     +PD + 
Sbjct: 337 MYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVT 396

Query: 221 LSKILSACSRAGNLSYGEAVHEFI-IDNNVALDAHLQ--STLITMYANCGCMDMAKGLF 276
            + +L+AC++AG    G   H F  + N   +   ++  + ++T+    G +D A  L 
Sbjct: 397 FTCLLAACTQAGLTEEGR--HYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLI 453


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/636 (35%), Positives = 358/636 (56%), Gaps = 36/636 (5%)

Query: 92  ISWSHRPKHALKVFLKMLNE-----GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKL 146
           I W +  +   +   ++L E      + ++  +   +L A +    LL   ++HG   + 
Sbjct: 371 IIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRH 430

Query: 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLF 206
           GF  D  V    V  Y  C  +  A  +F  M  + +  W+ +I  + QNG   + L+LF
Sbjct: 431 GFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLF 490

Query: 207 EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
             M  S ++PD   +  +L AC+R   L  G+ +H F++ N + LD  +  +L+++Y  C
Sbjct: 491 LVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQC 550

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
             M + K                               LIFD+M  K L+CW+ MI+G++
Sbjct: 551 SSMLLGK-------------------------------LIFDKMENKSLVCWNVMITGFS 579

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
           +N  P EAL  F +M   G+KP ++ +  V+ AC+ +  L   + +H +  K     D  
Sbjct: 580 QNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAF 639

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
           V  A+IDMYAKCG +E ++ +F+R+  ++   W  +I  + IHG    A+  F  M+++ 
Sbjct: 640 VTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKG 699

Query: 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
             P+  TF+GVL AC+HAGLV EG +    M N Y + PK EHY C+VD+ GRA  L EA
Sbjct: 700 GRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEA 759

Query: 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566
           L+LV  MP  P+  IW SL+++CR +G++E+ E  +K+LL+L+P+     VLLSN+YA  
Sbjct: 760 LKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGL 819

Query: 567 KRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL 626
            +W +V ++R+ MKE G+ K+  CS IE+   VY FL +D S  ++ +I +   ++  ++
Sbjct: 820 GKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKI 879

Query: 627 KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCH 686
              GY PD    L +LE+E K +++  HSEKLA+ +GL+++ K + +R+ KNLR+C DCH
Sbjct: 880 SKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCH 939

Query: 687 NFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           N IKLVSKV  R+I++RD  RFHH+K+G+C+C D+W
Sbjct: 940 NAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 190/384 (49%), Gaps = 35/384 (9%)

Query: 51  KLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLN 110
           +L+  +F       SSL  A  +F  +        N  I A + +  P  +L +FL M++
Sbjct: 436 ELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMD 495

Query: 111 EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD 170
            G+  DRF+   +L A AR + L  G ++HG   + G   D F+   L+ +Y  C  +L 
Sbjct: 496 SGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLL 555

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
            +L+FDKM  + +V W+VMI G+ QN L  E L+ F +M    ++P E+ ++ +L ACS+
Sbjct: 556 GKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQ 615

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
              L  G+ VH F +  +++ DA +   LI MYA CGCM+ ++ +FD+V  K+  V   +
Sbjct: 616 VSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVI 675

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           ++GY   G                               H  +A++LF  MQ  G +PD 
Sbjct: 676 IAGYGIHG-------------------------------HGLKAIELFELMQNKGGRPDS 704

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVF 408
            T L V+ AC H G++ +  + +L   +N +G   ++ +   ++DM  + G L  A ++ 
Sbjct: 705 FTFLGVLIACNHAGLVTEGLK-YLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLV 763

Query: 409 ERM-RRRNVISWTSMINAFAIHGD 431
             M    +   W+S++++   +GD
Sbjct: 764 NEMPDEPDSGIWSSLLSSCRNYGD 787



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 210/454 (46%), Gaps = 42/454 (9%)

Query: 29  KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKF 88
           ++ HA +   S SH  +N ++L   + +      +PS    +  +F         + N  
Sbjct: 112 RKVHALV---SASHKLRNDVVLSTRIIAMYSACGSPSD---SRGVFDAAKEKDLFLYNAL 165

Query: 89  IRAISWSHRPKHALKVFLKMLN-EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
           +   S +   + A+ +FL++L+   L  D F+ P + KA A    +  G  VH L  K G
Sbjct: 166 LSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAG 225

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207
             SD FV   L+ MYG CG +  A  +F+ M  R++V W+ ++    +NG F E   +F+
Sbjct: 226 GFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFK 285

Query: 208 EMKMSNVE---PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
            + +S  E   PD   +  ++ AC+  G +  G  VH       +  +  + ++L+ MY+
Sbjct: 286 RLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYS 345

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
            CG +  A+ LFD    KN+V    ++ GYS+ G   D R +F+                
Sbjct: 346 KCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEG---DFRGVFE---------------- 386

Query: 325 YAENNHPQEALKLFNEMQV-CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
                       L  EMQ    ++ ++VT+L+V+ AC+    L   + IH Y  ++ F  
Sbjct: 387 ------------LLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLK 434

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
           D  V NA +  YAKC SL+ A  VF  M  + V SW ++I A A +G    +L  F  M 
Sbjct: 435 DELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMM 494

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
           D  +DP+  T   +L AC+    +  G+EI   M
Sbjct: 495 DSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFM 528



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 134/251 (53%), Gaps = 6/251 (2%)

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
           L  ++V+ST +++ YS  G   D+R +FD   EKDL  ++A++SGY+ N   ++A+ LF 
Sbjct: 124 LRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFL 183

Query: 340 EM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           E+     + PD  T+  V  ACA +  ++  + +H    K     D  V NA+I MY KC
Sbjct: 184 ELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKC 243

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM---KDESIDPNGVTFI 455
           G +ESA +VFE MR RN++SW S++ A + +G        F ++   ++E + P+  T +
Sbjct: 244 GFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMV 303

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
            V+ AC+  G V  G  +   +  +  I  +      +VD++ +   L EA  L + M  
Sbjct: 304 TVIPACAAVGEVRMGM-VVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFD-MNG 361

Query: 516 APNVVIWGSLM 526
             NVV W +++
Sbjct: 362 GKNVVSWNTII 372



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 131/306 (42%), Gaps = 15/306 (4%)

Query: 356 VISACAHLGVLDQAQRIHLYID-KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           ++ AC H   +   +++H  +   +    D+ ++  II MY+ CGS   +R VF+  + +
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157

Query: 415 NVISWTSMINAFAIHGDARNAL-IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           ++  + ++++ ++ +   R+A+ +F   +    + P+  T   V  AC+    V+ G  +
Sbjct: 158 DLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAV 217

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            A           +     ++ ++G+   +  A+++ ETM    N+V W S+M AC  +G
Sbjct: 218 HALALKAGGFSDAFVG-NALIAMYGKCGFVESAVKVFETMR-NRNLVSWNSVMYACSENG 275

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI-LKERACSR 592
                    K+LL    + +G +  ++ +         VGE+R  M   G+  K      
Sbjct: 276 GFGECCGVFKRLLI--SEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEE 333

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYE--------KLNEVISELKPAGYVPDIHSALVDLED 644
           + +NN + +  +      +   +++          N +I      G    +   L +++ 
Sbjct: 334 VTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQR 393

Query: 645 EEKREV 650
           EEK  V
Sbjct: 394 EEKVRV 399


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/701 (34%), Positives = 400/701 (57%), Gaps = 42/701 (5%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83
           SLT ++  H  ++K   S+    S L   L+  +        SL  A  +F ++P+    
Sbjct: 16  SLTTLRAVHTNVIKSGFSY----SFLGHKLIDGY----IKCGSLAEARKLFDELPSRHIV 67

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
             N  I +     + K A++ +  ML EG+  D ++F  I KA ++   +  G + HGL 
Sbjct: 68  TWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLA 127

Query: 144 TKLGFGS-DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202
             LG    D FV + LV MY    K+ DA L+F ++  +D+V ++ +I GY Q+GL  E 
Sbjct: 128 VVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEA 187

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           L +FE+M    V+P+E  L+ IL  C   G+L  G+ +H  ++ + +      Q++L+TM
Sbjct: 188 LKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTM 247

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           Y+ C                                 +ED+  +F+Q+   + + W++ +
Sbjct: 248 YSRC-------------------------------NMIEDSIKVFNQLDYANQVTWTSFV 276

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
            G  +N   + A+ +F EM  C + P+  T+ S++ AC+ L +L+  ++IH    K    
Sbjct: 277 VGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLD 336

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
           G+     A+I++Y KCG+++ AR VF+ +   +V++  SMI A+A +G    AL  F ++
Sbjct: 337 GNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHEALELFERL 396

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
           K+  + PNGVTFI +L AC++AGLV+EG +IFAS+ N +NI    +H+ CM+DL GR+  
Sbjct: 397 KNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHNIELTIDHFTCMIDLLGRSRR 456

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
           L EA  L+E +   P+VV+W +L+ +C++HGE+E+AE    ++L+L P   G  +LL+N+
Sbjct: 457 LEEAAMLIEEVR-NPDVVLWRTLLNSCKIHGEVEMAEKVMSKILELAPGDGGTHILLTNL 515

Query: 563 YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
           YA   +W  V E++ ++++  + K  A S ++++ EV+ F+  D SH ++ +I+E L+ +
Sbjct: 516 YASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVDREVHTFMAGDLSHPRSLEIFEMLHGL 575

Query: 623 ISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS-KKDSCIRIVKNLRV 681
           + ++K  GY P+    L DL++E+K   + +HSEKLA+ Y L  +  + + IRI KNLRV
Sbjct: 576 MKKVKTLGYNPNTRFVLQDLDEEKKISSLYYHSEKLAIAYALWKTIGRTTTIRIFKNLRV 635

Query: 682 CEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           C DCH++IK VS +  R+I+ RD  RFHH+K G+CSCKDYW
Sbjct: 636 CGDCHSWIKFVSLLTGRDIIARDSKRFHHFKGGLCSCKDYW 676


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 253/671 (37%), Positives = 372/671 (55%), Gaps = 64/671 (9%)

Query: 76  QIPAPPSRVSNKFIRAISWSH--------------RPKHALKVFLKMLN----EGLTIDR 117
           QI +P  R    F R   W H              RP    K  L +L+      L  DR
Sbjct: 17  QIVSPCKRDLGSFRRL--WQHSESTFCVIDDRNLLRPSLNSKTGLHVLDLIDCGSLEPDR 74

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
             +  +LK   +   L EG  VH       F  D  +Q  L+ MY  CG +  AR +FD+
Sbjct: 75  TLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDE 134

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           M +RD+V W+ MI GY QN    + L LF  M     EP+E  LS ++  C    + + G
Sbjct: 135 MPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCG 194

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANC---GCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             +H                      A C   GC              N+ V +++V  Y
Sbjct: 195 RQIH----------------------ACCWKYGCHS------------NVFVGSSLVDMY 220

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
           +R G + +A L+FD++  K+ + W+A+I+GYA     +EAL LF  MQ  G +P + T  
Sbjct: 221 ARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYS 280

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           +++S+C+ +G L+Q + +H ++ K++      V N ++ MYAK GS+  A +VF+++ + 
Sbjct: 281 ALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKV 340

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           +V+S  SM+  +A HG  + A   F++M    I+PN +TF+ VL ACSHA L+DEG+  F
Sbjct: 341 DVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYF 400

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
             M  +YNI PK  HY  +VDL GRA LL +A   +E MP  P V IWG+L+ A ++H  
Sbjct: 401 GLM-RKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKN 459

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
            E+  +AA+++ +LDP + G   LL+NIYA   RW+DV ++RK MK+ G+ KE ACS +E
Sbjct: 460 TEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVE 519

Query: 595 MNNEVYEFLTADRSHKQTDQI---YEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVI 651
           + N V+ F+  D +H Q ++I   +EKLN+ I E+   GYVPD    L+ ++ +EK   +
Sbjct: 520 VENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEI---GYVPDTSHVLLFVDQQEKELNL 576

Query: 652 LWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHY 711
            +HSEKLAL + L+++   S IRI+KN+RVC DCH+ IK VS V  REI++RD  RFHH+
Sbjct: 577 QYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHF 636

Query: 712 KDGVCSCKDYW 722
            DG CSC DYW
Sbjct: 637 CDGFCSCGDYW 647



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 194/420 (46%), Gaps = 46/420 (10%)

Query: 16  STAISSCSSLTHMKQ---THAQILKLSHSHH--SQNSLLLKLLLTSFSLPTTTPSSLYYA 70
           +T +  C+ L  +K+    H  +L  +  H    QNSLL                SL  A
Sbjct: 78  NTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMY---------ARCGSLEGA 128

Query: 71  LSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARA 130
             +F ++P          I   + + R   AL +F +ML++G   + F+   ++K     
Sbjct: 129 RRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYM 188

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
                G Q+H    K G  S+ FV + LV MY  CG + +A L+FDK+  ++ V W+ +I
Sbjct: 189 ASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALI 248

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
            GY + G  +E L LF  M+     P E   S +LS+CS  G L  G+ +H  ++ ++  
Sbjct: 249 AGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQK 308

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
           L  ++ +TL+ MYA  G +  A+ +FDK++  ++V   +M+ GY++ G  ++A   FD+M
Sbjct: 309 LVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEM 368

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
           +                                 G++P+ +T LSV++AC+H  +LD+ +
Sbjct: 369 IR-------------------------------FGIEPNDITFLSVLTACSHARLLDEGK 397

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIH 429
                + K      +     I+D+  + G L+ A+   E M     ++ W +++ A  +H
Sbjct: 398 HYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMH 457


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/650 (34%), Positives = 382/650 (58%), Gaps = 33/650 (5%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           IF ++    +   N  I   S     + ++K+F++M+N+    D  +   IL+A      
Sbjct: 332 IFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGD 390

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L  G  VH      G+  D      L+ MY  CG +L ++ +F  M  +D V W+ MI+ 
Sbjct: 391 LEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINV 450

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y QNG FDE + LF+ MK ++V+PD +    +LS  ++ G+L  G+ +H           
Sbjct: 451 YIQNGSFDEAMKLFKMMK-TDVKPDSVTYVMLLSMSTQLGDLXLGKELH----------- 498

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
                            D+AK  F+     N+VVS  +V  Y++ G++ D+  +F+ M  
Sbjct: 499 ----------------CDLAKMGFNS----NIVVSNTLVDMYAKCGEMGDSLKVFENMKA 538

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           +D+I W+ +I+    +      L++ + M+  G+ PD  TMLS++  C+ L    Q + I
Sbjct: 539 RDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEI 598

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H  I K     D+ V N +I+MY+KCGSL ++ +VF+ M+ ++V++WT++I+A  ++G+ 
Sbjct: 599 HGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEG 658

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
           + A+  F +M+   I P+ V F+ +++ACSH+GLV+EG   F  M  +Y I P+ EHY C
Sbjct: 659 KKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYAC 718

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           +VDL  R+ LL +A + + +MP  P+  IWG+L++ACR+ G+ E+A+  ++++++L+PD 
Sbjct: 719 VVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDD 778

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
            G  VL+SN+YA   +W  V  +RKS+K RG+ K+  CS +E+ N+VY F T  +  +Q 
Sbjct: 779 TGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQF 838

Query: 613 DQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSC 672
           +++ + L  +   +   GY+ ++   L D++++EKR+++  HSE+LA+ +GL+++K  + 
Sbjct: 839 EEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTP 898

Query: 673 IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           ++++KNLRVCEDCH   K +SK+  RE+++RD  RFH +KDG CSC DYW
Sbjct: 899 LQVMKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/527 (28%), Positives = 265/527 (50%), Gaps = 58/527 (11%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
           S A++S ++ T + + H+ I+ L   H    S  L      F  PT++        S+F 
Sbjct: 79  SRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSS-------FSVF- 130

Query: 76  QIPAPPSRVS--NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           ++ +P + V   N  IRA++ +     AL ++ +     L  D ++FP ++ A A   GL
Sbjct: 131 RLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA---GL 187

Query: 134 LE---GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
           L+      +H     +GFGSD ++   L+ MY     +  AR +F++M  RD+V W+ +I
Sbjct: 188 LDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLI 247

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
            GY  NG ++E L ++   +   V PD   +S +L AC   G++  G+ +H  I    + 
Sbjct: 248 SGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIK 307

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
            D  + + L++MY     +   + +FDK++L++ V    M+ GYS+ G  E         
Sbjct: 308 KDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYE--------- 358

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
                                 E++KLF EM V   KPD +T+ S++ AC HLG L+  +
Sbjct: 359 ----------------------ESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGK 395

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
            +H Y+  + +  D   +N +I+MYAKCG+L +++EVF  M+ ++ +SW SMIN +  +G
Sbjct: 396 YVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNG 455

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI---FASMTNEYNIPPKY 487
               A+  F  MK + + P+ VT++ +L   +  G +  G+E+    A M    NI    
Sbjct: 456 SFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVS- 513

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
                +VD++ +   + ++L++ E M  A +++ W +++A+C VH E
Sbjct: 514 ---NTLVDMYAKCGEMGDSLKVFENMK-ARDIITWNTIIASC-VHSE 555



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 109/245 (44%), Gaps = 2/245 (0%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           +L +F  + A      N  I +   S      L++  +M  EG+T D  +   IL   + 
Sbjct: 529 SLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSL 588

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
                +G ++HG   KLG  SD  V   L+ MY  CG + ++  +F  M  +D+V W+ +
Sbjct: 589 LAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTAL 648

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDNN 248
           I      G   + +  F EM+ + + PD +    I+ ACS +G +  G    H    D  
Sbjct: 649 ISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYK 708

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLIF 307
           +       + ++ + +    +D A+     + LK +  +  A++S    +G  E A+ + 
Sbjct: 709 IEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVS 768

Query: 308 DQMVE 312
           ++++E
Sbjct: 769 ERIIE 773


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/722 (32%), Positives = 385/722 (53%), Gaps = 42/722 (5%)

Query: 5   SQPTK---PLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           S PT+   PL    ++ +     L  ++Q HAQI+    +H   N+ L   L+ ++    
Sbjct: 14  SNPTQRLCPLAQSHASILRKLKDLKPLQQIHAQIITSGLTH---NTFLSNSLMNAY---- 66

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
                L  A  IF   P          I  ++ +     A+ VF +M       +  +  
Sbjct: 67  VYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTIS 126

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
            +L A A    +     VH    + GF  + FV+T LV MY   G +  AR +F+ MS R
Sbjct: 127 SVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSER 186

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           ++V W+ ++ GY  +G  +E ++LF  M+   +  D   +  ++ A    G L  G  +H
Sbjct: 187 NVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIH 246

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
            FII      D H+++ L+ +Y +  C+D                               
Sbjct: 247 GFIIRTGYENDKHIKTALMDIYVSHNCVD------------------------------- 275

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISAC 360
           DA  +F +M  KD+  W+ M++G++   H   A+K FN+M  +  +K D + ++ ++S+C
Sbjct: 276 DAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSC 335

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           +H G L Q +R+H    K  F  ++ V +A+IDMYA CG+LE A+  F  M  ++V+ W 
Sbjct: 336 SHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWN 395

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +MI    ++G   +A+  F +MK   +DP+  TF+ VLYACSHAG+V EG +IF  M   
Sbjct: 396 AMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKT 455

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
            +  P  +HY C++D+ GRA  L  A   +  MPF P+  ++ +L+ ACR+HG I+L   
Sbjct: 456 SHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHE 515

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
            ++++ +++P+  G  VLLSN+YA    W+ V   R S++ + + K+   S IE+N E+Y
Sbjct: 516 ISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIY 575

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
            F+  ++ H Q  +I   L  +I ++K AGYVP+ +  L D+ D+ K++++  HSEK+A+
Sbjct: 576 TFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAI 635

Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
            +GL+ +K  + IRI KNLR C DCH+  K VSKV+ R +VI+D  RFH ++DGVCSC+D
Sbjct: 636 AFGLMRTKPGTIIRITKNLRTCNDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRD 695

Query: 721 YW 722
           YW
Sbjct: 696 YW 697


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/536 (41%), Positives = 318/536 (59%), Gaps = 33/536 (6%)

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI    ++G+  + L  +  M  ++V P +   S IL +C+ +G    GEA H  I+   
Sbjct: 1   MIRVSLESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMG 60

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D  LQ+ L+  YA                               + G VE+AR +FD
Sbjct: 61  FEYDMILQTGLLDFYA-------------------------------KHGYVEEARNLFD 89

Query: 309 QMVEKDL--ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
            M E++   + W+ MIS Y +      A+ +F +MQ   +KP +VTM+S++SACAHLG L
Sbjct: 90  NMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGAL 149

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           D  + IH YI       D+ + NA+IDMY KCG+LE+A +VF  + R+N+  W S+I   
Sbjct: 150 DMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGL 209

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
            ++G    A+  F  M+ E I P+GVTF+G+L  CSH+GL+  G+  F+ M   Y + P 
Sbjct: 210 GMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPG 269

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            EHYGCMVDL GRA  L+EALEL+  MP  PN ++ GSL+ AC++H + +L E   +QLL
Sbjct: 270 VEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLL 329

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           +LDP   G  V LSN+YA   RW DV   RK M +RG+ K   CS IE+NN V+EF+  D
Sbjct: 330 ELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGD 389

Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS 666
            SH Q  QI   L+E+  ELK  G+VP+  + L D+E+EEK   I +HSE++A+ +GL+S
Sbjct: 390 TSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMS 449

Query: 667 SKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +     IR+VKNLR C DCH+ +KL+S  + REI++RDR RFHH+++G CSC DYW
Sbjct: 450 TPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 505



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 174/367 (47%), Gaps = 42/367 (11%)

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM 161
           L  +  ML   +   + SF  IL++ A +     G   H    K+GF  D  +QTGL+  
Sbjct: 15  LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74

Query: 162 YGACGKILDARLMFDKMSYRDI--VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
           Y   G + +AR +FD M+ R+   V W+ MI  Y Q G F   +++F++M+  NV+P E+
Sbjct: 75  YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEV 134

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
            +  +LSAC+  G L  GE +H +I    + +D  L + LI MY  CG ++ A  +F   
Sbjct: 135 TMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFH-- 192

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
                        G SR                K++ CW+++I G   N   +EA+  F 
Sbjct: 193 -------------GLSR----------------KNIFCWNSIIVGLGMNGRGEEAIAAFI 223

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK--NAFGGDLRVNN--AIIDMY 395
            M+  G+KPD VT + ++S C+H G+L   QR   Y  +    +G +  V +   ++D+ 
Sbjct: 224 VMEKEGIKPDGVTFVGILSGCSHSGLLSAGQR---YFSEMLGVYGLEPGVEHYGCMVDLL 280

Query: 396 AKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDAR-NALIFFNKMKDESIDPNGVT 453
            + G L+ A E+   M  + N +   S++ A  IH D +    +    ++ +  D     
Sbjct: 281 GRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYV 340

Query: 454 FIGVLYA 460
           F+  LYA
Sbjct: 341 FLSNLYA 347



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 65/138 (47%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A+ +F +M +E +     +   +L A A    L  G  +HG         D  +   L+ 
Sbjct: 117 AISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALID 176

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG +  A  +F  +S ++I  W+ +I G   NG  +E +  F  M+   ++PD + 
Sbjct: 177 MYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVT 236

Query: 221 LSKILSACSRAGNLSYGE 238
              ILS CS +G LS G+
Sbjct: 237 FVGILSGCSHSGLLSAGQ 254


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/701 (34%), Positives = 386/701 (55%), Gaps = 41/701 (5%)

Query: 23  SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPS 82
           + L H ++ HA +LK     + Q + LL +      + +        AL +F +I     
Sbjct: 279 AQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGWVDS--------ALRVFREIGDKDY 330

Query: 83  RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGL 142
              N  +     +     A+  F +M+  G   D      +L A+     L+ G +VH  
Sbjct: 331 ISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAY 390

Query: 143 GTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202
             K    SD  +   L+ MY  C  +  +  +FD+M  +D V W+ +I  Y Q+  + E 
Sbjct: 391 AVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEA 450

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           +  F   +   ++ D M++  IL ACS   ++S  + VH + I N + LD  L++ +I +
Sbjct: 451 IGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIIDI 509

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           Y  CG                               +V  A  IF+ + +KD++ W++M+
Sbjct: 510 YGECG-------------------------------EVCYALNIFEMLDKKDIVTWTSMV 538

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
           + +AEN    EA+ LF +M   G++PD V ++ ++ A A L  L + + IH ++ +  F 
Sbjct: 539 NCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFP 598

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            +  V ++++DMY+ CGS+  A +VF+  + ++V+ WT+MINA  +HG  + A+  F +M
Sbjct: 599 VEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRM 658

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
            +  + P+ V+F+ +LYACSH+ LVDEG+     M ++Y + P  EHY C+VDL GR+  
Sbjct: 659 LETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQ 718

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
             EA + +++MP  P  V+W +L+ ACR+H   ELA  A  +LL+L+PD+ G  VL+SN+
Sbjct: 719 TEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNV 778

Query: 563 YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
           +A+  +W +V E+R  M E+G+ K+ ACS IE+ N V+ F   D SH+ +  I+ KL E+
Sbjct: 779 FAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEI 838

Query: 623 ISELKPAG-YVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRV 681
             +L+  G YV D    L D+ +EEK +++  HSE+LA+ +GLIS+   + +RI KNLRV
Sbjct: 839 TEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRV 898

Query: 682 CEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           C DCH F KLVSK++ REIV+RD  RFHH+  G CSC D+W
Sbjct: 899 CGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 170/368 (46%), Gaps = 42/368 (11%)

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLG-FGSDP--FVQTGLVGMYGACGKILDAR 172
           D + +   L A+ RA  + EG Q+H      G  G D   F+ T L+ MYG CG++ DA 
Sbjct: 56  DHYGWVLDLVAVRRA--VSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAH 113

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS----NVEPDEMVLSKILSAC 228
            +FD M  R +  W+ +I     +G   E + ++  M+ S       PD   L+ +L AC
Sbjct: 114 RLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKAC 173

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
              G+   G  VH   + + +     + + L+ MYA CG +D A  +F+           
Sbjct: 174 GAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFE----------- 222

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
                + R G              +D+  W++ ISG  +N    EAL LF  MQ  G   
Sbjct: 223 -----WMRDG--------------RDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSM 263

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN-NAIIDMYAKCGSLESAREV 407
           +  T + V+  CA L  L+  + +H  + K   G +  +  NA++ MYA+CG ++SA  V
Sbjct: 264 NSYTTVGVLQVCAELAQLNHGRELHAALLK--CGTEFNIQCNALLVMYARCGWVDSALRV 321

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F  +  ++ ISW SM++ +  +     A+ FF +M     +P+    + +L A  H G +
Sbjct: 322 FREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRL 381

Query: 468 DEGREIFA 475
             GRE+ A
Sbjct: 382 INGREVHA 389



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 165/349 (47%), Gaps = 32/349 (9%)

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ--- 342
           ++T ++  Y + G++ DA  +FD M  + +  W+A+I     +    EA+ ++  M+   
Sbjct: 95  LATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASE 154

Query: 343 -VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
            V G  PD  T+ SV+ AC   G       +H    K+       V NA++ MYAKCG L
Sbjct: 155 PVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLL 214

Query: 402 ESAREVFERMRR-RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +SA  VFE MR  R+V SW S I+    +G    AL  F +M+ +    N  T +GVL  
Sbjct: 215 DSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQV 274

Query: 461 CSHAGLVDEGREIFASM---TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           C+    ++ GRE+ A++     E+NI         ++ ++ R   +  AL +   +    
Sbjct: 275 CAELAQLNHGRELHAALLKCGTEFNI-----QCNALLVMYARCGWVDSALRVFREIG-DK 328

Query: 518 NVVIWGSLMAACRVHGEI--ELAEFAAKQLLQ-LDPDHDGALVLLSNIYAKDKRWQDVGE 574
           + + W S++ +C V   +  E  +F  + +    +PDH   + LLS           VG 
Sbjct: 329 DYISWNSML-SCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSA----------VGH 377

Query: 575 LRKSMKERGI----LKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKL 619
           L + +  R +    +K+R  S +++ N + +      S + + ++++++
Sbjct: 378 LGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRM 426


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/553 (39%), Positives = 347/553 (62%), Gaps = 6/553 (1%)

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
           L+F ++   +   +S +I  Y +NG F   + L+  M  +NV P     S + S      
Sbjct: 67  LLFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLK--- 123

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
           N S G  +H          D ++ +T+I MY   G +D A+ +FD++  +++V  T ++ 
Sbjct: 124 NPSLGSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIV 183

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
            Y+R+G ++ A  +F  +  KD++ W++M++GY++N  P++AL+ F +M+  G+  D++T
Sbjct: 184 AYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEIT 243

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGG--DLRVNNAIIDMYAKCGSLESAREVFER 410
           ++  ISACA LGV   A  I    + + FG   ++ V +A+IDMY+KCG++E A  VF+ 
Sbjct: 244 LVGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKG 303

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M+  NV S++SMI  FA+HG AR+A+  F +M +  I PN VTF+G+  ACSHAG+V++G
Sbjct: 304 MKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQG 363

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
           +++F +M   Y + P  +HY CM DL GRA  L +AL+LV+TMP  PN  +WG+L+ A  
Sbjct: 364 QQLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASH 423

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
           +HG  ++AE A++ L +L+PD+ G  +LLS  YA   +W DV  +RK M+E+ + K   C
Sbjct: 424 IHGNPDVAEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGC 483

Query: 591 SRIEMNNE-VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
           S +E  N  ++EF   D  H + ++I + L++++  LK  GY P ++S   D++DE KR 
Sbjct: 484 SWVEAKNGIIHEFFAGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRC 543

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
           +++ HSEKLAL YGL+S+   S I+I+KNLR+CEDCH  +   SK+  R+I++RD  RFH
Sbjct: 544 LLVSHSEKLALAYGLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFH 603

Query: 710 HYKDGVCSCKDYW 722
           H+ +G CSC ++W
Sbjct: 604 HFLNGACSCNNFW 616



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 205/450 (45%), Gaps = 79/450 (17%)

Query: 20  SSCSSLTHMKQTHAQILKLSHSHHSQNSL--LLKLLLTSFSLPTTTPSSLYYALSIFSQI 77
           S C++L H KQ HA I + ++ H S   +  LL+ + T   +P  T     Y   +FSQ+
Sbjct: 19  SHCTTLNHAKQLHAHIYR-NNLHQSSYVITNLLRFITTLPHIPVHT-----YPHLLFSQV 72

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
            +P   + +  IRA + +    H+++++  MLN  ++   F+F  +   +        G 
Sbjct: 73  HSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPS---LGS 129

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV------------- 184
           Q+H      GF +D +V   ++ MY   G +  AR +FD+M +RD+V             
Sbjct: 130 QLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSG 189

Query: 185 ------------------PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS 226
                              W+ M+ GY QN +  + L  F +M+ + V  DE+ L   +S
Sbjct: 190 DMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAIS 249

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAH--LQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           AC++ G   Y + + E    +     ++  + S LI MY+ CG                 
Sbjct: 250 ACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCG----------------- 292

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
                          VE+A  +F  M E ++  +S+MI G+A +   + A+KLF EM   
Sbjct: 293 --------------NVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLEN 338

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLE 402
           G+KP+ VT + + +AC+H G+++Q Q++   + K  +G     ++   + D+  + G LE
Sbjct: 339 GIKPNHVTFVGLFTACSHAGMVEQGQQLFGAM-KECYGVSPTADHYACMADLLGRAGHLE 397

Query: 403 SAREVFERM-RRRNVISWTSMINAFAIHGD 431
            A ++ + M    N   W +++ A  IHG+
Sbjct: 398 KALQLVQTMPMEPNGGVWGALLGASHIHGN 427


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 252/706 (35%), Positives = 395/706 (55%), Gaps = 42/706 (5%)

Query: 22  CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPP 81
           C  L  +++ HAQI   +     +N+ L  +L+ ++S       SL+ A   F +I    
Sbjct: 45  CRGLDEVRKLHAQI---AARKLDRNTFLGNVLVDAYS----KHGSLHGAQLAFGRITLHN 97

Query: 82  SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG 141
           +   N  + A + +  P+ A  +F  M ++G+  +  +    L A   A  L  G +++ 
Sbjct: 98  AHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNE 157

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201
           L        D  V++ L+ MYG C +I +A   FD+   +D+V W+ MI  Y  N     
Sbjct: 158 LIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSR 217

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
            L L   M +  ++        +L AC+   +L  G A H+       A+     ST   
Sbjct: 218 ALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQ----RAAAIGLDRSST--- 270

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
                                  VV+  +V+ Y + G+V+DAR + D M  +  + W+AM
Sbjct: 271 -----------------------VVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAM 307

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN-A 380
           I+ YA+N +  EA+ LF  M + G +P  +T++SV+ +CA LG L   +RIH  I  + +
Sbjct: 308 IAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPS 367

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFE--RMRRRNVISWTSMINAFAIHGDARNALIF 438
           F   L + NA+I MY KCG+LE AREVFE   +R R+V++WT+MI A+A +G    A+  
Sbjct: 368 FSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNGVGEEAIEL 427

Query: 439 FNKMK-DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
           F +M  D   +PN VTF+ VL ACSH G +++  E F SM  ++ +PP  +HY C+VDL 
Sbjct: 428 FQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLL 487

Query: 498 GRANLLREALELV-ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
           GRA  L EA +L+     F  +VV W + ++AC+++G++E ++ AAK++ +L+P++    
Sbjct: 488 GRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGR 547

Query: 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           VLLSN+YA   R  DV  +R  MK  G+ K    S IE+NN V+EF+ +D SH +  +IY
Sbjct: 548 VLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIY 607

Query: 617 EKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIV 676
            +L  +  E+K AGYVPD    L D+++E+K +++ +HSE+LA+  G+IS+   + +R+V
Sbjct: 608 SELERLHREIKEAGYVPDTKMVLRDVDEEKKVQLLGYHSERLAMALGIISTPPGTTLRVV 667

Query: 677 KNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KNLRVC DCH   K +S++  R+I++RD +RFHH+KDGVCSC DYW
Sbjct: 668 KNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 713


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/661 (36%), Positives = 359/661 (54%), Gaps = 55/661 (8%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I + S + R   AL     M+ EG+  D  +F  +L A +  + L  G ++H    +
Sbjct: 185 NSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALR 244

Query: 146 LG-FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
                 + FV + LV MY  CG++   RL+FD +  R I  W+ MI GY Q+   ++ L 
Sbjct: 245 TDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALM 304

Query: 205 LFEEMKMS-NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
           LF EM+ +  +  +   +S I+ A  R   +S  E +H ++I   +  + +LQ+ LI MY
Sbjct: 305 LFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMY 364

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
                                          SR G ++ ++ IFD M ++D++ W+ +I+
Sbjct: 365 -------------------------------SRMGDIKTSKRIFDSMEDRDIVSWNTIIT 393

Query: 324 GYAENNHPQEALKLFNEMQ----------------VCGMKPDKVTMLSVISACAHLGVLD 367
            Y       +AL L +EMQ                    KP+ +T+++V+  CA L  L 
Sbjct: 394 SYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALA 453

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           + + IH Y  +N     + V +A++DMYAKCG L  AR VF++M  RNVI+W  +I A+ 
Sbjct: 454 KGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYG 513

Query: 428 IHGDARNALIFFNKM-----KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           +HG  + +L  F  M     K   + P  VTFI +  +CSH+G+VDEG  +F  M NE+ 
Sbjct: 514 MHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHG 573

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFA-PNVVIWGSLMAACRVHGEIELAEFA 541
           I P  +HY C+VDL GRA  + EA  LV TMP     V  W SL+ ACR++  IE+ E A
Sbjct: 574 IEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIA 633

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
           A+ LLQL PD     VLLSNIY+    W     LR+ MK  G+ KE  CS IE  +EV++
Sbjct: 634 AENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHK 693

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           FL  D SH Q++++++ L  +   LK  GYVPD    L D+++EEK  ++  HSEKLA+ 
Sbjct: 694 FLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIA 753

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           +G++++   + IR+ KNLRVC DCH   K +SK+  REI++RD  RFHH+KDG CSC DY
Sbjct: 754 FGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDY 813

Query: 722 W 722
           W
Sbjct: 814 W 814



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 137/538 (25%), Positives = 245/538 (45%), Gaps = 60/538 (11%)

Query: 18  AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI 77
           A++    L   KQ HA + K  +   S  S+ +   L +          L  A  +F +I
Sbjct: 19  AVAGIQELYLGKQIHAHVFKFGYGSFS--SVTIDNTLVNM---YGKCGGLGDAYKVFDRI 73

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA---IARAEGLL 134
                   N  I A+      + A+K F  ML EG     F+   +  A   + + +GL 
Sbjct: 74  TERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLW 133

Query: 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
            G Q+HG   + G     F    L+ MY   G++ DA+ +      RD+V W+ MI  + 
Sbjct: 134 LGKQIHGCCFRKGHWR-TFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFS 192

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII-DNNVALDA 253
           QN  F E L     M +  V+PD +  + +L ACS    L  G+ +H + +  ++V  ++
Sbjct: 193 QNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENS 252

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
            + S L+ MY NCG ++  + +FD VL + + +  AM++GY                   
Sbjct: 253 FVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGY------------------- 293

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQ-VCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
                       A++ H ++AL LF EM+   G+  +  TM S++ A      + + + I
Sbjct: 294 ------------AQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGI 341

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H Y+ K     +  + NA+IDMY++ G +++++ +F+ M  R+++SW ++I ++ I G +
Sbjct: 342 HGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRS 401

Query: 433 RNALIFFNKMK-------------DES---IDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
            +AL+  ++M+             DE      PN +T + VL  C+    + +G+EI A 
Sbjct: 402 SDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAY 461

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
                 +  +      +VD++ +   L  A  + + MP   NV+ W  ++ A  +HG+
Sbjct: 462 AIRNL-LASQVTVGSALVDMYAKCGCLNLARRVFDQMPIR-NVITWNVIIMAYGMHGK 517



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 170/347 (48%), Gaps = 48/347 (13%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFG--SDPFVQTGLVGMYGAC 165
           M+  G + D F+FP +LKA+A  + L  G Q+H    K G+G  S   +   LV MYG C
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           G + DA  +FD+++ RD V W+ +I    +   ++  +  F  M M   EP    L  + 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 226 SACS---RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            ACS   +   L  G+ +H                         GC       F K   +
Sbjct: 121 LACSNLRKRDGLWLGKQIH-------------------------GC------CFRKGHWR 149

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
               + A+++ Y++ G+++DA+ +     ++DL+ W++MIS +++N    EAL     M 
Sbjct: 150 TF-SNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMV 208

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY------IDKNAFGGDLRVNNAIIDMYA 396
           + G+KPD VT  SV+ AC+HL +L   + IH Y      + +N+F     V +A++DMY 
Sbjct: 209 LEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSF-----VGSALVDMYC 263

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
            CG +ES R VF+ +  R +  W +MI  +A       AL+ F +M+
Sbjct: 264 NCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEME 310



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 148/327 (45%), Gaps = 42/327 (12%)

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M  S   PD      +L A +    L  G+ +H           AH+             
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIH-----------AHV------------- 36

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
                G F  V + N +V+      Y + G + DA  +FD++ E+D + W+++IS     
Sbjct: 37  FKFGYGSFSSVTIDNTLVNM-----YGKCGGLGDAYKVFDRITERDQVSWNSIISALCRF 91

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG-----G 383
              + A+K F  M + G +P   T++S+  AC++L      +R  L++ K   G     G
Sbjct: 92  EEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNL-----RKRDGLWLGKQIHGCCFRKG 146

Query: 384 DLRV--NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNK 441
             R   NNA++ MYAK G L+ A+ +      R++++W SMI++F+ +     AL+F   
Sbjct: 147 HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRL 206

Query: 442 MKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501
           M  E + P+GVTF  VL ACSH  L+  G+EI A      ++         +VD++    
Sbjct: 207 MVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCG 266

Query: 502 LLREALELVETMPFAPNVVIWGSLMAA 528
            + E+  LV        + +W +++A 
Sbjct: 267 QV-ESGRLVFDSVLDRKIGLWNAMIAG 292


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/662 (36%), Positives = 361/662 (54%), Gaps = 56/662 (8%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I + S S R   AL  F  M+ EG+ +D  +   +L A +  E L  G ++H    +
Sbjct: 266 NTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLR 325

Query: 146 LG-FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
                 + FV + LV MY  C ++   R +FD +  R I  W+ MI GY +NGL ++ L 
Sbjct: 326 NNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALI 385

Query: 205 LFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
           LF EM K++ + P+   ++ ++ AC      S  E++H + +      D ++Q+ L    
Sbjct: 386 LFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNAL---- 441

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
                MDM                      YSR G+++ +  IFD M  +D + W+ MI+
Sbjct: 442 -----MDM----------------------YSRMGKMDISETIFDSMEVRDRVSWNTMIT 474

Query: 324 GYAENNHPQEALKLFNEMQVC-----------------GMKPDKVTMLSVISACAHLGVL 366
           GY  +     AL L +EMQ                     KP+ +T+++V+  CA L  +
Sbjct: 475 GYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAI 534

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
            + + IH Y  +N    D+ V +A++DMYAKCG L  +R VF  M  +NVI+W  +I A 
Sbjct: 535 AKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMAC 594

Query: 427 AIHGDARNALIFFNKMKDES-----IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
            +HG    AL  F  M  E+       PN VTFI V  ACSH+GL+ EG  +F  M +++
Sbjct: 595 GMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDH 654

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFA-PNVVIWGSLMAACRVHGEIELAEF 540
            + P  +HY C+VDL GRA  L EA ELV TMP     V  W SL+ ACR+H  +EL E 
Sbjct: 655 GVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEV 714

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
           AAK LL L+P+     VLLSNIY+    W    E+RK+M++ G+ KE  CS IE  +EV+
Sbjct: 715 AAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVH 774

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
           +F+  D SH Q++Q++  L  +  +++  GYVPD    L +++++EK  ++  HSEKLA+
Sbjct: 775 KFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAI 834

Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
            +G++++   + IR+ KNLRVC DCH   K +SK+  REI++RD  RFHH+K+G CSC D
Sbjct: 835 AFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGD 894

Query: 721 YW 722
           YW
Sbjct: 895 YW 896



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 131/487 (26%), Positives = 225/487 (46%), Gaps = 54/487 (11%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR--- 129
           +F +I        N FI A+    + + AL+ F  M  E + +  F+   +  A +    
Sbjct: 150 VFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGV 209

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
             GL  G Q+HG   ++G     F    L+ MY   G++ D++ +F+    RD+V W+ M
Sbjct: 210 MHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTM 268

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I  + Q+  F E L  F  M +  VE D + ++ +L ACS    L  G+ +H +++ NN 
Sbjct: 269 ISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNND 328

Query: 250 ALD-AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
            ++ + + S L+ MY NC  ++  + +FD +L + + +  AM+SGY+R G  E A ++F 
Sbjct: 329 LIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFI 388

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           +M+                              +V G+ P+  TM SV+ AC H      
Sbjct: 389 EMI------------------------------KVAGLLPNTTTMASVMPACVHCEAFSN 418

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            + IH Y  K  F  D  V NA++DMY++ G ++ +  +F+ M  R+ +SW +MI  + +
Sbjct: 419 KESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVL 478

Query: 429 HGDARNALIFFNKMK-----------------DESIDPNGVTFIGVLYACSHAGLVDEGR 471
            G   NAL+  ++M+                      PN +T + VL  C+    + +G+
Sbjct: 479 SGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGK 538

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
           EI A       +         +VD++ +   L  +  +   MP   NV+ W  L+ AC +
Sbjct: 539 EIHAYAIRNM-LASDITVGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMACGM 596

Query: 532 HGEIELA 538
           HG+ E A
Sbjct: 597 HGKGEEA 603



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 126/420 (30%), Positives = 197/420 (46%), Gaps = 52/420 (12%)

Query: 56  SFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRP---KHALKVFLKMLNEG 112
           S   PT +P +     S     P  PSR +  ++ A+    R    + A+  +++M   G
Sbjct: 33  SIQKPTASPLT-----SKTPPKPTSPSRSTASWVDALRSRTRSNDFREAISTYIEMTVSG 87

Query: 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPF-VQTGLVGMYGACGKILDA 171
              D F+FP +LKA++  + L  G Q+H    K G+GS    V   LV MYG CG I D 
Sbjct: 88  ARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDV 147

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
             +FD+++ RD V W+  I    +   +++ L  F  M+M N+E     L  +  ACS  
Sbjct: 148 CKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNL 207

Query: 232 G---NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
           G    L  G+ +H + +           + L+ MYA  G +D +K LF+  + +++V   
Sbjct: 208 GVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWN 266

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
            M+S +S++ +                                 EAL  F  M + G++ 
Sbjct: 267 TMISSFSQSDRF-------------------------------SEALAFFRLMVLEGVEL 295

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL----RVNNAIIDMYAKCGSLESA 404
           D VT+ SV+ AC+HL  LD  + IH Y+ +N    DL     V +A++DMY  C  +ES 
Sbjct: 296 DGVTIASVLPACSHLERLDVGKEIHAYVLRN---NDLIENSFVGSALVDMYCNCRQVESG 352

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSH 463
           R VF+ +  R +  W +MI+ +A +G    ALI F +M K   + PN  T   V+ AC H
Sbjct: 353 RRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVH 412



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 200/439 (45%), Gaps = 58/439 (13%)

Query: 16  STAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALS 72
           ++ + +CS L  +   K+ HA +L+  ++   +NS +   L+  +       S       
Sbjct: 301 ASVLPACSHLERLDVGKEIHAYVLR--NNDLIENSFVGSALVDMYCNCRQVES----GRR 354

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLN-EGLTIDRFSFPPILKAIARAE 131
           +F  I      + N  I   + +   + AL +F++M+   GL  +  +   ++ A    E
Sbjct: 355 VFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCE 414

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
                  +HG   KLGF  D +VQ  L+ MY   GK+  +  +FD M  RD V W+ MI 
Sbjct: 415 AFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMIT 474

Query: 192 GYFQNGLFDEVLNLFEEM-KMSNV----------------EPDEMVLSKILSACSRAGNL 234
           GY  +G +   L L  EM +M N                 +P+ + L  +L  C+    +
Sbjct: 475 GYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAI 534

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
           + G+ +H + I N +A D  + S L+ MYA CGC+++++ +F+++  KN++    ++   
Sbjct: 535 AKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMAC 594

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
              G+ E+A  +F  MV              AE     EA            KP++VT +
Sbjct: 595 GMHGKGEEALELFKNMV--------------AEAGRGGEA------------KPNEVTFI 628

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR 412
           +V +AC+H G++ +   +  Y  K+  G +   ++   ++D+  + G LE A E+   M 
Sbjct: 629 TVFAACSHSGLISEGLNL-FYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMP 687

Query: 413 RR--NVISWTSMINAFAIH 429
                V +W+S++ A  IH
Sbjct: 688 AEFDKVGAWSSLLGACRIH 706



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 171/396 (43%), Gaps = 78/396 (19%)

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           R    W   +    ++  F E ++ + EM +S   PD      +L A S   +L  GE +
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H        A+     S+ +T                        V+  +V+ Y + G +
Sbjct: 115 HA------AAVKFGYGSSSVT------------------------VANTLVNMYGKCGGI 144

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
            D   +FD++ ++D + W++ I+        ++AL+ F  MQ+  M+    T++SV  AC
Sbjct: 145 GDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALAC 204

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRV-------NNAIIDMYAKCGSLESAREVFERMRR 413
           ++LGV+       L + K   G  LRV       NNA++ MYAK G ++ ++ +FE    
Sbjct: 205 SNLGVMHG-----LRLGKQLHGYSLRVGDQKTFTNNALMAMYAKLGRVDDSKALFESFVD 259

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           R+++SW +MI++F+       AL FF  M  E ++ +GVT   VL ACSH   +D G+EI
Sbjct: 260 RDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEI 319

Query: 474 FASMTN-------------------------------EYNIPPKYEHYGCMVDLFGRANL 502
            A +                                 ++ +  + E +  M+  + R  L
Sbjct: 320 HAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGL 379

Query: 503 LREAL----ELVETMPFAPNVVIWGSLMAACRVHGE 534
             +AL    E+++     PN     S+M AC VH E
Sbjct: 380 DEKALILFIEMIKVAGLLPNTTTMASVMPAC-VHCE 414


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/605 (37%), Positives = 354/605 (58%), Gaps = 6/605 (0%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSF-SLPTTTPSSLYYALSIFSQI 77
           +  C S+  + Q HA +L      H   S    LLL S+ +L       L +A  +F  I
Sbjct: 18  LRQCRSIQRLNQLHAHLLV-----HGSLSAASDLLLASYCALAKAGHGVLCHARRLFDGI 72

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
           P P   + N  IRA   S  P+ AL++   ML  G+  + F+ P ++KA   A+     +
Sbjct: 73  PGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHAL 132

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
            VHG+  +LG     FV   L+  Y + G + D+R  FD+M  R++V W+ MI GY Q G
Sbjct: 133 AVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAG 192

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
              EV +LF EM+      DE  L  +L ACS+ GNL  G  VH  ++ +   +D  L+S
Sbjct: 193 DTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILES 252

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
            L+ MY  CG + MA+  F+ + +K++V  T+M+   ++ G V  AR  FD M E++++ 
Sbjct: 253 ALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVS 312

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W+AMIS Y +     EAL L+N+MQ  G+ PD++T+++V+SA   +G L   + +HLYI 
Sbjct: 313 WNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIR 372

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
            N +  D+ + N+++DMYAKCG +++A  +F  M  RNV+SW  +I   A+HG A + + 
Sbjct: 373 DNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTIT 432

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
           FF  M  +S  P+G+TF+ +L ACSH GL++ G+  F SM + YN+  + EHY CMVDL 
Sbjct: 433 FFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLL 492

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557
           GR   L +A+ L++ MP  P+VV+WG+L+ ACR+HG +++     KQLL+L+    G  V
Sbjct: 493 GRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQLLELEGISGGLFV 552

Query: 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYE 617
           L+SN+  +  +W+D+  LRK MKE G  K+   S IE+NN ++EF   D  H+++ +IY 
Sbjct: 553 LISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSIEINNSIHEFGVEDIRHERSSEIYA 612

Query: 618 KLNEV 622
            ++++
Sbjct: 613 VVDQL 617


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/655 (35%), Positives = 373/655 (56%), Gaps = 12/655 (1%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           +AL +F  +P       N  + A+S S R + AL + + M ++G+ +D  ++   L A A
Sbjct: 222 HALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACA 281

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           R   L  G Q+H    +     DP+V + LV +Y  CG   +A+ +F+ +  R+ V W+V
Sbjct: 282 RLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTV 341

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I G+ Q+G F E + LF +M+   +  D+  L+ ++S C    +L  G  +H   + + 
Sbjct: 342 LIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSG 401

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
                 + ++LI+MYA C  +  A+ +F  +  K++V  T+M++ +S+ G +  AR  FD
Sbjct: 402 QIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFD 461

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLD 367
            M  K++I W+AM+  Y ++   ++ L+++N M     ++PD VT +++   CA LG   
Sbjct: 462 GMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANK 521

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
              +I     K     D  V NA+I MY+KCG +  AR+VF+ +  ++++SW +MI  ++
Sbjct: 522 LGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYS 581

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            HG  + A+  F+ +      P+ ++++ VL  CSH+GLV EG+  F  M   +NI P  
Sbjct: 582 QHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGL 641

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
           EH+ CMVDL GRA  L EA +L++ MP  P   +WG+L++AC++HG  ELAE AAK + +
Sbjct: 642 EHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFE 701

Query: 548 LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
           LD    G+ +L++ IYA   +  D  ++RK M+++GI K    S +E+NN+V+ F   D 
Sbjct: 702 LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDV 761

Query: 608 SHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS 667
           SH Q   I +KL+E++ ++   GYV           D  + E+   HSEKLA+ +GL+S 
Sbjct: 762 SHPQVIAIRKKLDELMEKIARLGYVR---------TDSPRSEI--HHSEKLAVAFGLMSL 810

Query: 668 KKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
                I I+KNLR+C DCH  IKL+S V  RE VIRD  RFHH+  G CSC DYW
Sbjct: 811 PAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 227/496 (45%), Gaps = 82/496 (16%)

Query: 51  KLLLTSFSLPTTTPSS-----------LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPK 99
           +LLLT  + P     +           L  A+ +F ++PA      N  +     S +  
Sbjct: 60  RLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYL 119

Query: 100 HALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
            +L+ F+ M   G  + + F+F   +K+          +Q+ G+  K G   D  V   L
Sbjct: 120 ASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAAL 179

Query: 159 VGMYGACGKI-LDARL------------------------------MFDKMSYRDIVPWS 187
           V M+  CG + L +RL                              +FD M  RD+V W+
Sbjct: 180 VDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWN 239

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
           +M+    Q+G   E L++  +M+   V  D    +  L+AC+R  +L +G+ +H  +I N
Sbjct: 240 MMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRN 299

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
              +D ++ S L+ +YA CGC   AKG+F+ +  +N V  T +++G+ + G         
Sbjct: 300 LPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHG--------- 350

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
                    C++             E+++LFN+M+   M  D+  + ++IS C     L 
Sbjct: 351 ---------CFT-------------ESVELFNQMRAELMTLDQFALATLISGCCSRMDLC 388

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
             +++H    K+     + V+N++I MYAKC +L+SA  +F  M  ++++SWTSMI A +
Sbjct: 389 LGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHS 448

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
             G+   A  FF+ M  +++    +T+  +L A    G  ++G  ++  M +E ++ P +
Sbjct: 449 QVGNIAKAREFFDGMSTKNV----ITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDW 504

Query: 488 EHYGCMVDLF-GRANL 502
             Y   V LF G A+L
Sbjct: 505 VTY---VTLFKGCADL 517



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 195/433 (45%), Gaps = 35/433 (8%)

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM------------------------- 174
           HG    +G  S  F+Q  L+  Y +CG + DAR +                         
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGR 86

Query: 175 -------FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILS 226
                  F +M  RD+  W+ ++ GYFQ+  +   L  F  M  S +  P+    +  + 
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMK 146

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV 286
           +C   G  S    +   +       D+ + + L+ M+  CG +D+A  LF ++    +  
Sbjct: 147 SCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFC 206

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346
             +M+ GY +   V+ A  +FD M E+D++ W+ M+S  +++   +EAL +  +MQ  G+
Sbjct: 207 RNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE 406
           + D  T  S ++ACA L  L   +++H  + +N    D  V +A++++YAKCG  + A+ 
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKG 326

Query: 407 VFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL 466
           VF  +  RN ++WT +I  F  HG    ++  FN+M+ E +  +      ++  C     
Sbjct: 327 VFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 467 VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLM 526
           +  GR++ +       I         ++ ++ + + L+ A  +   M    ++V W S++
Sbjct: 387 LCLGRQLHSLCLKSGQIQAVVVS-NSLISMYAKCDNLQSAESIFRFMN-EKDIVSWTSMI 444

Query: 527 AACRVHGEIELAE 539
            A    G I  A 
Sbjct: 445 TAHSQVGNIAKAR 457



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 162/363 (44%), Gaps = 41/363 (11%)

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM-DMAKGLFDKVLLKN 283
           L +C   G L+   A+H  ++   +A    LQ+TL+  Y +CG + D  + L   +   N
Sbjct: 11  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPN 70

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           ++    M++GY + G++ DA  +F +M  +D+  W+ ++SGY ++     +L+ F  M  
Sbjct: 71  VITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHR 130

Query: 344 CG-MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS-- 400
            G   P+  T    + +C  LG    A ++   + K     D  V  A++DM+ +CG+  
Sbjct: 131 SGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVD 190

Query: 401 -----------------------------LESAREVFERMRRRNVISWTSMINAFAIHGD 431
                                        ++ A E+F+ M  R+V+SW  M++A +  G 
Sbjct: 191 LASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 250

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
            R AL     M+ + +  +  T+   L AC+    +  G+++ A +    N+P    +  
Sbjct: 251 VREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIR--NLPCIDPYVA 308

Query: 492 -CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG----EIELAEFAAKQLL 546
             +V+L+ +    +EA  +  ++    NV  W  L+A    HG     +EL      +L+
Sbjct: 309 SALVELYAKCGCFKEAKGVFNSLHDRNNVA-WTVLIAGFLQHGCFTESVELFNQMRAELM 367

Query: 547 QLD 549
            LD
Sbjct: 368 TLD 370


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/592 (39%), Positives = 347/592 (58%), Gaps = 35/592 (5%)

Query: 136 GMQVHGLGTKLG-FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
           G Q+H L  + G F SDPF  + L+ MY  C + +DAR  FD++   + V  + M  GY 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 195 QNGLFDEVLNLFEEMKMSN--VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           +N L    L LF ++  S      DE       SA +R  +     ++H  ++   +  D
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
           A + +T++  YA  G  D+                               AR +FD M E
Sbjct: 228 AGVVNTMLDAYAKGGRRDLGA-----------------------------ARKVFDTM-E 257

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEM-QVCG-MKPDKVTMLSVISACAHLGVLDQAQ 370
           KD++ W++MI+ YA+N    +AL L+ +M  V G +K + VT+ +++ ACAH G +   +
Sbjct: 258 KDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGK 317

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
            IH  + +     ++ V  +++DMY+KCG +E AR+ F++++ +N++SW++MI  + +HG
Sbjct: 318 CIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHG 377

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
             + AL  FN+M     +PN +TFI VL ACSHAGL+D+GR  + +M   + I P  EHY
Sbjct: 378 HGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHY 437

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
           GCMVDL GRA  L EA  L++ M   P+  IWG+L++ACR+H  +ELAE +AK+L +LD 
Sbjct: 438 GCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFELDA 497

Query: 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK 610
            + G  VLLSNIYA+   W+DV  +R  +K RGI K    S +E+    + F   D+SH 
Sbjct: 498 TNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHP 557

Query: 611 QTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD 670
           Q  +IY  L +++ +++ AGYVP+  S L DL++EEK   +  HSEKLA+ + L++S   
Sbjct: 558 QHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEEKASALHIHSEKLAIAFALMNSVPG 617

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S I ++KNLRVC DCH  IKL++K+  REI++RD  RFHH+KDG CSC DYW
Sbjct: 618 SVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFKDGSCSCGDYW 669


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/655 (35%), Positives = 371/655 (56%), Gaps = 12/655 (1%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           +AL IF  +P       N  I A+S S R + AL + + M  +G+  D  ++   L A A
Sbjct: 243 HALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACA 302

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           R   L  G Q+H    +     DP+V + +V +Y  CG   +A+ +F  +  R+ V W+V
Sbjct: 303 RLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTV 362

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I G+ Q G F E + LF +M+   +  D+  L+ ++S C    ++  G  +H   + + 
Sbjct: 363 LIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSG 422

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
                 + ++LI+MYA CG +  A+ +F+ +  +++V  T M++ YS+ G +  AR  FD
Sbjct: 423 HTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFD 482

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPDKVTMLSVISACAHLGVLD 367
            M  +++I W+AM+  Y ++   ++ LK++++M     + PD VT +++   CA +G   
Sbjct: 483 DMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANK 542

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
              +I  +  K     D  V NA+I MY+KCG +  AR+ F+ + R++++SW +MI  ++
Sbjct: 543 LGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYS 602

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            HG  + A+  F+ + ++   P+ ++++ VL  CSH+GLV+EG+  F  M  ++NI P  
Sbjct: 603 QHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGL 662

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
           EH+ CMVDL GRA  L EA  L++ MP  P   +WG+L++AC+ HG  +LAE AAK L  
Sbjct: 663 EHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFD 722

Query: 548 LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
           LD    G  +LL+ +YA   +  D  ++RK M+++GI K    S +E+NN V+ F   D 
Sbjct: 723 LDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDV 782

Query: 608 SHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS 667
           SH Q   I EKL+E++ ++   GYV            E  R  I  HSEKLA+ +G++S 
Sbjct: 783 SHPQVIAIREKLDELMEKIAHLGYV----------RTESPRSEI-HHSEKLAVAFGIMSL 831

Query: 668 KKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
                I I+KNLR+C+DCH  IKL+S V  RE VIRD  RFHH+K G CSC DYW
Sbjct: 832 PAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 165/315 (52%), Gaps = 3/315 (0%)

Query: 150 SDPFVQTGLVGM--YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207
           ++P V T  + M  Y   G + DA  +F +M  RD+  W+ ++ GY+Q+G F   L++F 
Sbjct: 88  TEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFV 147

Query: 208 EMKMSNVE-PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
            M+ +    P+      ++ +C   G       +   +   +   D  +Q+ L+ M   C
Sbjct: 148 SMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRC 207

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
           G MD A   F ++    ++   +M+ GY+++  V+ A  IF  M E+D++ W+ +IS  +
Sbjct: 208 GAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALS 267

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
           ++   +EAL +  +M   G++PD  T  S ++ACA L  L+  +++H+ + +N    D  
Sbjct: 268 KSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPY 327

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
           V +A++++YAKCG  + A+ VF  +R RN +SWT +I  F  +G    ++  FN+M+ E 
Sbjct: 328 VASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAEL 387

Query: 447 IDPNGVTFIGVLYAC 461
           +  +      ++  C
Sbjct: 388 MAVDQFALATLISGC 402



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 216/458 (47%), Gaps = 69/458 (15%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPIL 124
           SL  A+ +F ++P       N  +     S +  +AL +F+ M   G ++ + F+F  ++
Sbjct: 107 SLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVM 166

Query: 125 KAIARAEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI--------------- 168
           K+   A G  E  +Q+ GL +K     DP VQT LV M   CG +               
Sbjct: 167 KSCG-ALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTI 225

Query: 169 ---------------LDARL-MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS 212
                          +D  L +F  M  RD+V W+++I    ++G   E L++  +M   
Sbjct: 226 ICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGK 285

Query: 213 NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
            V PD    +  L+AC+R  +L +G+ +H  +I N   +D ++ S ++ +YA CGC   A
Sbjct: 286 GVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEA 345

Query: 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
           K +F  +  +N V  T ++ G+ + G                  C+S             
Sbjct: 346 KRVFSSLRDRNSVSWTVLIGGFLQYG------------------CFS------------- 374

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
           E+++LFN+M+   M  D+  + ++IS C +   +    ++H    K+     + V+N++I
Sbjct: 375 ESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLI 434

Query: 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
            MYAKCG+L++A  +F  M  R+++SWT MI A++  G+   A  FF+ M   ++    +
Sbjct: 435 SMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNV----I 490

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
           T+  +L A    G  ++G ++++ M  E ++ P +  Y
Sbjct: 491 TWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTY 528



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 165/368 (44%), Gaps = 43/368 (11%)

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF-DKV 279
           L+  L +C     L+    +H  +I+  +A    LQ+TL+  Y +CG +  A+ L  D++
Sbjct: 28  LADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEI 87

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
              N++    M++GY++ G + DA  +F +M  +D+  W+ ++SGY ++     AL +F 
Sbjct: 88  TEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFV 147

Query: 340 EMQVCGMK-PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            M+  G   P+  T   V+ +C  LG  + A ++   + K     D  V  A++DM  +C
Sbjct: 148 SMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRC 207

Query: 399 GSLESAR-------------------------------EVFERMRRRNVISWTSMINAFA 427
           G+++ A                                E+F+ M  R+V+SW  +I+A +
Sbjct: 208 GAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALS 267

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
             G  R AL     M  + + P+  T+   L AC+    ++ G+++   +       P  
Sbjct: 268 KSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNL---PHI 324

Query: 488 EHY--GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG----EIELAEFA 541
           + Y    MV+L+ +    +EA  +  ++    N V W  L+     +G     +EL    
Sbjct: 325 DPYVASAMVELYAKCGCFKEAKRVFSSLR-DRNSVSWTVLIGGFLQYGCFSESVELFNQM 383

Query: 542 AKQLLQLD 549
             +L+ +D
Sbjct: 384 RAELMAVD 391


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/625 (36%), Positives = 357/625 (57%), Gaps = 53/625 (8%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           +  L ++ +M+  G+ +D  +   +L   A++  L  G  VH L  K  F         L
Sbjct: 95  ERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTL 154

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + MY  CG +  A  +F+KM  R++V W+ MI GY ++G  D  + L ++M+   V+ D 
Sbjct: 155 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDV 214

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           + ++ IL AC+R+G+L  G+ VH++I  NN+A                            
Sbjct: 215 VAITSILHACARSGSLDNGKDVHDYIKANNMA---------------------------- 246

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
               NL V  A++  Y++ G +E A  +F  MV KD+I W+ M+                
Sbjct: 247 ---SNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE-------------- 289

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
                  +KPD  TM  ++ ACA L  L++ + IH YI +N +  D  V NA++D+Y KC
Sbjct: 290 -------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 342

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G L  AR +F+ +  ++++SWT MI  + +HG    A+  FN+M+D  I+P+ V+FI +L
Sbjct: 343 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 402

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
           YACSH+GL+++G   F  M N++NI PK EHY CMVDL  R   L +A + +ET+P AP+
Sbjct: 403 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPD 462

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
             IWG+L+  CR++ +IELAE  A+++ +L+P++ G  VLL+NIYA+ ++W++V  +R+ 
Sbjct: 463 ATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREK 522

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADR-SHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
           + ++G+ K   CS IE+   V  F++ +  SH  + +I   L ++  ++K  GY P    
Sbjct: 523 IGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKY 582

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
           AL++ ++ +K   +  HSEKLA+ +GL++      IR+ KNLRVC DCH   K +SK   
Sbjct: 583 ALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETR 642

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           REIV+RD  RFHH+KDG CSC+ +W
Sbjct: 643 REIVLRDSNRFHHFKDGYCSCRGFW 667



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 150/289 (51%), Gaps = 22/289 (7%)

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG-------------------- 298
           L++ YA CG +   + +FD +  KN+ +   MVS Y++ G                    
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
           + E A  +FD++ ++D+I W++MISGY  N   +  L ++ +M   G+  D  T++SV+ 
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
            CA  G L   + +H    K++F   +  +N ++DMY+KCG L+ A  VFE+M  RNV+S
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 181

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           WTSMI  +   G +  A+I   +M+ E +  + V    +L+AC+ +G +D G+++   + 
Sbjct: 182 WTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 241

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
              N+         ++D++ +   +  A  +  TM    +++ W +++ 
Sbjct: 242 AN-NMASNLFVCNALMDMYAKCGSMEGANSVFSTM-VVKDIISWNTMVG 288


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/682 (34%), Positives = 372/682 (54%), Gaps = 63/682 (9%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPILKAIARAE 131
           +F+ +P   +   N  I   S +  P  +++++  +L E  +   R +   ++   +   
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY----------- 180
               G  VH    +LGFG+  FV + LV MY   G I DAR +F +M             
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 181 --------------------RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
                               RD + W+ M+ G  QNGL  E L++F  M+   V  D+  
Sbjct: 221 GLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYT 280

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
              IL+AC     L  G+ +H +I                T Y +               
Sbjct: 281 FGSILTACGALAALEEGKQIHAYITR--------------TWYED--------------- 311

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
             N+ V +A+V  YS+   +  A  +F +M  +++I W+AMI GY +N   +EA++ F+E
Sbjct: 312 --NVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSE 369

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQ+ G+KPD  T+ SVIS+CA+L  L++  + H     +     + V+NA++ +Y KCGS
Sbjct: 370 MQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGS 429

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E A  +F+ M   + +SWT+++  +A  G A+  +  F KM    + P+GVTFIGVL A
Sbjct: 430 IEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSA 489

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CS AGLV++G + F SM  ++ I P  +HY CM+DL+ R+   +EA E ++ MP +P+  
Sbjct: 490 CSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAF 549

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
            W +L+++CR+ G +E+ ++AA+ LL+ DP +  + VLL +++A   +W +V  LR+ M+
Sbjct: 550 GWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMR 609

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           +R + KE  CS I+  N+V+ F   D+SH  + +IYEKL  + S++   GY PD+ S L 
Sbjct: 610 DRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLH 669

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D+ D +K  +I  HSEKLA+ +GLI   ++  IRIVKNLRVC DCHN  K +SK+  R+I
Sbjct: 670 DVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDI 729

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           ++RD  RFH + DG CSC D+W
Sbjct: 730 LVRDAVRFHKFSDGTCSCGDFW 751



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 166/374 (44%), Gaps = 52/374 (13%)

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNV-ALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           +LS       R G    G AVH  I+   + A    L + L+T YA  G +  A+ +FD+
Sbjct: 15  ILSSAAGDGGRTGVRVAG-AVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDE 73

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +   NL    A++S  + +  V D   +F  M E+D + ++A+I+G++    P  +++L+
Sbjct: 74  MPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLY 133

Query: 339 NE-MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
              ++   ++P ++T+ ++I   + L        +H  + +  FG    V + ++DMYAK
Sbjct: 134 RALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAK 193

Query: 398 CGSLESAREVFERMRRRNV-------------------------------ISWTSMINAF 426
            G +  AR VF+ M  + V                               I+WT+M+   
Sbjct: 194 MGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGL 253

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
             +G    AL  F +M+ E +  +  TF  +L AC     ++EG++I A +T  +     
Sbjct: 254 TQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTW----- 308

Query: 487 YEHY----GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA-----ACRVHGEIEL 537
           YE        +VD++ +   +R A  +   M    N++ W +++      AC    E  +
Sbjct: 309 YEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT-CRNIISWTAMIVGYGQNAC---SEEAV 364

Query: 538 AEFAAKQLLQLDPD 551
             F+  Q+  + PD
Sbjct: 365 RAFSEMQMDGIKPD 378


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/562 (40%), Positives = 339/562 (60%), Gaps = 7/562 (1%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           G +L A+ +F+ ++  +   W+ +I  Y  +   +     +++M  S+V  +      +L
Sbjct: 36  GDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLL 95

Query: 226 SACSRAGNLSYGEA--VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
            AC     L+ GEA  VH  +I      D    + L+ +YA CG +  A+ LFD +  ++
Sbjct: 96  RACRNL--LAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERD 153

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
            V    M+ GY ++G V+ A  +F  M  K+++ W+++ISG  E     EAL L  EMQ 
Sbjct: 154 AVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQN 213

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
            G + D V + S+++ACA+LG LDQ + +H Y+  N    D  +  A+++MY KCG +E 
Sbjct: 214 AGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEE 273

Query: 404 AREVFERMR--RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
           A  VF +++  +++V  WT+MI+ FAIHG    AL +FN+M+ E I PN +TF  VL AC
Sbjct: 274 ALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRAC 333

Query: 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI 521
           S+ GLV+EG+E+F SM   YN+ P  EHYGCMVDL GR+  L EA EL++ MP  P+ VI
Sbjct: 334 SYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVI 393

Query: 522 WGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581
           WG+L+ AC +H +  L       L+++D DH G  + L+ I A + +W++  E+R  MK 
Sbjct: 394 WGALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKS 453

Query: 582 RGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP-AGYVPDIHSALV 640
            G+      S + +N  V+EFL   + H Q +QI  KL ++   L+   GY P     L+
Sbjct: 454 LGVPISPGKSSVTLNGIVHEFLAGHQDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLL 513

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           DLE+EEK   +  HSEKLA+ +GLI++K  + IR++KNLR+C DCH   KLVS++Y+REI
Sbjct: 514 DLENEEKETAMAQHSEKLAIAFGLINTKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREI 573

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           ++RDR RFHH++DG CSCKDYW
Sbjct: 574 IMRDRVRFHHFRDGSCSCKDYW 595



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 216/449 (48%), Gaps = 85/449 (18%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP--SSLYYALSIFSQIPAPPS 82
           +  +KQ  AQ++K +     +       L T F    T+P    L YA  +F+ I +P +
Sbjct: 1   MKQLKQIQAQMIKTAIITEPK-------LATKFLTLCTSPHVGDLLYAQRVFNGITSPNT 53

Query: 83  RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGL 142
            + N  IRA S S  P+ A   + +ML+  +  + ++FP +L+A      + E +QVHGL
Sbjct: 54  FMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGL 113

Query: 143 GTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG----- 197
             KLGFGSD F    L+ +Y  CG+I  AR +FD +  RD V W++MIDGY ++G     
Sbjct: 114 VIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTA 173

Query: 198 ---LFD-----------------------EVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
                D                       E L+L  EM+ +  E D + ++ +L+AC+  
Sbjct: 174 YGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANL 233

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL--LKNLVVSTA 289
           G L  G  +H ++++N V +D  +   L+ MY  CG M+ A  +F K+    K++ + TA
Sbjct: 234 GALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTA 293

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
           M+ G++  G+                                 EAL+ FN M+  G++P+
Sbjct: 294 MIDGFAIHGR-------------------------------GVEALEWFNRMRREGIRPN 322

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI------IDMYAKCGSLES 403
            +T  +V+ AC++ G++++ +   L+     F     VN +I      +D+  + G L+ 
Sbjct: 323 SITFTAVLRACSYGGLVEEGKE--LFKSMKCF---YNVNPSIEHYGCMVDLLGRSGRLDE 377

Query: 404 AREVFERM-RRRNVISWTSMINAFAIHGD 431
           A+E+ ++M  + + + W +++ A  IH D
Sbjct: 378 AKELIKKMPMKPSAVIWGALLKACWIHRD 406


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/653 (34%), Positives = 360/653 (55%), Gaps = 32/653 (4%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           AL +F ++P       N  I   + +     A+++F++M  EG  +D  +   ++ A  +
Sbjct: 38  ALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQ 97

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           +     G  VHG   + G  S+  +   L+ MY  C        +F  M  +++V W+ M
Sbjct: 98  SHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAM 157

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I  Y + G FD+V  LF+EM +  + PD   ++  L A +   +L +G++VH + I N +
Sbjct: 158 ITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGI 217

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                + + L+ MY  CG M                               E+AR IFD 
Sbjct: 218 EEVLPVANALMEMYVKCGYM-------------------------------EEARFIFDH 246

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           + +KD I W+ +I GY+ +N   EA  LFNEM +  ++P+ VTM  ++ A A L  L++ 
Sbjct: 247 VTKKDTISWNTLIGGYSRSNLANEAFTLFNEM-LLQLRPNAVTMACILPAAASLSSLERG 305

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + +H Y  +  +  D  V NA++DMY KCG+L  AR +F+ +  +N+ISWT MI  + +H
Sbjct: 306 REMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMH 365

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G  R+A+  F +MK   I P+  +F  +LYACSH+GL DEG   F +M NE+ I PK +H
Sbjct: 366 GRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKH 425

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           Y CMVDL      L+EA E +ETMP  P+  IW SL+  CR+H  ++LAE  A+ + +L+
Sbjct: 426 YACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELE 485

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P++ G  VLL+NIYA+ +RW+ V +L+  +  RG+ +   CS IE+  + + F   +R+H
Sbjct: 486 PENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENRNH 545

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
            Q  +I E L++V   ++  G+ P    AL+  +D    E +  HS KLA+ +G+++  +
Sbjct: 546 PQGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLSQ 605

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              IR+ KN RVC  CH   K +SK+  REI++RD  RFHH+++G CSC+ YW
Sbjct: 606 GRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEEGRCSCRGYW 658


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/485 (45%), Positives = 311/485 (64%), Gaps = 7/485 (1%)

Query: 245 IDNNVALDAHLQ-------STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
           +D +VAL    Q       + +I  +A  G +  A+ LFD +  K+LV  TAM++ Y++ 
Sbjct: 78  LDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKH 137

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           G+++ AR++FD M E+D +CW+ MI GY +N  P EAL LF  M     KP++VT+LSV+
Sbjct: 138 GELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVL 197

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
           SAC  LG L+  + +H YI+ N    ++ V  A++DMY+KCGSLE AR VF+++  ++V+
Sbjct: 198 SACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVV 257

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
           +W SMI  +A+HG ++ AL  F  M    + P  +TFIG+L AC H+G V EG +IF  M
Sbjct: 258 AWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKM 317

Query: 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537
            +EY I PK EHYGCMV+L GRA  + +A ELV+ M   P+ V+WG+L+ ACR+HG+I L
Sbjct: 318 KDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIAL 377

Query: 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNN 597
            E   + L+  +  + G  +LLSNIYA    W  V  LR  MK+ G+ KE  CS IE+NN
Sbjct: 378 GEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNN 437

Query: 598 EVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEK 657
           +V+EFL    +H +  +IY  L E+   LK  GY P     L D+ + EK   +  HSEK
Sbjct: 438 KVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEK 497

Query: 658 LALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCS 717
           LA+ +GLI+++  + I+IVKNLRVC DCH   KL+SK+  R+IV+RDR RFHH+ +G CS
Sbjct: 498 LAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCS 557

Query: 718 CKDYW 722
           C DYW
Sbjct: 558 CGDYW 562



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 145/278 (52%), Gaps = 35/278 (12%)

Query: 156 TGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
           T ++  Y   G++  AR++FD M  RD V W+VMIDGY QNG+ +E L LF  M  +  +
Sbjct: 128 TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAK 187

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           P+E+ +  +LSAC + G L  G  VH +I +N +  + H+ + L+ MY+ CG ++ A+ +
Sbjct: 188 PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLV 247

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           FDK+  K++V   +M+ GY+  G                                 QEAL
Sbjct: 248 FDKIDDKDVVAWNSMIVGYAMHG-------------------------------FSQEAL 276

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIID 393
           +LF  M   G+ P  +T + ++SAC H G + +   I   + K+ +G + ++ +   +++
Sbjct: 277 QLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKM-KDEYGIEPKIEHYGCMVN 335

Query: 394 MYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHG 430
           +  + G +E A E+ + M    + + W +++ A  +HG
Sbjct: 336 LLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHG 373



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 100/239 (41%), Gaps = 31/239 (12%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I   + +  P  AL +F +ML      +  +   +L A  +   L  G  VH     
Sbjct: 159 NVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIEN 218

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
            G   +  V T LV MY  CG + DARL+FDK+  +D+V W+ MI GY  +G   E L L
Sbjct: 219 NGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQL 278

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           F+ M    + P  +    ILSAC  +G ++ G  +       N   D +     I  Y  
Sbjct: 279 FKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIF------NKMKDEYGIEPKIEHY-- 330

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA-RLIFDQMVEKDLICWSAMIS 323
            GC                     MV+   RAG VE A  L+ +  +E D + W  ++ 
Sbjct: 331 -GC---------------------MVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLG 367



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 12/145 (8%)

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           YA  G L+ +  +F R +  +V  WT++I+  A+ GD  +A   F+ M ++S+    V+ 
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSL----VSL 127

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
             +L   +  G +D  R +F  M     +      +  M+D + +  +  EAL L   M 
Sbjct: 128 TAMLTCYAKHGELDAARVLFDGMEERDGVC-----WNVMIDGYTQNGMPNEALVLFRRML 182

Query: 515 FA---PNVVIWGSLMAACRVHGEIE 536
            A   PN V   S+++AC   G +E
Sbjct: 183 KAKAKPNEVTVLSVLSACGQLGALE 207



 Score = 46.2 bits (108), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 101/268 (37%), Gaps = 40/268 (14%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLL-TSFSLPTT 62
           L    KP  +   + +S+C  L  ++       +  HS+   N +   + + T+     +
Sbjct: 182 LKAKAKPNEVTVLSVLSACGQLGALESG-----RWVHSYIENNGIQFNVHVGTALVDMYS 236

Query: 63  TPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
              SL  A  +F +I        N  I   +     + AL++F  M   GL     +F  
Sbjct: 237 KCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIG 296

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           IL A   +  + EG  +     K  +G +P ++      YG    +L             
Sbjct: 297 ILSACGHSGWVTEGWDIFN-KMKDEYGIEPKIE-----HYGCMVNLL------------- 337

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
                         G    V   +E +K  N+EPD ++   +L AC   G ++ GE + E
Sbjct: 338 --------------GRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVE 383

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMD 270
            ++D N+A ++     L  +YA  G  D
Sbjct: 384 LLVDQNLA-NSGTYILLSNIYAAVGNWD 410


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/640 (34%), Positives = 363/640 (56%), Gaps = 33/640 (5%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  +  +  + R   A+ +F +M+ EG+  D  +   +L            + +H    K
Sbjct: 139 NAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVK 198

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
            G   + FV   ++ +YG  G + + R +FD MS RD+V W+ +I G+ Q G     + +
Sbjct: 199 HGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEM 258

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           F  M+ S V PD + L  + SA ++ G++  G +VH +++                    
Sbjct: 259 FCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRG----------------- 301

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
                     +D   + +++   A+V  Y++  ++E A+ +FD M  +D + W+ +I+GY
Sbjct: 302 ----------WD---VGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGY 348

Query: 326 AENNHPQEALKLFNEMQVC-GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
            +N    EA+ +++ MQ   G+KP + T +SV+ A +HLG L Q  R+H    K     D
Sbjct: 349 MQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLD 408

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
           + V   +ID+YAKCG L+ A  +FE+  RR+   W ++I+   +HG    AL  F++M+ 
Sbjct: 409 VYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQ 468

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
           E I P+ VTF+ +L ACSHAGLVD+GR  F  M   Y I P  +HY CMVD+FGRA  L 
Sbjct: 469 EGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLD 528

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
           +A + +  MP  P+  IWG+L+ ACR+HG +E+ + A++ L +LDP + G  VL+SN+YA
Sbjct: 529 DAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYA 588

Query: 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS--HKQTDQIYEKLNEV 622
           K  +W  V E+R  ++ + + K    S IE+   V  F + ++   H Q ++I  +L ++
Sbjct: 589 KVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDL 648

Query: 623 ISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVC 682
           +++++  GYVPD    L D+E++EK +++  HSE+LA+ +G+I++   + + I KNLRVC
Sbjct: 649 LAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPRTPLHIYKNLRVC 708

Query: 683 EDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            DCHN  K +SK+  REI++RD  RFHH+KDG CSC D+W
Sbjct: 709 GDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 128/250 (51%), Gaps = 1/250 (0%)

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +L  +   S A+V  Y R G+V DA   FD+M  +D+  W+AM+SG   N    EA+ LF
Sbjct: 99  LLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLF 158

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
             M + G+  D VT+ SV+  C  LG    A  +HLY  K+    +L V NA+ID+Y K 
Sbjct: 159 GRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKL 218

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G LE  R+VF+ M  R++++W S+I+     G   +A+  F  M+D  + P+ +T + + 
Sbjct: 219 GMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLA 278

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            A +  G +  GR +   M               +VD++ + + +  A  + ++MP   +
Sbjct: 279 SAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVR-D 337

Query: 519 VVIWGSLMAA 528
            V W +L+  
Sbjct: 338 AVSWNTLITG 347



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 149/365 (40%), Gaps = 75/365 (20%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML-NEGLTIDRFSFPPI 123
           S +  A  +F  +P   +   N  I     +     A+ V+  M  +EGL   + +F  +
Sbjct: 321 SKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSV 380

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L A +    L +G ++H L  K G   D +V T ++ +Y  CGK+ +A L+F++   R  
Sbjct: 381 LPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRST 440

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
            PW+ +I G   +G   + L+LF +M+   + PD +    +L+ACS AG +  G      
Sbjct: 441 GPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNM 500

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
                                    M  A G+  K + K+      MV  + RAGQ++DA
Sbjct: 501 -------------------------MQTAYGI--KPIAKHY---ACMVDMFGRAGQLDDA 530

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
              FD +                  N P              +KPD     +++ AC   
Sbjct: 531 ---FDFI-----------------RNMP--------------IKPDSAIWGALLGACRIH 556

Query: 364 GVLDQ---AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV---I 417
           G ++    A +    +D    G  + ++N    MYAK G  +   EV   +RR+N+    
Sbjct: 557 GNVEMGKVASQNLFELDPKNVGYYVLMSN----MYAKVGKWDGVDEVRSLVRRQNLQKTP 612

Query: 418 SWTSM 422
            W+S+
Sbjct: 613 GWSSI 617


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/600 (39%), Positives = 345/600 (57%), Gaps = 50/600 (8%)

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           ++ I  A GL + M V           D   +T ++  Y   G++ +AR +FD+M  R++
Sbjct: 153 VRRIDEARGLFDIMPV----------KDVVARTNMISGYCQEGRLAEARELFDEMPRRNV 202

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           + W+ MI GY QNG  D    LFE M      P++                         
Sbjct: 203 ISWTTMISGYVQNGQVDVARKLFEVM------PEK------------------------- 231

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
              N V+  A L       Y   G ++ A  LFD + +K +V   AM+ G+ + G+V  A
Sbjct: 232 ---NEVSWTAMLMG-----YTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKA 283

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
           R +FDQ+ EKD   WSAMI  Y       EAL LF  MQ  G++ +  +++SV+S CA L
Sbjct: 284 RQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASL 343

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
             LD  +++H  + K+ F  D+ V + +I MY KCG L  AR++F+R   ++++ W S+I
Sbjct: 344 ASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSII 403

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
             +A HG    AL  F++M    +  +GVTF+GVL ACS+ G V EG EIF SM ++Y +
Sbjct: 404 TGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLV 463

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
            PK EHY CMVDL GRA L+ +A++L++ MP   + +IWG+L+ ACR H  + LAE AAK
Sbjct: 464 EPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAK 523

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
           +LLQL+P + G  +LLSNIYA   RW DV ELR++M+ + + K   CS IE+   V+ F 
Sbjct: 524 KLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFT 583

Query: 604 TA-DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
                 H +   I + L ++   L+ AGY PD    L D+++EEK   +  HSE+LA+ +
Sbjct: 584 GGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLAVAF 643

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           GL+   +   IR++KNLRVC DCH+ IKL++K+  REI++RD  RFHH+KDG CSC+DYW
Sbjct: 644 GLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 196/408 (48%), Gaps = 43/408 (10%)

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM--------- 209
           +  Y   G+I  AR +FD+M  + IV W+ M+ GYFQN    E   LF++M         
Sbjct: 23  IARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSWN 82

Query: 210 ----------------KMSNVEPDEMVLS--KILSACSRAGNLSYGEAVHEFIIDNNVAL 251
                           K  +  P+  V+S   ++    + G +S  E +   + + NV  
Sbjct: 83  GLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVS 142

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
              +   LI +      +D A+GLFD + +K++V  T M+SGY + G++ +AR +FD+M 
Sbjct: 143 WTVMLGGLIQVRR----IDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMP 198

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
            +++I W+ MISGY +N     A KLF  M     + ++V+  +++      G +++A  
Sbjct: 199 RRNVISWTTMISGYVQNGQVDVARKLFEVMP----EKNEVSWTAMLMGYTQGGRIEEASE 254

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           +   +   A    +   NA+I  + + G +  AR+VF+++R ++  +W++MI  +   G 
Sbjct: 255 LFDAMPVKA----VVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGF 310

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
              AL  F  M+ E +  N  + I VL  C+    +D GR++ A +              
Sbjct: 311 EVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKS-QFDSDVFVAS 369

Query: 492 CMVDLFGRANLLREALELVETMPFAP-NVVIWGSLMAACRVHGEIELA 538
            ++ ++ +   L +A ++ +   F+P ++V+W S++     HG +E A
Sbjct: 370 VLITMYVKCGDLVKARQIFDR--FSPKDIVMWNSIITGYAQHGLVEEA 415



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 160/348 (45%), Gaps = 85/348 (24%)

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
           +   + ++ Y+R GQ+E AR +FD+M +K ++ W++M++GY +NN P+EA  LF++M   
Sbjct: 17  IAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM--- 73

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
              P++ T+                                   N +I  Y K   +  A
Sbjct: 74  ---PERNTVSW---------------------------------NGLISGYVKNRMVSEA 97

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
           R+ F+ M  RNV+SWT+M+  +   G    A   F +M ++++    V++  +L      
Sbjct: 98  RKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNV----VSWTVMLGGLIQV 153

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL---------LREALELVETMPF 515
             +DE R +F  M      P K        D+  R N+         L EA EL + MP 
Sbjct: 154 RRIDEARGLFDIM------PVK--------DVVARTNMISGYCQEGRLAEARELFDEMP- 198

Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD-HDGALVLLSNIYAKDKRWQDVGE 574
             NV+ W ++++    +G++++    A++L ++ P+ ++ +   +   Y +  R ++  E
Sbjct: 199 RRNVISWTTMISGYVQNGQVDV----ARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASE 254

Query: 575 LRKSMKERGILKERACSRIEM----NNEVYEFLTADRSHKQTDQIYEK 618
           L  +M  + ++   AC+ + +    N EV       ++ +  DQI EK
Sbjct: 255 LFDAMPVKAVV---ACNAMILGFGQNGEV------AKARQVFDQIREK 293



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 108/256 (42%), Gaps = 31/256 (12%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F QI        +  I+          AL +F  M  EG+  +  S   +L   A 
Sbjct: 283 ARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCAS 342

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G QVH    K  F SD FV + L+ MY  CG ++ AR +FD+ S +DIV W+ +
Sbjct: 343 LASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSI 402

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY Q+GL +E L +F EM  S +  D +    +LSACS  G +  G  + E +     
Sbjct: 403 ITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSK-- 460

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
               +L       YA                         MV    RAG V DA  +  +
Sbjct: 461 ----YLVEPKTEHYA------------------------CMVDLLGRAGLVNDAMDLIQK 492

Query: 310 M-VEKDLICWSAMISG 324
           M VE D I W A++  
Sbjct: 493 MPVEADAIIWGALLGA 508



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 94/238 (39%), Gaps = 50/238 (21%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           Q   P  +   +  +S +SL H +Q HA+++K   S    +  +  +L+T +        
Sbjct: 327 QSNFPSLISVLSVCASLASLDHGRQVHAELVK---SQFDSDVFVASVLITMY----VKCG 379

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
            L  A  IF +       + N  I   +     + AL+VF +M + G+  D  +F  +L 
Sbjct: 380 DLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLS 439

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A +    + EG+++                                   F+ M  + +V 
Sbjct: 440 ACSYTGKVKEGLEI-----------------------------------FESMKSKYLVE 464

Query: 186 -----WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
                ++ M+D   + GL ++ ++L ++M    VE D ++   +L AC    N++  E
Sbjct: 465 PKTEHYACMVDLLGRAGLVNDAMDLIQKMP---VEADAIIWGALLGACRTHMNMNLAE 519


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/613 (38%), Positives = 348/613 (56%), Gaps = 41/613 (6%)

Query: 119 SFPPILKAIARAEGLLEGMQVHG-LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
           ++  +L A ARA        VH  L     F SDPF+ T L+  Y A   +  AR +FD+
Sbjct: 250 TYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAARQVFDE 309

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC--SRAGNLS 235
              ++I  W+ M+         +E L    +M    V  D    +  L AC  + A +L 
Sbjct: 310 APVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASASHLP 369

Query: 236 YGEAV---HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
               V   H   I     L  H+ +TLI  YA                            
Sbjct: 370 ASARVREMHAHAIRRGYGLHTHVATTLIDCYA---------------------------- 401

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV--CGMKPDK 350
              + G V  A  +F  M +++L+ WSAMI  YA+N  P +A+++F EM      + P+ 
Sbjct: 402 ---KLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNS 458

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           +T++SV+ ACA +  L Q + +H YI +  F   + V NA++ MY KCG LE+ R +F  
Sbjct: 459 ITIVSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNW 518

Query: 411 M-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
           + RRRNV+SW S+I+ + +HG  R +L  F +M +E I PN +TF+ VL ACSH GLV++
Sbjct: 519 IGRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQ 578

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G+++F SM  EYN+ P+ EHY CMVDL GRA  L EA+EL+++M   P+  +WGSL+ AC
Sbjct: 579 GKKLFESMV-EYNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGAC 637

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
           R+HG +E AE A   L  L+P + G  VLL++IYA+ K    V  L++ ++E  + K   
Sbjct: 638 RIHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPG 697

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
           CS IE+  ++Y F++ D  + Q +++   + E ++++K  GYVPD  S L D+E+EEK  
Sbjct: 698 CSWIEVKKKLYSFVSVDNKNPQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEEEEKER 757

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
           ++L HSEKLA+ +GLI +     IRI KNLR+CEDCH+  K +SK   REIV+RD  RFH
Sbjct: 758 ILLGHSEKLAVAFGLIKTGSGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVRDVNRFH 817

Query: 710 HYKDGVCSCKDYW 722
           H+++GVCSC+DYW
Sbjct: 818 HFRNGVCSCRDYW 830



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 187/406 (46%), Gaps = 41/406 (10%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
           S+L  A  +F + P     V N  ++A++ +   + AL     M   G+ +D +S+   L
Sbjct: 298 SALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGL 357

Query: 125 KAI--ARAEGLLEGMQV---HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           KA   A A  L    +V   H    + G+G    V T L+  Y   G +  A  +F  M 
Sbjct: 358 KACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMP 417

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE--PDEMVLSKILSACSRAGNLSYG 237
            R++V WS MI  Y +N    + + +F+EM  S+ +  P+ + +  +L AC+    L  G
Sbjct: 418 DRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQG 477

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS-TAMVSGYSR 296
           + +H +I+     L   + + L+ MY  CGC++  + +F+ +  +  VVS  +++SGY  
Sbjct: 478 KVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGM 537

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
            G   ++  +F++M+E+                               G+ P+ +T +SV
Sbjct: 538 HGFGRESLQVFEEMIEE-------------------------------GISPNIITFVSV 566

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRN 415
           + AC+H+G+++Q +++   + +            ++D+  + G L+ A E+ + MR + +
Sbjct: 567 LGACSHVGLVEQGKKLFESMVEYNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPS 626

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYA 460
              W S++ A  IHG    A +  + + D E  +      +  +YA
Sbjct: 627 PQVWGSLLGACRIHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYA 672


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/527 (40%), Positives = 345/527 (65%), Gaps = 7/527 (1%)

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           ++++  M+   V PD      +L +     +L  G+  H  I+   +  D  ++++L+ M
Sbjct: 46  ISVYFRMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNM 105

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           Y++CG +  A  +FD+ + K+L    ++V+ Y++AG +  AR +FD+M E+++I WS +I
Sbjct: 106 YSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLI 165

Query: 323 SGYAENNHPQEALKLFNEMQV-----CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           +GY      +EAL LF EMQ+       + P+K TM +V+SAC  LG L+Q + +H YID
Sbjct: 166 NGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYID 225

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNAL 436
           K     D+ +  A+IDMYAKCGSLE A+ VF+ +  +++V ++++MI   A++G      
Sbjct: 226 KYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECF 285

Query: 437 IFFNKMK-DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
             F++M    +I+PN VTF+G+L AC H GL+++G+  F  MT E+ I P  +HYGCMVD
Sbjct: 286 QVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVD 345

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555
           L+GR+ L++EA   + +MP  P+V+IWGSL++  R+ G+I+  E A K+L++LDP + GA
Sbjct: 346 LYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGA 405

Query: 556 LVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQI 615
            VLLSN+YAK  RW +V  +R  M+ +GI K   CS +E+   V+EF+  D S +++++I
Sbjct: 406 YVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESERI 465

Query: 616 YEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRI 675
           Y  L E++  L+ AGYV D    L+DLE+++K   + +HSEKLA+ + L+ ++  + +RI
Sbjct: 466 YAMLEEIMQRLREAGYVSDTKEVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRPGTPVRI 525

Query: 676 VKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +KNLR+C DCH  +K++SK+++REIV+RD  RFHH+ DG CSC+D+W
Sbjct: 526 IKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFSDGSCSCRDFW 572



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 179/395 (45%), Gaps = 72/395 (18%)

Query: 82  SRVSNKFIRAISWSHRP--KHA-LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
           S V N  IRAI  +  P  +H+ + V+ +M +  ++ D  +FP +L +      L  G +
Sbjct: 23  SFVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQR 82

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACG------KILD---------------------- 170
            H      G   DPFV+T L+ MY +CG      +I D                      
Sbjct: 83  THAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGL 142

Query: 171 ---ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-----VEPDEMVLS 222
              AR +FD+M  R+++ WS +I+GY   G + E L+LF EM++       V P++  +S
Sbjct: 143 INHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMS 202

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            +LSAC R G L  G+ VH +I    V +D  L + LI MYA CG ++ AK +FD +  K
Sbjct: 203 TVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSK 262

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
                                         KD+  +SAMI   A      E  ++F+EM 
Sbjct: 263 ------------------------------KDVKAYSAMICCLAMYGLTDECFQVFSEMT 292

Query: 343 VC-GMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
               + P+ VT + ++ AC H G++++ +    +  ++      ++    ++D+Y + G 
Sbjct: 293 TSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGL 352

Query: 401 LESAREVFERM-RRRNVISWTSMINAFAIHGDARN 434
           ++ A      M    +V+ W S+++   + GD + 
Sbjct: 353 IKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKT 387


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/615 (37%), Positives = 350/615 (56%), Gaps = 42/615 (6%)

Query: 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR 172
           + +DR  +  +LK     + L +G  VHG   +  F  D  +   L+ MY  CG + +AR
Sbjct: 47  IPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEAR 106

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
            +FDKM  RD V W+ +I GY Q+    + L LF +M      P+E  LS ++ A +   
Sbjct: 107 KVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAER 166

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
               G  +H F +                    CG        FD     N+ V +A++ 
Sbjct: 167 RGCCGHQLHGFCV-------------------KCG--------FDS----NVHVGSALLD 195

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
            Y+R G ++DA+L+FD +  ++ + W+A+I+G+A     ++AL+LF  M   G +P   +
Sbjct: 196 LYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFS 255

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKN-----AFGGDLRVNNAIIDMYAKCGSLESAREV 407
             S+  AC+  G L+Q + +H Y+ K+     AF G     N ++DMYAK GS+  AR++
Sbjct: 256 YASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAG-----NTLLDMYAKSGSIHDARKI 310

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F+R+ +R+V+SW S++ A+A HG    A+ +F +M+   I PN ++F+ VL ACSH+GL+
Sbjct: 311 FDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLL 370

Query: 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
           DEG   +  M  +  I  +  HY  +VDL GRA  L  AL  +E MP  P   IW +L+ 
Sbjct: 371 DEGWHYYELMKKD-GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLN 429

Query: 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587
           ACR+H   EL  +AA+ + +LDPD  G  V+L NIYA   RW D   +RK MKE G+ KE
Sbjct: 430 ACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKE 489

Query: 588 RACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEK 647
            ACS +E+ N ++ F+  D  H Q ++I  K  EV++++K  GYVPD    +V ++ +E+
Sbjct: 490 PACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQER 549

Query: 648 REVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTR 707
              + +HSEK+AL + L+++   S I I KN+RVC DCH+ IKL SK   REI++RD  R
Sbjct: 550 EVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTNR 609

Query: 708 FHHYKDGVCSCKDYW 722
           FHH+KDG CSCKDYW
Sbjct: 610 FHHFKDGACSCKDYW 624



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 173/366 (47%), Gaps = 32/366 (8%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
            SL  A  +F ++P          I   S   RP  AL +F +ML  G + + F+   ++
Sbjct: 100 GSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVI 159

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           KA A       G Q+HG   K GF S+  V + L+ +Y   G + DA+L+FD +  R+ V
Sbjct: 160 KAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV 219

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ +I G+ +    ++ L LF+ M      P     + +  ACS  G L  G+ VH ++
Sbjct: 220 SWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYM 279

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           I +   L A   +TL+ MYA  G +  A+ +FD++  +++V   ++++ Y++ G   +A 
Sbjct: 280 IKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEA- 338

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                      +CW                   F EM+  G++P++++ LSV++AC+H G
Sbjct: 339 -----------VCW-------------------FEEMRRGGIRPNEISFLSVLTACSHSG 368

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMI 423
           +LD+    +  + K+    +      I+D+  + G L  A    E M      + W +++
Sbjct: 369 LLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 428

Query: 424 NAFAIH 429
           NA  +H
Sbjct: 429 NACRMH 434



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 154/326 (47%), Gaps = 33/326 (10%)

Query: 208 EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           +++ S +  D    + +L  C+    L+ G  VH  +I +    D  + +TL+ MYA CG
Sbjct: 41  DLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCG 100

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
            ++ A+ +FDK+  ++ V  T ++SGYS+                               
Sbjct: 101 SLEEARKVFDKMPERDFVTWTTLISGYSQ------------------------------- 129

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
           ++ P +AL LFN+M   G  P++ T+ SVI A A         ++H +  K  F  ++ V
Sbjct: 130 HDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHV 189

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
            +A++D+Y + G ++ A+ VF+ +  RN +SW ++I   A       AL  F  M  E  
Sbjct: 190 GSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGF 249

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            P+  ++  +  ACS  G +++G+ + A M         +     ++D++ ++  + +A 
Sbjct: 250 RPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAG-NTLLDMYAKSGSIHDAR 308

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHG 533
           ++ + +    +VV W SL+ A   HG
Sbjct: 309 KIFDRLA-KRDVVSWNSLLTAYAQHG 333



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 120/254 (47%), Gaps = 44/254 (17%)

Query: 333 EALKL-FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           E+LK   N+++   +  D+    +++  C    +L Q + +H ++ ++ F  DL +NN +
Sbjct: 33  ESLKFPSNDLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTL 92

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           ++MYAKCGSLE AR+VF++M  R+ ++WT++I+ ++ H    +AL+ FN+M      PN 
Sbjct: 93  LNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNE 152

Query: 452 VTFIGVLYA--------CSHA---------------------------GLVDEGREIFAS 476
            T   V+ A        C H                            GL+D+ + +F +
Sbjct: 153 FTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDA 212

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM---PFAPNVVIWGSLMAACRVHG 533
           + +  ++      +  ++    R     +ALEL + M    F P+   + SL  AC   G
Sbjct: 213 LESRNDVS-----WNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTG 267

Query: 534 EIELAEFAAKQLLQ 547
            +E  ++    +++
Sbjct: 268 FLEQGKWVHAYMIK 281


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/625 (37%), Positives = 357/625 (57%), Gaps = 35/625 (5%)

Query: 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
            AL ++ +ML  G   + F+FP  LK+ A     + G Q HG  TK+G   +PFVQTGL+
Sbjct: 32  QALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLI 91

Query: 160 GMYGACGKILDARLMFDK--MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
            MY     + +AR +F++   S +  V ++ ++ GY  N    E + LF +M    V  +
Sbjct: 92  SMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVN 151

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
            + L  ++ AC    NL  G ++H   +      D  + +  ITMY  CG ++ A+ L  
Sbjct: 152 SVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKL-- 209

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                                        FD+M  K LI W+AM+SGYA+N      L+L
Sbjct: 210 -----------------------------FDEMPVKGLISWNAMVSGYAQNGLATNVLEL 240

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           +  M + G+ PD VT++ V+S+CA+LG       +   I  + F  +  +NNA+I+MYA+
Sbjct: 241 YRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYAR 300

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CG+L  A+ VF+ M  R ++SWT++I  + +HG    A+  F +M    I+P+G  F+ V
Sbjct: 301 CGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCV 360

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L ACSHAGL D+G E F  M   Y + P  EHY CMVDL GRA  L+EA  L+E+MP  P
Sbjct: 361 LSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKP 420

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
           +  +WG+L+ AC++H  +ELAE A +++++L+P++ G  VLLSNIY+     + V  +R 
Sbjct: 421 DGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRI 480

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            MKE+ + K+  CS +E+   V+ F+  DR+H Q+D+IY  L E+ + +      P+  +
Sbjct: 481 MMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKDN 540

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
                +D   R  +  HSEKLA+ +GL+++   + + I+KNLR+CEDCH F K+VSK+  
Sbjct: 541 REESNKDGFTRVGV--HSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVH 598

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           R++ +RD TRFHH+++G CSCKDYW
Sbjct: 599 RQLTVRDATRFHHFRNGSCSCKDYW 623



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 150/328 (45%), Gaps = 20/328 (6%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
            S+ YA  +F ++P       N  +   + +    + L+++  M   G+  D  +   +L
Sbjct: 201 GSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVL 260

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            + A       G +V       GF S+PF+   L+ MY  CG +  A+ +FD M  R +V
Sbjct: 261 SSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLV 320

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ +I GY  +G  +  + LF+EM  S +EPD      +LSACS AG    G    + +
Sbjct: 321 SWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFK-M 379

Query: 245 IDNNVALDAHLQ--STLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVE 301
           +  N  L+   +  S ++ +    G +  A+ L + + +K +  V  A++        VE
Sbjct: 380 MKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVE 439

Query: 302 DARLIFDQMV--EKDLICWSAMISG-YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
            A L F++++  E + I +  ++S  Y+  N+ +  L++   M+   +K D         
Sbjct: 440 LAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKD--------P 491

Query: 359 ACAHLGVLDQAQRIHLYI--DKNAFGGD 384
            C++   ++   R+H +I  D+N    D
Sbjct: 492 GCSY---VELKGRVHPFIVGDRNHLQSD 516



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 100/218 (45%), Gaps = 4/218 (1%)

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W+  +   A+     +AL L+ +M   G +P+  T    + +CA L +     + H  I 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFER--MRRRNVISWTSMINAFAIHGDARNA 435
           K     +  V   +I MY K   +++AR+VFE     R+  + + ++++ +  +     A
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
           ++ F +M +E +  N VT +G++ AC     ++ G  +  S T +Y          C + 
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCS-TLKYGFDSDVSVVNCFIT 195

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           ++ +   +  A +L + MP    ++ W ++++    +G
Sbjct: 196 MYMKCGSVNYAQKLFDEMP-VKGLISWNAMVSGYAQNG 232


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/612 (37%), Positives = 350/612 (57%), Gaps = 42/612 (6%)

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           DR  +  +LK     + L++G  VH    +  F  D  +   L+ MY  CG + +AR +F
Sbjct: 59  DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           +KM  RD V W+ +I GY Q+    + L  F +M      P+E  LS ++ A +      
Sbjct: 119 EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC 178

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G  +H F +                    CG        FD     N+ V +A++  Y+
Sbjct: 179 CGHQLHGFCV-------------------KCG--------FDS----NVHVGSALLDLYT 207

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           R G ++DA+L+FD +  ++ + W+A+I+G+A  +  ++AL+LF  M   G +P   +  S
Sbjct: 208 RYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYAS 267

Query: 356 VISACAHLGVLDQAQRIHLYIDKN-----AFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           +  AC+  G L+Q + +H Y+ K+     AF G     N ++DMYAK GS+  AR++F+R
Sbjct: 268 LFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAG-----NTLLDMYAKSGSIHDARKIFDR 322

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           + +R+V+SW S++ A+A HG  + A+ +F +M+   I PN ++F+ VL ACSH+GL+DEG
Sbjct: 323 LAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEG 382

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
              +  M  +  I P+  HY  +VDL GRA  L  AL  +E MP  P   IW +L+ ACR
Sbjct: 383 WHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACR 441

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
           +H   EL  +AA+ + +LDPD  G  V+L NIYA   RW D   +RK MKE G+ KE AC
Sbjct: 442 MHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPAC 501

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
           S +E+ N ++ F+  D  H Q ++I  K  EV++++K  GYVPD    +V ++ +E+   
Sbjct: 502 SWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVN 561

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           + +HSEK+AL + L+++   S I I KN+RVC DCH  IKL SKV  REI++RD  RFHH
Sbjct: 562 LQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHH 621

Query: 711 YKDGVCSCKDYW 722
           +KDG CSCKDYW
Sbjct: 622 FKDGNCSCKDYW 633



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 171/365 (46%), Gaps = 32/365 (8%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           SL  A  +F ++P          I   S   RP  AL  F +ML  G + + F+   ++K
Sbjct: 110 SLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIK 169

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A A       G Q+HG   K GF S+  V + L+ +Y   G + DA+L+FD +  R+ V 
Sbjct: 170 AAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS 229

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ +I G+ +    ++ L LF+ M      P     + +  ACS  G L  G+ VH ++I
Sbjct: 230 WNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMI 289

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
            +   L A   +TL+ MYA  G +  A+ +FD++  +++V   ++++ Y           
Sbjct: 290 KSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAY----------- 338

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
                               A++   +EA+  F EM+  G++P++++ LSV++AC+H G+
Sbjct: 339 --------------------AQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGL 378

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMIN 424
           LD+    +  + K+    +      ++D+  + G L  A    E M      + W +++N
Sbjct: 379 LDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLN 438

Query: 425 AFAIH 429
           A  +H
Sbjct: 439 ACRMH 443



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 151/326 (46%), Gaps = 33/326 (10%)

Query: 208 EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           +++ S +  D    + +L  C+    L  G  VH  I+ +    D  + +TL+ MYA CG
Sbjct: 50  DLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCG 109

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
            ++ A+ +F+K+  ++ V  T ++SGYS+  +  DA L F+QM+                
Sbjct: 110 SLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLR--------------- 154

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
                            G  P++ T+ SVI A A         ++H +  K  F  ++ V
Sbjct: 155 ----------------FGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHV 198

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
            +A++D+Y + G ++ A+ VF+ +  RN +SW ++I   A       AL  F  M  +  
Sbjct: 199 GSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGF 258

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            P+  ++  +  ACS  G +++G+ + A M         +     ++D++ ++  + +A 
Sbjct: 259 RPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAG-NTLLDMYAKSGSIHDAR 317

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHG 533
           ++ + +    +VV W SL+ A   HG
Sbjct: 318 KIFDRLA-KRDVVSWNSLLTAYAQHG 342



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 118/247 (47%), Gaps = 43/247 (17%)

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           N+++   +  D+    +++  C    +L Q + +H +I ++ F  D+ + N +++MYAKC
Sbjct: 49  NDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKC 108

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           GSLE AR+VFE+M +R+ ++WT++I+ ++ H    +AL+FFN+M      PN  T   V+
Sbjct: 109 GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVI 168

Query: 459 YA--------CSHA---------------------------GLVDEGREIFASMTNEYNI 483
            A        C H                            GL+D+ + +F ++ +  ++
Sbjct: 169 KAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV 228

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETM---PFAPNVVIWGSLMAACRVHGEIELAEF 540
                 +  ++    R +   +ALEL + M    F P+   + SL  AC   G +E  ++
Sbjct: 229 S-----WNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKW 283

Query: 541 AAKQLLQ 547
               +++
Sbjct: 284 VHAYMIK 290


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/574 (41%), Positives = 354/574 (61%), Gaps = 26/574 (4%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE-----VLNLFEEMKMSN--VEPDEMVLSK 223
           A  +F++M  R+   W+ +I G+ ++   DE      + LF EM MS+  +EP+      
Sbjct: 71  AHKIFNQMPQRNCFSWNTIIRGFSES---DEDKALIAITLFCEM-MSDEFIEPNRFTFPS 126

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           +L AC++ G +  G+ +H   +      D  + S L+ MY  CG M  A  LF K +++ 
Sbjct: 127 VLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIER 186

Query: 284 --------------LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
                         +V+   M+ GY R G  + AR++FD+M ++ ++ W+ MISGY++N 
Sbjct: 187 EMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNG 246

Query: 330 HPQEALKLFNEMQVC-GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
             ++A+++F EM+    ++P+ VT++SV+ A + LG L+  + +HLY + +    D  + 
Sbjct: 247 FFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLG 306

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           +A+IDMY+KCG +E A  VFER+ R NVI+W++MIN FAIHG A +A+  F KM+   + 
Sbjct: 307 SALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVR 366

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
           P+ V +I +L ACSHAGLV+EGR  F+ M +   + P+ EHYGCMVDL GR  LL EA E
Sbjct: 367 PSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEE 426

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
            +  MP  P+ VIW +L+ ACR+H  +E+ +  A  L+ + P   GA V LSN+YA    
Sbjct: 427 FILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGN 486

Query: 569 WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
           W +V E+R  MKE  I K+  CS I+++  ++EFL  D SH +  +I   L E+  +L+ 
Sbjct: 487 WSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRL 546

Query: 629 AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
           AGY P     L++LE+E+K   + +HSEK+A  +GLIS+     IRIVKNLR+CEDCH+ 
Sbjct: 547 AGYRPITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCHSS 606

Query: 689 IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           IKL+SKVY R+I +RDR RFHH++DG CSC DYW
Sbjct: 607 IKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 198/423 (46%), Gaps = 91/423 (21%)

Query: 6   QPTKPLTLPTSTA--------ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSF 57
            PT+ L  P   +        I++C ++  + Q HA  +K   S   +++L    +L   
Sbjct: 2   NPTQTLYSPGGNSPASSLFPQINTCRTIRDLSQIHAVFIK---SGQIRDTLAAAEILRFC 58

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKH--ALKVFLKML-NEGLT 114
           +        L YA  IF+Q+P       N  IR  S S   K   A+ +F +M+ +E + 
Sbjct: 59  ATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIE 118

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD---- 170
            +RF+FP +LKA A+   + +G Q+HGL  K GFG D FV + LV MY  CG + D    
Sbjct: 119 PNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVL 178

Query: 171 -----------------------------------------ARLMFDKMSYRDIVPWSVM 189
                                                    AR++FDKM  R +V W+ M
Sbjct: 179 FYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTM 238

Query: 190 IDGYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           I GY QNG F + + +F EMK   ++ P+ + L  +L A SR G+L  GE +H +  D+ 
Sbjct: 239 ISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSG 298

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           + +D  L S LI MY+ CG ++ A  +F+++  +N++  +AM++G++  GQ  D      
Sbjct: 299 IRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGD------ 352

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
                                    A+  F +M+  G++P  V  +++++AC+H G++++
Sbjct: 353 -------------------------AIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEE 387

Query: 369 AQR 371
            +R
Sbjct: 388 GRR 390



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 26/200 (13%)

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALI----FFNKMKDESIDPNGVTFIG 456
           L+ A ++F +M +RN  SW ++I  F+   D   ALI    F   M DE I+PN  TF  
Sbjct: 68  LDYAHKIFNQMPQRNCFSWNTIIRGFS-ESDEDKALIAITLFCEMMSDEFIEPNRFTFPS 126

Query: 457 VLYACSHAGLVDEGREI------FASMTNEY---NIPPKYEHYGCMVD---LFGRANLLR 504
           VL AC+  G + +G++I      +    +E+   N+   Y   G M D   LF +  + R
Sbjct: 127 VLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIER 186

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI-- 562
           E + +++       VV+W  +     + G + L +  A ++L  D     ++V  + +  
Sbjct: 187 EMVMMIDRRKRDGEVVLWNVM-----IDGYMRLGDCKAARML-FDKMRQRSVVSWNTMIS 240

Query: 563 -YAKDKRWQDVGELRKSMKE 581
            Y+++  ++D  E+ + MK+
Sbjct: 241 GYSQNGFFKDAVEVFREMKK 260


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/652 (34%), Positives = 367/652 (56%), Gaps = 32/652 (4%)

Query: 70   ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
            A+ +F+++P   +   N  I   S +     A+++F++M  +G  +D  +   +L A A+
Sbjct: 471  AVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQ 530

Query: 130  AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            +     G  VHG   K G   +  +   L+ MY  C        +F  M  +++V W+ M
Sbjct: 531  SRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAM 590

Query: 190  IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
            I  Y + GLFD+V  L +EM +  + PD   ++  L A +   +L  G++VH + I N +
Sbjct: 591  ITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGM 650

Query: 250  ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                                            K L V+ A++  Y +   VE+ARLIFD+
Sbjct: 651  E-------------------------------KLLPVANALMEMYVKCRNVEEARLIFDR 679

Query: 310  MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
            +  KD+I W+ +I GY+ NN P E+  LF++M +   +P+ VTM  ++ A A +  L++ 
Sbjct: 680  VTNKDVISWNTLIGGYSRNNFPNESFSLFSDM-LLQFRPNAVTMTCILPAAASISSLERG 738

Query: 370  QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
            + IH Y  +  F  D   +NA++DMY KCG+L  AR +F+R+ ++N+ISWT MI  + +H
Sbjct: 739  REIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMH 798

Query: 430  GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
            G  ++A+  F +M+   I+P+  +F  +LYAC H+GL  EGR  F +M  EY I PK +H
Sbjct: 799  GFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKH 858

Query: 490  YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
            Y C+VDL  R   L+EALE +E+MP  P+  IW SL+  CR+H  ++LAE  A ++ +L+
Sbjct: 859  YTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLE 918

Query: 550  PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
            P++ G  VLL+NIYA+ +RW+ V +L+  +  RG+ +    S IE+ ++V+ F+  +R+H
Sbjct: 919  PENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNH 978

Query: 610  KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
               ++I E L++V   ++  G+ P    AL+  +D    E +  HS KLA+ +G+++  +
Sbjct: 979  PDWNRIAEFLDDVARRMRQEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLPE 1038

Query: 670  DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
               IR+ KN +VC  CH   K +SK+  REI++RD +RFH ++ G CSC+ Y
Sbjct: 1039 GRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRFHRFEGGRCSCRGY 1090



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 143/534 (26%), Positives = 234/534 (43%), Gaps = 88/534 (16%)

Query: 24  SLTHMKQTHAQILKLSHSH-HSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP--AP 80
           SL   K+ HA I   S +    + S+L K L+ ++         L  A ++F  +P  A 
Sbjct: 112 SLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAY----LKCGDLGEARTVFDGMPPQAA 167

Query: 81  PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVH 140
             RV    + A + +   + A+ +F +M   G++ D  +   +LK ++    L EG  +H
Sbjct: 168 DVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIH 227

Query: 141 GLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
           GL  KLG G    V   L+ +Y  CG++ DA  +FD M  RD + W+ MI G F NG   
Sbjct: 228 GLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHG 287

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL--------- 251
             ++LF +M     E   + +  +L AC+  G    G+AVH + + + +           
Sbjct: 288 TAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGI 347

Query: 252 -DAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            DA L S L+ MY  CG M  A+ +FD +  K N+ V   ++ GY++ G+ E++  +F Q
Sbjct: 348 DDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQ 407

Query: 310 MVE--------------KDLICWS-------------------------AMISGYAENN- 329
           M E              K + C S                         A+IS YA++N 
Sbjct: 408 MHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNM 467

Query: 330 ----------HPQ--------------------EALKLFNEMQVCGMKPDKVTMLSVISA 359
                      P+                    EA++LF  M   G + D VT+LSV+ A
Sbjct: 468 IGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPA 527

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           CA        + +H Y  K    G+  + NA++DMY+ C   +S  ++F  M ++NV+SW
Sbjct: 528 CAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSW 587

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           T+MI ++   G          +M  + I P+       L+A +    + +G+ +
Sbjct: 588 TAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSV 641


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/731 (33%), Positives = 389/731 (53%), Gaps = 75/731 (10%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L  A  +F +IPAP +R  N  IRA SW      A+ ++  ML   +  ++++FP +LKA
Sbjct: 50  LALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKA 109

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            +    L  G  +H      G  +D FV T L+ +Y  C +   AR +F KM  RD+V W
Sbjct: 110 CSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAW 169

Query: 187 SVMIDGYFQNGLFDEVL-NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-------- 237
           + M+ GY  +G++   + +L +      + P+   L  +L   ++ G L  G        
Sbjct: 170 NAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCL 229

Query: 238 ----EAVHEFIIDNNVALDAHLQ----------------------STLITMYANCGCMDM 271
               E   E ++     LD + +                      S LI  +  C  M  
Sbjct: 230 RACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTE 289

Query: 272 AKGLFDKVLLK----------------------------------------NLVVSTAMV 291
           A  LF  +L++                                        +L  S +++
Sbjct: 290 AFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLL 349

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
           S Y++AG + +A + FD++  KD I + A++SG  +N   +EA  +F +MQ C M+PD  
Sbjct: 350 SMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIA 409

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           TM+S+I AC+HL  L   +  H  +       +  + N++IDMYAKCG ++ +R+VF++M
Sbjct: 410 TMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKM 469

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471
             R+V+SW +MI  + IHG  + A   F  MK++   P+ VTFI ++ ACSH+GLV EG+
Sbjct: 470 PARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGK 529

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
             F +MT++Y I P+ EHY CMVDL  R  LL EA + +++MP   +V +WG+L+ ACR+
Sbjct: 530 HWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRI 589

Query: 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACS 591
           H  I+L +  ++ + +L P+  G  VLLSNI++   R+ +  E+R   K +G  K    S
Sbjct: 590 HKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYS 649

Query: 592 RIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVI 651
            IE+N  ++ F+  D+SH  +  IY +L+ ++ ++K  GY  D    L DLE+EEK + +
Sbjct: 650 WIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKAL 709

Query: 652 LWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHY 711
           L+HSEKLA+ +G++S  +D  I + KNLRVC DCH  IK ++ V  R I++RD  RFHH+
Sbjct: 710 LYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHF 769

Query: 712 KDGVCSCKDYW 722
           K+G CSC ++W
Sbjct: 770 KNGQCSCGNFW 780



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 165/392 (42%), Gaps = 38/392 (9%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           G++  AR +FD++   D   ++ +I  Y   G F   ++L+  M    V P++     +L
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
            ACS   +L  G  +H       +  D  + + LI +Y  C     A+ +F K+ ++++V
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
              AM++GY+  G    A                                 L +     G
Sbjct: 168 AWNAMLAGYANHGMYHHA------------------------------IAHLLDMQDHGG 197

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD---LRVNNAIIDMYAKCGSLE 402
           ++P+  T++S++   A  G L Q   IH Y  +     +   + +  A++DMYAKC  L 
Sbjct: 198 LRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLV 257

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG-VLYAC 461
            A  VF  M  RN ++W+++I  F +      A   F  M  E +     T +   L  C
Sbjct: 258 YACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVC 317

Query: 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI 521
           +    +  G ++ A +  +  I         ++ ++ +A L+ EA    + +    + + 
Sbjct: 318 ASLADLHMGTQLHA-LIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIA-VKDTIS 375

Query: 522 WGSLMAACRVHGEIELA--EFAAKQLLQLDPD 551
           +G+L++ C  +G+ E A   F   Q   ++PD
Sbjct: 376 YGALLSGCVQNGKAEEAFLVFKKMQACNMEPD 407



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 10/158 (6%)

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G L  AR+VF+R+   +  ++ ++I A++  G    A+  +  M    + PN  TF  VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 459 YACSHAGLVD--EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
            ACS   LVD   GR I  +      +         ++DL+ R      A  +   MP  
Sbjct: 108 KACS--ALVDLRAGRTI-HAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMR 164

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
            +VV W +++A    HG   +   A   LL +  DH G
Sbjct: 165 -DVVAWNAMLAGYANHG---MYHHAIAHLLDMQ-DHGG 197


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/625 (35%), Positives = 357/625 (57%), Gaps = 53/625 (8%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           +  L+++ +M+  G+ +D  +   +L   A +  L  G  VH L  K  F         L
Sbjct: 233 ERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTL 292

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + MY  CG +  A  +F+KM  R++V W+ MI GY ++G  D  + L ++M+   V+ D 
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDV 352

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           +  + IL AC+R+G+L  G+ VH++I  NN+                             
Sbjct: 353 VATTSILHACARSGSLDNGKDVHDYIKANNME---------------------------- 384

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
               NL V  A++  Y++ G ++ A  +F  MV KD+I W+ MI                
Sbjct: 385 ---SNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGE-------------- 427

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
                  +KPD  TM  ++ ACA L  L++ + IH YI +N +  D  V NA++D+Y KC
Sbjct: 428 -------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G L  AR +F+ +  ++++SWT MI+ + +HG    A+  FN+M+D  I+P+ V+FI +L
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
           YACSH+GL+++G   F  M N++NI PK EHY CMVDL  R   L +A E +ET+P AP+
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPD 600

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
             IWG+L+  CR++ +IELAE  A+++ +L+P++ G  VLL+NIYA+ ++W++V  +R+ 
Sbjct: 601 ATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREK 660

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADR-SHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
           + ++G+ K   CS IE+  +V  F++ +  SH  + +I   L ++  ++K  GY P    
Sbjct: 661 IGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKY 720

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
           AL++ ++ +K   +  HSEKLA+ +GL++      +R+ KNLRVC DCH   K +SK   
Sbjct: 721 ALINADEMQKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETR 780

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           REIV+RD  RFHH+K+G CSC+ +W
Sbjct: 781 REIVLRDSNRFHHFKNGYCSCRGFW 805



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 186/367 (50%), Gaps = 24/367 (6%)

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           R +  ++  I  + Q G  +  + L    + S +E      S +L  C+ + +L+ G+ V
Sbjct: 64  RQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETK--TYSSVLQLCAGSKSLTDGKKV 121

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H  I  NNVA+D  L   L+++YA CG +   + +FD +  KN+ +   MVS Y++ G  
Sbjct: 122 HSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDF 181

Query: 301 --------------------EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                               E A  +FD++ ++D+I W++MISGY  N   +  L+++ +
Sbjct: 182 KESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQ 241

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M   G+  D  T++SV+  CA+ G L   + +H    K+ F   +  +N ++DMY+KCG 
Sbjct: 242 MMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGD 301

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           L+ A  VFE+M  RNV+SWTSMI  +   G +  A+    +M+ E +  + V    +L+A
Sbjct: 302 LDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHA 361

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           C+ +G +D G+++   +    N+         ++D++ +   +  A  +  TM    +++
Sbjct: 362 CARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYTKCGSMDGANSVFSTM-VVKDII 419

Query: 521 IWGSLMA 527
            W +++ 
Sbjct: 420 SWNTMIG 426



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 157/344 (45%), Gaps = 55/344 (15%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           AL +F ++           I   +   R   A+++  +M  EG+ +D  +   IL A AR
Sbjct: 305 ALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACAR 364

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           +  L  G  VH         S+ FV   L+ MY  CG +  A  +F  M  +DI+ W+ M
Sbjct: 365 SGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTM 424

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I                       ++PD   ++ IL AC+    L  G+ +H +I+ N  
Sbjct: 425 I---------------------GELKPDSRTMACILPACASLSALERGKEIHGYILRNGY 463

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
           + D H+ + L+ +Y  CG + +A+ LFD +  K+LV  T M+SGY   G           
Sbjct: 464 SSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHG----------- 512

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                               +  EA+  FNEM+  G++PD+V+ +S++ AC+H G+L+Q 
Sbjct: 513 --------------------YGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG 552

Query: 370 QRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERM 411
            R   YI KN F  + ++ +   ++D+ ++ G+L  A E  E +
Sbjct: 553 WRF-FYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETL 595


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/543 (41%), Positives = 343/543 (63%), Gaps = 3/543 (0%)

Query: 53  LLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG 112
           L+ S++L   +PS++  A ++F QI  P     N  IR  S S +P  A++++  M  +G
Sbjct: 16  LIKSYAL---SPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQG 72

Query: 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR 172
           L  +  ++  + KA AR   +  G  +H    KLGF S  +V   L+ MYG+CG +  A+
Sbjct: 73  LLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQ 132

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
            +FD+M  RD+V W+ ++ GY Q   F EVL +FE M+++ V+ D + + K++ AC+  G
Sbjct: 133 KVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLG 192

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
                +A+ ++I +NNV +D +L +TLI MY   G + +A+G+FD++  +NLV   AM+ 
Sbjct: 193 EWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIM 252

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
           GY +AG +  AR +FD M ++D+I W+ MI+ Y++     EAL+LF EM    +KPD++T
Sbjct: 253 GYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEIT 312

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           + SV+SACAH G LD  +  H YI K     D+ V NA+IDMY KCG +E A EVF+ MR
Sbjct: 313 VASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMR 372

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
           +++ +SWTS+I+  A++G A +AL +F++M  E + P+   F+G+L AC+HAGLVD+G E
Sbjct: 373 KKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLE 432

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
            F SM   Y + P+ +HYGC+VDL  R+  L+ A E ++ MP  P+VVIW  L++A +VH
Sbjct: 433 YFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVH 492

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
           G I LAE A K+LL+LDP + G  VL SN YA   RW+D  ++R+ M++  + K    S 
Sbjct: 493 GNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQKPSGSSC 552

Query: 593 IEM 595
           IEM
Sbjct: 553 IEM 555


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/685 (36%), Positives = 378/685 (55%), Gaps = 78/685 (11%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           IF +IP+P   +  K I   + + R   ALK+F          DR S   ++   +  +G
Sbjct: 34  IFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLF----------DRMSVRDVVSWNSMIKG 83

Query: 133 LLEGMQVHGLGTKLGFGSDP----FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
            L+   + G+ T+L F   P       T +V  Y   G++  A+ +F  M  +D+  W+ 
Sbjct: 84  CLDCGNL-GMATRL-FDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNA 141

Query: 189 MIDGYFQNGLFDEVLNLFEEMKM-------------------------------SNVEPD 217
           M+ GYF+NG  +E + LFEEM +                               S VEP 
Sbjct: 142 MVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPT 201

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
               + +LSAC+ A   + G  VH  ++         +  +LIT YANC           
Sbjct: 202 WSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCM---------- 251

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                                ++E A  IF++ + K+++ W+A+++ Y  NN  Q+AL++
Sbjct: 252 ---------------------KIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRV 290

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F +M   G  P++ T    + AC  L  LD+ + IH    K     D+ V N+++ MY +
Sbjct: 291 FGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTE 350

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CG++ SA  VF  +  ++++SW S+I   A HG    ALIFFN+M    +DPN +TF G+
Sbjct: 351 CGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGL 410

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L ACS +G++ +GR  F  ++   +   + +HY CMVD+ GR   L EA ELV  MP   
Sbjct: 411 LSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKA 470

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
           N +IW +L++ACRVH  +E+AE AAK +L L+P+   A VLLSNIYA   RW DV  +R 
Sbjct: 471 NSMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRV 530

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            MK+ G++K+   S + +  + +EFL+ADRSH  +++IYEKL+ +  +LK  GYVPD   
Sbjct: 531 KMKQGGLVKQPGSSWVVLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKF 590

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
           AL D+EDE+K E++ +HSE+LA+ +GL+S+ + S I ++KNLRVC DCH+ IKL+SK+  
Sbjct: 591 ALHDVEDEQKEEMLSFHSERLAIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVG 650

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           R+IV+RD  RFHH+K+G+CSC DYW
Sbjct: 651 RKIVVRDSGRFHHFKNGICSCSDYW 675



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 192/392 (48%), Gaps = 12/392 (3%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           ARL+FDK+   ++  ++ MI GY +N    + L LF+ M + +V    +  + ++  C  
Sbjct: 31  ARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDV----VSWNSMIKGCLD 86

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
            GNL     + + + + NV       +T++  Y   G +++A+ LF  + +K++    AM
Sbjct: 87  CGNLGMATRLFDEMPEKNVI----SWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAM 142

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           V GY   G+VE+   +F++M  +D+I W++MI G   N   +EAL +F +M   G++P  
Sbjct: 143 VHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTW 202

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
            T   V+SACA+    +   ++H ++ K        ++ ++I  YA C  +E A ++F  
Sbjct: 203 STFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNE 262

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
              +NV+ WT+++ A+  +   ++AL  F  M      PN  TF   L AC     +D+G
Sbjct: 263 TLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKG 322

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
           +EI  +M  +  +         +V ++     +  A+ +   +    ++V W S++    
Sbjct: 323 KEIH-TMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNIN-EKDIVSWNSIIVGSA 380

Query: 531 VHGEIELAEFAAKQLLQ--LDPDHDGALVLLS 560
            HG    A     Q+++  +DP+      LLS
Sbjct: 381 QHGFGLWALIFFNQMIRRGVDPNEITFTGLLS 412



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 135/270 (50%), Gaps = 30/270 (11%)

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           +D A+ +FDK+   NL + T M++GY+R  ++ DA  +FD+M  +D++ W++MI G  + 
Sbjct: 28  LDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDC 87

Query: 329 NHPQEALKLFNEMQVCGMKPDK--VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
            +   A +LF+EM      P+K  ++  ++++     G ++ AQR  L++D +    D+ 
Sbjct: 88  GNLGMATRLFDEM------PEKNVISWTTMVNGYLKFGRVELAQR--LFLDMHV--KDVA 137

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
             NA++  Y + G +E    +FE M  R+VISWTSMI    ++G +  AL  F KM    
Sbjct: 138 AWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSG 197

Query: 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR-- 504
           ++P   TF  VL AC++A   + G ++   +             GC    F   +L+   
Sbjct: 198 VEPTWSTFACVLSACANAVEFNLGVQVHGHVVK----------LGCFFHEFISVSLITFY 247

Query: 505 ------EALELVETMPFAPNVVIWGSLMAA 528
                 E    +       NVV W +L+ A
Sbjct: 248 ANCMKIEHAHKIFNETLTKNVVKWTALLTA 277


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/664 (36%), Positives = 361/664 (54%), Gaps = 58/664 (8%)

Query: 86   NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
            N  I ++S + R + AL     M+ +G+  D  +   +L A ++ E L  G ++H    +
Sbjct: 503  NTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALR 562

Query: 146  LG-FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
             G    + FV T LV MY  C +    RL+FD +  R +  W+ ++ GY +N   D+ L 
Sbjct: 563  NGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALR 622

Query: 205  LFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            LF EM   S   P+    + +L AC R    S  E +H +I+      D ++Q+ L    
Sbjct: 623  LFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNAL---- 678

Query: 264  ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
                 MDM                      YSR G+VE ++ IF +M ++D++ W+ MI+
Sbjct: 679  -----MDM----------------------YSRMGRVEISKTIFGRMNKRDIVSWNTMIT 711

Query: 324  GYAENNHPQEALKLFNEMQV------------------CGMKPDKVTMLSVISACAHLGV 365
            G        +AL L +EMQ                      KP+ VT+++V+  CA L  
Sbjct: 712  GCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAA 771

Query: 366  LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
            L + + IH Y  K     D+ V +A++DMYAKCG L  A  VF++M  RNVI+W  +I A
Sbjct: 772  LGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMA 831

Query: 426  FAIHGDARNALIFFNKM------KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            + +HG    AL  F  M        E I PN VT+I +  ACSH+G+VDEG  +F +M  
Sbjct: 832  YGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKA 891

Query: 480  EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV-IWGSLMAACRVHGEIELA 538
             + + P+ +HY C+VDL GR+  ++EA EL+ TMP   N V  W SL+ ACR+H  +E  
Sbjct: 892  SHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFG 951

Query: 539  EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
            E AAK L  L+P+     VL+SNIY+    W     +RK MKE G+ KE  CS IE  +E
Sbjct: 952  EIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDE 1011

Query: 599  VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
            V++FL+ D SH Q+ +++E L  +   ++  GYVPDI   L +++DEEK  ++  HSE+L
Sbjct: 1012 VHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERL 1071

Query: 659  ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
            A+ +GL+++   + IR+ KNLRVC DCH   K++SK+  REI++RD  RFHH+ +G CSC
Sbjct: 1072 AIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSC 1131

Query: 719  KDYW 722
             DYW
Sbjct: 1132 GDYW 1135



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 137/459 (29%), Positives = 205/459 (44%), Gaps = 45/459 (9%)

Query: 88  FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
            +R+ + S   + A+  +  ML      D F+FP +LKA A    L  G Q+H    K G
Sbjct: 301 LLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFG 360

Query: 148 FG--SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
               S   V   LV MYG CG +  AR +FD +  RD V W+ MI    +   ++  L+L
Sbjct: 361 HAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHL 420

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRA-GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           F  M   NV+P    L  +  ACS   G +  G+ VH + + N   L  +  + L+TMYA
Sbjct: 421 FRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYTNNALVTMYA 479

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
                                          R G+V DA+ +F     KDL+ W+ +IS 
Sbjct: 480 -------------------------------RLGRVNDAKALFGVFDGKDLVSWNTVISS 508

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
            ++N+  +EAL     M V G++PD VT+ SV+ AC+ L  L   + IH Y  +N   GD
Sbjct: 509 LSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRN---GD 565

Query: 385 L----RVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
           L     V  A++DMY  C   +  R VF+ + RR V  W +++  +A +     AL  F 
Sbjct: 566 LIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFV 625

Query: 441 KMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499
           +M  ES   PN  TF  VL AC    +  +   I   +        KY     M D++ R
Sbjct: 626 EMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALM-DMYSR 684

Query: 500 ANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
              +  +  +   M    ++V W +++  C V G  + A
Sbjct: 685 MGRVEISKTIFGRMN-KRDIVSWNTMITGCIVCGRYDDA 722



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 184/387 (47%), Gaps = 63/387 (16%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAE 131
           +F  +      V N  +   + +     AL++F++M++E     +  +F  +L A  R +
Sbjct: 592 VFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCK 651

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
              +   +HG   K GFG D +VQ  L+ MY   G++  ++ +F +M+ RDIV W+ MI 
Sbjct: 652 VFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMIT 711

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVE------------------PDEMVLSKILSACSRAGN 233
           G    G +D+ LNL  EM+    E                  P+ + L  +L  C+    
Sbjct: 712 GCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAA 771

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           L  G+ +H + +   +A+D  + S L+ MYA CGC+++A  +FD++ ++N++        
Sbjct: 772 LGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVIT------- 824

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG------MK 347
                                   W+ +I  Y  +   +EAL+LF  M   G      ++
Sbjct: 825 ------------------------WNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIR 860

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLY-IDKNAFGGDLRVNN--AIIDMYAKCGSLESA 404
           P++VT +++ +AC+H G++D+   +HL+   K + G + R ++   ++D+  + G ++ A
Sbjct: 861 PNEVTYIAIFAACSHSGMVDEG--LHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEA 918

Query: 405 REVFERMRR--RNVISWTSMINAFAIH 429
            E+   M      V +W+S++ A  IH
Sbjct: 919 YELINTMPSNLNKVDAWSSLLGACRIH 945



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 3/161 (1%)

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W  ++     ++  ++A+  +  M      PD     +V+ A A +  L   ++IH ++ 
Sbjct: 298 WIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVF 357

Query: 378 K--NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
           K  +A    + V N++++MY KCG L +AR+VF+ +  R+ +SW SMI       +   +
Sbjct: 358 KFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELS 417

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHA-GLVDEGREIFA 475
           L  F  M  E++DP   T + V +ACSH  G V  G+++ A
Sbjct: 418 LHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHA 458


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/658 (36%), Positives = 372/658 (56%), Gaps = 43/658 (6%)

Query: 71  LSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARA 130
           LSI S   A  S  +N+ I+++    + K AL+V    L++  +  + ++  ++      
Sbjct: 37  LSISSGAGAKIS--NNQLIQSLCKEGKLKQALRV----LSQESSPSQQTYELLILCCGHR 90

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
             L +G++VH      G   DPF+ T L+GMY   G +  AR +FDK   R I  W+ + 
Sbjct: 91  SSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALF 150

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC----SRAGNLSYGEAVHEFIID 246
                 G  +EVL L+ +M    VE D    + +L AC      A +L+ G+ +H  +  
Sbjct: 151 RALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTR 210

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
                  ++ +TL+ MYA  GC+D A  +F+ + ++N+V  +AM++ Y            
Sbjct: 211 RGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACY------------ 258

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM--QVCGMKPDKVTMLSVISACAHLG 364
                              A+N    EAL+ F EM  +     P+ VTM+SV+ ACA L 
Sbjct: 259 -------------------AKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLA 299

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L+Q + IH YI +      L V +A++ MY +CG L+  + VF+RM  R+V+SW S+I+
Sbjct: 300 ALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLIS 359

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
           ++ +HG  R A+  F +M      P  VTF+ VL ACSH GLV+EG+ +F SM  ++ I 
Sbjct: 360 SYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIK 419

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P+ EHY CMVDL GRAN L EA ++V+ M   P   +WGSL+ +CR+HG +ELAE A+++
Sbjct: 420 PQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           L  L+P + G  VLL++IYA+ + W +V  ++K ++ RG+ K      +E+  ++Y F++
Sbjct: 480 LFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVS 539

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            D  +   +QI+  L ++  ++K  GY+P     L +LE EEK  ++L HSEKLAL +GL
Sbjct: 540 MDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGL 599

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           I++ K   IRI KNLR+CEDCH F K +SK   +EI++RD  RFH +K+GVCSC DYW
Sbjct: 600 INTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 203/442 (45%), Gaps = 49/442 (11%)

Query: 1   MSTLSQPTKPLTLPTSTAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSF 57
           +  LSQ + P        I  C   SSL+   + H  IL    +   Q+  L   L+  +
Sbjct: 66  LRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILD---NGSDQDPFLATKLIGMY 122

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117
           S       S+ YA  +F +       V N   RA++ +   +  L ++ KM   G+  DR
Sbjct: 123 S----DLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDR 178

Query: 118 FSFPPILKAIARAE----GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
           F++  +LKA   +E     L +G ++H   T+ G+ S  ++ T LV MY   G +  A  
Sbjct: 179 FTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASY 238

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM--KMSNVEPDEMVLSKILSACSRA 231
           +F+ M  R++V WS MI  Y +NG   E L  F EM  +  +  P+ + +  +L AC+  
Sbjct: 239 VFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASL 298

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
             L  G  +H +I+   +     + S L+TMY  CG +D+ + +FD++  +++V   +++
Sbjct: 299 AALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLI 358

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
           S Y                           + GY      ++A+++F EM   G  P  V
Sbjct: 359 SSYG--------------------------VHGYG-----RKAIQIFEEMLANGASPTPV 387

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           T +SV+ AC+H G++++ +R+   + ++      +     ++D+  +   L+ A ++ + 
Sbjct: 388 TFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQD 447

Query: 411 MRRR-NVISWTSMINAFAIHGD 431
           MR       W S++ +  IHG+
Sbjct: 448 MRTEPGPKVWGSLLGSCRIHGN 469


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/731 (33%), Positives = 389/731 (53%), Gaps = 75/731 (10%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L  A  +F +IPAP +R  N  IRA SW      A+ ++  ML   +  ++++FP +LKA
Sbjct: 50  LALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKA 109

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            +    L  G  +H      G  +D FV T L+ +Y  C +   AR +F KM  RD+V W
Sbjct: 110 CSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAW 169

Query: 187 SVMIDGYFQNGLFDEVL-NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-------- 237
           + M+ GY  +G++   + +L +      + P+   L  +L   ++ G L  G        
Sbjct: 170 NAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCL 229

Query: 238 ----EAVHEFIIDNNVALDAHLQ----------------------STLITMYANCGCMDM 271
               E   E ++     LD + +                      S LI  +  C  M  
Sbjct: 230 RACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTE 289

Query: 272 AKGLFDKVLLK----------------------------------------NLVVSTAMV 291
           A  LF  +L++                                        +L  S +++
Sbjct: 290 AFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLL 349

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
           S Y++AG + +A + FD++  KD I + A++SG  +N   +EA  +F +MQ C M+PD  
Sbjct: 350 SMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIA 409

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           TM+S+I AC+HL  L   +  H  +       +  + N++IDMYAKCG ++ +R+VF++M
Sbjct: 410 TMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKM 469

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471
             R+V+SW +MI  + IHG  + A   F  MK++   P+ VTFI ++ ACSH+GLV EG+
Sbjct: 470 PARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGK 529

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
             F +MT++Y I P+ EHY CMVDL  R  LL EA + +++MP   +V +WG+L+ ACR+
Sbjct: 530 HWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRI 589

Query: 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACS 591
           H  I+L +  ++ + +L P+  G  VLLSNI++   R+ +  E+R   K +G  K    S
Sbjct: 590 HKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYS 649

Query: 592 RIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVI 651
            IE+N  ++ F+  D+SH  +  IY +L+ ++ ++K  GY  D    L DLE+EEK + +
Sbjct: 650 WIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKAL 709

Query: 652 LWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHY 711
           L+HSEKLA+ +G++S  +D  I + KNLRVC DCH  IK ++ V  R I++RD  RFHH+
Sbjct: 710 LYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHF 769

Query: 712 KDGVCSCKDYW 722
           K+G CSC ++W
Sbjct: 770 KNGQCSCGNFW 780



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 165/392 (42%), Gaps = 38/392 (9%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           G++  AR +FD++   D   ++ +I  Y   G F   ++L+  M    V P++     +L
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
            ACS   +L  G  +H       +  D  + + LI +Y  C     A+ +F K+ ++++V
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
              AM++GY+  G    A                                 L +     G
Sbjct: 168 AWNAMLAGYANHGMYHHA------------------------------IAHLLDMQDHGG 197

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD---LRVNNAIIDMYAKCGSLE 402
           ++P+  T++S++   A  G L Q   IH Y  +     +   + +  A++DMYAKC  L 
Sbjct: 198 LRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLV 257

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG-VLYAC 461
            A  VF  M  RN ++W+++I  F +      A   F  M  E +     T +   L  C
Sbjct: 258 YACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVC 317

Query: 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI 521
           +    +  G ++ A +  +  I         ++ ++ +A L+ EA    + +    + + 
Sbjct: 318 ASLADLHMGTQLHA-LIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIA-VKDTIS 375

Query: 522 WGSLMAACRVHGEIELA--EFAAKQLLQLDPD 551
           +G+L++ C  +G+ E A   F   Q   ++PD
Sbjct: 376 YGALLSGCVQNGKAEEAFLVFKKMQACNMEPD 407



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 10/158 (6%)

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G L  AR+VF+R+   +  ++ ++I A++  G    A+  +  M    + PN  TF  VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 459 YACSHAGLVD--EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
            ACS   LVD   GR I  +      +         ++DL+ R      A  +   MP  
Sbjct: 108 KACS--ALVDLRAGRTI-HAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMR 164

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
            +VV W +++A    HG   +   A   LL +  DH G
Sbjct: 165 -DVVAWNAMLAGYANHG---MYHHAIAHLLDMQ-DHGG 197


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/623 (36%), Positives = 349/623 (56%), Gaps = 33/623 (5%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A ++F +M   G+     +   +++A      L  G  +HG    LG G+D  V T  V 
Sbjct: 215 AFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVD 274

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY   G I  AR +F KM  R++V W+ MI G  +NGL  E  +LF  +  S+   D   
Sbjct: 275 MYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTT 334

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           +  +L  CS+  +L+ G+ +H                         GC         +  
Sbjct: 335 IVSLLQGCSQTASLATGKILH-------------------------GCAI-------RSF 362

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
             NL++STA+V  YS+ G ++ A  +F++M ++++I W+AM+ G A+N H ++AL+LF +
Sbjct: 363 ESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQ 422

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQ  G+  + VT +S++ +CAHLG L + + IH ++ +  F  D+    A++DMYAKCG 
Sbjct: 423 MQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGK 482

Query: 401 LESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           +  A  +F      ++V+ W SMI  + +HG    A+  ++KM +E + PN  TF+ +L 
Sbjct: 483 INLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLS 542

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           ACSH+ LV++G  +F SM  ++NI P  +HY C+VDL  RA    EA  L+E MPF P  
Sbjct: 543 ACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGT 602

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
            +  +L++ CR H  I L    + +LL LD  + G  ++LSNIYA+ +RW  V  +R  M
Sbjct: 603 AVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLM 662

Query: 580 KERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
           + RG+ K    S +E  N V+ F   D SH   ++IY  L  + S ++ +GYVPD    L
Sbjct: 663 RNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVPDTSCVL 722

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
            D+++E K  ++  HSE+LA+ +GL+++   S IRI KNLRVC DCH   K +SK+  RE
Sbjct: 723 RDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRVCGDCHTVTKYISKIVKRE 782

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           I++RD  RFHH+ +G CSC DYW
Sbjct: 783 IIVRDANRFHHFSNGECSCGDYW 805



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 184/397 (46%), Gaps = 36/397 (9%)

Query: 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
           +D FV T LV  Y     +  AR +FD+      +  + M+ GY Q+G + E L LF  M
Sbjct: 62  TDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLM 121

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
           +  N+E D    +  L AC+ + +   G                               M
Sbjct: 122 RSRNLEVDSCSCTFALKACASSLDYEMG-------------------------------M 150

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
           ++     +K + KN  V ++M+S   + G++ +A+ +FD M  KD++CW+++I GY +  
Sbjct: 151 EIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAG 210

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389
               A +LF EM   G+KP  +TM S+I AC  +G L   + +H Y+     G D+ V  
Sbjct: 211 CFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLT 270

Query: 390 AIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449
           + +DMY+K G +ESAR VF +M  RN++SW +MI+    +G    +   F+++   S   
Sbjct: 271 SFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGF 330

Query: 450 NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
           +  T + +L  CS    +  G+ +       +           +VDL+ +   L++A  +
Sbjct: 331 DLTTIVSLLQGCSQTASLATGKILHGCAIRSFE--SNLILSTAIVDLYSKCGSLKQATFV 388

Query: 510 VETMPFAPNVVIWGSLMA--ACRVHGEIELAEFAAKQ 544
              M    NV+ W +++   A   H E  L  FA  Q
Sbjct: 389 FNRMK-DRNVITWTAMLVGLAQNGHAEDALRLFAQMQ 424



 Score = 44.3 bits (103), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 2/166 (1%)

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H  I  N+   D  V   ++  Y+   SLE+AR VF++  +   +   +M+  +   G  
Sbjct: 52  HAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRY 111

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
           R  L  F  M+  +++ +  +    L AC+ +   + G EI +S   E  +         
Sbjct: 112 RETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAV-EKGMEKNRFVGSS 170

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
           M+    +   + EA  + + MP   +VV W S++      G  ++A
Sbjct: 171 MISFLVKFGKIGEAQRVFDGMP-NKDVVCWNSIIGGYVQAGCFDVA 215


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/721 (35%), Positives = 394/721 (54%), Gaps = 50/721 (6%)

Query: 13  LPTSTAISSCSSLTHMKQTHAQILKLSH----SHHSQNSLLLKLLLTSFSLPTTTPSSLY 68
           +P+ST +S+   L + K     +L  +H      H  N      L+ +++      S ++
Sbjct: 39  IPSSTYLSNHFILLYSK---CNLLTTAHHAFNQTHEPNVFSFNALIAAYA----KESLIH 91

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
            A  +F QIP P     N  I A +       AL +F +M   GL +D F+F  ++ A  
Sbjct: 92  VAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACC 151

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS--YRDIVPW 186
              GL+   Q+H L    GF S   V+  L+  Y   G + +A ++F+ M    RD V W
Sbjct: 152 NHVGLIR--QLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSW 209

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + MI  Y Q+    + L L+ +M     E D   L+ +L+  S   +LS G   H   I 
Sbjct: 210 NSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIK 269

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
                + H+ S LI MYA CG                             AG  E +R +
Sbjct: 270 TGFNKNRHVGSGLIDMYAKCG-----------------------------AGMSE-SRKV 299

Query: 307 FDQMVEKDLICWSAMISGYAENNH-PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           F+++   DL+ W+ MISGY++N     EAL+ F +MQ  G  PD  + +  ISAC++L  
Sbjct: 300 FEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSS 359

Query: 366 LDQAQRIHLYIDKNAF-GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
             Q ++ H    K+      + VNNA++ MY+KCG+L+ AR++F+RM + N ++  S+I 
Sbjct: 360 PSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIA 419

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
            +A HG    +L  F +M   SI P  +T + +L AC+H G V+EG++ F  M + + I 
Sbjct: 420 GYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIE 479

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P+ EHY CM+DL GRA  L EA  L++TMPF+P    W +L+ ACR +G +ELAE AA Q
Sbjct: 480 PEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQ 539

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
            LQL+P +    ++L+++Y+  ++W++   +RK M++RGI K+  CS IE+N  V+ F+ 
Sbjct: 540 FLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVA 599

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV--DLEDEEKREVIL-WHSEKLALC 661
            D SH +  +I+  L+E+  ++K AGYVPD+  A V  D   E+++E++L  HSEKLA+ 
Sbjct: 600 EDNSHPRIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVA 659

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           +GL+ +K    + +VKNLR+C DCHN IK +S +  R+I +RD  RFH ++DG CSC DY
Sbjct: 660 FGLLFTKHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDY 719

Query: 722 W 722
           W
Sbjct: 720 W 720



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 156/321 (48%), Gaps = 13/321 (4%)

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
           +IL +C    +L  G+++H   + + +    +L +  I +Y+ C  +  A   F++    
Sbjct: 13  QILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEP 72

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           N+    A+++ Y++   +  A  +FDQ+ + DL+ ++ +I+ YA+      AL LF EM+
Sbjct: 73  NVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMR 132

Query: 343 VCGMKPDKVTMLSVISACA-HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
             G+  D  T   VI+AC  H+G++ Q   +H     + F   + V N+++  Y+K G L
Sbjct: 133 EMGLVMDGFTFSGVITACCNHVGLIRQ---LHSLAFSSGFDSYVSVKNSLLTYYSKNGIL 189

Query: 402 ESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           E A  VF  M    R+ +SW SMI A+  H     AL  +  M     + +  T   VL 
Sbjct: 190 EEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLT 249

Query: 460 ACSHAGLVDEGREIFA-SMTNEYNIPPKYEHYGC-MVDLFGRANL-LREALELVETMPFA 516
             S    +  G +  A ++   +N   K  H G  ++D++ +    + E+ ++ E +   
Sbjct: 250 TFSCVEDLSGGLQFHAKAIKTGFN---KNRHVGSGLIDMYAKCGAGMSESRKVFEEIC-G 305

Query: 517 PNVVIWGSLMAACRVHGEIEL 537
            ++V+W ++++    + E+ +
Sbjct: 306 SDLVVWNTMISGYSQNKELSV 326


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/683 (36%), Positives = 381/683 (55%), Gaps = 42/683 (6%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKM----------LNEGLTIDRFS 119
           A + F  +P   +   N  +     +  P  AL +F +M          L  GL++ R +
Sbjct: 36  ARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQT 95

Query: 120 FP---------PILKAIARAEGLLEGMQVHGL---GTKLGFGSDP----FVQTGLVGMYG 163
            P         P   ++     LL G   HGL     +L F   P       T L+G   
Sbjct: 96  LPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRL-FQQMPERNHVSYTVLLGGLL 154

Query: 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSK 223
             G++ +AR +FD+M  RD+V W+ M+ GY Q G   E   LF+EM   NV    +  + 
Sbjct: 155 DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTA 210

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           ++S  ++ G ++    + E + + N        + ++  Y   G ++ A  LF+ +    
Sbjct: 211 MISGYAQNGEVNLARKLFEVMPERNEVS----WTAMLVGYIQAGHVEDAAELFNAMPEHP 266

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           +    AM+ G+ + G V+ A+ +F++M E+D   WSAMI  Y +N    EAL  F EM  
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
            G++P+  +++S+++ CA L VLD  + +H  + + +F  D+   +A+I MY KCG+L+ 
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDK 386

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
           A+ VF     ++++ W SMI  +A HG    AL  F+ M+   + P+G+T+IG L ACS+
Sbjct: 387 AKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSY 446

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
            G V EGREIF SMT   +I P  EHY CMVDL GR+ L+ EA +L++ MP  P+ VIWG
Sbjct: 447 TGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWG 506

Query: 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
           +LM ACR+H   E+AE AAK+LL+L+P + G  VLLS+IY    RW+D  ++RK +  R 
Sbjct: 507 ALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRN 566

Query: 584 ILKERACSRIEMNNEVYEFLTAD----RSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
           + K   CS IE +  V+ F + D      H    +I EKL+ ++ E   +GY  D    L
Sbjct: 567 LNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLME---SGYSADGSFVL 623

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
            D+++E+K   + +HSE+ A+ YGL+   +   IR++KNLRVC DCH+ IKL++K+ +RE
Sbjct: 624 HDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSRE 683

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           IV+RD  RFHH+KDG CSC+DYW
Sbjct: 684 IVLRDANRFHHFKDGFCSCRDYW 706



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 210/427 (49%), Gaps = 44/427 (10%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS--- 222
           G I  AR  F+ M  R    ++ ++ GYF+N L D  L LF  M   ++     ++S   
Sbjct: 31  GNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLS 90

Query: 223 ----KILSACSRAGNLSYGEAVHEFI------IDNNVALDA-----------HLQST-LI 260
                +  A +   ++ +  +V  F       + + +  DA           H+  T L+
Sbjct: 91  LRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLL 150

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
               + G ++ A+ LFD++  +++V  TAM+SGY +AG++ +AR +FD+M +++++ W+A
Sbjct: 151 GGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTA 210

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           MISGYA+N     A KLF  M     + ++V+  +++      G ++ A  +   + ++ 
Sbjct: 211 MISGYAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHP 266

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
                   NA++  + + G +++A+ VFE+MR R+  +W++MI A+  +     AL  F 
Sbjct: 267 VAA----CNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFR 322

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN-EYNIPPKYEHYGCMVDLFGR 499
           +M    + PN  + I +L  C+   ++D GRE+ A+M    +++         ++ ++ +
Sbjct: 323 EMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDM--DVFAVSALITMYIK 380

Query: 500 ANLLREALELVETMPFAP-NVVIWGSLMAACRVH--GEIELAEFAAKQLLQLDPD---HD 553
              L +A  +  T  F P ++V+W S++     H  GE  L  F   +L  + PD   + 
Sbjct: 381 CGNLDKAKRVFHT--FEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYI 438

Query: 554 GALVLLS 560
           GAL   S
Sbjct: 439 GALTACS 445



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 128/286 (44%), Gaps = 48/286 (16%)

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL-IFDQMVEKDLICW 318
           I   A  G ++ A+  F+ + L+      A+++GY R  ++ DA L +F +M  +DL  +
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFR-NRLPDAALGLFRRMPSRDLASY 82

Query: 319 SAMISGYA--ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
           +A+ISG +      P  A  L +        P  V+  S++      G+L  A R+   +
Sbjct: 83  NALISGLSLRRQTLPDAAAALAS----IPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM 138

Query: 377 DKNA-------FGGDL---RVN-----------------NAIIDMYAKCGSLESAREVFE 409
            +          GG L   RVN                  A++  Y + G +  AR +F+
Sbjct: 139 PERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFD 198

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            M +RNV+SWT+MI+ +A +G+   A   F  M +     N V++  +L     AG V++
Sbjct: 199 EMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVED 254

Query: 470 GREIFASMTNEYNIPPKYEHYGC--MVDLFGRANLLREALELVETM 513
             E+F +M       P++    C  M+  FG+  ++  A  + E M
Sbjct: 255 AAELFNAM-------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKM 293


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/594 (37%), Positives = 355/594 (59%), Gaps = 10/594 (1%)

Query: 139 VHGLGTKLGFGSDPFVQTGLVGM---------YGACGKILDARLMFDKMSYRDIVPWSVM 189
           +HG   +    SD FV + L+ +         +     +  A  +F ++   ++  ++V+
Sbjct: 31  IHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQIQNPNLFVFNVL 90

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I  +       +    + +M  S + PD +    ++ A +    +  GE  H  I+    
Sbjct: 91  IRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFGF 150

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             D +++++L+ MYANCG +  A  +F ++  +++V  T+MV+GY + G VEDAR +FD+
Sbjct: 151 QNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDE 210

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M  ++L  WS MI+GYA+NN  ++A+ LF  M+  G+  ++  M+SVIS+CAHLG L+  
Sbjct: 211 MPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFG 270

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           +R H Y+ K+    +L +  A++DMY +CG +E A  VFE +  ++ +SW+S+I   A+H
Sbjct: 271 ERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVH 330

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G A  A+ +F++M      P  +T   VL ACSH GLVD+G EI+ +M  +Y I P+ EH
Sbjct: 331 GHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEH 390

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           YGC+VD+ GRA  L EA   +  MP  PN  I G+L+ AC+++   E+AE     L+++ 
Sbjct: 391 YGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVK 450

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF-LTADRS 608
           P+H G  VLLSNIYA   +W+ +  LR  MKE+ + K    S IE++ ++ +F +  D+ 
Sbjct: 451 PEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSMGDDQK 510

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
           H +  +I     E++ +++  GY  +   A  D+++EEK   I  HSEKLA+ YG++ +K
Sbjct: 511 HPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKETAIHMHSEKLAIAYGMMKTK 570

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             + IRIVKNLRVCEDCH   KL+S+VY RE ++RDR RFHH+++G+CSC+DYW
Sbjct: 571 TGTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFHHFRNGLCSCRDYW 624



 Score =  199 bits (507), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 213/449 (47%), Gaps = 73/449 (16%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILK---LSHSHHSQNSLLLKLLL--T 55
           MS +   T     P    + SCSS + +K  H  +L+   +S    +   L L L +  +
Sbjct: 1   MSNIVLNTLRFKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDS 60

Query: 56  SFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI 115
           +F  PT     L YA  IFSQI  P   V N  IR  S    P  A   + +ML   +  
Sbjct: 61  TFHKPTNL---LGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWP 117

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL------ 169
           D  +FP ++KA    E ++ G Q H    + GF +D +V+  LV MY  CG I       
Sbjct: 118 DNITFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIF 177

Query: 170 -------------------------DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
                                    DAR MFD+M +R++  WS+MI+GY +N  F++ ++
Sbjct: 178 GQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAID 237

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           LFE MK   V  +E V+  ++S+C+  G L +GE  HE+++ +++ ++  L + L+ MY 
Sbjct: 238 LFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYW 297

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
            C                               G++E A  +F+++ +KD + WS++I G
Sbjct: 298 RC-------------------------------GEIEKAIRVFEELPDKDSLSWSSIIKG 326

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
            A + H  +A+  F++M   G  P  +T+ +V+SAC+H G++D+   I+  + ++ +G +
Sbjct: 327 LAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRD-YGIE 385

Query: 385 LRVNN--AIIDMYAKCGSLESAREVFERM 411
            R+ +   I+DM  + G L  A     +M
Sbjct: 386 PRLEHYGCIVDMLGRAGKLAEAENFILKM 414


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/604 (37%), Positives = 349/604 (57%), Gaps = 32/604 (5%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +  +L++   +  L  G Q+HG     G G D  + T LV +Y ACG +  AR +FD M 
Sbjct: 65  YTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMP 124

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            R++  W+V+I  Y ++G  +  + L+  M    VEPD       L AC+   +L  G  
Sbjct: 125 KRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGRE 184

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           VHE ++  +   D  + + L+ MYA CGC                               
Sbjct: 185 VHERVLGTHWGEDMFVCAGLVDMYAKCGC------------------------------- 213

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           V+DAR +FD++  +D + W++MI+ Y +N  P EAL L  +M   G+ P   T++S ISA
Sbjct: 214 VDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISA 273

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
            A    L + + +H +  +  F    ++  +++DMYAK G ++ AR +FE++ +R ++SW
Sbjct: 274 AADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSW 333

Query: 420 TSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
            +MI  + +HG    AL  FNKM+ E+ + P+ +TF+GVL AC+H G+V E +E F  M 
Sbjct: 334 NAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMV 393

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
           + Y+I P  +H+ C+VD+ G A    EA +L++ MP  P+  IWG+L+  C++H  +EL 
Sbjct: 394 DVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELG 453

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
           E A ++L++L+P+  G  VLLSNIYA+  +W+    +RK M  RG+ K   CS IE+  +
Sbjct: 454 ELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGK 513

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
            + FL  D SH ++ +IYE+L  +   +  AGY+PD      D+ D+EKR ++  HSE+L
Sbjct: 514 THGFLVGDASHPRSAEIYEELERLEGLMSDAGYMPDTMPVFHDVGDDEKRNMMRSHSERL 573

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+ +GLIS+   + + + KNLRVCEDCH  IKL+S++  REI+IRD  R+HH+ +G CSC
Sbjct: 574 AIAFGLISTPSGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSC 633

Query: 719 KDYW 722
           KDYW
Sbjct: 634 KDYW 637



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 196/417 (47%), Gaps = 41/417 (9%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           +A  +F  +P     + N  IRA +     + A++++  M++ G+  D F++P  LKA A
Sbjct: 115 HARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACA 174

Query: 129 RAEGLLEGMQVHG--LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
               L  G +VH   LGT   +G D FV  GLV MY  CG + DAR +FD++  RD V W
Sbjct: 175 ALLDLETGREVHERVLGTH--WGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVW 232

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + MI  Y QNG   E L+L  +M  + V P    L   +SA + A  L  G  +H F   
Sbjct: 233 NSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWR 292

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
                   L+++L+ MYA  G + +A+ LF++++ + LV   AM+ GY   G        
Sbjct: 293 RGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHG-------- 344

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPDKVTMLSVISACAHLGV 365
                                  H  EALKLFN+M+V   + PD +T + V+SAC H G+
Sbjct: 345 -----------------------HFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGM 381

Query: 366 LDQAQRIH-LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMI 423
           + +A+    L +D  +    ++    ++D+    G  E A ++ + M  + +   W +++
Sbjct: 382 VKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALL 441

Query: 424 NAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           N   IH +     +   K+ + E  D      +  +YA   +G  ++   +   MTN
Sbjct: 442 NGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYA--QSGKWEKAARVRKLMTN 496


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/632 (38%), Positives = 373/632 (59%), Gaps = 16/632 (2%)

Query: 1   MSTLSQPTKP---------LTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLK 51
           +ST S P KP         ++ PT   + SCSS+  +KQ  A I          N +   
Sbjct: 32  LSTSSSPGKPKWNSLSNVFISNPTLLILQSCSSMFQLKQIQAHITCTG----LMNQIFPA 87

Query: 52  LLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE 111
             L +F    +    ++YA  IF Q   P     N  I+    ++ P      F +M+  
Sbjct: 88  SRLLAFC-ALSDSGDIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRN 146

Query: 112 GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA 171
               D  SF   LKA  +    + GM VH +  K GF SD FVQ GL+  Y   G +  A
Sbjct: 147 RAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFA 206

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
           R MFD+ S +D+V W+ MI+GY +N   DE + LF  M  S+V+P+E+ +  +LSACS+ 
Sbjct: 207 RQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQK 266

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
           G+   G+ +HE I   ++    +L + ++ MY  CGC+  A+ +F+ +  +++   T+++
Sbjct: 267 GDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLL 326

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDK 350
           +GY++ G +  AR +FD+M E++++ W+AMI+GY++N+ P EAL+LF+ M  V G+ P +
Sbjct: 327 NGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTE 386

Query: 351 VTMLSVISACAHLGVLDQAQRIHL-YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
            T++ V+SA   LG L+  Q IH  +++K      L + NA++DMYAKCGS+++A ++F 
Sbjct: 387 DTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFH 446

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            M  +N++SW SMI+A+A +G A+ AL  F++M    + P+ +TFIGVL ACS+ G V E
Sbjct: 447 SMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSE 506

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G+  F SM N + + PK EHY CMVDL  R  LL+EA EL+  MP   +   WG+L+ AC
Sbjct: 507 GQAHFESMENCFGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDAC 566

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
           R HG +E+A+ A ++LL+LDP+  G   LL+NI A  K+W+DV  +R+ M+ERG+ K   
Sbjct: 567 RKHGNVEMAKLAGEKLLELDPEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPG 626

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNE 621
            S IE+  + +EFL AD SH ++ +IY  +NE
Sbjct: 627 HSLIEIEGKFHEFLVADTSHTRSSEIYRVVNE 658


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/603 (36%), Positives = 343/603 (56%), Gaps = 32/603 (5%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +  ++ A AR   L +   +H       F    F+   L+ +Y  CG + DAR +FD M 
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            RD+  W+ +I GY QN + DE L L   M     +P+    + +L A   + +   GE 
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H   +  +   D ++ S L+ MYA                               R G+
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYA-------------------------------RCGR 215

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           ++ A  +FDQ+  K+ + W+A+I+G+A     +  L +F EMQ  G +    T  SV SA
Sbjct: 216 MDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSA 275

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
            A +G L+Q + +H ++ K+       V N I+DMYAK GS+  AR+VF+R+ +++V++W
Sbjct: 276 IAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTW 335

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            SM+ AFA +G  R A+  F +M+   +  N +TF+ +L ACSH GLV EG++ F  M  
Sbjct: 336 NSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF-DMMK 394

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
           EYN+ P+ +HY  +VDL GRA LL +AL  +  MP  P   +WG+L+ +CR+H   ++ +
Sbjct: 395 EYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQ 454

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
           FAA  + +LDPD  G  VLL NIYA   +W     +RK MK  G+ KE ACS +E+ N V
Sbjct: 455 FAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSV 514

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
           + F+  D +H ++++IY+K  E+  +++ AGYVP+    L+ ++++E++  + +HSEK+A
Sbjct: 515 HMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIA 574

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           L + LI+    + IRI+KN+R+C DCH+  + +SKV+ REIV+RD  RFHH+  G CSC 
Sbjct: 575 LAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCG 634

Query: 720 DYW 722
           DYW
Sbjct: 635 DYW 637



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 170/365 (46%), Gaps = 32/365 (8%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F  +PA         I   + +  P  AL +   ML      + F+F  +LKA   
Sbjct: 118 ARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGA 177

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           +     G Q+H L  K  +  D +V + L+ MY  CG++  A  +FD++  ++ V W+ +
Sbjct: 178 SASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNAL 237

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G+ + G  +  L +F EM+ +  E      S + SA +  G L  G+ VH  +I +  
Sbjct: 238 IAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGE 297

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            L A + +T++ MYA  G M  A+ +FD+V  K++V   +M++ +++ G           
Sbjct: 298 RLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGL---------- 347

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                                 +EA+  F EM+ CG+  +++T LS+++AC+H G++ + 
Sbjct: 348 ---------------------GREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEG 386

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE-VFERMRRRNVISWTSMINAFAI 428
           ++    + +     ++     ++D+  + G L  A   +F+   +     W +++ +  +
Sbjct: 387 KQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRM 446

Query: 429 HGDAR 433
           H +A+
Sbjct: 447 HKNAK 451


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/606 (37%), Positives = 359/606 (59%), Gaps = 10/606 (1%)

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L+  AR   L     +H    KLG      +   LV +YG CG    A  +FD+M +RD 
Sbjct: 10  LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           + W+ ++    Q  L  + L++F  +  S+ + PD+ V S ++ AC+  G++ +G  VH 
Sbjct: 70  IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
             I +  A D  ++S+L+ MYA CG ++ AK +FD + +KN +  TAMVSGY+++G+ E+
Sbjct: 130 HFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEE 189

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP-DKVTMLSVISACA 361
           A  +F  +  K+L  W+A+ISG+ ++    EA  +F EM+   +   D + + S++ ACA
Sbjct: 190 ALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACA 249

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
           +L      +++H  +    F   + ++NA+IDMYAKC  + +A+++F RMR R+V+SWTS
Sbjct: 250 NLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTS 309

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           +I   A HG A  AL  ++ M    + PN VTF+G++YACSH G V++GRE+F SMT +Y
Sbjct: 310 LIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDY 369

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE----IEL 537
            I P  +HY C++DL GR+ LL EA  L+ TMPF P+   W +L++AC+  G     I +
Sbjct: 370 GIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRI 429

Query: 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNN 597
           A+         DP      +LLSNIYA    W  V E R+ + E  + K+   S +E+  
Sbjct: 430 ADHLVSSFKLKDPS---TYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRK 486

Query: 598 EVYEFLTADRSHKQTDQIYEKLNEVISELK-PAGYVPDIHSALVDLEDEEKREVILWHSE 656
           E   F   + SH   + I+  L ++  E++   GYVPD    L D++++EK +++ WHSE
Sbjct: 487 ETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSE 546

Query: 657 KLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVC 716
           + A+ YGL+ +   + IRIVKNLRVC DCH  +K +S++  REI++RD TR+HH+K G C
Sbjct: 547 RSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKC 606

Query: 717 SCKDYW 722
           SC D+W
Sbjct: 607 SCNDFW 612



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 125/284 (44%), Gaps = 10/284 (3%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIA 128
           AL +F  +P          I     S +   A  VF +M  E + I D      I+ A A
Sbjct: 190 ALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACA 249

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
                + G QVHGL   LGF S  F+   L+ MY  C  ++ A+ +F +M +RD+V W+ 
Sbjct: 250 NLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTS 309

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDN 247
           +I G  Q+G  ++ L L+++M    V+P+E+    ++ ACS  G +  G E       D 
Sbjct: 310 LIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDY 369

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKV-LLKNLVVSTAMVSGYSRAGQVEDARLI 306
            +       + L+ +    G +D A+ L   +    +     A++S   R G+ +    I
Sbjct: 370 GIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRI 429

Query: 307 FDQMVE----KDLICWSAMISGYAENN---HPQEALKLFNEMQV 343
            D +V     KD   +  + + YA  +      EA +   EM+V
Sbjct: 430 ADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEV 473



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 88/187 (47%), Gaps = 5/187 (2%)

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
           L  +  CA    L  A+ +H +I K        + N ++++Y KCG+   A +VF+ M  
Sbjct: 7   LHQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPH 66

Query: 414 RNVISWTSMINAF-AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
           R+ I+W S++ A    +   +   +F +      + P+   F  ++ AC++ G +D GR+
Sbjct: 67  RDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQ 126

Query: 473 IFAS-MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
           +    + +EY      +    +VD++ +  LL  A  + +++    N + W ++++    
Sbjct: 127 VHCHFIVSEYANDEVVK--SSLVDMYAKCGLLNSAKAVFDSIR-VKNTISWTAMVSGYAK 183

Query: 532 HGEIELA 538
            G  E A
Sbjct: 184 SGRKEEA 190


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/640 (37%), Positives = 365/640 (57%), Gaps = 43/640 (6%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           ++F R       P+ A+K    + + GL  D  ++  ++K       + EG   + +   
Sbjct: 31  SEFTRLCYQRDLPR-AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEG---NLICRH 86

Query: 146 LGF-GSDP--FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202
           L F G  P  F+   L+ MY     + DA  +FD+M  R+++ W+ MI  Y +  +  + 
Sbjct: 87  LYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKA 146

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           L L   M   NV P+    S +L +C+    +S    +H  II   +  D  ++S LI +
Sbjct: 147 LELLVLMLRDNVRPNVYTYSSVLRSCN---GMSDVRMLHCGIIKEGLESDVFVRSALIDV 203

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           +A                               + G+ EDA  +FD+MV  D I W+++I
Sbjct: 204 FA-------------------------------KLGEPEDALSVFDEMVTGDAIVWNSII 232

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
            G+A+N+    AL+LF  M+  G   ++ T+ SV+ AC  L +L+   + H++I K  + 
Sbjct: 233 GGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YD 290

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            DL +NNA++DMY KCGSLE A  VF +M+ R+VI+W++MI+  A +G ++ AL  F +M
Sbjct: 291 QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERM 350

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
           K     PN +T +GVL+ACSHAGL+++G   F SM   Y I P  EHYGCM+DL G+A  
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGK 410

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
           L +A++L+  M   P+ V W +L+ ACRV   + LAE+AAK+++ LDP+  G   LLSNI
Sbjct: 411 LDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNI 470

Query: 563 YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
           YA  ++W  V E+R  M++RGI KE  CS IE+N +++ F+  D SH Q  ++ +KLN++
Sbjct: 471 YANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQL 530

Query: 623 ISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVC 682
           I  L   GYVP+ +  L DLE E+  + +  HSEKLAL +GL++   +  IRI KNLR+C
Sbjct: 531 IHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRIC 590

Query: 683 EDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            DCH F KL SK+  R IVIR   R+HH++DG CSC DYW
Sbjct: 591 GDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 9/234 (3%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTT 63
           L    +P     S+ + SC+ ++ ++  H  I+K       ++ + ++  L         
Sbjct: 154 LRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIK----EGLESDVFVRSALIDVFAKLGE 209

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
           P     ALS+F ++    + V N  I   + + R   AL++F +M   G   ++ +   +
Sbjct: 210 PED---ALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSV 266

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L+A      L  GMQ H    K  +  D  +   LV MY  CG + DA  +F++M  RD+
Sbjct: 267 LRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDV 324

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           + WS MI G  QNG   E L LFE MK S  +P+ + +  +L ACS AG L  G
Sbjct: 325 ITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG 378


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/610 (36%), Positives = 349/610 (57%), Gaps = 37/610 (6%)

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +F  ++ +      L +G+ VH      G   DP++ T L+ MY   G +  A  +FD+ 
Sbjct: 76  TFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDET 135

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA----GNL 234
             + I  W+ +          +++L L+ +M    +  +    + +L AC  +      L
Sbjct: 136 REKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPL 195

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             G+ +H  I+ +      H+ +TL+ +YA                              
Sbjct: 196 RKGKEIHAHILRHGYEGHVHVMTTLLDVYA------------------------------ 225

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM--QVCGMKPDKVT 352
            R G V  A  +F  M +K+++ WSAMI+ YA+N  P +AL+LF  M  + C   P+ +T
Sbjct: 226 -RFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPIT 284

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           M+SV+ ACA L  L+  + +H Y+ +      L V N +I MY +CG + + + VF+ M+
Sbjct: 285 MVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMK 344

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
           +R+VISW S+I+ + +HG  + A+  F  M +  + P+ +TFI VL ACSHAGLV+E + 
Sbjct: 345 KRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKI 404

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
           +F SM N+Y I P+ EHY CMVD+ GRAN L EA+EL++ M F P   +WGSL+ +CR+H
Sbjct: 405 LFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIH 464

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
             +ELAE A+  L +L+P + G  VLLS+IYAK + W DV  +RK ++ RG+ K  +CS 
Sbjct: 465 CNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSW 524

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652
           IE+  ++Y  ++ +  + Q +++   L  +++E+K  GYVP  +    DL++EEK  ++L
Sbjct: 525 IEVKRKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYDLDEEEKERIVL 584

Query: 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712
            HS KLA+ +GLI++ K   IRI  NLR+CEDCH F+K VSK   REI++RD  RFH +K
Sbjct: 585 GHSGKLAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFTNREILLRDVNRFHCFK 644

Query: 713 DGVCSCKDYW 722
           DGVCSC DYW
Sbjct: 645 DGVCSCGDYW 654



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 178/381 (46%), Gaps = 57/381 (14%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           S+ +A  +F +       V N   RA++ + R +  L ++ +M   G+  +RF++  +LK
Sbjct: 124 SVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLK 183

Query: 126 AIARAE----GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
           A   +E     L +G ++H    + G+     V T L+ +Y   G +  A  +F  M  +
Sbjct: 184 ACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDK 243

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE--PDEMVLSKILSACSRAGNLSYGEA 239
           +IV WS MI  Y +N +  + L LF+ M +   +  P+ + +  +L AC+    L +G+ 
Sbjct: 244 NIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKL 303

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           VH +++   +     + +TLITMY  CG                               +
Sbjct: 304 VHAYVLRRGLDSTLPVLNTLITMYGRCG-------------------------------E 332

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           +   + +FD M ++D+I W+++IS Y  +   ++A+++F  M   G+ P  +T ++V+ A
Sbjct: 333 ISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCA 392

Query: 360 CAHLGVLDQAQ----------RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           C+H G++++A+          RIH  ++  A          ++D+  +   L+ A E+ +
Sbjct: 393 CSHAGLVEEAKILFESMLNKYRIHPRMEHYA---------CMVDILGRANRLDEAIELIQ 443

Query: 410 RMR-RRNVISWTSMINAFAIH 429
            M  +     W S++ +  IH
Sbjct: 444 NMDFKPGPTVWGSLLGSCRIH 464



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 154/338 (45%), Gaps = 41/338 (12%)

Query: 204 NLFEEMKMSNVEPD--EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
           NL + +++   EP+  +     ++++C    +LS G  VH  ++ + +  D +L + LI 
Sbjct: 58  NLKQAVQLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLIN 117

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
           MY + G +D A  +FD+   K + V  A+    + A + ED                   
Sbjct: 118 MYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGED------------------- 158

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC--AHLGV--LDQAQRIHLYID 377
                        L L+ +M   G+  ++ T   V+ AC  + L +  L + + IH +I 
Sbjct: 159 ------------LLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHIL 206

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           ++ + G + V   ++D+YA+ G +  A  VF  M  +N++SW++MI  +A +     AL 
Sbjct: 207 RHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALE 266

Query: 438 FFNKMKDESID--PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
            F  M  E+ D  PN +T + VL AC+    ++ G+ + A +     +         ++ 
Sbjct: 267 LFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRR-GLDSTLPVLNTLIT 325

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           ++GR   +     + + M    +V+ W SL++   +HG
Sbjct: 326 MYGRCGEISTGQRVFDYMK-KRDVISWNSLISIYGMHG 362



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 9/220 (4%)

Query: 29  KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKF 88
           K+ HA IL+  +  H      L  +   F   +       YA S+F  +P       +  
Sbjct: 199 KEIHAHILRHGYEGHVHVMTTLLDVYARFGYVS-------YASSVFGAMPDKNIVSWSAM 251

Query: 89  IRAISWSHRPKHALKVFLKMLNEGLTI--DRFSFPPILKAIARAEGLLEGMQVHGLGTKL 146
           I   + +  P  AL++F  M+ E      +  +   +L+A A    L  G  VH    + 
Sbjct: 252 IACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRR 311

Query: 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLF 206
           G  S   V   L+ MYG CG+I   + +FD M  RD++ W+ +I  Y  +GL  + + +F
Sbjct: 312 GLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIF 371

Query: 207 EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           E M    V P  +    +L ACS AG +   + + E +++
Sbjct: 372 ENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLN 411



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 15/223 (6%)

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
           LK   ++  C   P K T   +I++C     L     +H  +  +    D  +   +I+M
Sbjct: 59  LKQAVQLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINM 118

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y   GS++ A +VF+  R + +  W ++  A A+     + L+ + +M    I  N  T+
Sbjct: 119 YCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTY 178

Query: 455 IGVLYACSHAGL----VDEGREIFASMTNEYNIPPKYEHY----GCMVDLFGRANLLREA 506
             VL AC  + L    + +G+EI A +         YE +      ++D++ R   +  A
Sbjct: 179 TYVLKACVVSELSICPLRKGKEIHAHILRH-----GYEGHVHVMTTLLDVYARFGYVSYA 233

Query: 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
             +   MP   N+V W S M AC    E+ +      Q++ L+
Sbjct: 234 SSVFGAMP-DKNIVSW-SAMIACYAKNEMPMKALELFQIMMLE 274


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/527 (40%), Positives = 347/527 (65%), Gaps = 7/527 (1%)

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           ++++  M+   V PD      +L +     +L  G+  H  I+   +  D  ++++L+ M
Sbjct: 47  ISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNM 106

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           Y++CG +  A+ +FD    K+L    ++V+ Y++AG ++DAR +FD+M E+++I WS +I
Sbjct: 107 YSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLI 166

Query: 323 SGYAENNHPQEALKLFNEMQV-----CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           +GY      +EAL LF EMQ+       ++P++ TM +V+SAC  LG L+Q + +H YID
Sbjct: 167 NGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYID 226

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNAL 436
           K     D+ +  A+IDMYAKCGSLE A+ VF  +  +++V ++++MI   A++G      
Sbjct: 227 KYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECF 286

Query: 437 IFFNKMK-DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
             F++M   ++I+PN VTF+G+L AC H GL++EG+  F  M  E+ I P  +HYGCMVD
Sbjct: 287 QLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVD 346

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555
           L+GR+ L++EA   + +MP  P+V+IWGSL++  R+ G+I+  E A K+L++LDP + GA
Sbjct: 347 LYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGA 406

Query: 556 LVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQI 615
            VLLSN+YAK  RW +V  +R  M+ +GI K   CS +E+   V+EF+  D S +++++I
Sbjct: 407 YVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERI 466

Query: 616 YEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRI 675
           Y  L+E++  L+ AGYV D    L+DL +++K   + +HSEKLA+ + L+ ++  + +RI
Sbjct: 467 YAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRI 526

Query: 676 VKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +KNLR+C DCH  +K++SK+++REIV+RD  RFHH++DG CSC+D+W
Sbjct: 527 IKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 179/391 (45%), Gaps = 72/391 (18%)

Query: 86  NKFIRAI--SWSHRPKHA-LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGL 142
           N  IRAI  + S   +H+ + V+L+M N  ++ D  +FP +L +      L  G + H  
Sbjct: 28  NIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQ 87

Query: 143 GTKLGFGSDPFVQTGLVGMYGACGK-------------------------------ILDA 171
               G   DPFV+T L+ MY +CG                                I DA
Sbjct: 88  ILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDA 147

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-----VEPDEMVLSKILS 226
           R +FD+M  R+++ WS +I+GY   G + E L+LF EM++       V P+E  +S +LS
Sbjct: 148 RKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLS 207

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV 286
           AC R G L  G+ VH +I   +V +D  L + LI MYA CG ++ AK +F+ +  K    
Sbjct: 208 ACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSK---- 263

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC-G 345
                                     KD+  +SAMI   A      E  +LF+EM     
Sbjct: 264 --------------------------KDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDN 297

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
           + P+ VT + ++ AC H G++++ +    + I++      ++    ++D+Y + G ++ A
Sbjct: 298 INPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEA 357

Query: 405 REVFERM-RRRNVISWTSMINAFAIHGDARN 434
                 M    +V+ W S+++   + GD + 
Sbjct: 358 ESFIASMPMEPDVLIWGSLLSGSRMLGDIKT 388


>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
 gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 408

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 204/394 (51%), Positives = 295/394 (74%)

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           MK S V PD+++++ +LS C+   NL +G+A+H +++ ++  +DA +   L+ MYA+C  
Sbjct: 1   MKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCAD 60

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           M+MA+ L+++V  K +V+ST MV GY++ G+VE A  IF+ M  KD++ WSAMI+GYAE+
Sbjct: 61  MEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAES 120

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
           + P EAL LF++MQ  G+KPD++TMLSVISACA++G L++A+ IH +++ ++    L + 
Sbjct: 121 SKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIG 180

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           NA+IDM++KCGSL  A +VF  M ++NV++WTS+I A A+HGD R+AL  F  MK E I 
Sbjct: 181 NALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQ 240

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
           PNGVTF+G+LYAC HAGLV+EGR +F  M  +Y I P +EHYGCMVDL GRA LL +A +
Sbjct: 241 PNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAAD 300

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
           L+++M   PNVVIWGSL+AACR+HG++EL  FAAK++L+LDP+H GA VLLSNIYA+   
Sbjct: 301 LIQSMHLRPNVVIWGSLLAACRMHGDLELGTFAAKKILELDPNHGGAQVLLSNIYAEYGN 360

Query: 569 WQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           W DV E+R  M+ +G  K++ CS +E+N  V++F
Sbjct: 361 WNDVKEVRGVMEVQGTWKKKGCSWMELNGSVHQF 394



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 146/299 (48%), Gaps = 35/299 (11%)

Query: 154 VQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN 213
           + T +V  Y   GK+  A  +F+ M  +D+V WS MI GY ++    E LNLF +M+ S 
Sbjct: 78  LSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSG 137

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           V+PDE+ +  ++SAC+  G L     +H F+ ++++     + + LI M++ CG + +A 
Sbjct: 138 VKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLAL 197

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
            +F+ +  KN+V  T++++  +  G   D R                             
Sbjct: 198 DVFNAMPQKNVVTWTSIITASAMHG---DGR----------------------------S 226

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI-HLYIDKNAFGGDLRVNNAII 392
           AL LF  M+  G++P+ VT L ++ AC H G++++ + +  + + +            ++
Sbjct: 227 ALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMV 286

Query: 393 DMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           D+  +   L  A ++ + M  R NV+ W S++ A  +HGD    L  F   K   +DPN
Sbjct: 287 DLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLE--LGTFAAKKILELDPN 343



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 9/200 (4%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A SIF+ +PA      +  I   + S +P  AL +F  M   G+  D  +   ++ A A 
Sbjct: 95  AHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACAN 154

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L +   +H             +   L+ M+  CG +  A  +F+ M  +++V W+ +
Sbjct: 155 VGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSI 214

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I     +G     L LFE MK   ++P+ +    +L AC  AG +  G  + + ++    
Sbjct: 215 ITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQ--- 271

Query: 250 ALDAHLQSTLITMYANCGCM 269
                 Q  +  M+ + GCM
Sbjct: 272 ------QYRIEPMHEHYGCM 285


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/625 (36%), Positives = 354/625 (56%), Gaps = 53/625 (8%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           +  L ++ +M+  G+ +D  +   +L   A +  L  G  VH L  K  F         L
Sbjct: 233 ERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTL 292

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + MY  CG +  A  +F+KM  R++V W+ MI GY ++G  D  + L ++M+   V+ D 
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDV 352

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           + ++ IL AC+R+G+L  G+ VH++I  NN+                             
Sbjct: 353 VAITSILHACARSGSLDNGKDVHDYIKANNME---------------------------- 384

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
               NL V  A++  Y++ G +E A  +F  MV KD+I W+ MI                
Sbjct: 385 ---SNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGE-------------- 427

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
                  +KPD  TM  V+ ACA L  L++ + IH YI +N +  D  V NA++D+Y KC
Sbjct: 428 -------LKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G L  AR +F+ +  ++++SWT MI  + +HG    A+  FN+M+D  I+P+ V+FI +L
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
           YACSH+GL+++G   F  M N++NI PK EHY CMVDL  R   L +A E +ET+P AP+
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPD 600

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
             IWG+L+  CR + +IELAE  A+++ +L+P++ G  VLL+NIYA+ ++W++V  LR+ 
Sbjct: 601 ATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREK 660

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADR-SHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
           + ++G+ K   CS IE+  +V  F++ +  SH  +  I   L ++  ++K  G+ P    
Sbjct: 661 IGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKY 720

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
           AL++ ++ +K   +  HSEKLA+ +GL++      IR+ KNLRVC DCH   K +SK   
Sbjct: 721 ALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETR 780

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           REIV+RD  RFHH+KDG CSC+ +W
Sbjct: 781 REIVLRDPNRFHHFKDGYCSCRGFW 805



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 181/365 (49%), Gaps = 24/365 (6%)

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +  ++  I  + Q G  +  + L    K S +E      S +L  C+   + + G+ VH 
Sbjct: 66  VTDYNAKILHFCQLGDLENAMELICMCKKSELETK--TYSSVLQLCAGLKSFTDGKKVHS 123

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV-- 300
            I  N+V +D  L   L++ YA CG +   + +FD +  KN+ +   MVS Y++ G    
Sbjct: 124 IIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 301 ------------------EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
                             E A  +FD++ ++D+I W++MISGY  N   +  L ++ +M 
Sbjct: 184 SICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMM 243

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
             G+  D  T++SV+  CA+ G L   + +H    K++F   +  +N ++DMY+KCG L+
Sbjct: 244 YLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLD 303

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            A  VFE+M  RNV+SWTSMI  +   G +  A+    +M+ E +  + V    +L+AC+
Sbjct: 304 GALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACA 363

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
            +G +D G+++   +    N+         ++D++ +   +  A  +  TM    +++ W
Sbjct: 364 RSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYAKCGSMEAANSVFSTM-VVKDIISW 421

Query: 523 GSLMA 527
            +++ 
Sbjct: 422 NTMIG 426



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 157/344 (45%), Gaps = 55/344 (15%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           AL +F ++           I   +   R   A+K+  +M  EG+ +D  +   IL A AR
Sbjct: 305 ALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACAR 364

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           +  L  G  VH         S+ FV   L+ MY  CG +  A  +F  M  +DI+ W+ M
Sbjct: 365 SGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTM 424

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I                       ++PD   ++ +L AC+    L  G+ +H +I+ N  
Sbjct: 425 I---------------------GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGY 463

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
           + D H+ + L+ +Y  CG + +A+ LFD +  K+LV  T M++GY   G           
Sbjct: 464 SSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHG----------- 512

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                               +  EA+  FNEM+  G++PD+V+ +S++ AC+H G+L+Q 
Sbjct: 513 --------------------YGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG 552

Query: 370 QRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERM 411
            R   YI KN F  + ++ +   ++D+ ++ G+L  A E  E +
Sbjct: 553 WRF-FYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETL 595


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/590 (38%), Positives = 342/590 (57%), Gaps = 35/590 (5%)

Query: 138 QVHGLGTKLG-FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
           Q+H L  + G F SDP+  + L+ MY  C + +DAR  FD++   + V  + M  GY +N
Sbjct: 114 QLHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRN 173

Query: 197 GLFDEVLNLFEEMKMSNVEP--DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
            L    L LF  M  S+     DE       SA +R  +     ++H  I       +A 
Sbjct: 174 NLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAG 233

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           + +T++  YA  G  D+                             E AR +FD M E+D
Sbjct: 234 VVNTMLDSYAKGGSRDL-----------------------------EVARKVFDTM-ERD 263

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCG--MKPDKVTMLSVISACAHLGVLDQAQRI 372
           ++ W++MI+ YA+N    EA+ L+++M   G  +K + V + +V+ ACAH G +   +RI
Sbjct: 264 VVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRI 323

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H  + +     ++ V  +I+DMY+KCG +E A   F +++ +N++SW++MI  + +HG  
Sbjct: 324 HNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRG 383

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
           + AL  F +MK   + PN +TFI VL ACSHAGL+DEGR  + +M  E+ I    EHYGC
Sbjct: 384 QEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGC 443

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           MVDL GRA  L EA  L++ M   P+  IWG+L++ACR+H  +ELAE + K+L +LD  +
Sbjct: 444 MVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASN 503

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
            G  VLLSNIYA+ + W+DV  +R  +K R I K    S  E+  ++Y F   D+SH Q 
Sbjct: 504 SGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQH 563

Query: 613 DQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSC 672
            +IY  L +++  ++ AGYVP+  S L DL++EEK   +  HSEKLA+ + L++S   S 
Sbjct: 564 IEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSV 623

Query: 673 IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           I I+KNLRVC DCH  +K ++K+  REI+IRD  RFHH+KDG+CSC+DYW
Sbjct: 624 IHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 673


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/617 (37%), Positives = 353/617 (57%), Gaps = 58/617 (9%)

Query: 114 TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC---GKILD 170
           T      P ++  I +   L E  Q+     K  + ++  V T  +    +      +  
Sbjct: 20  TTSLLPLPHLISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEH 79

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV--LSKILSAC 228
           A  +FD+++  +IV ++ M  GY +       LN          +P  M+    + L   
Sbjct: 80  AHQLFDQITQPNIVLFNTMARGYAR-------LN----------DPLRMITHFRRCLRLV 122

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
           S+   L+ G+ +H F +   V+ + ++  TLI MY  C                      
Sbjct: 123 SKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTAC---------------------- 160

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
                    G ++ +R +FD++ E  ++ ++A+I   A NN   EAL LF E+Q  G+KP
Sbjct: 161 ---------GDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKP 211

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
             VTML V+S+CA LG LD  + +H Y+ K  F   ++VN  +IDMYAKCGSL+ A  VF
Sbjct: 212 TDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVF 271

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
             M +R+  +W+++I A+A HGD   A+   N+MK E + P+ +TF+G+LYACSH GLV+
Sbjct: 272 RDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVE 331

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           EG E F  MTNEY I P  +HYGCMVDL GRA  L EA + ++ +P  P  ++W +L++A
Sbjct: 332 EGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSA 391

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           C  HG +E+ +   +++ +LD  H G  V+ SN+ A+  +W DV  LRK+M ++G +K  
Sbjct: 392 CSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIP 451

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV---DLEDE 645
            CS IE+NN V+EF   +  H  +  ++  L+E++ ELK AGYVPD  ++LV   D+EDE
Sbjct: 452 GCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAGYVPD--TSLVFYADMEDE 509

Query: 646 EKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDR 705
           EK  ++ +HSEKLA+ +GL+++   + IR+VKNLRVC DCHN  K +S ++ R+I++RD 
Sbjct: 510 EKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDV 569

Query: 706 TRFHHYKDGVCSCKDYW 722
            RFHH+KDG CSC DYW
Sbjct: 570 QRFHHFKDGKCSCGDYW 586



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/483 (24%), Positives = 221/483 (45%), Gaps = 61/483 (12%)

Query: 8   TKPLTLPTS--------TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL 59
           TKP T  TS        + I  C++L  +KQ  A  +K ++    QN+  +     +F  
Sbjct: 14  TKPNTETTSLLPLPHLISLIPKCTTLKELKQIQAYTIKTNY----QNNTNVITKFINFCT 69

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
              T +S+ +A  +F QI  P   + N   R  +  + P       L+M+          
Sbjct: 70  SNPTKASMEHAHQLFDQITQPNIVLFNTMARGYARLNDP-------LRMITH-------- 114

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           F   L+ +++ + L EG Q+H    KLG   + +V   L+ MY ACG I  +R +FDK+ 
Sbjct: 115 FRRCLRLVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKID 174

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
              +V ++ +I    +N   +E L LF E++   ++P ++ +  +LS+C+  G+L  G  
Sbjct: 175 EPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRW 234

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +HE++          + +TLI MYA CG +D                             
Sbjct: 235 MHEYVKKYGFDRYVKVNTTLIDMYAKCGSLD----------------------------- 265

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
             DA  +F  M ++D   WSA+I  YA +    +A+ + NEM+   ++PD++T L ++ A
Sbjct: 266 --DAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYA 323

Query: 360 CAHLGVLDQA-QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVI 417
           C+H G++++  +  H   ++      ++    ++D+  + G L+ A +  + +  +   I
Sbjct: 324 CSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPI 383

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
            W ++++A + HG+         ++  E  D +G  ++     C+  G  D+   +  +M
Sbjct: 384 LWRTLLSACSTHGNVEMGKRVIERIF-ELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTM 442

Query: 478 TNE 480
            ++
Sbjct: 443 IDK 445


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/519 (41%), Positives = 314/519 (60%), Gaps = 30/519 (5%)

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            F  M    V P++     +L AC+   G+   G   H   +    A D ++ +TLI MY
Sbjct: 113 FFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMY 172

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
           +  G                              G + DAR +FD+M ++  + WSAMI 
Sbjct: 173 SCFG-----------------------------GGFLGDARNVFDRMPKESAVTWSAMIG 203

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           GY       +A++LF EMQ  G++ D+VT++ V++A   LG L+ A+ +  ++++   G 
Sbjct: 204 GYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGK 263

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
            + + NA+ID  AKCG ++ A  VFE M++R+V+SWTS+I+A A+ G  + A+  F +MK
Sbjct: 264 SVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMK 323

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
              + P+ V FIGVL ACSHAG+VDEG   F +M  EY I PK EHYGCMVD+FGRA ++
Sbjct: 324 VAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMV 383

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563
             A+E V TMP  PN VIW SL++ACR HG +EL E   + LL   P H+   ++LSN++
Sbjct: 384 ERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVF 443

Query: 564 AKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVI 623
           A  +RW++  E+R+ M +RGI K   CS +E++ EV+EF+  D SH Q   IY  + E+ 
Sbjct: 444 ALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMA 503

Query: 624 SELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCE 683
            EL+  G++      L+DL++E+K   + WHSEKLA+ + L+ +   + +R+VKNLRVC 
Sbjct: 504 RELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCS 563

Query: 684 DCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           DCH  IK +S+VY REIV+RDR+RFH +KDG CSCKD+W
Sbjct: 564 DCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 215/451 (47%), Gaps = 66/451 (14%)

Query: 4   LSQPTKPLTLPTSTA---------ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLL 54
           +S P+ P   P++           +++ S+ T + Q+ A +LK   S    NSL+L  L 
Sbjct: 5   VSSPSAPRLSPSAARAAEQHCLRLLAASSTPTSLLQSVAFLLK---SGLHANSLVLTRL- 60

Query: 55  TSFSLPTTTPSSLYYALSIFSQIPAPP--SRVSNKFIRAISWSHRPKHALKV-----FLK 107
             F+   +   +L   L      P+ P  + ++N  IRA + S  P H+L++     F  
Sbjct: 61  --FAASASAAPALLDPLVAALLRPSVPLDAFLANTLIRAHATS--PIHSLRLRAAAFFPL 116

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACG 166
           ML   +  ++F+FP +LKA A   G  + G+Q H    K GF +D +V   L+ MY   G
Sbjct: 117 MLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFG 176

Query: 167 K--ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
              + DAR +FD+M     V WS MI GY + GL  + + LF EM+ + V+ DE+ +  +
Sbjct: 177 GGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGV 236

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L+A +  G L     V  F+    +     L + LI   A CG +D A  +F+ +  +++
Sbjct: 237 LAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSV 296

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
           V  T+++   +  G+                                +EA+++F EM+V 
Sbjct: 297 VSWTSVIDALAMEGR-------------------------------GKEAVRVFEEMKVA 325

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYID--KNAFGGDLRVNN--AIIDMYAKCGS 400
           G+ PD V  + V++AC+H G++D+      Y D  K  +G + ++ +   ++DM+ + G 
Sbjct: 326 GVPPDDVAFIGVLTACSHAGMVDEGCG---YFDAMKVEYGIEPKIEHYGCMVDMFGRAGM 382

Query: 401 LESAREVFERMR-RRNVISWTSMINAFAIHG 430
           +E A E    M  + N + W S+++A   HG
Sbjct: 383 VERAMEFVRTMPIQPNPVIWRSLVSACRAHG 413


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/568 (39%), Positives = 349/568 (61%), Gaps = 14/568 (2%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L GM    GK+ +A+ +F K+   D V ++ M+  Y +N   +     FE+M + +    
Sbjct: 13  LAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSW 72

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFII---DNNVALDAHLQSTLITMYANCGCMDMAKG 274
             +++        A N    +A   F+I    N V  +A     +I+ Y  CG +D A  
Sbjct: 73  NTMITGF------AQNQQMDKARDLFLIMPTKNVVTWNA-----MISGYVECGDLDSALK 121

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
           LF+K   K++V  TAM++GY + G++  A  +F++M EK+L+ W+AMI+GY EN+  ++ 
Sbjct: 122 LFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDG 181

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
           +KLF  M   G++P+  T+ S +  C+ L  L   +++H  + K+    D     ++I M
Sbjct: 182 VKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISM 241

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y KCG LE   ++F ++ RR+V++W +MI+ +A HG+ + AL  F++M ++ + P+ +TF
Sbjct: 242 YCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITF 301

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           + VL AC+HAG  D G + F SM  +Y +  K +HY CMVDL GRA  L EA++L+E MP
Sbjct: 302 VAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMP 361

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
           F P+  ++G+L+ ACR+H   E+AEFA+++LL LDP      V L+N+YA  KRW  V  
Sbjct: 362 FKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVAR 421

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           +RKSMK   ++K    S IE+ +  ++F + D+ H +   I+ KL E+  ++K AGYVPD
Sbjct: 422 VRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGYVPD 481

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
           +  AL D+ +E+K +++LWHSEKLA+ YGLI     + IR+ KNLRVC DCH  IK +S+
Sbjct: 482 LEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYISQ 541

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +  REI++RD TRFHH+KDG CSC DYW
Sbjct: 542 IERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 147/313 (46%), Gaps = 41/313 (13%)

Query: 148 FGSDPF----VQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
           F   PF      T ++  Y   G+I  A  +F+KM  +++V W+ MI GY +N   ++ +
Sbjct: 123 FEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGV 182

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            LF  M    ++P+   LS  L  CS    L  G  VH+ +  + +  D    ++LI+MY
Sbjct: 183 KLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMY 242

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
             CG ++    LF +V  +++V   AM+SGY++ G+ + A  +FD+M+EK          
Sbjct: 243 CKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEK---------- 292

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
                                GMKPD +T ++V+ AC H G  D   +    + K+ +G 
Sbjct: 293 ---------------------GMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKD-YGL 330

Query: 384 DLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFN 440
             + ++   ++D+  + G L  A ++ E+M  + +   + +++ A  IH +   A   F 
Sbjct: 331 VAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAE--FA 388

Query: 441 KMKDESIDPNGVT 453
             K  ++DP   T
Sbjct: 389 SQKLLNLDPASAT 401



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 126/278 (45%), Gaps = 10/278 (3%)

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           S L  M    G +  A+ LF K+   + V    M+S Y R   +E A+  F+ M  KD  
Sbjct: 11  SVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTP 70

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            W+ MI+G+A+N    +A  LF  M       + VT  ++IS     G LD A ++    
Sbjct: 71  SWNTMITGFAQNQQMDKARDLFLIMPT----KNVVTWNAMISGYVECGDLDSALKL---F 123

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
           +K  F   +    A+I  Y K G +  A  +FE+M  +N+++W +MI  +  +  A + +
Sbjct: 124 EKAPF-KSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGV 182

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             F  M    I PN  T    L  CS    +  GR++   +  +  +         ++ +
Sbjct: 183 KLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVH-QLVCKSPLCDDTTAGTSLISM 241

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
           + +  +L +  +L   +P   +VV W ++++    HGE
Sbjct: 242 YCKCGVLEDGWKLFVQVP-RRDVVTWNAMISGYAQHGE 278



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 1/214 (0%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P       N  I     +HR +  +K+F  M+  G+  +  +    L   + 
Sbjct: 150 AERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSE 209

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G QVH L  K     D    T L+ MY  CG + D   +F ++  RD+V W+ M
Sbjct: 210 LSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAM 269

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDNN 248
           I GY Q+G   + L LF+EM    ++PD +    +L AC+ AG    G +  H    D  
Sbjct: 270 ISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYG 329

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
           +       + ++ +    G +  A  L +K+  K
Sbjct: 330 LVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFK 363



 Score = 47.4 bits (111), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 90/200 (45%), Gaps = 19/200 (9%)

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
           N+ +  M  K G L+ A+E+F ++   + +S+ +M++ +  + +   A  FF  M  +  
Sbjct: 10  NSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDT 69

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
                   G     +    +D+ R++F  M  +  +      +  M+  +     L  AL
Sbjct: 70  PSWNTMITGF----AQNQQMDKARDLFLIMPTKNVVT-----WNAMISGYVECGDLDSAL 120

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI---YA 564
           +L E  PF  +VV W +++      G I LAE    +L +  P+ +  LV  + +   Y 
Sbjct: 121 KLFEKAPFK-SVVAWTAMITGYMKLGRIGLAE----RLFEKMPEKN--LVTWNAMIAGYI 173

Query: 565 KDKRWQDVGELRKSMKERGI 584
           ++ R +D  +L ++M   GI
Sbjct: 174 ENHRAEDGVKLFRTMVGFGI 193


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/622 (37%), Positives = 361/622 (58%), Gaps = 37/622 (5%)

Query: 105 FLKMLNEGLTIDRFSFPPILKAIARAEGLLEG--MQVHGLGTKLGFGSDPFVQTGLVGMY 162
           F  ML +G+          L A   A  +  G  +Q+  LGT  G   +  VQT LV +Y
Sbjct: 64  FRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGT--GIEEESIVQTALVSLY 121

Query: 163 GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
           G  G   DA  +F +MS+RD+V WS M+  Y +NG   E L LF +M +  V P+++ L 
Sbjct: 122 GKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLV 181

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
             L AC+  G+L  G  +H+ +                           A+G+   V   
Sbjct: 182 SGLDACASLGDLRSGALMHQRV--------------------------EAQGIQSGV--- 212

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
             VV TA+V+ Y + G++E A   F Q+VEK+++ WSA+ + YA N+  ++A+++ + M 
Sbjct: 213 --VVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMD 270

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIH--LYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           + G+ P+  T +SV+ ACA +  L Q +RIH  +++       D+ V  A+++MY+KCG+
Sbjct: 271 LEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGN 330

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           L  A  +F+++   +++ W S+I   A HG    AL  F +M+ E + P  +TF  VL+A
Sbjct: 331 LALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFA 390

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSHAG++D+GR+ F S   ++ I P+ EH+GCMVDL GRA  + ++ +L+  MPF P+ V
Sbjct: 391 CSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPV 450

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
            W + + ACR +  ++ A +AA+ L QLDP      VLLSN+YAK  RW DV  +R++M+
Sbjct: 451 AWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQ 510

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
               +KE   S IE+ + V+EF++ D  H +  +I+ +L  +   +K AGYVPD    L 
Sbjct: 511 LFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKAAGYVPDTEMVLH 570

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D++ E K  ++ +HSEKLA+ + L+++ + S IR+VKNLRVC DCH   K +SK+  REI
Sbjct: 571 DVKQEVKETMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREI 630

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           V+RD  RFH +++G CSC DYW
Sbjct: 631 VVRDCNRFHRFQNGACSCGDYW 652



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 205/409 (50%), Gaps = 35/409 (8%)

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           +LG+  + F+   L+ +Y  C +  DA  +F  +  +++  W++M+  + +N  FD    
Sbjct: 3   ELGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWL 62

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
            F  M +  + P E+ +S  LSAC+ A  ++ G ++   I+   +  ++           
Sbjct: 63  FFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEES----------- 111

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
                               +V TA+VS Y + G   DA  +F +M  +D++ WSAM++ 
Sbjct: 112 --------------------IVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAA 151

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           YA N HP+EAL LF +M + G+ P+KVT++S + ACA LG L     +H  ++       
Sbjct: 152 YARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSG 211

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
           + V  A++++Y KCG +E+A E F ++  +NV++W+++  A+A +   R+A+   ++M  
Sbjct: 212 VVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDL 271

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASM-TNEYNIPPKYEHYGCMVDLFGRANLL 503
           E + PN  TF+ VL AC+    + +GR I   +      +         +V+++ +   L
Sbjct: 272 EGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNL 331

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDP 550
             A  + + +    ++V+W SL+A    HG+ E  L  F   +L  L P
Sbjct: 332 ALAGNMFDKIAHL-DLVLWNSLIATNAQHGQTEKALELFERMRLEGLQP 379



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 178/395 (45%), Gaps = 49/395 (12%)

Query: 47  SLLLKLLLTSF---SLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWS-------- 95
           S+ L +L T     S+  T   SLY  L   +   +   R+S++ +  ++WS        
Sbjct: 97  SIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDV--VAWSAMVAAYAR 154

Query: 96  -HRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFV 154
              P+ AL +F +M  +G+  ++ +    L A A    L  G  +H      G  S   V
Sbjct: 155 NGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVV 214

Query: 155 QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV 214
            T LV +YG CG+I  A   F ++  +++V WS +   Y +N    + + +   M +  +
Sbjct: 215 GTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGL 274

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFI--IDNNVALDAHLQSTLITMYANCGCMDMA 272
            P+      +L AC+    L  G  +HE I  +   +  D ++ + L+ MY+ CG + +A
Sbjct: 275 APNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALA 334

Query: 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
             +FDK+   +LV+  ++++  ++ GQ E                               
Sbjct: 335 GNMFDKIAHLDLVLWNSLIATNAQHGQTE------------------------------- 363

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL-YIDKNAFGGDLRVNNAI 391
           +AL+LF  M++ G++P  +T  SV+ AC+H G+LDQ ++  + +I  +    +      +
Sbjct: 364 KALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCM 423

Query: 392 IDMYAKCGSLESAREVFERMR-RRNVISWTSMINA 425
           +D+  + G +  + ++   M    + ++W + + A
Sbjct: 424 VDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGA 458


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/682 (34%), Positives = 372/682 (54%), Gaps = 63/682 (9%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPILKAIARAE 131
           +F+ +P   +   N  I   S +  P  +++++  +L E  +   R +   ++   +   
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY----------- 180
               G  VH    +LGFG+  FV + LV MY   G I DAR +F +M             
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 181 --------------------RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
                               RD + W+ M+ G  QNGL  E L++F  M+   V  D+  
Sbjct: 221 GLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYT 280

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
              IL+AC        G+ +H +I                T Y +               
Sbjct: 281 FGSILTACGALAASEEGKQIHAYITR--------------TWYED--------------- 311

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
             N+ V +A+V  YS+   +  A  +F +M  +++I W+AMI GY +N   +EA++ F+E
Sbjct: 312 --NVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSE 369

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQ+ G+KPD  T+ SVIS+CA+L  L++  + H     +     + V+NA++ +Y KCGS
Sbjct: 370 MQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGS 429

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E A  +F+ M   + +SWT+++  +A  G A+  +  F KM    + P+GVTFIGVL A
Sbjct: 430 IEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSA 489

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CS AGLV++G + F SM  +++I P  +HY CM+DL+ R+   +EA E ++ MP +P+  
Sbjct: 490 CSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAF 549

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
            W +L+++CR+ G +E+ ++AA+ LL+ DP +  + VLL +++A   +W +V  LR+ M+
Sbjct: 550 GWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMR 609

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           +R + KE  CS I+  N+V+ F   D+SH  + +IYEKL  + S++   GY PD+ S L 
Sbjct: 610 DRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLH 669

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D+ D +K  +I  HSEKLA+ +GLI   ++  IRIVKNLRVC DCHN  K +SK+  R+I
Sbjct: 670 DVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDI 729

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           ++RD  RFH + DG CSC D+W
Sbjct: 730 LVRDAVRFHKFSDGTCSCGDFW 751



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 165/374 (44%), Gaps = 52/374 (13%)

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNV-ALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           +LS       R G    G AVH  I+   + A    L + L+T YA  G +  A+ +FD+
Sbjct: 15  ILSSAAGDGGRTGVRVAG-AVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDE 73

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +   NL    A++S  + +  V D   +F  M E+D + ++A+I+G++    P  +++L+
Sbjct: 74  MPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLY 133

Query: 339 NE-MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
              ++   ++P ++T+ ++I   + L        +H  + +  FG    V + ++DMYAK
Sbjct: 134 RALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAK 193

Query: 398 CGSLESAREVFERMRRRNV-------------------------------ISWTSMINAF 426
            G +  AR VF+ M  + V                               I+WT+M+   
Sbjct: 194 MGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGL 253

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
             +G    AL  F +M+ E +  +  TF  +L AC      +EG++I A +T  +     
Sbjct: 254 TQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTW----- 308

Query: 487 YEHY----GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA-----ACRVHGEIEL 537
           YE        +VD++ +   +R A  +   M    N++ W +++      AC    E  +
Sbjct: 309 YEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT-CRNIISWTAMIVGYGQNAC---SEEAV 364

Query: 538 AEFAAKQLLQLDPD 551
             F+  Q+  + PD
Sbjct: 365 RAFSEMQMDGIKPD 378


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/622 (35%), Positives = 360/622 (57%), Gaps = 33/622 (5%)

Query: 103 KVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162
           +  L+M   G  +    +  +L A      L +G +VH    K  +    +++T L+  Y
Sbjct: 38  EALLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFY 97

Query: 163 GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
           G C  + DAR + D+M  +++V W+ MI  Y Q G   E L +F EM  S+ +P+E   +
Sbjct: 98  GKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFA 157

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            +L++C RA  L  G+ +H  I+  N   D+H+                           
Sbjct: 158 TVLTSCIRASGLGLGKQIHGLIVKWNY--DSHI--------------------------- 188

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
              V ++++  Y++AGQ+++AR IF+ + E+D++  +A+I+GYA+    +EAL++F+ + 
Sbjct: 189 --FVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLH 246

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
             GM P+ VT  S+++A + L +LD  ++ H ++ +        + N++IDMY+KCG+L 
Sbjct: 247 SEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLS 306

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYAC 461
            AR +F+ M  R  ISW +M+  ++ HG  R  L  F  M+DE  + P+ VT + VL  C
Sbjct: 307 YARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGC 366

Query: 462 SHAGLVDEGREIFASMT-NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           SH  + D G  IF  M   EY   P  EHYGC+VD+ GRA  + EA E ++ MP  P   
Sbjct: 367 SHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAG 426

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           + GSL+ ACRVH  +++ E   ++L++++P++ G  V+LSN+YA   RW DV  +R  M 
Sbjct: 427 VLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMM 486

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           ++ + KE   S I+    ++ F   DR+H + +++  K+ E+  ++K AGYVPD+   L 
Sbjct: 487 QKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLY 546

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D+++E+K +++L HSEKLAL +GLI++ +   IR+ KNLR+C DCHNF K+ SKV+ RE+
Sbjct: 547 DVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREV 606

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
            +RD+ RFH   DG+CSC DYW
Sbjct: 607 SLRDKNRFHQIVDGICSCGDYW 628



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 158/344 (45%), Gaps = 32/344 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +  ++P          I   S +     AL VF +M+      + F+F  +L +  R
Sbjct: 106 ARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIR 165

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           A GL  G Q+HGL  K  + S  FV + L+ MY   G+I +AR +F+ +  RD+V  + +
Sbjct: 166 ASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAI 225

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY Q GL +E L +F  +    + P+ +  + +L+A S    L +G+  H  ++   +
Sbjct: 226 IAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRREL 285

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
              A LQ++LI MY+ CG +  A+ LFD +  +  +   AM+ GYS+ G   +   +F  
Sbjct: 286 PFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRL 345

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M ++  +                              KPD VT+L+V+S C+H  + D  
Sbjct: 346 MRDEKRV------------------------------KPDAVTLLAVLSGCSHGRMEDTG 375

Query: 370 QRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERM 411
             I   +    +G      +   I+DM  + G ++ A E  +RM
Sbjct: 376 LNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRM 419


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/615 (38%), Positives = 368/615 (59%), Gaps = 16/615 (2%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDP--FVQTGLVGMYGACGKILDARLMFDKM-- 178
           +L++ AR   L  G ++H      G    P  F+   L+  Y +CG    AR +FD++  
Sbjct: 19  LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPH 78

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
           S++D V W+ ++  + ++ + DE L +F EM+   V+PDE+ L  +   C+R G++  G 
Sbjct: 79  SHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGA 138

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
             H  ++   +       + ++ MYA  G M  A+ +F ++  +++V  T ++ G  R+ 
Sbjct: 139 QGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSE 198

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPDKVTMLSVI 357
            V + R++FD+M E++ + W+ MI+GY ++   QE+  L  EM     M+ + VT+ S++
Sbjct: 199 GVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSIL 258

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGG-DLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           +AC+  G L   + +H Y  K      ++ V  A++DMYAKCG +  A + F++M +RNV
Sbjct: 259 TACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNV 318

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           +SW +M++  A+HG  R AL  F +M  E+  P+ VTF  VL ACSH+GLVD+G   F +
Sbjct: 319 VSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGCFYFGN 377

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           + + Y I PK EHY CMVDL GRA  L EA  LV  MP  PN V+ GSL+ +C +HG+++
Sbjct: 378 LESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQ 437

Query: 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMN 596
           L E   ++L+QLDP +    +LLSN+YA   +      LR+ +K+RGI K    S I + 
Sbjct: 438 LGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVG 497

Query: 597 NEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH-------SALVD--LEDEEK 647
            +V++F   D+SH +T ++Y  L+E+I  L+ AGY P+          +L D  +E EEK
Sbjct: 498 GQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQEEK 557

Query: 648 REVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTR 707
            + +  HSEKLA+C+GLIS+     + I KNLR+C+DCH+ IK+VSK+Y REIVIRDR R
Sbjct: 558 EQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNR 617

Query: 708 FHHYKDGVCSCKDYW 722
           FH +K+G CSC DYW
Sbjct: 618 FHCFKEGSCSCCDYW 632



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 159/366 (43%), Gaps = 69/366 (18%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL +F++M   G+  D  +   +    AR   ++ G Q HG   K+G G        ++ 
Sbjct: 102 ALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMD 161

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMID----------------------------- 191
           MY   G + +AR +F +M  + +V W+V++D                             
Sbjct: 162 MYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIM 221

Query: 192 --GYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
             GY  +GL  E   L  EM     +E + + L  IL+ACS++G+L  G  VH + +   
Sbjct: 222 IAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTK 281

Query: 249 -VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
              L+  + + ++ MYA CG + +A   F K+  +N+V   AM+SG +  G    A  IF
Sbjct: 282 EKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIF 341

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
            QM ++                                 KPD VT  SV+SAC+H G++D
Sbjct: 342 PQMFKE--------------------------------AKPDDVTFTSVLSACSHSGLVD 369

Query: 368 QAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMIN 424
           Q    +    ++ +G   +V +   ++D+  + G LE A  +   M  R N +   S++ 
Sbjct: 370 QGC-FYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLG 428

Query: 425 AFAIHG 430
           + +IHG
Sbjct: 429 SCSIHG 434


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/683 (35%), Positives = 370/683 (54%), Gaps = 39/683 (5%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKM---------------LNE 111
           L  ALS F  IP P S   N  + A+  S        +F +M                N 
Sbjct: 154 LPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANH 213

Query: 112 GLTI------------DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           GL              D  S+  +L A  R   + E  ++    T+     D      L+
Sbjct: 214 GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEW----DAISWNALM 269

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
             Y    +I +A+ MF+KM  RD+V W+ M+ GY + G   E   LF+   + +V     
Sbjct: 270 AGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDV----F 325

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
             + I+S  ++ G L   + V + + D N    A   + ++  Y     M+ AK LFD +
Sbjct: 326 TWTAIVSGYAQNGMLEEAKRVFDAMPDKN----AVSWNAMMAAYVQRRMMEEAKELFDAM 381

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
             +N+     M++GY++AG +++AR IF  M +KD + W+AM++ Y++    +E L+LF 
Sbjct: 382 PCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFK 441

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           EM  CG   ++     V+S CA +  L+   ++H  + K  +G    V NA++ MY KCG
Sbjct: 442 EMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCG 501

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           S+E A   FE M  R+V+SW +MI  +A HG  + AL  F+ M+  S  P+ +T +GVL 
Sbjct: 502 SMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLA 561

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           ACSH+GLV++G   F SM  ++ +  K EHY CM+DL GRA  L EA+ L++ MPF P+ 
Sbjct: 562 ACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDS 621

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
            +WG+L+ A R+H   EL   AA+++ +L+P++ G  VLLSNIYA   +W+DV ++R  M
Sbjct: 622 TMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIM 681

Query: 580 KERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
            ERG+ K    S IE+ N+V+ F   D  H + + IY  L ++   +K AGYV      L
Sbjct: 682 HERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVL 741

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
            D+E+EEK  ++ +HSEKLA+ YG++       IR++KNLRVC DCH   K +S +  R 
Sbjct: 742 HDVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRL 801

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           I++RD  RFHH++DG CSC DYW
Sbjct: 802 IILRDSNRFHHFRDGSCSCGDYW 824



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 169/349 (48%), Gaps = 25/349 (7%)

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
            G++ DA  +F  M  R    ++ M+ GY  NG   + L+ F  +      PD    + +
Sbjct: 120 AGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP----RPDSFSYNTL 175

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L A   + +L+   A    + D     D+   + +I+ +AN G + +A+  FD    K+ 
Sbjct: 176 LHALGVSSSLADVRA----LFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDA 231

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
           V    M++ Y R G++++AR +FD   E D I W+A+++GY + +  +EA K+FN+M   
Sbjct: 232 VSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMP-- 289

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
             + D V+  +++S  A  G + +A+R+       A   D+    AI+  YA+ G LE A
Sbjct: 290 --QRDVVSWNTMVSGYARRGDMAEARRLF----DVAPIRDVFTWTAIVSGYAQNGMLEEA 343

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
           + VF+ M  +N +SW +M+ A+        A   F+ M   ++     ++  +L   + A
Sbjct: 344 KRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNV----ASWNTMLTGYAQA 399

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
           G++DE R IF  M  +  +      +  M+  + +     E L+L + M
Sbjct: 400 GMLDEARAIFGMMPQKDAV-----SWAAMLAAYSQIGFSEETLQLFKEM 443



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 153/337 (45%), Gaps = 24/337 (7%)

Query: 215 EPDEMVL--SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
           +PD  V+  ++ ++A  RAG +   E +   +   + +      +T++  YA  G +  A
Sbjct: 102 KPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTST----YNTMLAGYAANGRLPQA 157

Query: 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
              F  +   +      ++     +  + D R +FD+M  KD + ++ MIS +A +    
Sbjct: 158 LSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVS 217

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
            A   F+       + D V+   +++A    G + +A+   L+  +  +  D    NA++
Sbjct: 218 LARHYFD----LAPEKDAVSWNGMLAAYVRNGRIQEAR--ELFDSRTEW--DAISWNALM 269

Query: 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
             Y +   +E A+++F +M +R+V+SW +M++ +A  GD   A   F+      +     
Sbjct: 270 AGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDV----F 325

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
           T+  ++   +  G+++E + +F +M ++  +      +  M+  + +  ++ EA EL + 
Sbjct: 326 TWTAIVSGYAQNGMLEEAKRVFDAMPDKNAV-----SWNAMMAAYVQRRMMEEAKELFDA 380

Query: 513 MPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           MP   NV  W +++      G ++ A      + Q D
Sbjct: 381 MP-CRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKD 416


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/625 (36%), Positives = 354/625 (56%), Gaps = 53/625 (8%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           +  L ++ +M+  G+ +D  +   +L   A +  L  G  VH L  K  F         L
Sbjct: 233 ERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTL 292

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + MY  CG +  A  +F+KM  R++V W+ MI GY ++G  D  + L ++M+   V+ D 
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDV 352

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           + ++ IL AC+R+G+L  G+ VH++I  NN+                             
Sbjct: 353 VAITSILHACARSGSLDNGKDVHDYIKANNME---------------------------- 384

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
               NL V  A++  Y++ G +E A  +F  MV KD+I W+ MI                
Sbjct: 385 ---SNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGE-------------- 427

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
                  +KPD  TM  V+ ACA L  L++ + IH YI +N +  D  V NA++D+Y KC
Sbjct: 428 -------LKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G L  AR +F+ +  ++++SWT MI  + +HG    A+  FN+M+D  I+P+ V+FI +L
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
           YACSH+GL+++G   F  M N++NI PK EHY CMVDL  R   L +A E +ET+P AP+
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPD 600

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
             IWG+L+  CR + +IELAE  A+++ +L+P++ G  VLL+NIYA+ ++W++V  LR+ 
Sbjct: 601 ATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREK 660

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADR-SHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
           + ++G+ K   CS IE+  +V  F++ +  SH  +  I   L ++  ++K  G+ P    
Sbjct: 661 IGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKY 720

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
           AL++ ++ +K   +  HSEKLA+ +GL++      IR+ KNLRVC DCH   K +SK   
Sbjct: 721 ALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETR 780

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           REIV+RD  RFHH+KDG CSC+ +W
Sbjct: 781 REIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 168/333 (50%), Gaps = 22/333 (6%)

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
           E +      +L  C+   + + G+ VH  I  N+V +D  L   L++ YA CG +   + 
Sbjct: 96  ELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRR 155

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQV--------------------EDARLIFDQMVEKD 314
           +FD +  KN+ +   MVS Y++ G                      E A  +FD++ ++D
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRD 215

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           +I W++MISGY  N   +  L ++ +M   G+  D  T++SV+  CA+ G L   + +H 
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
              K++F   +  +N ++DMY+KCG L+ A  VFE+M  RNV+SWTSMI  +   G +  
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDG 335

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           A+    +M+ E +  + V    +L+AC+ +G +D G+++   +    N+         ++
Sbjct: 336 AIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALM 394

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
           D++ +   +  A  +  TM    +++ W +++ 
Sbjct: 395 DMYAKCGSMEAANSVFSTM-VVKDIISWNTMIG 426



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 157/344 (45%), Gaps = 55/344 (15%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           AL +F ++           I   +   R   A+K+  +M  EG+ +D  +   IL A AR
Sbjct: 305 ALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACAR 364

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           +  L  G  VH         S+ FV   L+ MY  CG +  A  +F  M  +DI+ W+ M
Sbjct: 365 SGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTM 424

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I                       ++PD   ++ +L AC+    L  G+ +H +I+ N  
Sbjct: 425 I---------------------GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGY 463

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
           + D H+ + L+ +Y  CG + +A+ LFD +  K+LV  T M++GY   G           
Sbjct: 464 SSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHG----------- 512

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                               +  EA+  FNEM+  G++PD+V+ +S++ AC+H G+L+Q 
Sbjct: 513 --------------------YGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG 552

Query: 370 QRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERM 411
            R   YI KN F  + ++ +   ++D+ ++ G+L  A E  E +
Sbjct: 553 WRF-FYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETL 595


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/674 (35%), Positives = 376/674 (55%), Gaps = 41/674 (6%)

Query: 53  LLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG 112
           +L+++S     P+        F ++P       N  I A   +         F  ML +G
Sbjct: 1   MLSAYSQIGNIPA----VRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQG 56

Query: 113 LTIDRFSFPPILKAIARAEGLLEG--MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD 170
           +          L A   A  +  G  +Q+  LGT  G   +  VQT LV MYG  G   D
Sbjct: 57  INPGEVGISIFLSACTDAREITIGRSIQLAILGT--GIEEESIVQTALVSMYGKLGHCTD 114

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           A  +F +MS+RD+V WS M+  Y +NG   E L LF +M +  V P+++ L   L AC+ 
Sbjct: 115 AASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACAS 174

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
            G+L  G  +H+ +                           A+G+   V     VV TA+
Sbjct: 175 LGDLRSGALMHQRV--------------------------EAQGIQSGV-----VVGTAL 203

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           V+ Y + G++E A   F Q+VEK+++ WSA+ + YA N+  ++A+++ + M + G+ P+ 
Sbjct: 204 VNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNS 263

Query: 351 VTMLSVISACAHLGVLDQAQRIH--LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
            T +SV+ ACA +  L Q +RIH    +       D+ V  A+++MY+KCG+L  A ++F
Sbjct: 264 TTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMF 323

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
           +++   +++ W S+I   A HG    AL  F +M+ E + P  +TF  VL+ACSHAG++D
Sbjct: 324 DKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLD 383

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           +GR+ F S   ++ I P+ EH+GCMVDL GRA  + ++ +L+  MPF P+ V W + + A
Sbjct: 384 QGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGA 443

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           CR +  ++ A +AA+ L QLDP      VLLSN+YAK  RW DV  +R++M+    +KE 
Sbjct: 444 CRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEA 503

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
             S IE+ + V+EF++ D  H +  +I+ +L  +   +K AGYVPD    L D++ E K 
Sbjct: 504 GRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKE 563

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
            ++ +HSEKLA+ + L+++ + S IR+VKNLRVC DCH   K +SK+  REIV+RD  RF
Sbjct: 564 IMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRF 623

Query: 709 HHYKDGVCSCKDYW 722
           H +++G CSC DYW
Sbjct: 624 HRFQNGACSCGDYW 637


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/604 (38%), Positives = 354/604 (58%), Gaps = 35/604 (5%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           I+  + R+  + + + +H    + G   DPF+   L+     C  I  A  +F      +
Sbjct: 42  IISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPN 101

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +  ++ +IDG+  +G + E + L+  M   ++ PD  +++ IL AC     L  G  VH 
Sbjct: 102 VYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVH- 160

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
                + AL     S                         N +V   ++  Y + G++ D
Sbjct: 161 -----SRALKLGFSS-------------------------NRLVRLRIMELYGKCGELGD 190

Query: 303 ARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
           AR +F++M    V KD +CW+AMI G+  N     AL+ F  MQ   ++P++ T++ V+S
Sbjct: 191 ARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLS 250

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           AC+ LG L+  + +H Y+ K     +L V NA+I+MY++CGS++ A+ VF+ M+ R+VI+
Sbjct: 251 ACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVIT 310

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           + +MI+  +++G +R A+  F  M    + P  VTF+GVL ACSH GLVD G EIF SM 
Sbjct: 311 YNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMA 370

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
            +Y + P+ EHYGCMVDL GR   L EA +L+ TM   P+ ++ G+L++AC++H  +EL 
Sbjct: 371 RDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELG 430

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
           E  AK+L        G  VLLS++YA   +W++  ++R  MKE G+ KE  CS IE+NNE
Sbjct: 431 EQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNE 490

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           ++EFL  D  H Q ++IYEKL E+   L+  GY P+    L D+ED EK   +  HSE+L
Sbjct: 491 IHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERL 550

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+CYGLIS++  + IR++KNLRVC DCH+ IKL++K+  R+IV+RDR RFH++++G CSC
Sbjct: 551 AICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSC 610

Query: 719 KDYW 722
            DYW
Sbjct: 611 GDYW 614



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 224/487 (45%), Gaps = 58/487 (11%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMKQT---HAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           S P    +L     IS      H+ Q    HAQ+++   + HSQ+  ++  LL S S   
Sbjct: 29  SNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIR---NGHSQDPFMVFELLRSCS--- 82

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
               ++ YA  IF     P   +    I     S     A++++ +ML+E +  D +   
Sbjct: 83  -KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMA 141

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS-- 179
            ILKA      L EG +VH    KLGF S+  V+  ++ +YG CG++ DAR +F++M   
Sbjct: 142 SILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPED 201

Query: 180 --YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
              +D V W+ MIDG+ +N   +  L  F  M+  NV P+E  +  +LSACS+ G L  G
Sbjct: 202 VVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG 261

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
             VH ++    + L+  + + LI MY+ CG +D A+ +FD++  ++++    M+SG S  
Sbjct: 262 RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMN 321

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           G+   A  +F  MV + L                               +P  VT + V+
Sbjct: 322 GKSRQAIELFRVMVGRRL-------------------------------RPTNVTFVGVL 350

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI------IDMYAKCGSLESAREVFERM 411
           +AC+H G++D    I      ++   D RV   I      +D+  + G LE A ++   M
Sbjct: 351 NACSHGGLVDFGFEIF-----HSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTM 405

Query: 412 RRR-NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           +   + I   ++++A  +H +         +++D     +G T++ + +  + +G   E 
Sbjct: 406 KMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSG-TYVLLSHVYASSGKWKEA 464

Query: 471 REIFASM 477
            ++ A M
Sbjct: 465 AQVRAKM 471



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 146/355 (41%), Gaps = 22/355 (6%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P   L      A  S  +L   ++ H++ LKL  S    ++ L++L +            
Sbjct: 135 PDNYLMASILKACGSQLALREGREVHSRALKLGFS----SNRLVRLRIMEL---YGKCGE 187

Query: 67  LYYALSIFSQIP----APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
           L  A  +F ++P    A  +      I     +     AL+ F  M  E +  + F+   
Sbjct: 188 LGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVC 247

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +L A ++   L  G  VH    K     + FV   L+ MY  CG I +A+ +FD+M  RD
Sbjct: 248 VLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRD 307

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVH 241
           ++ ++ MI G   NG   + + LF  M    + P  +    +L+ACS  G + +G E  H
Sbjct: 308 VITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFH 367

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF-------DKVLLKNLVVSTAMVSGY 294
               D  V         ++ +    G ++ A  L        D ++L  L+ +  M    
Sbjct: 368 SMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNL 427

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
               QV  A+ + D+  + D   +  +   YA +   +EA ++  +M+  GM+ +
Sbjct: 428 ELGEQV--AKELEDRG-QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKE 479



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 7/181 (3%)

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
           D+  ++S++    H+   +Q   IH  + +N    D  +   ++   +KC +++ A  +F
Sbjct: 38  DQKQIISLLQRSRHI---NQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIF 94

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
           +     NV  +T++I+ F   G+   A+  +++M  ESI P+      +L AC     + 
Sbjct: 95  QYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALR 154

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP---FAPNVVIWGSL 525
           EGRE+ +          +      M +L+G+   L +A  + E MP    A + V W ++
Sbjct: 155 EGREVHSRALKLGFSSNRLVRLRIM-ELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAM 213

Query: 526 M 526
           +
Sbjct: 214 I 214


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/644 (37%), Positives = 365/644 (56%), Gaps = 31/644 (4%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           ++ VF  ML++G+  D  +   IL A +      + + +HG   + GF S+ FV   L+ 
Sbjct: 322 SMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIE 381

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM----------- 209
           +Y  CG + DA  +F  M  RD+V WS MI  Y  +G   E L +F++M           
Sbjct: 382 LYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCY 441

Query: 210 ---KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
                  V+P   + S     C+ A ++ +   V  F +  +     H      T     
Sbjct: 442 QISMQPQVQPPLAITS-----CTLATHIPW--KVKAFYMRAHFRWLGHFWEIFPTYPFQA 494

Query: 267 GCMDMAKG-LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
              DM+K  +F   L  +  + T     Y    +++ A ++F+ +       W+ MI G+
Sbjct: 495 A--DMSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGF 552

Query: 326 AENNHPQEALKLFNEMQVCGMKPD-------KVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           A +     +L+L+++M   G+KPD       +V++LSV+ AC +LG L + +  H Y+ +
Sbjct: 553 ATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQ 612

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
             F  D+ V  AI+DMY+KCGSL+ AR +F+    ++++ W++MI ++ IHG  R A+  
Sbjct: 613 TGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDL 672

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F++M    + P+ VTF  VL ACSH+GL++EG+  F  MT E+ I  K  +Y CMVDL G
Sbjct: 673 FDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLG 732

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558
           RA  L EA++L+E MP  P+  IWGSL+ ACR+H  ++LAE  A  L  LDP H G  VL
Sbjct: 733 RAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVL 792

Query: 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEK 618
           LSNIYA   RW +V ++RK M  RG  K +  S +E +N+V++F   DRSH Q +++Y K
Sbjct: 793 LSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAK 852

Query: 619 LNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKN 678
           L E+ + +K  GYVP     L D+E+E K   + +HSE+LA+ +GLI++   + +RI KN
Sbjct: 853 LEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKN 912

Query: 679 LRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LR+C DCHN IKL+SK+  R I++RD  RFH ++DGVCSC DYW
Sbjct: 913 LRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 218/431 (50%), Gaps = 22/431 (5%)

Query: 21  SCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAP 80
           +C++   + Q H+Q+ K    H +          T  +      +SL  A  +F + P P
Sbjct: 13  ACNNGRSVSQLHSQVFKTGILHDT-------FFATKLNSLYAKCASLQAARKVFDETPHP 65

Query: 81  PSRVSNKFIRAISWSHRPKHALKVF-LKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQV 139
              + N  +R+     + +  L++F L +   G   D F+ P  LKA A    L  G  +
Sbjct: 66  NVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVI 125

Query: 140 HGLGTKLG-FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           HG   K    GSD FV + LV +Y  CG++ +A  +F++    D V W+ M+ GY QN  
Sbjct: 126 HGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNND 185

Query: 199 FDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
            +E L LF +M M +  + D  +++ +L+  ++ G     E +   +       D    S
Sbjct: 186 PEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTG----CEKIAANLFSKMPEKDVISWS 241

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNL------VVSTAMVSGYSRAGQVEDARLIFDQMV 311
           T+I  YAN    + A  LF +++ K        VVS       SR   +E+ + I    V
Sbjct: 242 TMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSR--NLEEGKKIHKIAV 299

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
            KD++ W A++SGYA+N    +++ +F  M   G++PD V ++ +++A + LG+  QA  
Sbjct: 300 WKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALC 359

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           +H Y+ ++ F  ++ V  ++I++Y+KCGSL  A ++F+ M  R+V+ W+SMI A+ IHG 
Sbjct: 360 LHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGR 419

Query: 432 ARNALIFFNKM 442
              AL  F++M
Sbjct: 420 GGEALEIFDQM 430



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/453 (25%), Positives = 199/453 (43%), Gaps = 83/453 (18%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           Q+H    K G   D F  T L  +Y  C  +  AR +FD+  + ++  W+  +  Y +  
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 198 LFDEVLNLFEEMKMSNVE-PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN-VALDAHL 255
            ++E L LF  M  +  E PD   +   L AC+    L  G+ +H F   N+ +  D  +
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFV 141

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV---- 311
            S L+ +Y+ CG M  A  +F++    + V+ T+MV+GY +    E+A  +F QMV    
Sbjct: 142 GSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDC 201

Query: 312 --------------------------------EKDLICWSAMISGYAENNHPQEALKLFN 339
                                           EKD+I WS MI+ YA N    EAL LF+
Sbjct: 202 FDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFH 261

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           EM     +P+ VT++S + ACA              + +N                    
Sbjct: 262 EMIEKRFEPNSVTVVSALQACA--------------VSRN-------------------- 287

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
            LE  +++ +    ++V+SW ++++ +A +G A  ++  F  M  + I P+ V  + +L 
Sbjct: 288 -LEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILA 346

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHY----GCMVDLFGRANLLREALELVETMPF 515
           A S  G+  +     A   + Y +   +         +++L+ +   L +A++L + M  
Sbjct: 347 ASSELGIFQQ-----ALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGM-I 400

Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
             +VVIW S++AA  +HG    A     Q++Q+
Sbjct: 401 VRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQV 433



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 133/297 (44%), Gaps = 38/297 (12%)

Query: 53  LLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG 112
           +LT F++   + + +  A  +F  IP P S + N  IR  +   R   +L+++ KM+ +G
Sbjct: 513 ILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKG 572

Query: 113 LTID-------RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC 165
           L  D       R S   +L A      L +G   H    + GF  D  V T ++ MY  C
Sbjct: 573 LKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKC 632

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           G +  AR +FD+ + +D+V WS MI  Y  +G   + ++LF++M  + V P  +  + +L
Sbjct: 633 GSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVL 692

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
           SACS +G L  G+   + + +                              + V+ + L 
Sbjct: 693 SACSHSGLLEEGKMYFQLMTE------------------------------EFVIARKLS 722

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQM-VEKDLICWSAMISGYAENNHPQEALKLFNEM 341
               MV    RAGQ+ +A  + + M VE D   W +++     +N+   A K+ + +
Sbjct: 723 NYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHL 779


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/487 (43%), Positives = 309/487 (63%), Gaps = 1/487 (0%)

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV-LLKNLVVSTAMVSGYS 295
           G  VH   +    A D ++++  I  Y  CG +   + +FD++ +++++V   A+++GY 
Sbjct: 151 GTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYV 210

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           RAG V  AR +FD M  +D + WS +I GY +   P+ AL +F  M   G+K ++  +++
Sbjct: 211 RAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVT 270

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
            +SA A LG+L+Q + +H  + +      + +  A+IDMY+KCGS+ +A+EVF+ M RR+
Sbjct: 271 ALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRD 330

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V +W SMI   A HG   +A+  F K   E   P  +TF+GVL ACS  GLVDEGR  F 
Sbjct: 331 VFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFK 390

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
            M  +Y+I  + EHYGCMVDL  RA L++EA+EL+E M   P+ V+WG++++AC+ HG +
Sbjct: 391 LMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLV 450

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           +L      +L++LDP HDG  VLL++IYAK K+W +V ++RK M  RG  K    S +E 
Sbjct: 451 DLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEA 510

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
           +  V++FL  D +HK + +IY  L  +   L  AGYVPD+ S L D+ DEEK   I  HS
Sbjct: 511 HGIVHKFLVGDMNHKDSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHS 570

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           E+LA+ YG I  +  S IRIVKNL VC DCH F K+V+KV+ REIV+RD +RFHH KDG 
Sbjct: 571 ERLAIAYGFIVVEAGSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRDGSRFHHMKDGK 630

Query: 716 CSCKDYW 722
           CSC DYW
Sbjct: 631 CSCHDYW 637



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 118/506 (23%), Positives = 210/506 (41%), Gaps = 95/506 (18%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLL----KLLLTSFSLPTTTP---------SSLYYA 70
           +L H+ Q HA++  L  +       LL    +L L +  +  + P         +S + +
Sbjct: 38  ALYHVLQAHARLAVLGLATARALPQLLAALPRLTLAAADVSHSYPLLLFRCSNCTSAFAS 97

Query: 71  LSIFSQIPAP-PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
             +   +P P P R+  +  R      R  H+    L  L+  L  +    P    +IA 
Sbjct: 98  NHLLRVLPHPLPLRLFPRLPR------RNPHSFTFLLASLSNHLDTE----PAAAGSIAS 147

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACG------KILD------------- 170
                 G  VH L  K G   D +V+   +  YG CG      K+ D             
Sbjct: 148 R---FMGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNA 204

Query: 171 -------------ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
                        AR +FD M  RD V WS +I GY + G  +  L +F+ M    V+ +
Sbjct: 205 VLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKAN 264

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           E  +   LSA ++ G L  G+ VHE +    + +  +L + LI MY+ CG +  AK +FD
Sbjct: 265 EAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFD 324

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
            +  +++    +M+ G +  G   DA  +F++ V +                        
Sbjct: 325 AMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSE------------------------ 360

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYA 396
                  G  P  +T + V++AC+  G++D+ +R   L  +K     ++     ++D+ +
Sbjct: 361 -------GFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLS 413

Query: 397 KCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           + G ++ A E+ E MR   + + W ++++A   HG     +   NK+ +  +DP    + 
Sbjct: 414 RAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIE--LDPAHDGYY 471

Query: 456 GVLYAC-SHAGLVDEGREIFASMTNE 480
            +L +  + A   DE R++   M+N 
Sbjct: 472 VLLASIYAKAKKWDEVRKVRKLMSNR 497


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/501 (43%), Positives = 324/501 (64%), Gaps = 6/501 (1%)

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG-CMDMAKGLFDKVLLK 282
           + + C+  G++     V E + ++NV       + +IT Y   G C   A  LF K++  
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMS----WTAIITAYVQSGECDKEAIELFCKMISA 56

Query: 283 NL-VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           ++  V  +++S Y+R+G++EDAR  FD + EK+L+ ++A++ GYA+N   +EA  LFNE+
Sbjct: 57  SVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 116

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
              G+     T  S++S  A +G + + ++IH  + K  +  +  + NA+I MY++CG++
Sbjct: 117 ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNI 176

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
           E+A +VF  M  RNVISWTSMI  FA HG A  AL  F+KM +    PN +T++ VL AC
Sbjct: 177 EAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 236

Query: 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI 521
           SH G++ EG++ F SM  E+ I P+ EHY CMVDL GR+ LL EA+E + +MP   + ++
Sbjct: 237 SHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALV 296

Query: 522 WGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581
           W +L+ ACRVHG  EL   AA+ +L+ +PD   A +LLSN++A   +W+DV ++RKSMKE
Sbjct: 297 WRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKE 356

Query: 582 RGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVD 641
           R ++KE  CS IE+ N V+ F   + SH Q  QIY++L+++ S++K  GY+PD    L D
Sbjct: 357 RNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHD 416

Query: 642 LEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIV 701
           +E+E+K + +  HSEK+A+ +GLIS+ +   IRI KNLRVC DCH  IK +S    REIV
Sbjct: 417 IEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIV 476

Query: 702 IRDRTRFHHYKDGVCSCKDYW 722
           +RD  RFHH K+GVCSC DYW
Sbjct: 477 VRDSNRFHHIKNGVCSCNDYW 497



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 170/345 (49%), Gaps = 51/345 (14%)

Query: 161 MYGAC---GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD-EVLNLFEEMKMSNVEP 216
           MY  C   G + D+R +F++M   +++ W+ +I  Y Q+G  D E + LF +M  ++V  
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASV-- 58

Query: 217 DEMVLSKILSACSRAG-----------------------------NLSYGEAVHEF--II 245
              V + ++S  +R+G                             NL   EA   F  I 
Sbjct: 59  -NCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIA 117

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL----LKNLVVSTAMVSGYSRAGQVE 301
           D  + + A   ++L++  A+ G M   + +  ++L      N  +  A++S YSR G +E
Sbjct: 118 DTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIE 177

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
            A  +F++M ++++I W++MI+G+A++     AL++F++M   G KP+++T ++V+SAC+
Sbjct: 178 AAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACS 237

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVIS 418
           H+G++ + Q+ H        G   R+ +   ++D+  + G L  A E    M    + + 
Sbjct: 238 HVGMISEGQK-HFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALV 296

Query: 419 WTSMINAFAIHGD---ARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           W +++ A  +HG+    R+A      ++ E  DP     +  L+A
Sbjct: 297 WRTLLGACRVHGNTELGRHAAEMI--LEQEPDDPAAYILLSNLHA 339



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 78/142 (54%)

Query: 97  RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQT 156
           + + A  +F ++ + G+ I  F+F  +L   A    + +G Q+HG   K G+ S+  +  
Sbjct: 105 KSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICN 164

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
            L+ MY  CG I  A  +F++M  R+++ W+ MI G+ ++G     L +F +M  +  +P
Sbjct: 165 ALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKP 224

Query: 217 DEMVLSKILSACSRAGNLSYGE 238
           +E+    +LSACS  G +S G+
Sbjct: 225 NEITYVAVLSACSHVGMISEGQ 246


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/625 (36%), Positives = 357/625 (57%), Gaps = 35/625 (5%)

Query: 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
            AL ++ +ML  G   + F+FP  LK+ A     + G Q HG  TK+G   +PFVQTGL+
Sbjct: 23  QALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLI 82

Query: 160 GMYGACGKILDARLMFDK--MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
            MY     + +AR +F++   S +  V ++ ++ GY  N    + + LF +M    V  +
Sbjct: 83  SMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVN 142

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
            + L  ++ AC    NL  G ++H   +      D  + +  ITMY  CG ++ A+ L  
Sbjct: 143 SVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKL-- 200

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                                        FD+M  K LI W+AM+SGYA+N      L+L
Sbjct: 201 -----------------------------FDEMPVKGLISWNAMVSGYAQNGLATNVLEL 231

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           +  M + G+ PD VT++ V+S+CA+LG       +   +  + F  +  +NNA+I+MYA+
Sbjct: 232 YRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYAR 291

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CG+L  A+ VF+ M  R ++SWT++I  + +HG    A+  F +M    I+P+G  F+ V
Sbjct: 292 CGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCV 351

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L ACSHAGL D+G E F  M   Y + P  EHY CMVDL GRA  L+EA  L+E+MP  P
Sbjct: 352 LSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKP 411

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
           +  +WG+L+ AC++H  +ELAE A +++++L+P++ G  VLLSNIY+     + V  +R 
Sbjct: 412 DGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRI 471

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            MKE+ + K+  CS +E+   V+ F+  DR+H Q+D+IY  L E+ + +      P+  +
Sbjct: 472 MMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKDN 531

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
                +D   R  +  HSEKLA+ +GL+++   + + I+KNLR+CEDCH F K+VSK+  
Sbjct: 532 REESNKDGFTRVGV--HSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVH 589

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           R++ +RD TRFHH+++G CSCKDYW
Sbjct: 590 RQLTVRDATRFHHFRNGSCSCKDYW 614



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 150/328 (45%), Gaps = 20/328 (6%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
            S+ YA  +F ++P       N  +   + +    + L+++  M   G+  D  +   +L
Sbjct: 192 GSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVL 251

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            + A       G +V       GF S+PF+   L+ MY  CG +  A+ +FD M  R +V
Sbjct: 252 SSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLV 311

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ +I GY  +G  +  + LF+EM  S +EPD      +LSACS AG    G    + +
Sbjct: 312 SWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFK-M 370

Query: 245 IDNNVALDAHLQ--STLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVE 301
           +  N  L+   +  S ++ +    G +  A+ L + + +K +  V  A++        VE
Sbjct: 371 MKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVE 430

Query: 302 DARLIFDQMV--EKDLICWSAMISG-YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
            A L F++++  E + I +  ++S  Y+  N+ +  L++   M+   +K D         
Sbjct: 431 LAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKD--------P 482

Query: 359 ACAHLGVLDQAQRIHLYI--DKNAFGGD 384
            C++   ++   R+H +I  D+N    D
Sbjct: 483 GCSY---VELKGRVHPFIVGDRNHLQSD 507



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 101/218 (46%), Gaps = 4/218 (1%)

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W+  +   A+     +AL L+ +M   G +P+  T    + +CA L +     + H  I 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFER--MRRRNVISWTSMINAFAIHGDARNA 435
           K     +  V   +I MY K   +++AR+VFE     R+  + + ++++ +  +    +A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
           ++ F +M +E +  N VT +G++ AC     ++ G  +  S T +Y          C + 
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCS-TLKYGFDSDVSVVNCFIT 186

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           ++ +   +  A +L + MP    ++ W ++++    +G
Sbjct: 187 MYMKCGSVNYAQKLFDEMP-VKGLISWNAMVSGYAQNG 223


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/623 (35%), Positives = 357/623 (57%), Gaps = 32/623 (5%)

Query: 101 ALKVFLKM-LNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           A  +F +M + E + ++  +   IL A      L    ++HG   + GF  D  V  G V
Sbjct: 219 AFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFV 278

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
             Y  CG ++ A  +F  M  + +  W+ +I G  QNG   + LNL+ +M  S + PD  
Sbjct: 279 AAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWF 338

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
            +  +L A +   +L YG+ VH F++ + + +D+ +  +L+++Y +CG            
Sbjct: 339 TIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCG------------ 386

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
                              +   ARL+FD M EK  + W+AMISGY++N  P++AL LF 
Sbjct: 387 -------------------ESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFR 427

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           ++   G +P  + ++SV+ AC+    L   +  H Y  K     D+ V  + IDMYAK G
Sbjct: 428 KLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSG 487

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
            ++ +R VF+ ++ +++ SW ++I A+ +HGD   ++  F +M+     P+G TFIG+L 
Sbjct: 488 CIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILT 547

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
            CSHAGLV+EG + F  M N + I PK EHY C++D+ GRA  L +AL LV  MP  P+ 
Sbjct: 548 VCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDS 607

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
            +W SL++ CR  GE+E+ +  A++LL+L+P +    V LSN+YA   RW DV  +R+ +
Sbjct: 608 RVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMI 667

Query: 580 KERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
           K+ G+ K+  CS IE+  +V+ F+  D    Q+ ++     ++  ++   GY P+  + L
Sbjct: 668 KDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVL 727

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
            D+++E+K E +  HSEKLA+C+GL+++ K + +RI KNLR+C DCHN  K +S+V  RE
Sbjct: 728 HDVDEEKKIEKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGRE 787

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           I+IRD  RFHH+KDG+CSC DYW
Sbjct: 788 IIIRDNKRFHHFKDGLCSCGDYW 810



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 225/471 (47%), Gaps = 38/471 (8%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML--NEGLTIDRFSFPPILKAI 127
           A+ +F  +P       N  I   S +   K    + ++M+   EGL  D  +   +L   
Sbjct: 85  AVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVC 144

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
           AR   +  G+++HGL  KLG   D  V   LV MY  CG + +A+++FDK + ++ V W+
Sbjct: 145 AREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWN 204

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
            MI G    G   E  NLF EM+M  ++E +E+ +  IL AC     L   + +H + I 
Sbjct: 205 TMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIR 264

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
           +    D  + +  +  YA CG +  A+ +F                 YS           
Sbjct: 265 HGFQYDELVANGFVAAYAKCGMLICAERVF-----------------YS----------- 296

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
              M  K +  W+A+I G A+N  P++AL L+ +M   G+ PD  T+ S++ A AHL  L
Sbjct: 297 ---METKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSL 353

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
              + +H ++ ++    D  +  +++ +Y  CG   SAR +F+ M  ++ +SW +MI+ +
Sbjct: 354 RYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGY 413

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           + +G   +ALI F K+  +   P+ +  + VL ACS    +  G+E          +   
Sbjct: 414 SQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDV 473

Query: 487 YEHYGC-MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           +    C  +D++ ++  ++E+  + + +    ++  W +++AA  VHG+ E
Sbjct: 474 F--VACSTIDMYAKSGCIKESRSVFDGLK-NKDLASWNAIIAAYGVHGDGE 521



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 180/378 (47%), Gaps = 37/378 (9%)

Query: 101 ALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           A+ +F+K++ +     D F+FP ++KA   +     G  +HG+  K+G   D FV   L+
Sbjct: 14  AIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALI 73

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE---P 216
            MYG  G +  A  +F  M  R++V W+ +I G+ +NG   +  ++  EM M+  E   P
Sbjct: 74  AMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEM-MAGEEGLLP 132

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           D   L  +L  C+R  ++  G  +H   +   ++ D  + ++L+ MY+ CG +  A+ LF
Sbjct: 133 DIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLF 192

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           DK   KN V    M+ G    G       IF                         EA  
Sbjct: 193 DKNNRKNAVSWNTMIGGLCTKG------YIF-------------------------EAFN 221

Query: 337 LFNEMQVC-GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           LF EMQ+   ++ ++VT+L+++ AC  +  L   + +H Y  ++ F  D  V N  +  Y
Sbjct: 222 LFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAY 281

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           AKCG L  A  VF  M  + V SW ++I   A +GD R AL  + +M    + P+  T  
Sbjct: 282 AKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIG 341

Query: 456 GVLYACSHAGLVDEGREI 473
            +L A +H   +  G+E+
Sbjct: 342 SLLLASAHLKSLRYGKEV 359



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 195/426 (45%), Gaps = 21/426 (4%)

Query: 13  LPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALS 72
           LP    IS   SL   K+ H   ++    +        +L+   F         L  A  
Sbjct: 243 LPACLEISQLRSL---KELHGYSIRHGFQYD-------ELVANGFVAAYAKCGMLICAER 292

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F  +        N  I   + +  P+ AL ++++M   GL  D F+   +L A A  + 
Sbjct: 293 VFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKS 352

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L  G +VHG   + G   D F+   L+ +Y  CG+   ARL+FD M  +  V W+ MI G
Sbjct: 353 LRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISG 412

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y QNGL ++ L LF ++     +P ++ +  +L ACS+   L  G+  H + +   +  D
Sbjct: 413 YSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMED 472

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             +  + I MYA  GC+  ++ +FD +  K+L    A+++ Y   G  E++  +F++M +
Sbjct: 473 VFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRK 532

Query: 313 ----KDLICWSAMISGYAENNHPQEALKLFNEMQ-VCGMKPDKVTMLSVISACAHLGVLD 367
                D   +  +++  +     +E LK FNEMQ   G++P       V+      G LD
Sbjct: 533 VGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLD 592

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMIN 424
            A R+   + +     D RV ++++      G LE  + V E++     +NV ++ S+ N
Sbjct: 593 DALRLVHEMPEQP---DSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSN 649

Query: 425 AFAIHG 430
            +A  G
Sbjct: 650 LYAGSG 655



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 157/348 (45%), Gaps = 45/348 (12%)

Query: 195 QNGLFDEVLNLFEEMKM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
           +N L+ + +++F ++   +    D      ++ AC+ + +   GE +H  +I   + LD 
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDV 66

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
            + + LI M                               Y + G V+ A  +F  M  +
Sbjct: 67  FVGNALIAM-------------------------------YGKFGFVDAAVKVFHYMPVR 95

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVC--GMKPDKVTMLSVISACAHLGVLDQAQR 371
           +L+ W+++ISG++EN   ++   +  EM     G+ PD  T+++V+  CA    +    R
Sbjct: 96  NLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIR 155

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           IH    K     D+RVNN+++DMY+KCG L  A+ +F++  R+N +SW +MI      G 
Sbjct: 156 IHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGY 215

Query: 432 ARNALIFFNKMK-DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH- 489
              A   F +M+  E I+ N VT + +L AC     +   +E+       Y+I   +++ 
Sbjct: 216 IFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHG-----YSIRHGFQYD 270

Query: 490 ---YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
                  V  + +  +L  A  +  +M     V  W +L+  C  +G+
Sbjct: 271 ELVANGFVAAYAKCGMLICAERVFYSME-TKTVNSWNALIGGCAQNGD 317


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/519 (41%), Positives = 313/519 (60%), Gaps = 30/519 (5%)

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            F  M    V P++     +L AC+   G+   G   H   +    A D ++ +TLI MY
Sbjct: 113 FFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMY 172

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
           +  G                              G + DAR +FD+M ++  + WSAMI 
Sbjct: 173 SCFG-----------------------------GGFLGDARNVFDRMPKESAVTWSAMIG 203

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           GY       +A+ LF EMQ  G++ D+VT++ V++A   LG L+ A+ +  ++++   G 
Sbjct: 204 GYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGK 263

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
            + + NA+ID  AKCG ++ A  VFE M++R+V+SWTS+I+A A+ G  + A+  F +MK
Sbjct: 264 SVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMK 323

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
              + P+ V FIGVL ACSHAG+VDEG   F +M  EY I PK EHYGCMVD+FGRA ++
Sbjct: 324 VAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMV 383

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563
             A+E V TMP  PN VIW SL++ACR HG +EL E   + LL   P H+   ++LSN++
Sbjct: 384 ERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVF 443

Query: 564 AKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVI 623
           A  +RW++  E+R+ M +RGI K   CS +E++ EV+EF+  D SH Q   IY  + E+ 
Sbjct: 444 ALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMA 503

Query: 624 SELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCE 683
            EL+  G++      L+DL++E+K   + WHSEKLA+ + L+ +   + +R+VKNLRVC 
Sbjct: 504 RELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCS 563

Query: 684 DCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           DCH  IK +S+VY REIV+RDR+RFH +KDG CSCKD+W
Sbjct: 564 DCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 208/427 (48%), Gaps = 57/427 (13%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           +++ S+ T + Q+ A +LK   S    NSL+L  L   F+   +   +L   L      P
Sbjct: 29  LAASSTPTSLLQSVAFLLK---SGLHANSLVLTRL---FAASASAAPALLDPLVTALLRP 82

Query: 79  APP--SRVSNKFIRAISWSHRPKHALKV-----FLKMLNEGLTIDRFSFPPILKAIARAE 131
           + P  + ++N  IRA + S  P H+L++     F  ML   +  ++F+FP +LKA A   
Sbjct: 83  SVPLDAFLANTLIRAHATS--PIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALP 140

Query: 132 GLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK--ILDARLMFDKMSYRDIVPWSV 188
           G  + G+Q H    K GF +D +V   L+ MY   G   + DAR +FD+M     V WS 
Sbjct: 141 GSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSA 200

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI GY + GL  + ++LF EM+ + V+ DE+ +  +L+A +  G L     V  F+    
Sbjct: 201 MIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREG 260

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           +     L + LI   A CG +D A  +F+ +  +++V  T+++   +  G+         
Sbjct: 261 IGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGR--------- 311

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
                                  +EA+++F EM+V G+ PD V  + V++AC+H G++D+
Sbjct: 312 ----------------------GKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDE 349

Query: 369 AQRIHLYID--KNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMI 423
                 Y D  K  +G + ++ +   ++DM+ + G +E A E    M  + N + W S++
Sbjct: 350 GCG---YFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLV 406

Query: 424 NAFAIHG 430
           +A   HG
Sbjct: 407 SACRAHG 413


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/577 (37%), Positives = 359/577 (62%), Gaps = 13/577 (2%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D    T ++ +      I DA+  FD+M  RD+V W+ M+    + G  +     F++M 
Sbjct: 84  DLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAMLAANAERGQMENARETFDQMP 143

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
             N+       + +LSA  R+G++     V + + + N+       + ++T Y+  G + 
Sbjct: 144 ERNL----FSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVA----WTAMLTGYSLSGDVV 195

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            AK  FD +  ++L+  TAM+S Y+  G +   R IF +M E+DLI W+ M++   EN+ 
Sbjct: 196 RAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDL 255

Query: 331 PQEALKLFNEM-QVC----GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385
            +E+ +LF+ M + C    GM P++VT ++++ AC+ LG L + ++IH  + +  F  DL
Sbjct: 256 LEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDL 315

Query: 386 RVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDE 445
            V+NA+++ Y +CG+L  A+ VF+ MRRR+VISW+SMI+AFA  G    A+  +++M  E
Sbjct: 316 VVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSE 375

Query: 446 SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505
              P+ + FI VL+ACS++G+V+   + F S+  +  + P  EHY CMVD+ GRA  LR+
Sbjct: 376 GTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRD 435

Query: 506 ALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565
           A +L+  MPF P  +++ ++++AC+++ ++E  E AA+ + +LDP++    + L+NIY+ 
Sbjct: 436 AEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSA 495

Query: 566 DKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISE 625
            KR +D   +RK M+ERGI K+  CS IE+ + V+EF+  D+ H Q D+IY ++  +  +
Sbjct: 496 AKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQ 555

Query: 626 LKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDC 685
           +K AGY  D    L D+E++EK  ++ +HSEKLA+ +GLIS+   + +RIVKNLRVC DC
Sbjct: 556 MKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLRVCSDC 615

Query: 686 HNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           H   K++SKV  REI++RD  RFHH+++G+CSC DYW
Sbjct: 616 HAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 179/412 (43%), Gaps = 81/412 (19%)

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           M+G  G +  AR +FD ++ RD   W +M+  Y ++G       +F+ M           
Sbjct: 1   MFGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMP---------- 50

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
                         S G                   + L++ +A  G  + AK LFD + 
Sbjct: 51  ------------RWSLGS-----------------WTALLSAFALSGHHEEAKTLFDTMQ 81

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            ++L+  T M++  +    +EDA+  FDQM E+DL+ W+AM++  AE    + A + F++
Sbjct: 82  ERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAMLAANAERGQMENARETFDQ 141

Query: 341 MQVCGMKPDK--VTMLSVISACAHLGVLDQAQRI-----------------------HLY 375
           M      P++   +  S++SA    G +  A R+                        + 
Sbjct: 142 M------PERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGDVV 195

Query: 376 IDKNAFGG----DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
             K AF      DL    A++  YA  G L   RE+F+RM  R++ISW +M+ A   +  
Sbjct: 196 RAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDL 255

Query: 432 ARNALIFFNKMK-----DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
              +   F++M       + + PN VTFI +L ACS  G + EGR+I A++  E      
Sbjct: 256 LEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVA-ERGFDTD 314

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
                 +V+ +GR   L +A  + + M    +V+ W S+++A    G ++ A
Sbjct: 315 LVVSNALVNFYGRCGALGDAKIVFDGMR-RRDVISWSSMISAFAQRGRVDEA 365



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 143/291 (49%), Gaps = 22/291 (7%)

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
           M+   GC++ A+ +FD +  ++      M+S Y+R+G + +A+ +FD+M    L  W+A+
Sbjct: 1   MFGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTAL 60

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF 381
           +S +A + H +EA  LF+ MQ    + D +    +++  A    ++ A+    Y      
Sbjct: 61  LSAFALSGHHEEAKTLFDTMQ----ERDLIAWTIMLTVLATFSNIEDAK----YHFDQMP 112

Query: 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNK 441
             DL    A++   A+ G +E+ARE F++M  RN+ SWTS+++A+   GD + A   F+ 
Sbjct: 113 ERDLVAWTAMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDS 172

Query: 442 MKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501
           M +     N V +  +L   S +G V   +  F SM     I      +  M+  +    
Sbjct: 173 MPEW----NLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIA-----WTAMLSAYAFNG 223

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
            LR   E+ + MP   +++ W +++AA   +  +E     +K+L    P H
Sbjct: 224 HLRYTREIFQRMP-ERDLISWATMVAALVENDLLE----ESKELFDRMPRH 269



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 147/320 (45%), Gaps = 21/320 (6%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKM-----LNEGLTIDRFSFP 121
           L Y   IF ++P          + A+  +   + + ++F +M     L++G+T +R +F 
Sbjct: 225 LRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFI 284

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
            +L A +    L EG ++H    + GF +D  V   LV  YG CG + DA+++FD M  R
Sbjct: 285 TLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRR 344

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL-SYGEAV 240
           D++ WS MI  + Q G  DE + L+  M      PD+++   +L ACS +G + + G+  
Sbjct: 345 DVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFF 404

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL-KNLVVSTAMVSG---YSR 296
              + D  V       + ++ +    G +  A+ L   +      ++   M+S    Y+ 
Sbjct: 405 RSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTD 464

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
             + E A  +  ++  ++   +  + + Y+    P++A ++   M+  G+K         
Sbjct: 465 VERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKK------- 517

Query: 357 ISACAHLGVLDQAQRIHLYI 376
              C+ + VLD   R+H +I
Sbjct: 518 -PGCSWIEVLD---RVHEFI 533


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/603 (36%), Positives = 338/603 (56%), Gaps = 32/603 (5%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +  I+ A A+ + L     +H   ++     D F+   L+ MY  CG + DAR +FDKM 
Sbjct: 63  YHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMP 122

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            RD+V W+ +I GY QN +  E + L  +M  +   P+    + +L A    G  S GE 
Sbjct: 123 SRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQ 182

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H   +  N   D ++ S L+ MYA                               R  Q
Sbjct: 183 MHALAVKYNWDEDVYVGSALLDMYA-------------------------------RCEQ 211

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           ++ A ++FD++V K+ + W+A+I+G+A     +  L  F EMQ  G      T  S+ SA
Sbjct: 212 MDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSA 271

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
            A +G L+Q + +H ++ K+       V N ++ MYAK GS+  AR+VF+RM +R++++W
Sbjct: 272 FARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTW 331

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            +M+ A A +G  + A+  F +++   I  N +TF+ VL ACSH GLV EG+  F  M  
Sbjct: 332 NTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYF-DMMK 390

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
           +YN+ P+ +HY   VDL GRA LL+EAL  V  MP  P   +WG+L+ ACR+H   ++ +
Sbjct: 391 DYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQ 450

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
           +AA  + +LDPD  G  VLL NIYA   +W D   +RK MK  G+ KE ACS +++ N V
Sbjct: 451 YAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSV 510

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
           + F+  D +H ++  IY    E+   +K AGYVP+    L+ + ++E+   + +HSEK+A
Sbjct: 511 HMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIA 570

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           L + LI+    + IRI+KN+R+C DCH+  K VSKV+ REIV+RD  RFHH+ +G CSC 
Sbjct: 571 LAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCG 630

Query: 720 DYW 722
           DYW
Sbjct: 631 DYW 633



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 189/416 (45%), Gaps = 36/416 (8%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           I++C+   ++    A    LS S  + ++ LL  L+  +        ++  A  +F ++P
Sbjct: 67  IAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMY----CKCGAVSDARHVFDKMP 122

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
           +         I   + ++ P  A+ +   ML      + F+F  +LKA     G   G Q
Sbjct: 123 SRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQ 182

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H L  K  +  D +V + L+ MY  C ++  A ++FD++  ++ V W+ +I G+ +   
Sbjct: 183 MHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKAD 242

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
            +  L  F EM+ +         S + SA +R G L  G  VH  +I +   L A + +T
Sbjct: 243 GETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNT 302

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           ++ MYA  G M  A+ +FD+                               M ++DL+ W
Sbjct: 303 MLGMYAKSGSMVDARKVFDR-------------------------------MDKRDLVTW 331

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           + M++  A+    +EA+  F E++ CG++ +++T LSV++AC+H G++ + +     +  
Sbjct: 332 NTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKD 391

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAR-EVFERMRRRNVISWTSMINAFAIHGDAR 433
                ++    + +D+  + G L+ A   VF+         W +++ A  +H +A+
Sbjct: 392 YNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAK 447



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 152/320 (47%), Gaps = 33/320 (10%)

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           + P   +   I++AC++  NL+   A+H  +  + +A DA L ++LI MY  CG      
Sbjct: 56  LAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGA----- 110

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
                                     V DAR +FD+M  +D++ W+ +I+GYA+N  P E
Sbjct: 111 --------------------------VSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAE 144

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
           A+ L  +M     +P+  T  S++ A    G     +++H    K  +  D+ V +A++D
Sbjct: 145 AIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLD 204

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
           MYA+C  ++ A  VF+R+  +N +SW ++I  FA   D    L+ F +M+         T
Sbjct: 205 MYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFT 264

Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
           +  +  A +  G +++GR + A +         +     M+ ++ ++  + +A ++ + M
Sbjct: 265 YSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVG-NTMLGMYAKSGSMVDARKVFDRM 323

Query: 514 PFAPNVVIWGSLMAACRVHG 533
               ++V W +++ A   +G
Sbjct: 324 D-KRDLVTWNTMLTALAQYG 342


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/680 (34%), Positives = 368/680 (54%), Gaps = 67/680 (9%)

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           FS  P+  S ++ +F    S  H     LK      +  +  +   F  +L++      L
Sbjct: 14  FSTNPSSGSELTAEFTNLCSKGH-----LKQAFDRFSSHIWSEPSLFSHLLQSCISENSL 68

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI------------------------- 168
             G Q+H L    G  SD F+   L+ +Y  CG++                         
Sbjct: 69  SLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGY 128

Query: 169 ------LDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
                 + AR MFD+M  R++  W+ M+ G  Q    +E L LF  M      PDE  L 
Sbjct: 129 FRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALG 188

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            +L  C+    L  G  VH ++                     CG               
Sbjct: 189 SVLRGCAGLRALVAGRQVHGYV-------------------RKCG------------FEF 217

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           NLVV +++   Y + G + +   +   M  ++++ W+ +I+G A+N +P+E L  +N M+
Sbjct: 218 NLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMK 277

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
           + G +PDK+T +SVIS+C+ L  L Q Q+IH  + K      + V +++I MY++CG LE
Sbjct: 278 MAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLE 337

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            + +VF      +V+ W+SMI A+  HG    A+  FN+M+ E ++ N VTF+ +LYACS
Sbjct: 338 YSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACS 397

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
           H GL ++G + F  M  +Y + P+ EHY CMVDL GR   + EA  L+ +MP   +V+ W
Sbjct: 398 HCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITW 457

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582
            +L++AC++H + E+A   ++++ +LDP      VLLSNI+A DKRW DV ++RK+M++R
Sbjct: 458 KTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDR 517

Query: 583 GILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDL 642
            + KE   S +E+ N++++F   D+SH ++ +I   L E+ SE+K  GYVPDI S L D+
Sbjct: 518 KLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLHDM 577

Query: 643 EDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVI 702
           + E+K   ++ HSEKLA+ + L+ +   + IR++KNLRVC DCH  IK +S++  REI++
Sbjct: 578 DVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNREIIV 637

Query: 703 RDRTRFHHYKDGVCSCKDYW 722
           RD +RFHH+K+G CSC DYW
Sbjct: 638 RDSSRFHHFKNGRCSCGDYW 657



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 172/362 (47%), Gaps = 33/362 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P       N  +  +      +  L +F +M   G   D F+   +L+  A 
Sbjct: 137 ARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAG 196

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L+ G QVHG   K GF  +  V + L  MY  CG + +   +   M  +++V W+ +
Sbjct: 197 LRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTL 256

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G  QNG  +EVL+ +  MKM+   PD++    ++S+CS    L  G+ +H  +I    
Sbjct: 257 IAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGA 316

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
           +L   + S+LI+MY+ CGC++ +  +F +    ++V  ++M++ Y   G+          
Sbjct: 317 SLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGR---------- 366

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                                  EA+ LFN+M+   ++ + VT LS++ AC+H G+ ++ 
Sbjct: 367 ---------------------GVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKG 405

Query: 370 QRIH-LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFA 427
            +   L ++K      L     ++D+  + GS+E A  +   M  + +VI+W ++++A  
Sbjct: 406 IKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACK 465

Query: 428 IH 429
           IH
Sbjct: 466 IH 467


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/545 (40%), Positives = 322/545 (59%), Gaps = 30/545 (5%)

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           M +   V W+ +I  Y   G   E + +      S + PD     ++L+AC+R  +L  G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
           EAV                               A    ++ + +++ V+TA +  Y + 
Sbjct: 61  EAV------------------------------WAAARQEEGVAESVFVATAALDLYVKC 90

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           G++E AR +FD+M  +D + W AM+ GYA N HP+EAL LF  MQ+ G KPD  T++  +
Sbjct: 91  GEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGAL 150

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
           SAC  LG LD  ++    +  +   G+  +  A+IDMYAKCGS   A  VF++M  R++I
Sbjct: 151 SACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDII 210

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
            W +MI    + G  + A     +MK   +  N  TFIG+L +C+H GLV++GR+ F +M
Sbjct: 211 VWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNM 270

Query: 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537
           T+ Y I P+ EHYGCMVDLF RA LL EA +L+  MP   N V+WG+L+  C++H   +L
Sbjct: 271 THVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADL 330

Query: 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNN 597
           AE A KQL++L+P + G  V+LSNIY+   RW+D  +LR  MK +GI K  A S +E++ 
Sbjct: 331 AEHALKQLIRLEPWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGIEKVPASSWVELDG 390

Query: 598 EVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEK 657
           +V++F   D SH  +D+IY KL+E+  E+K  GY P     + D+E+EEK   ++ HSEK
Sbjct: 391 KVHKFYVGDDSHPLSDKIYAKLDELGMEMKAMGYEPTTEVVMFDVENEEKENTLVHHSEK 450

Query: 658 LALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCS 717
           +A+ + LI+++    IR+ KNLRVC DCH+ IKL+S++  REIV+RD  RFH ++DG CS
Sbjct: 451 IAIAFSLITTEPGETIRVTKNLRVCTDCHSAIKLISRITCREIVVRDNNRFHCFRDGHCS 510

Query: 718 CKDYW 722
           C DYW
Sbjct: 511 CNDYW 515



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 153/359 (42%), Gaps = 34/359 (9%)

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
           +P P +      I A   +     A+ V  +    G+  D F+   +L A AR   L  G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 137 MQVHGLGTKL-GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
             V     +  G     FV T  + +Y  CG++  AR +FD+M  RD V W  M+ GY  
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           NG   E L+LF  M+M   +PD   +   LSAC+R G L  G      +  + V  +  L
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVL 180

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            + LI MYA CG    A  +F ++L ++++V                             
Sbjct: 181 GTALIDMYAKCGSTSEAWMVFQQMLERDIIV----------------------------- 211

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL-DQAQRIHL 374
             W+AMI G     H + A  L  +M+  G+K +  T + ++ +C H G++ D  Q  H 
Sbjct: 212 --WNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHN 269

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-RNVISWTSMINAFAIHGDA 432
                     +     ++D++++ G LE A ++   M    N + W +++    IH +A
Sbjct: 270 MTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNA 328



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 125/285 (43%), Gaps = 9/285 (3%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A S+F ++    +      +   + +  P+ AL +F  M  EG   D ++    L A  R
Sbjct: 96  ARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTR 155

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G Q  G+        +P + T L+ MY  CG   +A ++F +M  RDI+ W+ M
Sbjct: 156 LGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAM 215

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDNN 248
           I G    G       L  +MK S V+ ++     +L +C+  G ++ G +  H       
Sbjct: 216 ILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYR 275

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLF-DKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
           ++        ++ +++  G ++ A  L  D  +L N VV  A++ G       + A    
Sbjct: 276 ISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHAL 335

Query: 308 DQMVEKDLICWSA----MISG-YAENNHPQEALKLFNEMQVCGMK 347
            Q++   L  W++    M+S  Y+ +   ++A KL  EM+  G++
Sbjct: 336 KQLIR--LEPWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGIE 378


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/681 (35%), Positives = 381/681 (55%), Gaps = 25/681 (3%)

Query: 42  HHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHA 101
           ++S N+LL  L ++S         SL  A  +F ++P   S   N  I     SH     
Sbjct: 100 NYSYNTLLHALAVSS---------SLADARGLFDEMPVRDSVTYNVMIS----SHANHGL 146

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM 161
           + +     +     D  S+  +L A  R   + E   +    T+     D      L+  
Sbjct: 147 VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW----DAISWNALMSG 202

Query: 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221
           Y   GK+ +AR +FD+M  RD+V W++M+ GY + G   E   LF+   + +V       
Sbjct: 203 YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTW 258

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           + ++S  ++ G L     V + + + N    A   + ++  Y     MD AK LF+ +  
Sbjct: 259 TAVVSGYAQNGMLEEARRVFDAMPERN----AVSWNAMVAAYIQRRMMDEAKELFNMMPC 314

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           +N+     M++GY++AG +E+A+ +FD M +KD + W+AM++ Y++    +E L+LF EM
Sbjct: 315 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
             CG   ++     V+S CA +  L+   ++H  + +  +G    V NA++ MY KCG++
Sbjct: 375 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNM 434

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
           E AR  FE M  R+V+SW +MI  +A HG  + AL  F+ M+  S  P+ +T +GVL AC
Sbjct: 435 EDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494

Query: 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI 521
           SH+GLV++G   F SM +++ +  K EHY CM+DL GRA  L EA +L++ MPF P+  +
Sbjct: 495 SHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTM 554

Query: 522 WGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581
           WG+L+ A R+H   EL   AA+++ +L+P++ G  VLLSNIYA   +W+D  ++R  M+E
Sbjct: 555 WGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEE 614

Query: 582 RGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVD 641
           RG+ K    S IE+ N+V+ F   D  H + ++IY  L ++   +K AGYV      L D
Sbjct: 615 RGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHD 674

Query: 642 LEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIV 701
           +E+EEK  ++ +HSEKLA+ YG+++      IR++KNLRVC DCHN  K +S +  R I+
Sbjct: 675 VEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLIL 734

Query: 702 IRDRTRFHHYKDGVCSCKDYW 722
           +RD  RFHH++ G CSC DYW
Sbjct: 735 LRDSNRFHHFRGGSCSCGDYW 755



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 186/389 (47%), Gaps = 30/389 (7%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D +    L+        + DAR +FD+M  RD V ++VMI  +  +GL     + F+   
Sbjct: 99  DNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAP 158

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
               E D +  + +L+A  R G +         + ++    DA   + L++ Y   G M 
Sbjct: 159 ----EKDAVSWNGMLAAYVRNGRVEEARG----LFNSRTEWDAISWNALMSGYVQWGKMS 210

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            A+ LFD++  +++V    MVSGY+R G + +AR +FD    +D+  W+A++SGYA+N  
Sbjct: 211 EARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGM 270

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
            +EA ++F+ M     + + V+  ++++A     ++D+A+ +   +       ++   N 
Sbjct: 271 LEEARRVFDAMP----ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR----NVASWNT 322

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           ++  YA+ G LE A+ VF+ M +++ +SW +M+ A++  G +   L  F +M       N
Sbjct: 323 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVN 382

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNE-YNIPPKYEHYGCMVD-----LFGRANLLR 504
              F  VL  C+    ++ G ++   +    Y +       GC V      ++ +   + 
Sbjct: 383 RSAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFVGNALLAMYFKCGNME 435

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHG 533
           +A    E M    +VV W +++A    HG
Sbjct: 436 DARNAFEEME-ERDVVSWNTMIAGYARHG 463



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 163/349 (46%), Gaps = 25/349 (7%)

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
            G++ DA  +F  M  R    ++ M+ GY  NG      +LF  +      PD    + +
Sbjct: 51  AGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP----RPDNYSYNTL 106

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L A + + +L+        + D     D+   + +I+ +AN G + +A+  FD    K+ 
Sbjct: 107 LHALAVSSSLADARG----LFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDA 162

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
           V    M++ Y R G+VE+AR +F+   E D I W+A++SGY +     EA +LF+ M   
Sbjct: 163 VSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMP-- 220

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
               D V+   ++S  A  G + +A+R+       A   D+    A++  YA+ G LE A
Sbjct: 221 --GRDVVSWNIMVSGYARRGDMVEARRLF----DAAPVRDVFTWTAVVSGYAQNGMLEEA 274

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
           R VF+ M  RN +SW +M+ A+        A   FN M   ++     ++  +L   + A
Sbjct: 275 RRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV----ASWNTMLTGYAQA 330

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
           G+++E + +F +M  +  +      +  M+  + +     E L+L   M
Sbjct: 331 GMLEEAKAVFDTMPQKDAVS-----WAAMLAAYSQGGCSEETLQLFIEM 374



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 155/336 (46%), Gaps = 22/336 (6%)

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           +EP+ +  +K ++A  RAG ++  E +   +   + +      + ++  Y+  G + +A 
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTST----YNAMLAGYSANGRLPLAA 89

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
            LF  +   +      ++   + +  + DAR +FD+M  +D + ++ MIS +A +     
Sbjct: 90  SLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSL 149

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
           A   F+       + D V+   +++A    G +++A+   L+  +  +  D    NA++ 
Sbjct: 150 ARHYFD----LAPEKDAVSWNGMLAAYVRNGRVEEAR--GLFNSRTEW--DAISWNALMS 201

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
            Y + G +  ARE+F+RM  R+V+SW  M++ +A  GD   A   F+      +     T
Sbjct: 202 GYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FT 257

Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
           +  V+   +  G+++E R +F +M     +      +  MV  + +  ++ EA EL   M
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKELFNMM 312

Query: 514 PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           P   NV  W +++      G +E A+     + Q D
Sbjct: 313 P-CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKD 347


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/405 (50%), Positives = 286/405 (70%)

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W++MI+GY +    +EA+ LF +M+  G+K ++VT+++V++ACA LG LD   RIH Y +
Sbjct: 195 WTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSN 254

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           ++ F  ++R++N +IDMY KCG LE A +VFE M  R V+SW++MI   A+HG A  AL 
Sbjct: 255 RHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALR 314

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F+ M    I+PNGVTFIG+L+ACSH GL+ EGR  FASMT +Y I P+ EHYGCMVDL 
Sbjct: 315 LFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLL 374

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557
            RA LL EA E +  MP  PN V+WG+L+ ACRVH  +E+AE A K LL+LDP +DG  V
Sbjct: 375 SRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYV 434

Query: 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYE 617
           +LSNIYA+  RW+D   +RK MK+R + K    S I ++  V+EF+  + SH  T+QI++
Sbjct: 435 VLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQ 494

Query: 618 KLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVK 677
           +  E++ E++  GYVP+    L+D+E+ EK + +  HSEKLAL +GL+++  ++ IRI+K
Sbjct: 495 RWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMK 554

Query: 678 NLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           NLR+CEDCH+  KL+S +  REIV+RDR RFH + D  CSC+DYW
Sbjct: 555 NLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 599



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 188/413 (45%), Gaps = 79/413 (19%)

Query: 28  MKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA--PPSRVS 85
           ++Q HAQI+K        N+ L  L LT   L      S +YA  IF  +    P + V 
Sbjct: 77  LRQVHAQIIK-------TNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVW 129

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  ++A++    P  A+ +F ++    +  D F+   +L+A      L  G  +HG+  K
Sbjct: 130 NSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEK 189

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
           +GF S                                   W+ MI GY Q G   E ++L
Sbjct: 190 VGFRS-----------------------------------WTSMIAGYVQCGKAKEAIHL 214

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           F +M+ + V+ +E+ +  +L+AC+  G L  G  +HE+   +    +  + +TLI MY  
Sbjct: 215 FAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVK 274

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
           C                               G +E+A  +F++M E+ ++ WSAMI G 
Sbjct: 275 C-------------------------------GCLEEACKVFEEMEERTVVSWSAMIGGL 303

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385
           A +   +EAL+LF++M   G++P+ VT + ++ AC+H+G++ + +R    + ++ +G   
Sbjct: 304 AMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRD-YGIIP 362

Query: 386 RVNN--AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNA 435
           ++ +   ++D+ ++ G L  A E    M  + N + W +++ A  +H +   A
Sbjct: 363 QIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMA 415



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 102/239 (42%), Gaps = 41/239 (17%)

Query: 303 ARLIFDQMVEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           A+ IF + VEK   +   W++ +   AE + P +A+ LF  ++   + PD  T  SV+ A
Sbjct: 112 AQQIF-KCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRA 170

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           C +L  L   + +H  ++K  F                                    SW
Sbjct: 171 CLNLLDLSNGRILHGVVEKVGFR-----------------------------------SW 195

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           TSMI  +   G A+ A+  F KM++  +  N VT + VL AC+  G +D G  I    +N
Sbjct: 196 TSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIH-EYSN 254

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
            +           ++D++ +   L EA ++ E M     VV W +++    +HG  E A
Sbjct: 255 RHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMIGGLAMHGRAEEA 312


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/661 (35%), Positives = 371/661 (56%), Gaps = 12/661 (1%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIA 128
           A  +F + P   + V    I   +   R    ++ F +ML EG  T + F    +++  A
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
               +  G +VHG   + G   D  +   ++ MY  CG+   AR +F  M+ RD V W++
Sbjct: 124 GMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNI 183

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
            I    Q+G     + LF+E  +     D    + I+S   R+G+ +   +    +    
Sbjct: 184 AIGACIQSGDILGSMQLFDESPLR----DTTSWNTIISGLMRSGHAADALSHLRRMAQAG 239

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL----VVSTAMVSGYSRAGQVEDAR 304
           V  + +  ST   +       D+ + L  +VL+  L     V ++++  Y + G +E A 
Sbjct: 240 VVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAA 299

Query: 305 LIFDQM--VEKDL-ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
            +FD    + +D+   WS M++GY +N   +EAL LF  M   G+  D+ T+ SV +ACA
Sbjct: 300 SVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACA 359

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
           ++G+++Q +++H  ++K  +  D  + +AI+DMYAKCG+LE AR +F+R   +N+  WTS
Sbjct: 360 NVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTS 419

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           M+ ++A HG  R A+  F +M  E + PN +T +GVL ACSH GLV EG   F  M  EY
Sbjct: 420 MLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEY 479

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
            I P  EHY C+VDL+GR+ LL +A   +E        ++W +L++ACR+H   E A+ A
Sbjct: 480 GIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLA 539

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
           +++L+QL+    G+ V+LSNIYA + +W D  ELR SM+ER + K+   S I + N V+ 
Sbjct: 540 SEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHT 599

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           F+  D SH Q+ +IY  L +++  LK  GY       + D+EDE++   + +HSEKLA+ 
Sbjct: 600 FVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKLAIA 659

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           +G+IS+   + +RI KNLRVCEDCH  IK +S    REIV+RD  RFHH+KD  CSC+D+
Sbjct: 660 FGIISTPSGTPLRIFKNLRVCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSCEDF 719

Query: 722 W 722
           W
Sbjct: 720 W 720



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 193/411 (46%), Gaps = 8/411 (1%)

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           LL G    G   +    + P  +  ++  +    +  DAR +FD+   R    W++ I G
Sbjct: 26  LLRGRAARGGSLEARLATVPHERASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISG 85

Query: 193 YFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
             + G + + +  F EM       P+  VL+ ++  C+  G++  G+ VH +++ N V L
Sbjct: 86  CARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHL 145

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           D  L + ++ MYA CG  + A+ +F  +  ++ V     +    ++G +  +  +FD+  
Sbjct: 146 DVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESP 205

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
            +D   W+ +ISG   + H  +AL     M   G+  +  T  +       L + D  ++
Sbjct: 206 LRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQ 265

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER---MRRRNVISWTSMINAFAI 428
           +H  +   A  GD  V ++++DMY KCG LE+A  VF+    + R    +W++M+  +  
Sbjct: 266 LHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQ 325

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN-EYNIPPKY 487
           +G    AL  F +M  E +  +  T   V  AC++ G+V++GR++   +    Y +    
Sbjct: 326 NGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPL 385

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
                +VD++ +   L +A  + +      N+ +W S++ +   HG+  +A
Sbjct: 386 A--SAIVDMYAKCGNLEDARSIFDR-ACTKNIAVWTSMLCSYASHGQGRIA 433


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/688 (35%), Positives = 377/688 (54%), Gaps = 76/688 (11%)

Query: 86  NKFIRAISWSHRPKHALKVFLKM---LNEGLTIDR---FSFPPILKAIARAEGLLEGMQV 139
           N  + A   S     AL +F KM   ++E  T +R    S   IL A    + + +  +V
Sbjct: 190 NSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEV 249

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
           HG   + G   D FV   L+  Y  CG + +A  +F+ M ++D+V W+ M+ GY Q+G F
Sbjct: 250 HGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNF 309

Query: 200 D-----------------------------------EVLNLFEEMKMSNVEPDEMVLSKI 224
                                               E LN+F +M  S   P+ + +  +
Sbjct: 310 KAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISV 369

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           LSAC+  G  S G  +H +           L++ L+T+  + G  D           ++L
Sbjct: 370 LSACASLGAFSQGMEIHAY----------SLKNCLLTLDNDFGGED-----------EDL 408

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQ--MVEKDLICWSAMISGYAENNHPQEALKLFNEM- 341
           +V  A++  YS+    + AR IFD   + E++++ W+ MI G+A+     +ALKLF EM 
Sbjct: 409 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 468

Query: 342 -QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI------DKNAFGGDLRVNNAIIDM 394
            +  G+ P+  T+  ++ ACAHL  +   ++IH Y+      D +A+     V N +I+M
Sbjct: 469 SEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAY----FVANCLINM 524

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y+KCG +++AR VF+ M +++ ISWTSM+  + +HG    AL  F+KM+     P+ +TF
Sbjct: 525 YSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITF 584

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           + VLYACSH G+VD+G   F SM+ +Y + P+ EHY   +DL  R   L +A + V+ MP
Sbjct: 585 LVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMP 644

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
             P  V+W +L++ACRVH  +ELAE A  +L++++ ++DG+  L+SNIYA   RW+DV  
Sbjct: 645 MEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVAR 704

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           +R  MK+ GI K   CS ++       F   DRSH  + QIY  L  +I  +K  GYVP+
Sbjct: 705 IRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPE 764

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
            + AL D+++EEK  +++ HSEKLAL YGL+++     IRI KNLRVC DCH+    +SK
Sbjct: 765 TNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISK 824

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +   EIV+RD +RFHH+K+G CSC  YW
Sbjct: 825 IVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 158/494 (31%), Positives = 253/494 (51%), Gaps = 29/494 (5%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           YAL +  ++   P+   N  IR      R   A+ V  +ML  G  +D F+ P +LKA  
Sbjct: 69  YALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACG 128

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR---DIVP 185
                  G   HGL    GF S+ F+   LV MY  CG + +A ++FD+++ R   D++ 
Sbjct: 129 ELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVIS 188

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEM------KMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
           W+ ++  + ++      L+LF +M      K +N   D + +  IL AC     +   + 
Sbjct: 189 WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE 248

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           VH   I N   LD  + + LI  YA CG M+ A  +F+ +  K++V   AMV+GYS++G 
Sbjct: 249 VHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 308

Query: 300 VEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
            + A  +F  M    +  D++ W+A+I+GY++     EAL +F +M   G  P+ VT++S
Sbjct: 309 FKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIIS 368

Query: 356 VISACAHLGVLDQAQRIHLYIDKNA-------FGG---DLRVNNAIIDMYAKCGSLESAR 405
           V+SACA LG   Q   IH Y  KN        FGG   DL V NA+IDMY+KC S ++AR
Sbjct: 369 VLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 428

Query: 406 EVFER--MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDE--SIDPNGVTFIGVLYAC 461
            +F+   +  RNV++WT MI   A +GD+ +AL  F +M  E   + PN  T   +L AC
Sbjct: 429 SIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMAC 488

Query: 462 SHAGLVDEGREIFASMTNEYNI-PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           +H   +  G++I A +   +      Y    C+++++ +   +  A  + ++M    + +
Sbjct: 489 AHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMS-QKSAI 547

Query: 521 IWGSLMAACRVHGE 534
            W S+M    +HG 
Sbjct: 548 SWTSMMTGYGMHGR 561



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 197/444 (44%), Gaps = 90/444 (20%)

Query: 150 SDPFVQ-----TGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           S+PF+      TG+V  Y ACG    A L+ ++++    V W+++I  + + G  D  +N
Sbjct: 44  SEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAIN 103

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           +   M  +    D   L  +L AC    +   G A H  I  N    +  + + L+ MY+
Sbjct: 104 VSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYS 163

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK---DLICWSAM 321
            CG                                +E+A +IFD++ ++   D+I W+++
Sbjct: 164 RCG-------------------------------SLEEASMIFDEITQRGIDDVISWNSI 192

Query: 322 ISGYAENNHPQEALKLFNEMQ-VCGMKP-----DKVTMLSVISACAHLGVLDQAQRIHLY 375
           +S + ++++   AL LF++M  +   KP     D +++++++ AC  L  + Q + +H  
Sbjct: 193 VSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGN 252

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
             +N    D+ V NA+ID YAKCG +E+A +VF  M  ++V+SW +M+  ++  G+ + A
Sbjct: 253 AIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAA 312

Query: 436 LIFFNKMKDESID-----------------------------------PNGVTFIGVLYA 460
              F  M+ E+I                                    PN VT I VL A
Sbjct: 313 FELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSA 372

Query: 461 CSHAGLVDEGREIFA--------SMTNEYNIPPK-YEHYGCMVDLFGRANLLREALELVE 511
           C+  G   +G EI A        ++ N++    +    Y  ++D++ +    + A  + +
Sbjct: 373 CASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFD 432

Query: 512 TMPFAP-NVVIWGSLMAACRVHGE 534
            +P    NVV W  ++     +G+
Sbjct: 433 DIPLEERNVVTWTVMIGGHAQYGD 456



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 121/262 (46%), Gaps = 11/262 (4%)

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
           + T +V+ Y   G  + A L+ +++     + W+ +I  + +      A+ +   M   G
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
            + D  T+  V+ AC  L         H  I  N F  ++ + NA++ MY++CGSLE A 
Sbjct: 113 TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 172

Query: 406 EVFERMRRR---NVISWTSMINAFAIHGDARNALIFFNKM------KDESIDPNGVTFIG 456
            +F+ + +R   +VISW S+++A     +A  AL  F+KM      K  +   + ++ + 
Sbjct: 173 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 232

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           +L AC     V + +E+  +          +     ++D + +  L+  A+++   M F 
Sbjct: 233 ILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVG-NALIDAYAKCGLMENAVKVFNMMEF- 290

Query: 517 PNVVIWGSLMAACRVHGEIELA 538
            +VV W +++A     G  + A
Sbjct: 291 KDVVSWNAMVAGYSQSGNFKAA 312


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/734 (34%), Positives = 397/734 (54%), Gaps = 67/734 (9%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P K L++ T  A          KQ HA I+K   + HS N L+            +  + 
Sbjct: 17  PNKTLSVSTRQA----------KQLHAHIVKTKGTLHSDNILV--------LSLYSNLNL 58

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKH-ALKVFLKMLNEGLTIDRFSFPPILK 125
           L ++L +F+ +P+PP  ++   I     SH   H +   F  M +  +  +R  FP +LK
Sbjct: 59  LQHSLHLFNSLPSPPPPLAWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLK 118

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA---CGKILDA----------- 171
           A    +       +H    +LG  SD ++   L+  Y      GK+ D            
Sbjct: 119 ASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDC 178

Query: 172 -RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACS 229
            + +FD M  RD+V W+ +I G+ QNG++ E L++  EM K   ++PD   LS IL   +
Sbjct: 179 VKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFA 238

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
              +++ G+ +H + + N    D  + S+LI MYA C                       
Sbjct: 239 EHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCN---------------------- 276

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
                    ++E +   F  +  KD I W+++I+G  +N      L  F  M    +KP 
Sbjct: 277 ---------RLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPM 327

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
            V+  SVI ACAHL  L   +++H  I +  F  +  + ++++DMYAKCG+++ AR VF+
Sbjct: 328 AVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFD 387

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
           R+ +R++++WT++I   A+HG A +A+  F  M ++ + P  V F+ VL ACSHAGLVDE
Sbjct: 388 RIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDE 447

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAA 528
           G   F SM  ++ I P  EHY  + DL GRA  L EA + +  M    P   +W  L+AA
Sbjct: 448 GWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAA 507

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           CR H  +ELAE    +LL +D ++ GA VL+SNIY+  +RW+D   LR  M+++G+ K  
Sbjct: 508 CRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTP 567

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
           ACS IE+ N+V+ F+  D+SH   D+I + L+ ++ +++  GYV D +  L D+++E KR
Sbjct: 568 ACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDEELKR 627

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
           E++  HSE+LA+ YG+IS+   + IR++KN+RVC DCH  IK ++K+  REI +RD +RF
Sbjct: 628 ELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFITKIVGREITVRDNSRF 687

Query: 709 HHYKDGVCSCKDYW 722
           HH+K+G CSC DYW
Sbjct: 688 HHFKNGSCSCGDYW 701


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/566 (38%), Positives = 336/566 (59%), Gaps = 10/566 (1%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+G +    K+ DAR +FDKM  RD + W+ MI GY Q G   +   LF+E    +V   
Sbjct: 210 LMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV--- 266

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNN-VALDAHLQSTLITMYANCGCMDMAKGLF 276
               + ++S   + G L   +   + + + N V+ +A     +I  Y     MD+A+ LF
Sbjct: 267 -FTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNA-----MIAGYVQTKKMDIARELF 320

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           + +  +N+     M++GY + G +  AR  FD M ++D + W+A+I+GYA++ H +EAL 
Sbjct: 321 ESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALN 380

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           +F E++  G   ++ T    +S CA +  L+  ++IH    K  +G    V NA++ MY 
Sbjct: 381 MFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYF 440

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KCGS++ A + FE +  ++V+SW +M+  +A HG  R AL  F  MK   + P+ +T +G
Sbjct: 441 KCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVG 500

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           VL ACSH GL+D G E F SMT +Y + P  +HY CM+DL GRA  L EA +L+  MPF 
Sbjct: 501 VLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQ 560

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
           P    WG+L+ A R+HG  EL E AA+ + +++P + G  VLLSN+YA   RW D  ++R
Sbjct: 561 PGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMR 620

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
             M++ G+ K    S +E+ N+++ F   D SH + ++IY  L E+  +++  GYV    
Sbjct: 621 SKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTK 680

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
             L D+E+EEK  ++ +HSEKLA+ +G+++      IR++KNLRVCEDCH+ IK +SK+ 
Sbjct: 681 LVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIV 740

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
            R I++RD  RFHH+ +G CSC DYW
Sbjct: 741 GRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 154/310 (49%), Gaps = 20/310 (6%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           AR +FD+M  RD+  W+VM+ GY +N    +   LF+ M     E D +  + +LS  ++
Sbjct: 99  ARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMP----EKDVVSWNSLLSGYAQ 154

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
            G   Y +   E + DN    ++   + L+  Y + G ++ A  LF+     +L+    +
Sbjct: 155 NG---YVDEARE-VFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCL 210

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           + G+ R  ++ DAR +FD+M  +D I W+ MISGYA+     +A +LF+E        D 
Sbjct: 211 MGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPT----RDV 266

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
            T  +++S     G+LD+A+    + D+     ++   NA+I  Y +   ++ ARE+FE 
Sbjct: 267 FTWTAMVSGYVQNGMLDEAK---TFFDEMPEKNEVSY-NAMIAGYVQTKKMDIARELFES 322

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M  RN+ SW +MI  +   GD   A  FF+ M         V++  ++   + +G  +E 
Sbjct: 323 MPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDC----VSWAAIIAGYAQSGHYEEA 378

Query: 471 REIFASMTNE 480
             +F  +  +
Sbjct: 379 LNMFVEIKQD 388



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 155/318 (48%), Gaps = 39/318 (12%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D F  T +V  Y   G + +A+  FD+M  ++ V ++ MI GY Q    D    LFE M 
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMP 324

Query: 211 MSNV---------------------------EPDEMVLSKILSACSRAGNLSYGEAVHEF 243
             N+                           + D +  + I++  +++G+  Y EA++ F
Sbjct: 325 CRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGH--YEEALNMF 382

Query: 244 --IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL----KNLVVSTAMVSGYSRA 297
             I  +  +L+       ++  A+   +++ K +  + +         V  A+++ Y + 
Sbjct: 383 VEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKC 442

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           G +++A   F+ + EKD++ W+ M++GYA +   ++AL +F  M+  G+KPD++TM+ V+
Sbjct: 443 GSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVL 502

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERMR-RR 414
           SAC+H G+LD+       + K+ +G     +    +ID+  + G LE A+++   M  + 
Sbjct: 503 SACSHTGLLDRGTEYFYSMTKD-YGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQP 561

Query: 415 NVISWTSMINAFAIHGDA 432
              SW +++ A  IHG+ 
Sbjct: 562 GAASWGALLGASRIHGNT 579



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 172/373 (46%), Gaps = 63/373 (16%)

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           DI+ W+  I  + +NG  D  L++F  M                    R  ++SY     
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTM-------------------PRRSSVSY----- 83

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
                          + +I+ Y      ++A+ LFD++  ++L     M++GY R  ++ 
Sbjct: 84  ---------------NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLG 128

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
           DAR +FD M EKD++ W++++SGYA+N +  EA ++F+ M     + + ++   +++A  
Sbjct: 129 DARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISWNGLLAAYV 184

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
           H G +++A    L+  K+ +  DL   N ++  + +   L  AR +F++M  R+ ISW +
Sbjct: 185 HNGRIEEA--CLLFESKSDW--DLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNT 240

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI+ +A  G    A   F    DES   +  T+  ++      G++DE +  F  M    
Sbjct: 241 MISGYAQGGGLSQARRLF----DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM---- 292

Query: 482 NIPPKYE-HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
             P K E  Y  M+  + +   +  A EL E+MP   N+  W +++      G+I     
Sbjct: 293 --PEKNEVSYNAMIAGYVQTKKMDIARELFESMP-CRNISSWNTMITGYGQIGDIA---- 345

Query: 541 AAKQLLQLDPDHD 553
            A++   + P  D
Sbjct: 346 QARKFFDMMPQRD 358



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 154/325 (47%), Gaps = 22/325 (6%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A   F  +P          I   + S   + AL +F+++  +G +++R +F   L   A 
Sbjct: 347 ARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCAD 406

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G Q+HG   K+G+G+  FV   L+ MY  CG I +A   F+ +  +D+V W+ M
Sbjct: 407 IAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTM 466

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDNN 248
           + GY ++G   + L +FE MK + V+PDE+ +  +LSACS  G L  G E  +    D  
Sbjct: 467 LAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYG 526

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA-GQVE----DA 303
           V   +   + +I +    G ++ A+ L   +  +    S   + G SR  G  E     A
Sbjct: 527 VIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAA 586

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP----------DKVTM 353
            ++F +M  ++   +  + + YA +    +A K+ ++M+  G++           +K+  
Sbjct: 587 EMVF-KMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHT 645

Query: 354 LSVISACAHLGVLDQAQRIHLYIDK 378
            SV   C+H     + +RI+ Y+++
Sbjct: 646 FSV-GDCSH----PEKERIYAYLEE 665



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 118/261 (45%), Gaps = 57/261 (21%)

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
           + GL+D G E F  M  EY++ P  +HY CM+DL GR + L E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582
           G+L+ A R+HG  EL E AA+   ++ P + G                        M++ 
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSGI---------------------SKMRDV 857

Query: 583 GILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDL 642
           G+ K    S  E+ N+++ F       ++ + I              G++ ++   +   
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVGLFLSRERENI--------------GFLEELDLKMR-E 902

Query: 643 EDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKN-LRVCEDCHNFIKLVSKVYAREIV 701
            +EEK   + + SE LA   G+++       R++K  + VCEDC + IK +SK+  R I 
Sbjct: 903 REEEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLIT 962

Query: 702 IRDRTRFHHYKDGVCSCKDYW 722
           +RD  RF+   + +CSC +YW
Sbjct: 963 LRDSHRFN---ESICSCGEYW 980


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/610 (36%), Positives = 350/610 (57%), Gaps = 33/610 (5%)

Query: 115 IDRFS-FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
           IDR S    +L+  A+    + G   H    ++G   D      L+ MY  C  +  AR 
Sbjct: 40  IDRVSNLHYLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARK 99

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
            F++M  + +V W+ +I    QN    E L L  +M+      +E  +S +L  C+    
Sbjct: 100 KFNEMPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCA 159

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           +     +H F I    A+D+                             N  V TA++  
Sbjct: 160 ILECMQLHAFSI--KAAIDS-----------------------------NCFVGTALLHV 188

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           Y++   ++DA  +F+ M EK+ + WS+M++GY +N   +EAL +F   Q+ G   D   +
Sbjct: 189 YAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFMI 248

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER-MR 412
            S +SACA L  L + +++H    K+ FG ++ V++++IDMYAKCG +  A  VF+  + 
Sbjct: 249 SSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLE 308

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
            R+++ W +MI+ FA H  A  A+I F KM+     P+ VT++ VL ACSH GL +EG++
Sbjct: 309 VRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQK 368

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
            F  M  ++N+ P   HY CM+D+ GRA L+ +A +L+E MPF     +WGSL+A+C+++
Sbjct: 369 YFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKIY 428

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
           G IE AE AAK L +++P++ G  +LL+NIYA +K+W +V   RK ++E  + KER  S 
Sbjct: 429 GNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWDEVARARKLLRETDVRKERGTSW 488

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652
           IE+ N+++ F   +R+H Q D IY KL+ ++ ELK   Y  D  + L D+E+  K+ ++ 
Sbjct: 489 IEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVELKKLNYKVDTSNDLHDVEENRKQMLLR 548

Query: 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712
            HSEKLA+ +GL+   +D  IRI+KNLR+C DCH F+KLVSK  +REI++RD  RFHH+K
Sbjct: 549 HHSEKLAITFGLMCLPRDIPIRIIKNLRICGDCHTFMKLVSKSTSREIIVRDTNRFHHFK 608

Query: 713 DGVCSCKDYW 722
           DG CSC ++W
Sbjct: 609 DGFCSCGEFW 618



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 201/413 (48%), Gaps = 43/413 (10%)

Query: 29  KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY-YALSIFSQIPAPPSRVSNK 87
           +  HAQI+++         L + +L ++  +   +  SL   A   F+++P       N 
Sbjct: 63  RACHAQIIRIG--------LEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNT 114

Query: 88  FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
            I A++ +   + ALK+ ++M  EG   + F+   +L   A    +LE MQ+H    K  
Sbjct: 115 VIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAA 174

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207
             S+ FV T L+ +Y  C  I DA  MF+ M  ++ V WS M+ GY QNG  +E L +F 
Sbjct: 175 IDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFR 234

Query: 208 EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
             ++   + D  ++S  +SAC+    L  G+ VH     +    + ++ S+LI MYA CG
Sbjct: 235 NAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCG 294

Query: 268 CMDMAKGLFDKVL-LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
           C+  A  +F  VL ++++V+  AM+SG++R  +  +A ++F++M ++             
Sbjct: 295 CIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQR------------- 341

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDL 385
                             G  PD VT + V++AC+H+G+ ++ Q+   L + ++     +
Sbjct: 342 ------------------GFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSV 383

Query: 386 RVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIHGDARNALI 437
              + +ID+  + G +  A ++ ERM      S W S++ +  I+G+   A I
Sbjct: 384 LHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEI 436


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 252/721 (34%), Positives = 392/721 (54%), Gaps = 49/721 (6%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           Q T  L L T+  + S   L   +Q H   LKL           L L+LT  +       
Sbjct: 315 QVTFILMLATAVKVDS---LALGQQVHCMALKLG----------LDLMLTVSNSLINMYC 361

Query: 66  SLY---YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
            L    +A ++F  +        N  I  I+ +     A+ +F+++L  GL  D+++   
Sbjct: 362 KLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTS 421

Query: 123 ILKAIAR-AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
           +LKA +   EGL    QVH    K+   SD FV T L+  Y     + +A ++F++ ++ 
Sbjct: 422 VLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF- 480

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           D+V W+ M+ GY Q+    + L LF  M       D+  L+ +   C     ++ G+ VH
Sbjct: 481 DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVH 540

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
            + I +   LD  + S ++ MY  CG  DM+                             
Sbjct: 541 AYAIKSGYDLDLWVSSGILDMYVKCG--DMSA---------------------------- 570

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
            A+  FD +   D + W+ MISG  EN   + A  +F++M++ G+ PD+ T+ ++  A +
Sbjct: 571 -AQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASS 629

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
            L  L+Q ++IH    K     D  V  +++DMYAKCGS++ A  +F+R+   N+ +W +
Sbjct: 630 CLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNA 689

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           M+   A HG+ +  L  F +MK   I P+ VTFIGVL ACSH+GLV E  +   SM  +Y
Sbjct: 690 MLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDY 749

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
            I P+ EHY C+ D  GRA L+++A  L+E+M    +  ++ +L+AACRV G+ E  +  
Sbjct: 750 GIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRV 809

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
           A +LL+L+P    A VLLSN+YA   +W ++   R  MK   + K+   S IE+ N+++ 
Sbjct: 810 ATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHI 869

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           F+  DRS++QT+ IY K+ ++I ++K  GYVP+    LVD+E+EEK   + +HSEKLA+ 
Sbjct: 870 FVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVA 929

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           +GL+S+   + IR++KNLRVC DCHN +K ++KVY REIV+RD  RFH +KDG+CSC DY
Sbjct: 930 FGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDY 989

Query: 722 W 722
           W
Sbjct: 990 W 990



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/458 (27%), Positives = 217/458 (47%), Gaps = 47/458 (10%)

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM 161
           LK F  M+   +  D+ +F  +L    + + L  G QVH +  KLG      V   L+ M
Sbjct: 300 LKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINM 359

Query: 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221
           Y    K   AR +FD MS RD++ W+ +I G  QNGL  E + LF ++    ++PD+  +
Sbjct: 360 YCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTM 419

Query: 222 SKILSACSR-AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           + +L A S     LS  + VH   I  N   D+ + + LI  Y+   CM  A+ LF++  
Sbjct: 420 TSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-- 477

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
             N                              DL+ W+AM++GY +++   + LKLF  
Sbjct: 478 -HNF-----------------------------DLVAWNAMMAGYTQSHDGHKTLKLFAL 507

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M   G + D  T+ +V   C  L  ++Q +++H Y  K+ +  DL V++ I+DMY KCG 
Sbjct: 508 MHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGD 567

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           + +A+  F+ +   + ++WT+MI+    +G+   A   F++M+   + P+  T   +  A
Sbjct: 568 MSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKA 627

Query: 461 CSHAGLVDEGREIFASM-----TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
            S    +++GR+I A+      TN+  +         +VD++ +   + +A  L + +  
Sbjct: 628 SSCLTALEQGRQIHANALKLNCTNDPFVGTS------LVDMYAKCGSIDDAYCLFKRIEM 681

Query: 516 APNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPD 551
             N+  W +++     HGE +  L  F   + L + PD
Sbjct: 682 M-NITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPD 718



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 154/590 (26%), Positives = 271/590 (45%), Gaps = 77/590 (13%)

Query: 18  AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI 77
           AI+S S L   K THA+IL       +    L+  L++ +S       SL YA  +F ++
Sbjct: 49  AITS-SDLMLGKCTHARILTF---EENPERFLINNLISMYS----KCGSLTYARRVFDKM 100

Query: 78  PAPPSRVSNKFIRAISWS-----HRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           P       N  + A + S        + A  +F  +  + +   R +  P+LK    +  
Sbjct: 101 PDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGY 160

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           +      HG   K+G   D FV   LV +Y   GK+ + +++F++M YRD+V W++M+  
Sbjct: 161 VWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKA 220

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEM---VLSKILSACSRAG------NLSYGEAVHEF 243
           Y + G  +E ++L      S + P+E+   +L++I    S AG      N +   +V E 
Sbjct: 221 YLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSE- 279

Query: 244 IIDNNVALDAHLQS-----------------------TLITMYANC------------GC 268
           II  N  L  +L S                       T I M A               C
Sbjct: 280 IIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHC 339

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           M +  GL D +    L VS ++++ Y +  +   AR +FD M E+DLI W+++I+G A+N
Sbjct: 340 MALKLGL-DLM----LTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQN 394

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV-LDQAQRIHLYIDKNAFGGDLRV 387
               EA+ LF ++  CG+KPD+ TM SV+ A + L   L  ++++H++  K     D  V
Sbjct: 395 GLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFV 454

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
           + A+ID Y++   ++ A  +FER    ++++W +M+  +    D    L  F  M  +  
Sbjct: 455 STALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGE 513

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH----YGCMVDLFGRANLL 503
             +  T   V   C     +++G+++ A     Y I   Y+        ++D++ +   +
Sbjct: 514 RSDDFTLATVFKTCGFLFAINQGKQVHA-----YAIKSGYDLDLWVSSGILDMYVKCGDM 568

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELA--EFAAKQLLQLDPD 551
             A    +++P  P+ V W ++++ C  +GE E A   F+  +L+ + PD
Sbjct: 569 SAAQFAFDSIP-VPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPD 617


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/546 (40%), Positives = 329/546 (60%), Gaps = 40/546 (7%)

Query: 186 WSVMIDGYFQ-----NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           W+ +I  + Q      G     +++F  M+   V+PD      +L + +    L  G +V
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H  I+   +A+D  +Q++LI+MY                               S +G V
Sbjct: 87  HAQILRFGLAIDPFVQTSLISMY-------------------------------SSSGLV 115

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM---KPDKVTMLSVI 357
           + AR +F  M E+++I WS MI+GY      +EAL LF EMQ+ G+   +P++ TM  V+
Sbjct: 116 DMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVL 175

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNV 416
           +AC  LG L+  +  H YIDK     D+ +  A+IDMYAKCGS+E A  VF  +   ++V
Sbjct: 176 AACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDV 235

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           ++W++MI+  A+HG A   +  F+KM ++ + PN VTF+ V  AC H GLV EG++    
Sbjct: 236 MAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRR 295

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           MT +Y+I P  +HYGCMVDL+GRA  ++EA  +V++MP  P+V++WG+L++  R+HG+IE
Sbjct: 296 MTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIE 355

Query: 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMN 596
             E A K+L++L+P + GA VLLSN+YAK  RW+DV  +R  M+  GI K   CS IE+ 
Sbjct: 356 TCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVG 415

Query: 597 NEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSE 656
             ++EF   D SH +T QI+  L E++  LK  GYV +    L+DL++E K   +  HSE
Sbjct: 416 GVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSE 475

Query: 657 KLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVC 716
           KLAL YG + +   + IRIVKNLR+C DCH  IK++SKV+ REI++RD  RFHH+  G+C
Sbjct: 476 KLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLC 535

Query: 717 SCKDYW 722
           SC+DYW
Sbjct: 536 SCRDYW 541



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 201/414 (48%), Gaps = 45/414 (10%)

Query: 59  LPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHR----PKHA-LKVFLKMLNEGL 113
           LPT   SS +  L  FS  P   S + N  IRA   +      P H+ + +F++M   G+
Sbjct: 3   LPTRLISSTHPTLH-FSH-PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGV 60

Query: 114 TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
             D  +FP +L++ A    L  G  VH    + G   DPFVQT L+ MY + G +  AR 
Sbjct: 61  QPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARN 120

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM---SNVEPDEMVLSKILSACSR 230
           +F  M  R+++ WS MI+GY + G + E L LF EM+M   ++V P+E  +S +L+AC R
Sbjct: 121 LFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGR 180

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL-KNLVVSTA 289
            G L +G+  H +I    + +D  L + LI MYA CG ++ A  +F  +   K+++  +A
Sbjct: 181 LGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSA 240

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
           M+SG +  G  E+   +F +M+ +                               G++P+
Sbjct: 241 MISGLAMHGLAEECVGLFSKMINQ-------------------------------GVRPN 269

Query: 350 KVTMLSVISACAHLGVLDQAQ-RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
            VT L+V  AC H G++ + +  +    +  +    ++    ++D+Y + G ++ A  V 
Sbjct: 270 AVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVV 329

Query: 409 ERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYA 460
           + M    +V+ W ++++   +HGD     +   K+ + E  +      +  +YA
Sbjct: 330 KSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYA 383



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 142/346 (41%), Gaps = 63/346 (18%)

Query: 5   SQPTKPLTLPTSTAI--------SSCSSLTHMKQTHAQ--ILKLSHSHHSQNSLLLKLLL 54
           +QPT P   P S  +            +   + Q+ A   +L L  S H+Q   +L+  L
Sbjct: 39  AQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQ---ILRFGL 95

Query: 55  TSFSLPTTTPSSLY-------YALSIFSQIPA----PPSRVSNKFIRAISWSHRPKHALK 103
                  T+  S+Y        A ++F+ +P       S + N ++R   +    K AL 
Sbjct: 96  AIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQY----KEALA 151

Query: 104 VFLKMLNEGLTIDR---FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           +F +M   G+   R   F+   +L A  R   L  G   H    K G   D  + T L+ 
Sbjct: 152 LFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALID 211

Query: 161 MYGACGKILDARLMFDKMS-YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
           MY  CG +  A  +F  +   +D++ WS MI G   +GL +E + LF +M    V P+ +
Sbjct: 212 MYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAV 271

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
               +  AC   G +S G+     + ++          ++I    + GC           
Sbjct: 272 TFLAVFCACVHGGLVSEGKDYLRRMTED---------YSIIPTIQHYGC----------- 311

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQM-VEKDLICWSAMISG 324
                     MV  Y RAG++++A  +   M +E D++ W A++SG
Sbjct: 312 ----------MVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSG 347


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/566 (38%), Positives = 336/566 (59%), Gaps = 10/566 (1%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+G +    K+ DAR +FDKM  RD + W+ MI GY Q G   +   LF+E    +V   
Sbjct: 210 LMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV--- 266

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNN-VALDAHLQSTLITMYANCGCMDMAKGLF 276
               + ++S   + G L   +   + + + N V+ +A     +I  Y     MD+A+ LF
Sbjct: 267 -FTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNA-----MIAGYVQTKKMDIARELF 320

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           + +  +N+     M++GY + G +  AR  FD M ++D + W+A+I+GYA++ H +EAL 
Sbjct: 321 ESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALN 380

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           +F E++  G   ++ T    +S CA +  L+  ++IH    K  +G    V NA++ MY 
Sbjct: 381 MFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYF 440

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KCGS++ A + FE +  ++V+SW +M+  +A HG  R AL  F  MK   + P+ +T +G
Sbjct: 441 KCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVG 500

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           VL ACSH GL+D G E F SMT +Y + P  +HY CM+DL GRA  L EA +L+  MPF 
Sbjct: 501 VLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQ 560

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
           P    WG+L+ A R+HG  EL E AA+ + +++P + G  VLLSN+YA   RW D  ++R
Sbjct: 561 PGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMR 620

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
             M++ G+ K    S +E+ N+++ F   D SH + ++IY  L E+  +++  GYV    
Sbjct: 621 SKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTK 680

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
             L D+E+EEK  ++ +HSEKLA+ +G+++      IR++KNLRVCEDCH+ IK +SK+ 
Sbjct: 681 LVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIV 740

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
            R I++RD  RFHH+ +G CSC DYW
Sbjct: 741 GRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 154/310 (49%), Gaps = 20/310 (6%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           AR +FD+M  RD+  W+VM+ GY +N    +   LF+ M     E D +  + +LS  ++
Sbjct: 99  ARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMP----EKDVVSWNSLLSGYAQ 154

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
            G   Y +   E + DN    ++   + L+  Y + G ++ A  LF+     +L+    +
Sbjct: 155 NG---YVDEARE-VFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCL 210

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           + G+ R  ++ DAR +FD+M  +D I W+ MISGYA+     +A +LF+E        D 
Sbjct: 211 MGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPT----RDV 266

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
            T  +++S     G+LD+A+    + D+     ++   NA+I  Y +   ++ ARE+FE 
Sbjct: 267 FTWTAMVSGYVQNGMLDEAK---TFFDEMPEKNEVSY-NAMIAGYVQTKKMDIARELFES 322

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M  RN+ SW +MI  +   GD   A  FF+ M         V++  ++   + +G  +E 
Sbjct: 323 MPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDC----VSWAAIIAGYAQSGHYEEA 378

Query: 471 REIFASMTNE 480
             +F  +  +
Sbjct: 379 LNMFVEIKQD 388



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 167/353 (47%), Gaps = 43/353 (12%)

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           D  S+  ++   A+  GL +  ++           D F  T +V  Y   G + +A+  F
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPT----RDVFTWTAMVSGYVQNGMLDEAKTFF 289

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV--------------------- 214
           D+M  ++ V ++ MI GY Q    D    LFE M   N+                     
Sbjct: 290 DEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARK 349

Query: 215 ------EPDEMVLSKILSACSRAGNLSYGEAVHEF--IIDNNVALDAHLQSTLITMYANC 266
                 + D +  + I++  +++G+  Y EA++ F  I  +  +L+       ++  A+ 
Sbjct: 350 FFDMMPQRDCVSWAAIIAGYAQSGH--YEEALNMFVEIKQDGESLNRATFGCALSTCADI 407

Query: 267 GCMDMAKGLFDKVLL----KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
             +++ K +  + +         V  A+++ Y + G +++A   F+ + EKD++ W+ M+
Sbjct: 408 AALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTML 467

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
           +GYA +   ++AL +F  M+  G+KPD++TM+ V+SAC+H G+LD+       + K+ +G
Sbjct: 468 AGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKD-YG 526

Query: 383 --GDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDA 432
                +    +ID+  + G LE A+++   M  +    SW +++ A  IHG+ 
Sbjct: 527 VIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNT 579



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 172/373 (46%), Gaps = 63/373 (16%)

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           DI+ W+  I  + +NG  D  L++F  M                    R  ++SY     
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTM-------------------PRRSSVSY----- 83

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
                          + +I+ Y      ++A+ LFD++  ++L     M++GY R  ++ 
Sbjct: 84  ---------------NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLG 128

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
           DAR +FD M EKD++ W++++SGYA+N +  EA ++F+ M     + + ++   +++A  
Sbjct: 129 DARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISWNGLLAAYV 184

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
           H G +++A    L+  K+ +  DL   N ++  + +   L  AR +F++M  R+ ISW +
Sbjct: 185 HNGRIEEA--CLLFESKSDW--DLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNT 240

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI+ +A  G    A   F    DES   +  T+  ++      G++DE +  F  M    
Sbjct: 241 MISGYAQGGGLSQARRLF----DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM---- 292

Query: 482 NIPPKYE-HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
             P K E  Y  M+  + +   +  A EL E+MP   N+  W +++      G+I     
Sbjct: 293 --PEKNEVSYNAMIAGYVQTKKMDIARELFESMP-CRNISSWNTMITGYGQIGDIA---- 345

Query: 541 AAKQLLQLDPDHD 553
            A++   + P  D
Sbjct: 346 QARKFFDMMPQRD 358



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 154/325 (47%), Gaps = 22/325 (6%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A   F  +P          I   + S   + AL +F+++  +G +++R +F   L   A 
Sbjct: 347 ARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCAD 406

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G Q+HG   K+G+G+  FV   L+ MY  CG I +A   F+ +  +D+V W+ M
Sbjct: 407 IAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTM 466

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDNN 248
           + GY ++G   + L +FE MK + V+PDE+ +  +LSACS  G L  G E  +    D  
Sbjct: 467 LAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYG 526

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA-GQVE----DA 303
           V   +   + +I +    G ++ A+ L   +  +    S   + G SR  G  E     A
Sbjct: 527 VIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAA 586

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP----------DKVTM 353
            ++F +M  ++   +  + + YA +    +A K+ ++M+  G++           +K+  
Sbjct: 587 EMVF-KMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHT 645

Query: 354 LSVISACAHLGVLDQAQRIHLYIDK 378
            SV   C+H     + +RI+ Y+++
Sbjct: 646 FSV-GDCSH----PEKERIYAYLEE 665


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/628 (37%), Positives = 353/628 (56%), Gaps = 45/628 (7%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + A+++FL  L +G   DR++   ++ A      +  G+Q+H L  ++G  SD  V  GL
Sbjct: 236 EEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGL 295

Query: 159 VGMYGAC--GKILD-ARLMFDKMSYRDIVPWSVMIDGYFQNGLFD-EVLNLFEEMKMSNV 214
           V MY     G+ +D A  +F++M   D++ W+ +I GY Q+G+ + +V+ LF EM   ++
Sbjct: 296 VDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESI 355

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
           +P+ +  S IL +C+   +   G  VH  +I +N A  AH                    
Sbjct: 356 KPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQA-SAH-------------------- 394

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
                      V  A+VS Y+ +G +E+AR +F+Q+ E+      +MI    E       
Sbjct: 395 ----------TVGNALVSMYAESGCMEEARRVFNQLYER------SMIPCITEGRD---- 434

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
             L + +    +     T  S+ISA A +G+L + Q++H    K  FG D  V+N+++ M
Sbjct: 435 FPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSM 494

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y++CG LE A   F  ++ RNVISWTSMI+  A HG A  AL  F+ M    + PN VT+
Sbjct: 495 YSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTY 554

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           I VL ACSH GLV EG+E F SM  ++ + P+ EHY CMVDL  R+ +++EALE +  MP
Sbjct: 555 IAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMP 614

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
              + ++W +L+ ACR H  IE+ E  AK +++L+P      VLLSN+YA    W +V  
Sbjct: 615 LKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVAR 674

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           +R +M++  + KE   S +E+ N  +EF   D SH +   IY KL+ ++ ++K  GYVPD
Sbjct: 675 IRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPD 734

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
               L D+ DE K + +L HSEK+A+ +GLI++     IRI KNLRVC DCH+ IK +SK
Sbjct: 735 TSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSK 794

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              REI++RD  RFH  KDG CSC +YW
Sbjct: 795 ATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 170/361 (47%), Gaps = 35/361 (9%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKM-SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
           D  V   L+ +Y  CG +  AR +FD M   RDIV W+ M     +NG     L L  EM
Sbjct: 83  DAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEM 142

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
             S + P+   L     AC            HE        +   +              
Sbjct: 143 LESGLLPNAYTLCAAAHAC----------FPHELYCLVGGVVLGLVHKM----------- 181

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
               GL+      ++ V +A++   +R G +  AR +FD ++EK ++ W+ +IS Y +  
Sbjct: 182 ----GLWGT----DVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGE 233

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389
             +EA++LF +    G +PD+ TM S+ISAC  LG +    ++H    +     D  V+ 
Sbjct: 234 CAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSC 293

Query: 390 AIIDMYAKCG---SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI-FFNKMKDE 445
            ++DMYAK     +++ A +VFERM + +VISWT++I+ +   G   N ++  F +M +E
Sbjct: 294 GLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNE 353

Query: 446 SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505
           SI PN +T+  +L +C+     D GR++ A +    N    +     +V ++  +  + E
Sbjct: 354 SIKPNHITYSSILKSCASISDHDSGRQVHAHVIKS-NQASAHTVGNALVSMYAESGCMEE 412

Query: 506 A 506
           A
Sbjct: 413 A 413



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 111/484 (22%), Positives = 211/484 (43%), Gaps = 66/484 (13%)

Query: 9   KPLTLPTSTAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +P     S+ IS+C+ L  ++   Q H+  L++  +    +   +   L      +    
Sbjct: 251 EPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLA----SDACVSCGLVDMYAKSNIGQ 306

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSH-RPKHALKVFLKMLNEGLTIDRFSFPPIL 124
           ++ YA  +F ++P          I     S  +    + +F +MLNE +  +  ++  IL
Sbjct: 307 AMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSIL 366

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           K+ A       G QVH    K    S   V   LV MY   G + +AR +F+++  R ++
Sbjct: 367 KSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMI 426

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
           P   + +G            L   +   +V       + ++SA +  G L+ G+ +H   
Sbjct: 427 P--CITEG--------RDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMS 476

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           +      D  + ++L++MY+ CG ++ A   F+++  +N++  T+M+SG ++        
Sbjct: 477 LKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAK-------- 528

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                              GYAE      AL LF++M + G+KP+ VT ++V+SAC+H+G
Sbjct: 529 ------------------HGYAE-----RALSLFHDMILTGVKPNDVTYIAVLSACSHVG 565

Query: 365 VLDQA-------QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNV 416
           ++ +        QR H  I +      +     ++D+ A+ G ++ A E    M  + + 
Sbjct: 566 LVREGKEYFRSMQRDHGLIPR------MEHYACMVDLLARSGIVKEALEFINEMPLKADA 619

Query: 417 ISWTSMINAFAIHGDAR-NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           + W +++ A   H +     +   N ++ E  DP     +  LYA   AGL DE   I +
Sbjct: 620 LVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYA--DAGLWDEVARIRS 677

Query: 476 SMTN 479
           +M +
Sbjct: 678 AMRD 681



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 144/306 (47%), Gaps = 40/306 (13%)

Query: 230 RAGNLSYGEAVHEFIIDNNVA-LDAHLQSTLITMYANCGCMDMAKGLFDKVL-LKNLVVS 287
           RAG+L  G A+H  ++  ++   DA + ++L+T+Y+ CG +  A+ +FD +  L+++V  
Sbjct: 60  RAGDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSW 119

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           TAM S  +R G    + L+  +M+E                                G+ 
Sbjct: 120 TAMASCLARNGAERGSLLLIGEMLES-------------------------------GLL 148

Query: 348 PDKVTMLSVISAC--AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
           P+  T+ +   AC    L  L     + L      +G D+ V +A+IDM A+ G L SAR
Sbjct: 149 PNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNGDLASAR 208

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
           +VF+ +  + V+ WT +I+ +     A  A+  F    ++  +P+  T   ++ AC+  G
Sbjct: 209 KVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELG 268

Query: 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL---LREALELVETMPFAPNVVIW 522
            V  G ++  S+     +         +VD++ ++N+   +  A ++ E MP   +V+ W
Sbjct: 269 SVRLGLQLH-SLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMP-KNDVISW 326

Query: 523 GSLMAA 528
            +L++ 
Sbjct: 327 TALISG 332


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/622 (37%), Positives = 359/622 (57%), Gaps = 37/622 (5%)

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM 161
           +K    M    L+ D  ++  ++K       + +   VH      G+    F+   L+ M
Sbjct: 1   MKAMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINM 60

Query: 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221
           Y   G + +AR +FD+M  R++V W+ MI  Y  + L  + L+    M    V P+    
Sbjct: 61  YVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTY 120

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           S +L AC    NL     +H  I+   V L++                            
Sbjct: 121 SSVLRACDGLLNL---RQLHGSIL--KVGLES---------------------------- 147

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
            ++ V +A++  YS+ G+  DA  +F++M+  DL+ W+++I G+A+N+   E L L+  M
Sbjct: 148 -DVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRM 206

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
           +      D+ T+ SV+ AC  L +L+  +++H+++ K  +  DL +NNA++DMY KCGSL
Sbjct: 207 KRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSL 264

Query: 402 ESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           E A  +F RM   ++VISW++MI   A +G + +AL  F  MK +   PN +T +GVL+A
Sbjct: 265 EDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFA 324

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSHAGLV++G   F SM   + I P  EHYGC++DL GRA  L EA++L+  M   P+ V
Sbjct: 325 CSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAV 384

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
            W  L+ ACRVH  ++LA +AAK++L+LDP   G  +LLSNIYA  ++W+DV E+R+ M+
Sbjct: 385 TWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMR 444

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
            RG+ K+  CS IE++ +V+ F+  D SH + ++I  +L+++I  L   GYVPD +  L 
Sbjct: 445 TRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQ 504

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           DLE E+  + + +HSEKLA+ +GL+S      I I KNLR+C DCH F KLVS++  R I
Sbjct: 505 DLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCHIFAKLVSQLENRVI 564

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           VIRD  R+HH++ GVCSC DYW
Sbjct: 565 VIRDPIRYHHFRGGVCSCGDYW 586



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 193/405 (47%), Gaps = 54/405 (13%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++F ++P          I A S S+    AL   + ML EG+  + +++  +L+A   
Sbjct: 70  ARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRA--- 126

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            +GLL   Q+HG   K+G  SD FV++ L+  Y   G+  DA  +F++M   D+V W+ +
Sbjct: 127 CDGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSI 186

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G+ QN   DE L+L++ MK ++   D+  L+ +L AC+    L  G  VH  ++  + 
Sbjct: 187 IGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQ 246

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS-TAMVSGYSRAGQVEDARLIFD 308
             D  L + L+ MY  CG ++ A  LF +++ +  V+S + M++G               
Sbjct: 247 --DLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAG--------------- 289

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD- 367
                            A+N    +ALKLF  M+  G KP+ +T+L V+ AC+H G+++ 
Sbjct: 290 ----------------LAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVND 333

Query: 368 -----QAQRIHLYID--KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR-NVISW 419
                Q+ + H  ID  +  +G        IID+  + G L+ A ++   M    + ++W
Sbjct: 334 GWYYFQSMKEHFGIDPGREHYG-------CIIDLLGRAGKLDEAVKLIHEMNHEPDAVTW 386

Query: 420 TSMINAFAIHGDARNALIFFNK-MKDESIDPNGVTFIGVLYACSH 463
             ++ A  +H +   A+    + +K +  D      +  +YA S 
Sbjct: 387 RILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQ 431



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 10/235 (4%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTT 63
           L +  +P     S+ + +C  L +++Q H  ILK+       +  +   L+ ++S     
Sbjct: 109 LREGVRPNMYTYSSVLRACDGLLNLRQLHGSILKVG---LESDVFVRSALIDTYS----K 161

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
               + AL++F+++      V N  I   + +      L ++ +M       D+ +   +
Sbjct: 162 LGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSV 221

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK-MSYRD 182
           L+A      L  G QVH     L +  D  +   L+ MY  CG + DA L+F + M+ +D
Sbjct: 222 LRACTGLALLELGRQVH--VHVLKYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKD 279

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           ++ WS MI G  QNG   + L LFE MK    +P+ + +  +L ACS AG ++ G
Sbjct: 280 VISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDG 334


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/732 (34%), Positives = 374/732 (51%), Gaps = 69/732 (9%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P    +L  S   + CS L   +  HAQI+K                    +L    PS 
Sbjct: 6   PNSLASLVESAVSTQCSRLG--RAAHAQIIK--------------------TLDNPLPSF 43

Query: 67  LY-YALSIFSQIPAP----------PSRVSNKFIRAISWS---HRPKHALKVFLKMLNEG 112
           +Y + ++++S++  P          P+R    +   I+ S    R   AL  F  M  + 
Sbjct: 44  IYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDS 103

Query: 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR 172
           +  + F+FP   KA       L G QVH L  K G  SD FV      MY   G   +AR
Sbjct: 104 IQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEAR 163

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
            MFD+M  R+I  W+  +      G +D+ L  F E +    EP+ +     L+AC+ A 
Sbjct: 164 KMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGAS 223

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
            L  G  +H F++ +    D  + + LI  Y  C                          
Sbjct: 224 YLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCH------------------------- 258

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
                 QV  + +IF  + + + + W +MI  Y +N+  ++A  +F   +  G++P    
Sbjct: 259 ------QVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFM 312

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           + SV+SACA L VL+  + +H    K    G++ V +A++DMY KCGS+E A   F+ M 
Sbjct: 313 VSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMP 372

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDES--IDPNGVTFIGVLYACSHAGLVDEG 470
            RN+++W +MI  +A  G A  A+  F++M   S  + PN VTF+ VL ACS AG V+ G
Sbjct: 373 ERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVG 432

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
            EIF SM   Y I P  EHY C+VDL GRA ++ +A + ++ MP  P V +WG+L+ A +
Sbjct: 433 MEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASK 492

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
           + G+ EL + AA  L +LDP   G  VLLSN++A   RW++   +RK MK+ GI K   C
Sbjct: 493 MFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGC 552

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
           S I   N V+ F   D SH++  +I   L ++  E++ AGY+PD   AL DLE+EEK   
Sbjct: 553 SWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAME 612

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           + +HSEK+AL +GLIS      IRI KNLR+C DCH+ IK +S +  REI++RD   FH 
Sbjct: 613 VWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHR 672

Query: 711 YKDGVCSCKDYW 722
           ++D  CSC+DYW
Sbjct: 673 FRDNQCSCRDYW 684


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/625 (35%), Positives = 355/625 (56%), Gaps = 53/625 (8%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           +  L ++ +M+  G+ +D  +   +L   A +  L  G  VH L  K  F         L
Sbjct: 233 ERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTL 292

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + MY  CG +  A  +F+KM  R++V W+ MI GY ++G  D  + L ++M+   V+ D 
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDV 352

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           + ++ IL AC+R+G+L  G+ VH++I  NN+A                            
Sbjct: 353 VAITSILHACARSGSLDNGKDVHDYIKANNMA---------------------------- 384

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
               NL V  A++  Y++ G +E A  +F  MV KD+I W+ M+                
Sbjct: 385 ---SNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE-------------- 427

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
                  +KPD  TM  ++ ACA L  L++ + IH YI +N +  D  V NA++D+Y KC
Sbjct: 428 -------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G L  AR +F+ +  ++++SWT MI  + +HG    A+  FN+M+D  I+P+ V+FI +L
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
           YACSH+GL+++G   F  M N++NI PK EHY CMVDL  R   L +A + +ET+P AP+
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPD 600

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
             IWG+L+  CR++ +IELAE  A+++ +L+P++ G  VLL+NIYA+ ++ ++V  +R+ 
Sbjct: 601 ATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREK 660

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADR-SHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
           + ++G+ K   CS IE+   V  F++ +  SH  + +I   L ++  ++K  GY P    
Sbjct: 661 IGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKY 720

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
           AL++ ++ +K   +  HSEKLA+ +GL++      IR+ KNLRVC DCH   K +SK   
Sbjct: 721 ALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETR 780

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           REIV+RD  RFHH+KDG CSC+ +W
Sbjct: 781 REIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 170/333 (51%), Gaps = 22/333 (6%)

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
           E +      +L  C+   +L+ G+ VH  I  N+V +D  L   L++ YA CG +   + 
Sbjct: 96  ELETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRR 155

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQV--------------------EDARLIFDQMVEKD 314
           +FD +  KN+ +   MVS Y++ G                      E A  +FD++ ++D
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRD 215

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           +I W++MISGY  N   +  L ++ +M   G+  D  T++SV+  CA+ G L   + +H 
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
              K++F   +  +N ++DMY+KCG L+ A  VFE+M  RNV+SWTSMI  +   G +  
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDG 335

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           A+I   +M+ E +  + V    +L+AC+ +G +D G+++   +    N+         ++
Sbjct: 336 AIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMASNLFVCNALM 394

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
           D++ +   +  A  +  TM    +++ W +++ 
Sbjct: 395 DMYAKCGSMEGANSVFSTM-VVKDIISWNTMVG 426


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/688 (35%), Positives = 377/688 (54%), Gaps = 76/688 (11%)

Query: 86  NKFIRAISWSHRPKHALKVFLKM---LNEGLTIDR---FSFPPILKAIARAEGLLEGMQV 139
           N  + A   S     AL +F KM   ++E  T +R    S   IL A    + + +  +V
Sbjct: 83  NSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEV 142

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
           HG   + G   D FV   L+  Y  CG + +A  +F+ M ++D+V W+ M+ GY Q+G F
Sbjct: 143 HGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNF 202

Query: 200 D-----------------------------------EVLNLFEEMKMSNVEPDEMVLSKI 224
                                               E LN+F +M  S   P+ + +  +
Sbjct: 203 KAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISV 262

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           LSAC+  G  S G  +H +           L++ L+T+  + G  D           ++L
Sbjct: 263 LSACASLGAFSQGMEIHAY----------SLKNCLLTLDNDFGGED-----------EDL 301

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQ--MVEKDLICWSAMISGYAENNHPQEALKLFNEM- 341
           +V  A++  YS+    + AR IFD   + E++++ W+ MI G+A+     +ALKLF EM 
Sbjct: 302 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 361

Query: 342 -QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI------DKNAFGGDLRVNNAIIDM 394
            +  G+ P+  T+  ++ ACAHL  +   ++IH Y+      D +A+     V N +I+M
Sbjct: 362 SEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAY----FVANCLINM 417

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y+KCG +++AR VF+ M +++ ISWTSM+  + +HG    AL  F+KM+     P+ +TF
Sbjct: 418 YSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITF 477

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           + VLYACSH G+VD+G   F SM+ +Y + P+ EHY   +DL  R   L +A + V+ MP
Sbjct: 478 LVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMP 537

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
             P  V+W +L++ACRVH  +ELAE A  +L++++ ++DG+  L+SNIYA   RW+DV  
Sbjct: 538 MEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVAR 597

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           +R  MK+ GI K   CS ++       F   DRSH  + QIY  L  +I  +K  GYVP+
Sbjct: 598 IRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPE 657

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
            + AL D+++EEK  +++ HSEKLAL YGL+++     IRI KNLRVC DCH+    +SK
Sbjct: 658 TNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISK 717

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +   EIV+RD +RFHH+K+G CSC  YW
Sbjct: 718 IVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  242 bits (618), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 148/455 (32%), Positives = 237/455 (52%), Gaps = 29/455 (6%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           ML  G  +D F+ P +LKA         G   HGL    GF S+ F+   LV MY  CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 168 ILDARLMFDKMSYR---DIVPWSVMIDGYFQNGLFDEVLNLFEEM------KMSNVEPDE 218
           + +A ++FD+++ R   D++ W+ ++  + ++      L+LF +M      K +N   D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           + +  IL AC     +   + VH   I N   LD  + + LI  YA CG M+ A  +F+ 
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEA 334
           +  K++V   AMV+GYS++G  + A  +F  M    +  D++ W+A+I+GY++     EA
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA-------FGG---D 384
           L +F +M   G  P+ VT++SV+SACA LG   Q   IH Y  KN        FGG   D
Sbjct: 241 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDED 300

Query: 385 LRVNNAIIDMYAKCGSLESAREVFER--MRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
           L V NA+IDMY+KC S ++AR +F+   +  RNV++WT MI   A +GD+ +AL  F +M
Sbjct: 301 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 360

Query: 443 KDE--SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI-PPKYEHYGCMVDLFGR 499
             E   + PN  T   +L AC+H   +  G++I A +   +      Y    C+++++ +
Sbjct: 361 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSK 420

Query: 500 ANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
              +  A  + ++M    + + W S+M    +HG 
Sbjct: 421 CGDVDTARHVFDSMS-QKSAISWTSMMTGYGMHGR 454


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/484 (43%), Positives = 313/484 (64%)

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
           +VH   + +  A D H+QS  ++MYA  G +  A+  F ++   ++V  TAMV   +  G
Sbjct: 223 SVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGG 282

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
           + + AR +FD M ++D + W+AMI+GY      +EAL+LF+EM+  G    +VT++S ++
Sbjct: 283 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 342

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           ACA LG L++ + +H           + +  A+IDMY+KCG++ +A EVF+ M  RNV +
Sbjct: 343 ACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYT 402

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           WTS ++  A++G  R+ L  F +M+   ++PNGVTF+ VL  CS AGLVDEGR  F SM 
Sbjct: 403 WTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMK 462

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
           + + I P  EHYGCMVDL+GRA  L +A+  +  MP  P+  +WG+L+ A R+H  +EL 
Sbjct: 463 SNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELG 522

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
           ++A  +L+ ++  +D A VLLSNIYA  + W+ V  +R  MK +G+ K   CS IE+  +
Sbjct: 523 KYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGK 582

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           V+EF    ++H +  +I   L E+   L+  GY+ +    L D+E+E+K + I  HSEKL
Sbjct: 583 VHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKL 642

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+ +GL++  +D  IRIVKNLRVCEDCH++ K++SKV+ REIV+RDR RFHH+KDG CSC
Sbjct: 643 AIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSC 702

Query: 719 KDYW 722
           KDYW
Sbjct: 703 KDYW 706



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 184/469 (39%), Gaps = 79/469 (16%)

Query: 3   TLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT 62
           ++S   +PL  P   A ++ SS  H+++ HA +L         +       L S S    
Sbjct: 85  SVSNQMRPLRDPAKLA-AAASSQRHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDD 143

Query: 63  TPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
               L YA  +  + PA      N  +RA++   RP  A   F  +    L  D +SF  
Sbjct: 144 DDGDLSYARLLLPRRPAT-LLAHNSLLRALARGRRPHLAFGAFRDLP---LVPDNYSFTF 199

Query: 123 ILKAIARAEGLLEGM--------QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD---- 170
           +++A                    VH    + G   DP VQ+G V MY A G +      
Sbjct: 200 LVRAATALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAA 259

Query: 171 ---------------------------ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
                                      AR +FD M  RD V W+ MI GY   G   E L
Sbjct: 260 FAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREAL 319

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            LF+EM+ +     E+ L   L+AC++ G L  G+ VH       + L   L + LI MY
Sbjct: 320 RLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMY 379

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
           + CG +  A  +FD +  +N+   T+ VS                               
Sbjct: 380 SKCGAVAAAMEVFDSMGERNVYTWTSAVS------------------------------- 408

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           G A N   ++ L LF  M+  G++P+ VT + V+  C+  G++D+ +     +  N  G 
Sbjct: 409 GLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSN-HGI 467

Query: 384 D--LRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           D  L     ++D+Y + G L+ A      M    +   W +++NA  IH
Sbjct: 468 DPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIH 516


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/484 (43%), Positives = 313/484 (64%)

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
           +VH   + +  A D H+QS  ++MYA  G +  A+  F ++   ++V  TAMV   +  G
Sbjct: 223 SVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGG 282

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
           + + AR +FD M ++D + W+AMI+GY      +EAL+LF+EM+  G    +VT++S ++
Sbjct: 283 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 342

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           ACA LG L++ + +H           + +  A+IDMY+KCG++ +A EVF+ M  RNV +
Sbjct: 343 ACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYT 402

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           WTS ++  A++G  R+ L  F +M+   ++PNGVTF+ VL  CS AGLVDEGR  F SM 
Sbjct: 403 WTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMK 462

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
           + + I P  EHYGCMVDL+GRA  L +A+  +  MP  P+  +WG+L+ A R+H  +EL 
Sbjct: 463 SNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELG 522

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
           ++A  +L+ ++  +D A VLLSNIYA  + W+ V  +R  MK +G+ K   CS IE+  +
Sbjct: 523 KYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGK 582

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           V+EF    ++H +  +I   L E+   L+  GY+ +    L D+E+E+K + I  HSEKL
Sbjct: 583 VHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKL 642

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+ +GL++  +D  IRIVKNLRVCEDCH++ K++SKV+ REIV+RDR RFHH+KDG CSC
Sbjct: 643 AIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSC 702

Query: 719 KDYW 722
           KDYW
Sbjct: 703 KDYW 706



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 184/469 (39%), Gaps = 79/469 (16%)

Query: 3   TLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT 62
           ++S   +PL  P   A ++ SS  H+++ HA +L         +       L S S    
Sbjct: 85  SVSNQMRPLRDPAKLA-AAASSQRHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDD 143

Query: 63  TPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
               L YA  +  + PA      N  +RA++   RP  A   F  +    L  D +SF  
Sbjct: 144 DDGDLSYARLLLPRRPAT-LLAHNSLLRALARGRRPHLAFGAFRDLP---LAPDNYSFTF 199

Query: 123 ILKAIARAEGLLEGM--------QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD---- 170
           +++A                    VH    + G   DP VQ+G V MY A G +      
Sbjct: 200 LVRAATALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAA 259

Query: 171 ---------------------------ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
                                      AR +FD M  RD V W+ MI GY   G   E L
Sbjct: 260 FAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREAL 319

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            LF+EM+ +     E+ L   L+AC++ G L  G+ VH       + L   L + LI MY
Sbjct: 320 RLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMY 379

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
           + CG +  A  +FD +  +N+   T+ VS                               
Sbjct: 380 SKCGAVAAAMEVFDSMGERNVYTWTSAVS------------------------------- 408

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           G A N   ++ L LF  M+  G++P+ VT + V+  C+  G++D+ +     +  N  G 
Sbjct: 409 GLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSN-HGI 467

Query: 384 D--LRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           D  L     ++D+Y + G L+ A      M    +   W +++NA  IH
Sbjct: 468 DPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIH 516


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/484 (43%), Positives = 313/484 (64%)

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
           +VH   + +  A D H+QS  ++MYA  G +  A+  F ++   ++V  TAMV   +  G
Sbjct: 216 SVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGG 275

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
           + + AR +FD M ++D + W+AMI+GY      +EAL+LF+EM+  G    +VT++S ++
Sbjct: 276 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 335

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           ACA LG L++ + +H           + +  A+IDMY+KCG++ +A EVF+ M  RNV +
Sbjct: 336 ACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYT 395

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           WTS ++  A++G  R+ L  F +M+   ++PNGVTF+ VL  CS AGLVDEGR  F SM 
Sbjct: 396 WTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMK 455

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
           + + I P  EHYGCMVDL+GRA  L +A+  +  MP  P+  +WG+L+ A R+H  +EL 
Sbjct: 456 SNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELG 515

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
           ++A  +L+ ++  +D A VLLSNIYA  + W+ V  +R  MK +G+ K   CS IE+  +
Sbjct: 516 KYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGK 575

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           V+EF    ++H +  +I   L E+   L+  GY+ +    L D+E+E+K + I  HSEKL
Sbjct: 576 VHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKL 635

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+ +GL++  +D  IRIVKNLRVCEDCH++ K++SKV+ REIV+RDR RFHH+KDG CSC
Sbjct: 636 AIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSC 695

Query: 719 KDYW 722
           KDYW
Sbjct: 696 KDYW 699



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 184/469 (39%), Gaps = 79/469 (16%)

Query: 3   TLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT 62
           ++S   +PL  P   A ++ SS  H+++ HA +L         +       L S S    
Sbjct: 78  SVSNQMRPLRDPAKLA-AAASSQRHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDD 136

Query: 63  TPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
               L YA  +  + PA      N  +RA++   RP  A   F  +    L  D +SF  
Sbjct: 137 DDGDLSYARLLLPRRPAT-LLAHNSLLRALARGRRPHLAFGAFRDLP---LAPDNYSFTF 192

Query: 123 ILKAIARAEGLLEGM--------QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD---- 170
           +++A                    VH    + G   DP VQ+G V MY A G +      
Sbjct: 193 LVRAATALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAA 252

Query: 171 ---------------------------ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
                                      AR +FD M  RD V W+ MI GY   G   E L
Sbjct: 253 FAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREAL 312

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            LF+EM+ +     E+ L   L+AC++ G L  G+ VH       + L   L + LI MY
Sbjct: 313 RLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMY 372

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
           + CG +  A  +FD +  +N+   T+ VS                               
Sbjct: 373 SKCGAVAAAMEVFDSMGERNVYTWTSAVS------------------------------- 401

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           G A N   ++ L LF  M+  G++P+ VT + V+  C+  G++D+ +     +  N  G 
Sbjct: 402 GLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSN-HGI 460

Query: 384 D--LRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           D  L     ++D+Y + G L+ A      M    +   W +++NA  IH
Sbjct: 461 DPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIH 509


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/623 (38%), Positives = 364/623 (58%), Gaps = 40/623 (6%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA----RLMFDKMSYRDIVPWSVMIDGY 193
           Q+HGL  K G  +D +  TG + ++ A   I DA    R +       D   ++ ++ GY
Sbjct: 23  QIHGLFIKYGVDTDSYF-TGKLILHCAI-SISDALPYARRLLLCFPEPDAFMFNTLVRGY 80

Query: 194 FQNGLFDEVLNLF-EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
            ++      + +F E M+   V PD    + ++ A     +L  G  +H   + + +   
Sbjct: 81  SESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESH 140

Query: 253 AHLQSTLITMYANCGCMDMAKG-------------------------------LFDKVLL 281
             + +TLI MY  CGC++ A+                                +FDK+L+
Sbjct: 141 LFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLV 200

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           +N      M++GY +AG++E A+ IF +M  +D + WS MI G A N    E+   F E+
Sbjct: 201 RNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFREL 260

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
           Q  GM P++V++  V+SAC+  G  +  + +H +++K  +   + VNNA+IDMY++CG++
Sbjct: 261 QRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNV 320

Query: 402 ESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
             AR VFE M+ +R ++SWTSMI   A+HG    A+  FN+M    + P+G++FI +L+A
Sbjct: 321 PMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHA 380

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSHAGL++EG + F+ M   Y+I P+ EHYGCMVDL+GR+  L++A + +  MP  P  +
Sbjct: 381 CSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAI 440

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           +W +L+ AC  HG IELAE   ++L +LDP++ G LVLLSN YA   +W+DV  +RKSM 
Sbjct: 441 VWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMI 500

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK-PAGYVPDIHSAL 639
            + I K  A S +E+   +Y+F   ++      + +EKL E+I  LK  AGY P++ SAL
Sbjct: 501 VQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASAL 560

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
            D+E+EEK + +  HSEKLAL + L    K + IRIVKNLR+C DCH  +KL SKVY  E
Sbjct: 561 YDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVE 620

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           I++RDR RFH +KDG CSC+DYW
Sbjct: 621 ILVRDRNRFHSFKDGSCSCRDYW 643



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 226/505 (44%), Gaps = 118/505 (23%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           ++SC +L  + Q H   +K  +   + +    KL+L       +   +L YA  +    P
Sbjct: 12  LNSCKNLRALTQIHGLFIK--YGVDTDSYFTGKLIL---HCAISISDALPYARRLLLCFP 66

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIARAEGLLEGM 137
            P + + N  +R  S S  P +++ VF++M+ +G    D FSF  ++KA+     L  G 
Sbjct: 67  EPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGF 126

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACG------KILD--------------------- 170
           Q+H    K G  S  FV T L+GMYG CG      K+ D                     
Sbjct: 127 QMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGN 186

Query: 171 ----ARLMFDKMSYRDIVPWSVMIDGYFQ------------------------------- 195
               AR +FDKM  R+   W+VM+ GY +                               
Sbjct: 187 DVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAH 246

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           NG F+E    F E++ + + P+E+ L+ +LSACS++G+  +G+ +H F+     +    +
Sbjct: 247 NGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSV 306

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVS-TAMVSGYSRAGQVEDARLIFDQMVEKD 314
            + LI MY+ CG + MA+ +F+ +  K  +VS T+M++G +  GQ E             
Sbjct: 307 NNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGE------------- 353

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ---- 370
                             EA++LFNEM   G+ PD ++ +S++ AC+H G++++ +    
Sbjct: 354 ------------------EAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFS 395

Query: 371 ---RI-HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINA 425
              R+ H+  +   +G        ++D+Y + G L+ A +   +M      I W +++ A
Sbjct: 396 EMKRVYHIEPEIEHYG-------CMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGA 448

Query: 426 FAIHGDARNALIFFNKMKDESIDPN 450
            + HG+   A     ++ +  +DPN
Sbjct: 449 CSSHGNIELAEQVKQRLNE--LDPN 471


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/593 (38%), Positives = 362/593 (61%), Gaps = 10/593 (1%)

Query: 53  LLTSFSLP-TTTPSSLYYALSIFSQIPAPPSRVS--NKFIRAISW-SHR---PKHALKVF 105
           L+ +F+L    +P  L +AL+I + +P+PP   S  N   RA+S   HR    +H L ++
Sbjct: 49  LVAAFALSDPASPRPLLHALAILASLPSPPDSASPYNAAFRALSLCPHRHLVDRHCLPLY 108

Query: 106 LKML-NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA 164
             +L +     D  +FP +LKA AR +    G  V G   KLGF +D FV    V  +  
Sbjct: 109 RALLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSV 168

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN--VEPDEMVLS 222
            G ++ AR +FD+   RD+V W+ +I GY ++GL  E L LF  +      V PDE+ + 
Sbjct: 169 SGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMI 228

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
             +S C++ G+L  G+ +HEF+    V     L + ++ MY  CG +++AK +F+++  K
Sbjct: 229 GAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNK 288

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
            +V  T M+ G++R G +EDAR++FD+M E+D+  W+A+++GY +N   +EA+ LF+EMQ
Sbjct: 289 TVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQ 348

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
              + P+++TM++++SAC+ LG L+    +H YID++     + +  +++DMYAKCG+++
Sbjct: 349 ESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIK 408

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            A  +F+ +  +N ++WT+MI   A HG A  A+ +F +M D  + P+ +TFIGVL AC 
Sbjct: 409 KAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACC 468

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
           HAGLV EGR+ F+ M  +Y++  K +HY CM+DL GRA  L EA +LV TMP  P+ V+W
Sbjct: 469 HAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVW 528

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582
           G+L  ACR+HG I L E AA +L++LDP   G  VLL+N+YA+    +   ++R  M+  
Sbjct: 529 GALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHL 588

Query: 583 GILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
           G+ K   CS IE+N  V+EF+  D+SH  T  IY+ L+ +  ++K    + DI
Sbjct: 589 GVEKVPGCSCIELNGVVHEFIVKDKSHLDTIAIYDCLHGITLQMKHTANLIDI 641


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/693 (34%), Positives = 381/693 (54%), Gaps = 82/693 (11%)

Query: 81  PSRVSNKF--------IRAISWSHRPKHALKVFLKMLNEG---LTIDRFS---------F 120
           PSR  N F        +R++S       +L+ F  + N+G      D F+         F
Sbjct: 6   PSRSFNAFLNPLYSFTVRSLSMKISSSASLQEFTSLCNDGRIKQAYDTFTSEIWSDPSLF 65

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
             +L++  +   L  G QVH L    G   D F+   L+  Y   G+   + ++F  M  
Sbjct: 66  SHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPR 125

Query: 181 RDIVPWSVMIDGYFQNG-------LFDEV------------------------LNLFEEM 209
           R+++ ++++I+GY Q G       LFDE+                        L+LF+EM
Sbjct: 126 RNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEM 185

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
                 PDE  L  +L  C+   +L  G+ VH  ++     L + + S+L  MY      
Sbjct: 186 YGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYI----- 240

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
                                     ++G + D   +   M  + ++ W+ +I+G A+N 
Sbjct: 241 --------------------------KSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNG 274

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389
            P+E L  +N M++ G +PDK+T +SV+SAC+ L  L Q Q+IH  + K      L V +
Sbjct: 275 CPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVS 334

Query: 390 AIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449
           ++I MY++ G LE + + F      +V+ W+SMI A+  HG    AL  F++M+D  ++ 
Sbjct: 335 SLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEA 394

Query: 450 NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
           N VTF+ +LYACSH+GL ++G E F  M  +Y + P+ EHY C+VDL GRA  L EA  +
Sbjct: 395 NEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGM 454

Query: 510 VETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW 569
           + +MP  P+ +IW +L+AAC++H E E+AE  ++++++LDP    + VLLSNI+A  + W
Sbjct: 455 IRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNW 514

Query: 570 QDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPA 629
            +V ++RK+M++R + KE   S +E+ N V++F   D+SH Q  +I   L E++SELK  
Sbjct: 515 LNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQH 574

Query: 630 GYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFI 689
           GYVP++ S L D+++EEK   +  HSEK A+ + L+++ ++  IR++KNLRVC+DCHN I
Sbjct: 575 GYVPELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCDDCHNAI 634

Query: 690 KLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           K +S++  REI++RD +RFHH+KDG CSC +YW
Sbjct: 635 KCISRIRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 168/369 (45%), Gaps = 35/369 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++        N  I  ++     K AL +F +M   G   D F+   +L+  A 
Sbjct: 147 AQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAG 206

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              LL G +VH    K GF     V + L  MY   G + D   +   M  R +V W+ +
Sbjct: 207 LRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTL 266

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G  QNG  +EVLN +  MKM+   PD++    +LSACS    L  G+ +H  +I    
Sbjct: 267 IAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGA 326

Query: 250 ALDAHLQSTLITMYANCGCM-DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           +    + S+LI+MY+  GC+ D  K   D+    ++V+ ++M++ Y   G+ E       
Sbjct: 327 SSVLAVVSSLISMYSRSGCLEDSIKAFVDRENF-DVVLWSSMIAAYGFHGRGE------- 378

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
                                   EAL+LF++M+   M+ ++VT LS++ AC+H G+ ++
Sbjct: 379 ------------------------EALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEK 414

Query: 369 A-QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAF 426
             +   L + K      +     ++D+  + G LE A  +   M  + + I W +++ A 
Sbjct: 415 GTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAAC 474

Query: 427 AIHGDARNA 435
            +H +A  A
Sbjct: 475 KLHKEAEMA 483


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/471 (45%), Positives = 301/471 (63%), Gaps = 31/471 (6%)

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           GE VH   I N       +Q+TL+ MYA CG                             
Sbjct: 14  GEKVHSIAIRNGFESLVFVQNTLVHMYAACG----------------------------- 44

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
               E A  +F+ M E++L+ W+++I+GYA N  P EAL LF EM + G++PD  TM+S+
Sbjct: 45  --HAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSL 102

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           +SACA LG L   +R H+Y+ K    G+L   NA++D+YAKCGS+  A +VF+ M  ++V
Sbjct: 103 LSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSV 162

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           +SWTS+I   A++G  + AL  F +++ + + P+ +TF+GVLYACSH G+VDEG + F  
Sbjct: 163 VSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKR 222

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           M  EY I PK EHYGCMVDL GRA L+++A E ++ MP  PN V+W +L+ AC +HG + 
Sbjct: 223 MKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLA 282

Query: 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMN 596
           L E A  QLLQL+P H G  VLLSN+YA ++RW DV ++R++M   G+ K    S +E+ 
Sbjct: 283 LGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELR 342

Query: 597 NEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSE 656
           N ++EF+  DRSH QT++IY KL E+   LK  GYVP I + L D+E+EEK   + +HSE
Sbjct: 343 NRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSE 402

Query: 657 KLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTR 707
           K+A+ + LI++     IR+VKNLRVC DCH  IKL+SKV+ REIV+RDR+R
Sbjct: 403 KIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSR 453



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 160/309 (51%), Gaps = 35/309 (11%)

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           +AIA+   + EG +VH +  + GF S  FVQ  LV MY ACG    A  +F+ M+ R++V
Sbjct: 3   RAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLV 62

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ +I+GY  NG  +E L LF EM +  VEPD   +  +LSAC+  G L+ G   H ++
Sbjct: 63  TWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYM 122

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           +   +  + H  + L+ +YA CG +  A  +FD                           
Sbjct: 123 VKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFD--------------------------- 155

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
               +M EK ++ W+++I G A N   +EAL+LF E++  G+ P ++T + V+ AC+H G
Sbjct: 156 ----EMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCG 211

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTS 421
           ++D+       + K  +G   ++ +   ++D+  + G ++ A E  + M  + N + W +
Sbjct: 212 MVDEGFDYFKRM-KEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRT 270

Query: 422 MINAFAIHG 430
           ++ A  IHG
Sbjct: 271 LLGACTIHG 279



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 2/175 (1%)

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           A A L  + + +++H    +N F   + V N ++ MYA CG  ESA ++FE M  RN+++
Sbjct: 4   AIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVT 63

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           W S+IN +A++G    AL  F +M    ++P+G T + +L AC+  G +  GR     M 
Sbjct: 64  WNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV 123

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            +  +         ++DL+ +   +R+A ++ + M    +VV W SL+    V+G
Sbjct: 124 -KVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLIVGLAVNG 176



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 72/152 (47%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I   + + RP  AL +F +M   G+  D F+   +L A A    L  G + H    K
Sbjct: 65  NSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVK 124

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
           +G   +      L+ +Y  CG I  A  +FD+M  + +V W+ +I G   NG   E L L
Sbjct: 125 VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALEL 184

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           F+E++   + P E+    +L ACS  G +  G
Sbjct: 185 FKELERKGLMPSEITFVGVLYACSHCGMVDEG 216


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/692 (33%), Positives = 386/692 (55%), Gaps = 38/692 (5%)

Query: 31  THAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIR 90
            H  +LK+ +     N+ +   L+ ++S+       +  A  +F +I +         I 
Sbjct: 68  VHGCVLKVGYG---SNTFIGTALIDAYSVS----GCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 91  AISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGS 150
           + + +     AL+ F +M   G   + F+F  +LKA    +    G  VH    K  +  
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D +V  GL+ +Y  CG   DA   F  M   D++PWS MI  + Q+G  ++ L +F +M+
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMR 240

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
            + V P++   S +L A +   +L   + +H        AL A L +             
Sbjct: 241 RAFVIPNQFTFSSVLQASADIESLDLSKTIHGH------ALKAGLST------------- 281

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
                       ++ VS A+++ Y++ G +E +  +F+ + +++ + W+ +I  Y +   
Sbjct: 282 ------------DVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGD 329

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
            + AL LF+ M    ++  +VT  S++ ACA L  L+   ++H    K  +G D+ V NA
Sbjct: 330 GERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNA 389

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           +IDMYAKCGS++ AR +F+ +  R+ +SW ++I  +++HG    A+  FN MK+    P+
Sbjct: 390 LIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPD 449

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
            +TF+GVL ACS+ G +DEG++ F SM  +Y I P  EHY CMV L GR+  L +A++ +
Sbjct: 450 ELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFI 509

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
           E +PF P+V+IW +L+ AC +H ++EL   +A+++L+L+P  + + VLLSNIYA+ +RW 
Sbjct: 510 EDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWG 569

Query: 571 DVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAG 630
           +V  +RK MK +G+ KE   S IE    V+ F  AD SH     I   L  +  + + AG
Sbjct: 570 NVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAG 629

Query: 631 YVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIK 690
           Y P +++ L+D+ED+EK  ++  HSE+LAL +GL+       IRI+KNLR+C DCH+ IK
Sbjct: 630 YSPQLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRICVDCHSVIK 689

Query: 691 LVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           L+SK+  R+I++RD  RFHH+++G CSC DYW
Sbjct: 690 LISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 165/371 (44%), Gaps = 43/371 (11%)

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
           ++FD+M  R+ V +  +I GY Q+  F E   LF  +     E +  V + +L       
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
               G  VH  ++      +  + + LI  Y+  GC+ MA+ +FD++  K++V  T M  
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGM-- 118

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
                                        I+ YAEN+   EAL+ F++M+V G KP+  T
Sbjct: 119 -----------------------------IASYAENDCFSEALEFFSQMRVAGFKPNNFT 149

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
              V+ AC  L   D  + +H  + K  +  DL V   ++++Y +CG  + A   F  M 
Sbjct: 150 FAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMP 209

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD---- 468
           + +VI W+ MI+ FA  G +  AL  F +M+   + PN  TF  VL A +    +D    
Sbjct: 210 KNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKT 269

Query: 469 -EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
             G  + A ++ +  +         ++  + +   + +++EL E +    N V W +++ 
Sbjct: 270 IHGHALKAGLSTDVFVS------NALMACYAKCGCIEQSMELFEALS-DRNDVSWNTIIV 322

Query: 528 ACRVHGEIELA 538
           +    G+ E A
Sbjct: 323 SYVQLGDGERA 333


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/674 (36%), Positives = 368/674 (54%), Gaps = 60/674 (8%)

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG----------------LTI 115
           S+F ++P      + +  R +    RP  +L  F ++  EG                L  
Sbjct: 3   SLFKRLPRKRVAATRRSSRRVHAQPRPHPSLTTFSRLCVEGPLPAALALLSELAAAGLRA 62

Query: 116 DRFSFPPILKAIARAEGLLEG------MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL 169
           D  S   ++K   R      G      ++ HG     G G   FV   L  MY   G + 
Sbjct: 63  DPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGG-LFVSNSLASMYAKFGLLD 121

Query: 170 DARLMFDKMSYRDIVPWSVMIDGYFQ-NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228
           DA  MFD M  R++V W+ ++      +G   E L     M+   V P+    S +L AC
Sbjct: 122 DALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGAC 181

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
           +  G L+   AVH   +   +  D  ++S+LI                            
Sbjct: 182 TTPGMLT---AVHASTVKAGLDSDVFVRSSLI---------------------------- 210

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
                Y + G ++  R +FD+MV +DL+ W+++I+G+A++     A++LF  M+  G   
Sbjct: 211 ---DAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSS 267

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
           ++ T+ SV+ AC  + +L+  +++H ++ K  +  DL ++NA++DMY KCGSLE A  +F
Sbjct: 268 NQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YDRDLILHNALLDMYCKCGSLEDADALF 325

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
            RM +R+VISW++M++  A +G +  AL  F+ MK + + PN VT +GVL+ACSHAGLV+
Sbjct: 326 HRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVE 385

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           +G   F SM   + I P+ EH+ CMVDL GRA  L EA+E +  M   P+ VIW +L+ A
Sbjct: 386 DGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGA 445

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           CR+H    LA +AA+++L+L+PD  GA VLLSN YA  ++W D  +  K+M++RG+ KE 
Sbjct: 446 CRMHKNASLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEP 505

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
             S IE+   V+ F+  D SH  +D I ++LN +I  +K  GYVP     L DL  E+K 
Sbjct: 506 GRSWIELEKRVHVFIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKE 565

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
           +++ +HSEK+A+ +G + +     IRI+KNLR+C DCH F KLVSK   R IVIRD  RF
Sbjct: 566 DLLKYHSEKMAIVFGTMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRF 625

Query: 709 HHYKDGVCSCKDYW 722
           HH++DG CSC DYW
Sbjct: 626 HHFQDGACSCGDYW 639


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/510 (43%), Positives = 307/510 (60%), Gaps = 34/510 (6%)

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           PD      +L AC+R   L  GE++H     N                          GL
Sbjct: 118 PDTHTYPPLLQACTRLLALREGESLHAEAAKN--------------------------GL 151

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM--VEKDLICWSAMISGYAENNHPQE 333
              V +KN     ++V  Y   G  E A  +FD++  +E++L+ W+++++G+A N  P E
Sbjct: 152 VALVFVKN-----SLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPNE 206

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
            L +F E     + PD  T++SV++ACA +G L   +R+H++  K    G+  V NA+ID
Sbjct: 207 VLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALID 266

Query: 394 MYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
           +YAKCG +E A +VFE M   R V+SWTS+I   A +G  ++AL  F  M+ E + P  +
Sbjct: 267 LYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDI 326

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
           T +GVLYACSH GLVD+G   F  M ++Y I P  EH GCMVDL GRA  + EA   + T
Sbjct: 327 TMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITT 386

Query: 513 MPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572
           MP  PN V+W +L+ AC +H ++EL E A  +L++LDP H G  VLLSN+YA   RW D 
Sbjct: 387 MPVEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADA 446

Query: 573 GELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYV 632
             LRK+M   G+ K    S +E+ N VYEF+  DRSH ++DQIY+ L E+   L+  GYV
Sbjct: 447 HVLRKTMATHGVRKNPGHSLVELRNSVYEFVMGDRSHPESDQIYQTLAEIAERLRCQGYV 506

Query: 633 PDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLV 692
           P   + L D+E+EEK   + +HSE+LA+ + L+ S   S IRIVKNLR+C DCH  IKL+
Sbjct: 507 PRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGSPIRIVKNLRMCGDCHLVIKLI 566

Query: 693 SKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           SKVY REI++RDR+RFHH+K G CSCKDYW
Sbjct: 567 SKVYDREIIVRDRSRFHHFKGGECSCKDYW 596



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 198/412 (48%), Gaps = 41/412 (9%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS-QIPAPPS 82
           S+   KQ HA+ L+ +    S + LL K LL   +     P  L YA+++ S  +P P  
Sbjct: 30  SVAAAKQIHARALRAAGVPLS-HPLLAKHLLFHLASLRAGPPPLLYAVTVLSCLLPDPDP 88

Query: 83  RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGL 142
              N  +R  + S  P+ AL +  + L      D  ++PP+L+A  R   L EG  +H  
Sbjct: 89  FSLNTVLRIAASSAHPRIALALHRRRLAPP---DTHTYPPLLQACTRLLALREGESLHAE 145

Query: 143 GTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY--RDIVPWSVMIDGYFQNGLFD 200
             K G  +  FV+  LV  YGACG    A  +FD++    R++V W+ +++G+  NG  +
Sbjct: 146 AAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPN 205

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
           EVL +F E   +++ PD   +  +L+AC+  G L+ G  VH F     +  ++H+ + LI
Sbjct: 206 EVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALI 265

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM-VEKDLICWS 319
            +YA CG                                VEDA  +F++M V + ++ W+
Sbjct: 266 DLYAKCG-------------------------------GVEDAWKVFEEMGVARTVVSWT 294

Query: 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDK 378
           ++I G A N   ++AL+LF  M+   + P  +TM+ V+ AC+H G++D   R  +   DK
Sbjct: 295 SLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDK 354

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
                 +     ++D+  + G +E A      M    N + W +++ A A+H
Sbjct: 355 YGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMH 406


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/471 (43%), Positives = 314/471 (66%)

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           D  L + ++  Y   G +  A+ +FD +  ++LV    M+ GY+  G V  AR IFD   
Sbjct: 115 DVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTR 174

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           ++D   WS+MIS YA+    +EAL+L+ EM+V G+ PD ++M+SV+SAC+ +G L     
Sbjct: 175 DRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAE 234

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           +H +++ N    D+++  A++DMYAKCG +E++ +VF  M  ++V++W+SMI   A HG 
Sbjct: 235 VHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGL 294

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
             +AL  F++M  + + PN +TFIGVL AC+H GLV++G++ F+SM++ + + P+ EHYG
Sbjct: 295 GHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYG 354

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           CMVDL GRA  + EA+EL+ +M F P+ +IW +L+ ACR+H  +E+AE A  +L  LDP 
Sbjct: 355 CMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPL 414

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
            DG  VLLSNIYA+   W+ V E+RK+++   I +    S IE  N V+EF++ DRSH +
Sbjct: 415 ADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPR 474

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS 671
            ++IY+ L E++  L+ AGY P     L D++++ K+  +  HSEKLA+ +GL+ +   S
Sbjct: 475 IEEIYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARS 534

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            +RI KNLR CEDCH+ IKL+S  Y R++++RDR RFHH+ +G CSCKDYW
Sbjct: 535 TLRITKNLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 154/332 (46%), Gaps = 66/332 (19%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG-------LFD--- 200
           D F+   ++  Y A G++ +AR +FD MS RD+V W+ MI GY   G       +FD   
Sbjct: 115 DVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTR 174

Query: 201 ---------------------EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
                                E L L+ EM+++ V PD + +  +LSACS  G L+ G  
Sbjct: 175 DRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAE 234

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           VH F+  N V +D  L + L+ MYA CG ++ +  +F  + +K+++  ++M+ G +  G 
Sbjct: 235 VHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGL 294

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
             D                               AL LF+EM   G++P+++T + V+ A
Sbjct: 295 GHD-------------------------------ALSLFSEMISQGLQPNEITFIGVLIA 323

Query: 360 CAHLGVLDQAQRIHLYI-DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVI 417
           C H+G+++  ++    + D +     +     ++D+  + G +E A E+   M  + + I
Sbjct: 324 CTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPI 383

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDP 449
            W +++ A  IH +   A     K+K   +DP
Sbjct: 384 IWRTLLGACRIHKNVEIAEEAMAKLK--VLDP 413



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 142/360 (39%), Gaps = 77/360 (21%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           K AL+++ +M   G+  D  S   +L A +    L  G +VH          D  + T L
Sbjct: 195 KEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTAL 254

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           V MY  CG I ++  +F  M  +D++ WS MI G   +GL  + L+LF EM    ++P+E
Sbjct: 255 VDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNE 314

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           +    +L AC+  G ++ G+     + D +          ++    + GC          
Sbjct: 315 ITFIGVLIACTHVGLVNDGKKYFSSMSDVH---------GVVPRMEHYGC---------- 355

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDA-RLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                      MV    RAG VE+A  LI     + D I W  ++           A ++
Sbjct: 356 -----------MVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLG----------ACRI 394

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
              +++               A A L VLD     H  +  N              +YA+
Sbjct: 395 HKNVEIAE------------EAMAKLKVLDPLADGHYVLLSN--------------IYAQ 428

Query: 398 CGSLESAREVFERMRRRNV--------ISWTSMINAFAIHGDARNALI-FFNKMKDESID 448
             S E   E+ + +RR N+        I W + ++ F + GD  +  I    KM +E +D
Sbjct: 429 ANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEF-VSGDRSHPRIEEIYKMLEEMMD 487


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/681 (35%), Positives = 381/681 (55%), Gaps = 25/681 (3%)

Query: 42  HHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHA 101
           ++S N+LL  L ++S         SL  A  +F ++P   S   N  I     SH     
Sbjct: 100 NYSYNTLLHALAVSS---------SLADARGLFDEMPVRDSVTYNVMIS----SHANHGL 146

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM 161
           + +     +     D  S+  +L A  R   + E   +    T+     D      L+  
Sbjct: 147 VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW----DVISWNALMSG 202

Query: 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221
           Y   GK+ +AR +FD+M  RD+V W++M+ GY + G   E   LF+   + +V       
Sbjct: 203 YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTW 258

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           + ++S  ++ G L     V + + + N    A   + ++  Y     MD AK LF+ +  
Sbjct: 259 TAVVSGYAQNGMLEEARRVFDAMPERN----AVSWNAMVAAYIQRRMMDEAKELFNMMPC 314

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           +N+     M++GY++AG +E+A+ +FD M +KD + W+AM++ Y++    +E L+LF EM
Sbjct: 315 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
             CG   ++     V+S CA +  L+   ++H  + +  +G    V NA++ MY KCG++
Sbjct: 375 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNM 434

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
           E AR  FE M  R+V+SW +MI  +A HG  + AL  F+ M+  S  P+ +T +GVL AC
Sbjct: 435 EDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494

Query: 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI 521
           SH+GLV++G   F SM +++ +  K EHY CM+DL GRA  L EA +L++ MPF P+  +
Sbjct: 495 SHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTM 554

Query: 522 WGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581
           WG+L+ A R+H   EL   AA+++ +L+P++ G  VLLSNIYA   +W+D  ++R  M+E
Sbjct: 555 WGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEE 614

Query: 582 RGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVD 641
           RG+ K    S IE+ N+V+ F   D  H + ++IY  L ++   +K AGYV      L D
Sbjct: 615 RGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHD 674

Query: 642 LEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIV 701
           +E+EEK  ++ +HSEKLA+ YG+++      IR++KNLRVC DCHN  K +S +  R I+
Sbjct: 675 VEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLIL 734

Query: 702 IRDRTRFHHYKDGVCSCKDYW 722
           +RD  RFHH++ G CSC DYW
Sbjct: 735 LRDSNRFHHFRGGSCSCGDYW 755



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 185/389 (47%), Gaps = 30/389 (7%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D +    L+        + DAR +FD+M  RD V ++VMI  +  +GL     + F+   
Sbjct: 99  DNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAP 158

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
               E D +  + +L+A  R G +         + ++    D    + L++ Y   G M 
Sbjct: 159 ----EKDAVSWNGMLAAYVRNGRVEEARG----LFNSRTEWDVISWNALMSGYVQWGKMS 210

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            A+ LFD++  +++V    MVSGY+R G + +AR +FD    +D+  W+A++SGYA+N  
Sbjct: 211 EARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGM 270

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
            +EA ++F+ M     + + V+  ++++A     ++D+A+ +   +       ++   N 
Sbjct: 271 LEEARRVFDAMP----ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR----NVASWNT 322

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           ++  YA+ G LE A+ VF+ M +++ +SW +M+ A++  G +   L  F +M       N
Sbjct: 323 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVN 382

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNE-YNIPPKYEHYGCMVD-----LFGRANLLR 504
              F  VL  C+    ++ G ++   +    Y +       GC V      ++ +   + 
Sbjct: 383 RSAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFVGNALLAMYFKCGNME 435

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHG 533
           +A    E M    +VV W +++A    HG
Sbjct: 436 DARNAFEEME-ERDVVSWNTMIAGYARHG 463



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 164/349 (46%), Gaps = 25/349 (7%)

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
            G++ DA  +F  M  R    ++ M+ GY  NG      +LF  +      PD    + +
Sbjct: 51  AGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP----RPDNYSYNTL 106

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L A + + +L+        + D     D+   + +I+ +AN G + +A+  FD    K+ 
Sbjct: 107 LHALAVSSSLADARG----LFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDA 162

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
           V    M++ Y R G+VE+AR +F+   E D+I W+A++SGY +     EA +LF+ M   
Sbjct: 163 VSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP-- 220

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
               D V+   ++S  A  G + +A+R+       A   D+    A++  YA+ G LE A
Sbjct: 221 --GRDVVSWNIMVSGYARRGDMVEARRLF----DAAPVRDVFTWTAVVSGYAQNGMLEEA 274

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
           R VF+ M  RN +SW +M+ A+        A   FN M   ++     ++  +L   + A
Sbjct: 275 RRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV----ASWNTMLTGYAQA 330

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
           G+++E + +F +M  +  +      +  M+  + +     E L+L   M
Sbjct: 331 GMLEEAKAVFDTMPQKDAVS-----WAAMLAAYSQGGCSEETLQLFIEM 374



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 156/336 (46%), Gaps = 22/336 (6%)

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           +EP+ +  +K ++A  RAG ++  E +   +   + +      + ++  Y+  G + +A 
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTST----YNAMLAGYSANGRLPLAA 89

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
            LF  +   +      ++   + +  + DAR +FD+M  +D + ++ MIS +A +     
Sbjct: 90  SLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSL 149

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
           A   F+       + D V+   +++A    G +++A+   L+  +  +  D+   NA++ 
Sbjct: 150 ARHYFD----LAPEKDAVSWNGMLAAYVRNGRVEEAR--GLFNSRTEW--DVISWNALMS 201

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
            Y + G +  ARE+F+RM  R+V+SW  M++ +A  GD   A   F+      +     T
Sbjct: 202 GYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FT 257

Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
           +  V+   +  G+++E R +F +M     +      +  MV  + +  ++ EA EL   M
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKELFNMM 312

Query: 514 PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           P   NV  W +++      G +E A+     + Q D
Sbjct: 313 P-CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKD 347


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/623 (38%), Positives = 364/623 (58%), Gaps = 40/623 (6%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA----RLMFDKMSYRDIVPWSVMIDGY 193
           Q+HGL  K G  +D +  TG + ++ A   I DA    R +       D   ++ ++ GY
Sbjct: 15  QIHGLFIKYGVDTDSYF-TGKLILHCAI-SISDALPYARRLLLCFPEPDAFMFNTLVRGY 72

Query: 194 FQNGLFDEVLNLF-EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
            ++      + +F E M+   V PD    + ++ A     +L  G  +H   + + +   
Sbjct: 73  SESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESH 132

Query: 253 AHLQSTLITMYANCGCMDMAKG-------------------------------LFDKVLL 281
             + +TLI MY  CGC++ A+                                +FDK+L+
Sbjct: 133 LFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLV 192

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           +N      M++GY +AG++E A+ IF +M  +D + WS MI G A N    E+   F E+
Sbjct: 193 RNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFREL 252

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
           Q  GM P++V++  V+SAC+  G  +  + +H +++K  +   + VNNA+IDMY++CG++
Sbjct: 253 QRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNV 312

Query: 402 ESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
             AR VFE M+ +R ++SWTSMI   A+HG    A+  FN+M    + P+G++FI +L+A
Sbjct: 313 PMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHA 372

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSHAGL++EG + F+ M   Y+I P+ EHYGCMVDL+GR+  L++A + +  MP  P  +
Sbjct: 373 CSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAI 432

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           +W +L+ AC  HG IELAE   ++L +LDP++ G LVLLSN YA   +W+DV  +RKSM 
Sbjct: 433 VWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMI 492

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK-PAGYVPDIHSAL 639
            + I K  A S +E+   +Y+F   ++      + +EKL E+I  LK  AGY P++ SAL
Sbjct: 493 VQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASAL 552

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
            D+E+EEK + +  HSEKLAL + L    K + IRIVKNLR+C DCH  +KL SKVY  E
Sbjct: 553 YDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVE 612

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           I++RDR RFH +KDG CSC+DYW
Sbjct: 613 ILVRDRNRFHSFKDGSCSCRDYW 635



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 226/505 (44%), Gaps = 118/505 (23%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           ++SC +L  + Q H   +K  +   + +    KL+L       +   +L YA  +    P
Sbjct: 4   LNSCKNLRALTQIHGLFIK--YGVDTDSYFTGKLIL---HCAISISDALPYARRLLLCFP 58

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIARAEGLLEGM 137
            P + + N  +R  S S  P +++ VF++M+ +G    D FSF  ++KA+     L  G 
Sbjct: 59  EPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGF 118

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACG------KILD--------------------- 170
           Q+H    K G  S  FV T L+GMYG CG      K+ D                     
Sbjct: 119 QMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGN 178

Query: 171 ----ARLMFDKMSYRDIVPWSVMIDGYFQ------------------------------- 195
               AR +FDKM  R+   W+VM+ GY +                               
Sbjct: 179 DVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAH 238

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           NG F+E    F E++ + + P+E+ L+ +LSACS++G+  +G+ +H F+     +    +
Sbjct: 239 NGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSV 298

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVS-TAMVSGYSRAGQVEDARLIFDQMVEKD 314
            + LI MY+ CG + MA+ +F+ +  K  +VS T+M++G +  GQ E             
Sbjct: 299 NNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGE------------- 345

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ---- 370
                             EA++LFNEM   G+ PD ++ +S++ AC+H G++++ +    
Sbjct: 346 ------------------EAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFS 387

Query: 371 ---RI-HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINA 425
              R+ H+  +   +G        ++D+Y + G L+ A +   +M      I W +++ A
Sbjct: 388 EMKRVYHIEPEIEHYG-------CMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGA 440

Query: 426 FAIHGDARNALIFFNKMKDESIDPN 450
            + HG+   A     ++ +  +DPN
Sbjct: 441 CSSHGNIELAEQVKQRLNE--LDPN 463


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/655 (35%), Positives = 371/655 (56%), Gaps = 12/655 (1%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           +AL +F  +P       N  + A+S S R + AL + + M ++G+ +D  ++   L A A
Sbjct: 222 HALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACA 281

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           R   L  G Q+H    +     DP+V + LV +Y   G   +A+ +F+ +  R+ V W+V
Sbjct: 282 RLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTV 341

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I G+ Q G F E + LF +M+   +  D+  L+ ++S C    +L  G  +H   + + 
Sbjct: 342 LISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSG 401

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
                 + ++LI+MYA C  +  A+ +F  +  K++V  T+M++ YS+ G V  AR  FD
Sbjct: 402 QIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFD 461

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLD 367
            M EK++I W+AM+  Y ++   ++ L+++  M     ++PD VT +++   CA LG   
Sbjct: 462 GMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANK 521

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
              +I     K     D  V NA+I MY+KCG +  AR+VF+ +  ++++SW +MI  ++
Sbjct: 522 LGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYS 581

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            HG  + A+  F+ +      P+ ++++ VL  CSH+GLV EG+  F  M   +NI P  
Sbjct: 582 QHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGL 641

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
           EH+ CMVDL GRA  L EA +L++ MP  P   +WG+L++AC++HG  ELAE AAK + +
Sbjct: 642 EHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFE 701

Query: 548 LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
           LD    G+ +L++ IYA   +  D  ++RK M+++GI K    S +E++N+V+ F   D 
Sbjct: 702 LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDV 761

Query: 608 SHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS 667
           SH Q   I +KL+E++ ++   GYV           D  + E+   HSEKLA+ +GL++ 
Sbjct: 762 SHPQVLAIRKKLDELMEKIARLGYVR---------TDSTRSEI--HHSEKLAVAFGLMTL 810

Query: 668 KKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
                I I+KNLR+C DCH  IKL+S V  RE VIRD  RFHH+  G CSC DYW
Sbjct: 811 PTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/466 (25%), Positives = 215/466 (46%), Gaps = 71/466 (15%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIA 128
           A+ +F ++PA      N  +     S +   +L+ FL M   G +  + F+    +K+  
Sbjct: 90  AVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCG 149

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI-LDARL-------------- 173
                   +Q+  +  K     D  V   LV M+  CG + L +RL              
Sbjct: 150 ALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNS 209

Query: 174 ----------------MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
                           +FD M  RD+V W++M+    Q+G   E L++  +M+   V  D
Sbjct: 210 MLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLD 269

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
               +  L+AC+R  +L +G+ +H  +I N   +D ++ S L+ +YA  GC   AKG+F+
Sbjct: 270 STTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFN 329

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
            +  +N V  T ++SG+ + G                  C++             E+++L
Sbjct: 330 SLHDRNNVAWTVLISGFLQYG------------------CFT-------------ESVEL 358

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           FN+M+   M  D+  + ++IS C     L   +++H    K+     + V+N++I MYAK
Sbjct: 359 FNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAK 418

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           C +L+SA  +F  M  ++++SWTSMI A++  G+   A  FF+ M ++++    +T+  +
Sbjct: 419 CDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV----ITWNAM 474

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF-GRANL 502
           L A    G  ++G  ++  M +E  + P +  Y   V LF G A+L
Sbjct: 475 LGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTY---VTLFKGCADL 517



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 186/379 (49%), Gaps = 3/379 (0%)

Query: 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-NVEPDEMV 220
           Y   G++ DA  +F +M  RD+  W+ ++ GYFQ+  +   L  F  M  S +  P+   
Sbjct: 81  YAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFT 140

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           L+  + +C   G  S    +   +   +   D+ + + L+ M+  CG +D+A  LF ++ 
Sbjct: 141 LACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIK 200

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
              +    +M++GY +   V+ A  +FD M E+D++ W+ M+S  +++   +EAL +  +
Sbjct: 201 EPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVD 260

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQ  G++ D  T  S ++ACA L  L   +++H  + +N    D  V +A++++YAK G 
Sbjct: 261 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGC 320

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
            + A+ VF  +  RN ++WT +I+ F  +G    ++  FN+M+ E +  +      ++  
Sbjct: 321 FKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISG 380

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           C     +  GR++ +       I         ++ ++ + + L+ A  +   M    ++V
Sbjct: 381 CCSRMDLCLGRQLHSLCLKSGQIQAVVVS-NSLISMYAKCDNLQSAEAIFRFMN-EKDIV 438

Query: 521 IWGSLMAACRVHGEIELAE 539
            W S++ A    G +  A 
Sbjct: 439 SWTSMITAYSQVGNVAKAR 457



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/496 (22%), Positives = 207/496 (41%), Gaps = 83/496 (16%)

Query: 17  TAISSCSSLTHMKQTHAQILK-LSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
           TA +  SSL   KQ HAQ+++ L H      S L++L   S             A  +F+
Sbjct: 278 TACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKE--------AKGVFN 329

Query: 76  QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
            +    +      I           ++++F +M  E +T+D+F+   ++        L  
Sbjct: 330 SLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCL 389

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGAC------------------------------ 165
           G Q+H L  K G      V   L+ MY  C                              
Sbjct: 390 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQ 449

Query: 166 -GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSK 223
            G +  AR  FD MS ++++ W+ M+  Y Q+G  ++ L +++ M     V PD +    
Sbjct: 450 VGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVT 509

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           +   C+  G    G+ +    +   + +D  + + +ITMY+ CG +  A+ +FD + +K+
Sbjct: 510 LFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKD 569

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           +V   AM++GYS+ G  + A  IFD ++++                              
Sbjct: 570 IVSWNAMITGYSQHGMGKQAIEIFDDILKR------------------------------ 599

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID----KNAFGGDLRVNNAIIDMYAKCG 399
            G KPD ++ ++V+S C+H G++ + +    Y D     +     L   + ++D+  + G
Sbjct: 600 -GAKPDYISYVAVLSGCSHSGLVQEGK---FYFDMMKRAHNISPGLEHFSCMVDLLGRAG 655

Query: 400 SLESAREVFERMRRRNVIS-WTSMINAFAIHGDARNA-LIFFNKMKDESIDPNGVTFIGV 457
            L  A+++ + M  +     W ++++A  IHG+   A L   +  + +S D      +  
Sbjct: 656 HLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAK 715

Query: 458 LYACSHAGLVDEGREI 473
           +YA   AG  D+  +I
Sbjct: 716 IYA--DAGKSDDSAQI 729



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 164/363 (45%), Gaps = 41/363 (11%)

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM-DMAKGLFDKVLLKN 283
           L +C   G L+   A+H  ++   +A    LQ+TL+  Y +CG + D  + L   +   N
Sbjct: 11  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPN 70

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           ++    M++GY++ G++ DA  +F +M  +D+  W+ ++SGY ++     +L+ F  M  
Sbjct: 71  VITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHR 130

Query: 344 CGMK-PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS-- 400
            G   P+  T+   + +C  LG    A ++   + K     D  V  A++DM+ +CG+  
Sbjct: 131 SGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVD 190

Query: 401 -----------------------------LESAREVFERMRRRNVISWTSMINAFAIHGD 431
                                        ++ A E+F+ M  R+V+SW  M++A +  G 
Sbjct: 191 LASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 250

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT-NEYNIPPKYEHY 490
            R AL     M+ + +  +  T+   L AC+    +  G+++ A +  N  +I P     
Sbjct: 251 VREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA-- 308

Query: 491 GCMVDLFGRANLLREALELVETM----PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
             +V+L+ ++   +EA  +  ++      A  V+I G L   C     +EL      +L+
Sbjct: 309 SALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTE-SVELFNQMRAELM 367

Query: 547 QLD 549
            LD
Sbjct: 368 TLD 370


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/720 (33%), Positives = 387/720 (53%), Gaps = 43/720 (5%)

Query: 8   TKPLTLPTSTAISSCSS---LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP 64
            +P     S  +++C+    L   ++ HA +++   + + ++      L+  +S      
Sbjct: 198 VRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVR---TGYDKDVFTANALVDMYS----KL 250

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
             ++ A  +F ++P       N FI         +HAL++ L+M + GL  + F+   IL
Sbjct: 251 GDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSIL 310

Query: 125 KAIARAEGLLEGM--QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           KA A A      +  Q+HG   K    SD ++   LV MY   G + DAR +F+ +  +D
Sbjct: 311 KACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKD 370

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           ++ W+ +I G    G   E L+LF  M+    + +   L+ +L + +    +S    VH 
Sbjct: 371 LLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHA 430

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
                    D+H+ + LI  Y  C C+  A                              
Sbjct: 431 LAEKIGFLSDSHVVNGLIDSYWKCNCLRYANK---------------------------- 462

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
              +F++    ++I +++MI+  ++ +H ++A+KLF EM   G++PD   + S+++ACA 
Sbjct: 463 ---VFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACAS 519

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           L   +Q +++H ++ K  F  D+   NA++  YAKCGS+E A   F  +  + V+SW++M
Sbjct: 520 LSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAM 579

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I   A HG  + AL  F +M DE I PN +T   VL AC+HAGLVDE +  F+SM   + 
Sbjct: 580 IGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFG 639

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           I    EHY CM+DL GRA  L +A+ELV +MPF  N  +WG+L+AA RVH + EL + AA
Sbjct: 640 IDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAA 699

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           ++L  L+P+  G  VLL+N YA    W +V ++RK MK+  + KE A S +E+ + V+ F
Sbjct: 700 EKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTF 759

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
           +  D+SH +   IY KL E+   +  AGYVP++   L D++  EK  ++  HSE+LA+ +
Sbjct: 760 IVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEKELLLSHHSERLAVAF 819

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            LIS+   + IR+ KNLR+C DCH   K +SK+ +REI+IRD  RFHH+ DG CSC DYW
Sbjct: 820 ALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFSDGACSCGDYW 879



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 149/543 (27%), Positives = 247/543 (45%), Gaps = 50/543 (9%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P  T  ++  SL      HA +LK    H  +N LL      SF      P S   A  +
Sbjct: 9   PLLTRYAATQSLFLGAHIHAHLLKSGLLHAFRNHLL------SFYSKCRLPGS---ARRV 59

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F + P P     +  + A S +  P+ AL  F  M   G+  + F+ P +LK    A GL
Sbjct: 60  FDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDA-GL 118

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY-RDIVPWSVMIDG 192
             G+QVH +    G   D FV   LV MYG  G + +AR +FD+ +  R+ V W+ M+  
Sbjct: 119 --GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSA 176

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           + +N    + + LF EM  S V P+E   S +++AC+ + +L  G  VH  ++      D
Sbjct: 177 FVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKD 236

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
               + L+ MY+  G + MA  +F KV                                +
Sbjct: 237 VFTANALVDMYSKLGDIHMAALVFGKV-------------------------------PK 265

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS--ACAHLGVLDQAQ 370
            D++ W+A ISG   + H Q AL+L  +M+  G+ P+  T+ S++   A A  G     +
Sbjct: 266 TDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGR 325

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
           +IH ++ K     D  +  A++DMYAK G L+ AR+VFE + R++++ W ++I+  +  G
Sbjct: 326 QIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGG 385

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
               +L  F +M+ E  D N  T   VL + +    + +  ++ A +  +          
Sbjct: 386 CHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHA-LAEKIGFLSDSHVV 444

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV--HGEIELAEFAAKQLLQL 548
             ++D + + N LR A ++ E    + N++ + S++ A     HGE  +  F       L
Sbjct: 445 NGLIDSYWKCNCLRYANKVFEEHS-SDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGL 503

Query: 549 DPD 551
           +PD
Sbjct: 504 EPD 506



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 124/488 (25%), Positives = 220/488 (45%), Gaps = 38/488 (7%)

Query: 70  ALSIFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           A  +F +     + VS N  + A   + R   A+++F +M+  G+  + F F  ++ A  
Sbjct: 154 ARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACT 213

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
            +  L  G +VH +  + G+  D F    LV MY   G I  A L+F K+   D+V W+ 
Sbjct: 214 GSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNA 273

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS--ACSRAGNLSYGEAVHEFIID 246
            I G   +G     L L  +MK S + P+   LS IL   A + AG  + G  +H F+I 
Sbjct: 274 FISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIK 333

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
                D ++   L+ MYA  G +D A+ +F+ +  K+L++  A++SG S  G        
Sbjct: 334 ACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGG-------- 385

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
                     C               E+L LF  M+  G   ++ T+ +V+ + A L  +
Sbjct: 386 ----------CHG-------------ESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAI 422

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
               ++H   +K  F  D  V N +ID Y KC  L  A +VFE     N+I++TSMI A 
Sbjct: 423 SDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITAL 482

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           +      +A+  F +M  + ++P+      +L AC+     ++G+++ A +     +   
Sbjct: 483 SQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDV 542

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
           +     +V  + +   + +A      +P    VV W +++     HG  + A    ++++
Sbjct: 543 FAG-NALVYTYAKCGSIEDADLAFSGLP-DKGVVSWSAMIGGLAQHGHGKRALDVFRRMV 600

Query: 547 --QLDPDH 552
             ++ P+H
Sbjct: 601 DERIAPNH 608



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 17/298 (5%)

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLV--VSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           S L+T YA    + +   +   +L   L+      ++S YS+      AR +FD+  +  
Sbjct: 8   SPLLTRYAATQSLFLGAHIHAHLLKSGLLHAFRNHLLSFYSKCRLPGSARRVFDETPDPC 67

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC---AHLGVLDQAQR 371
            + WS++++ Y+ N  P+EAL  F  M+  G++ ++   L ++  C   A LGV     +
Sbjct: 68  HVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFA-LPIVLKCAPDAGLGV-----Q 121

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF-ERMRRRNVISWTSMINAFAIHG 430
           +H         GD+ V NA++ MY   G ++ AR VF E  R RN +SW  M++AF  + 
Sbjct: 122 VHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKND 181

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
              +A+  F +M    + PN   F  V+ AC+ +  ++ GR++ A M             
Sbjct: 182 RCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHA-MVVRTGYDKDVFTA 240

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
             +VD++ +   +  A  +   +P   +VV W + ++ C +HG     + A + LLQ+
Sbjct: 241 NALVDMYSKLGDIHMAALVFGKVP-KTDVVSWNAFISGCVLHGH---DQHALELLLQM 294


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/660 (37%), Positives = 379/660 (57%), Gaps = 6/660 (0%)

Query: 67   LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
            +Y A  +F ++P          +   S S  P   L V+ +M  EG++ ++ +F  +  +
Sbjct: 426  VYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSS 485

Query: 127  IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
                E  + G QV G   + GF     V   L+ M+ +   + +A  +FD M+  DI+ W
Sbjct: 486  CGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISW 545

Query: 187  SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
            + MI  Y  +GL  E L  F  M+  + E +   LS +LS CS   NL +G  +H  ++ 
Sbjct: 546  NAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVK 605

Query: 247  NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
              +  +  + +TL+T+Y+  G  + A+ +F  +  ++L+   +M++ Y + G+  D   I
Sbjct: 606  LGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKI 665

Query: 307  FD---QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
                 QM + D + W+A+I G+AEN  P EA+K +  ++  G+  + +TM+S ++A A+L
Sbjct: 666  LAELLQMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVS-LAATANL 724

Query: 364  GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
             VL++ Q++H  + K  F  DL V NA +DMY KCG +    ++  +   R+ +SW  +I
Sbjct: 725  AVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILI 784

Query: 424  NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
            +AFA HG  + A   F++M      P+ VTF+ +L AC+H GLVDEG   + SMT E+ +
Sbjct: 785  SAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGV 844

Query: 484  PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
             P  EH  C++DL GR+  L  A   ++ MP  PN + W SL+AACR+HG +ELA   A+
Sbjct: 845  FPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAE 904

Query: 544  QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
             LL+LDP  D A VL SN+ A   +W+DV  LRK M    I K+ ACS +++ ++V+ F 
Sbjct: 905  HLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFG 964

Query: 604  TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW-HSEKLALCY 662
              ++ H Q  +I  KL E++   K AGYVPD   AL D+ DEE++E  LW HSE+LAL +
Sbjct: 965  MGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDM-DEEQKEYNLWNHSERLALAF 1023

Query: 663  GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            GLI++ + S +RI KNLRVC DCH+  K VS +  R+IV+RD  RFHH+  G CSC DYW
Sbjct: 1024 GLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 132/545 (24%), Positives = 236/545 (43%), Gaps = 123/545 (22%)

Query: 106 LKMLNEGLT-IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA 164
           LK+L+   T +D   +  IL+     +   +G  +H      GFGSD  + T L+  Y  
Sbjct: 18  LKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVK 77

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
            G ++ AR +FD M  R +V W+ M+ GY QNG F++   LF +M+   V+ +   L   
Sbjct: 78  VGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANH-ALVDF 136

Query: 225 LSACSRAGNLSY------------------GEAVHEFIIDNNVALDAHLQSTL------- 259
            S C +  + SY                  G AV  F  D+     + L+  L       
Sbjct: 137 HSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTL 196

Query: 260 --------------------------------------ITMYANCGCMDMAKGLFDKVLL 281
                                                 I  YA  G +  AK L   +L 
Sbjct: 197 GSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLK 256

Query: 282 KNLVVSTAMVSG----------------YSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
           K+L  STA+++G                Y+++G++EDA+  FD+M EK++I W+++ISGY
Sbjct: 257 KDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGY 316

Query: 326 AENNHP---------------------------------QEALKLFNEMQVCGMKPDKVT 352
           A++ +                                  +EA+ LF +M   G++P+   
Sbjct: 317 AKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFM 376

Query: 353 MLSVISACAHLGVL-DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           + S+I+AC+  G + D+  ++H ++ K    GD+ V  A++  Y   G + +A+++FE M
Sbjct: 377 VASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEM 436

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE-- 469
              NV+SWTS++  ++  G+    L  + +M+ E +  N  TF  V  +C   GL+++  
Sbjct: 437 PDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC---GLLEDQV 493

Query: 470 -GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
            G ++   +  +Y           ++ +F   + + EA  + + M    +++ W ++++A
Sbjct: 494 LGYQVLGHII-QYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN-ECDIISWNAMISA 551

Query: 529 CRVHG 533
              HG
Sbjct: 552 YAHHG 556



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 122/439 (27%), Positives = 179/439 (40%), Gaps = 117/439 (26%)

Query: 205 LFEEMKMSNVEP---DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
           L E +K+ +  P   D  +  KIL  C        G  +H  +I N    D HL + LI 
Sbjct: 14  LAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLII 73

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS-------------------------- 295
            Y   G +  A+ +FD +  +++V  TAMVSGYS                          
Sbjct: 74  FYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHAL 133

Query: 296 -----RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
                + G++EDA  +F  M+E+D++ W+AMI GYA      ++  +F  M   G+ PD 
Sbjct: 134 VDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDC 193

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFG----------------GDLR-------- 386
            T+ SV+ A A  G L  A +IH  I +  +G                G LR        
Sbjct: 194 YTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKG 253

Query: 387 -----------------------VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
                                  + NA+IDMYAK G +E A+  F+ M  +NVISWTS+I
Sbjct: 254 MLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLI 313

Query: 424 NAFAIHGDA--------------RN-------------------ALIFFNKMKDESIDPN 450
           + +A HG                RN                   A+  F +M    ++PN
Sbjct: 314 SGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPN 373

Query: 451 GVTFIGVLYACSHAG-LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
           G     ++ ACS +G + DEG ++   +     +   Y     +V  +G   L+  A +L
Sbjct: 374 GFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTA-LVHFYGSIGLVYNAQKL 432

Query: 510 VETMPFAPNVVIWGSLMAA 528
            E MP   NVV W SLM  
Sbjct: 433 FEEMP-DHNVVSWTSLMVG 450



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 134/563 (23%), Positives = 241/563 (42%), Gaps = 116/563 (20%)

Query: 104 VFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGS------------- 150
           +F  ML  GL  D ++   +L+A A   GL+   Q+HG+ T+LG+GS             
Sbjct: 180 MFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYA 239

Query: 151 ------------------DPFVQT----------------GLVGMYGACGKILDARLMFD 176
                             D F  T                 L+ MY   G+I DA+  FD
Sbjct: 240 KNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFD 299

Query: 177 KMSYRDIV---------------------------------PWSVMIDGYFQNGLFDEVL 203
           +M  ++++                                  WS M+ GY + GL++E +
Sbjct: 300 EMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAV 359

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLS-YGEAVHEFIIDNNVALDAHLQSTLITM 262
            LF +M    VEP+  +++ +++ACSR+G ++  G  VH F++   +  D ++ + L+  
Sbjct: 360 GLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHF 419

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           Y + G +  A+ LF+++   N+V  T+++ GYS +G                        
Sbjct: 420 YGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSG------------------------ 455

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
                  +P E L ++  M+  G+  ++ T  +V S+C  L       ++  +I +  F 
Sbjct: 456 -------NPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFE 508

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
             + V N++I M++   S+E A  VF+ M   ++ISW +MI+A+A HG  R +L  F+ M
Sbjct: 509 DSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWM 568

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
           +    + N  T   +L  CS    +  GR I   +  +  +         ++ L+  A  
Sbjct: 569 RHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHG-LVVKLGLDSNVCICNTLLTLYSEAGR 627

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD-PDHDGALVLLSN 561
             +A ELV       +++ W S+MA     G+         +LLQ+  PD      L+  
Sbjct: 628 SEDA-ELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGG 686

Query: 562 IYAKDKRWQDVGELRKSMKERGI 584
            +A+++   +  +  K ++E+GI
Sbjct: 687 -HAENEEPNEAVKAYKLIREKGI 708



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/499 (23%), Positives = 227/499 (45%), Gaps = 71/499 (14%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL-EGMQVHGLGTKLGFGSDPFVQTG 157
           + A+ +F +M   G+  + F    ++ A +R+  +  EG QVHG   K G   D +V T 
Sbjct: 356 EEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTA 415

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           LV  YG+ G + +A+ +F++M   ++V W+ ++ GY  +G   EVLN+++ M+   V  +
Sbjct: 416 LVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGN 475

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           +   + + S+C    +   G  V   II         + ++LI+M+++   ++ A  +FD
Sbjct: 476 QNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFD 535

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                                           M E D+I W+AMIS YA +   +E+L+ 
Sbjct: 536 -------------------------------HMNECDIISWNAMISAYAHHGLCRESLRC 564

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F+ M+    + +  T+ S++S C+ +  L   + IH  + K     ++ + N ++ +Y++
Sbjct: 565 FHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSE 624

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFA-----------------------------I 428
            G  E A  VF+ M  R++ISW SM+  +                              I
Sbjct: 625 AGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALI 684

Query: 429 HGDARN-----ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
            G A N     A+  +  ++++ I  N +T +  L A ++  +++EG+++   +  +   
Sbjct: 685 GGHAENEEPNEAVKAYKLIREKGIPANYITMVS-LAATANLAVLEEGQQLHG-LVIKLGF 742

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
                     +D++G+   + + L+++   P   + + W  L++A   HG  + A     
Sbjct: 743 ESDLHVTNAAMDMYGKCGEMHDVLKML-PQPINRSRLSWNILISAFARHGCFQKARETFH 801

Query: 544 QLLQLD--PDHDGALVLLS 560
           ++L+L   PDH   + LLS
Sbjct: 802 EMLKLGPKPDHVTFVSLLS 820



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 137/327 (41%), Gaps = 35/327 (10%)

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
           EALKL +       + D    L ++  C       Q   IH ++  N FG DL +N  +I
Sbjct: 16  EALKLLSSNPT---RLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLI 72

Query: 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
             Y K G + +AR VF+ M  R+V+SWT+M++ ++ +G    A + F+ M+   +  N  
Sbjct: 73  IFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHA 132

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
               ++   S  G +++   +F +M     +      +  M+  +       ++  +  +
Sbjct: 133 ----LVDFHSKCGKMEDASYLFGTMMERDVVS-----WNAMIGGYAVQGFADDSFCMFRS 183

Query: 513 M---PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD-PDHDGALVLLSNIYAKDKR 568
           M      P+    GS++ A    G + +A      + QL    +D    LL N YAK+  
Sbjct: 184 MLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGS 243

Query: 569 WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
            +   +LRK M ++ +    A             L    +H   + IY   N +I     
Sbjct: 244 LRSAKDLRKGMLKKDLFSSTA-------------LITGYAH---EGIYTMGNALIDMYAK 287

Query: 629 AGYVPDIHSALVDLEDEEKREVILWHS 655
           +G + D   A  ++E+   + VI W S
Sbjct: 288 SGEIEDAKRAFDEMEE---KNVISWTS 311


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/655 (35%), Positives = 371/655 (56%), Gaps = 12/655 (1%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           +AL +F  +P       N  + A+S S R + AL + + M ++G+ +D  ++   L A A
Sbjct: 242 HALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACA 301

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           R   L  G Q+H    +     DP+V + LV +Y   G   +A+ +F+ +  R+ V W+V
Sbjct: 302 RLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTV 361

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I G+ Q G F E + LF +M+   +  D+  L+ ++S C    +L  G  +H   + + 
Sbjct: 362 LISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSG 421

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
                 + ++LI+MYA C  +  A+ +F  +  K++V  T+M++ YS+ G V  AR  FD
Sbjct: 422 QIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFD 481

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLD 367
            M EK++I W+AM+  Y ++   ++ L+++  M     ++PD VT +++   CA LG   
Sbjct: 482 GMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANK 541

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
              +I     K     D  V NA+I MY+KCG +  AR+VF+ +  ++++SW +MI  ++
Sbjct: 542 LGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYS 601

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            HG  + A+  F+ +      P+ ++++ VL  CSH+GLV EG+  F  M   +NI P  
Sbjct: 602 QHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGL 661

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
           EH+ CMVDL GRA  L EA +L++ MP  P   +WG+L++AC++HG  ELAE AAK + +
Sbjct: 662 EHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFE 721

Query: 548 LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
           LD    G+ +L++ IYA   +  D  ++RK M+++GI K    S +E++N+V+ F   D 
Sbjct: 722 LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDV 781

Query: 608 SHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS 667
           SH Q   I +KL+E++ ++   GYV           D  + E+   HSEKLA+ +GL++ 
Sbjct: 782 SHPQVLAIRKKLDELMEKIARLGYVR---------TDSTRSEI--HHSEKLAVAFGLMTL 830

Query: 668 KKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
                I I+KNLR+C DCH  IKL+S V  RE VIRD  RFHH+  G CSC DYW
Sbjct: 831 PTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 885



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/466 (25%), Positives = 215/466 (46%), Gaps = 71/466 (15%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIA 128
           A+ +F ++PA      N  +     S +   +L+ FL M   G +  + F+    +K+  
Sbjct: 110 AVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCG 169

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI-LDARL-------------- 173
                   +Q+  +  K     D  V   LV M+  CG + L +RL              
Sbjct: 170 ALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNS 229

Query: 174 ----------------MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
                           +FD M  RD+V W++M+    Q+G   E L++  +M+   V  D
Sbjct: 230 MLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLD 289

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
               +  L+AC+R  +L +G+ +H  +I N   +D ++ S L+ +YA  GC   AKG+F+
Sbjct: 290 STTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFN 349

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
            +  +N V  T ++SG+ + G                  C++             E+++L
Sbjct: 350 SLHDRNNVAWTVLISGFLQYG------------------CFT-------------ESVEL 378

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           FN+M+   M  D+  + ++IS C     L   +++H    K+     + V+N++I MYAK
Sbjct: 379 FNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAK 438

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           C +L+SA  +F  M  ++++SWTSMI A++  G+   A  FF+ M ++++    +T+  +
Sbjct: 439 CDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV----ITWNAM 494

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF-GRANL 502
           L A    G  ++G  ++  M +E  + P +  Y   V LF G A+L
Sbjct: 495 LGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTY---VTLFKGCADL 537



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 186/379 (49%), Gaps = 3/379 (0%)

Query: 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-NVEPDEMV 220
           Y   G++ DA  +F +M  RD+  W+ ++ GYFQ+  +   L  F  M  S +  P+   
Sbjct: 101 YAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFT 160

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           L+  + +C   G  S    +   +   +   D+ + + L+ M+  CG +D+A  LF ++ 
Sbjct: 161 LACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIK 220

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
              +    +M++GY +   V+ A  +FD M E+D++ W+ M+S  +++   +EAL +  +
Sbjct: 221 EPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVD 280

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQ  G++ D  T  S ++ACA L  L   +++H  + +N    D  V +A++++YAK G 
Sbjct: 281 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGC 340

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
            + A+ VF  +  RN ++WT +I+ F  +G    ++  FN+M+ E +  +      ++  
Sbjct: 341 FKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISG 400

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           C     +  GR++ +       I         ++ ++ + + L+ A  +   M    ++V
Sbjct: 401 CCSRMDLCLGRQLHSLCLKSGQIQAVVVS-NSLISMYAKCDNLQSAEAIFRFMN-EKDIV 458

Query: 521 IWGSLMAACRVHGEIELAE 539
            W S++ A    G +  A 
Sbjct: 459 SWTSMITAYSQVGNVAKAR 477



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/496 (22%), Positives = 207/496 (41%), Gaps = 83/496 (16%)

Query: 17  TAISSCSSLTHMKQTHAQILK-LSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
           TA +  SSL   KQ HAQ+++ L H      S L++L   S             A  +F+
Sbjct: 298 TACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKE--------AKGVFN 349

Query: 76  QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
            +    +      I           ++++F +M  E +T+D+F+   ++        L  
Sbjct: 350 SLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCL 409

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGAC------------------------------ 165
           G Q+H L  K G      V   L+ MY  C                              
Sbjct: 410 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQ 469

Query: 166 -GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSK 223
            G +  AR  FD MS ++++ W+ M+  Y Q+G  ++ L +++ M     V PD +    
Sbjct: 470 VGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVT 529

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           +   C+  G    G+ +    +   + +D  + + +ITMY+ CG +  A+ +FD + +K+
Sbjct: 530 LFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKD 589

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           +V   AM++GYS+ G  + A  IFD ++++                              
Sbjct: 590 IVSWNAMITGYSQHGMGKQAIEIFDDILKR------------------------------ 619

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID----KNAFGGDLRVNNAIIDMYAKCG 399
            G KPD ++ ++V+S C+H G++ + +    Y D     +     L   + ++D+  + G
Sbjct: 620 -GAKPDYISYVAVLSGCSHSGLVQEGK---FYFDMMKRAHNISPGLEHFSCMVDLLGRAG 675

Query: 400 SLESAREVFERMRRRNVIS-WTSMINAFAIHGDARNA-LIFFNKMKDESIDPNGVTFIGV 457
            L  A+++ + M  +     W ++++A  IHG+   A L   +  + +S D      +  
Sbjct: 676 HLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAK 735

Query: 458 LYACSHAGLVDEGREI 473
           +YA   AG  D+  +I
Sbjct: 736 IYA--DAGKSDDSAQI 749



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 164/363 (45%), Gaps = 41/363 (11%)

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM-DMAKGLFDKVLLKN 283
           L +C   G L+   A+H  ++   +A    LQ+TL+  Y +CG + D  + L   +   N
Sbjct: 31  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPN 90

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           ++    M++GY++ G++ DA  +F +M  +D+  W+ ++SGY ++     +L+ F  M  
Sbjct: 91  VITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHR 150

Query: 344 CGMK-PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS-- 400
            G   P+  T+   + +C  LG    A ++   + K     D  V  A++DM+ +CG+  
Sbjct: 151 SGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVD 210

Query: 401 -----------------------------LESAREVFERMRRRNVISWTSMINAFAIHGD 431
                                        ++ A E+F+ M  R+V+SW  M++A +  G 
Sbjct: 211 LASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 270

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT-NEYNIPPKYEHY 490
            R AL     M+ + +  +  T+   L AC+    +  G+++ A +  N  +I P     
Sbjct: 271 VREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA-- 328

Query: 491 GCMVDLFGRANLLREALELVETM----PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
             +V+L+ ++   +EA  +  ++      A  V+I G L   C     +EL      +L+
Sbjct: 329 SALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTE-SVELFNQMRAELM 387

Query: 547 QLD 549
            LD
Sbjct: 388 TLD 390


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/599 (36%), Positives = 341/599 (56%), Gaps = 32/599 (5%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           ++ A AR   L +   +H       F    F+   L+ +Y  CG + DAR +FD M  RD
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +  W+ +I GY QN + DE L L   M     +P+    + +L A   + +   GE +H 
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHA 189

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
             +  +   D ++ S L+ MYA                               R G+++ 
Sbjct: 190 LTVKYDWHDDVYVGSALLDMYA-------------------------------RCGRMDM 218

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           A  +FDQ+  K+ + W+A+I+G+A     +  L +F EMQ  G +    T  SV SA A 
Sbjct: 219 AIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAG 278

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           +G L+Q + +H ++ K+       V N I+DMYAK GS+  AR+VF+R+ +++V++W SM
Sbjct: 279 IGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSM 338

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           + AFA +G  R A+  F +M+   +  N +TF+ +L ACSH GLV EG++ F  M  EYN
Sbjct: 339 LTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF-DMMKEYN 397

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           + P+ +HY  +VDL GRA LL +AL  +  MP  P   +WG+L+ +CR+H   ++ +FAA
Sbjct: 398 LEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAA 457

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
             + +LDPD  G  VLL NIYA   +W     +RK MK  G+ KE ACS +E+ N V+ F
Sbjct: 458 DHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMF 517

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
           +  D +H ++++IY+K  E+  +++ AGYVP+    L+ ++++E++  + +HSEK+AL +
Sbjct: 518 VANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAF 577

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
            LI+    + IRI+KN+R+C DCH+  + +SKV+ REIV+RD  RFHH+  G CSC DY
Sbjct: 578 ALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 170/365 (46%), Gaps = 32/365 (8%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F  +PA         I   + +  P  AL +   ML      + F+F  +LKA   
Sbjct: 118 ARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGA 177

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           +     G Q+H L  K  +  D +V + L+ MY  CG++  A  +FD++  ++ V W+ +
Sbjct: 178 SASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNAL 237

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G+ + G  +  L +F EM+ +  E      S + SA +  G L  G+ VH  +I +  
Sbjct: 238 IAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGE 297

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            L A + +T++ MYA  G M  A+ +FD+V  K++V   +M++ +++ G           
Sbjct: 298 RLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGL---------- 347

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                                 +EA+  F EM+ CG+  +++T LS+++AC+H G++ + 
Sbjct: 348 ---------------------GREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEG 386

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE-VFERMRRRNVISWTSMINAFAI 428
           ++    + +     ++     ++D+  + G L  A   +F+   +     W +++ +  +
Sbjct: 387 KQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRM 446

Query: 429 HGDAR 433
           H +A+
Sbjct: 447 HKNAK 451


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/622 (36%), Positives = 357/622 (57%), Gaps = 31/622 (4%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           +L++F +M   G   + F+    LK+    E    G  VHG   K  +  D FV   L+ 
Sbjct: 221 SLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLE 280

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           +Y   G+I+DA+ +F++M   D++PWS+MI  Y Q+    E L+LF  M+ ++V P+   
Sbjct: 281 LYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFT 340

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
            + +L AC+ + +L  G+ +H  ++                                  L
Sbjct: 341 FASVLQACASSVSLDLGKQIHSCVLKFG-------------------------------L 369

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
             N+ VS A++  Y++ G++E++  +F+++ +++ + W+ +I GY +    + A+ LF  
Sbjct: 370 NSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTH 429

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M    M+P +VT  SV+ A A L  L+   +IH    K  +  D  V N++IDMYAKCG 
Sbjct: 430 MLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGR 489

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +  AR  F++M +R+ +SW +MI  +++HG +  AL  F+ M+     PN +TF+GVL A
Sbjct: 490 INDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSA 549

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CS+AGL+ +G+  F SM+ +Y+I P  EHY CMV L GR     EA++L+  + + P+V+
Sbjct: 550 CSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVM 609

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           +W +L+ AC +H +++L    A+ +L+++P  D   VLLSN+YA   RW +V  +RK M+
Sbjct: 610 VWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQ 669

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           ++ + KE   S +E    V+ F   D SH     I   L  +  + + AGYVPD ++ L+
Sbjct: 670 KKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLL 729

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D++D+EK   +  HSE+LAL YGLI +     IRI+KNLR+C DCH  +KL+SKV  REI
Sbjct: 730 DVQDDEKERHLWVHSERLALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREI 789

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           VIRD  RFHH++ GVCSC DYW
Sbjct: 790 VIRDINRFHHFRHGVCSCGDYW 811



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 138/506 (27%), Positives = 246/506 (48%), Gaps = 42/506 (8%)

Query: 29  KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKF 88
           K  H  ILK   S      L  + +L +F + +   +SL  A  +F ++P   +      
Sbjct: 55  KHLHCHILKRGTS----LDLFAQNILLNFYVQS---NSLQDASKLFDEMPQTNTISFVTL 107

Query: 89  IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148
            +  S  H+   AL   L++  EG  ++ F F  +LK +   +       +H    KLG 
Sbjct: 108 AQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGH 167

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
            +D FV T L+  Y   G +  AR +FD +  +D+V W+ M+  Y +N  ++E L LF +
Sbjct: 168 HADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQ 227

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M++   +P+   +S  L +C      + G++VH                         GC
Sbjct: 228 MRIMGYKPNNFTISGALKSCLGLEAFNVGKSVH-------------------------GC 262

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
               KG +D     +L V  A++  Y+++G++ DA+ +F++M + DLI WS MI+ YA++
Sbjct: 263 --ALKGCYD----HDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQS 316

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
           +  +EAL LF  M+   + P+  T  SV+ ACA    LD  ++IH  + K     ++ V+
Sbjct: 317 DRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVS 376

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           NAI+D+YAKCG +E++ ++FE +  RN ++W ++I  +   GD   A+  F  M +  + 
Sbjct: 377 NAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQ 436

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFA-SMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
           P  VT+  VL A +    ++ G +I + ++   YN          ++D++ +   + +A 
Sbjct: 437 PTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVA--NSLIDMYAKCGRINDAR 494

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHG 533
              + M    + V W +++    +HG
Sbjct: 495 LTFDKMN-KRDEVSWNAMICGYSMHG 519



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 205/437 (46%), Gaps = 36/437 (8%)

Query: 115 IDRFSFPPILKAIAR-AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
           +D  S+  +L+ I R     + G  +H    K G   D F Q  L+  Y     + DA  
Sbjct: 32  LDSHSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASK 91

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +FD+M   + + +  +  GY ++  F + L+    +     E +  V + +L        
Sbjct: 92  LFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLL----- 146

Query: 234 LSYGEAVHEFIIDNNVALD-AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
                          V++D AHL            C  +   ++      +  V TA++ 
Sbjct: 147 ---------------VSMDLAHL------------CWTLHACVYKLGHHADAFVGTALID 179

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
            YS  G V+ AR +FD +  KD++ W+ M++ YAEN   +E+L+LFN+M++ G KP+  T
Sbjct: 180 AYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFT 239

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           +   + +C  L   +  + +H    K  +  DL V  A++++YAK G +  A+ +FE M 
Sbjct: 240 ISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMP 299

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
           + ++I W+ MI  +A    ++ AL  F +M+  S+ PN  TF  VL AC+ +  +D G++
Sbjct: 300 KTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQ 359

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
           I + +  ++ +         ++D++ +   +  +++L E +P   N V W +++      
Sbjct: 360 IHSCVL-KFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELP-DRNDVTWNTIIVGYVQL 417

Query: 533 GEIELAEFAAKQLLQLD 549
           G+ E A      +L+ D
Sbjct: 418 GDGERAMNLFTHMLEHD 434



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 190/426 (44%), Gaps = 43/426 (10%)

Query: 9   KPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           KP     S A+ SC  L      K  H   LK  + H     L + + L      +    
Sbjct: 234 KPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDH----DLFVGIALLELYAKS---G 286

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
            +  A  +F ++P       +  I   + S R K AL +FL+M    +  + F+F  +L+
Sbjct: 287 EIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQ 346

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A A +  L  G Q+H    K G  S+ FV   ++ +Y  CG+I ++  +F+++  R+ V 
Sbjct: 347 ACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVT 406

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ +I GY Q G  +  +NLF  M   +++P E+  S +L A +    L  G  +H   I
Sbjct: 407 WNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTI 466

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
                 D  + ++LI MYA CG ++ A+  FDK+  ++ V   AM+ GYS  G       
Sbjct: 467 KTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGM------ 520

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
                                      EAL LF+ MQ    KP+K+T + V+SAC++ G+
Sbjct: 521 -------------------------SMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGL 555

Query: 366 LDQAQRIHLYIDKNA-FGGDLRVNNAIIDMYAKCGSLESAREVF-ERMRRRNVISWTSMI 423
           L + Q     + K+      +     ++ +  + G  + A ++  E   + +V+ W +++
Sbjct: 556 LYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALL 615

Query: 424 NAFAIH 429
            A  IH
Sbjct: 616 GACVIH 621


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/589 (39%), Positives = 331/589 (56%), Gaps = 30/589 (5%)

Query: 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
           EG ++H   +  GF      Q GLV MY  CG + +AR +F+ +  R +V WS MI  Y 
Sbjct: 3   EGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYA 62

Query: 195 QNGLFDEVLNLFEEMKM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
            +G   E L LF  M+    VEP+ M  + + +AC    +L  G  +H            
Sbjct: 63  LHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIH------------ 110

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
                          + MA G        N ++  A+++ Y R G +E+AR +FD M   
Sbjct: 111 --------------ALAMASGELKS---SNAILENALLNMYVRCGSLEEARKVFDTMDHP 153

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
           D   W++MI+   EN    EAL+LF+ M + G+ P  VT+ SV++ACA  G L   ++IH
Sbjct: 154 DAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIH 213

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
             +D + F   +    A++DMYAKCGSLE + +VF  M  RN +SWT+MI A A HG   
Sbjct: 214 SRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGD 273

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
            AL  F +M  E +  +  TFI VL ACSHAGL+ E  E F SM  +Y I P   HY   
Sbjct: 274 EALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRA 333

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553
           +D  GRA  L++A EL+ +MPF P  + W +L+ ACR+H + E A   A+ L +L P+  
Sbjct: 334 LDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPEDS 393

Query: 554 GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTD 613
            A  LL N+YA   R+ D   +RK M +RG+ K    S IE+ N+V+EF+  DR+H   D
Sbjct: 394 MAYTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRD 453

Query: 614 QIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCI 673
           +I  +L ++   ++ AGYVP+    L  + +EEK ++I  HSEKLA+ +GLI++   + +
Sbjct: 454 EILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPL 513

Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            IVKNLRVC DCH   K+++K+  R IV+RD  RFHH++DG CSCKDYW
Sbjct: 514 LIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFEDGQCSCKDYW 562



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 97/172 (56%), Gaps = 3/172 (1%)

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           +++ +RIH  +    F       N ++ MYAKCG L+ AR +F  +  R V+SW++MI A
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 426 FAIHGDARNALIFFNKMK-DESIDPNGVTFIGVLYACSHAGLVDEGREIFA-SMTNEYNI 483
           +A+HG  + AL+ F++M+ D  ++PN +TF GV  AC     +++GREI A +M +    
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
                    +++++ R   L EA ++ +TM   P+   W S++ AC  + E+
Sbjct: 121 SSNAILENALLNMYVRCGSLEEARKVFDTMDH-PDAFSWTSMITACTENCEL 171



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 152/356 (42%), Gaps = 22/356 (6%)

Query: 44  SQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALK 103
           S N++L   LL  +        SL  A  +F  +  P +      I A + +     AL+
Sbjct: 121 SSNAILENALLNMY----VRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALE 176

Query: 104 VFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYG 163
           +F +M  EG+     +   +L A A +  L  G Q+H      GF S    QT L+ MY 
Sbjct: 177 LFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYA 236

Query: 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSK 223
            CG +  +  +F  M  R+ V W+ MI    Q+G  DE L LF+EM +  +  D      
Sbjct: 237 KCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFIC 296

Query: 224 ILSACSRAGNLSYG-EAVHEFIIDNNVA-LDAHLQSTLITMYANCGCMDMAKGLF----- 276
           +L ACS AG +    E  H  + D  +A  + H    L T+    G +  A+ L      
Sbjct: 297 VLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTI-GRAGRLQDAEELIHSMPF 355

Query: 277 --DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
             + +  K L+ +  + S   RA +V +   +  ++  +D + ++ + + YA      + 
Sbjct: 356 HPETLTWKTLLNACRIHSQAERATKVAE---LLSKLAPEDSMAYTLLGNVYAATGRYGDQ 412

Query: 335 LKLFNEMQVCGMK--PDKVTMLSVISACAHLGVLDQAQ--RIHLYIDKNAFGGDLR 386
           +++   M   G+K  P K + + V +        D+A   R  + ++    GG +R
Sbjct: 413 MRVRKGMTDRGLKKVPGK-SFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMR 467


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/638 (36%), Positives = 364/638 (57%), Gaps = 33/638 (5%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR-AEGLLEGMQVHGLGT 144
           N  I  I+ S     A+ +F+++L  GL  D ++   +LKA +   EGL    Q+H    
Sbjct: 392 NSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAI 451

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           K    +D FV T L+  Y     + +A ++F + ++ D+V W+ M+ GY Q+    + L 
Sbjct: 452 KTNNVADSFVSTALIDAYSRNRCMKEAEVLFGRNNF-DLVAWNAMMSGYTQSHDGHKTLE 510

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           LF  M       D+  L+ +L  C     ++ G+ VH + I +   LD  + S ++ MY 
Sbjct: 511 LFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYV 570

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
            CG  DM+                              A+  FD +   D + W+ +ISG
Sbjct: 571 KCG--DMSA-----------------------------AQFAFDSIPVPDDVAWTTLISG 599

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
             EN   + AL +F++M++ G+ PD+ T+ ++  A + L  L+Q ++IH    K     D
Sbjct: 600 CIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSD 659

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
             V  +++DMYAKCGS++ A  +F+R+   N+ +W +M+   A HG+ + AL  F +M+ 
Sbjct: 660 PFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMES 719

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
             I P+ VTFIGVL ACSH+GLV E  +   SM  +Y I P+ EHY C+ D  GRA L++
Sbjct: 720 LGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVK 779

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
           EA  L+++M    +  ++ +L+AACRV G+ E  +  A +LL+L+P    A VLLSN+YA
Sbjct: 780 EAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYA 839

Query: 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVIS 624
              +W ++   R  MK   + K+   S IE+ N+++ F+  DRS+ QT+ IY+K+ ++I 
Sbjct: 840 AASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIR 899

Query: 625 ELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCED 684
           ++K  GYVP+    LVD+E+EEK   + +HSEKLA+ +GL+S+   + IR++KNLRVC D
Sbjct: 900 DIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGD 959

Query: 685 CHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           CHN +K +SKVY REIV+RD  RFH +KDG+CSC DYW
Sbjct: 960 CHNAMKYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 153/583 (26%), Positives = 269/583 (46%), Gaps = 68/583 (11%)

Query: 21  SCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAP 80
           S S L   K THA+IL L     +    L+  L++ +S       SL YA  +F ++P  
Sbjct: 58  STSDLMLGKCTHARILAL---EENPERFLVNNLISMYS----KCGSLTYARRVFDKMPER 110

Query: 81  PSRVSNKFIRAISWS-----HRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
                N  + A + S        K A  +F  +  + +   R +  P+LK    +  +  
Sbjct: 111 DLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCA 170

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
               HG   K+G   D FV   LV +Y   GK+ + R++F++M YRD+V W++M+  Y +
Sbjct: 171 SESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLE 230

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEM---VLSKILSACSRAGNLSYGE------AVHEFIID 246
            G  +E ++L      S + P+E+   +LS+I    S AG +   E      AV E II 
Sbjct: 231 MGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSE-IIS 289

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKG-----------------LFDKVLLKN------ 283
            N  L  +L +   +    C  MDM +                    D + L        
Sbjct: 290 RNKILSGYLHAGQYSALLKC-FMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMA 348

Query: 284 --------LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
                   L VS ++++ Y +  ++  AR +F+ M E+DLI W+++I+G A+++   EA+
Sbjct: 349 LKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAV 408

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGV-LDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
            LF ++  CG+KPD  TM SV+ A + L   L  +++IH++  K     D  V+ A+ID 
Sbjct: 409 CLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDA 468

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y++   ++ A  +F R    ++++W +M++ +    D    L  F  M  +    +  T 
Sbjct: 469 YSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTL 527

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH----YGCMVDLFGRANLLREALELV 510
             VL  C     +++G+++ A     Y I   Y+        ++D++ +   +  A    
Sbjct: 528 ATVLKTCGFLFAINQGKQVHA-----YAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAF 582

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPD 551
           +++P  P+ V W +L++ C  +GE E  L  F+  +L+ + PD
Sbjct: 583 DSIP-VPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPD 624



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 217/453 (47%), Gaps = 37/453 (8%)

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM 161
           LK F+ M+   L  D+ +F  +L    R + L  G QVH +  KLG      V   L+ M
Sbjct: 307 LKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINM 366

Query: 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221
           Y    KI  AR +F+ MS RD++ W+ +I G  Q+ L  E + LF ++    ++PD   +
Sbjct: 367 YCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTM 426

Query: 222 SKILSACSR-AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           + +L A S     LS  + +H   I  N   D+ + + LI  Y+   CM  A+ LF    
Sbjct: 427 TSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLF---- 482

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                                  R  FD      L+ W+AM+SGY +++   + L+LF  
Sbjct: 483 ----------------------GRNNFD------LVAWNAMMSGYTQSHDGHKTLELFAL 514

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M   G + D  T+ +V+  C  L  ++Q +++H Y  K+ +  DL V++ I+DMY KCG 
Sbjct: 515 MHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGD 574

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           + +A+  F+ +   + ++WT++I+    +G+   AL  F++M+   + P+  T   +  A
Sbjct: 575 MSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKA 634

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
            S    +++GR+I A+   + N          +VD++ +   + +A  L + +    N+ 
Sbjct: 635 SSCLTALEQGRQIHANAL-KLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMM-NIT 692

Query: 521 IWGSLMAACRVHGEIELAEFAAKQL--LQLDPD 551
            W +++     HGE + A    KQ+  L + PD
Sbjct: 693 AWNAMLVGLAQHGEGKEALQLFKQMESLGIKPD 725



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 83/162 (51%)

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F  IP P        I     +   + AL VF +M   G+  D F+   + KA +    L
Sbjct: 582 FDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTAL 641

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
            +G Q+H    KL   SDPFV T LV MY  CG I DA  +F ++   +I  W+ M+ G 
Sbjct: 642 EQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGL 701

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
            Q+G   E L LF++M+   ++PD++    +LSACS +G +S
Sbjct: 702 AQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVS 743


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/666 (35%), Positives = 372/666 (55%), Gaps = 42/666 (6%)

Query: 64  PSSLYYALSIFSQIPAPPSRVSN-KFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
           P S   AL+  S      +++SN + I+++    + K A++V    L++  +  + ++  
Sbjct: 27  PPSCSVALNNPSISSGAGAKISNNQLIQSLCKEGKLKQAIRV----LSQESSPSQQTYEL 82

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           ++        L + ++VH      G   DPF+ T L+GMY   G +  AR +FDK   R 
Sbjct: 83  LILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRT 142

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC----SRAGNLSYGE 238
           I  W+ +       G  +EVL L+ +M    VE D    + +L AC        +L  G+
Sbjct: 143 IYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGK 202

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
            +H  +     +   ++ +TL+ MYA  GC+D A  +F  + ++N+V  +AM++ Y    
Sbjct: 203 EIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACY---- 258

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM--QVCGMKPDKVTMLSV 356
                                      A+N    EAL+ F EM  +     P+ VTM+SV
Sbjct: 259 ---------------------------AKNGKAFEALRTFREMMRETKDSSPNSVTMVSV 291

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           + ACA L  L+Q + IH YI +      L V +A++ MY +CG LE  + VF+RM  R+V
Sbjct: 292 LQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDV 351

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           +SW S+I+++ +HG  + A+  F +M      P  VTF+ VL ACSH GLV+EG+ +F +
Sbjct: 352 VSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFET 411

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           M  ++ I P+ EHY CMVDL GRAN L EA ++V+ M   P   +WGSL+ +CR+HG +E
Sbjct: 412 MWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVE 471

Query: 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMN 596
           LAE A+++L  L+P + G  VLL++IYA+ + W +V  ++K ++ RG+ K      +E+ 
Sbjct: 472 LAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVR 531

Query: 597 NEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSE 656
            ++Y F++ D  +   +QI+  L ++  ++K  GY+P     L +LE EEK  ++L HSE
Sbjct: 532 RKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSE 591

Query: 657 KLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVC 716
           KLAL +GLI++ K   IRI KNLR+CEDCH F K +SK   +EI++RD  RFH +K+GVC
Sbjct: 592 KLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVC 651

Query: 717 SCKDYW 722
           SC DYW
Sbjct: 652 SCGDYW 657



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 204/442 (46%), Gaps = 49/442 (11%)

Query: 1   MSTLSQPTKPLTLPTSTAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSF 57
           +  LSQ + P        I  C   SSL+   + H  IL    +   Q+  L   L+  +
Sbjct: 66  IRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILD---NGSDQDPFLATKLIGMY 122

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117
           S       S+ YA  +F +       V N   RA++ +   +  L ++ KM   G+  DR
Sbjct: 123 S----DLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDR 178

Query: 118 FSFPPILKAIARAE----GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
           F++  +LKA   +E     L++G ++H   T+ G+ S  ++ T LV MY   G +  A  
Sbjct: 179 FTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASY 238

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM--KMSNVEPDEMVLSKILSACSRA 231
           +F  M  R++V WS MI  Y +NG   E L  F EM  +  +  P+ + +  +L AC+  
Sbjct: 239 VFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASL 298

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
             L  G+ +H +I+   +     + S L+TMY  CG +++ + +FD++  +++V   +++
Sbjct: 299 AALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLI 358

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
           S Y                           + GY      ++A+++F EM   G  P  V
Sbjct: 359 SSYG--------------------------VHGYG-----KKAIQIFEEMLANGASPTPV 387

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           T +SV+ AC+H G++++ +R+   + ++      +     ++D+  +   L+ A ++ + 
Sbjct: 388 TFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQD 447

Query: 411 MRRR-NVISWTSMINAFAIHGD 431
           MR       W S++ +  IHG+
Sbjct: 448 MRTEPGPKVWGSLLGSCRIHGN 469


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/623 (38%), Positives = 362/623 (58%), Gaps = 37/623 (5%)

Query: 106 LKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC 165
           L++L++     + ++  ++ +  R   L +G+ +H      G   DPF+ T L+ MY   
Sbjct: 67  LQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSEL 126

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
             I +AR +FDK   R I  W+ +       G   EVL+L+  M    V  D    + +L
Sbjct: 127 DSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVL 186

Query: 226 SAC----SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
            AC    +    L  G  +H  I+ +      H+ +TL+ MYA  GC+  A  +FD++ +
Sbjct: 187 KACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPV 246

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           KN+V  +AM++ YS+ G+                               P EAL+LF +M
Sbjct: 247 KNVVSWSAMIACYSKNGK-------------------------------PLEALELFRKM 275

Query: 342 QVCG--MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
            +    + P+ VTM+SV+ ACA L  L+Q + +H YI +      L V +A++ +YA+CG
Sbjct: 276 MLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCG 335

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           +LE    VFERM +R+V+SW S+I+++ IHG  R A+  F +M D+ + P+ ++F+ VL 
Sbjct: 336 NLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLG 395

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           ACSHAGLV+EG+ +F SM   + I P  EHY CMVDL GRAN L EA ++++ M   P  
Sbjct: 396 ACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGP 455

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
            +WGSL+ +CR+H  +ELAE A  +L +L+P + G  VLL++IYA+ K W +V  ++  +
Sbjct: 456 KVWGSLLGSCRIHCNVELAERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLL 515

Query: 580 KERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
           + RG+ K    S IE+  ++Y F++ D  + Q +Q++  L ++  E+K  GYVPD    L
Sbjct: 516 EARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVL 575

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
            DL+ EEK  ++L HSEKLAL +GLI+SKK   IRI KNLR+CEDCH+  K +SK   RE
Sbjct: 576 YDLDPEEKERIVLGHSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANRE 635

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           I++RD  RFH ++DGVCSC DYW
Sbjct: 636 ILVRDVNRFHLFQDGVCSCGDYW 658



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/437 (23%), Positives = 199/437 (45%), Gaps = 43/437 (9%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           +  LSQ   P        I SC+    + Q       L H    Q+  L   L+  +S  
Sbjct: 67  LQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYS-- 124

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
                S+  A  +F +       V N   RA++ +   +  L ++ +M   G+  DRF++
Sbjct: 125 --ELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTY 182

Query: 121 PPILKAIARAEG----LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
             +LKA   +E     LL G ++HG   + GF     + T L+ MY   G +L+A  +FD
Sbjct: 183 TYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFD 242

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE--PDEMVLSKILSACSRAGNL 234
           +M  +++V WS MI  Y +NG   E L LF +M + N +  P+ + +  +L AC+    L
Sbjct: 243 QMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAAL 302

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             G+ +H +I+   +     + S L+T+YA CG +++   +F+++  +++V   +++S Y
Sbjct: 303 EQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSY 362

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
                                      I G+      ++A+++F EM   G+ P  ++ +
Sbjct: 363 G--------------------------IHGFG-----RKAIQIFKEMIDQGLSPSPISFV 391

Query: 355 SVISACAHLGVLDQAQRI-HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR- 412
           SV+ AC+H G++++ + +    +  +     +     ++D+  +   L+ A ++ + MR 
Sbjct: 392 SVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRI 451

Query: 413 RRNVISWTSMINAFAIH 429
                 W S++ +  IH
Sbjct: 452 EPGPKVWGSLLGSCRIH 468



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 156/338 (46%), Gaps = 41/338 (12%)

Query: 204 NLFEEMKMSNVEPD--EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
           NL + +++ + EP+  +     ++ +C+R  +L  G  +H  +I +    D  L + LI 
Sbjct: 62  NLNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLIN 121

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
           MY+    +D A+ +FDK   + + V                               W+A+
Sbjct: 122 MYSELDSIDNARKVFDKTRKRTIYV-------------------------------WNAL 150

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC----AHLGVLDQAQRIHLYID 377
                   + +E L L+  M   G+  D+ T   V+ AC    A + +L   + IH +I 
Sbjct: 151 FRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHIL 210

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           ++ F G + +   ++DMYA+ G + +A  VF++M  +NV+SW++MI  ++ +G    AL 
Sbjct: 211 RHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALE 270

Query: 438 FFNKMKDESID--PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
            F KM  E+ D  PN VT + VL AC+    +++G+ +   +     +         +V 
Sbjct: 271 LFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRR-GLDSILPVVSALVT 329

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           ++ R   L     + E M    +VV W SL+++  +HG
Sbjct: 330 VYARCGNLELGHRVFERME-KRDVVSWNSLISSYGIHG 366


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/545 (39%), Positives = 335/545 (61%), Gaps = 31/545 (5%)

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           M + D V W+ +I G  + G  ++ L+ F++M+  +++ DE  L  +L++ +    +   
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNA 60

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
            +VH  II         + + LI MYA                               + 
Sbjct: 61  ISVHCLIIKTGFEAYKLVNNALIDMYA-------------------------------KQ 89

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           G+++ A ++F +MV+KD++ W+++++GY+ N   +EA+KLF +M++ G+ PD++ + SV+
Sbjct: 90  GKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVL 149

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
           SACA L V+D  Q+IH  + K+     L V+N+++ MYAKCGS+  A   F+ M  R+VI
Sbjct: 150 SACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVI 209

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
           SWT++I  +A +G  +++L F+++M      P+ +TFIG+L+ACSH GL+  GR  F +M
Sbjct: 210 SWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAM 269

Query: 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537
              Y I P  EHY CM+DL GR+  L EA  L+  M  AP+ V+W +L+AACRVH E+EL
Sbjct: 270 DKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELEL 329

Query: 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNN 597
            E AAK L +L+P +    V+LSN+Y+   +W+D   +R+ M+ RGI KE   S IE N+
Sbjct: 330 GEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKEPGYSWIETNS 389

Query: 598 EVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEK 657
           +V  F++ DR+H   ++IY K++E+I  +K AGYVPD+  AL D +DE K   + +HSEK
Sbjct: 390 KVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVPDMSFALHDTDDEVKELGLAYHSEK 449

Query: 658 LALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCS 717
           LA+ +GL++  + + IRI KNLRVC DCH  +K  SKVYAR I++RD   FHH+ +G CS
Sbjct: 450 LAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYTSKVYARHIILRDSNCFHHFTEGRCS 509

Query: 718 CKDYW 722
           C DYW
Sbjct: 510 CGDYW 514



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 167/332 (50%), Gaps = 35/332 (10%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL  F KM +  + ID ++ P +L + A  + +   + VH L  K GF +   V   L+ 
Sbjct: 25  ALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALID 84

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY   GK+  A ++F KM  +D+V W+ ++ GY  NG ++E + LF +M++S V PD++ 
Sbjct: 85  MYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIA 144

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           ++ +LSAC+    + +G+ +H  ++ + +     + ++L+TMYA CG +  A   FD + 
Sbjct: 145 VASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMP 204

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            ++++  TA++ GY++ G+ + +   +DQM+                             
Sbjct: 205 TRDVISWTALIVGYAQNGRGKHSLQFYDQMI----------------------------- 235

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKC 398
               G KPD +T + ++ AC+H G+L   +     +DK  +G      +   +ID+  + 
Sbjct: 236 --ATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDK-VYGIKPGPEHYACMIDLLGRS 292

Query: 399 GSLESAREVFERM-RRRNVISWTSMINAFAIH 429
           G L  A+ +  +M    + + W +++ A  +H
Sbjct: 293 GKLAEAKGLLNQMVVAPDAVVWKALLAACRVH 324



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 4/227 (1%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A+ +FS++           +   S +   + A+K+F KM   G+  D+ +   +L A A 
Sbjct: 95  AIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAE 154

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              +  G Q+H    K G  S   V   LV MY  CG I+DA   FD M  RD++ W+ +
Sbjct: 155 LTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTAL 214

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY QNG     L  +++M  +  +PD +    +L ACS  G L  G A  E  +D   
Sbjct: 215 IVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFE-AMDKVY 273

Query: 250 ALDAHLQ--STLITMYANCGCMDMAKGLFDK-VLLKNLVVSTAMVSG 293
            +    +  + +I +    G +  AKGL ++ V+  + VV  A+++ 
Sbjct: 274 GIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAA 320


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/471 (44%), Positives = 308/471 (65%)

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           D  L + ++  Y +   +  A+ +FD + +++LV    M+ GY+  G+V  AR IFD   
Sbjct: 22  DVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTE 81

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           ++D   WS+MIS YA++   +EAL+L+ EM    + PD +T++SV+SAC+ LG L     
Sbjct: 82  DRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAE 141

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           +H +++ N    DL++  A+IDMYAKCG +ESA+ VF+RM  ++V +W+SMI   A HG 
Sbjct: 142 VHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGL 201

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
              +L  F+KM  E + PNGVTF+GVL AC+H GLV EG++ F SM   + I P  EHYG
Sbjct: 202 GHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYG 261

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           CMVDL GR+  + EA +L+ +M F P+ +IW +L+ ACR+H  +E+AE A  +L  LDP 
Sbjct: 262 CMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPL 321

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
            DG  VLLSNIYA+   W+ V E+RK+++   I +    S IE + +++EF++ DR H +
Sbjct: 322 GDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPR 381

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS 671
           + +IY  L E++  LK AGY P     L D++++ K   +  HSEKLA+ + L+++   S
Sbjct: 382 SKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPARS 441

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            IRI KNLR CEDCH+ +KL+S VY R++++RDR RFHH+ +G CSCKDYW
Sbjct: 442 TIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 492



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 143/292 (48%), Gaps = 35/292 (11%)

Query: 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221
           Y   G++  AR +FD    RD   WS MI  Y ++    E L L+ EM  +++ PD + L
Sbjct: 64  YAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITL 123

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
             ++SACS  G L+ G  VH F+  N + LD  L + LI MYA CG ++ A+ +FD+   
Sbjct: 124 VSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDR--- 180

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
                                       M EKD+  WS+MI G A +    E+L LF++M
Sbjct: 181 ----------------------------MPEKDVQTWSSMIIGLANHGLGHESLSLFSKM 212

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK-NAFGGDLRVNNAIIDMYAKCGS 400
              GMKP+ VT + V+ AC H+G++ + ++    +++ +     +     ++D+  + G 
Sbjct: 213 ISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGH 272

Query: 401 LESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           +E AR++   M    + I W +++ A  IH +   A     K++   +DP G
Sbjct: 273 VEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLR--VLDPLG 322



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 140/355 (39%), Gaps = 76/355 (21%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           +  I A + S R K AL+++ +M    +  D  +   ++ A +    L  G +VH     
Sbjct: 89  SSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVES 148

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
                D  + T L+ MY  CG I  A+ +FD+M  +D+  WS MI G   +GL  E L+L
Sbjct: 149 NRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSL 208

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           F +M    ++P+ +    +L AC+  G +S G+    F   N V    H     +  Y  
Sbjct: 209 FSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKY--FRSMNEV----HGIEPTVEHY-- 260

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV-EKDLICWSAMISG 324
            GC                     MV    R+G VE+AR +   M  E D I W A++  
Sbjct: 261 -GC---------------------MVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLG- 297

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
                    A ++   +++               A A L VLD     H  +  N     
Sbjct: 298 ---------ACRIHKNVEIAE------------EAMAKLRVLDPLGDGHYVLLSN----- 331

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNV--------ISWTSMINAFAIHGD 431
                    +YA+  S E   E+ + +RR N+        I W   I+ F + GD
Sbjct: 332 ---------IYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEF-VSGD 376


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/592 (37%), Positives = 352/592 (59%), Gaps = 36/592 (6%)

Query: 167 KILDARL-MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           K LD  L +F    + ++  ++ +I G  +N  F+  ++ F  M   ++ PD + L  +L
Sbjct: 86  KSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVL 145

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK------- 278
            + +   ++  G  +H  ++   +  D+ ++ +L+ MY   G +     LFD+       
Sbjct: 146 KSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKA 205

Query: 279 --VLLKNLVVS--------------------------TAMVSGYSRAGQVEDARLIFDQM 310
             +LL N++++                           ++++G+ R G ++ AR +F QM
Sbjct: 206 ESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQM 265

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
            EK+++ W+ MI+G+++N   ++AL +F  M   G++P+ +T++S + AC  +G L   +
Sbjct: 266 PEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGE 325

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
           RIH Y+  N F  +  +  A++DMYAKCG+++SA  VF   + +++++W+ MI  +AIHG
Sbjct: 326 RIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHG 385

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
               AL  F KMK   I+P+ V F+ +L ACSH+G VD+G   F SM  +Y+I P  +HY
Sbjct: 386 CFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHY 445

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
             +VDL GRA  L EAL  +++MP  P+ VIWG+L  ACR H  IE+AE  A++LLQL+P
Sbjct: 446 TLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEP 505

Query: 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK 610
            H G+ V LSN+YA   RW+DV  +R  MK RG+ K+   S IE+  +V+ F+  D +H 
Sbjct: 506 KHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHV 565

Query: 611 QTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD 670
           + ++I  KL E+ +  K  GY+P+    L ++E+EEK + +  HSEKLAL +GLIS+   
Sbjct: 566 RAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPG 625

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S IRIVKNLRVC DCH+ +K  SK+  REI++RD  RFHH+KDG CSC DYW
Sbjct: 626 STIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 127/516 (24%), Positives = 215/516 (41%), Gaps = 117/516 (22%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           I + ++L  + Q HAQI    H+  S + ++ +L+ +S SL      SL YALSIF    
Sbjct: 47  IHASNTLPQLHQIHAQIFL--HNLFSNSRVVTQLISSSCSL-----KSLDYALSIFRCFD 99

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P   V N  IR ++ + R + ++  F+ ML   +  DR + P +LK++A    +  G  
Sbjct: 100 HPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRC 159

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMY---------------------------------GAC 165
           +HG   KLG   D FV+  LV MY                                 G C
Sbjct: 160 LHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCC 219

Query: 166 --GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN---------- 213
             G +  A  +F+ M  R+   W+ +I+G+ +NG  D    LF +M   N          
Sbjct: 220 KVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMING 279

Query: 214 ---------------------VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
                                V P+++ +   L AC++ G L  GE +H ++  N   L+
Sbjct: 280 FSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLN 339

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             + + L+ MYA CG +  A  +F +   K+L+                           
Sbjct: 340 RGIGTALVDMYAKCGNIKSASRVFVETKGKDLLT-------------------------- 373

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ---- 368
                WS MI G+A +    +AL+ F +M+  G+ PD+V  L++++AC+H G +DQ    
Sbjct: 374 -----WSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNF 428

Query: 369 --AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINA 425
             + R+   I+       ++    I+D+  + G L+ A    + M    + + W ++  A
Sbjct: 429 FESMRLDYSIEPT-----MKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCA 483

Query: 426 FAIHGDARNALIFFNK-MKDESIDPNGVTFIGVLYA 460
              H +   A +   K ++ E   P    F+  +YA
Sbjct: 484 CRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYA 519


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/708 (34%), Positives = 380/708 (53%), Gaps = 42/708 (5%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV 84
           L H+  T  Q   L H+      +++    TS         +LY      +Q     S  
Sbjct: 145 LNHLLNTAIQTRSLKHATQIHTQIIINNY-TSLPFLFNNLINLYAKCGCLNQALLLFSIT 203

Query: 85  SNKFIRAISWSHRPKH---------ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
            + F   ++W+    H         AL +F +M   G   ++F+F  IL A A    +L 
Sbjct: 204 HHHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLH 263

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G Q+H L  K GF ++ FV T LV MY  C  +  A  +FD+M  R++V W+ MI G+F 
Sbjct: 264 GQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFH 323

Query: 196 NGLFDEVLNLFEE-MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           N L+D  + +F++ ++   V P+E+ +S +LSAC+  G L++G  VH  ++   +    +
Sbjct: 324 NNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTY 383

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           + ++L+ MY  C   D    LF  V  +++V                             
Sbjct: 384 VMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVT---------------------------- 415

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
              W+ ++ G+ +N+  +EA   F  M+  G+ PD+ +  +V+ + A L  L Q   IH 
Sbjct: 416 ---WNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHD 472

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
            I K  +  ++ +  ++I MYAKCGSL  A +VFE +   NVISWT+MI+A+ +HG A  
Sbjct: 473 QIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQ 532

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
            +  F  M  E I+P+ VTF+ VL ACSH G V+EG   F SM   +++ P  EHY CMV
Sbjct: 533 VIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMV 592

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DL GRA  L EA   +E+MP  P   +WG+L+ ACR +G +++   AA++L +++P + G
Sbjct: 593 DLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPG 652

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
             VLL+N+  +  R ++  E+R+ M   G+ KE  CS I++ N  + F   DRSH  +D+
Sbjct: 653 NYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDE 712

Query: 615 IYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIR 674
           IY+ L ++   +K  GYV +       LE+ E+ + + +HSEKLAL +GL++   DS IR
Sbjct: 713 IYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIR 772

Query: 675 IVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           I KNLR C  CH  +KL SK++ REI++RD  RFH + DG CSC DYW
Sbjct: 773 IKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 820



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 179/403 (44%), Gaps = 12/403 (2%)

Query: 15  TSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIF 74
           T ++I S S+ T M     Q+  L H H    ++ +   L          + ++ A+ +F
Sbjct: 247 TFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKC---ADMHSAVRVF 303

Query: 75  SQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIARAEGL 133
            Q+P       N  I     ++    A+ VF  +L E   I +  S   +L A A   GL
Sbjct: 304 DQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGL 363

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
             G QVHG+  K G     +V   L+ MY  C    +   +F  +  RD+V W+V++ G+
Sbjct: 364 NFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGF 423

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
            QN  F+E  N F  M+   + PDE   S +L + +    L  G A+H+ II      + 
Sbjct: 424 VQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNM 483

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM--- 310
            +  +LITMYA CG +  A  +F+ +   N++  TAM+S Y   G       +F+ M   
Sbjct: 484 CILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSE 543

Query: 311 -VEKDLICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQ 368
            +E   + +  ++S  +     +E L  FN M ++  M P       ++      G LD+
Sbjct: 544 GIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDE 603

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           A+R   +I+         V  A++    K G+L+  RE  ER+
Sbjct: 604 AKR---FIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERL 643


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/607 (36%), Positives = 345/607 (56%), Gaps = 31/607 (5%)

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           D F+   +L        L    ++HG   + G  S+  V    +  Y  CG +  +  +F
Sbjct: 306 DEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVF 365

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           D M  + +  W+ ++ GY QN    + L+L+ +M  S ++PD   +  +L ACSR  +L 
Sbjct: 366 DLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLH 425

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
           YGE +H F + N +A+D  +  +L+++Y  CG    A+ LFD +  ++LV    M++GYS
Sbjct: 426 YGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYS 485

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
                                          +N  P EA+ LF +M   G++P ++ ++ 
Sbjct: 486 -------------------------------QNGLPDEAINLFRQMLSDGIQPYEIAIMC 514

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           V  AC+ L  L   + +H +  K     D+ V+++IIDMYAK G +  ++ +F+R+R ++
Sbjct: 515 VCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKD 574

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V SW  +I  + IHG  + AL  F KM    + P+  TF G+L ACSHAGLV++G E F 
Sbjct: 575 VASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFN 634

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
            M N +NI PK EHY C+VD+ GRA  + +AL L+E MP  P+  IW SL+++CR+HG +
Sbjct: 635 QMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNL 694

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
            L E  A +LL+L+P+     VL+SN++A   +W DV  +R  MK+ G+ K+  CS IE+
Sbjct: 695 GLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEV 754

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
             +V+ FL  D    + +++ E    +  ++   GY PD  S L DLE+E+K  ++  HS
Sbjct: 755 GGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHS 814

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ +GL+++ K   +R+ KNLR+C DCHN  K +SKV  R+IV+RD  RFHH++DG+
Sbjct: 815 EKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGI 874

Query: 716 CSCKDYW 722
           CSC DYW
Sbjct: 875 CSCGDYW 881



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 221/456 (48%), Gaps = 37/456 (8%)

Query: 28  MKQTHAQILKLSHSHHSQNSLLL-KLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSN 86
           ++++  Q LK  H +  ++ L   +L+  +F    T   +L  +  +F  +        N
Sbjct: 318 LERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWN 377

Query: 87  KFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKL 146
             +   + +  P+ AL ++L+M + GL  D F+   +L A +R + L  G ++HG   + 
Sbjct: 378 ALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRN 437

Query: 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLF 206
           G   DPF+   L+ +Y  CGK   A+++FD M +R +V W+VMI GY QNGL DE +NLF
Sbjct: 438 GLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLF 497

Query: 207 EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
            +M    ++P E+ +  +  ACS+   L  G+ +H F +  ++  D  + S++I MYA  
Sbjct: 498 RQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKG 557

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
           GC+ +++ +FD++  K++     +++GY   G+                           
Sbjct: 558 GCIGLSQRIFDRLREKDVASWNVIIAGYGIHGR--------------------------- 590

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL-DQAQRIHLYIDKNAFGGDL 385
                +EAL+LF +M   G+KPD  T   ++ AC+H G++ D  +  +  ++ +     L
Sbjct: 591 ----GKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKL 646

Query: 386 RVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
                ++DM  + G ++ A  + E M    +   W+S++++  IHG+        NK+ +
Sbjct: 647 EHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLE 706

Query: 445 -ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            E   P     I  L+A S  G  D+ R +   M +
Sbjct: 707 LEPEKPENYVLISNLFAGS--GKWDDVRRVRGRMKD 740



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 183/376 (48%), Gaps = 38/376 (10%)

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           D F+ P ++KA A    L  G  +HG+ TK+   SD FV   L+ MYG CG + +A  +F
Sbjct: 100 DNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVF 159

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS--NVEPDEMVLSKILSACSRAGN 233
           + M  R++V W+ +I G+ +NG   E  N F EM +   +  PD   L  +L  C+   +
Sbjct: 160 EHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEED 219

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL-KNLVVSTAMVS 292
           +  G AVH                                GL  K+ L + L+V+ +++ 
Sbjct: 220 IEKGMAVH--------------------------------GLAVKLGLNEELMVNNSLID 247

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV--CGMKPDK 350
            YS+   + +A+L+FD+  +K+++ W++MI GYA          L  +MQ     MK D+
Sbjct: 248 MYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADE 307

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
            T+L+V+  C     L   + +H Y  ++    +  V NA I  Y +CG+L S+  VF+ 
Sbjct: 308 FTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDL 367

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M  + V SW +++  +A + D R AL  + +M D  +DP+  T   +L ACS    +  G
Sbjct: 368 MDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYG 427

Query: 471 REIFA-SMTNEYNIPP 485
            EI   ++ N   + P
Sbjct: 428 EEIHGFALRNGLAVDP 443



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 167/345 (48%), Gaps = 37/345 (10%)

Query: 123 ILKAIARAEGLLEGMQVHGL-GTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
           +L+A  + + +  G ++H +      F +D  + T ++ MY  CG   D+R++FDK+  +
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           ++  W+ ++  Y +N LF++ +++F E+  ++  +PD   L  ++ AC+   +L  G+ +
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 123

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H      ++  D  + + LI MY  CG ++ A  +F+ +  +NLV   +++ G+S     
Sbjct: 124 HGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFS----- 178

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC--GMKPDKVTMLSVIS 358
                                     EN   QE+   F EM V      PD  T+++V+ 
Sbjct: 179 --------------------------ENGFLQESFNAFREMLVGEESFVPDVATLVTVLP 212

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
            CA    +++   +H    K     +L VNN++IDMY+KC  L  A+ +F++  ++N++S
Sbjct: 213 VCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVS 272

Query: 419 WTSMINAFAIHGDARNALIFFNKMK--DESIDPNGVTFIGVLYAC 461
           W SMI  +A   D         KM+  D  +  +  T + VL  C
Sbjct: 273 WNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVC 317


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/625 (36%), Positives = 357/625 (57%), Gaps = 33/625 (5%)

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           P  AL+VF + L      D  +F   L A AR   L  G  V       G+  D FV + 
Sbjct: 90  PASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSS 148

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+ +Y   G + DA  +FD+M  RD V WS M+ G+   G   + + ++  M+   V+ D
Sbjct: 149 LLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGD 208

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           E+V+  ++ AC+ A N+  G +VH  ++ + + +D                         
Sbjct: 209 EVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMD------------------------- 243

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                 +V +T++V  Y++ G ++ A  +F  MV ++ + WSAMISG+A+N    EAL+L
Sbjct: 244 ------VVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRL 297

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F  MQ  G++PD   ++S + AC+++G L   + +H +I +  F  +  +  A IDMY+K
Sbjct: 298 FRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSK 356

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CGSL SA+ +F  +  R++I W +MI     HG  ++AL  F +M +  + P+  TF  +
Sbjct: 357 CGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASL 416

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L A SH+GLV+EG+  F  M N + I P  +HY C+VDL  R+ L+ EA +L+ +M   P
Sbjct: 417 LSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEP 476

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
            V IW +L++ C  + ++EL E  A  +L+L PD  G L L+SN+YA  K+W  V ++RK
Sbjct: 477 TVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRK 536

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            MK+ G  K   CS IE+    + FL  D+SH Q ++I  K+ ++  E++  GY+P    
Sbjct: 537 LMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEF 596

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
              DLE+E K + + +HSEKLA+ +GL+++   + + I+KNLRVC DCH+ IK +SK+  
Sbjct: 597 VYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIAD 656

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           REIV+RD  RFHH+KDGVCSC+DYW
Sbjct: 657 REIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 193/433 (44%), Gaps = 54/433 (12%)

Query: 3   TLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT 62
            L    +P +   + A+S+C+ L  ++   +   +   + +  +  +   LL  ++    
Sbjct: 99  ALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYA---- 154

Query: 63  TPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
              ++  A+ +F ++P       +  +     + +P  A++++ +M  +G+  D      
Sbjct: 155 RWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIG 214

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +++A   A  +  G  VHG   + G   D    T LV MY   G +  A  +F  M +R+
Sbjct: 215 VIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRN 274

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
            V WS MI G+ QNG  DE L LF  M+ S ++PD   L   L ACS  G L  G +VH 
Sbjct: 275 DVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHG 334

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           FI+      +  L +  I MY+ CG +  A+ LF+ +  ++L++  AM++          
Sbjct: 335 FIV-RRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIA---------- 383

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
                         C  A   G       Q+AL LF EM   GM+PD  T  S++SA +H
Sbjct: 384 --------------CCGAHGRG-------QDALTLFQEMNETGMRPDHATFASLLSALSH 422

Query: 363 LGVLDQAQRIHLYIDKNAFG---GDLRVNNA------IIDMYAKCGSLESAREVFERMRR 413
            G++++         K  FG      ++  A      ++D+ A+ G +E A ++   M+ 
Sbjct: 423 SGLVEEG--------KLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKA 474

Query: 414 RNVIS-WTSMINA 425
              ++ W ++++ 
Sbjct: 475 EPTVAIWVALLSG 487



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 6/235 (2%)

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           ++    P  AL++F  +     +PD  T    +SACA LG L   + +        +  D
Sbjct: 84  HSRRGSPASALRVFRALPPAA-RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
           + V ++++ +YA+ G++  A +VF+RM RR+ ++W++M+  F   G   +A+  + +M++
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
           + +  + V  IGV+ AC+ A  V  G  +   +   + +         +VD++ +  LL 
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLL-RHGMRMDVVTATSLVDMYAKNGLLD 261

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALV 557
            A  +   M    N V W ++++    +G+ +  L  F   Q   + PD  GALV
Sbjct: 262 VACRVFGLM-VHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPD-SGALV 314


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/603 (36%), Positives = 339/603 (56%), Gaps = 32/603 (5%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +  I+ A A+++ L     +H   ++     D F+   L+ MY  CG + DAR +FD + 
Sbjct: 65  YHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIP 124

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            RD+V W+ +I GY QN +  E L L  +M  +   P     +  L A    G    GE 
Sbjct: 125 TRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQ 184

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H   +  N+  D ++ S L+ MYA                               R  Q
Sbjct: 185 MHALAVKYNLDEDVYVGSALLDMYA-------------------------------RCQQ 213

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           ++ A  +FD +  K+ + W+A+I+G+A     +  L  F EMQ  G      T  SV SA
Sbjct: 214 MDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSA 273

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
            A +G L+Q + +H ++ K+       V N I+ MYAK GS+  AR+VF+R+ +R++++W
Sbjct: 274 LARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTW 333

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            +M+ AFA +G  + A+  F +++   I  N +TF+ VL ACSH GLV EG++ F  M  
Sbjct: 334 NTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYF-DMMK 392

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
           +YN+ P+ +HY   VDL GRA LL+EAL  V  MP  P   +WG+L+ ACR+H   ++ +
Sbjct: 393 DYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQ 452

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
           +AA  + +LDP+  G  VLL NIYA   +W D   +RK MK  G+ KE ACS +E+ N V
Sbjct: 453 YAADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSV 512

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
           + F+  D +H ++++IY    EV + +K AGYVP+    L+ ++++E+   + +HSEK+A
Sbjct: 513 HMFVADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIA 572

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           L + LI+    + IRI+KN+R+C DCH+  + VS+V+ REIV+RD  RFHH+ +G CSC 
Sbjct: 573 LAFALINMPAGATIRIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCG 632

Query: 720 DYW 722
           DYW
Sbjct: 633 DYW 635



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 146/329 (44%), Gaps = 51/329 (15%)

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           + P   V   I++AC+++ NL+   A+H  +  + +A D  L ++LI MY  CG      
Sbjct: 58  LAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGA----- 112

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
                                     V DAR +FD +  +D++ W+ +I+GYA+N+ P E
Sbjct: 113 --------------------------VSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAE 146

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
           AL L  +M     +P   T  S + A    G     +++H    K     D+ V +A++D
Sbjct: 147 ALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLD 206

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
           MYA+C  ++ A  VF+ +  +N +SW ++I  FA  GD    L+ F +M+         T
Sbjct: 207 MYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFT 266

Query: 454 FIGVLYACSHAGLVDEGREIFASMTNE---------YNIPPKYEHYGCMVDLFGRANLLR 504
           +  V  A +  G +++GR + A M              I   Y   G MVD        R
Sbjct: 267 YSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVD-------AR 319

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHG 533
           +  + V+      ++V W +++ A   +G
Sbjct: 320 KVFDRVDQR----DLVTWNTMLTAFAQYG 344



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 181/416 (43%), Gaps = 36/416 (8%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           I++C+   ++    A    LS S  + +  LL  L+  +        ++  A  +F  IP
Sbjct: 69  ITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMY----CKCGAVSDARHVFDGIP 124

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
                     I   + +  P  AL +   ML        F+F   LKA     G   G Q
Sbjct: 125 TRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQ 184

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H L  K     D +V + L+ MY  C ++  A  +FD +  ++ V W+ +I G+ + G 
Sbjct: 185 MHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGD 244

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
            +  L  F EM+ +         S + SA +R G L  G  VH  +I +   L A + +T
Sbjct: 245 GETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANT 304

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           ++ MYA  G M  A+ +FD+V  ++LV                                W
Sbjct: 305 ILGMYAKSGSMVDARKVFDRVDQRDLVT-------------------------------W 333

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           + M++ +A+    +EA+  F E++  G++ +++T LSV++AC+H G++ + ++    +  
Sbjct: 334 NTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKD 393

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAR-EVFERMRRRNVISWTSMINAFAIHGDAR 433
                ++    + +D+  + G L+ A   VF+         W +++ A  +H +A+
Sbjct: 394 YNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAK 449



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 99/201 (49%), Gaps = 4/201 (1%)

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
           + P      S+I+ACA    L  A+ IH ++ ++   GD  + N++I MY KCG++  AR
Sbjct: 58  LAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDAR 117

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
            VF+ +  R+V+SWT +I  +A +     AL     M      P+G TF   L A    G
Sbjct: 118 HVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACG 177

Query: 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
               G ++ A +  +YN+         ++D++ R   +  A+ + + +  + N V W +L
Sbjct: 178 GRGIGEQMHA-LAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLD-SKNEVSWNAL 235

Query: 526 MA--ACRVHGEIELAEFAAKQ 544
           +A  A +  GE  L +FA  Q
Sbjct: 236 IAGFARKGDGETTLMKFAEMQ 256


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/549 (39%), Positives = 322/549 (58%), Gaps = 39/549 (7%)

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +F  +   ++  W+ M  GY ++      L  + +M +S +EPD      +L A S++ N
Sbjct: 86  VFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAISKSLN 145

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           +  GEA+H   I N       +Q++L+ +YA CG                          
Sbjct: 146 VREGEAIHSVTIRNGFESLVFVQNSLLHIYAACG-------------------------- 179

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
                  E A  +F+ M ++DL+   ++I+G+A N  P EAL LF EM   G++PD  T+
Sbjct: 180 -----DTESAHNVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTV 234

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
           +S++SA A LG L+  +R+H+Y+ K     +  V N+++D+YAKC ++            
Sbjct: 235 VSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEXE-------- 286

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           RN +SWTS+I   A++G    AL  F +M+ + + P+ +TF+GVLYACSH G++DEG + 
Sbjct: 287 RNAVSWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDY 346

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           F  M  E+ I P+ EHYGCMVDL  RA L+++A E ++ MP  PN V W +L+ AC +HG
Sbjct: 347 FRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHG 406

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
            + L E A   LL+L+P H G  VLLSN+Y  + RW DV  +R+SM + G+ K    S +
Sbjct: 407 HLGLGETARSHLLKLEPKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLV 466

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW 653
           E+ N VYEF   +RSH Q+  +Y  L ++   LK  GYVP   + L D+E+EEK + + +
Sbjct: 467 ELGNRVYEFTMGNRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSY 526

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HSEK A+ +  +++   + IR++KNLRVC DCH  IKL++KVY REIVIRDR RFHH++ 
Sbjct: 527 HSEKXAIAFMRLNTAPGTTIRVMKNLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRG 586

Query: 714 GVCSCKDYW 722
           G CSCKDYW
Sbjct: 587 GSCSCKDYW 595



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 209/438 (47%), Gaps = 55/438 (12%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTH-MKQTHAQILKLSHSHHSQNSLLLKLLL---TSFSLP 60
           + P  PLT      +  C+S  H ++  HA    + H     N  + K L+    S S P
Sbjct: 12  TTPEYPLT-KCIYLLQFCASSKHKLRXIHA--FSIRHGVLLNNPDMGKHLIFTIVSLSAP 68

Query: 61  TTTPSSLY-----YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI 115
            +   +++     YA ++F+ I  P     N   R  + S  P  AL+ + +M+   +  
Sbjct: 69  MSYAYNVFTWVLSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEP 128

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           D  ++P +LKAI+++  + EG  +H +  + GF S  FVQ  L+ +Y ACG    A  +F
Sbjct: 129 DTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVF 188

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           + M  RD+V    +I+G+  NG   E L LF EM    VEPD   +  +LSA +  G L 
Sbjct: 189 ELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALE 248

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G  VH +++   +  ++H+ ++L+ +YA C  +   +        +N V  T+++ G +
Sbjct: 249 LGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEXE--------RNAVSWTSLIVGLA 300

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
                                     ++G+ E     EAL+LF EM+  G+ P ++T + 
Sbjct: 301 --------------------------VNGFGE-----EALELFREMEGQGLVPSEITFVG 329

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR- 412
           V+ AC+H G+LD+       + K  FG   R+ +   ++D+ ++ G ++ A E  + M  
Sbjct: 330 VLYACSHCGMLDEGFDYFRRM-KEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPV 388

Query: 413 RRNVISWTSMINAFAIHG 430
           + N ++W +++ A  IHG
Sbjct: 389 QPNAVTWRTLLGACTIHG 406


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/604 (37%), Positives = 356/604 (58%), Gaps = 35/604 (5%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           I+  + R++ + + + +H    + G   DPF+   L+     C  I  A  +F      +
Sbjct: 35  IISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPN 94

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +  ++ +IDG+  +G + + + L+  M   ++ PD  +++ IL AC     L  G  VH 
Sbjct: 95  VYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVH- 153

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
                + AL   L S                         N +V   ++  Y + G++ D
Sbjct: 154 -----SRALKLGLSS-------------------------NRLVRLRIMELYGKCGELGD 183

Query: 303 ARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
           AR +F++M    V KD +CW+AMI G+  N     AL+ F  MQ   ++P++ T++ V+S
Sbjct: 184 ARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLS 243

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           AC+ LG L+  + +H Y+ K     +L V NA+I+MY++CGS++ A+ VF+ M+ R+VI+
Sbjct: 244 ACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVIT 303

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           + +MI+  +++G +R A+  F  M    + P  VTF+GVL ACSH GLVD G +IF SMT
Sbjct: 304 YNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMT 363

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
            +Y + P+ EHYGCMVDL GR   L EA +L+ TM   P+ ++ G+L++AC++H  +EL 
Sbjct: 364 RDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELG 423

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
           E  AK L        G  VLLS++YA   +W++  ++R  MKE G+ KE  CS IE+NNE
Sbjct: 424 EQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNE 483

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           ++EFL  D  H + ++IYEKL E+   L+  GY P+    L D+ED EK   +  HSE+L
Sbjct: 484 IHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERL 543

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+CYGLIS++  + IR++KNLRVC DCH+ IKL++K+  R++V+RDR RFH++++G CSC
Sbjct: 544 AICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSC 603

Query: 719 KDYW 722
            DYW
Sbjct: 604 GDYW 607



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/483 (25%), Positives = 229/483 (47%), Gaps = 50/483 (10%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMKQT---HAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           S P    +L     IS      H+ Q    HAQ+++   + HSQ+  ++  LL S S   
Sbjct: 22  SNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIR---NGHSQDPFMVFELLRSCS--- 75

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
               ++ YA  IF     P   +    I     S     A++++ +ML++ +  D +   
Sbjct: 76  -KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMA 134

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS-- 179
            ILKA      L EG +VH    KLG  S+  V+  ++ +YG CG++ DAR +F++M   
Sbjct: 135 SILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPED 194

Query: 180 --YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
              +D V W+ MIDG+ +N   +  L  F  M+  NV P+E  +  +LSACS+ G L  G
Sbjct: 195 VVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG 254

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
             VH ++    + L+  + + LI MY+ CG +D A+ +FD++  ++++    M+SG S  
Sbjct: 255 RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMN 314

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           G+                                ++A++LF  M    ++P  VT + V+
Sbjct: 315 GK-------------------------------SRQAIELFRVMIGRRLRPTNVTFVGVL 343

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMRRR- 414
           +AC+H G++D   +I   + ++ +G + ++ +   ++D+  + G LE A ++   M+   
Sbjct: 344 NACSHGGLVDFGFKIFHSMTRD-YGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTP 402

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           + I   ++++A  +H +          ++D     +G T++ + +  + +G   E  ++ 
Sbjct: 403 DHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSG-TYVLLSHVYASSGKWKEAAQVR 461

Query: 475 ASM 477
           A M
Sbjct: 462 AKM 464



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 147/355 (41%), Gaps = 22/355 (6%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P   L      A  S  +L   ++ H++ LKL  S    ++ L++L +            
Sbjct: 128 PDNYLMASILKACGSQLALREGREVHSRALKLGLS----SNRLVRLRIMEL---YGKCGE 180

Query: 67  LYYALSIFSQIP----APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
           L  A  +F ++P    A  +      I     +     AL+ F  M  E +  + F+   
Sbjct: 181 LGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVC 240

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +L A ++   L  G  VH    K     + FV   L+ MY  CG I +A+ +FD+M  RD
Sbjct: 241 VLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRD 300

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV-H 241
           ++ ++ MI G   NG   + + LF  M    + P  +    +L+ACS  G + +G  + H
Sbjct: 301 VITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFH 360

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF-------DKVLLKNLVVSTAMVSGY 294
               D  V         ++ +    G ++ A  L        D ++L  L+ +  M    
Sbjct: 361 SMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNL 420

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
               QV  A+++ D+  + D   +  +   YA +   +EA ++  +M+  GM+ +
Sbjct: 421 ELGEQV--AKVLEDRG-QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKE 472


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 244/712 (34%), Positives = 382/712 (53%), Gaps = 44/712 (6%)

Query: 15  TSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYAL 71
           T   +  C+ L  +   ++ HA +LK     + Q + LL +         T    +  AL
Sbjct: 269 TVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMY--------TKCGRVDSAL 320

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
            +F +I        N  +     +     A++   +ML  G   D      +  A+    
Sbjct: 321 RVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLG 380

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
            LL G +VH    K    SD  V   L+ MY  C  I  +  +FD+M  +D + W+ +I 
Sbjct: 381 WLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIIT 440

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
            Y Q+    E L +F E +   ++ D M++  IL ACS    +   + +H + I N    
Sbjct: 441 CYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRN---- 496

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
                                 GL D      LVV   ++  Y   G+V  +  +F+ + 
Sbjct: 497 ----------------------GLLD------LVVKNRIIDIYGECGEVYHSLKMFETVE 528

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           +KD++ W++MI+ YA +    EAL LF EMQ   ++PD V ++S++ A   L  L + + 
Sbjct: 529 QKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKE 588

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           +H ++ +  F  +  + ++++DMY+ CGSL  A +VF  ++ ++++ WT+MINA  +HG 
Sbjct: 589 VHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGH 648

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
            + A+  F +M    + P+ V+F+ +LYACSH+ LV+EG+     M + Y + P  EHY 
Sbjct: 649 GKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYA 708

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           C+VDL GR+    EA E +++MP  P  V+W SL+ ACRVH   ELA  AA +LL+L+PD
Sbjct: 709 CVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPD 768

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
           + G  VL+SN++A+  +W +  E+R  + ERG+ K+ ACS IE+ N V+ F T D SH+ 
Sbjct: 769 NPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRD 828

Query: 612 TDQIYEKLNEVISEL-KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD 670
            ++I  KL E+   L K  GY  D  S L D+ +EEK +V+  HSE+LA+ +GLI+++  
Sbjct: 829 AERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFGLINTRPG 888

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             +RI KNLRVC DCH F KLVSK++ R+IV+RD  RFHH+  G CSC D+W
Sbjct: 889 MPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 126/504 (25%), Positives = 232/504 (46%), Gaps = 48/504 (9%)

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
           P + Y   S      +PP   S   ++ +      + AL++ L     G +  +  +  +
Sbjct: 9   PPNPYKKFSTTPPSISPPDPTS---LKQLCKEGNLRQALRL-LTSQTPGRSPPQEHYGWV 64

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGF--GSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
           L  +A  + + +G+QVH      G   G D F+ T L+ MYG CG++ DARL+FD MS R
Sbjct: 65  LDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSR 124

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKM---SNVEPDEMVLSKILSACSRAGNLSYGE 238
            +  W+ +I  Y  +G   E L ++  M++   S V PD   L+ +L A    G+   G 
Sbjct: 125 TVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGC 184

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
            VH   + + +     + + LI MYA CG +D A  +F+                     
Sbjct: 185 EVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFE--------------------- 223

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
                 L+ D    +D+  W++MISG  +N    +AL LF  MQ   +  +  T + V+ 
Sbjct: 224 ------LMHDG---RDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQ 274

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVN-NAIIDMYAKCGSLESAREVFERMRRRNVI 417
            C  L  L+  + +H  + K+  G ++ +  NA++ MY KCG ++SA  VF  +  ++ I
Sbjct: 275 VCTELAQLNLGRELHAALLKS--GSEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYI 332

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
           SW SM++ +  +G    A+ F ++M      P+    + +  A  H G +  G+E+ A  
Sbjct: 333 SWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYA 392

Query: 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLM---AACRVHGE 534
             +  +    +    ++D++ +   +  +  + + M    ++  W +++   A    H E
Sbjct: 393 IKQ-RLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHIS-WTTIITCYAQSSRHIE 450

Query: 535 -IELAEFAAKQLLQLDPDHDGALV 557
            +E+   A K+ +++DP   G+++
Sbjct: 451 ALEIFREAQKEGIKVDPMMIGSIL 474


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/733 (32%), Positives = 387/733 (52%), Gaps = 79/733 (10%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L  A  +F +IPAP +R  N  IRA SW      A+ ++  ML   +  ++++FP +LKA
Sbjct: 49  LALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKA 108

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            +    L  G  +H     +G  +D FV T L+ +Y  C +   A  +F KM  RD+V W
Sbjct: 109 CSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAW 168

Query: 187 SVMIDGYFQNGLFDEVL-NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           + M+ GY  +G++   + +L +      + P+   L  +L   ++ G L  G +VH + +
Sbjct: 169 NAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCL 228

Query: 246 DNNVALDAH-----LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
                LD +     + + L+ MYA C  +  A  +F  + ++N V  +A++ G+    ++
Sbjct: 229 --RAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRM 286

Query: 301 EDARLIFDQM----------------------------------------VEKDLICWSA 320
            +A  +F  M                                        +  DL   ++
Sbjct: 287 TEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNS 346

Query: 321 MISGYAENNHPQEALKLFNE-------------------------------MQVCGMKPD 349
           ++S YA+     EA  LF+E                               MQ C ++PD
Sbjct: 347 LLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPD 406

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
             TM+S+I AC+HL  L   +  H  +       +  + N++IDMYAKCG ++ +R+VF+
Sbjct: 407 IATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFD 466

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
           +M  R+++SW +MI  + IHG  + A   F  MK++  +P+ VTFI ++ ACSH+GLV E
Sbjct: 467 KMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTE 526

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G+  F +MT++Y I P+ EHY CMVDL  R   L EA + +++MP   +V +WG+L+ AC
Sbjct: 527 GKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGAC 586

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
           R+H  I+L +  ++ + +L P+  G  VLLSNI++   R+ +  E+R   K +G  K   
Sbjct: 587 RIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPG 646

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
           CS IE+N  ++ F+  D+SH  +  IY +L+ ++ ++K  GY  D    L DLE+EEK +
Sbjct: 647 CSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILIDIKKLGYQADTSFVLQDLEEEEKEK 706

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
            +L+HSEKLA+ +G++S  +D  I + KNLRVC DCH  IK ++ V  R I++RD  RFH
Sbjct: 707 ALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFH 766

Query: 710 HYKDGVCSCKDYW 722
           H+K+G CSC D+W
Sbjct: 767 HFKNGQCSCGDFW 779



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 119/569 (20%), Positives = 229/569 (40%), Gaps = 110/569 (19%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           G++  AR +FD++   D   ++ +I  Y   G F   ++L+  M    V P++     +L
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
            ACS   +L  G  +H       +  D  + + LI +Y  C     A  +F K+ ++++V
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166

Query: 286 VSTAMVSGYSRAGQVEDA------------------------------------------ 303
              AM++GY+  G    A                                          
Sbjct: 167 AWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAY 226

Query: 304 --RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV---------------CGM 346
             R   DQ  E+ LI  +A++  YA+  H   A ++F+ M V               C  
Sbjct: 227 CLRAYLDQNEEQVLI-GTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDR 285

Query: 347 KPDKVTML-----------------SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389
             +   +                  S +  CA L  L    ++H  + K+    DL   N
Sbjct: 286 MTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGN 345

Query: 390 AIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449
           +++ MYAK G +  A  +F+ +  ++ IS+ ++++ +  +G A  A + F KM+  ++ P
Sbjct: 346 SLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQP 405

Query: 450 NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
           +  T + ++ ACSH   +  GR    S+     +  +      ++D++ +   +  + ++
Sbjct: 406 DIATMVSLIPACSHLAALQHGRCSHGSVIIR-GLALETSICNSLIDMYAKCGRIDLSRQV 464

Query: 510 VETMPFAPNVVIWGSLMAACRVHGEIELAE--FAAKQLLQLDPDHDGALVLL-----SNI 562
            + MP A ++V W +++A   +HG  + A   F + +    +PD    + L+     S +
Sbjct: 465 FDKMP-ARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGL 523

Query: 563 YAKDKRWQDVGELRKSMKERGILKERAC-----SRIEMNNEVYEF--------------- 602
             + K W D    +  +  R  ++   C     +R    +E Y+F               
Sbjct: 524 VTEGKHWFDTMTHKYGILPR--MEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGA 581

Query: 603 -LTADRSHKQTDQIYEKLNEVISELKPAG 630
            L A R HK  D + ++++ +I +L P G
Sbjct: 582 LLGACRIHKNID-LGKQVSRMIQKLGPEG 609


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/596 (37%), Positives = 350/596 (58%), Gaps = 5/596 (0%)

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD---ARLMFDKMSYRDIVPWSV 188
           G+ +  Q H     LG  +D  + + L+         L    A  +++ +S+  +   + 
Sbjct: 43  GITQIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNN 102

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVE-PDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
           MI  + +  L    ++L+  M  S V  P++  L+ +L ACS A  +  G  V   +I  
Sbjct: 103 MIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKL 162

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS-TAMVSGYSRAGQVEDARLI 306
               D  +++ LI +Y  C  ++ AK +FD+V     VVS  +M+ G+ R GQ+  A+ +
Sbjct: 163 GFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKL 222

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F +M EKD+I W  +ISG  +N   ++AL  F E+    ++P++  ++S+++A A LG L
Sbjct: 223 FVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTL 282

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           +  +RIH   +   F     +  A++DMYAKCG ++ +R +F+RM  ++  SW  MI   
Sbjct: 283 EYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGL 342

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           A HG  + AL  F K   +   P  VTFIGVL ACS AGLV EG+  F  MT+ Y I P+
Sbjct: 343 ATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPE 402

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            EHYGCMVDL  RA  + +A+E++  MP  P+ V+W S++ +C+VHG IEL E    +L+
Sbjct: 403 MEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLI 462

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           Q+DP H+G  V L+ I+A+ ++W+DV ++R+ M ER   K    S IE    V+ F+  D
Sbjct: 463 QMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGD 522

Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS 666
           + H++T +IY+ L  +   +  AGY  ++ S L D+E+EEK   I  HSE+LA+ +GL+ 
Sbjct: 523 KEHERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKENAIKEHSERLAIAFGLLV 582

Query: 667 SKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +K   CIRI+KNLRVC DCH   K++S V+ REI++RD +RFHH+K G+CSC+DYW
Sbjct: 583 TKDGDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 205/443 (46%), Gaps = 74/443 (16%)

Query: 25  LTHMKQTHAQILKLSHSHHSQ--NSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPS 82
           +T +KQ HA+IL L  ++  +  + LL  L ++S SLP+       YALSI++ I  P  
Sbjct: 44  ITQIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSD------YALSIYNSISHPTV 97

Query: 83  RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIARAEGLLEGMQVHG 141
             +N  IR       P+H++ ++  M    +   ++ +   +L+A + A  + EG QV  
Sbjct: 98  FATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQT 157

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM-SYRDIVPWSVMIDGY------- 193
              KLGF  D FV+  L+ +Y  C ++  A+ +FD++ S RD+V W+ MI G+       
Sbjct: 158 HVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQIS 217

Query: 194 ------------------------FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229
                                    QNG  ++ L+ F+E+    + P+E +L  +L+A +
Sbjct: 218 VAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAA 277

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
           + G L YG+ +H         + A L + L+ MYA CGC+D ++ LFD+           
Sbjct: 278 QLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDR----------- 326

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
                               M EKD   W+ MI G A +   QEAL LF +    G  P 
Sbjct: 327 --------------------MPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPV 366

Query: 350 KVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
            VT + V++AC+  G++ + +    L  D      ++     ++D+ ++ G +  A E+ 
Sbjct: 367 NVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMI 426

Query: 409 ERM-RRRNVISWTSMINAFAIHG 430
            RM    + + W S++ +  +HG
Sbjct: 427 NRMPAPPDPVLWASVLGSCQVHG 449


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/683 (34%), Positives = 375/683 (54%), Gaps = 65/683 (9%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAE 131
           +F  +P       N  +   + +     +++V+  ML +G + ++R +F  +L  ++   
Sbjct: 93  VFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTML-ILSSNR 151

Query: 132 GLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGA-------------------------- 164
           G ++ G Q+HG   K G+ S  FV + LV MY                            
Sbjct: 152 GFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMI 211

Query: 165 -----CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
                C  I++A  +FD M  +D + W+ +I G  QNGLF E ++ F+EM +     D+ 
Sbjct: 212 TGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQF 271

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
               +L+AC     L  G+ +H +II  +   +  + S L+ MY  C C +         
Sbjct: 272 TFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMY--CKCRN--------- 320

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
                               V+ A  +F +M  K++I W+AM+ GY +N + +EA+++F 
Sbjct: 321 --------------------VKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFC 360

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           +MQ   + PD  T+ SVIS+CA+L  L++  + H     +     + V+NA+I +Y KCG
Sbjct: 361 DMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCG 420

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           SLE A ++F  M+ R+ +SWT++++ +A  G A   +  F  M    I P+GVTF+GVL 
Sbjct: 421 SLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLS 480

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           ACS AGLV++G   F  M  E+ I P  +HY CM+DL  RA  L EA   +  MPF+P+ 
Sbjct: 481 ACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDA 540

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
           + W +L+++CR++G +E+ ++AA+ L +L+P +  + +LLS+IYA   +W DV +LRK M
Sbjct: 541 IGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGM 600

Query: 580 KERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
           +E G+ KE   S I+  N+V+ F   DRS   +DQIY KL  +  ++   GYVPD+   L
Sbjct: 601 REMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVL 660

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
            D+E  EK +++  HSEKLA+ +GL+       IR+VKNLRVC DCHN  K +S++  RE
Sbjct: 661 HDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQRE 720

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           I++RD  RFH +KDGVCSC D+W
Sbjct: 721 ILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 207/421 (49%), Gaps = 40/421 (9%)

Query: 153 FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM-KM 211
           F    L+  Y   G + D + +FD M   D+V W+ ++ GY  NGL  E + ++  M K 
Sbjct: 72  FSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKD 131

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
            +V  + +  S +L   S  G +  G  +H  I          + S L+ MYA  G ++ 
Sbjct: 132 GSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFIND 191

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
           A  +F+++  KN+VV   M++G  R   + +A  +FD M EKD I W+ +I+G  +N   
Sbjct: 192 ANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLF 251

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           +EA+  F EM + G   D+ T  SV++AC     LD+ ++IH YI +  +  ++ V +A+
Sbjct: 252 KEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSAL 311

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           +DMY KC +++ A  VF +MR +NVISWT+M+  +  +G +  A+  F  M+   I P+ 
Sbjct: 312 LDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDD 371

Query: 452 VTFIGVLYACSHAGLVDEGREI-----------FASMTNE----YNIPPKYEH------- 489
            T   V+ +C++   ++EG +            F +++N     Y      EH       
Sbjct: 372 FTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHE 431

Query: 490 --------YGCMVD---LFGRANLLREALELVETM---PFAPNVVIWGSLMAACRVHGEI 535
                   +  +V     FG+AN   E + L ETM      P+ V +  +++AC   G +
Sbjct: 432 MKIRDEVSWTALVSGYAQFGKAN---ETISLFETMLAHGIVPDGVTFVGVLSACSRAGLV 488

Query: 536 E 536
           E
Sbjct: 489 E 489



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 173/364 (47%), Gaps = 33/364 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F  +P   S      I  ++ +   K A+  F +M  EG  +D+F+F  +L A   
Sbjct: 223 AEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGG 282

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L EG Q+H    +  +  + FV + L+ MY  C  +  A  +F KM +++++ W+ M
Sbjct: 283 FLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAM 342

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           + GY QNG  +E + +F +M+ + + PD+  L  ++S+C+   +L  G   H   + + +
Sbjct: 343 LVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGL 402

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                + + LIT+Y  CG ++ A  LF ++ +++ V  TA+VSGY++ G+          
Sbjct: 403 ICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKA--------- 453

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                                  E + LF  M   G+ PD VT + V+SAC+  G++++ 
Sbjct: 454 ----------------------NETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKG 491

Query: 370 -QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFA 427
                  + ++           +ID+ ++ G LE A+    +M    + I W +++++  
Sbjct: 492 YHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCR 551

Query: 428 IHGD 431
           ++G+
Sbjct: 552 LNGN 555



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 166/365 (45%), Gaps = 44/365 (12%)

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L  C  A N +  + +H  II      +  L + LI  Y   G +  A+ +FD +   NL
Sbjct: 12  LKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNL 71

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
                ++S YS+ G ++D + +FD M   D++ W++++SGYA N    E+++++N M   
Sbjct: 72  FSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKD 131

Query: 345 G-MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
           G +  +++T  +++   ++ G +D  ++IH  I K  +   L V + ++DMYAK G +  
Sbjct: 132 GSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFIND 191

Query: 404 AREVFERMRRRNV-------------------------------ISWTSMINAFAIHGDA 432
           A  +FE +  +N+                               ISWT++I     +G  
Sbjct: 192 ANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLF 251

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY-- 490
           + A+  F +M  E    +  TF  VL AC     +DEG++I A     Y I   Y+    
Sbjct: 252 KEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHA-----YIIRTDYQDNIF 306

Query: 491 --GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE--FAAKQLL 546
               ++D++ +   ++ A  +   M    NV+ W +++     +G  E A   F   Q  
Sbjct: 307 VGSALLDMYCKCRNVKYAEAVFRKMRH-KNVISWTAMLVGYGQNGYSEEAVRIFCDMQRN 365

Query: 547 QLDPD 551
           ++ PD
Sbjct: 366 EIHPD 370


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/683 (34%), Positives = 358/683 (52%), Gaps = 64/683 (9%)

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPILKAIARA 130
           S F ++P       N  I   S S     A+K +  M+ +    + R +   +LK  +  
Sbjct: 93  STFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSN 152

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYG--------------------------- 163
             +  G Q+HG   KLGF S   V + L+ MY                            
Sbjct: 153 GHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLM 212

Query: 164 ----ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
               ACG I DA  +F  M  +D V W+ MI G  QNGL  E +  F EMK+  ++ D+ 
Sbjct: 213 GGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQY 271

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
               +L AC   G ++ G+ +H  II  N     ++ S LI MY  C C+  AK      
Sbjct: 272 PFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAK------ 325

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
                                     +FD+M +K+++ W+AM+ GY +    +EA+K+F 
Sbjct: 326 -------------------------TVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFL 360

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           +MQ  G+ PD  T+   ISACA++  L++  + H     +     + V+N+++ +Y KCG
Sbjct: 361 DMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCG 420

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
            ++ +  +F  M  R+ +SWT+M++A+A  G A   +  F+KM    + P+GVT  GV+ 
Sbjct: 421 DIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVIS 480

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           ACS AGLV++G+  F  MT+EY I P   HY CM+DLF R+  L EA+  +  MPF P+ 
Sbjct: 481 ACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDA 540

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
           + W +L++ACR  G +E+ ++AA+ L++LDP H     LLS+IYA   +W  V +LR+ M
Sbjct: 541 IGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGM 600

Query: 580 KERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
           +E+ + KE   S I+   +++ F   D S    DQIY KL E+ +++   GY PD     
Sbjct: 601 REKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVH 660

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
            D+E+  K +++ +HSE+LA+ +GLI       IR+ KNLRVC DCHN  K +S V  RE
Sbjct: 661 HDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGRE 720

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           I++RD  RFH +KDG CSC D+W
Sbjct: 721 ILVRDAVRFHRFKDGTCSCGDFW 743



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/409 (31%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 153 FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS 212
           F    L+  Y   G I +    F+K+  RD V W+V+I+GY  +GL    +  +  M M 
Sbjct: 73  FSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM-MR 131

Query: 213 NVEPD--EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL--QSTLITMYANCGC 268
           +   +   + L  +L   S  G++S G+ +H  +I   +  +++L   S L+ MYAN GC
Sbjct: 132 DFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVI--KLGFESYLLVGSPLLYMYANVGC 189

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           +  AK +F  +  +N V+  +++ G    G +EDA  +F  M EKD + W+AMI G A+N
Sbjct: 190 ISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQN 248

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
              +EA++ F EM+V G+K D+    SV+ AC  LG +++ ++IH  I +  F   + V 
Sbjct: 249 GLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVG 308

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           +A+IDMY KC  L  A+ VF+RM+++NV+SWT+M+  +   G A  A+  F  M+   ID
Sbjct: 309 SALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGID 368

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY----GCMVDLFGRANLLR 504
           P+  T    + AC++   ++EG +          I     HY      +V L+G+   + 
Sbjct: 369 PDHYTLGQAISACANVSSLEEGSQFHGKA-----ITSGLIHYVTVSNSLVTLYGKCGDID 423

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGE-IELAEFAAKQLLQ-LDPD 551
           ++  L   M    + V W ++++A    G  +E  +   K +   L PD
Sbjct: 424 DSTRLFNEMN-VRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPD 471



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 157/353 (44%), Gaps = 41/353 (11%)

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
           Y + +H  II      +  L + ++  YA       A+ +FD++   NL     ++  YS
Sbjct: 24  YVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYS 83

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE-MQVCGMKPDKVTML 354
           +AG + +    F+++ ++D + W+ +I GY+ +     A+K +N  M+       +VT++
Sbjct: 84  KAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLM 143

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           +++   +  G +   ++IH  + K  F   L V + ++ MYA  G +  A++VF  +  R
Sbjct: 144 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDR 203

Query: 415 NV------------------------------ISWTSMINAFAIHGDARNALIFFNKMKD 444
           N                               +SW +MI   A +G A+ A+  F +MK 
Sbjct: 204 NTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKV 263

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
           + +  +   F  VL AC   G ++EG++I A +    N          ++D++ +   L 
Sbjct: 264 QGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT-NFQDHIYVGSALIDMYCKCKCLH 322

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL-----DPDH 552
            A  + + M    NVV W +++     +G+   AE A K  L +     DPDH
Sbjct: 323 YAKTVFDRMK-QKNVVSWTAMVVG---YGQTGRAEEAVKIFLDMQRSGIDPDH 371


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/520 (41%), Positives = 319/520 (61%), Gaps = 31/520 (5%)

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           L +F  M   ++ PD      +L A ++  +   G+ +H  +I      D +  + L+ +
Sbjct: 74  LYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHL 133

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           Y  C C+                              + DA  +FD+M E++ + W+A+I
Sbjct: 134 Y--CTCLS-----------------------------ISDASQLFDEMPERNAVTWNALI 162

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
           +GY  N    +A+  F  M   G +P + T++ V+SAC+HLG  +Q + IH +I  N   
Sbjct: 163 TGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLR 222

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            ++ V  A+IDMYAKCG++    +VFE +R +NV +W  +I+ +A++G    AL  F++M
Sbjct: 223 LNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRM 282

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
             E+  P+ VTF+GVL AC H GLV EGR  F SM  ++ + P+ EHYGCMVDL GRA L
Sbjct: 283 LMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGL 342

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
           L EALEL+++M   P+ +IW +L+ ACRVHG  +L E+  K+L++L+P++    VLLSNI
Sbjct: 343 LEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNI 402

Query: 563 YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
           Y++++RW +VG+LR  M  RGI K   CS IE+NN VYEF+ ++    + + IY++L+ +
Sbjct: 403 YSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNL 462

Query: 623 ISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVC 682
           I +LK  GYV     AL D+E EEK   +++HSEKLAL +GL++S  D  +RIVKNLR+C
Sbjct: 463 IKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRIC 522

Query: 683 EDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            DCH F K++S VY R IV+RDR RFHH+ +G CSC+DYW
Sbjct: 523 LDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 176/365 (48%), Gaps = 36/365 (9%)

Query: 73  IFSQIPAP-PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
           IFS+      S+  N  IR     ++  ++L +F  M    +  D  +FP +LKA A+  
Sbjct: 44  IFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLC 103

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
               G  +HG+  ++GF  D +  T LV +Y  C  I DA  +FD+M  R+ V W+ +I 
Sbjct: 104 DTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALIT 163

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           GY  N  F + ++ F  M     +P E  +  +LSACS  G  + G+ +HEFI  N + L
Sbjct: 164 GYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRL 223

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           +  + + LI MYA CG +   + +F+++  KN+     ++SGY+  GQ  DA        
Sbjct: 224 NVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQ-GDA-------- 274

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
                                 AL+ F+ M +   KPD+VT L V+ AC H G++ +  R
Sbjct: 275 ----------------------ALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEG-R 311

Query: 372 IHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAI 428
                 K  FG   R+ +   ++D+  + G LE A E+ + M    + I W +++ A  +
Sbjct: 312 WQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRV 371

Query: 429 HGDAR 433
           HG+ +
Sbjct: 372 HGNTK 376


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/592 (38%), Positives = 341/592 (57%), Gaps = 38/592 (6%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGAC--GKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           Q H L  +     +P   + L+        G +  AR +F +M   D    + MI GY +
Sbjct: 29  QAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYAR 88

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           +    E ++L+  M    V  D      +L+AC+R G +  G   H  ++ N    D  +
Sbjct: 89  SQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFV 148

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            + LI  Y NCG    A                                 +FD+   +D+
Sbjct: 149 INALIQFYHNCGSFGCACD-------------------------------VFDESTVRDV 177

Query: 316 ICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           + W+ MI+ +      ++A  L +EM ++  ++PD+VTM+S++ ACA LG L++ + +H 
Sbjct: 178 VTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHS 237

Query: 375 Y---IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           Y   +DK     DL +  A++DMYAKCGS++ A +VF RMR RNV +W ++I   A+HG 
Sbjct: 238 YSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGH 297

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
             +A+  F++M+ + + P+ VTFI +L ACSHAGLVDEG  +F +M N++ I P+ EHYG
Sbjct: 298 GEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYG 357

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           C+VDL  RA  + +AL  +E MP   N V+W +L+ ACR  G  +LAE   +++++L+PD
Sbjct: 358 CVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPD 417

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
             G  V+LSN+YA   +W    +LRK MK +GI K   CS IE+N  +++F+  DRSH Q
Sbjct: 418 SCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQ 477

Query: 612 TDQIYEKLNEVISELK-PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD 670
           T+QIY  + E+   +    G+VP   + L D+E+EEK   +  HSEKLA+  GLIS+   
Sbjct: 478 TEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSG 537

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S IRIVKNLRVC DCH+F+K+ SKVY REIV RDR+RFHH+K+G CSC D+W
Sbjct: 538 SPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 209/413 (50%), Gaps = 44/413 (10%)

Query: 20  SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA 79
           + C+S++  KQ HA +L+   +H   N L    L++  +L  +    L YA  +F+Q+  
Sbjct: 19  THCTSISKTKQAHALLLR---THLLHNPLFSSKLISFLALSHS--GDLNYARKLFTQMQN 73

Query: 80  PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQV 139
           P   + N  IR  + S  P  A+ ++  M+  G+ +D +++P +L A AR   +  G + 
Sbjct: 74  PDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRF 133

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
           H    K GFGSD FV   L+  Y  CG    A  +FD+ + RD+V W++MI+ +   GL 
Sbjct: 134 HCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLS 193

Query: 200 DEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF---IIDNNVALDAHL 255
           ++  +L +EM K+ N+ PDE+ +  ++ AC++ GNL  G+ +H +   +    +  D  L
Sbjct: 194 EKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVL 253

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
           ++ L+ MYA CG +D+A  +F ++ ++N+    A++ G +  G  EDA  +FDQM    L
Sbjct: 254 ETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKL 313

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           +                               PD VT ++++ AC+H G++D+   +   
Sbjct: 314 M-------------------------------PDDVTFIALLCACSHAGLVDEGLAMFQA 342

Query: 376 IDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINA 425
           + KN F  + R+ +   ++D+  +   ++ A    E M  + N + W +++ A
Sbjct: 343 M-KNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGA 394


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/520 (41%), Positives = 319/520 (61%), Gaps = 31/520 (5%)

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           L +F  M   ++ PD      +L A ++  +   G+ +H  +I      D +  + L+ +
Sbjct: 74  LYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHL 133

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           Y  C C+                              + DA  +FD+M E++ + W+A+I
Sbjct: 134 Y--CTCLS-----------------------------ISDASQLFDEMPERNAVTWNALI 162

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
           +GY  N    +A+  F  M   G +P + T++ V+SAC+HLG  +Q + IH +I  N   
Sbjct: 163 TGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLR 222

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            ++ V  A+IDMYAKCG++    +VFE +R +NV +W  +I+ +A++G    AL  F++M
Sbjct: 223 LNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRM 282

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
             E+  P+ VTF+GVL AC H GLV EGR  F SM  ++ + P+ EHYGCMVDL GRA L
Sbjct: 283 LMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGL 342

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
           L EALEL+++M   P+ +IW +L+ ACRVHG  +L E+  K+L++L+P++    VLLSNI
Sbjct: 343 LEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNI 402

Query: 563 YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
           Y++++RW +VG+LR  M  RGI K   CS IE+NN VYEF+ ++    + + IY++L+ +
Sbjct: 403 YSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNL 462

Query: 623 ISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVC 682
           I +LK  GYV     AL D+E EEK   +++HSEKLAL +GL++S  D  +RIVKNLR+C
Sbjct: 463 IKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRIC 522

Query: 683 EDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            DCH F K++S VY R IV+RDR RFHH+ +G CSC+DYW
Sbjct: 523 LDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 176/365 (48%), Gaps = 36/365 (9%)

Query: 73  IFSQIPAP-PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
           IFS+      S+  N  IR     ++  ++L +F  M    +  D  +FP +LKA A+  
Sbjct: 44  IFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLC 103

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
               G  +HG+  ++GF  D +  T LV +Y  C  I DA  +FD+M  R+ V W+ +I 
Sbjct: 104 DTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALIT 163

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           GY  N  F + ++ F  M     +P E  +  +LSACS  G  + G+ +HEFI  N + L
Sbjct: 164 GYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRL 223

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           +  + + LI MYA CG +   + +F+++  KN+     ++SGY+  GQ  DA        
Sbjct: 224 NVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQ-GDA-------- 274

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
                                 AL+ F+ M +   KPD+VT L V+ AC H G++ +  R
Sbjct: 275 ----------------------ALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEG-R 311

Query: 372 IHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAI 428
                 K  FG   R+ +   ++D+  + G LE A E+ + M    + I W +++ A  +
Sbjct: 312 WQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRV 371

Query: 429 HGDAR 433
           HG+ +
Sbjct: 372 HGNTK 376


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/579 (39%), Positives = 342/579 (59%), Gaps = 53/579 (9%)

Query: 156 TGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215
            GLV  Y   G I +AR +FDKM  R++V W+ MI GY Q GL +E   LF  M   NV 
Sbjct: 29  NGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVV 88

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
              ++L  ++                                         G +D A+ L
Sbjct: 89  SWTVMLGGLIED---------------------------------------GRVDEARQL 109

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG----------- 324
           FD + +K++V ST M+ G    G++ +AR IFD+M +++++ W++MISG           
Sbjct: 110 FDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMI 169

Query: 325 --YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
             Y       EAL LF+ MQ  G++P   +++SV+S C  L  LD  +++H  + ++ F 
Sbjct: 170 KIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFD 229

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            D+ V++ +I MY KCG L +A+ VF+R   ++++ W S+I  +A HG    AL  F+ M
Sbjct: 230 IDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDM 289

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
              SI P+ +TFIGVL ACS+ G V EG EIF SM ++Y + PK EHY CMVDL GRA  
Sbjct: 290 FSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGK 349

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
           L EA+ L+E MP   + ++WG+L+ ACR H  ++LAE AAK+LLQL+P++ G  +LLSN+
Sbjct: 350 LNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNL 409

Query: 563 YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL-TADRSHKQTDQIYEKLNE 621
           Y+   RW+DV ELRK+M+ + + K   CS IE++ +V+ F      SH + + I +KL +
Sbjct: 410 YSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGK 469

Query: 622 VISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRV 681
           + + L+ AGY PD    + D+++EEK   +  HSEKLA+ YGL+   +   IR++KNLRV
Sbjct: 470 LGALLREAGYCPDGSFVMHDVDEEEKVHSLRDHSEKLAVAYGLLKVPEGMPIRVMKNLRV 529

Query: 682 CEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
           C D H+ IKL+++V  REI++RD  RFHH+KDG+CSC D
Sbjct: 530 CGDSHSTIKLIAQVTGREIILRDTNRFHHFKDGLCSCSD 568



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 147/316 (46%), Gaps = 50/316 (15%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG-------------YFQNG 197
           D    T ++    + G++++AR +FD+M  R++V W+ MI G             Y + G
Sbjct: 117 DVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKG 176

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
              E L LF  M+   V P    +  +LS C    +L +G  VH  ++ +   +D ++ S
Sbjct: 177 FELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSS 236

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
            LITMY  CG +  AK +FD+   K++V+  ++++GY                       
Sbjct: 237 VLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGY----------------------- 273

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
                   A++   ++AL++F++M    + PD++T + V+SAC++ G + +   I   + 
Sbjct: 274 --------AQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESM- 324

Query: 378 KNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARN 434
           K+ +  D +  +   ++D+  + G L  A  + E M    + I W +++ A   H +   
Sbjct: 325 KSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDL 384

Query: 435 ALIFFNKMKDESIDPN 450
           A I   K+    ++PN
Sbjct: 385 AEIAAKKLL--QLEPN 398



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 37/226 (16%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE---GMQVHGLGTKLGFGSDPFVQTG 157
           AL +F  M  EG+   R SFP ++  ++    L     G QVH    +  F  D +V + 
Sbjct: 181 ALALFSLMQREGV---RPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSV 237

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+ MY  CG ++ A+ +FD+ S +DIV W+ +I GY Q+G  ++ L +F +M  S++ PD
Sbjct: 238 LITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPD 297

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           E+    +LSACS  G +  G  + E       ++ +  Q    T +  C           
Sbjct: 298 EITFIGVLSACSYTGKVKEGLEIFE-------SMKSKYQVDPKTEHYAC----------- 339

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM-VEKDLICWSAMI 322
                       MV    RAG++ +A  + + M VE D I W A++
Sbjct: 340 ------------MVDLLGRAGKLNEAMNLIENMPVEADAIVWGALL 373



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 136/286 (47%), Gaps = 52/286 (18%)

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           ++GY +  +  +AR +FD+M E + I W+ ++SGY +N    EA K+F++M      P++
Sbjct: 1   MAGYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKM------PER 54

Query: 351 --VTMLSVISACAHLGVLDQAQRIHLYI-DKNA------FGG---DLRVNNA-------- 390
             V+  ++I      G++++A+ +   + ++N        GG   D RV+ A        
Sbjct: 55  NVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMP 114

Query: 391 ---------IIDMYAKCGSLESAREVFERMRRRNVISWTSMINA-------------FAI 428
                    +ID     G L  ARE+F+ M +RNV++WTSMI+              +  
Sbjct: 115 VKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYER 174

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT-NEYNIPPKY 487
            G    AL  F+ M+ E + P+  + I VL  C     +D GR++ + +  ++++I    
Sbjct: 175 KGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYV 234

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
                ++ ++ +   L  A  + +    + ++V+W S++A    HG
Sbjct: 235 S--SVLITMYIKCGDLVTAKRVFDRFS-SKDIVMWNSIIAGYAQHG 277



 Score = 46.2 bits (108), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 40/233 (17%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +P+ P  +   +   S +SL H +Q H+Q+++   S    +  +  +L+T +        
Sbjct: 194 RPSFPSVISVLSVCGSLASLDHGRQVHSQLVR---SQFDIDIYVSSVLITMY----IKCG 246

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
            L  A  +F +  +    + N  I   +     + AL+VF  M +  +  D  +F  +L 
Sbjct: 247 DLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLS 306

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A +    + EG+++     K  +  DP  +      + AC                    
Sbjct: 307 ACSYTGKVKEGLEIFE-SMKSKYQVDPKTE------HYAC-------------------- 339

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
              M+D   + G  +E +NL E M    VE D +V   +L AC    NL   E
Sbjct: 340 ---MVDLLGRAGKLNEAMNLIENMP---VEADAIVWGALLGACRTHKNLDLAE 386


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/615 (37%), Positives = 362/615 (58%), Gaps = 5/615 (0%)

Query: 113 LTIDRFSFPPILKAIARAEGLLEGMQVHG--LGTKLGFGSDPFVQTGLVGMYGACGKILD 170
           L +D   +  +++    A  +    ++H   L         PF+   L+ MYG CG++  
Sbjct: 56  LELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPY 115

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           AR +F+ M  R++  W+V +  +  NG   E L  F  M  S   PD +  S IL+A ++
Sbjct: 116 ARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQ 175

Query: 231 AGN--LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
            G   +  G  +H +   + +  +  + + +I+MY  CG +D A+  F+++  KN V   
Sbjct: 176 MGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWN 235

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ-VCGMK 347
           AM++ Y   G+  +A  +F +M + D +CW+AMI+ YA++   ++AL L+  M     + 
Sbjct: 236 AMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLA 295

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           P + T ++VI  CA L  L Q + IH  +    F  +L V+NA++ MY KCG L+ A +V
Sbjct: 296 PKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDV 355

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F  M+ ++ ISW ++I+++A HG +  AL+ + +M  + + P  VTF+G+L ACSH GLV
Sbjct: 356 FHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLV 415

Query: 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
            +G + F  M +++ I P   H+GC++DL GR   L EA  ++++MP   N V W SL+ 
Sbjct: 416 ADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLG 475

Query: 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587
           AC+ HG+++    AA Q++   P   G  VLLSNIYA   RW+DV ++RK M  RG+ K 
Sbjct: 476 ACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKS 535

Query: 588 RACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEK 647
              S IE+ + V+EF++ D SH Q ++IY +L +++ E+K  GYVPD  S   DLE+EEK
Sbjct: 536 PGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEK 595

Query: 648 REVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTR 707
            ++++ HSEKLA+ YG +     S +RIVKNLRVC DCH   K +S++  R+IV+RD  R
Sbjct: 596 EDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAAR 655

Query: 708 FHHYKDGVCSCKDYW 722
           FH +++G CSC+DYW
Sbjct: 656 FHLFENGSCSCRDYW 670


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/731 (33%), Positives = 381/731 (52%), Gaps = 76/731 (10%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           SL  A+ +F +I      +    I A         A+ +F ++L EG+ +D   F  +L 
Sbjct: 77  SLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLS 136

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS-YRDIV 184
           A +  E L  G  +H    + G G    V + LV MYG CG + DA  +F  +  + D+V
Sbjct: 137 ACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVV 196

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL--SYGEAVHE 242
            W+ MI    QNG   E L +F  M    + PD +    +  ACS + +L  S  +  H 
Sbjct: 197 LWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHA 256

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV-- 300
            + +  +  D  + + L+  YA CG +D A+  F ++  +N V  T+M++ +++ G +  
Sbjct: 257 CLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIGHLLA 316

Query: 301 --------------------------EDARLIFDQMVE---------KDLICWSAMISGY 325
                                     ED R+   ++VE          D+   + ++  Y
Sbjct: 317 VETFHAMLLEGVVPTRSTLFAALEGCEDLRVA--RLVEAIAQEIGVVTDVAIVTDLVMAY 374

Query: 326 AENNHPQEALKLFNEMQ-----------------VC----------------GMKPDKVT 352
           A  +  ++A+++F+  +                  C                G+ PD++ 
Sbjct: 375 ARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRIL 434

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
            ++ + ACA L  L + ++IH  +  +     D+ + NAI+ MY +CGSL  AR+ F+ M
Sbjct: 435 YITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGM 494

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471
             R+ ISW +M++A A HG   +    F  M  E  D   + F+ +L AC+HAGLV  G 
Sbjct: 495 PARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERIAFLNLLSACAHAGLVKAGC 554

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
           E F++MT ++ + P  EHYGCMVDL GR   L +A  +V+ MP  P+   W +LM ACR+
Sbjct: 555 EHFSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRI 614

Query: 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACS 591
           +G+ E   FAA+++L+L  DH  A V L NIY+   RW D   +RK M + G+ K    S
Sbjct: 615 YGDTERGRFAAERVLELRADHTAAYVALCNIYSAAGRWDDAAAVRKIMADLGLRKIPGVS 674

Query: 592 RIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVI 651
            IE+ ++V+EF+  DRSH Q++ IY +L  V+  ++ AGY       L D+E+E+K +++
Sbjct: 675 SIEIRSKVHEFVVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLL 734

Query: 652 LWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHY 711
            +HSEKLA+ +G++S+ + S +R++KNLRVC DCHN  K +SKV+ REIV+RD  RFHH+
Sbjct: 735 RFHSEKLAIAFGMMSTPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHF 794

Query: 712 KDGVCSCKDYW 722
           KDG CSC DYW
Sbjct: 795 KDGACSCGDYW 805



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 150/313 (47%), Gaps = 33/313 (10%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D ++ + LV MY  CG +  A  +F K++++ IV W+V+I  Y   G     + LF  + 
Sbjct: 61  DGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRIL 120

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
              +  D +V   +LSACS    L+ G  +H   ++  + L   + S L++MY  CG + 
Sbjct: 121 QEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLR 180

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            A  LF                     G +E            D++ W+AMI+  ++N  
Sbjct: 181 DANALF---------------------GHLER---------HLDVVLWNAMITANSQNGS 210

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL--DQAQRIHLYIDKNAFGGDLRVN 388
           P+EAL++F  M   G+ PD VT +SV  AC+    L   Q +  H  +D+   G D+ V 
Sbjct: 211 PREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACLDETGLGSDVVVA 270

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
            A+++ YA+CG ++ AR+ F  M  RN +SWTSMI AF   G    A+  F+ M  E + 
Sbjct: 271 TALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIGHLL-AVETFHAMLLEGVV 329

Query: 449 PNGVTFIGVLYAC 461
           P   T    L  C
Sbjct: 330 PTRSTLFAALEGC 342



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 89/170 (52%), Gaps = 3/170 (1%)

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
           D  + ++++ MY +CGSLESA +VF ++  ++++ WT +I+A+   G +  A+  F+++ 
Sbjct: 61  DGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRIL 120

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
            E I  + + F+ VL ACS    +  GR I      E  +  +      +V ++GR   L
Sbjct: 121 QEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAV-EAGLGLQEIVASALVSMYGRCGSL 179

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD--PD 551
           R+A  L   +    +VV+W +++ A   +G    A     ++LQL   PD
Sbjct: 180 RDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPD 229


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/729 (33%), Positives = 382/729 (52%), Gaps = 72/729 (9%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           SL  A+ +F +I      +    I A         A+ +F ++L EG+ +D   F  +L 
Sbjct: 77  SLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLS 136

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS-YRDIV 184
           A +  E L  G  +H    + G G    V + LV MYG CG + DA  +F  +  + D+V
Sbjct: 137 ACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVV 196

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL--SYGEAVHE 242
            W+ MI    QNG   E L +F  M    + PD +    +  ACS + +L  S  +  H 
Sbjct: 197 LWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHT 256

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV-- 300
            + +  +  D  + + L+  YA CG +D A+  F  +  +N V  T+M++ +++ G +  
Sbjct: 257 CLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQIGHLLA 316

Query: 301 --------------------------ED---ARLI----FDQMVEKDLICWSAMISGYAE 327
                                     ED   ARL+     +  V  D+   + ++  YA 
Sbjct: 317 VETFHAMLLEGVVPTRSTLFAALEGCEDLHTARLVEAIAQEIGVATDVAIVTDLVMAYAR 376

Query: 328 NNHPQEALKLFNEMQ-----------------VC----------------GMKPDKVTML 354
            +  ++A+++F+  +                  C                G+ PD++  +
Sbjct: 377 CDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYI 436

Query: 355 SVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
           + + ACA L  L + ++IH  +  +     D+ + NAI+ MY +CGSL  AR+ F+ M  
Sbjct: 437 TALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPA 496

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           R+ ISW +M++A A HG   +    F  M  E  D   V F+ +L AC+HAGLV+ G E 
Sbjct: 497 RDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERVAFLNLLSACAHAGLVEAGCEH 556

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           F++MT ++ + P  EHYGCMVDL GR   L +A  +V+ MP  P+   W +LM ACR++G
Sbjct: 557 FSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYG 616

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
           + E   FAA+++L+L  +H  A V L NIY+   RW+D   +RK M + G+ K    S I
Sbjct: 617 DTERGRFAAERVLELRANHTAAYVALCNIYSAAGRWEDAAAVRKIMADLGLRKIPGVSSI 676

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW 653
           E+ ++V+EF+  DRSH Q++ IY +L  V+  ++ AGY       L D+E+E+K +++ +
Sbjct: 677 EIRSKVHEFVVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRF 736

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HSEKLA+ +G++S+ + S +R++KNLRVC DCHN  K +SKV+ REIV+RD  RFHH+KD
Sbjct: 737 HSEKLAIAFGMMSTPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKD 796

Query: 714 GVCSCKDYW 722
           G CSC DYW
Sbjct: 797 GACSCGDYW 805



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 151/313 (48%), Gaps = 33/313 (10%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D ++ + LV MY  CG +  A  +F K++++ IV W+V+I  Y   G     + LF  + 
Sbjct: 61  DGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRIL 120

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
              +  D +V   +LSACS    L+ G  +H   ++  + L   + S L++MY  CG + 
Sbjct: 121 QEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLR 180

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            A  LF                     G +E            D++ W+AMI+  ++N  
Sbjct: 181 DANALF---------------------GHLER---------HLDVVLWNAMITANSQNGS 210

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL--DQAQRIHLYIDKNAFGGDLRVN 388
           P+EAL++F  M   G+ PD VT +SV  AC+    L   Q +  H  +D+   G D+ V 
Sbjct: 211 PREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHTCLDETGLGSDVVVA 270

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
            A+++ YA+CG ++ ARE F  M  RN +SWTSMI AFA  G    A+  F+ M  E + 
Sbjct: 271 TALVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQIGHLL-AVETFHAMLLEGVV 329

Query: 449 PNGVTFIGVLYAC 461
           P   T    L  C
Sbjct: 330 PTRSTLFAALEGC 342



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 89/170 (52%), Gaps = 3/170 (1%)

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
           D  + ++++ MY +CGSLESA +VF ++  ++++ WT +I+A+   G +  A+  F+++ 
Sbjct: 61  DGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRIL 120

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
            E I  + + F+ VL ACS    +  GR I      E  +  +      +V ++GR   L
Sbjct: 121 QEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAV-EAGLGLQEIVASALVSMYGRCGSL 179

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD--PD 551
           R+A  L   +    +VV+W +++ A   +G    A     ++LQL   PD
Sbjct: 180 RDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPD 229


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/638 (37%), Positives = 371/638 (58%), Gaps = 37/638 (5%)

Query: 93  SWSHRPKH--ALKVFLKMLNEGLTIDRFSFPPILKAIARAEG--LLEGMQVHGLGTKLGF 148
           ++SH   H  AL  F +M   G   DR +F  IL AIA+     + +G ++H      G 
Sbjct: 3   AFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGL 62

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
             +  V T ++ MYG CG++ DAR  F+++ +++ V W+ M+  Y  +G   E L LF E
Sbjct: 63  LPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFRE 122

Query: 209 M--KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
           M  +  +  PD+   S  + ACS   +L  G  +HE +                      
Sbjct: 123 MCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREG------------------ 164

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV-EKDLICWSAMISGY 325
                      K L K++VV TA+++ YS+ G +E+AR +FD +  + D +CW+AMI+ Y
Sbjct: 165 -----------KELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAY 213

Query: 326 AENNHPQEALKLFNEMQ-VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           A++   ++AL L+  M     + P + T ++VI  CA L  L Q + IH  +    F  +
Sbjct: 214 AQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDAN 273

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
           L V+NA++ MY KCG L+ A +VF  M+ ++ ISW ++I+++A HG +  AL+ + +M  
Sbjct: 274 LLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDL 333

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
           + + P  VTF+G+L ACSH GLV +G + F  M +++ I P   H+GC++DL GR   L 
Sbjct: 334 QGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLA 393

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
           EA  ++++MP   N V W SL+ AC+ HG+++    AA Q++   P   G  VLLSNIYA
Sbjct: 394 EAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYA 453

Query: 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVIS 624
              RW+DV ++RK M  RG+ K    S IE+ + V+EF++ DRSH Q ++IY +L +++ 
Sbjct: 454 AAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVE 513

Query: 625 ELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCED 684
           E+K  GYVPD  S   DLE+EEK ++++ HSEKLA+ YG +     S +RIVKNLRVC D
Sbjct: 514 EMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLD 573

Query: 685 CHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           CH   K +S++  R+IV+RD  RFH +++G CSC+DYW
Sbjct: 574 CHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 611



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 7/218 (3%)

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI---SACAHLGVLDQAQRIHLYIDK 378
           ++ ++ N    EAL  F  M   G +PD+VT  SVI    A      +DQ + IH Y   
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVT-FSVILAAIAQMGAAAIDQGREIHRYARI 59

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
           +    ++ V  A+I MY KCG L+ AR  FE ++ +N ++W +M+  + + G  R AL  
Sbjct: 60  SGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALEL 119

Query: 439 FNKM--KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG-CMVD 495
           F +M  +  S  P+  +F   + ACS+   +++GREI   +  E     K    G  +++
Sbjct: 120 FREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLN 179

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           ++ +   L EA ++ +++    + V W +++AA   HG
Sbjct: 180 MYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHG 217



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 8/241 (3%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCSSLTHMKQTHA--QILKLSHSHHSQNSLLLKLLLTSFS 58
           M   S+  +P     S AI +CS+L  ++Q     ++L+       ++ ++   LL  +S
Sbjct: 123 MCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYS 182

Query: 59  LPTTTPSSLYYALSIFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNE-GLTID 116
                   L  A  +F  I      V  N  I A +   R K AL ++  M +   L   
Sbjct: 183 ----KCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPK 238

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
           + +F  ++   A    L +G  +H       F ++  V   LV MYG CG + +A  +F 
Sbjct: 239 QGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFH 298

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
            M  +D + W+ +I  Y  +G  D+ L L++EM +  V+P E+    +LSACS  G ++ 
Sbjct: 299 SMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVAD 358

Query: 237 G 237
           G
Sbjct: 359 G 359


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/553 (41%), Positives = 329/553 (59%), Gaps = 36/553 (6%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           AR +FD +++ D   ++ +I  +  +      L+LF +M M+ V PD      +L AC+R
Sbjct: 41  ARSIFDLIAFPDTFAFNTIIRAH-ADSSPSFSLSLFSKMAMAGVSPDHFTFPFVLKACAR 99

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
              L  G  +H  +       D ++Q+ LI  Y  CG +D A        LK        
Sbjct: 100 ---LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFA--------LK-------- 140

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG-MKPD 349
                          +F++M E+DL+ WS+MI+ +A+N    EAL LF  MQ+ G +KPD
Sbjct: 141 ---------------VFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPD 185

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           +V +LSV+SA + LG L+  + I  +I +N     + +  A++DM+++CG +E +  VF+
Sbjct: 186 EVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFD 245

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            M  RNV++WT++IN  A+HG +  AL  F +M++    P+ VTF GVL ACSH GLV E
Sbjct: 246 EMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSE 305

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G  +F S+ NEY + P  EHYGCMVDL GRA LL EA + V+ MP  PN +IW +L+ AC
Sbjct: 306 GWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGAC 365

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
             H  IELAE   +++ +LD  HDG  VLLSN+Y    RW +   +R SM+E+ I K+  
Sbjct: 366 VNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPG 425

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
           CS I +N+ ++EF+  D +H Q + I E L  +I  LK  GY PDI + L D+E+EEK  
Sbjct: 426 CSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKES 485

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
            + +HSEKLA+ + L+  K    IR++KNLR+C DCH F+K  S V+ REI+IRDR RFH
Sbjct: 486 TLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFH 545

Query: 710 HYKDGVCSCKDYW 722
           H+  G CSC+DYW
Sbjct: 546 HFSKGSCSCRDYW 558



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 132/409 (32%), Positives = 214/409 (52%), Gaps = 45/409 (11%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV 84
           + H+ + HA++LK  H +H    L L+ LL   S   + P+SL YA SIF  I  P +  
Sbjct: 1   MNHIYKLHARLLKTGHHNHP---LALRRLL--LSCAASAPASLSYARSIFDLIAFPDTFA 55

Query: 85  SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
            N  IRA +    P  +L +F KM   G++ D F+FP +LKA AR   L  G+ +H L  
Sbjct: 56  FNTIIRAHA-DSSPSFSLSLFSKMAMAGVSPDHFTFPFVLKACAR---LQTGLDLHSLLF 111

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           KLGF SD +VQ GL+  YG CG +  A  +F++M  RD+V WS MI  + +NG   E L 
Sbjct: 112 KLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALA 171

Query: 205 LFEEMKM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
           LF+ M++   V+PDE+++  ++SA S  G+L  G+ +  FI  N +     L + L+ M+
Sbjct: 172 LFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMF 231

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
           + CGC++ +  +FD++  +N++  TA+++G +  G+                        
Sbjct: 232 SRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGR------------------------ 267

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
                    EAL++F EM+  G +PD VT   V+ AC+H G++ +   +   I +N +G 
Sbjct: 268 -------SAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESI-RNEYGM 319

Query: 384 DLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           +    +   ++D+  + G L  A +  + M  R N I W +++ A   H
Sbjct: 320 EPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNH 368


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/615 (37%), Positives = 365/615 (59%), Gaps = 18/615 (2%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDP--FVQTGLVGMYGACGKILDARLMFDK--M 178
           +L+  A    L  G ++H + T  G    P  ++   L   Y + G+++ A+ +FD+  +
Sbjct: 12  LLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPL 71

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
           S +D V W+ ++  + + GL    + LF EM+   VE D++ +  +   C++  +L + +
Sbjct: 72  SEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQ 131

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
             H   +   V     + + L+ MY  CG +   K +F+++  K++V  T ++    +  
Sbjct: 132 QGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWE 191

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPDKVTMLSVI 357
            +E  R +F +M E++ + W+ M++GY      +E L+L  EM   CG   + VT+ S++
Sbjct: 192 GLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSML 251

Query: 358 SACAHLGVLDQAQRIHLY-------IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           SACA  G L   + +H+Y       + + A   D+ V  A++DMYAKCG+++S+  VF  
Sbjct: 252 SACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRL 311

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           MR+RNV++W ++ +  A+HG  R  +  F +M  E + P+ +TF  VL ACSH+G+VDEG
Sbjct: 312 MRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDEG 370

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
              F S+   Y + PK +HY CMVDL GRA L+ EA  L+  MP  PN V+ GSL+ +C 
Sbjct: 371 WRCFHSL-RFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCS 429

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
           VHG++E+AE   ++L+Q+ P +    +L+SN+Y  + R      LR S+++RGI K    
Sbjct: 430 VHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGL 489

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLED---EEK 647
           S I +N+ V+ F + DRSH +T +IY KLNEVI  ++ AGYVPD+ S LV   +   EEK
Sbjct: 490 SSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDV-SGLVSHSEGDLEEK 548

Query: 648 REVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTR 707
            + +  HSEKLA+C+GL+ +K  + + + KNLR+C DCH+ +K+VSKVY REI+IRDR R
Sbjct: 549 EQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNR 608

Query: 708 FHHYKDGVCSCKDYW 722
           FH +K G CSC DYW
Sbjct: 609 FHQFKGGSCSCSDYW 623



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 163/378 (43%), Gaps = 76/378 (20%)

Query: 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           +++K+F++M  + + ID  S   +    A+ E L    Q HG+  K+G  +   V   L+
Sbjct: 94  NSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALM 153

Query: 160 GMYGACG---------------------KILD----------ARLMFDKMSYRDIVPWSV 188
            MYG CG                      +LD           R +F +M  R+ V W+V
Sbjct: 154 DMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTV 213

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV-LSKILSACSRAGNLSYGEAVHEFIIDN 247
           M+ GY   G   EVL L  EM          V L  +LSAC+++GNL  G  VH + +  
Sbjct: 214 MVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKK 273

Query: 248 NVAL-------DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
            + +       D  + + L+ MYA CG +D +  +F  +  +N+V   A+ SG +  G+ 
Sbjct: 274 EMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKG 333

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
                +F QM+ +                                +KPD +T  +V+SAC
Sbjct: 334 RMVIDMFPQMIRE--------------------------------VKPDDLTFTAVLSAC 361

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVI 417
           +H G++D+  R   +     +G + +V++   ++D+  + G +E A  +   M    N +
Sbjct: 362 SHSGIVDEGWRC--FHSLRFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEV 419

Query: 418 SWTSMINAFAIHGDARNA 435
              S++ + ++HG    A
Sbjct: 420 VLGSLLGSCSVHGKVEIA 437


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/600 (37%), Positives = 355/600 (59%), Gaps = 31/600 (5%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +L++ AR    +EGM  H    ++G  +D      L+ MY  CG +  AR +FD+M  R 
Sbjct: 53  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 112

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +V W+ M+  + QNG  ++ L LF +M+       E  +S ++ AC+    +   + +H 
Sbjct: 113 LVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHG 172

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           F +    ALD+                             N+ V TA++  Y++ G V+D
Sbjct: 173 FAL--KTALDS-----------------------------NVFVGTALLDVYAKCGLVKD 201

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           A L+F+ M E+  + WS+M++GY +N   +EAL LF+  Q  G++ ++ T+ S +SACA 
Sbjct: 202 ANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAA 261

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
              L + +++     K   G ++ V +++IDMYAKCG +E A  VF  +  +NV+ W ++
Sbjct: 262 RAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAI 321

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           ++ F+ H  +  A+I+F KM+   I PN +T+I VL ACSH GLV++GR+ F  M   +N
Sbjct: 322 LSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHN 381

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           + P   HY CMVD+ GRA LL EA + ++ MPF     +WGSL+A+CR++  +ELAE AA
Sbjct: 382 VSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAA 441

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           K L +++P + G  VLLSNIYA + RW++V   R  +KE    KER  S IE+ ++V+ F
Sbjct: 442 KHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSF 501

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
           +  +R+H +  +IY KL +++ E+K  GY       L D+E+  K+E++  HSEKLAL +
Sbjct: 502 MVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTF 561

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           G++     + IRI+KNLR+C DCH+F+KL S +  REI++RD  RFHH+K+G CSC ++W
Sbjct: 562 GIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 621



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 192/400 (48%), Gaps = 40/400 (10%)

Query: 32  HAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRA 91
           HAQI+++       +++   +L+  +S      S    A  +F ++P       N  + +
Sbjct: 70  HAQIIRVGLR---ADTITSNMLMNMYSKCGLVES----ARKLFDEMPVRSLVSWNTMVGS 122

Query: 92  ISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSD 151
            + +   + AL +F++M  EG +   F+   ++ A A    + E  Q+HG   K    S+
Sbjct: 123 HTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSN 182

Query: 152 PFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
            FV T L+ +Y  CG + DA L+F+ M  R  V WS M+ GY QN L++E L LF   + 
Sbjct: 183 VFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQA 242

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
             +E ++  +S  LSAC+    L  G+ V        +  +  + S+LI MYA CG ++ 
Sbjct: 243 MGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEE 302

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
           A  +F  V  KN+V+  A++SG+SR                               +   
Sbjct: 303 AYTVFSSVEEKNVVLWNAILSGFSR-------------------------------HVRS 331

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNA 390
            EA+  F +MQ  G+ P+ +T +SV+SAC+HLG++++ ++   L I  +    ++   + 
Sbjct: 332 LEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSC 391

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIH 429
           ++D+  + G L  A++  +RM      S W S++ +  I+
Sbjct: 392 MVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIY 431



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 149/312 (47%), Gaps = 33/312 (10%)

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           L  +L + +R      G A H  II   +  D    + L+ MY+ CG ++ A+ LFD++ 
Sbjct: 50  LQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMP 109

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
           +++LV    MV  +++ G  E                               +AL LF +
Sbjct: 110 VRSLVSWNTMVGSHTQNGDCE-------------------------------KALVLFMQ 138

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQ  G    + T+ SV+ ACA    + + +++H +  K A   ++ V  A++D+YAKCG 
Sbjct: 139 MQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGL 198

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           ++ A  VFE M  R+ ++W+SM+  +  +     AL+ F++ +   ++ N  T    L A
Sbjct: 199 VKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSA 258

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           C+    + EG+++ A ++ +  I         ++D++ +  ++ EA  +  ++    NVV
Sbjct: 259 CAARAALIEGKQVQA-VSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVE-EKNVV 316

Query: 521 IWGSLMAACRVH 532
           +W ++++    H
Sbjct: 317 LWNAILSGFSRH 328


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/607 (37%), Positives = 351/607 (57%), Gaps = 33/607 (5%)

Query: 117 RF-SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           RF  +   + A    + L EG QVH    K  +    ++ T L+ +Y  CG + DAR + 
Sbjct: 40  RFHDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVL 99

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           D M  R++V W+ MI GY Q+G   E L LF  M  +  + +E  L+ +L++C    ++ 
Sbjct: 100 DGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQ 159

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
             E VH  ++  N   ++H       M+     +DM                      Y 
Sbjct: 160 QVEQVHSLVVKTN--FESH-------MFVGSSLLDM----------------------YG 188

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           ++G +++AR +FD + E+D +  +A+ISGYA+     EAL LF ++   GM+ + VT  +
Sbjct: 189 KSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTT 248

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           ++++ + L  L+  +++H  I +      + + N++IDMY+KCG L  +R VF+ M +R+
Sbjct: 249 LLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRS 308

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
            ISW +M+  +  HG  +  +  F  M +E + P+ VT + VL  CSH GLVDEG +IF 
Sbjct: 309 AISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFD 367

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
            +  E N      HYGC++DL GR+  L++AL+L+E MPF P   IWGSL+ ACRVH  +
Sbjct: 368 LIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINV 427

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
            + E  A++LL ++P + G  V+LSNIYA    W+DV  +RK M E  + KE A S I +
Sbjct: 428 SVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIIL 487

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
           +  ++ F +++R H +   I  K+ EV  ++K AG+VPD+   L D++DE+K  ++L HS
Sbjct: 488 DKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFVPDLSCVLHDVDDEQKERMLLGHS 547

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ +GL+++     I+++KNLR+C DCHNF K VSKVY REI +RD+ RFH  KDG 
Sbjct: 548 EKLAITFGLMNTPPGLTIQVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLLKDGA 607

Query: 716 CSCKDYW 722
           C+C DYW
Sbjct: 608 CTCGDYW 614



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 203/436 (46%), Gaps = 50/436 (11%)

Query: 17  TAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
            AI++C    +L   +Q HA ++K  +            L T   +      +L  A ++
Sbjct: 46  AAITACVERQALGEGRQVHAHMVKARYRPPV-------YLATRLIILYVRCGALDDARNV 98

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
              +P          I   S S R   AL++F++ML  G   + F+   +L +    + +
Sbjct: 99  LDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSI 158

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
            +  QVH L  K  F S  FV + L+ MYG  G I +AR +FD +  RD V  + +I GY
Sbjct: 159 QQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGY 218

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
            Q GL DE L+LF ++  S ++ + +  + +L++ S   +L+YG+ VH  I+   +    
Sbjct: 219 AQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFI 278

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
            LQ++LI MY+ CG +  ++ +FD +  ++ +   AM+ GY R G  ++   +F  M E+
Sbjct: 279 VLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE 338

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
                                           +KPD VT+L+V+S C+H G++D+   I 
Sbjct: 339 --------------------------------VKPDSVTLLAVLSGCSHGGLVDEGLDIF 366

Query: 374 LYI--DKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAI 428
             I  ++NA    + + +   +ID+  + G L+ A ++ E M      + W S++ A  +
Sbjct: 367 DLIVKEQNAV---IHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRV 423

Query: 429 HGDARNALIFFNKMKD 444
           H +     +   K+ D
Sbjct: 424 HINVSVGEVVAQKLLD 439


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/631 (35%), Positives = 357/631 (56%), Gaps = 41/631 (6%)

Query: 102 LKVFLKMLNEGLTIDRFS----------FPPILKAIARAEGLLEGMQVHGLGTKLGFGSD 151
           + VF     E L+  R+S          F  IL+  AR   ++E    HG   ++    D
Sbjct: 38  ISVFASYEQEELSPGRYSDEFNVVQASDFIEILQLCARNGAVMEAKACHGKTMRMELQGD 97

Query: 152 PFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
             +   L+  Y  CG +  AR +FD M  R +V W+ MI  Y +N +  E L++F EM+ 
Sbjct: 98  VTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRN 157

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
              +  E  +S +LSAC    +    + +H                          C+ M
Sbjct: 158 EGFKFSEFTISSVLSACGANCDALECKKLH--------------------------CLSM 191

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
              L       NL V TA++  Y++ G + DA  +F+ M +K  + WS+M++GY ++ + 
Sbjct: 192 KTSLD-----LNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNY 246

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           +EAL L+   Q   ++ ++ T+ SVI AC++L  L + +++H  I K+ FG ++ V ++ 
Sbjct: 247 EEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSA 306

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           +DMYAKCGSL  +  +F  ++ +N+  W ++I+ FA H   +  +I F KM+ + + PN 
Sbjct: 307 VDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNE 366

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
           VTF  +L  C H GLV+EGR  F  M   Y + P   HY CMVD+ GRA LL EA EL++
Sbjct: 367 VTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIK 426

Query: 512 TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
           ++PF P   IWGSL+A+CRV   +ELAE AAK+L +L+P++ G  VLLSNIYA +K+W++
Sbjct: 427 SIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQWEE 486

Query: 572 VGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY 631
           + + RK +++  + K R  S I++ ++V+ F   + SH +  +I   L+ ++ EL+  GY
Sbjct: 487 IAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNLVIELRKFGY 546

Query: 632 VPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKL 691
            P +   L D+E  +K E+++ HSEKLAL +GL+   + S +RI+KNLR+C DCH F+K 
Sbjct: 547 KPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVRIMKNLRICVDCHEFMKA 606

Query: 692 VSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            S    R I++RD  RFHH+ DG CSC ++W
Sbjct: 607 ASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 152/326 (46%), Gaps = 34/326 (10%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I   + +     AL +F +M NEG     F+   +L A       LE  ++H L  K
Sbjct: 133 NTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMK 192

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
                + +V T L+ +Y  CG I DA  +F+ M  +  V WS M+ GY Q+  ++E L L
Sbjct: 193 TSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLL 252

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           +   +  ++E ++  LS ++ ACS    L  G+ +H  I  +    +  + S+ + MYA 
Sbjct: 253 YRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAK 312

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
           CG +  +  +F +V  KN+ +   ++SG                               +
Sbjct: 313 CGSLRESYIIFSEVQEKNIELWNTIISG-------------------------------F 341

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385
           A++  P+E + LF +MQ  GM P++VT  S++S C H G++++ +R    + +  +G   
Sbjct: 342 AKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRF-FKLMRTTYGLSP 400

Query: 386 RV--NNAIIDMYAKCGSLESAREVFE 409
            V   + ++D+  + G L  A E+ +
Sbjct: 401 NVVHYSCMVDILGRAGLLSEAYELIK 426



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 87/168 (51%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A+ +F  +    S   +  +     S   + AL ++ +     L  ++F+   ++ A + 
Sbjct: 218 AVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSN 277

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L+EG Q+H +  K GFGS+ FV +  V MY  CG + ++ ++F ++  ++I  W+ +
Sbjct: 278 LAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTI 337

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           I G+ ++    EV+ LFE+M+   + P+E+  S +LS C   G +  G
Sbjct: 338 ISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEG 385


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/598 (37%), Positives = 348/598 (58%), Gaps = 7/598 (1%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           +  C S+  + Q HA ++      H  + +  ++L +  +LP      ++YA  +F +IP
Sbjct: 19  LRRCGSVHRLNQLHAHLVV-----HGVDDVTSQILASYCALPAG--GGVWYARQLFDRIP 71

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P   V N  IRA   SH P+ AL +   M+  G+  + F+ P +LKA AR +     M 
Sbjct: 72  DPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMV 131

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
            HG+  KLGF    FV   L+  Y + G + D+R  FD+M  R++V W+ MI+GY Q G 
Sbjct: 132 THGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGN 191

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
             E  +LFE M+   +  DE  L  +L ACS  GNL +G+ VH  ++     +D  L + 
Sbjct: 192 TREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANA 251

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           L+ MY  CG + MA   FD +  KN V  T+M+   ++   ++ AR  F+Q+ EK +I W
Sbjct: 252 LVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISW 311

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +AMIS Y +     EAL L+N M++ G+ PD+ T+ +V+SAC  LG L   + IH  I  
Sbjct: 312 NAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRD 371

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
           N     + + N+++DMYA+CG +++A  +F  M  +NVISW ++I A A+HG A++AL+F
Sbjct: 372 NFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMF 431

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F  M  ++  P+ +TF+ +L AC+H GL++ G+  F +M + YN+ P  EHY CMVDL G
Sbjct: 432 FRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLG 491

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558
           R   L +A++L++ MP  P+VV+WG+L+ ACR+HG I++ +   KQLL+L+    G  VL
Sbjct: 492 RGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVL 551

Query: 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           +SN+  +  +W+D+  LRK M+E G+ K    S IE N+ ++E       H+ +D +Y
Sbjct: 552 ISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNIHESGAEGIGHESSDDMY 609


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 237/687 (34%), Positives = 370/687 (53%), Gaps = 46/687 (6%)

Query: 20  SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA 79
           S+ +SL+  +Q HA ILK    + +    L   LL+ ++           A  +   +P 
Sbjct: 24  STTASLSQTRQAHAHILKTGLFNDTH---LATKLLSHYA----NNMCFADATLVLDLVPE 76

Query: 80  PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQV 139
           P     +  I A S  H+  HAL  F +ML  GL  D    P  +KA A    L    QV
Sbjct: 77  PNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQV 136

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
           HG+ +  GF SD FVQ+ LV MY  C +I DA  +FD+M   D+V WS ++  Y + G  
Sbjct: 137 HGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCV 196

Query: 200 DEVLNLFEEMKMSNV-----------------------------------EPDEMVLSKI 224
           DE   LF EM  S V                                   EPD   +S +
Sbjct: 197 DEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSV 256

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L A     +L  G  +H ++I   +  D  + S LI MY  C C      +FD++   ++
Sbjct: 257 LPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDV 316

Query: 285 VVSTAMVSGYSRAGQVEDARLIF----DQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
               A + G SR GQVE +  +F    DQ +E +++ W++MI+  ++N    EAL+LF E
Sbjct: 317 GSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFRE 376

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQ+ G+KP+ VT+  ++ AC ++  L   +  H +  +     D+ V +A+IDMYAKCG 
Sbjct: 377 MQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGR 436

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           ++++R  F+ +  +N++ W ++I  +A+HG A+ A+  F+ M+     P+ ++F  VL A
Sbjct: 437 IQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSA 496

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CS +GL +EG   F SM+++Y I  + EHY CMV L  RA  L +A  ++  MP  P+  
Sbjct: 497 CSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDAC 556

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           +WG+L+++CRVH  + L E AA++L +L+P + G  +LLSNIYA    W +V  +R  MK
Sbjct: 557 VWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMK 616

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
            +G+ K   CS IE+ N+V+  L  D+SH Q  QI E L+++  E+K  GY P+I+  L 
Sbjct: 617 NKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIENLDKLSMEMKKLGYFPEINFVLQ 676

Query: 641 DLEDEEKREVILWHSEKLALCYGLISS 667
           D+E+++K +++  HSEKLA+ +GL+++
Sbjct: 677 DVEEQDKEQILCGHSEKLAVVFGLLNT 703


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/607 (36%), Positives = 347/607 (57%), Gaps = 33/607 (5%)

Query: 117 RF-SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           RF  +   + A      L EG QVH       +    F+ T LV MY  CG + DAR + 
Sbjct: 41  RFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVL 100

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           D+M  R +V W+ MI GY Q     E L+LF +M  +   P+E  L+ +L++CS   ++ 
Sbjct: 101 DRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIY 160

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G+ VH  ++  N      + S+L+ MYA                               
Sbjct: 161 QGKQVHSLLVKTNFESHMFVGSSLLDMYA------------------------------- 189

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           ++  +++AR +FD + E+D++  +A+ISGYA+    +EAL LF ++   GM+ + VT  +
Sbjct: 190 KSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTT 249

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           +++A + L  LD  +++H  I +      + + N++IDMY+KCG L  +R VF+ M  R+
Sbjct: 250 LVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERS 309

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V+SW +M+  +  HG     +  F  +  E + P+ VT + VL  CSH GLVDEG +IF 
Sbjct: 310 VVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFD 368

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           ++  E +      HYGC++DL GR+  L +AL L+E MPF     IWGSL+ ACRVH  +
Sbjct: 369 TVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANV 428

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
            + E  A++LL+++P++ G  V+LSNIYA    W+DV ++RK M E+ + KE   S I +
Sbjct: 429 HVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIIL 488

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
           +  ++ F +++R H     I  K+ E+  ++K AG+VPD+   L D++DE+K  ++L HS
Sbjct: 489 DKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHS 548

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ +GL+++     IR++KNLR+C DCHNF K VSKVY REI +RD+ RFH    G 
Sbjct: 549 EKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGN 608

Query: 716 CSCKDYW 722
           C+C DYW
Sbjct: 609 CTCGDYW 615



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 198/420 (47%), Gaps = 46/420 (10%)

Query: 18  AISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIF 74
           AI++C    +L   +Q HA+++    + +     L   L+T +        +L  A ++ 
Sbjct: 48  AITACIERRALWEGRQVHARMIT---ARYRPAVFLGTRLVTMY----VRCGALDDARNVL 100

Query: 75  SQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL 134
            ++P          I   S + R   AL +F+KML  G   + ++   +L + +  + + 
Sbjct: 101 DRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIY 160

Query: 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
           +G QVH L  K  F S  FV + L+ MY     I +AR +FD +  RD+V  + +I GY 
Sbjct: 161 QGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYA 220

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           Q GL +E L+LF ++    ++ + +  + +++A S   +L YG+ VH  I+   +     
Sbjct: 221 QKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVA 280

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           LQ++LI MY+ CG +  ++ +FD +L +++V   AM+ GY R G                
Sbjct: 281 LQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGL--------------- 325

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
                             E + LF ++    +KPD VT+L+V+S C+H G++D+   I  
Sbjct: 326 ----------------GHEVISLFKDLHK-EVKPDSVTLLAVLSGCSHGGLVDEGLDIFD 368

Query: 375 YIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIHGD 431
            + K      L   +   IID+  + G LE A  + E M   +  S W S++ A  +H +
Sbjct: 369 TVVKEQ-SALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHAN 427


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/572 (38%), Positives = 342/572 (59%), Gaps = 8/572 (1%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D      L+  Y   GK+ +AR +FD+M  RD+V W++M+ GY + G   E   LF+   
Sbjct: 67  DVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP 126

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
           + +V       + ++S  ++ G L     V + + + N    A   + ++  Y     MD
Sbjct: 127 VRDV----FTWTAVVSGYAQNGMLEEARRVFDAMPERN----AVSWNAMVAAYIQRRMMD 178

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            AK LF+ +  +N+     M++GY++AG +E+A+ +FD M +KD + W+AM++ Y++   
Sbjct: 179 EAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGC 238

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
            +E L+LF EM  CG   ++     V+S CA +  L+   ++H  + +  +G    V NA
Sbjct: 239 SEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNA 298

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           ++ MY KCG++E AR  FE M  R+V+SW +MI  +A HG  + AL  F+ M+  S  P+
Sbjct: 299 LLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPD 358

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
            +T +GVL ACSH+GLV++G   F SM +++ +  K EHY CM+DL GRA  L EA +L+
Sbjct: 359 DITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLM 418

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
           + MPF P+  +WG+L+ A R+H   EL   AA+++ +L+P++ G  VLLSNIYA   +W+
Sbjct: 419 KDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWR 478

Query: 571 DVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAG 630
           D  ++R  M+ERG+ K    S IE+ N+V+ F   D  H + ++IY  L ++   +K AG
Sbjct: 479 DARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAG 538

Query: 631 YVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIK 690
           YV      L D+E+EEK  ++ +HSEKLA+ YG+++      IR++KNLRVC DCHN  K
Sbjct: 539 YVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFK 598

Query: 691 LVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            +S +  R I++RD  RFHH++ G CSC DYW
Sbjct: 599 YISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 173/362 (47%), Gaps = 30/362 (8%)

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           M  RD V ++VMI  +  +GL     + F+       E D +  + +L+A  R G +   
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAP----EKDAVSWNGMLAAYVRNGRVEEA 56

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
                 + ++    D    + L++ Y   G M  A+ LFD++  +++V    MVSGY+R 
Sbjct: 57  RG----LFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARR 112

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           G + +AR +FD    +D+  W+A++SGYA+N   +EA ++F+ M     + + V+  +++
Sbjct: 113 GDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP----ERNAVSWNAMV 168

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
           +A     ++D+A+ +   +       ++   N ++  YA+ G LE A+ VF+ M +++ +
Sbjct: 169 AAYIQRRMMDEAKELFNMMPCR----NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAV 224

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
           SW +M+ A++  G +   L  F +M       N   F  VL  C+    ++ G ++   +
Sbjct: 225 SWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRL 284

Query: 478 TNE-YNIPPKYEHYGCMVD-----LFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
               Y +       GC V      ++ +   + +A    E M    +VV W +++A    
Sbjct: 285 IRAGYGV-------GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYAR 336

Query: 532 HG 533
           HG
Sbjct: 337 HG 338



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 4/176 (2%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++F  +P   +      + A S     +  L++F++M   G  ++R +F  +L   A 
Sbjct: 211 AKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCAD 270

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  GMQ+HG   + G+G   FV   L+ MY  CG + DAR  F++M  RD+V W+ M
Sbjct: 271 IAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTM 330

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG----NLSYGEAVH 241
           I GY ++G   E L +F+ M+ ++ +PD++ L  +L+ACS +G     +SY  ++H
Sbjct: 331 IAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMH 386


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/600 (37%), Positives = 355/600 (59%), Gaps = 31/600 (5%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +L++ AR    +EGM  H    ++G  +D      L+ MY  CG +  AR +FD+M  R 
Sbjct: 26  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 85

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +V W+ M+  + QNG  ++ L LF +M+       E  +S ++ AC+    +   + +H 
Sbjct: 86  LVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHG 145

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           F +    ALD+                             N+ V TA++  Y++ G V+D
Sbjct: 146 FAL--KTALDS-----------------------------NVFVGTALLDVYAKCGLVKD 174

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           A L+F+ M E+  + WS+M++GY +N   +EAL LF+  Q  G++ ++ T+ S +SACA 
Sbjct: 175 ANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAA 234

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
              L + +++     K   G ++ V +++IDMYAKCG +E A  VF  +  +NV+ W ++
Sbjct: 235 RAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAI 294

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           ++ F+ H  +  A+I+F KM+   I PN +T+I VL ACSH GLV++GR+ F  M   +N
Sbjct: 295 LSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHN 354

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           + P   HY CMVD+ GRA LL EA + ++ MPF     +WGSL+A+CR++  +ELAE AA
Sbjct: 355 VSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAA 414

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           K L +++P + G  VLLSNIYA + RW++V   R  +KE    KER  S IE+ ++V+ F
Sbjct: 415 KHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSF 474

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
           +  +R+H +  +IY KL +++ E+K  GY       L D+E+  K+E++  HSEKLAL +
Sbjct: 475 MVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTF 534

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           G++     + IRI+KNLR+C DCH+F+KL S +  REI++RD  RFHH+K+G CSC ++W
Sbjct: 535 GIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 594



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 192/400 (48%), Gaps = 40/400 (10%)

Query: 32  HAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRA 91
           HAQI+++       +++   +L+  +S      S    A  +F ++P       N  + +
Sbjct: 43  HAQIIRVGLR---ADTITSNMLMNMYSKCGLVES----ARKLFDEMPVRSLVSWNTMVGS 95

Query: 92  ISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSD 151
            + +   + AL +F++M  EG +   F+   ++ A A    + E  Q+HG   K    S+
Sbjct: 96  HTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSN 155

Query: 152 PFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
            FV T L+ +Y  CG + DA L+F+ M  R  V WS M+ GY QN L++E L LF   + 
Sbjct: 156 VFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQA 215

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
             +E ++  +S  LSAC+    L  G+ V        +  +  + S+LI MYA CG ++ 
Sbjct: 216 MGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEE 275

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
           A  +F  V  KN+V+  A++SG+SR                               +   
Sbjct: 276 AYTVFSSVEEKNVVLWNAILSGFSR-------------------------------HVRS 304

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNA 390
            EA+  F +MQ  G+ P+ +T +SV+SAC+HLG++++ ++   L I  +    ++   + 
Sbjct: 305 LEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSC 364

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIH 429
           ++D+  + G L  A++  +RM      S W S++ +  I+
Sbjct: 365 MVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIY 404



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 149/312 (47%), Gaps = 33/312 (10%)

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           L  +L + +R      G A H  II   +  D    + L+ MY+ CG ++ A+ LFD++ 
Sbjct: 23  LQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMP 82

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
           +++LV    MV  +++ G  E                               +AL LF +
Sbjct: 83  VRSLVSWNTMVGSHTQNGDCE-------------------------------KALVLFMQ 111

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQ  G    + T+ SV+ ACA    + + +++H +  K A   ++ V  A++D+YAKCG 
Sbjct: 112 MQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGL 171

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           ++ A  VFE M  R+ ++W+SM+  +  +     AL+ F++ +   ++ N  T    L A
Sbjct: 172 VKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSA 231

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           C+    + EG+++ A ++ +  I         ++D++ +  ++ EA  +  ++    NVV
Sbjct: 232 CAARAALIEGKQVQA-VSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVE-EKNVV 289

Query: 521 IWGSLMAACRVH 532
           +W ++++    H
Sbjct: 290 LWNAILSGFSRH 301


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/721 (32%), Positives = 382/721 (52%), Gaps = 43/721 (5%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL--PTTTP 64
           P +P      + I +  S     Q HA  L+L         L+   + TS SL       
Sbjct: 65  PFRPDGFTFPSLIRAAPSNASAAQLHACALRLG--------LVRPSVFTSGSLVHAYLRF 116

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
             +  A  +F ++        N  +  +  + R   A+ +F +M+ EG+  D  +   +L
Sbjct: 117 GRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVL 176

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
                    +  + +H    K G   + FV   L+ +YG  G + +A+ +F  M  RD+V
Sbjct: 177 PMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLV 236

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ +I G  Q G     L +F+ M+ S V PD + L  + SA ++ G+    +++H ++
Sbjct: 237 TWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYV 296

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           +     +D                              +++   A+V  Y++   +E A+
Sbjct: 297 MRRGWDVD------------------------------DIIAGNAIVDMYAKLSNIEAAQ 326

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC-GMKPDKVTMLSVISACAHL 363
            +FD M  +D + W+ +I+GY +N    EA++ +  MQ   G+K  + T +SV+ A +HL
Sbjct: 327 RMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHL 386

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
           G L Q  R+H    K     D+ V   +ID+YAKCG L  A  +FE+M RR+   W ++I
Sbjct: 387 GALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAII 446

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
           +   +HG    AL  F++M+ E I P+ VTF+ +L ACSHAGLVD+GR  F  M   Y+I
Sbjct: 447 SGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDI 506

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
            P  +HY CM D+ GRA  L EA   ++ MP  P+  +WG+L+ ACR+HG +E+ + A++
Sbjct: 507 VPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQ 566

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
            L +LDP++ G  VL+SN+YAK  +W  V E+R  ++ + + K    S IE+   V  F 
Sbjct: 567 NLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFY 626

Query: 604 TADRS--HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           + +++  H Q ++I  +L  ++++++  GYV D    L D+ED+EK  ++  HSE+LA+ 
Sbjct: 627 SGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERLAIA 686

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           +G+I++   + + I KNLRVC DCHN  K +S++  REI++RD  RFHH+KDG CSC D+
Sbjct: 687 FGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCSCGDF 746

Query: 722 W 722
           W
Sbjct: 747 W 747



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/483 (27%), Positives = 228/483 (47%), Gaps = 43/483 (8%)

Query: 85  SNKFIRAISWSHRPKHALKVFLKMLNEGLTI--DRFSFPPILKAIARAEGLLEGMQVHGL 142
           +N  I A S +  P+ A  +   +L+       D F+FP +++A   A       Q+H  
Sbjct: 36  NNTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRA---APSNASAAQLHAC 92

Query: 143 GTKLGFGSDPFVQTG-LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201
             +LG        +G LV  Y   G+I +A  +FD+MS RD+  W+ M+ G  +N    E
Sbjct: 93  ALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAE 152

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
            + LF  M    V  D + +S +L  C   G+      +H + + +              
Sbjct: 153 AVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHG------------- 199

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
                             L K L V  A++  Y + G +E+A+ +F  M  +DL+ W+++
Sbjct: 200 ------------------LDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSI 241

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF 381
           ISG  +      ALK+F  M+  G+ PD +T++S+ SA A  G    A+ +H Y+ +  +
Sbjct: 242 ISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGW 301

Query: 382 G-GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
              D+   NAI+DMYAK  ++E+A+ +F+ M  ++ +SW ++I  +  +G A  A+  + 
Sbjct: 302 DVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYG 361

Query: 441 KM-KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499
            M K E +     TF+ VL A SH G + +G  + A ++ +  +        C++DL+ +
Sbjct: 362 HMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHA-LSIKIGLNVDVYVGTCLIDLYAK 420

Query: 500 ANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI--ELAEFAAKQLLQLDPDHDGALV 557
              L EA+ L E MP   +   W ++++   VHG     L  F+  Q   + PDH   + 
Sbjct: 421 CGKLAEAMLLFEKMP-RRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVS 479

Query: 558 LLS 560
           LL+
Sbjct: 480 LLA 482


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/612 (36%), Positives = 360/612 (58%), Gaps = 10/612 (1%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           + +C S+  +KQ  +QI ++           L       SL      +L YA  IF+ + 
Sbjct: 104 LRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSL-----GNLRYAEKIFNYVQ 158

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P   V N  ++  +     +  L +F ++  +GL  D F++P +LKAI     + +G +
Sbjct: 159 DPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEK 218

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           V G   K G   D +V   L+ MY     + +A+ +FD+M+ RD V W+VMI GY +   
Sbjct: 219 VRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRR 278

Query: 199 FDEVLNLFEEMKM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
           F++ +N F EM+   N +PDE  +   LSAC+   NL  G+ +H ++    +     + +
Sbjct: 279 FEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYV-RKELGFTTRIDN 337

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
            L+ MYA CGC+++A+ +FD++ +KN++  T+M+SGY   G + +AR +FD+   +D++ 
Sbjct: 338 ALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVL 397

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W+AMI+GY + +H  +A+ LF EMQ+  +KPDK T++++++ CA LG L+Q + IH Y+D
Sbjct: 398 WTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLD 457

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           +N    D+ V  A+I+MY+KCG ++ + E+F  +  ++  SWTS+I   A++G    AL 
Sbjct: 458 ENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALR 517

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F++M+     P+ +TFIGVL ACSH GLV+EGR  F SM   + I PK EHYGC++DL 
Sbjct: 518 LFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLL 577

Query: 498 GRANLLREALELVETMPFAPN---VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           GRA LL EA EL++ +P       V ++G+L++ACR+H  +++ E  AK+L  ++     
Sbjct: 578 GRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSS 637

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
              LL+NIYA   RW+D  ++R+ MKE G+ K   CS IE++  V+EFL  D SH +  +
Sbjct: 638 IHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMIE 697

Query: 615 IYEKLNEVISEL 626
           I   LN V  +L
Sbjct: 698 ICSMLNRVTGQL 709


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/716 (32%), Positives = 398/716 (55%), Gaps = 40/716 (5%)

Query: 9   KPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLK-LLLTSFSLPTTTPSSL 67
           +P  +  +T + +C+S+  +++  A   ++S +   +  ++L+  LLT ++       SL
Sbjct: 118 QPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYA----KCGSL 173

Query: 68  YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
             A  +F ++        N  I A + S   + A++++  M  E       +F  +L A 
Sbjct: 174 EDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSV---RTFTSVLSAC 230

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
           +    L +G ++H L +  G   D  +Q  L+ MY  C  + DA  +F ++  RD+V WS
Sbjct: 231 SNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWS 290

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
            MI  + +  LFDE +  + +M++  V P+    + +L AC+  G+L  G AVH+ I+ N
Sbjct: 291 AMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGN 350

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
              +                                LV  TA+V  Y+  G +++AR +F
Sbjct: 351 GYKI-------------------------------TLVNGTALVDLYTSYGSLDEARSLF 379

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP-DKVTMLSVISACAHLGVL 366
           DQ+  +D   W+ +I GY++  H    L+L+ EM+     P  K+    VISACA LG  
Sbjct: 380 DQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAF 439

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
             A++ H  I+ +    D  +  ++++MY++ G+LESAR+VF++M  R+ ++WT++I  +
Sbjct: 440 ADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGY 499

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           A HG+   AL  + +M+ E  +P+ +TF+ VLYACSHAGL ++G+++F S+ ++Y + P 
Sbjct: 500 AKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPN 559

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
             HY C++DL  RA  L +A EL+  MP  PN V W SL+ A R+H +++ A  AA Q+ 
Sbjct: 560 IAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQIT 619

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           +LDP    + VLLSN++A       +  +R +M  RG+ K R  S IE+ ++++EF   D
Sbjct: 620 KLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGD 679

Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS 666
            SH +  +I+ +L  +  ++K AGYVP+    L D+ ++EK  ++  HSEKLA+ +GLI+
Sbjct: 680 NSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIA 739

Query: 667 SKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +   + +RI   LR+C DCH+ +K +S +  REI++RD +RFH ++DG CSC DYW
Sbjct: 740 TAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 197/366 (53%), Gaps = 41/366 (11%)

Query: 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
           ++ F+   +V  YG CG +  AR  FD ++ ++   W  M+  Y QNG +   L+L++ M
Sbjct: 56  ANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM 115

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN-NVALDAHLQSTLITMYANCGC 268
              +++P+ +V + +L AC+    L  G+A+H  I     + LD  L+++L+TMYA CG 
Sbjct: 116 ---DLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGS 172

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           ++ AK LF+++  +++    AM++ Y+++G                              
Sbjct: 173 LEDAKRLFERMSGRSVSSWNAMIAAYAQSG------------------------------ 202

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
            H +EA++L+ +M V   +P   T  SV+SAC++LG+LDQ ++IH  I       DL + 
Sbjct: 203 -HFEEAIRLYEDMDV---EPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQ 258

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           NA++ MYA+C  L+ A ++F+R+ RR+V+SW++MI AFA       A+ F++KM+ E + 
Sbjct: 259 NALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVR 318

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFAS-MTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
           PN  TF  VL AC+  G +  GR +    + N Y I     +   +VDL+     L EA 
Sbjct: 319 PNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKIT--LVNGTALVDLYTSYGSLDEAR 376

Query: 508 ELVETM 513
            L + +
Sbjct: 377 SLFDQI 382



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 139/250 (55%), Gaps = 15/250 (6%)

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           N+ +   +V  Y + G V  AR  FD +  K+   W +M++ YA+N H + AL L+  M 
Sbjct: 57  NVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD 116

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID-KNAFGGDLRVNNAIIDMYAKCGSL 401
              ++P+ V   +V+ ACA +  L++ + IH  I        D+ + N+++ MYAKCGSL
Sbjct: 117 ---LQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSL 173

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
           E A+ +FERM  R+V SW +MI A+A  G    A+  +  M    ++P+  TF  VL AC
Sbjct: 174 EDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSAC 230

Query: 462 SHAGLVDEGREIFA---SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
           S+ GL+D+GR+I A   S   E ++  +      ++ ++ R   L +A ++ + +P   +
Sbjct: 231 SNLGLLDQGRKIHALISSRGTELDLSLQ----NALLTMYARCKCLDDAAKIFQRLP-RRD 285

Query: 519 VVIWGSLMAA 528
           VV W +++AA
Sbjct: 286 VVSWSAMIAA 295



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 5/173 (2%)

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L+  ++IH  I   A   ++ + N I+  Y KCGS+ SAR  F+ + R+N  SW SM+ A
Sbjct: 40  LESVRQIHDRI-SGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTA 98

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
           +A +G  R AL  + +M    + PN V +  VL AC+    ++EG+ I + ++    +  
Sbjct: 99  YAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKL 155

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
                  ++ ++ +   L +A  L E M    +V  W +++AA    G  E A
Sbjct: 156 DVILENSLLTMYAKCGSLEDAKRLFERMS-GRSVSSWNAMIAAYAQSGHFEEA 207


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/577 (38%), Positives = 340/577 (58%), Gaps = 37/577 (6%)

Query: 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ-NGLFDEVLNL 205
           G G   FV   LV MY   G + DA  +FD+M  R++V W+ ++      +G  +E L  
Sbjct: 110 GAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRF 169

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
              M    V P+    S +L AC   G L+   A+H   +   V LD+            
Sbjct: 170 LVAMWRDGVAPNAYTFSSVLGACGTPGVLA---ALHASTV--KVGLDS------------ 212

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
                            ++ V ++++  Y + G ++  R +FD+MV +DL+ W+++I+G+
Sbjct: 213 -----------------DVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGF 255

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385
           A++     A++LF  M+  G   ++ T+ SV+ AC  + +L+  +++H ++ K  +  DL
Sbjct: 256 AQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YERDL 313

Query: 386 RVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDE 445
            ++NA++DMY KCGSLE A  +F RM +R+VISW++MI+  A +G +  AL  F+ MK E
Sbjct: 314 ILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSE 373

Query: 446 SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505
            + PN +T +GVL+ACSHAGLV++G   F SM   + I P+ EH+ CMVDL GRA  L E
Sbjct: 374 GVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDE 433

Query: 506 ALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565
           A+E +  M   P+ VIW +L+ ACR+H    LA +AA+++L+L+PD  GA VLLSN YA 
Sbjct: 434 AVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARVLLSNTYAD 493

Query: 566 DKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISE 625
            ++W D  +  K+M++RG+ KE   S IE+   V+ F+  D SH  +D I ++LN +I  
Sbjct: 494 LRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTIVQELNRLIGR 553

Query: 626 LKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDC 685
           +   GYVP     L DL  E+K +++ +HSEK+A+ +G + +     IRI+KNLR+C DC
Sbjct: 554 ISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIAFGTMHAVGGKPIRIMKNLRICGDC 613

Query: 686 HNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           H F KLVSK   R I+IRD  RFHH++DG CSC DYW
Sbjct: 614 HAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/689 (35%), Positives = 376/689 (54%), Gaps = 48/689 (6%)

Query: 66   SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
            +L  A  +F +IP          I   +        L +F KM ++G+  ++F+   +LK
Sbjct: 336  NLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLK 395

Query: 126  AIA-RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            + +        G  +HG   + G   D  +   ++  Y  C     A  +F  M+ +D V
Sbjct: 396  SCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTV 455

Query: 185  PWSVMIDGYFQNGLFDEVLNLFEEM-----------------------------KMSNVE 215
             W++M+  Y Q G   + ++LF ++                             KM    
Sbjct: 456  SWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAG 515

Query: 216  P--DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
            P  +++  S  L   S    L  G+ +H  ++   V  D  ++++LI MY  CG M+ A 
Sbjct: 516  PAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKAS 575

Query: 274  GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
                 V+ K+L   ++M++               D +VE   + WS+M+SGY +N   ++
Sbjct: 576  -----VIFKHLPQESSMMNSEESCD---------DAVVES--VSWSSMVSGYVQNGRFED 619

Query: 334  ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
            ALK F+ M    ++ DK T+ SV+SACA  GVL+  +++H YI K   G D+ + ++IID
Sbjct: 620  ALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIID 679

Query: 394  MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
            MY KCGSL  A  +F + + RNV+ WTSMI+  A+HG  R A+  F  M +E I PN V+
Sbjct: 680  MYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVS 739

Query: 454  FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
            F+GVL ACSHAGL++EG + F  M   Y I P  EH+ CMVDL+GRA  L E  E +   
Sbjct: 740  FVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNN 799

Query: 514  PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573
              +    +W S +++CRVH  IE+  +  K+LL+L+P   G  +L S+I A + RW++  
Sbjct: 800  AISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAA 859

Query: 574  ELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVP 633
            ++R  M++RG+ K  + S I++ N+V+ F+  DRSH Q  +IY  L+E+I  LK  GY  
Sbjct: 860  KIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYST 919

Query: 634  DIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVS 693
            D+   + D+E E+++ ++ +HSEKLA+ YG+IS+   + IR++KNLRVC DCHNFIK  S
Sbjct: 920  DVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYAS 979

Query: 694  KVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            ++  REI+IRD  RFHH+K G CSC DYW
Sbjct: 980  ELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 201/395 (50%), Gaps = 22/395 (5%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+ +Y     +  A  MF+++   D+  W+V+I G+ + GL  +VL LF +M+   V P+
Sbjct: 327 LLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPN 386

Query: 218 EMVLSKILSACSRAGNLS-YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           +  LS +L +CS   N S  G+ +H +I+ N + LDA L ++++  Y  C C   A+ LF
Sbjct: 387 QFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLF 446

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
             +  K+ V    M+S Y + G ++ +  +F Q+  KD   W+ MI G   N   + AL+
Sbjct: 447 GLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALE 506

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           L  +M   G   +K+T    +   + L VL   ++IH  + K     D  V N++IDMY 
Sbjct: 507 LLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYC 566

Query: 397 KCGSLESAREVFERMRRRN---------------VISWTSMINAFAIHGDARNALIFFNK 441
           KCG +E A  +F+ + + +                +SW+SM++ +  +G   +AL  F+ 
Sbjct: 567 KCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSF 626

Query: 442 MKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY--GCMVDLFGR 499
           M    ++ +  T   V+ AC+ AG+++ GR++   +     I    + +    ++D++ +
Sbjct: 627 MICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQ---KIGHGLDVFLGSSIIDMYVK 683

Query: 500 ANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
              L +A  L+       NVV+W S+++ C +HG+
Sbjct: 684 CGSLNDAW-LIFNQAKDRNVVLWTSMISGCALHGQ 717



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 113/235 (48%), Gaps = 26/235 (11%)

Query: 20  SSCSSLTHMKQTHAQILKLS--HSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI 77
           SS S L   KQ H Q+LK+        +NSL+                 +  A  IF  +
Sbjct: 531 SSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMY---------CKCGEMEKASVIFKHL 581

Query: 78  PAPPSRVSNK------FIRAISWSH---------RPKHALKVFLKMLNEGLTIDRFSFPP 122
           P   S ++++       + ++SWS          R + ALK F  M+   + +D+F+   
Sbjct: 582 PQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTS 641

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           ++ A A A  L  G QVHG   K+G G D F+ + ++ MY  CG + DA L+F++   R+
Sbjct: 642 VVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRN 701

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           +V W+ MI G   +G   E + LFE M    + P+E+    +L+ACS AG L  G
Sbjct: 702 VVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEG 756



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%)

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
            N ++++YAK  +LE A ++FE + + +V SWT +I+ FA  G + + L  F KM+D+ +
Sbjct: 324 GNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGV 383

Query: 448 DPNGVTFIGVLYACS 462
            PN  T   VL +CS
Sbjct: 384 CPNQFTLSIVLKSCS 398


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/580 (39%), Positives = 346/580 (59%), Gaps = 8/580 (1%)

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
           T    L  A  +F  +P P     N  +   +   R + +L+ F+KM  E   ++ +SF 
Sbjct: 92  TKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFG 151

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
             L A A    L  G QVH L +K  + +D ++ + L+ MY  CG +  A  +F  M  R
Sbjct: 152 SALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIER 211

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           ++V W+ +I  Y QNG   E L +F  M  S +EPDE+ L+ ++SAC+    L  G  +H
Sbjct: 212 NLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIH 271

Query: 242 EFIIDNN-VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
             ++  N    D  L + L+ MYA C  ++ A+ +FD++ ++N+V  T+MVSGY+RA  V
Sbjct: 272 ARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASV 331

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
           + AR +F +M +++++ W+A+I+GY +N   +EAL+LF  ++   + P   T  +++SAC
Sbjct: 332 KAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSAC 391

Query: 361 AHLGVLDQAQRIHLYIDKNAFG------GDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           A+L  L   ++ H ++ K  F        D+ V N++IDMY KCGS+E    VFE+M+ R
Sbjct: 392 ANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKER 451

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           + +SW ++I  +A +G    AL  F KM      P+ VT IGVL ACSHAGLV+EGR  F
Sbjct: 452 DCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYF 511

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
            SM  E+ + P  +HY CMVDL GRA  L EA  L+E MP  P+ V+WGSL+AAC+VHG 
Sbjct: 512 FSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGN 570

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
           IE+ + AA++LL++DP + G  VLLSN+YA+  RW DV  +RK M+++G+ K+  CS IE
Sbjct: 571 IEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIE 630

Query: 595 MNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           + + V+ FL  D+SH    QIY  L  +  ++K  GY+PD
Sbjct: 631 VESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPD 670



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 179/332 (53%), Gaps = 1/332 (0%)

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           P+    +K+L +C R+ +      VH  I+    +++  +Q+ LI +Y  C C+D A+ L
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           FD++  +N     +++S  +++G +++A  +F  M E D   W++M+SG+A+++  +E+L
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           + F +M       ++ +  S +SACA L  L+   ++H  + K+ +  D+ + +A+IDMY
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           +KCGS+  A EVF  M  RN+++W S+I  +  +G A  AL  F +M D  ++P+ VT  
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
            V+ AC+    + EG +I A +               +VD++ + + + EA  + + M  
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312

Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
             NVV   S+++       ++ A F   ++ Q
Sbjct: 313 R-NVVSETSMVSGYARAASVKAARFMFSKMTQ 343



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 185/417 (44%), Gaps = 72/417 (17%)

Query: 108 MLNEGLTIDRF-----SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162
           M   GL  D +      F  +L +  R+        VH       F  + F+Q  L+ +Y
Sbjct: 1   MAKHGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVY 60

Query: 163 GACGKILDARLMFDKMSYR-------------------------------DIVPWSVMID 191
           G C  + DAR +FD+M  R                               D   W+ M+ 
Sbjct: 61  GKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVS 120

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           G+ Q+  F+E L  F +M   +   +E      LSAC+   +L+ G  VH  +  +  + 
Sbjct: 121 GFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYST 180

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           D ++ S LI MY+ CG +  A+ +F  ++ +NLV   ++++ Y                 
Sbjct: 181 DVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYE---------------- 224

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
                          +N    EAL++F  M   G++PD+VT+ SV+SACA L  L +  +
Sbjct: 225 ---------------QNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQ 269

Query: 372 IHLYIDK-NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
           IH  + K N F  DL + NA++DMYAKC  +  AR VF+RM  RNV+S TSM++ +A   
Sbjct: 270 IHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAA 329

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
             + A   F+KM   ++    V++  ++   +  G  +E   +F  +  E   P  Y
Sbjct: 330 SVKAARFMFSKMTQRNV----VSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHY 382


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/693 (35%), Positives = 384/693 (55%), Gaps = 39/693 (5%)

Query: 31  THAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIR 90
            HA + KL H     ++ +   L+ ++S+     +    A  +F  I           + 
Sbjct: 126 VHAYVYKLGHQ---ADAFVGTALIDAYSVCGNVDA----ARQVFDGIYFKDMVSWTGMVA 178

Query: 91  AISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGS 150
             + ++  + +L +F +M   G   + F+    LK+    E    G  VHG   K+ +  
Sbjct: 179 CYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDR 238

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D +V   L+ +Y   G+I +A+  F++M   D++PWS+MI  Y Q+    E L LF  M+
Sbjct: 239 DLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMR 298

Query: 211 MSNVE-PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
            S+V  P+    + +L AC+    L+ G  +H  ++   V LD+                
Sbjct: 299 QSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVL--KVGLDS---------------- 340

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
                        N+ VS A++  Y++ G++E++  +F    EK+ + W+ +I GY +  
Sbjct: 341 -------------NVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLG 387

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389
             ++AL LF+ M    ++P +VT  SV+ A A L  L+  ++IH    K  +  D  V N
Sbjct: 388 DGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVAN 447

Query: 390 AIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449
           ++IDMYAKCG ++ AR  F++M +++ +SW ++I  ++IHG    AL  F+ M+  +  P
Sbjct: 448 SLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKP 507

Query: 450 NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
           N +TF+GVL ACS+AGL+D+GR  F SM  +Y I P  EHY CMV L GR+    EA++L
Sbjct: 508 NKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKL 567

Query: 510 VETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW 569
           +  +PF P+V++W +L+ AC +H  ++L +  A+++L+++P  D   VLLSN+YA  KRW
Sbjct: 568 IGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRW 627

Query: 570 QDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPA 629
            +V  +RK+MK++ + KE   S +E    V+ F   D SH     I+  L  +  + + A
Sbjct: 628 DNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRDA 687

Query: 630 GYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFI 689
           GYVPD    L+D+ED+EK  ++  HSE+LAL +GLI       IRI+KNLR+C DCH  I
Sbjct: 688 GYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIKNLRICVDCHAVI 747

Query: 690 KLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KLVSK+  REIVIRD  RFHH++ GVCSC DYW
Sbjct: 748 KLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/466 (27%), Positives = 235/466 (50%), Gaps = 36/466 (7%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P   +       +  S SH+ + A ++ L++  EG  +++F F  +LK +  
Sbjct: 57  ASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVS 116

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            +     + VH    KLG  +D FV T L+  Y  CG +  AR +FD + ++D+V W+ M
Sbjct: 117 MDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGM 176

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           +  Y +N   ++ L LF +M++    P+   +S  L +C+       G++VH        
Sbjct: 177 VACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVH-------- 228

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                            GC    K  +D    ++L V  A++  Y+++G++ +A+  F++
Sbjct: 229 -----------------GC--ALKVCYD----RDLYVGIALLELYTKSGEIAEAQQFFEE 265

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQ 368
           M + DLI WS MIS YA+++  +EAL+LF  M Q   + P+  T  SV+ ACA L +L+ 
Sbjct: 266 MPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNL 325

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
             +IH  + K     ++ V+NA++D+YAKCG +E++ ++F     +N ++W ++I  +  
Sbjct: 326 GNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQ 385

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA-SMTNEYNIPPKY 487
            GD   AL  F+ M    I P  VT+  VL A +    ++ GR+I + ++   YN     
Sbjct: 386 LGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVV 445

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            +   ++D++ +   + +A    + M    + V W +L+    +HG
Sbjct: 446 AN--SLIDMYAKCGRIDDARLTFDKMD-KQDEVSWNALICGYSIHG 488



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 169/407 (41%), Gaps = 88/407 (21%)

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           D    + +L    R  + + G+++H  I+ +  +LD   Q+ L+  Y + G ++ A  LF
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           D++ L N V    +  G+SR+ Q + AR +  ++  +                       
Sbjct: 62  DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFRE----------------------- 98

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
                   G + ++    +++     + + D    +H Y+ K     D  V  A+ID Y+
Sbjct: 99  --------GYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYS 150

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
            CG++++AR+VF+ +  ++++SWT M+  +A +    ++L+ F +M+     PN  T   
Sbjct: 151 VCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISA 210

Query: 457 VLYAC-----------------------------------SHAGLVDEGREIFASMTNEY 481
            L +C                                   + +G + E ++ F  M  + 
Sbjct: 211 ALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDD 270

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELV----ETMPFAPNVVIWGSLMAACRVHGEIEL 537
            IP     +  M+  + +++  +EALEL     ++    PN   + S++ AC     + L
Sbjct: 271 LIP-----WSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNL 325

Query: 538 AEFAAKQLLQLDPDHDGALVLLSN----IYAKDKRWQDVGELRKSMK 580
                  +L++  D +   V +SN    +YAK       GE+  S+K
Sbjct: 326 GNQIHSCVLKVGLDSN---VFVSNALMDVYAK------CGEIENSVK 363


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/607 (36%), Positives = 347/607 (57%), Gaps = 33/607 (5%)

Query: 117 RF-SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           RF  +   + A      L EG QVH       +    F+ T LV MY  CG + DAR + 
Sbjct: 9   RFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVL 68

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           D+M  R +V W+ MI GY Q     E L+LF +M  +   P+E  L+ +L++CS   ++ 
Sbjct: 69  DRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIY 128

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G+ VH  ++  N      + S+L+ MYA                               
Sbjct: 129 QGKQVHSLLVKTNFESHMFVGSSLLDMYA------------------------------- 157

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           ++  +++AR +FD + E+D++  +A+ISGYA+    +EAL LF ++   GM+ + VT  +
Sbjct: 158 KSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTT 217

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           +++A + L  LD  +++H  I +      + + N++IDMY+KCG L  +R VF+ M  R+
Sbjct: 218 LVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERS 277

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V+SW +M+  +  HG     +  F  +  E + P+ VT + VL  CSH GLVDEG +IF 
Sbjct: 278 VVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFD 336

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           ++  E +      HYGC++DL GR+  L +AL L+E MPF     IWGSL+ ACRVH  +
Sbjct: 337 TVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANV 396

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
            + E  A++LL+++P++ G  V+LSNIYA    W+DV ++RK M E+ + KE   S I +
Sbjct: 397 HVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIIL 456

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
           +  ++ F +++R H     I  K+ E+  ++K AG+VPD+   L D++DE+K  ++L HS
Sbjct: 457 DKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHS 516

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ +GL+++     IR++KNLR+C DCHNF K VSKVY REI +RD+ RFH    G 
Sbjct: 517 EKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGN 576

Query: 716 CSCKDYW 722
           C+C DYW
Sbjct: 577 CTCGDYW 583



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 175/365 (47%), Gaps = 36/365 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++  ++P          I   S + R   AL +F+KML  G   + ++   +L + + 
Sbjct: 64  ARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSG 123

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            + + +G QVH L  K  F S  FV + L+ MY     I +AR +FD +  RD+V  + +
Sbjct: 124 PQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAI 183

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY Q GL +E L+LF ++    ++ + +  + +++A S   +L YG+ VH  I+   +
Sbjct: 184 ISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKEL 243

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                LQ++LI MY+ CG +  ++ +FD +L +++V   AM+ GY R G           
Sbjct: 244 PFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGL---------- 293

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                                  E + LF ++    +KPD VT+L+V+S C+H G++D+ 
Sbjct: 294 ---------------------GHEVISLFKDLHK-EVKPDSVTLLAVLSGCSHGGLVDEG 331

Query: 370 QRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAF 426
             I   + K      L   +   IID+  + G LE A  + E M   +  S W S++ A 
Sbjct: 332 LDIFDTVVKEQ-SALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGAC 390

Query: 427 AIHGD 431
            +H +
Sbjct: 391 RVHAN 395


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/612 (36%), Positives = 360/612 (58%), Gaps = 10/612 (1%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           + +C S+  +KQ  +QI ++           L       SL      +L YA  IF+ + 
Sbjct: 150 LRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSL-----GNLRYAEKIFNYVQ 204

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P   V N  ++  +     +  L +F ++  +GL  D F++P +LKAI     + +G +
Sbjct: 205 DPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEK 264

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           V G   K G   D +V   L+ MY     + +A+ +FD+M+ RD V W+VMI GY +   
Sbjct: 265 VRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRR 324

Query: 199 FDEVLNLFEEMKM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
           F++ +N F EM+   N +PDE  +   LSAC+   NL  G+ +H ++    +     + +
Sbjct: 325 FEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYV-RKELGFTTRIDN 383

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
            L+ MYA CGC+++A+ +FD++ +KN++  T+M+SGY   G + +AR +FD+   +D++ 
Sbjct: 384 ALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVL 443

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W+AMI+GY + +H  +A+ LF EMQ+  +KPDK T++++++ CA LG L+Q + IH Y+D
Sbjct: 444 WTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLD 503

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           +N    D+ V  A+I+MY+KCG ++ + E+F  +  ++  SWTS+I   A++G    AL 
Sbjct: 504 ENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALR 563

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F++M+     P+ +TFIGVL ACSH GLV+EGR  F SM   + I PK EHYGC++DL 
Sbjct: 564 LFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLL 623

Query: 498 GRANLLREALELVETMPFAPN---VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           GRA LL EA EL++ +P       V ++G+L++ACR+H  +++ E  AK+L  ++     
Sbjct: 624 GRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSS 683

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
              LL+NIYA   RW+D  ++R+ MKE G+ K   CS IE++  V+EFL  D SH +  +
Sbjct: 684 IHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMME 743

Query: 615 IYEKLNEVISEL 626
           I   LN V  +L
Sbjct: 744 ICSMLNRVTGQL 755


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/592 (37%), Positives = 356/592 (60%), Gaps = 8/592 (1%)

Query: 139 VHGLGTKLGFGSDPFVQTGLVGM------YGACGKILD-ARLMFDKMSYRDIVPWSVMID 191
           +HG   +    SD FV + L+ +      +     +L  A  +F ++   ++  ++++I 
Sbjct: 31  IHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIR 90

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
            +       +    + +M  S + PD +    ++ A S    +  GE  H  I+      
Sbjct: 91  CFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQN 150

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           D +++++L+ MYANCG +  A  +F ++  +++V  T+MV+GY + G VE+AR +FD+M 
Sbjct: 151 DVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMP 210

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
            ++L  WS MI+GYA+NN  ++A+ LF  M+  G+  ++  M+SVIS+CAHLG L+  +R
Sbjct: 211 HRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGER 270

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
            + Y+ K+    +L +  A++DM+ +CG +E A  VFE +   + +SW+S+I   A+HG 
Sbjct: 271 AYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGH 330

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
           A  A+ +F++M      P  VTF  VL ACSH GLV++G EI+ +M  ++ I P+ EHYG
Sbjct: 331 AHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYG 390

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           C+VD+ GRA  L EA   +  M   PN  I G+L+ AC+++   E+AE     L+++ P+
Sbjct: 391 CIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPE 450

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF-LTADRSHK 610
           H G  VLLSNIYA   +W  +  LR  MKE+ + K    S IE++ ++ +F +  D+ H 
Sbjct: 451 HSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHP 510

Query: 611 QTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD 670
           +  +I  K  E++ +++  GY  +   A  D+++EEK   I  HSEKLA+ YG++ +K  
Sbjct: 511 EMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPG 570

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + IRIVKNLRVCEDCH   KL+S+VY RE+++RDR RFHH+++GVCSC+DYW
Sbjct: 571 TTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 207/447 (46%), Gaps = 71/447 (15%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILK---LSHSHHSQNSLLLKLLLTSF 57
           MS +   T     P    + SCSS + +K  H  +L+   +S    +   L L +  ++F
Sbjct: 1   MSNIVLNTLRFKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTF 60

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117
           + PT     L YA  IFSQI  P   V N  IR  S    P  A   + +ML   +  D 
Sbjct: 61  NKPTNL---LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDN 117

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
            +FP ++KA +  E +L G Q H    + GF +D +V+  LV MY  CG I  A  +F +
Sbjct: 118 ITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQ 177

Query: 178 MSYRDIV-------------------------------PWSVMIDGYFQNGLFDEVLNLF 206
           M +RD+V                                WS+MI+GY +N  F++ ++LF
Sbjct: 178 MGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 237

Query: 207 EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
           E MK   V  +E V+  ++S+C+  G L +GE  +E+++ +++ ++  L + L+ M+  C
Sbjct: 238 EFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRC 297

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
                                          G +E A  +F+ + E D + WS++I G A
Sbjct: 298 -------------------------------GDIEKAIHVFEGLPETDSLSWSSIIKGLA 326

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
            + H  +A+  F++M   G  P  VT  +V+SAC+H G++++   I+  + K+  G + R
Sbjct: 327 VHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKD-HGIEPR 385

Query: 387 VNN--AIIDMYAKCGSLESAREVFERM 411
           + +   I+DM  + G L  A     +M
Sbjct: 386 LEHYGCIVDMLGRAGKLAEAENFILKM 412


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/656 (33%), Positives = 366/656 (55%), Gaps = 33/656 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P       N  +  +  + R   A+ +  +M+ EG+  D  +   +L     
Sbjct: 121 AYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVV 180

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
                  + +H    K G   + FV   L+ +YG  G + +A  +F  M+ RD+V W+ +
Sbjct: 181 LGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSI 240

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I    Q G     + LF  M  S V PD + L  + SA ++ G+    ++VH        
Sbjct: 241 ISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVH-------- 292

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                             C    +G +D   + +++   AMV  Y++  +++ A+ +FD 
Sbjct: 293 ------------------CYVRRRG-WD---VGDIIAGNAMVDMYAKMSKIDAAQKVFDN 330

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC-GMKPDKVTMLSVISACAHLGVLDQ 368
           + ++D++ W+ +I+GY +N    EA++++N+M    G+KP + T +SV+ A ++LG L Q
Sbjct: 331 LPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQ 390

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
             R+H    K     D+ V   +ID+YAKCG L  A  +FE M RR+   W ++I    +
Sbjct: 391 GMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGV 450

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG    AL  F++M+ E I P+ VTF+ +L ACSHAGLVD+GR  F  M   Y I P  +
Sbjct: 451 HGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAK 510

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HY CMVD+ GRA  L EA E +++MP  P+  +WG+L+ ACR+HG +E+ + A++ L +L
Sbjct: 511 HYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFEL 570

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           DP++ G  VL+SN+YAK  +W  V  +R  ++ + + K    S +E+   V  F +  ++
Sbjct: 571 DPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQT 630

Query: 609 --HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS 666
             H Q ++I   L+++++++K AGYVPD    L D+E++EK +++  HSE+LA+ +G+I+
Sbjct: 631 EPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIIN 690

Query: 667 SKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +   + + I KNLRVC DCH+  K +SK+  REI++RD  RFHH+KDG CSC D+W
Sbjct: 691 TPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGDFW 746



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 126/250 (50%), Gaps = 1/250 (0%)

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +L  N+  S ++V  Y R G+V +A  +FD+M E+D+  W+AM+SG   N    +A+ L 
Sbjct: 97  LLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLL 156

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
             M   G+  D VT+ SV+  C  LG    A  +H+Y  K+   G+L V NA+ID+Y K 
Sbjct: 157 GRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKL 216

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G L  A  VF  M  R++++W S+I+A    G    A+  F+ M +  + P+ +T + + 
Sbjct: 217 GMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLA 276

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            A +  G     + +   +               MVD++ + + +  A ++ + +P   +
Sbjct: 277 SAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLP-DRD 335

Query: 519 VVIWGSLMAA 528
           VV W +L+  
Sbjct: 336 VVSWNTLITG 345



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 152/365 (41%), Gaps = 75/365 (20%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLN-EGLTIDRFSFPPI 123
           S +  A  +F  +P       N  I     +     A++++  M N EGL   + +F  +
Sbjct: 319 SKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSV 378

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L A +   GL +GM++H L  K G   D +V T L+ +Y  CGK+++A  +F+ M  R  
Sbjct: 379 LPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRST 438

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
            PW+ +I G   +G   + L+LF +M+   ++PD +    +L+ACS AG +  G +  + 
Sbjct: 439 GPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDL 498

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
                          + T+Y   G + +AK              T MV    RAGQ+++A
Sbjct: 499 ---------------MQTVY---GIVPIAKHY------------TCMVDMLGRAGQLDEA 528

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
                                             F  +Q   +KPD     +++ AC   
Sbjct: 529 ----------------------------------FEFIQSMPIKPDSAVWGALLGACRIH 554

Query: 364 GVLDQ---AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV---I 417
           G ++    A +    +D    G  + ++N    MYAK G  +    V   +RR+N+    
Sbjct: 555 GNVEMGKVASQNLFELDPENVGYYVLMSN----MYAKIGKWDGVDAVRSLVRRQNLQKTP 610

Query: 418 SWTSM 422
            W+SM
Sbjct: 611 GWSSM 615


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/651 (36%), Positives = 369/651 (56%), Gaps = 41/651 (6%)

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
           P   +  +NK I+++        AL++     N      + ++  ++ +      LL+  
Sbjct: 35  PTASTADNNKLIQSLCKQGNLTQALELLSLEPNPA----QHTYELLILSCTHQNSLLDAQ 90

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           +VH    + GF  DPF+ T L+ MY     I +AR +FDK   R I  ++ +       G
Sbjct: 91  RVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAG 150

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA----GNLSYGEAVHEFIIDNNVALDA 253
             +EVLN++  M    +  D    + +L AC  +      L+ G  +H  I+ +      
Sbjct: 151 HGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYV 210

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
           H+ +TL+ MYA  GC                               V +A  +F+QM  K
Sbjct: 211 HIMTTLVDMYAKFGC-------------------------------VSNASCVFNQMPVK 239

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEM--QVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           +++ WSAMI+ YA+N    EAL+LF E+  +   + P+ VTM+SV+ ACA L  L+Q + 
Sbjct: 240 NVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRL 299

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           IH YI +      L V +A++ MYA+CG LE  + VF++M +R+V+SW S+I+++ +HG 
Sbjct: 300 IHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGF 359

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
            + A+  F +M    ++P+ ++F+ VL ACSHAGLVDEG+ +F SM   + I P  EHY 
Sbjct: 360 GKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYA 419

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           CMVDL GRAN L EA +++E M   P   +WGSL+ +CR+H  +ELAE A+ +L  L+P 
Sbjct: 420 CMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPT 479

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
           + G  VLL++IYA+   W  V  ++K ++ RG+ K    S IE+  ++Y F++ D  + +
Sbjct: 480 NAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPR 539

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS 671
            +Q++  L ++  ELK  GYVP     L DL+  EK  ++L HSEKLA+ +GLI+S K  
Sbjct: 540 MEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAAEKERIVLGHSEKLAVAFGLINSSKGE 599

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            IRI K+LR+CEDCH+F K +SK   +EI++RD  RFHH++DGVCSC DYW
Sbjct: 600 VIRITKSLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRDGVCSCGDYW 650



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 110/440 (25%), Positives = 207/440 (47%), Gaps = 49/440 (11%)

Query: 1   MSTLSQPTKPLTLPTSTAISSCS---SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSF 57
           +  LS    P        I SC+   SL   ++ H  +L+   +   Q+  L   L+  +
Sbjct: 59  LELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLE---NGFDQDPFLATKLINMY 115

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117
           S       S+  A  +F +       V N   RA+S +   +  L ++ +M + G+  DR
Sbjct: 116 SFF----DSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDR 171

Query: 118 FSFPPILKAIARAEGLL----EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
           F++  +LKA   +E  +    +G ++H    + G+     + T LV MY   G + +A  
Sbjct: 172 FTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASC 231

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE--PDEMVLSKILSACSRA 231
           +F++M  +++V WS MI  Y +NG   E L LF E+ +   +  P+ + +  +L AC+  
Sbjct: 232 VFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAAL 291

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
             L  G  +H +I                          + KGL D +L     V +A+V
Sbjct: 292 AALEQGRLIHGYI--------------------------LRKGL-DSIL----PVISALV 320

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
           + Y+R G++E  + +FDQM ++D++ W+++IS Y  +   ++A+ +F EM   G++P  +
Sbjct: 321 TMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPI 380

Query: 352 TMLSVISACAHLGVLDQAQRIHLYID-KNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           + +SV+ AC+H G++D+ + +   +   +     +     ++D+  +   LE A ++ E 
Sbjct: 381 SFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIEN 440

Query: 411 MR-RRNVISWTSMINAFAIH 429
           MR       W S++ +  IH
Sbjct: 441 MRIEPGPKVWGSLLGSCRIH 460


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/603 (36%), Positives = 341/603 (56%), Gaps = 32/603 (5%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +   + A A+++ L +  ++HG      F  D F+   L+ +Y  CG +++A  +FDKM 
Sbjct: 54  YHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMR 113

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            +D+V W+ +I GY QN +  E + L   M     +P+    + +L A     +   G  
Sbjct: 114 KKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQ 173

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H   +  +   D ++ S L+ MYA                               R G+
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYA-------------------------------RCGK 202

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           ++ A  +FD++  K+ + W+A+ISG+A     + AL +F EMQ  G +    T  S+ S 
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSG 262

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
            A +G L+Q + +H ++ K+       V N ++DMYAK GS+  AR+VFER+  +++++W
Sbjct: 263 LAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTW 322

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            SM+ AFA +G  + A+  F +M+   I  N +TF+ +L ACSH GLV EG+  F  M  
Sbjct: 323 NSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYF-DMIK 381

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
           EYN+ P+ EHY  +VDL GRA LL  AL  +  MP  P   +WG+L+AACR+H   ++ +
Sbjct: 382 EYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQ 441

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
           FAA  + QLDPD  G  VLL NIYA    W     +RK MK  G+ KE ACS +E+ N V
Sbjct: 442 FAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSV 501

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
           + F+  D +H + ++IY+  +E+  +++  GYVPD+   L+ ++++E+   + +HSEK+A
Sbjct: 502 HMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIA 561

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           L + LI     + IRI+KN+R+C DCH+  K +SKV+ REIV+RD  RFHH+ +G CSC 
Sbjct: 562 LAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCG 621

Query: 720 DYW 722
           DYW
Sbjct: 622 DYW 624



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 156/337 (46%), Gaps = 32/337 (9%)

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           P  A+ +   ML      + F+F  +LKA         G Q+H L  K  +  D +V + 
Sbjct: 133 PAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSA 192

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+ MY  CGK+  A  +FDK+  ++ V W+ +I G+ + G  +  L +F EM+ +  E  
Sbjct: 193 LLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEAT 252

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
               S I S  +  G L  G+ VH  ++ +   L A + +T++ MYA  G M  A+ +F+
Sbjct: 253 HFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFE 312

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
           +VL K+LV   +M++ +++ G                                 +EA+  
Sbjct: 313 RVLNKDLVTWNSMLTAFAQYGL-------------------------------GKEAVSH 341

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F EM+  G+  +++T L +++AC+H G++ + +     I +     ++     ++D+  +
Sbjct: 342 FEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGR 401

Query: 398 CGSLESARE-VFERMRRRNVISWTSMINAFAIHGDAR 433
            G L  A   +F+         W +++ A  +H +A+
Sbjct: 402 AGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAK 438



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 153/331 (46%), Gaps = 33/331 (9%)

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           L+  + +    + P   V    ++AC+++ NL     +H  +  +    DA L ++LI +
Sbjct: 36  LHDLDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHL 95

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           Y  CG +  A  +FDK+  K++V  T                               ++I
Sbjct: 96  YCKCGSVVEAHKVFDKMRKKDMVSWT-------------------------------SLI 124

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
           +GYA+N+ P EA+ L   M     KP+  T  S++ A           +IH    K  + 
Sbjct: 125 AGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWH 184

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            D+ V +A++DMYA+CG ++ A  VF+++  +N +SW ++I+ FA  GD   AL+ F +M
Sbjct: 185 EDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEM 244

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
           +    +    T+  +    +  G +++G+ + A M         +     M+D++ ++  
Sbjct: 245 QRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVG-NTMLDMYAKSGS 303

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHG 533
           + +A ++ E +    ++V W S++ A   +G
Sbjct: 304 MIDARKVFERV-LNKDLVTWNSMLTAFAQYG 333



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 96/203 (47%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++F ++ +      N  I   +     + AL VF +M   G     F++  I   +A 
Sbjct: 206 ATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAG 265

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L +G  VH    K       FV   ++ MY   G ++DAR +F+++  +D+V W+ M
Sbjct: 266 IGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSM 325

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           +  + Q GL  E ++ FEEM+ S +  +++    IL+ACS  G +  G+   + I + N+
Sbjct: 326 LTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKEYNL 385

Query: 250 ALDAHLQSTLITMYANCGCMDMA 272
             +     T++ +    G ++ A
Sbjct: 386 EPEIEHYVTVVDLLGRAGLLNYA 408


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/606 (34%), Positives = 367/606 (60%), Gaps = 33/606 (5%)

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           ++  +LK  A ++ LLEG +VH    K G+ SD  +   L+ MYG CG I +AR +FD++
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQI 85

Query: 179 SYR--DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
             +  D++ W+ +I  Y QNGL  E L+LF+ M +  V  +++ L   + AC+   +   
Sbjct: 86  QEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEE 145

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G  VH       +A+D  L+S                         + +V T++V+ + +
Sbjct: 146 GRIVHA------IAVDKRLES-------------------------DTMVGTSLVNMFGK 174

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
              V+ AR +FD +  K+L+ W+ M++ Y++N   ++A+++F  M + G++PD VT L++
Sbjct: 175 CKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTI 234

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           I ACA L    + + +H  I  +    D+ +  A++  Y KCG L++AR +F+ + ++N 
Sbjct: 235 IDACAALAAHTEGRMVHDDITASGIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNT 294

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           ++W++++ A+A +G    A+  +++M    ++ NG+TF+G+L+ACSHAG   +G + F S
Sbjct: 295 VTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGVDYFVS 354

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           M  ++ + P +EHY  ++DL GR+  L+ + +L+ +MP+ P+   W +L+ ACR+HG+++
Sbjct: 355 MIRDFGVVPVFEHYLNLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALLGACRMHGDVD 414

Query: 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMN 596
                A+ + +LDP+  G  +LLSN+Y+   R  +    RK+M+ RGI K+   S IE+ 
Sbjct: 415 RGARIAELIYELDPEDSGPYILLSNLYSSTGRMDEARRTRKAMRLRGITKQPGLSSIEVK 474

Query: 597 NEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSE 656
           + V+EF+ A + H Q  +I+ ++  + + +K AGYV D+ + L D+E+EEK +++ +HSE
Sbjct: 475 DRVHEFMAAQKLHPQLGRIHAEIERLKARVKEAGYVADVRAVLRDVEEEEKEQLLWYHSE 534

Query: 657 KLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVC 716
           +LA+ +GLIS+   + + IVKNLRVC DCH  +K +SKV  R+IV+RD  RFHH+++G C
Sbjct: 535 RLAIAFGLISTPPGTALHIVKNLRVCFDCHAAVKAISKVVGRKIVVRDAIRFHHFENGAC 594

Query: 717 SCKDYW 722
           SC DYW
Sbjct: 595 SCGDYW 600



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 112/459 (24%), Positives = 200/459 (43%), Gaps = 45/459 (9%)

Query: 24  SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83
           +L   K+ H+ ++K     ++ + L+  LL+  +         +  A S+F QI    + 
Sbjct: 39  ALLEGKRVHSCLVK---DGYASDRLIANLLIEMYG----KCGGIAEARSVFDQIQEKNAD 91

Query: 84  VS--NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG 141
           V   N  I A + +   K AL +F  M  EG+  ++ +    + A A      EG  VH 
Sbjct: 92  VISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEEGRIVHA 151

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201
           +       SD  V T LV M+G C  +  AR +FD +  +++V W+ M+  Y QN    +
Sbjct: 152 IAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCKK 211

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
            + +F  M +  V+PD +    I+ AC+     + G  VH+ I  + + +D  L + ++ 
Sbjct: 212 AIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGTAVMH 271

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
            Y  CG +D A+ +FD +  KN V  +A+++ Y                           
Sbjct: 272 FYGKCGRLDNARAIFDSLGKKNTVTWSAILAAY--------------------------- 304

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG-VLDQAQRIHLYIDKNA 380
               A+N +  EA++L++EM   G++ + +T L ++ AC+H G  +D        I    
Sbjct: 305 ----AQNGYETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFG 360

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDA-RNALIF 438
                     +ID+  + G L+ + ++   M    +  +W +++ A  +HGD  R A I 
Sbjct: 361 VVPVFEHYLNLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIA 420

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
               + +  D      +  LY  S  G +DE R    +M
Sbjct: 421 ELIYELDPEDSGPYILLSNLY--SSTGRMDEARRTRKAM 457


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/736 (33%), Positives = 376/736 (51%), Gaps = 86/736 (11%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L  A  +F QIPAP     N  IRA S                      + ++FP +LKA
Sbjct: 79  LSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKA 138

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            +    L     VH    + G  +D FV T LV +Y  C     A  +F +M  RD+V W
Sbjct: 139 CSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAW 198

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS-------------------- 226
           + M+ GY  +G + + +     M+  +  P+   L  +L                     
Sbjct: 199 NAMLAGYALHGKYSDTIACLLLMQ-DDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVR 257

Query: 227 ACS-------------------RAGNLSYGEAVHEFI-IDNNVALDAHLQSTLITMYANC 266
           ACS                   + G+L Y   V E + + N V       S L+  +  C
Sbjct: 258 ACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTW-----SALVGGFVLC 312

Query: 267 GCMDMAKGLFDKVLLK----------------------------------------NLVV 286
           G M  A  LF  +L +                                        +L  
Sbjct: 313 GRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTA 372

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346
             +++S Y++AG ++ A  +FDQMV KD + +SA++SGY +N    EA ++F +MQ C +
Sbjct: 373 GNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNV 432

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE 406
           +PD  TM+S+I AC+HL  L   +  H  +       +  + NA+IDMYAKCG ++ +R+
Sbjct: 433 QPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQ 492

Query: 407 VFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL 466
           +F+ M  R+++SW +MI  + IHG  + A   F  MK ++ +P+ VTFI ++ ACSH+GL
Sbjct: 493 IFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGL 552

Query: 467 VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLM 526
           V EG+  F  M ++Y I P+ EHY  MVDL  R   L EA + ++ MP   +V +WG+L+
Sbjct: 553 VTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALL 612

Query: 527 AACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILK 586
            ACRVH  I+L +  +  + QL P+  G  VLLSNI++   R+ +  E+R   KE+G  K
Sbjct: 613 GACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKK 672

Query: 587 ERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEE 646
              CS IE+N  ++ F+  DRSH Q+ +IY++L+ ++ ++   GY  D    L D+E+EE
Sbjct: 673 SPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQDVEEEE 732

Query: 647 KREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRT 706
           K + +L+HSEKLA+ +G+++  +D  I + KNLRVC DCH  IK ++ V  R I++RD  
Sbjct: 733 KEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDAN 792

Query: 707 RFHHYKDGVCSCKDYW 722
           RFHH+K+G CSC D+W
Sbjct: 793 RFHHFKNGQCSCGDFW 808



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 119/570 (20%), Positives = 231/570 (40%), Gaps = 111/570 (19%)

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
           CG +  AR +FD++    I  ++ +I  Y   G    +       +    +P+      +
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L ACS   +L    AVH       +  D  + + L+ +YA C     A  +F ++  +++
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 285 VVSTAMVSGYSRAGQVED----------------------------------ARLIFDQM 310
           V   AM++GY+  G+  D                                   R +    
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYS 255

Query: 311 V-------EKD-LICWSAMISGYAENNHPQEALKLFNEMQV---------------CG-- 345
           V        KD ++  +A++  YA+  H   A ++F  M V               CG  
Sbjct: 256 VRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRM 315

Query: 346 -----------------MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
                            + P  V   S + ACA+L  L   +++H  + K+    DL   
Sbjct: 316 LEAFSLFKDMLAQGLCFLSPTSVA--SALRACANLSDLCLGKQLHALLAKSGLHTDLTAG 373

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           N+++ MYAK G ++ A  +F++M  ++ +S++++++ +  +G A  A   F KM+  ++ 
Sbjct: 374 NSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQ 433

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
           P+  T + ++ ACSH   +  G+    S+     I  +      ++D++ +   +  + +
Sbjct: 434 PDVATMVSLIPACSHLAALQHGKCGHGSVIVR-GIASETSICNALIDMYAKCGRIDLSRQ 492

Query: 509 LVETMPFAPNVVIWGSLMAACRVH--GEIELAEFAAKQLLQLDPDHDGALVLL-----SN 561
           + + MP A ++V W +++A   +H  G+   A F   +    +PD    + L+     S 
Sbjct: 493 IFDVMP-ARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSG 551

Query: 562 IYAKDKRWQDVGELRKSMKER-----GILKERACSRIEMNNEVYEF-------------- 602
           +  + KRW  +   +  +  R     G++   A  R    +E Y+F              
Sbjct: 552 LVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLA--RGGFLDEAYQFIQGMPLKADVRVWG 609

Query: 603 --LTADRSHKQTDQIYEKLNEVISELKPAG 630
             L A R HK  D + ++++ +I +L P G
Sbjct: 610 ALLGACRVHKNID-LGKQVSSMIQQLGPEG 638


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/641 (36%), Positives = 351/641 (54%), Gaps = 35/641 (5%)

Query: 86   NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA---RAEGLLEGMQVHGL 142
            N  I + + ++    A+  F  +L +GL  D+F+   +L+A +     E    G QVH  
Sbjct: 964  NTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVY 1023

Query: 143  GTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202
              K G  +D FV T L+ +Y   GK+ +A  +       D+  W+ ++ GY ++    + 
Sbjct: 1024 AIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKA 1083

Query: 203  LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
            L  F  M    +  DE+ L+  + A     NL  G+ +  + I      D  + S ++ M
Sbjct: 1084 LEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDM 1143

Query: 263  YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
            Y  CG M                                +A  +F ++   D + W+ MI
Sbjct: 1144 YIKCGDM-------------------------------PNALELFGEISRPDEVAWTTMI 1172

Query: 323  SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
            SGY EN     AL +++ M+V G++PD+ T  ++I A + L  L+Q ++IH  + K  + 
Sbjct: 1173 SGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS 1232

Query: 383  GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
             D  V  +++DMY KCGS++ A  VF +M  R V+ W +M+   A HG    AL  F  M
Sbjct: 1233 LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTM 1292

Query: 443  KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
            +   I P+ VTFIGVL ACSH+GL  E  + F +M   Y I P+ EHY C+VD  GRA  
Sbjct: 1293 QSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGR 1352

Query: 503  LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
            ++EA  ++ +MPF  +  ++ +L+ ACR  G+ E A+  A +LL LDP    A VLLSNI
Sbjct: 1353 IQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNI 1412

Query: 563  YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
            YA  ++W DV + R  MK + + K+   S I++ N+V+ F+  DRSH Q   IYEK+ ++
Sbjct: 1413 YAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDL 1472

Query: 623  ISELKPAG-YVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRV 681
            +  ++  G YVPD    L+D+E+EEK   + +HSEKLA+ +GLIS+   + IR++KNLRV
Sbjct: 1473 MKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRV 1532

Query: 682  CEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            C DCH+ IK +SK+  REIV+RD  RFHH+++G CSC DYW
Sbjct: 1533 CGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/459 (26%), Positives = 217/459 (47%), Gaps = 44/459 (9%)

Query: 101  ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
            A+  F  +L   +  D  +   IL A   A+ L  G Q+H L  K  F     V   L+ 
Sbjct: 878  AIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMN 937

Query: 161  MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
            MY   G +  A   F      D++ W+ MI  Y QN L  E +  F ++    ++PD+  
Sbjct: 938  MYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFT 997

Query: 221  LSKILSACSRAGNLSY---GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
            L+ +L ACS      Y   G  VH + I   +  D+ + + LI +Y              
Sbjct: 998  LASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLY-------------- 1043

Query: 278  KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                             S+ G++++A  +     + DL  W+A++ GY ++N  ++AL+ 
Sbjct: 1044 -----------------SKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEH 1086

Query: 338  FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
            F+ M   G+  D++T+ + I A   L  L Q ++I  Y  K  F  DL V++ ++DMY K
Sbjct: 1087 FSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIK 1146

Query: 398  CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
            CG + +A E+F  + R + ++WT+MI+ +  +GD  +AL  ++ M+   + P+  TF  +
Sbjct: 1147 CGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATL 1206

Query: 458  LYACSHAGLVDEGREIFASMTN-EYNIPPKYEHY--GCMVDLFGRANLLREALELVETMP 514
            + A S    +++G++I A++   +Y++    +H+    +VD++ +   +++A  +   M 
Sbjct: 1207 IKASSCLTALEQGKQIHANVVKLDYSL----DHFVGTSLVDMYCKCGSVQDAYRVFRKMD 1262

Query: 515  FAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPD 551
                VV W +++     HG ++  L  F   Q   + PD
Sbjct: 1263 -VRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPD 1300



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 205/451 (45%), Gaps = 64/451 (14%)

Query: 139  VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
            VHG   K+GF  D FV   LV +Y   G +  ARL+FDKM  RD V W+VM+  Y +N  
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 199  FDEVLNLFEEMKMSNVEPDEMVLSKILSACS-------------------------RAGN 233
             DE L  F     S   PD   L  ++   +                         +  N
Sbjct: 799  QDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSN 858

Query: 234  L-SYGEAVHEFIIDNNV--ALDAH---LQSTL--------ITMYANCGCMDMAKG----- 274
            + ++ + + EF+    +  A+D     L+ST+        I + A  G  D+  G     
Sbjct: 859  IFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHA 918

Query: 275  LFDKVLLKNLV-VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
            L  K     +V VS ++++ YS+AG V  A   F    E DLI W+ MIS YA+NN   E
Sbjct: 919  LVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEME 978

Query: 334  ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ------RIHLYIDKNAFGGDLRV 387
            A+  F ++   G+KPD+ T+ SV+ AC+     D+ +      ++H+Y  K     D  V
Sbjct: 979  AICTFRDLLRDGLKPDQFTLASVLRACS---TGDEGEYFTLGSQVHVYAIKCGIINDSFV 1035

Query: 388  NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
            + A+ID+Y+K G ++ A  +       ++ SW +++  +     +R AL  F+ M +  I
Sbjct: 1036 STALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGI 1095

Query: 448  DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH----YGCMVDLFGRANLL 503
              + +T    + A      + +G++I A     Y I   + +       ++D++ +   +
Sbjct: 1096 PIDEITLATAIKASGCLINLKQGKQIQA-----YAIKLGFNNDLWVSSGVLDMYIKCGDM 1150

Query: 504  REALELVETMPFAPNVVIWGSLMAACRVHGE 534
              ALEL   +   P+ V W ++++    +G+
Sbjct: 1151 PNALELFGEIS-RPDEVAWTTMISGYIENGD 1180



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 163/408 (39%), Gaps = 64/408 (15%)

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           AIA A+ L  G + H      G   D ++   L+ MY  CG +  AR +FDK S RD+V 
Sbjct: 621 AIAMAD-LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVT 679

Query: 186 WSVMIDGY--FQNGLFDEVLN---LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           W+ ++  Y  F +  ++ VL    LF  ++        + L+ +L  C  +G +   E V
Sbjct: 680 WNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETV 739

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H + +     LD  +   L+ +Y   G +  A+ LFDK                      
Sbjct: 740 HGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDK---------------------- 777

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
                    M E+D + W+ M+  Y EN+   EAL+ F+     G  PD   +  VI   
Sbjct: 778 ---------MPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGV 828

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
                             +    + + +   +  YA         ++F   +  N+ +W 
Sbjct: 829 -----------------NSDVSNNRKRHAEQVKAYAM--------KMFPFDQGSNIFAWN 863

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
             +  F   G    A+  F  +   +I  + VT + +L A   A  +D G +I A +  +
Sbjct: 864 KKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHA-LVIK 922

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
            +  P       +++++ +A ++  A +     P   +++ W +++++
Sbjct: 923 SSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP-ELDLISWNTMISS 969


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/653 (33%), Positives = 366/653 (56%), Gaps = 32/653 (4%)

Query: 70   ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
            A+ +F ++P   +   N  I   + +     A+++F++M  +G  +D  +   +L A AR
Sbjct: 464  AVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACAR 523

Query: 130  AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            +     G  VHG   K G   +  +   L+ MY  C        +F  M+ +++V W+ M
Sbjct: 524  SHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAM 583

Query: 190  IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
            I  Y + GLFD+V  L +EM +  ++PD   ++ +L   +   +L  G++VH + I N +
Sbjct: 584  ITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGM 643

Query: 250  ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                 + + L+ MY NC               +N+                E+ARL+FD 
Sbjct: 644  EKLLPVANALMEMYVNC---------------RNM----------------EEARLVFDH 672

Query: 310  MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
            +  KD+I W+ +I GY+ NN   E+  LF++M +   KP+ VTM  ++ A A +  L++ 
Sbjct: 673  VTNKDIISWNTLIGGYSRNNFANESFSLFSDMLL-QFKPNTVTMTCILPAVASISSLERG 731

Query: 370  QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
            + IH Y  +  F  D   +NA++DMY KCG+L  AR +F+R+ ++N+ISWT MI  + +H
Sbjct: 732  REIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMH 791

Query: 430  GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
            G  ++A+  F +M+   ++P+  +F  +LYAC H+GL  EG + F +M  EY I PK +H
Sbjct: 792  GCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKH 851

Query: 490  YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
            Y C+VDL      L+EA E +E+MP  P+  IW SL+  CR+H +++LAE  A ++ +L+
Sbjct: 852  YTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLE 911

Query: 550  PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
            P++ G  VLL+NIYA+ +RW+ V +L+  +  RG+ +   CS IE+  +V+ F+  +R+H
Sbjct: 912  PENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNH 971

Query: 610  KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
             + ++I E L+ V   ++  G+ P    +L+   D    E +  HS KLA+ +G++   +
Sbjct: 972  PEWNRIAEFLDHVARRMREEGHDPKKKYSLMGANDAVHDEALCGHSSKLAVTFGVLHLPE 1031

Query: 670  DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
               IR+ KN +VC  CH   K +SK+  REI++RD +RFHH++ G CSC+ ++
Sbjct: 1032 GRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRFHHFEGGRCSCRGHF 1084



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 146/547 (26%), Positives = 245/547 (44%), Gaps = 49/547 (8%)

Query: 70  ALSIFSQIPAPPS-RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           A  +F  +P+  +  V N  +   + +   + +L +F +M   G+T D  +   +LK I 
Sbjct: 362 ARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCIT 421

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
                 +G+  HG   KLGFG+   V   L+  Y     I +A L+FD+M ++D + W+ 
Sbjct: 422 CLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNS 481

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I G   NGL  E + LF  M M   E D   L  +L AC+R+     G  VH + +   
Sbjct: 482 VISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTG 541

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
           +  +  L + L+ MY+NC        +F  +  KN+V  TAM++ Y+RAG       +FD
Sbjct: 542 LIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAG-------LFD 594

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           ++                          L  EM + G+KPD   + SV+   A    L Q
Sbjct: 595 KVA------------------------GLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQ 630

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            + +H Y  +N     L V NA+++MY  C ++E AR VF+ +  +++ISW ++I  ++ 
Sbjct: 631 GKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSR 690

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           +  A  +   F+ M  +   PN VT   +L A +    ++ GREI A       +   Y 
Sbjct: 691 NNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYT 749

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH--GEIELAEFAAKQLL 546
               +VD++ +   L  A  L + +    N++ W  ++A   +H  G+  +A F   +  
Sbjct: 750 S-NALVDMYVKCGALLVARVLFDRLT-KKNLISWTIMIAGYGMHGCGKDAVALFEQMRGS 807

Query: 547 QLDPDHDGALVLL-----SNIYAKDKRWQDVGELRKSMKERGILKERAC-----SRIEMN 596
            ++PD      +L     S + A+   W+    +RK  K    LK   C     S     
Sbjct: 808 GVEPDTASFSAILYACCHSGLTAEG--WKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNL 865

Query: 597 NEVYEFL 603
            E +EF+
Sbjct: 866 KEAFEFI 872



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/483 (26%), Positives = 211/483 (43%), Gaps = 82/483 (16%)

Query: 73  IFSQIPAPPS--RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARA 130
           +F ++P   +  RV    + A + +   +  + +F +M   G++ D  +   +LK IA  
Sbjct: 152 VFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASL 211

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
             + EG  +HGL  KLG G    V   L+ +Y  CG + DA  +FD M  RD + W+  I
Sbjct: 212 GSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTI 271

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV- 249
            GYF NG  D  ++LF +M     E   + +  +L AC+  G    G+ VH + + + + 
Sbjct: 272 SGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLL 331

Query: 250 --------ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQV 300
                    +D  L S L+ MY  CG M  A+ +FD +  K N+ V   ++ GY++A + 
Sbjct: 332 WDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEF 391

Query: 301 EDARLIFDQMVE--------------KDLICWS-------------------------AM 321
           E++ L+F+QM E              K + C S                         A+
Sbjct: 392 EESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNAL 451

Query: 322 ISGYAENNH-------------------------------PQEALKLFNEMQVCGMKPDK 350
           IS YA++N                                  EA++LF  M + G + D 
Sbjct: 452 ISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDS 511

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
            T+LSV+ ACA        + +H Y  K    G+  + NA++DMY+ C    S  ++F  
Sbjct: 512 TTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRN 571

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M ++NV+SWT+MI ++   G          +M  + I P+      VL+  +    + +G
Sbjct: 572 MAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQG 631

Query: 471 REI 473
           + +
Sbjct: 632 KSV 634



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/474 (24%), Positives = 204/474 (43%), Gaps = 60/474 (12%)

Query: 80  PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQV 139
           PPSRV +  +            L   L++L     +   S+  +++       L    + 
Sbjct: 57  PPSRVLSSDVNLRIQRLCQAGDLAAALRLLGSDGGVGVRSYCAVVQLCGEERSLEAARRA 116

Query: 140 HGL---GTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR--DIVPWSVMIDGYF 194
           H L   GT    GS   +   LV  Y  CG +  AR++FD+M  R  D+  W+ ++  Y 
Sbjct: 117 HALVRAGTGGIIGS--VLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYA 174

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           + G F E ++LF +M+   V PD   +S +L   +  G+++ GE +H  +    +     
Sbjct: 175 KAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACA 234

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           + + LI +Y+ CGCM+ A  +FD +  ++ +   + +S                      
Sbjct: 235 VANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTIS---------------------- 272

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
                    GY  N     A+ LF++M   G +   VT+LSV+ ACA LG     + +H 
Sbjct: 273 ---------GYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHG 323

Query: 375 YIDKNAFGGDLRVNNAIID---------MYAKCGSLESAREVFERM-RRRNVISWTSMIN 424
           Y  K+    DL    + ID         MY KCG + SAR VF+ M  + NV  W  ++ 
Sbjct: 324 YSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMG 383

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL-----YACSHAGLVDEGREIFASMTN 479
            +A   +   +L+ F +M +  I P+      +L      +C+  GLV  G  +      
Sbjct: 384 GYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGT 443

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           +  +         ++  + ++N++  A+ + + MP   + + W S+++ C  +G
Sbjct: 444 QCAV------CNALISFYAKSNMIDNAVLVFDRMPH-QDTISWNSVISGCTSNG 490



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 148/306 (48%), Gaps = 28/306 (9%)

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK--DLICWSAMISGYAENNHP 331
           G+   VL K LV++      Y + G +  AR++FD+M  +  D+  W++++S YA+    
Sbjct: 126 GIIGSVLGKRLVLA------YLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDF 179

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           QE + LF +MQ CG+ PD   +  V+   A LG + + + IH  ++K   G    V NA+
Sbjct: 180 QEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANAL 239

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           I +Y++CG +E A +VF+ M  R+ ISW S I+ +  +G    A+  F+KM  E  + + 
Sbjct: 240 IALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISS 299

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY------------EHYGC-MVDLFG 498
           VT + VL AC+  G      E+   + + Y++                E  G  +V ++ 
Sbjct: 300 VTVLSVLPACAELGF-----ELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYV 354

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL--LQLDPDHDGAL 556
           +   +  A  + + MP   NV +W  +M       E E +    +Q+  L + PD     
Sbjct: 355 KCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALS 414

Query: 557 VLLSNI 562
            LL  I
Sbjct: 415 CLLKCI 420


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/717 (33%), Positives = 400/717 (55%), Gaps = 41/717 (5%)

Query: 9   KPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLK-LLLTSFSLPTTTPSSL 67
           +P  +  +T + +C+S+  +++  A   ++S +   +  ++L+  LLT ++       SL
Sbjct: 118 QPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYA----KCGSL 173

Query: 68  YYALSIFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
             A  +F ++    S  S N  I A + S   + A++++  M  E       +F  +L A
Sbjct: 174 EDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSV---RTFTSVLSA 230

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            +    L +G ++H L +  G   D  +Q  L+ MY  C  + DA  +F ++  RD+V W
Sbjct: 231 CSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSW 290

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           S MI  + +  LFDE +  + +M++  V P+    + +L AC+  G+L  G AVH+ I+ 
Sbjct: 291 SAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILG 350

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
           N   +                                LV  TA+V  Y+  G +++AR +
Sbjct: 351 NGYKI-------------------------------TLVNGTALVDLYTSYGSLDEARSL 379

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP-DKVTMLSVISACAHLGV 365
           FDQ+  +D   W+ +I GY++  H    L+L+ EM+     P  K+    VISACA LG 
Sbjct: 380 FDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGA 439

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
              A++ H  I+ +    D  +  ++++MY++ G+LESAR+VF++M  R+ ++WT++I  
Sbjct: 440 FADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAG 499

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
           +A HG+   AL  + +M+ E  +P+ +TF+ VLYACSHAGL ++G+++F S+ ++Y + P
Sbjct: 500 YAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHP 559

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
              HY C++DL  RA  L +A EL+  MP  PN V W SL+ A R+H +++ A  AA Q+
Sbjct: 560 NIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQI 619

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
            +LDP    + VLLSN++A       +  +R +M  RG+ K R  S IE+ ++++EF   
Sbjct: 620 TKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVG 679

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           D SH +  +I+ +L  +  ++K AGYVP+    L D+ ++EK  ++  HSEKLA+ +GLI
Sbjct: 680 DNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLI 739

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           ++   + +RI   LR+C DCH+ +K +S +  REI++RD +RFH ++DG CSC DYW
Sbjct: 740 ATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 198/367 (53%), Gaps = 42/367 (11%)

Query: 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
           ++ F+   +V  YG CG +  AR+ FD ++ ++   W  M+  Y QNG +   L+L++ M
Sbjct: 56  ANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM 115

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN-NVALDAHLQSTLITMYANCGC 268
              +++P+ +V + +L AC+    L  G+A+H  I     + LD  L+++L+TMYA CG 
Sbjct: 116 ---DLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGS 172

Query: 269 MDMAKGLFDKVLLKNLVVS-TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
           ++ AK LF+++  +  V S  AM++ Y+++G                             
Sbjct: 173 LEDAKRLFERMSGRRSVSSWNAMIAAYAQSG----------------------------- 203

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
             H +EA++L+ +M V   +P   T  SV+SAC++LG+LDQ ++IH  I       DL +
Sbjct: 204 --HFEEAIRLYEDMDV---EPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSL 258

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
            NA++ MYA+C  L+ A ++F+R+ RR+V+SW++MI AFA       A+ F++KM+ E +
Sbjct: 259 QNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGV 318

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFAS-MTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
            PN  TF  VL AC+  G +  GR +    + N Y I     +   +VDL+     L EA
Sbjct: 319 RPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKIT--LVNGTALVDLYTSYGSLDEA 376

Query: 507 LELVETM 513
             L + +
Sbjct: 377 RSLFDQI 383



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 141/251 (56%), Gaps = 16/251 (6%)

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           N+ +   +V  Y + G V  AR+ FD +  K+   W +M++ YA+N H + AL L+  M 
Sbjct: 57  NVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD 116

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID-KNAFGGDLRVNNAIIDMYAKCGSL 401
              ++P+ V   +V+ ACA +  L++ + IH  I        D+ + N+++ MYAKCGSL
Sbjct: 117 ---LQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSL 173

Query: 402 ESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           E A+ +FERM  RR+V SW +MI A+A  G    A+  +  M    ++P+  TF  VL A
Sbjct: 174 EDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSA 230

Query: 461 CSHAGLVDEGREIFA---SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           CS+ GL+D+GR+I A   S   E ++  +      ++ ++ R   L +A ++ + +P   
Sbjct: 231 CSNLGLLDQGRKIHALISSRGTELDLSLQ----NALLTMYARCKCLDDAAKIFQRLP-RR 285

Query: 518 NVVIWGSLMAA 528
           +VV W +++AA
Sbjct: 286 DVVSWSAMIAA 296



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 4/173 (2%)

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L+  ++IH  I   A   ++ + N I+  Y KCGS+ SAR  F+ + R+N  SW SM+ A
Sbjct: 40  LESVRQIHDRI-SGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTA 98

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
           +A +G  R AL  + +M    + PN V +  VL AC+    ++EG+ I + ++    +  
Sbjct: 99  YAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKL 155

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
                  ++ ++ +   L +A  L E M    +V  W +++AA    G  E A
Sbjct: 156 DVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEA 208


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/598 (38%), Positives = 359/598 (60%), Gaps = 8/598 (1%)

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
           T    L  A ++F  +P P     N  +   +   R + AL+ F+ M +E   ++ +SF 
Sbjct: 96  TKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFG 155

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
             L A A    L  G+Q+H L +K  +  D ++ + LV MY  CG +  A+  FD M+ R
Sbjct: 156 SALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVR 215

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           +IV W+ +I  Y QNG   + L +F  M  + VEPDE+ L+ ++SAC+    +  G  +H
Sbjct: 216 NIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIH 275

Query: 242 EFIID-NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
             ++  +    D  L + L+ MYA C  ++ A+ +FD++ L+N+V  T+MV GY+RA  V
Sbjct: 276 ARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASV 335

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
           + ARL+F  M+EK+++ W+A+I+GY +N   +EA++LF  ++   + P   T  ++++AC
Sbjct: 336 KAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNAC 395

Query: 361 AHLGVLDQAQRIHLYIDKNAFG------GDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           A+L  L   ++ H  I K+ F        D+ V N++IDMY KCG +E    VFERM  R
Sbjct: 396 ANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVER 455

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           +V+SW +MI  +A +G   NAL  F KM      P+ VT IGVL ACSHAGLV+EGR  F
Sbjct: 456 DVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYF 515

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
            SM  E  + P  +H+ CMVDL GRA  L EA +L++TMP  P+ V+WGSL+AAC+VHG 
Sbjct: 516 HSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGN 575

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
           IEL ++ A++L+++DP + G  VLLSN+YA+  RW+DV  +RK M++RG++K+  CS IE
Sbjct: 576 IELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIE 635

Query: 595 MNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652
           + + V+ F+  D+ H     I+  L  +  ++K AGYVP+     +  E+E   E++L
Sbjct: 636 IQSRVHVFMVKDKRHPLKKDIHLVLKFLTEQMKWAGYVPEADDDEI-CEEESDSELVL 692



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 192/413 (46%), Gaps = 67/413 (16%)

Query: 107 KMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACG 166
           K++ E   +D   F  +L +  R++  ++  ++H    K  F S+ F+Q  LV  YG CG
Sbjct: 9   KLVGELCFLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCG 68

Query: 167 KILDARLMFDKMSYR-------------------------------DIVPWSVMIDGYFQ 195
              DAR +FD+M  R                               D   W+ M+ G+ Q
Sbjct: 69  YFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQ 128

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           +  F+E L  F +M   +   +E      LSAC+   +L+ G  +H  I  +   LD ++
Sbjct: 129 HDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYM 188

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            S L+ MY+ CG +  A+  FD + ++N+V                              
Sbjct: 189 GSALVDMYSKCGVVACAQRAFDGMAVRNIV------------------------------ 218

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL- 374
             W+++I+ Y +N    +AL++F  M   G++PD++T+ SV+SACA    + +  +IH  
Sbjct: 219 -SWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHAR 277

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
            + ++ +  DL + NA++DMYAKC  +  AR VF+RM  RNV+S TSM+  +A     + 
Sbjct: 278 VVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKA 337

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
           A + F+ M    ++ N V++  ++   +  G  +E   +F  +  E   P  Y
Sbjct: 338 ARLMFSNM----MEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHY 386



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 162/304 (53%), Gaps = 1/304 (0%)

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           D    +K+L +C R+ +      +H  II    + +  +Q+ L+  Y  CG  + A+ +F
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           D++  +N     A++S  ++ G++++A  +F  M E D   W+AM+SG+A+++  +EAL+
Sbjct: 78  DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALR 137

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
            F +M       ++ +  S +SACA L  L+   +IH  I K+ +  D+ + +A++DMY+
Sbjct: 138 FFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYS 197

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KCG +  A+  F+ M  RN++SW S+I  +  +G A  AL  F  M D  ++P+ +T   
Sbjct: 198 KCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLAS 257

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           V+ AC+    + EG +I A +               +VD++ +   + EA  + + MP  
Sbjct: 258 VVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL- 316

Query: 517 PNVV 520
            NVV
Sbjct: 317 RNVV 320


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/641 (35%), Positives = 376/641 (58%), Gaps = 9/641 (1%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTT 63
           +  P++ L L  + A+   S    +K     ++    S HS +  + +L+         +
Sbjct: 1   MHPPSRLLVLLHAGAVHPPSFRVLLKLHAHHLVSGLLSSHSTSPFIDRLVAAFAHSDPAS 60

Query: 64  PSSLYYALSIFSQIPAPPSRV--SNKFIRAISW-SHR---PKHALKVFLKMLNEG-LTID 116
           P  L +AL+I + +P+PP      N   RA+S   H+    +H L ++  +L+ G    D
Sbjct: 61  PRPLLHALAILASLPSPPDSAFPYNAAFRALSLCPHQHLVDRHCLPLYRALLHSGSARPD 120

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
             +FP ++KA AR +    G  V G   KLGF +D FV    +  +   G +  AR +FD
Sbjct: 121 HLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFD 180

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN--VEPDEMVLSKILSACSRAGNL 234
           +   RD+V W+ +I GY ++GL  E L LF  +      V PDE+ +   +S C++ G+L
Sbjct: 181 ESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDL 240

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             G+ +HEF+ +  V     L + ++ MY  CG +++A  +F+++  +  V  T M+ G+
Sbjct: 241 ELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGH 300

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
           +R G +EDAR++FD+M E+D+  W+A+++GY +N   +EA+ LF+EMQ   + P+++TM+
Sbjct: 301 ARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMV 360

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           +++SAC+ LG L+    +H YID++     + +  +++DMYAKCG+++ A  VF  +  +
Sbjct: 361 NLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQ 420

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           N ++WTSMI   A HG A  A+ +F +M D  + P+ +TFIGVL AC HAGLV+ GR+ F
Sbjct: 421 NALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFF 480

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
           + M  +Y++  K +HY CM+DL GRA  L EA +LV  MP  P+ V+WG+L  ACR+HG 
Sbjct: 481 SLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGN 540

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
           I L E AA +L++LDP   G  VLL+N+YA+    +   ++R  M+  G+ K   CS IE
Sbjct: 541 ITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIE 600

Query: 595 MNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
           +N  V+EF+  D+SH  T+ IY+ L+E+  +++    + DI
Sbjct: 601 LNGVVHEFIVKDKSHLDTNAIYDCLHEITLQMRHIANLIDI 641


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/641 (36%), Positives = 351/641 (54%), Gaps = 35/641 (5%)

Query: 86   NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA---RAEGLLEGMQVHGL 142
            N  I + + ++    A+  F  +L +GL  D+F+   +L+A +     E    G QVH  
Sbjct: 964  NTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVY 1023

Query: 143  GTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202
              K G  +D FV T L+ +Y   GK+ +A  +       D+  W+ ++ GY ++    + 
Sbjct: 1024 AIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKA 1083

Query: 203  LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
            L  F  M    +  DE+ L+  + A     NL  G+ +  + I      D  + S ++ M
Sbjct: 1084 LEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDM 1143

Query: 263  YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
            Y  CG M                                +A  +F ++   D + W+ MI
Sbjct: 1144 YIKCGDM-------------------------------PNALELFGEISRPDEVAWTTMI 1172

Query: 323  SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
            SGY EN     AL +++ M+V G++PD+ T  ++I A + L  L+Q ++IH  + K  + 
Sbjct: 1173 SGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS 1232

Query: 383  GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
             D  V  +++DMY KCGS++ A  VF +M  R V+ W +M+   A HG    AL  F  M
Sbjct: 1233 LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTM 1292

Query: 443  KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
            +   I P+ VTFIGVL ACSH+GL  E  + F +M   Y I P+ EHY C+VD  GRA  
Sbjct: 1293 QSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGR 1352

Query: 503  LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
            ++EA  ++ +MPF  +  ++ +L+ ACR  G+ E A+  A +LL LDP    A VLLSNI
Sbjct: 1353 IQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNI 1412

Query: 563  YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
            YA  ++W DV + R  MK + + K+   S I++ N+V+ F+  DRSH Q   IYEK+ ++
Sbjct: 1413 YAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDL 1472

Query: 623  ISELKPAG-YVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRV 681
            +  ++  G YVPD    L+D+E+EEK   + +HSEKLA+ +GLIS+   + IR++KNLRV
Sbjct: 1473 MKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRV 1532

Query: 682  CEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            C DCH+ IK +SK+  REIV+RD  RFHH+++G CSC DYW
Sbjct: 1533 CGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/459 (26%), Positives = 217/459 (47%), Gaps = 44/459 (9%)

Query: 101  ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
            A+  F  +L   +  D  +   IL A   A+ L  G Q+H L  K  F     V   L+ 
Sbjct: 878  AIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMN 937

Query: 161  MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
            MY   G +  A   F      D++ W+ MI  Y QN L  E +  F ++    ++PD+  
Sbjct: 938  MYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFT 997

Query: 221  LSKILSACSRAGNLSY---GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
            L+ +L ACS      Y   G  VH + I   +  D+ + + LI +Y              
Sbjct: 998  LASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLY-------------- 1043

Query: 278  KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                             S+ G++++A  +     + DL  W+A++ GY ++N  ++AL+ 
Sbjct: 1044 -----------------SKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEH 1086

Query: 338  FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
            F+ M   G+  D++T+ + I A   L  L Q ++I  Y  K  F  DL V++ ++DMY K
Sbjct: 1087 FSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIK 1146

Query: 398  CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
            CG + +A E+F  + R + ++WT+MI+ +  +GD  +AL  ++ M+   + P+  TF  +
Sbjct: 1147 CGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATL 1206

Query: 458  LYACSHAGLVDEGREIFASMTN-EYNIPPKYEHY--GCMVDLFGRANLLREALELVETMP 514
            + A S    +++G++I A++   +Y++    +H+    +VD++ +   +++A  +   M 
Sbjct: 1207 IKASSCLTALEQGKQIHANVVKLDYSL----DHFVGTSLVDMYCKCGSVQDAYRVFRKMD 1262

Query: 515  FAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPD 551
                VV W +++     HG ++  L  F   Q   + PD
Sbjct: 1263 -VRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPD 1300



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 205/451 (45%), Gaps = 64/451 (14%)

Query: 139  VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
            VHG   K+GF  D FV   LV +Y   G +  ARL+FDKM  RD V W+VM+  Y +N  
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 199  FDEVLNLFEEMKMSNVEPDEMVLSKILSACS-------------------------RAGN 233
             DE L  F     S   PD   L  ++   +                         +  N
Sbjct: 799  QDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSN 858

Query: 234  L-SYGEAVHEFIIDNNV--ALDAH---LQSTL--------ITMYANCGCMDMAKG----- 274
            + ++ + + EF+    +  A+D     L+ST+        I + A  G  D+  G     
Sbjct: 859  IFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHA 918

Query: 275  LFDKVLLKNLV-VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
            L  K     +V VS ++++ YS+AG V  A   F    E DLI W+ MIS YA+NN   E
Sbjct: 919  LVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEME 978

Query: 334  ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ------RIHLYIDKNAFGGDLRV 387
            A+  F ++   G+KPD+ T+ SV+ AC+     D+ +      ++H+Y  K     D  V
Sbjct: 979  AICTFRDLLRDGLKPDQFTLASVLRACS---TGDEGEYFTLGSQVHVYAIKCGIINDSFV 1035

Query: 388  NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
            + A+ID+Y+K G ++ A  +       ++ SW +++  +     +R AL  F+ M +  I
Sbjct: 1036 STALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGI 1095

Query: 448  DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH----YGCMVDLFGRANLL 503
              + +T    + A      + +G++I A     Y I   + +       ++D++ +   +
Sbjct: 1096 PIDEITLATAIKASGCLINLKQGKQIQA-----YAIKLGFNNDLWVSSGVLDMYIKCGDM 1150

Query: 504  REALELVETMPFAPNVVIWGSLMAACRVHGE 534
              ALEL   +   P+ V W ++++    +G+
Sbjct: 1151 PNALELFGEIS-RPDEVAWTTMISGYIENGD 1180



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 163/408 (39%), Gaps = 64/408 (15%)

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           AIA A+ L  G + H      G   D ++   L+ MY  CG +  AR +FDK S RD+V 
Sbjct: 621 AIAMAD-LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVT 679

Query: 186 WSVMIDGY--FQNGLFDEVLN---LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           W+ ++  Y  F +  ++ VL    LF  ++        + L+ +L  C  +G +   E V
Sbjct: 680 WNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETV 739

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H + +     LD  +   L+ +Y   G +  A+ LFDK                      
Sbjct: 740 HGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDK---------------------- 777

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
                    M E+D + W+ M+  Y EN+   EAL+ F+     G  PD   +  VI   
Sbjct: 778 ---------MPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGV 828

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
                             +    + + +   +  YA         ++F   +  N+ +W 
Sbjct: 829 -----------------NSDVSNNRKRHAEQVKAYAM--------KMFPFDQGSNIFAWN 863

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
             +  F   G    A+  F  +   +I  + VT + +L A   A  +D G +I A +  +
Sbjct: 864 KKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHA-LVIK 922

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
            +  P       +++++ +A ++  A +     P   +++ W +++++
Sbjct: 923 SSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP-ELDLISWNTMISS 969


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/553 (41%), Positives = 328/553 (59%), Gaps = 36/553 (6%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           AR +FD +++ D   ++ +I  +  +      L+LF +M M+ V PD      +L AC+R
Sbjct: 41  ARSIFDLIAFPDTFAFNTIIRAH-ADSSPSFSLSLFSKMTMAGVSPDHFTFPFVLKACAR 99

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
              L  G  +H  +       D ++Q+ LI  Y  CG +D A        LK        
Sbjct: 100 ---LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFA--------LK-------- 140

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG-MKPD 349
                           F++M E+DL+ WS+MI+ +A+N    EAL LF  MQ+ G +KPD
Sbjct: 141 ---------------AFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPD 185

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           +V +LSV+SA + LG L+  + I  +I +N     + +  A++DM+++CG +E +  VF+
Sbjct: 186 EVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFD 245

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            M  RNV++WT++IN  A+HG +  AL  F +M++    P+ VTF GVL ACSH GLV E
Sbjct: 246 EMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSE 305

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G  +F S+ NEY + P  EHYGCMVDL GRA LL EA + V+ MP  PN +IW +L+ AC
Sbjct: 306 GWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGAC 365

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
             H  IELAE   +++ +LD  HDG  VLLSN+Y    RW +   +R SM+E+ I K+  
Sbjct: 366 VNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPG 425

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
           CS I +N+ ++EF+  D +H Q + I E L  +I  LK  GY PDI + L D+E+EEK  
Sbjct: 426 CSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKES 485

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
            + +HSEKLA+ + L+  K    IR++KNLR+C DCH F+K  S V+ REI+IRDR RFH
Sbjct: 486 TLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFH 545

Query: 710 HYKDGVCSCKDYW 722
           H+  G CSC+DYW
Sbjct: 546 HFSKGSCSCRDYW 558



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 132/409 (32%), Positives = 213/409 (52%), Gaps = 45/409 (11%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV 84
           + H+ + HA++LK  H +H    L L+ LL   S   + P+SL YA SIF  I  P +  
Sbjct: 1   MNHIYKLHARLLKTGHHNHP---LALRRLL--LSCAASAPASLSYARSIFDLIAFPDTFA 55

Query: 85  SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
            N  IRA +    P  +L +F KM   G++ D F+FP +LKA AR   L  G+ +H L  
Sbjct: 56  FNTIIRAHA-DSSPSFSLSLFSKMTMAGVSPDHFTFPFVLKACAR---LQTGLDLHSLLF 111

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           KLGF SD +VQ GL+  YG CG +  A   F++M  RD+V WS MI  + +NG   E L 
Sbjct: 112 KLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALA 171

Query: 205 LFEEMKM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
           LF+ M++   V+PDE+++  ++SA S  G+L  G+ +  FI  N +     L + L+ M+
Sbjct: 172 LFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMF 231

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
           + CGC++ +  +FD++  +N++  TA+++G +  G+                        
Sbjct: 232 SRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGR------------------------ 267

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
                    EAL++F EM+  G +PD VT   V+ AC+H G++ +   +   I +N +G 
Sbjct: 268 -------SAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESI-RNEYGM 319

Query: 384 DLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           +    +   ++D+  + G L  A +  + M  R N I W +++ A   H
Sbjct: 320 EPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNH 368


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/598 (37%), Positives = 348/598 (58%), Gaps = 7/598 (1%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           +  C S+  + Q HA ++      H  + +  ++L +  +LP      ++YA  +F +IP
Sbjct: 19  LRRCGSVHRLNQLHAHLVV-----HGVDDVTSQILASYCALPAG--GGVWYARQLFDRIP 71

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P   V N  IRA   SH P+ AL +   M+  G+  + F+ P +LKA AR +     M 
Sbjct: 72  DPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMV 131

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
            HG+  KLGF    FV   L+  Y + G + D+R  FD+M  R++V W+ MI+GY Q G 
Sbjct: 132 THGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGN 191

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
             E  +LFE M+   +  DE  L  +L ACS  GNL +G+ VH  ++     +D  L + 
Sbjct: 192 TREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANA 251

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           L+ MY  CG + MA   FD +  KN V  T+M+   ++   ++ AR  F+Q+ EK +I W
Sbjct: 252 LVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISW 311

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +AMIS Y +     EAL L+N M++ G+ PD+ T+ +V+SAC  LG L   + IH  I  
Sbjct: 312 NAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRD 371

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
           N     + + N+++DMYA+CG +++A  +F  M  +NVISW ++I A A+HG A++AL+F
Sbjct: 372 NFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMF 431

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F  M  ++  P+ +TF+ +L AC+H GL++ G+  F +M + YN+ P  EHY CMVDL G
Sbjct: 432 FRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLG 491

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558
           R   L +A++L++ MP  P+VV+WG+L+ ACR+HG I++ +   KQLL+L+    G  VL
Sbjct: 492 RGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVL 551

Query: 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           +SN+  +  +W+D+  LRK M+E G+ K    S IE N+ ++E       H+ +D +Y
Sbjct: 552 ISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNIHESGAEGIGHESSDDMY 609


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/680 (36%), Positives = 375/680 (55%), Gaps = 36/680 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKM----------LNEGLTIDRFS 119
           A + F  +P   +   N  I     +H P  AL +F +M          L  GL++ R +
Sbjct: 36  ARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLGSYNALIAGLSLRRHT 95

Query: 120 FP---------PILKAIARAEGLLEGMQVHGL---GTKLGFGSDP----FVQTGLVGMYG 163
            P         P+  ++     LL G   HGL     +L F   P       T L+G + 
Sbjct: 96  LPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRL-FHQMPERNHVTYTVLLGGFL 154

Query: 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSK 223
             G++ +AR +FD+M  +D+V  + M+ GY Q G   E   LF+EM   NV    +  + 
Sbjct: 155 DAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTA 210

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           ++S  ++ G +     + E + D N        + ++  Y   G ++ A+ LF+ +    
Sbjct: 211 MISGYAQNGKVILARKLFEVMPDRNEVS----WTAMLVGYIQAGHVEDAEDLFNAMPDHP 266

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           +    AM+ G+ + G V+ A+ +F++M  +D   WSAMI  Y +N    EAL  F EM  
Sbjct: 267 VAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLC 326

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
            G++P+  + +S+++ CA L   D  + +H  + + +F  D+   +A+I MY KCG+L+ 
Sbjct: 327 RGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDK 386

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
           A+ VF     ++V+ W SMI  +A HG    AL  F+ ++   + P+G+T+IGVL ACS+
Sbjct: 387 AKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSY 446

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
            G V EGREIF SM    +I     HY CMVDL GRA L+ EAL+L+  MP  P+ +IWG
Sbjct: 447 TGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWG 506

Query: 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
           +LM ACR+H   E+AE AAK+LL+L+P   G  VLLS+IY    RW+D  ++RK +  R 
Sbjct: 507 ALMGACRMHKNAEIAEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRN 566

Query: 584 ILKERACSRIEMNNEVYEFLTAD-RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDL 642
           + K   CS IE N  V+ F + D  SH +   I   L E+   L  +GY  D    L D+
Sbjct: 567 LNKSPGCSWIEYNKMVHLFTSGDVLSHPEHAIILNMLEELDGLLMESGYSADGSFVLHDV 626

Query: 643 EDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVI 702
           ++E+K + + +HSE+ A+ YGL+       IR++KNLRVC DCH+ IKL++K+ +REI++
Sbjct: 627 DEEQKAQSLRYHSERQAVAYGLLKVPAGMPIRVMKNLRVCGDCHSAIKLITKITSREIIL 686

Query: 703 RDRTRFHHYKDGVCSCKDYW 722
           RD  RFHH+KDG+CSC+DYW
Sbjct: 687 RDANRFHHFKDGLCSCRDYW 706



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 122/288 (42%), Gaps = 69/288 (23%)

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ- 342
           +V + A ++   RAG +E AR  FD M  +    ++A+I+GY  N+ P  AL LF+ M  
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76

Query: 343 ---------VCGMK-------------------PDKVTMLSVISACAHLGVLDQAQRI-H 373
                    + G+                    P  V+  S++      G+L  A R+ H
Sbjct: 77  RDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFH 136

Query: 374 LYIDKN------AFGGDL---RVN-----------------NAIIDMYAKCGSLESAREV 407
              ++N        GG L   RVN                  A++  Y + G +  AR +
Sbjct: 137 QMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARAL 196

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F+ M +RNV+SWT+MI+ +A +G    A   F  M D     N V++  +L     AG V
Sbjct: 197 FDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDR----NEVSWTAMLVGYIQAGHV 252

Query: 468 DEGREIFASMTNEYNIPPKYEHYGC--MVDLFGRANLLREALELVETM 513
           ++  ++F +M       P +    C  M+  FG+  ++  A  + E M
Sbjct: 253 EDAEDLFNAM-------PDHPVAACNAMMVGFGQHGMVDAAKAMFERM 293


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/565 (37%), Positives = 333/565 (58%), Gaps = 8/565 (1%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+G Y     + DAR +FD++  RD++ W+ MI GY Q+G   +   LFEE  + +V   
Sbjct: 194 LMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV--- 250

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
               + ++ A  + G L     V     D          + +I  YA    MDM + LF+
Sbjct: 251 -FTWTAMVYAYVQDGMLDEARRV----FDEMPQKREMSYNVMIAGYAQYKRMDMGRELFE 305

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
           ++   N+     M+SGY + G +  AR +FD M ++D + W+A+I+GYA+N   +EA+ +
Sbjct: 306 EMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNM 365

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
             EM+  G   ++ T    +SACA +  L+  +++H  + +  +     V NA++ MY K
Sbjct: 366 LVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCK 425

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CG ++ A +VF+ ++ ++++SW +M+  +A HG  R AL  F  M    + P+ +T +GV
Sbjct: 426 CGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGV 485

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L ACSH GL D G E F SM  +Y I P  +HY CM+DL GRA  L EA  L+  MPF P
Sbjct: 486 LSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEP 545

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
           +   WG+L+ A R+HG +EL E AA+ + +++P + G  VLLSN+YA   RW DV ++R 
Sbjct: 546 DAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRL 605

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            M++ G+ K    S +E+ N+++ F   D  H +  +IY  L E+  ++K  GYV     
Sbjct: 606 KMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKL 665

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
            L D+E+EEK+ ++ +HSEKLA+ +G+++      IR++KNLRVCEDCHN IK +SK+  
Sbjct: 666 VLHDVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVG 725

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           R I++RD  R+HH+ +G+CSC+DYW
Sbjct: 726 RLIIVRDSHRYHHFSEGICSCRDYW 750



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 188/372 (50%), Gaps = 31/372 (8%)

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFI-IDNNVALDAHLQSTLITMYANCGCMDMAK 273
           +P  +  +K +S   R G+      V + + + N+V+ +A     +I+ Y       +A+
Sbjct: 30  DPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNA-----MISGYLRNAKFSLAR 84

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
            LFDK+  K+L     M++GY+R  ++ DAR++FD M EKD++ W+AM+SGY  + H  E
Sbjct: 85  DLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDE 144

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
           A  +F+ M       + ++   +++A    G L++A+R  L+  K+ +  +L   N ++ 
Sbjct: 145 ARDVFDRMP----HKNSISWNGLLAAYVRSGRLEEARR--LFESKSDW--ELISCNCLMG 196

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
            Y K   L  AR++F+++  R++ISW +MI+ +A  GD   A   F    +ES   +  T
Sbjct: 197 GYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLF----EESPVRDVFT 252

Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE-HYGCMVDLFGRANLLREALELVET 512
           +  ++YA    G++DE R +F  M      P K E  Y  M+  + +   +    EL E 
Sbjct: 253 WTAMVYAYVQDGMLDEARRVFDEM------PQKREMSYNVMIAGYAQYKRMDMGRELFEE 306

Query: 513 MPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG-ALVLLSNIYAKDKRWQD 571
           MPF PN+  W  +++    +G++      A+ L  + P  D  +   +   YA++  +++
Sbjct: 307 MPF-PNIGSWNIMISGYCQNGDLA----QARNLFDMMPQRDSVSWAAIIAGYAQNGLYEE 361

Query: 572 VGELRKSMKERG 583
              +   MK  G
Sbjct: 362 AMNMLVEMKRDG 373



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 193/390 (49%), Gaps = 32/390 (8%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D F    ++  Y    ++ DAR++FD M  +D+V W+ M+ GY ++G  DE  ++F+ M 
Sbjct: 94  DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP 153

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
             N     +  + +L+A  R+G L   EA   F   ++  L +   + L+  Y     + 
Sbjct: 154 HKN----SISWNGLLAAYVRSGRLE--EARRLFESKSDWELIS--CNCLMGGYVKRNMLG 205

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            A+ LFD++ +++L+    M+SGY++ G +  AR +F++   +D+  W+AM+  Y ++  
Sbjct: 206 DARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGM 265

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLS--VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
             EA ++F+EM      P K  M    +I+  A    +D  + +    ++  F  ++   
Sbjct: 266 LDEARRVFDEM------PQKREMSYNVMIAGYAQYKRMDMGREL---FEEMPF-PNIGSW 315

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           N +I  Y + G L  AR +F+ M +R+ +SW ++I  +A +G    A+    +MK +   
Sbjct: 316 NIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGES 375

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC-----MVDLFGRANLL 503
            N  TF   L AC+    ++ G+++   +     +   YE  GC     +V ++ +   +
Sbjct: 376 LNRSTFCCALSACADIAALELGKQVHGQV-----VRTGYEK-GCLVGNALVGMYCKCGCI 429

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHG 533
            EA ++ + +    ++V W +++A    HG
Sbjct: 430 DEAYDVFQGVQH-KDIVSWNTMLAGYARHG 458



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 152/316 (48%), Gaps = 37/316 (11%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D F  T +V  Y   G + +AR +FD+M  +  + ++VMI GY Q    D    LFEEM 
Sbjct: 249 DVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMP 308

Query: 211 MSNV---------------------------EPDEMVLSKILSACSRAGNLSYGEAVHEF 243
             N+                           + D +  + I++  ++ G   Y EA++  
Sbjct: 309 FPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNG--LYEEAMNML 366

Query: 244 I--IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL----KNLVVSTAMVSGYSRA 297
           +    +  +L+       ++  A+   +++ K +  +V+     K  +V  A+V  Y + 
Sbjct: 367 VEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKC 426

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           G +++A  +F  +  KD++ W+ M++GYA +   ++AL +F  M   G+KPD++TM+ V+
Sbjct: 427 GCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVL 486

Query: 358 SACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRN 415
           SAC+H G+ D+       ++K+     + +    +ID+  + G LE A+ +   M    +
Sbjct: 487 SACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPD 546

Query: 416 VISWTSMINAFAIHGD 431
             +W +++ A  IHG+
Sbjct: 547 AATWGALLGASRIHGN 562



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 1/231 (0%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L  A ++F  +P   S      I   + +   + A+ + ++M  +G +++R +F   L A
Sbjct: 328 LAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSA 387

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            A    L  G QVHG   + G+     V   LVGMY  CG I +A  +F  + ++DIV W
Sbjct: 388 CADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSW 447

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFII 245
           + M+ GY ++G   + L +FE M  + V+PDE+ +  +LSACS  G    G E  H    
Sbjct: 448 NTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNK 507

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           D  +  ++   + +I +    GC++ A+ L   +  +    +   + G SR
Sbjct: 508 DYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASR 558


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/473 (44%), Positives = 305/473 (64%), Gaps = 1/473 (0%)

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
           A D H+QS +++MYA  G +  ++  F ++   ++V  TAMV+  +  G V+ AR +FD 
Sbjct: 146 AADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDG 205

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M ++D + WSAMI+GY      +EAL LF+EM   G    + T++SV++ACA +G LD+ 
Sbjct: 206 MPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRG 265

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + +H Y+        +++  A++DMY+KCG++ +A EVFE M  RNV +WTS ++  A++
Sbjct: 266 KWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMN 325

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G     L  F +M+   I PNGV+F+ VL  CS AGLVDEGR  F SM ++Y + P  EH
Sbjct: 326 GMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEH 384

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           YGCMVDL+GRA  L +A+  +  MP  P+  +WG+L+ A R+H  ++L ++A  +LL ++
Sbjct: 385 YGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIE 444

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
            ++D A V LSNIYA+ + W+ V  +R  MK +G+ K    S IE++ +V+EF    R H
Sbjct: 445 SENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLH 504

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
            + ++I   L E+   L+  GY  +    L D+E+EEK   I  HSEKLAL +GLI   +
Sbjct: 505 PRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPE 564

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           D  IRIVKNLRVC DCH +IKLVSKV+ REIV+RDR RFHH+K G CSC+DYW
Sbjct: 565 DVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 617



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/470 (24%), Positives = 191/470 (40%), Gaps = 94/470 (20%)

Query: 9   KPLTLPTSTAISSCSSLTHMKQTHAQIL---KLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +PL    +T + S +  +H++  HA ++   +L+   H          L +F     + +
Sbjct: 3   RPLLRDPTTLLPSLAEASHLRALHAHLVVSGRLASPSH----------LAAFLASLASSN 52

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
            L YA  +  Q PA      N FIRA++   RP  A   F  +    L  D +S   +++
Sbjct: 53  HLSYARLVLPQRPAT-LLAHNAFIRALARGPRPCLAFAAFRDL---PLPPDHYSLNFLVR 108

Query: 126 AI--------------ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD- 170
           A               A     L+ +  HG   + G  +DP VQ+G++ MY A G +   
Sbjct: 109 AATALVASAAEEKHVSAEVNARLQAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASS 168

Query: 171 ------------------------------ARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
                                         AR +FD M  RD V WS MI GY   G   
Sbjct: 169 RAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSR 228

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
           E L LF+EM  +     E  L  +L+AC++ G L  G+ VH ++    + +   L + L+
Sbjct: 229 EALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALV 288

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
            MY+ CG +  A  +F+ +  +N+   T+ V                             
Sbjct: 289 DMYSKCGAVVTAMEVFESMAERNVYTWTSAV----------------------------- 319

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
             SG A N    E L+LF  M+  G++P+ V+ ++V+  C+  G++D+ +     +DK  
Sbjct: 320 --SGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDKYG 377

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIH 429
                     ++D+Y + G L+ A      M    +   W +++NA  IH
Sbjct: 378 VDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIH 427


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/473 (44%), Positives = 305/473 (64%), Gaps = 1/473 (0%)

Query: 250  ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            A D H+QS +++MYA  G +  ++  F ++   ++V  TAMV+  +  G V+ AR +FD 
Sbjct: 1351 AADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDG 1410

Query: 310  MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
            M ++D + WSAMI+GY      +EAL LF+EM   G    + T++SV++ACA +G LD+ 
Sbjct: 1411 MPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRG 1470

Query: 370  QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
            + +H Y+        +++  A++DMY+KCG++ +A EVFE M  RNV +WTS ++  A++
Sbjct: 1471 KWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMN 1530

Query: 430  GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
            G     L  F +M+   I PNGV+F+ VL  CS AGLVDEGR  F SM ++Y + P  EH
Sbjct: 1531 GMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEH 1589

Query: 490  YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
            YGCMVDL+GRA  L +A+  +  MP  P+  +WG+L+ A R+H  ++L ++A  +LL ++
Sbjct: 1590 YGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIE 1649

Query: 550  PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
             ++D A V LSNIYA+ + W+ V  +R  MK +G+ K    S IE++ +V+EF    R H
Sbjct: 1650 SENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLH 1709

Query: 610  KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
             + ++I   L E+   L+  GY  +    L D+E+EEK   I  HSEKLAL +GLI   +
Sbjct: 1710 PRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPE 1769

Query: 670  DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            D  IRIVKNLRVC DCH +IKLVSKV+ REIV+RDR RFHH+K G CSC+DYW
Sbjct: 1770 DVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 1822



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/470 (24%), Positives = 191/470 (40%), Gaps = 94/470 (20%)

Query: 9    KPLTLPTSTAISSCSSLTHMKQTHAQIL---KLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
            +PL    +T + S +  +H++  HA ++   +L+   H          L +F     + +
Sbjct: 1208 RPLLRDPTTLLPSLAEASHLRALHAHLVVSGRLASPSH----------LAAFLASLASSN 1257

Query: 66   SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
             L YA  +  Q PA      N FIRA++   RP  A   F  +    L  D +S   +++
Sbjct: 1258 HLSYARLVLPQRPAT-LLAHNAFIRALARGPRPCLAFAAFRDL---PLPPDHYSLNFLVR 1313

Query: 126  AI--------------ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD- 170
            A               A     L+ +  HG   + G  +DP VQ+G++ MY A G +   
Sbjct: 1314 AATALVASAAEEKHVSAEVNARLQAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASS 1373

Query: 171  ------------------------------ARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
                                          AR +FD M  RD V WS MI GY   G   
Sbjct: 1374 RAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSR 1433

Query: 201  EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
            E L LF+EM  +     E  L  +L+AC++ G L  G+ VH ++    + +   L + L+
Sbjct: 1434 EALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALV 1493

Query: 261  TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
             MY+ CG +  A  +F+ +  +N+   T+ V                             
Sbjct: 1494 DMYSKCGAVVTAMEVFESMAERNVYTWTSAV----------------------------- 1524

Query: 321  MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
              SG A N    E L+LF  M+  G++P+ V+ ++V+  C+  G++D+ +     +DK  
Sbjct: 1525 --SGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDKYG 1582

Query: 381  FGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
                      ++D+Y + G L+ A      M    +   W +++NA  IH
Sbjct: 1583 VDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIH 1632


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/526 (40%), Positives = 321/526 (61%), Gaps = 6/526 (1%)

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS-----YGEAVHEFIIDNNVALDAHLQS 257
           L LF   +  N      +L+ I +  + AG  +      G  VH   +    A D  +++
Sbjct: 126 LTLFSRFRRRNPHSFTFLLASISNHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVRN 185

Query: 258 TLITMYANCGCMDMAKGLFDKV-LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
            L+  Y   G +   + +FD++  +++++    +++GY RAG +  AR +FD+M  +D I
Sbjct: 186 ALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEI 245

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            WS ++ GY +    + AL +F  M   G++P++  +++ +SA A LG+L+  + +H  +
Sbjct: 246 SWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVV 305

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            ++     + V  A++DMYAKCG +  AREVF+ MRRR+V +W +MI   A HG  R+A+
Sbjct: 306 QRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAV 365

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             F +   E + P  VTF+GVL  CS +GLV EGR  F  +  +Y I P+ EHYGCMVDL
Sbjct: 366 ELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDL 425

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
            GRA L+ EA+EL+E M  AP+ V+WG+++++C+ HG ++L      +L++LDP H G  
Sbjct: 426 LGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYY 485

Query: 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           VLLS IYAK  +W +V E+RK M  RG  K    S +E + +V++FL  D  HK + QIY
Sbjct: 486 VLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIY 545

Query: 617 EKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIV 676
           + L+ +   L  AGYVPD+ S L D+ +EEK   +  HSE+LA+ YG I  +  S IRIV
Sbjct: 546 DTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFIVLEAGSPIRIV 605

Query: 677 KNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KNLRVC DCH F K+V+ V+ REI++RD +RFHH K+G CSC DYW
Sbjct: 606 KNLRVCGDCHEFSKMVTMVFQREIIVRDGSRFHHMKEGKCSCLDYW 651



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 163/380 (42%), Gaps = 68/380 (17%)

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACG------KILD------------------- 170
           G  VH L  K G   D FV+  LV  YG  G      ++ D                   
Sbjct: 165 GSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYV 224

Query: 171 -------ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSK 223
                  AR +FD+M  RD + WS ++ GY +    +  L +F  M    V P++  +  
Sbjct: 225 RAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVT 284

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
            LSA +R G L +G+ VH  +  + + +  ++ + L+ MYA CGC+ +A+ +FD +  ++
Sbjct: 285 ALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRD 344

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           +    AM+ G +  G   DA  +F++ + +                              
Sbjct: 345 VFAWNAMICGLAAHGLGRDAVELFERFISE------------------------------ 374

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
            G+ P  VT + V++ C+  G++ + +R   L ++K     ++     ++D+  + G + 
Sbjct: 375 -GLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVP 433

Query: 403 SAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
            A E+ E M    + + W +++++   HG     +   NK+ +  +DP    +  +L   
Sbjct: 434 EAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIE--LDPTHSGYYVLLSGI 491

Query: 462 -SHAGLVDEGREIFASMTNE 480
            + A   DE RE+   M++ 
Sbjct: 492 YAKANKWDEVREVRKLMSSR 511



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 2/148 (1%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE-GMQVHGLGTKLGFGSDPFVQTGLV 159
           AL VF  M+ +G+  ++ +    L A AR  GLLE G  VH +  + G      V   LV
Sbjct: 263 ALGVFRNMVEQGVRPNQAAVVTALSAAARL-GLLEHGKFVHNVVQRSGMPVCMNVGAALV 321

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
            MY  CG +  AR +FD M  RD+  W+ MI G   +GL  + + LFE      + P  +
Sbjct: 322 DMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNV 381

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDN 247
               +L+ CSR+G ++ G    + I++ 
Sbjct: 382 TFVGVLNGCSRSGLVAEGRRYFKLIVEK 409


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/612 (37%), Positives = 368/612 (60%), Gaps = 20/612 (3%)

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG---MYGACGKILDARLMF 175
           S  P++  + + + L E  Q+H    K    +  F  + L+    + G  G +  A  +F
Sbjct: 5   STNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVF 64

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK--MSNVEPDEMVLSKILSACSRAGN 233
            ++ + +   +  +I G+       E L L+  M   ++     E  +  +L AC +   
Sbjct: 65  SRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLA 124

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
              G  VH  ++  ++  D  + ++++ MY + G +++A+ +FD++  +++V   +M++G
Sbjct: 125 FDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAG 184

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           Y +AG++E A  +FD+M E+DL+  +AMI GY +            EM   G++PD   +
Sbjct: 185 YLKAGEIELASELFDEMPERDLVSCNAMIDGYGK------------EMLSLGLRPDGPAI 232

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFG-GDLRVNNAIIDMYAKCGSLESAREVFERM- 411
           +SV+SA A LG +++ + +H Y+  N        + +A+IDMY+KCG +E+A  VF  + 
Sbjct: 233 VSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSIS 292

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471
            RRN+  W SMI+  AIHG AR AL  F +M+   I+PN +TF+G+L  CSH GLV+EG+
Sbjct: 293 HRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQ 352

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
             F SM  +Y I P+ +HYGCM+DLFGRA  L +AL +++ MPF  +++ W ++++A   
Sbjct: 353 FYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMK 412

Query: 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACS 591
           HG IE+ + AA + ++L PD   + VLLSNIYAK  RW DV ++R  M++RG+ K   CS
Sbjct: 413 HGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCS 472

Query: 592 RIEMNNEVYEFLTA-DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
            + +N +V+EFL   +     + Q+  K+ EV+S LK  GY PD+   L+D+EDE K  +
Sbjct: 473 SMLVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESL 532

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           +  HSEK+A+ +GLI   K + I IVKNLRVC DCH F+KLVSKVY R+I++RD+ RFHH
Sbjct: 533 LNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHH 592

Query: 711 YKDGVCSCKDYW 722
           +++G CSC +YW
Sbjct: 593 FENGCCSCNEYW 604



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 210/448 (46%), Gaps = 68/448 (15%)

Query: 12  TLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYAL 71
           T P  + +  C SL  ++Q HAQ++K +  +H          L +F   +     L YA 
Sbjct: 6   TNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQ----FTVSRLIAFCSLSGVSGGLDYAS 61

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML---NEGLTIDRFSFPPILKAIA 128
           S+FS+I  P S +    I+  S +  P  +L ++ +ML   N    ++ FS P +LKA  
Sbjct: 62  SVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVE-FSIPSVLKACG 120

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
           +     EG QVHG   K     DPFV   +V MY   G+I  AR +FD+M  RD+V W+ 
Sbjct: 121 KLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNS 180

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSN-------------------VEPDEMVLSKILSACS 229
           MI GY + G  +    LF+EM   +                   + PD   +  +LSA +
Sbjct: 181 MIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIA 240

Query: 230 RAGNLSYGEAVHEFIIDNNVALDA-HLQSTLITMYANCGCMDMAKGLFDKVL-LKNLVVS 287
             G +  G+ +H ++  N + L +  + S LI MY+ CG ++ A  +F  +   +N+   
Sbjct: 241 DLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDW 300

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
            +M+SG +                          I G A     +EAL +F EM+   ++
Sbjct: 301 NSMISGLA--------------------------IHGLA-----REALDIFVEMERMDIE 329

Query: 348 PDKVTMLSVISACAHLGVLDQAQ----RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
           P+++T L ++S C+H G++++ Q     +H   +K      ++    +ID++ + G LE 
Sbjct: 330 PNEITFLGLLSTCSHGGLVEEGQFYFESMH---EKYKIVPRIQHYGCMIDLFGRAGRLED 386

Query: 404 AREVFERMR-RRNVISWTSMINAFAIHG 430
           A  V + M    ++++W ++++A   HG
Sbjct: 387 ALGVIQNMPFEADLLAWKAILSASMKHG 414


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/607 (36%), Positives = 355/607 (58%), Gaps = 34/607 (5%)

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           ++  IL++   +  +  G Q+H      G G D  + T LV +Y +CG +  AR +FD+M
Sbjct: 65  NYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEM 124

Query: 179 SYR-DIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSY 236
             + ++  W+V+I  Y ++G  +  + L+ EM    ++EPD      +L AC+   +L  
Sbjct: 125 PNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGA 184

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G  VH+ ++  + A D  + + LI MYA CGC                            
Sbjct: 185 GREVHDRVMRTSWAADVFVCAGLIDMYAKCGC---------------------------- 216

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
              V++A  +FD    +D + W++MI+   +N  P EAL L   M   G+ P  VT++S 
Sbjct: 217 ---VDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSA 273

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           ISA A  G L + + +H Y  +  FG   ++  +++DMYAK G +  AR +F+++  R +
Sbjct: 274 ISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHREL 333

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           ISW +MI  F +HG A +A   F +M++E+ + P+ +TF+GVL AC+H G+V E +E+F 
Sbjct: 334 ISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFD 393

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
            M   Y+I P  +HY C+VD+ G +   +EA ++++ M   P+  IWG+L+  C++H  +
Sbjct: 394 LMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNV 453

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           ELAE A  +L++L+P+  G  VLLSNIYA+  +W++   +RK M  RG+ K  ACS IE+
Sbjct: 454 ELAELALHKLIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIEL 513

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
             + + FL  D SH ++D+IYE+L  +   +   GYVPD  S   ++ED+EKR ++  HS
Sbjct: 514 KGKSHGFLVGDASHPRSDEIYEELERLEGLISQTGYVPDTTSVFHNVEDDEKRNMVRGHS 573

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           E+LA+ +GLIS+   + + + KNLRVCEDCH  IKL+S++  REI+IRD  R+HH+ +G 
Sbjct: 574 ERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGE 633

Query: 716 CSCKDYW 722
           CSCKD+W
Sbjct: 634 CSCKDHW 640



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 183/399 (45%), Gaps = 36/399 (9%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
           N  IRA +     + A++++ +ML  G +  D F++PP+LKA A    L  G +VH    
Sbjct: 134 NVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVM 193

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           +  + +D FV  GL+ MY  CG + +A  +FD  + RD V W+ MI    QNG   E L 
Sbjct: 194 RTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALA 253

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           L   M    + P  + L   +SA + AG L  G  +H +           L+++L+ MYA
Sbjct: 254 LCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYA 313

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
             G + +A+ LFD++  + L+   AM+ G+   G  + A  +F +M              
Sbjct: 314 KSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRM-------------- 359

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH-LYIDKNAFGG 383
                         NE QV    PD +T + V+SAC H G++ +A+ +  L +   +   
Sbjct: 360 -------------RNEAQV---MPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKP 403

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKM 442
            ++    ++D+    G  + A +V + M  + +   W +++N   IH +   A +  +K+
Sbjct: 404 MVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKL 463

Query: 443 KD-ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
            + E  D      +  +YA   +G  +E   +   MTN 
Sbjct: 464 IELEPEDAGNYVLLSNIYA--QSGKWEEAARVRKLMTNR 500



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 136/284 (47%), Gaps = 6/284 (2%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++F       + V N  I A   + RP  AL +   M  EG+     +    + A A 
Sbjct: 220 AWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAAD 279

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           A  L  G ++HG G + GFGS   ++T L+ MY   G +  AR++FD++ +R+++ W+ M
Sbjct: 280 AGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAM 339

Query: 190 IDGYFQNGLFDEVLNLFEEMK-MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID-N 247
           I G+  +G  D    LF  M+  + V PD +    +LSAC+  G +   + V + ++   
Sbjct: 340 ICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVY 399

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLI 306
           ++       + L+ +  + G    A  +   +L+K +  +  A+++G      VE A L 
Sbjct: 400 SIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELA 459

Query: 307 FDQMVE---KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
             +++E   +D   +  + + YA++   +EA ++   M   G+K
Sbjct: 460 LHKLIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTNRGLK 503


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/514 (40%), Positives = 324/514 (63%), Gaps = 4/514 (0%)

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           +K      D  V + ++ A ++AG      A      D     D  L + ++  Y   G 
Sbjct: 66  LKSGFAAADLFVRTALVEAYAKAGRADLARAA----FDEAPRRDVFLCNVMLAAYVTRGE 121

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           +  A+ +FD +  +++V    M+ GY+  G+V+ AR +F+ M ++D   WS+M+S Y + 
Sbjct: 122 VAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKG 181

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
              ++AL+L+ EM+   + PD  TM+SV+SAC+ +G L     +H +++ N    D+++ 
Sbjct: 182 RRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLG 241

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
            A+IDMYAKCG +E++  VF  M  ++V++W+SMI   A HG   +AL  F++M  E + 
Sbjct: 242 TALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQ 301

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
           PN VTFIGVL +C+H GLV +G++ F+SM+  + + PK +HYGCMVDL GR+  + EA +
Sbjct: 302 PNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQ 361

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
           L+  MPF P+ VIW +L+ ACR++  +E+AE A  +L  LDP  DG  VLLSNIYA+   
Sbjct: 362 LIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANS 421

Query: 569 WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
           W+ V E+R++++   I +    S IE  N ++EF++ DRSH ++ +IY+ L E++  L+ 
Sbjct: 422 WEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQ 481

Query: 629 AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
           AGY P     L D++++ K   +  HSEKLA+ +GL+++   S +RI KNLR CEDCH+ 
Sbjct: 482 AGYKPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHSA 541

Query: 689 IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           IKL++ +Y R+++IRDR RFHH+ +G CSCKDYW
Sbjct: 542 IKLIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 150/340 (44%), Gaps = 78/340 (22%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD---------- 200
           D F+   ++  Y   G++ +AR +FD M  RD+V W+ MI GY  NG  D          
Sbjct: 105 DVFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMD 164

Query: 201 ---------------------EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
                                + L L+ EM+ + V PD   +  +LSACS  G L+ G  
Sbjct: 165 DRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAE 224

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           VH+F+  N V LD  L + LI MYA C                               G 
Sbjct: 225 VHQFVESNGVELDVKLGTALIDMYAKC-------------------------------GD 253

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           +E++  +F  M  KD++ WS+MI G A +    +AL LF+ M   G++P++VT + V+ +
Sbjct: 254 IENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLIS 313

Query: 360 CAHLGVLDQAQR-------IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           C HLG++   ++       +H    K    G       ++D+  + G +E A+++   M 
Sbjct: 314 CTHLGLVSDGKKYFSSMSVVHGVTPKVQHYG------CMVDLLGRSGHIEEAKQLIRDMP 367

Query: 413 -RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
              + + W +++ A  I+ +   A     K++   +DP+ 
Sbjct: 368 FEPDAVIWRALLGACRIYKNVEVAEEAMAKLR--VLDPHA 405



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 142/359 (39%), Gaps = 85/359 (23%)

Query: 91  AISWS---------HRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG 141
           A SWS          R K AL+++ +M    +  D  +   +L A +    L  G +VH 
Sbjct: 168 AFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQ 227

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201
                G   D  + T L+ MY  CG I ++  +F  M  +D++ WS MI G   +G   +
Sbjct: 228 FVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHD 287

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
            L+LF  M    ++P+E+    +L +C+  G +S G+   ++    +V    H  +  + 
Sbjct: 288 ALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGK---KYFSSMSV---VHGVTPKVQ 341

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR-LIFDQMVEKDLICWSA 320
            Y   GC                     MV    R+G +E+A+ LI D   E D + W A
Sbjct: 342 HY---GC---------------------MVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRA 377

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           ++           A +++  ++V               A A L VLD     H  +  N 
Sbjct: 378 LLG----------ACRIYKNVEVAE------------EAMAKLRVLDPHADGHYVLLSN- 414

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--------RNVISWTSMINAFAIHGD 431
                        +YA+  S E   E+   +RR        R+ I W + I+ F I GD
Sbjct: 415 -------------IYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEF-ISGD 459


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/630 (36%), Positives = 361/630 (57%), Gaps = 7/630 (1%)

Query: 2   STLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           + L +   P        I  C SL  +K  HAQI+   H   +Q   L KL+ +S  L  
Sbjct: 26  TILQELKSPTHQTLHYLIDQCISLKQLKHVHAQIIL--HGLATQVLTLGKLVSSSVQL-- 81

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
                L YA  +F QIP P   + N  I+  S S  P  +L ++ +M+ +G+  ++F+ P
Sbjct: 82  ---RDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIP 138

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
            +LKA A       G+ VH    KLG GS   VQ  ++ +Y ACG I  AR +FD +S R
Sbjct: 139 FVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISER 198

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
            +V W+ MI+GY + G  +E + +F EM+   +EPD   L  +LS  ++ GN   G  VH
Sbjct: 199 TLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVH 258

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
             ++   + +D+ + + L+ MYA CG +  AK +FD++L K++V  T M++ Y+  G ++
Sbjct: 259 LHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLID 318

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
            A   F+QM  K+++ W+++I  + +     EA+ LF  M   G+  +  T+++++S+C+
Sbjct: 319 CALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCS 378

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
           H+G L   ++ H YI  N       + NAIIDMYAKCG+L++A +VF  M  +N +SW  
Sbjct: 379 HMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNV 438

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           +I A A+HG  + A+  F KM+   + P+ +TF G+L ACSH+GLVD G+  F  M   +
Sbjct: 439 IIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTF 498

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
            I P  EHY CMVDL GR  LL EA+ L++ MP  P+VV+W +L+ ACR +G + + +  
Sbjct: 499 GISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQI 558

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
            KQLL+L   + G  VLLSN+Y++ +RW D+  + K + + GI K RA S IE++   Y+
Sbjct: 559 MKQLLELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAISFIEIDGCCYQ 618

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGY 631
           F+  D+ H  +  IY  L +++  LK AGY
Sbjct: 619 FMVDDKRHGASTSIYSMLGQLMDHLKSAGY 648


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/633 (34%), Positives = 376/633 (59%), Gaps = 45/633 (7%)

Query: 3   TLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT 62
           T+  P   L L     I +C+++  +KQ HA+ +  S S+      ++  ++ SF     
Sbjct: 2   TIQTPKSVLAL-----IETCTNIQQLKQIHAKSIISSLSY---TQFIITKIINSF----L 49

Query: 63  TPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLN-EGLTIDRFSFP 121
           + + L YA  +F+Q   P   + N  IRA S S  P  A+ ++ KM   + +  D++++P
Sbjct: 50  SHACLDYATQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYP 109

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
            + KA A    + +G +VHG+  ++G+  D F+Q+ L+  Y  CG+I +A+ +FD+   +
Sbjct: 110 FVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAK 169

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           D+V W+ +I GY + G+  +   +F+EM ++  V P+E  +  ++ AC  + NL  G A+
Sbjct: 170 DVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAI 229

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H +++                               D VL + + +  A+++ Y + G +
Sbjct: 230 HGYMMK------------------------------DMVLREGVKLEAALINLYVKCGYL 259

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
           + AR +FD++ EK+ + W+++I GY +     E ++L  EM +  +KPD+ T+  V+SAC
Sbjct: 260 DGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSAC 319

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           A +G  +    +H + +K     D+ +  A+IDMYAKCG + +AR+VF++M  RNV +W 
Sbjct: 320 AQMGAFNLGNWVHRFAEKKGIW-DVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWN 378

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           ++++ +A HG A +A+  F++M++    P+ +TF+ VL+AC+H+GLV+ G++ F  M   
Sbjct: 379 AILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQY 438

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
           Y IPP+ EHYGCMVDL GRA LL+EA EL++ M   PNVV+WG+L++AC +HG IE+ E+
Sbjct: 439 YKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNIEIGEW 498

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
           AA  +++L+    G+ V+L+N+YA  +R+  V  +R+ M E+GI K   CS IE+ + V+
Sbjct: 499 AAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCSMIEIGDVVH 558

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVP 633
           EF+ AD+ H ++++IY  L+E+  +LK AGYVP
Sbjct: 559 EFVVADKMHPRSEEIYSVLDELSKKLKMAGYVP 591


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/653 (34%), Positives = 359/653 (54%), Gaps = 55/653 (8%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F Q+P          +     S     AL++  +M   G+ +   +   ++        
Sbjct: 145 VFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLD 204

Query: 133 LLEGMQVHGLGTKLGFGSDPF---VQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           +  G  VHG   +   G +     + T L+ MY   G +  A+ +FD++S R +V W+VM
Sbjct: 205 MKSGRAVHGYIVR-NVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVM 263

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G  ++   DE    F  M    + P+E+ L  +++ C   G L  G+  H +++ N  
Sbjct: 264 IAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGF 323

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            +                               +L + TA++  Y + GQV  AR +F+ 
Sbjct: 324 GM-------------------------------SLALVTALIDMYGKCGQVGYARALFNG 352

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           + +KD+  WS +IS YA  +   +   LF EM    +KP+ VTM+S++S CA  G LD  
Sbjct: 353 VKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLG 412

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           +  H YI+++    D+ +  A+I+MYAKCG +  AR +F    +R++  W +M+  F++H
Sbjct: 413 KWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMH 472

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G  + AL  F++M+   ++PN +TF+ + +ACSH+GL+                    EH
Sbjct: 473 GCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLM--------------------EH 512

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           YGC+VDL GRA  L EA  ++E MP  PN +IWG+L+AAC++H  + L E AA+++L+LD
Sbjct: 513 YGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELD 572

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P + G  VL SNIYA  KRW DV  +R++M   G+ KE   S IE++  V+ F + D++ 
Sbjct: 573 PQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKSGDKAC 632

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
            QT ++YE + E+  +L+ +GY P+  + L+++++EEK   + +HSEKLA  +GLIS+  
Sbjct: 633 TQTTKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLATAFGLISTAP 692

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + IRIVKNLR+C+DCH   KL+SK+Y R I++RDR RFHH+ +G CSC  YW
Sbjct: 693 GTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 745



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 146/523 (27%), Positives = 254/523 (48%), Gaps = 62/523 (11%)

Query: 16  STAISSCSSLTHM--KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           S + S CS  +H+  +QTH       H+H          + T F  P             
Sbjct: 8   SPSFSGCSGHSHLNLQQTHQL-----HAH---------FIKTQFHNPH----------PF 43

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML-NEGLTIDRFSFPPILKAIARAEG 132
           FSQ    P    N  I + + +H P+ +   +L M  N+   +D F  P +LKA A+A  
Sbjct: 44  FSQSHFTPEANYNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASS 103

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
              G ++HG   K GF SD FV   L+ MY  CG ++ ARL+FD+M  RD+V W+ M+  
Sbjct: 104 GDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGC 163

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN--NVA 250
           Y ++  F E L L  EM+   V+   + L  +++      ++  G AVH +I+ N  +  
Sbjct: 164 YVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEK 223

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
           ++  + + LI MY   GC+  A+ LFD++  +++V  T M++G  R+ ++++    F++M
Sbjct: 224 MEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRM 283

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
           +E+                      KLF         P+++T+LS+I+ C  +G LD  +
Sbjct: 284 LEE----------------------KLF---------PNEITLLSLITECGFVGTLDLGK 312

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
             H Y+ +N FG  L +  A+IDMY KCG +  AR +F  +++++V  W+ +I+A+A   
Sbjct: 313 WFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVS 372

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
                   F +M +  + PN VT + +L  C+ AG +D G+   A + N + +       
Sbjct: 373 CMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYI-NRHGLEVDVILE 431

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
             +++++ +   +  A  L        ++ +W ++MA   +HG
Sbjct: 432 TALINMYAKCGDVTIARSLFNE-AMQRDIRMWNTMMAGFSMHG 473



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           YA ++F+ +     ++ +  I A +          +F++MLN  +  +  +   +L   A
Sbjct: 345 YARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCA 404

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
            A  L  G   H    + G   D  ++T L+ MY  CG +  AR +F++   RDI  W+ 
Sbjct: 405 EAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNT 464

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
           M+ G+  +G   E L LF EM+   VEP+++    I  ACS +G
Sbjct: 465 MMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSG 508


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/439 (46%), Positives = 291/439 (66%), Gaps = 1/439 (0%)

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
           V+   M +  +  G+ +DA  +F +M  +D++ W++M++ YA+   P EAL LF++M+  
Sbjct: 149 VLKVWMHNNKNTFGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAV 208

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
           G+KP + T++S++SACAHLG LD+   +H YI+ N    +  V  A++DMYAKCG +  A
Sbjct: 209 GVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLA 268

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
            +VF  M  ++V++W ++I   AIHG  + A   F +MK+  ++PN +TF+ +L ACSHA
Sbjct: 269 TQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHA 328

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGS 524
           G+VDEG+++   M++ Y I PK EHYGC++DL  RA LL EA+EL+ TMP  PN    G+
Sbjct: 329 GMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGA 388

Query: 525 LMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584
           L+  CR+HG  EL E   K+L+ L P H G  +LLSNIYA  K+W D  ++R  MK  GI
Sbjct: 389 LLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGI 448

Query: 585 LKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPA-GYVPDIHSALVDLE 643
            K    S IE+   V+ F+  D SH ++++IYEKLNE+ + LK A G+  D    L+D+E
Sbjct: 449 SKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDME 508

Query: 644 DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIR 703
           +E+K   +  HSEKLA+ YGL+       IRIVKNLRVC DCH+  KL+SKVY REI++R
Sbjct: 509 EEDKEHALPVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVR 568

Query: 704 DRTRFHHYKDGVCSCKDYW 722
           DR RFHH++DG CSC D+W
Sbjct: 569 DRNRFHHFEDGECSCLDFW 587



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 144/269 (53%), Gaps = 35/269 (13%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           GK  DA  +F +M  RD+V W+ M+  Y Q G  +E L LF++M+   V+P E  +  +L
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
           SAC+  G L  G  +H +I DN + +++ + + L+ MYA CG + +A  +F+ +  K+++
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 281

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
               +++G +  G V++A+                               +LF EM+  G
Sbjct: 282 AWNTIIAGMAIHGHVKEAQ-------------------------------RLFKEMKEAG 310

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLES 403
           ++P+ +T ++++SAC+H G++D+ Q++ L    +++G + +V +   +ID+ A+ G LE 
Sbjct: 311 VEPNDITFVAMLSACSHAGMVDEGQKL-LDCMSSSYGIEPKVEHYGCVIDLLARAGLLEE 369

Query: 404 AREVFERM-RRRNVISWTSMINAFAIHGD 431
           A E+   M    N  +  +++    IHG+
Sbjct: 370 AMELIGTMPMEPNPCALGALLGGCRIHGN 398



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 137/299 (45%), Gaps = 19/299 (6%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +FS++P       N  +   +   +P  AL +F +M   G+     +   +L A A 
Sbjct: 167 AFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 226

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L +G+ +H          +  V T LV MY  CGKI  A  +F+ M  +D++ W+ +
Sbjct: 227 LGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTI 286

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G   +G   E   LF+EMK + VEP+++    +LSACS AG +  G+ + +  + ++ 
Sbjct: 287 IAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLD-CMSSSY 345

Query: 250 ALDAHLQ--STLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLI 306
            ++  ++    +I + A  G ++ A  L   + ++ N     A++ G    G  E     
Sbjct: 346 GIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFE----- 400

Query: 307 FDQMVEKDLICWSAMISG--------YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
             +MV K LI      SG        YA      +A K+ N M+V G+   KV  +SVI
Sbjct: 401 LGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGI--SKVPGVSVI 457



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 115/269 (42%), Gaps = 42/269 (15%)

Query: 315 LICWSAMISGYAENNHP---------------------QEALKLFNEMQVCGMKPDKVTM 353
           L+  SA ISG  EN  P                      +  K+F   +  G K  K   
Sbjct: 74  LLALSAGISGPPENAPPISSSPASGANGRKRFRTKFSQGQKKKMFEFAERVGWKMQKRDE 133

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
             V   C  +GV     ++ ++ +KN F                 G  + A  +F  M  
Sbjct: 134 ELVAEFCNEVGVDKGVLKVWMHNNKNTF-----------------GKRDDAFGLFSEMPC 176

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           R+V+SW SM+  +A  G    AL  F++M+   + P   T + +L AC+H G +D+G  +
Sbjct: 177 RDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHL 236

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
             +  N+  I         +VD++ +   +  A ++   M  + +V+ W +++A   +HG
Sbjct: 237 H-TYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAME-SKDVLAWNTIIAGMAIHG 294

Query: 534 EIELAEFAAKQLLQ--LDPDHDGALVLLS 560
            ++ A+   K++ +  ++P+    + +LS
Sbjct: 295 HVKEAQRLFKEMKEAGVEPNDITFVAMLS 323


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/667 (35%), Positives = 362/667 (54%), Gaps = 59/667 (8%)

Query: 80  PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE---- 135
           PPS      IR  +   +  HA+ +FL+M        R S P  L A  ++   L     
Sbjct: 12  PPSWAYQ--IRMAASQGQFLHAISLFLQM--RASVAPRSSVPASLPAALKSCAGLGLCTL 67

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGM----------YGACGKILDA----------RLMF 175
              +H L  + G  +D F    L+ +          +G  G   +           R +F
Sbjct: 68  AASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVF 127

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           D+M  RD V W+ +I G  ++    E L++  EM      PD   LS +L   +   ++ 
Sbjct: 128 DEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIK 187

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G  VH + I N    D  + S+LI MYANC  MD                       YS
Sbjct: 188 RGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMD-----------------------YS 224

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
                     +FD   + D + W++M++GYA+N   +EAL +F  M   G++P  VT  S
Sbjct: 225 MK--------VFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSS 276

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           +I A  +L +L   +++H Y+ +  F  ++ +++++IDMY KCG+++ AR VF  ++  +
Sbjct: 277 LIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPD 336

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           ++SWT+MI  +A+HG    A + F +M+  ++ PN +TF+ VL ACSHAGLVD G + F 
Sbjct: 337 IVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFN 396

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           SM+N+Y   P  EH   + D  GRA  L EA   +  M   P   +W +L+ ACRVH   
Sbjct: 397 SMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNT 456

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
            LAE  AK++ +L+P   G+ V+LSN+Y+   RW +  +LRKSM+ +G+ KE ACS IE+
Sbjct: 457 VLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEV 516

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
            N+++ F+  D+SH   D+I + LN    ++   GYVP++   L D+E+E+KREV+  HS
Sbjct: 517 KNKLHVFIAHDKSHPWYDRIIDALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHS 576

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ +G+IS+   + IR++KNLRVC DCH   K +SK+ AREIV+RD  RFH +KDG 
Sbjct: 577 EKLAIVFGIISTPPGTTIRVMKNLRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGN 636

Query: 716 CSCKDYW 722
           CSC D+W
Sbjct: 637 CSCGDFW 643



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 199/446 (44%), Gaps = 51/446 (11%)

Query: 2   STLSQPTKPLTLPTSTAISSCSSL---THMKQTHAQILKLSH--SHHSQNSLL-LKLLLT 55
           S   + + P +LP   A+ SC+ L   T     HA  ++        + N+LL L + L 
Sbjct: 41  SVAPRSSVPASLPA--ALKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLP 98

Query: 56  SFSLP--TTTPS-------SLYYAL-SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVF 105
            F  P  T  PS       + Y ++  +F ++    +   N  I   +   R + AL + 
Sbjct: 99  GFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMV 158

Query: 106 LKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC 165
            +M  +G   D F+   +L   A    +  GM VHG   K GF +D FV + L+ MY  C
Sbjct: 159 REMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANC 218

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
            ++  +  +FD  S  D V W+ M+ GY QNG  +E L +F  M  + V P  +  S ++
Sbjct: 219 TQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLI 278

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
            A      L  G+ +H ++I      +  + S+LI MY  CG +D+A+ +F+ +   ++V
Sbjct: 279 PAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIV 338

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
             TAM+ GY+  G                                  EA  LF  M++  
Sbjct: 339 SWTAMIMGYALHGPT-------------------------------TEAFVLFERMELGN 367

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
           +KP+ +T L+V++AC+H G++D   +  +   ++  F   L    A+ D   + G L+ A
Sbjct: 368 VKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEA 427

Query: 405 REVFERMRRRNVIS-WTSMINAFAIH 429
                 M+ +   S W++++ A  +H
Sbjct: 428 YNFISEMKIKPTSSVWSTLLRACRVH 453


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/725 (35%), Positives = 380/725 (52%), Gaps = 48/725 (6%)

Query: 6   QPTKPLTL--PTSTAIS---SCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
            P  P++   PT T +S      +L    Q +AQIL         N+L   LL       
Sbjct: 4   NPFPPISSRNPTKTLLSLFRFTKTLASNHQLNAQIL--------VNALHRSLLFGPMIFG 55

Query: 61  TTTP-SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
                 SL+ A   F+ I        N  + + S +      L++F +ML EG  +D F+
Sbjct: 56  AYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFN 115

Query: 120 FPPILKAIARAEGLLEGMQV-HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
               +KA      L +G ++ H L  KL    DP+V   L+ +Y   G + +A  +F+++
Sbjct: 116 LVFAVKA-CFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEV 174

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
             ++ V W VMI G+        V  LF  M+ S  E D  V+  ++ AC        G+
Sbjct: 175 PLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGK 234

Query: 239 AVHEFIIDNN-VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
             H   I  N +  +  LQ++L+ MY  C                               
Sbjct: 235 TFHGLCIKKNFIDSNFFLQTSLVDMYMKC------------------------------- 263

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           G ++ A  +F+++  +D++ WSA+I+G+A N    E++ +F +M    + P+ VT  S++
Sbjct: 264 GFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIV 323

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
            AC+ LG L Q + +H Y+ +N    D++   + IDMYAKCG + +A  VF ++  +NV 
Sbjct: 324 LACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVF 383

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
           SW++MIN F +HG    AL  F +M+  +  PN VTF+ VL ACSH+G ++EG   F SM
Sbjct: 384 SWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSM 443

Query: 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537
           + +Y I P  EHY CMVDL GRA  + EAL  +  MP  P    WG+L+ ACR+H   EL
Sbjct: 444 SRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAEL 503

Query: 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNN 597
           AE  AK+LL L+ D  G  V+LSNIYA    W+ V + R  M E+GI K    + IE+  
Sbjct: 504 AEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEE 563

Query: 598 EVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEK 657
           ++Y F + DR   +  QI    N +   ++  GYVPD+   L D++DE K+EV+  HSEK
Sbjct: 564 KLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVKQEVLCGHSEK 623

Query: 658 LALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCS 717
           LA+ +GL++S +   IRI KN+RVC DCH   K +S +  R+I++RD  RFHH +DGVCS
Sbjct: 624 LAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCS 683

Query: 718 CKDYW 722
           C DYW
Sbjct: 684 CGDYW 688


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/612 (38%), Positives = 353/612 (57%), Gaps = 42/612 (6%)

Query: 110 NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF-GSDP--FVQTGLVGMYGACG 166
           + GL  D  ++  ++K       + EG   + +   L F G  P  F+   L+ MY    
Sbjct: 6   SHGLWADSATYSELIKCCLSHRAVHEG---NLICRHLYFNGHQPMMFLVNVLINMYVKFN 62

Query: 167 KILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS 226
            + DA  +FD+M  R+++ W+ MI  Y +  +  + L L   M    V P+    S +L 
Sbjct: 63  LLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLR 122

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV 286
           AC+    +S    +H  II   +  D +++S LI ++A                      
Sbjct: 123 ACN---GMSDVRMLHCGIIKEGLESDVYVRSALIDVFA---------------------- 157

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346
                    + G+ EDA  +FD+MV  D I W+++I G+A+N+    AL+LF  M+  G 
Sbjct: 158 ---------KLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGF 208

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE 406
             ++ T+ SV+ AC  L +L+   + H++I K  +  DL +NNA++DMY KCGSLE AR 
Sbjct: 209 IAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDARR 266

Query: 407 VFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL 466
           VF +M+ R+VI+W++MI+  A +G ++ AL  F  MK     PN +T +GVL+ACSHAGL
Sbjct: 267 VFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGL 326

Query: 467 VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLM 526
           +++G   F SM   Y I P  EHYGCM+DL G+A  L +A++L+  M   P+ V W +L+
Sbjct: 327 LEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 386

Query: 527 AACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILK 586
            ACRV   + LAE+AAK+++ LDP+  G   +LSNIYA  ++W  V E+RK M++ GI K
Sbjct: 387 GACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKK 446

Query: 587 ERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEE 646
           E  CS IE+N +++ F+  D SH Q  ++ +KLN++I  L   GYVP+ +  L DLE E+
Sbjct: 447 EPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRLIGIGYVPETNFVLQDLEGEQ 506

Query: 647 KREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRT 706
             + +  HSEKLAL +GL++   +  IRI KNLR+C DCH F KL SK+  R IVIRD  
Sbjct: 507 MEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLRICGDCHVFCKLASKLENRNIVIRDPI 566

Query: 707 RFHHYKDGVCSC 718
           R+HH++DG CSC
Sbjct: 567 RYHHFQDGKCSC 578



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 183/400 (45%), Gaps = 45/400 (11%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F Q+P          I A S     + AL++ + ML +G+  + +++  +L+A   
Sbjct: 67  AHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRA--- 123

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
             G+ +   +H    K G  SD +V++ L+ ++   G+  DA  +FD+M   D + W+ +
Sbjct: 124 CNGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSI 183

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G+ QN   D  L LF+ MK +    ++  L+ +L AC+    L  G   H  I+  + 
Sbjct: 184 IGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQ 243

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             D  L + L+ MY  CG ++ A+ +F+++  ++++  + M+SG                
Sbjct: 244 --DLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISG---------------- 285

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                           A+N + QEALKLF  M+  G KP+ +T++ V+ AC+H G+L+  
Sbjct: 286 ---------------LAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDG 330

Query: 370 QRIHLYIDK-NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFA 427
                 + K             +ID+  K G L+ A ++   M    + ++W +++ A  
Sbjct: 331 WYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACR 390

Query: 428 IHGDARN-ALIFFNKMKDESIDPNGV---TFIGVLYACSH 463
           +    RN  L  +   K  ++DP      T +  +YA S 
Sbjct: 391 VQ---RNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQ 427



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 111/234 (47%), Gaps = 9/234 (3%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTT 63
           L    +P     S+ + +C+ ++ ++  H  I+K       ++ + ++  L         
Sbjct: 106 LRDGVRPNVYTYSSVLRACNGMSDVRMLHCGIIK----EGLESDVYVRSALIDVFAKLGE 161

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
           P     ALS+F ++    + V N  I   + + R   AL++F +M   G   ++ +   +
Sbjct: 162 PED---ALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSV 218

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L+A      L  GMQ H    K  +  D  +   LV MY  CG + DAR +F++M  RD+
Sbjct: 219 LRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDV 276

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           + WS MI G  QNG   E L LFE MK S  +P+ + +  +L ACS AG L  G
Sbjct: 277 ITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDG 330



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 124/286 (43%), Gaps = 47/286 (16%)

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI--HLYIDKNAFGGDLRVNNAIIDMY 395
            + +Q  G+  D  T   +I  C     + +   I  HLY   N     + + N +I+MY
Sbjct: 1   MDSLQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYF--NGHQPMMFLVNVLINMY 58

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFA---IHGDARNALIFFNKMKDESIDPNGV 452
            K   L  A ++F++M +RNVISWT+MI+A++   IH  A   L+    M  + + PN  
Sbjct: 59  VKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVL---MLRDGVRPNVY 115

Query: 453 TFIGVLYACS--------HAGLVDEGRE-----------IFASMTNEYNIPPKYEH---- 489
           T+  VL AC+        H G++ EG E           +FA +    +    ++     
Sbjct: 116 TYSSVLRACNGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTG 175

Query: 490 ----YGCMVDLFGRANLLREALELVETMP---FAPNVVIWGSLMAACRVHGEIELAEFAA 542
               +  ++  F + +    ALEL + M    F        S++ AC     +EL   A 
Sbjct: 176 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH 235

Query: 543 KQLLQLDPDHDGALVL---LSNIYAKDKRWQDVGELRKSMKERGIL 585
             +++ D D    L+L   L ++Y K    +D   +   MKER ++
Sbjct: 236 VHIVKYDQD----LILNNALVDMYCKCGSLEDARRVFNQMKERDVI 277


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/622 (37%), Positives = 360/622 (57%), Gaps = 37/622 (5%)

Query: 106 LKMLNEG-LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA 164
           L ++N G L  DR  +  +LK       L +G  VH       F +D  ++  ++ MY  
Sbjct: 79  LDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAK 138

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV---LNLFEEMKMSNVEPDEMVL 221
           CG +  AR +FD+M  +D+V W+ MI GY Q+G        L LF EM    + P+E  L
Sbjct: 139 CGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFAL 198

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           S ++  C   G+   G+ +H                         GC       +     
Sbjct: 199 SSLVKCCGFLGSCVDGKQIH-------------------------GC------CWKYGFQ 227

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           +N+ V +++V  Y+R G++ ++RL+FD++  K+ + W+A+ISG+A     +EAL LF +M
Sbjct: 228 ENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKM 287

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
           Q  G    + T  +++ + +  G L+Q + +H ++ K+       V N ++ MYAK G++
Sbjct: 288 QREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNI 347

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDE-SIDPNGVTFIGVLYA 460
             A++VF+R+ + +V+S  SM+  +A HG  + A+  F +M     I+PN +TF+ VL A
Sbjct: 348 CDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTA 407

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSHAGL+DEG   F  M  +Y + PK  HY  +VDLFGRA LL +A   +E MP  PN  
Sbjct: 408 CSHAGLLDEGLYYFELM-KKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNAT 466

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           IWG+L+ A ++H   E+  +AA+++L+LDP + GA  LLSNIYA   +W+DV ++RK MK
Sbjct: 467 IWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMK 526

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           + G+ KE ACS +E+ N V+ F   D SH Q +++YE    +  ++K  GYVPD     V
Sbjct: 527 DSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHVHV 586

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
            ++ +EK   + +HSEKLAL + L+++K  S IRI+KN+RVC DCH+ IK VS V  REI
Sbjct: 587 FVDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKNIRVCGDCHSAIKYVSLVVKREI 646

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           ++RD  RFHH++DG CSC+DYW
Sbjct: 647 IVRDTNRFHHFRDGSCSCRDYW 668



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 209/452 (46%), Gaps = 49/452 (10%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSH----HSQNSLLLKLLLTSFSLPTTTPSSLYYALSIF 74
           +  C+ L  +KQ      KL H+H      +N L++K    S         SL  A  +F
Sbjct: 98  LKRCTMLGKLKQG-----KLVHTHLMNSKFRNDLVIK---NSILFMYAKCGSLEIARQVF 149

Query: 75  SQIPAPPSRVSNKFIRAIS---WSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
            ++           I   S   ++     AL +FL+M+ +GL  + F+   ++K      
Sbjct: 150 DEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLG 209

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
             ++G Q+HG   K GF  + FV + LV MY  CG++ ++RL+FD++  ++ V W+ +I 
Sbjct: 210 SCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALIS 269

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           G+ + G  +E L LF +M+       E   S +L + S  G+L  G+ +H  ++ +   L
Sbjct: 270 GFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKL 329

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
             ++ +TL+ MYA  G +  AK +FD+++  ++V   +M+ GY++ G             
Sbjct: 330 VGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGL------------ 377

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPDKVTMLSVISACAHLGVLDQAQ 370
                               +EA++LF EM +   ++P+ +T LSV++AC+H G+LD+  
Sbjct: 378 -------------------GKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGL 418

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
                + K      L     ++D++ + G L+ A+   E M    N   W +++ A  +H
Sbjct: 419 YYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMH 478

Query: 430 GDARNALIFFNKMKD-ESIDPNGVTFIGVLYA 460
            +         K+ + +   P   T +  +YA
Sbjct: 479 KNTEMGAYAAQKVLELDPFYPGAHTLLSNIYA 510


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/545 (40%), Positives = 342/545 (62%), Gaps = 4/545 (0%)

Query: 53   LLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG 112
            LL S++L   +P+++  A  +F QIP P     N  IR  S +++P  A++ +  M ++ 
Sbjct: 735  LLKSYAL---SPTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQA 791

Query: 113  LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR 172
            L  +  ++P +LKA AR   +     VH    KLGF SD FV   L+  Y    ++  AR
Sbjct: 792  LFGNNLTYPFLLKACARISNV-SCTTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFAR 850

Query: 173  LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
             +FD+MS RD+V W+ +I GY +   + EVL +FEEM+M++V+ D + + K++ AC+  G
Sbjct: 851  KVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLG 910

Query: 233  NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
                 +A+ E+I +N V +D +L +TLI MY     +D+A+ +FD++  +N+V   AM+ 
Sbjct: 911  EWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIM 970

Query: 293  GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
            GY +AG +  AR +FD M  +D+I W++MIS Y++     +A++LF EM V  +KPD++T
Sbjct: 971  GYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEIT 1030

Query: 353  MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
            + SV+SACAH+G LD  + +H YI K     D+ V NA+IDMY KCG++E    VFE M 
Sbjct: 1031 VASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMG 1090

Query: 413  RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
            +R+ +SWTS+I   A++G A +AL  F+ M  E + P   TF+GVL AC+HAG+VD+G E
Sbjct: 1091 KRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLE 1150

Query: 473  IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
             F SM   Y + P+ +HYGC+VDL  R+  L  A E ++ MP  P+VV+W  L++A +VH
Sbjct: 1151 YFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVH 1210

Query: 533  GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
            G + LAE A K+LL+ DP + G  +L SN YA   RW+DV ++R+ M+E  + K  A S 
Sbjct: 1211 GNLHLAEIATKKLLETDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSS 1270

Query: 593  IEMNN 597
            +E+N+
Sbjct: 1271 VEIND 1275


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/570 (38%), Positives = 343/570 (60%), Gaps = 34/570 (5%)

Query: 155 QTGLVGMYG-ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN 213
           ++ L+ +Y  + G +  A L F ++       W+ +I G+ Q+         ++ M   +
Sbjct: 41  RSKLLELYALSLGNLSFAILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKS 100

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
            + D +  S +L AC+R         +H  I+      DA L +TL+ +YA         
Sbjct: 101 RKVDALTCSFVLKACARVLARLESIQIHTHIVRKGFIADALLGTTLLDVYA--------- 151

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
                                 + G+++ A  +FD+MV++D+  W+A+ISG+A+ + P E
Sbjct: 152 ----------------------KVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTE 189

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
           AL LF  M++ G KP+++++L  +SACA LG   + ++IH YI    F  + +V N +ID
Sbjct: 190 ALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVID 249

Query: 394 MYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
           MYAKCG ++ A  VFE M  R+++++W +MI AFA+HG+   AL  F KM    + P+ V
Sbjct: 250 MYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDV 309

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
           +++ VL AC+H GLV+EG  +F SM N   + P  +HYG +VDL GRA  L EA ++V +
Sbjct: 310 SYLAVLCACNHGGLVEEGFRLFNSMEN-CGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNS 368

Query: 513 MPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572
           MP  P++V+W +L+ A R H  +E+AE  +++L+++  +H G  VLLSN+YA  +RW DV
Sbjct: 369 MPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADV 428

Query: 573 GELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYV 632
           G +R++MK R + K    S IE N  +++F  AD+SH+   +IY KL+E+   +K  GYV
Sbjct: 429 GRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYGYV 488

Query: 633 PDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLV 692
            +    L D+ +E+K  V+  HSEKLA+ +GLIS+ + + I+++KNLR+C DCH  IKL+
Sbjct: 489 AETSFVLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICGDCHFVIKLI 548

Query: 693 SKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           SK+Y REI++RDR RFH +K+G CSC+DYW
Sbjct: 549 SKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 201/415 (48%), Gaps = 39/415 (9%)

Query: 19  ISSCSSLT--HMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
           +S C++L+  H KQ HA +          +    KLL     L   +  +L +A+  FSQ
Sbjct: 9   LSKCTTLSLPHTKQLHAHLFTTGQFRLPISPARSKLL----ELYALSLGNLSFAILTFSQ 64

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
           I  P +   N  IR    S  P +A   +  M+++   +D  +   +LKA AR    LE 
Sbjct: 65  IRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLES 124

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
           +Q+H    + GF +D  + T L+ +Y   G+I  A  +FD+M  RDI  W+ +I G+ Q 
Sbjct: 125 IQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQG 184

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
               E L+LF+ M++   +P+E+ +   LSAC++ G+   GE +H +I      ++A + 
Sbjct: 185 SKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVC 244

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM-VEKDL 315
           + +I MYA CG +D                                A L+F+ M   KD+
Sbjct: 245 NVVIDMYAKCGFVD-------------------------------KAYLVFESMSCRKDI 273

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + W+ MI  +A +    +AL+LF +M   G+ PD V+ L+V+ AC H G++++  R+   
Sbjct: 274 VTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNS 333

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-RNVISWTSMINAFAIH 429
           ++      +++   +++D+  + G L  A ++   M    +++ W +++ A   H
Sbjct: 334 MENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGASRTH 388


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/654 (34%), Positives = 361/654 (55%), Gaps = 32/654 (4%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F +IP   S   N  I           ++ +FLKM   G     F+F  +LKA+  
Sbjct: 203 ACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVG 262

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
                 G Q+H L    GF  D  V   ++  Y    ++L+ R++FD+M   D V ++V+
Sbjct: 263 LHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVV 322

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I  Y Q   ++  L+ F EM+    +      + +LS  +   +L  G  +H   +    
Sbjct: 323 ISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATA 382

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
               H+ ++L+ MYA C                                  E+A LIF  
Sbjct: 383 DSILHVGNSLVDMYAKCE-------------------------------MFEEAELIFKS 411

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           + ++  + W+A+ISGY +       LKLF +M+   ++ D+ T  +V+ A A    L   
Sbjct: 412 LPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLG 471

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           +++H +I ++    ++   + ++DMYAKCGS++ A +VFE M  RN +SW ++I+A A +
Sbjct: 472 KQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADN 531

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           GD   A+  F KM +  + P+ V+ +GVL ACSH G V++G E F +M+  Y I PK +H
Sbjct: 532 GDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKH 591

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           Y CM+DL GR     EA +L++ MPF P+ ++W S++ ACR+H    LAE AA++L  ++
Sbjct: 592 YACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSME 651

Query: 550 PDHD-GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
              D  A V +SNIYA    W+ V +++K+M+ERGI K  A S +E+N++++ F + D++
Sbjct: 652 KLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQT 711

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
           H   D+I  K+NE+ +E++  GY PD  S + D++++ K E + +HSE+LA+ + LIS+ 
Sbjct: 712 HPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTP 771

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +   I ++KNLR C DCH  IKL+SK+  REI +RD +RFHH+ +GVCSC DYW
Sbjct: 772 EGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 122/491 (24%), Positives = 224/491 (45%), Gaps = 42/491 (8%)

Query: 79  APPSRVSNKFIRAISWSHRPKH---ALKVFLKMLNEGLTI--DRFSFPPILKAIARAEGL 133
           A P R    +   + W  R  H   A K+F +M         D  +F  +L     A   
Sbjct: 104 AMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQ 163

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACG-KILD-ARLMFDKMSYRDIVPWSVMID 191
               QVH    KLGF ++PF+    V +   C  + LD A ++F+++  +D V ++ +I 
Sbjct: 164 NAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLIT 223

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           GY ++GL+ E ++LF +M+ S  +P +   S +L A     + + G+ +H   +    + 
Sbjct: 224 GYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSR 283

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           DA + + ++  Y+    +   + LFD++   + V    ++S YS+A Q E          
Sbjct: 284 DASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYE---------- 333

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
                                 +L  F EMQ  G         +++S  A+L  L   ++
Sbjct: 334 ---------------------ASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQ 372

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           +H           L V N+++DMYAKC   E A  +F+ + +R  +SWT++I+ +   G 
Sbjct: 373 LHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGL 432

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
               L  F KM+  ++  +  TF  VL A +    +  G+++ A +    N+   +   G
Sbjct: 433 HGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSG 492

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ--LD 549
            +VD++ +   +++A+++ E MP   N V W +L++A   +G+ E A  A  ++++  L 
Sbjct: 493 -LVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQ 550

Query: 550 PDHDGALVLLS 560
           PD    L +L+
Sbjct: 551 PDSVSILGVLT 561



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 160/366 (43%), Gaps = 35/366 (9%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN--VEPDEMVLSK 223
           G +  AR +FD M  R +V W++++  Y +N  FDE   LF +M  S+    PD +  + 
Sbjct: 93  GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           +L  C+ A   +    VH F +                           K  FD      
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAV---------------------------KLGFDTNPF-- 183

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           L VS  ++  Y    +++ A ++F+++ EKD + ++ +I+GY ++    E++ LF +M+ 
Sbjct: 184 LTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQ 243

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
            G +P   T   V+ A   L      Q++H       F  D  V N I+D Y+K   +  
Sbjct: 244 SGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLE 303

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
            R +F+ M   + +S+  +I++++       +L FF +M+    D     F  +L   ++
Sbjct: 304 TRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAAN 363

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYG-CMVDLFGRANLLREALELVETMPFAPNVVIW 522
              +  GR++               H G  +VD++ +  +  EA  + +++P     V W
Sbjct: 364 LSSLQMGRQLHCQAL--LATADSILHVGNSLVDMYAKCEMFEEAELIFKSLP-QRTTVSW 420

Query: 523 GSLMAA 528
            +L++ 
Sbjct: 421 TALISG 426


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/587 (38%), Positives = 346/587 (58%), Gaps = 33/587 (5%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           ++H +  + GF     + T L+      G +  AR +FD+M    I  W+ +  GY +N 
Sbjct: 29  KIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQ 88

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
           L  E L L+++M+   V PDE     ++ A S+ G+ S G A+H  ++            
Sbjct: 89  LPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGF-------- 140

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
                    GC+               +V+T +V  Y + G++  A  +F+ M  KDL+ 
Sbjct: 141 ---------GCLG--------------IVATELVMMYMKFGELSSAEFLFESMQVKDLVA 177

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W+A ++   +  +   AL+ FN+M    ++ D  T++S++SAC  LG L+  + I+    
Sbjct: 178 WNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRAR 237

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           K     ++ V NA +DM+ KCG+ E+AR +FE M++RNV+SW++MI  +A++GD+R AL 
Sbjct: 238 KEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALT 297

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM--TNEYNIPPKYEHYGCMVD 495
            F  M++E + PN VTF+GVL ACSHAGLV+EG+  F+ M  +N+ N+ P+ EHY CMVD
Sbjct: 298 LFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVD 357

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555
           L GR+ LL EA E ++ MP  P+  IWG+L+ AC VH ++ L +  A  L++  PD    
Sbjct: 358 LLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSY 417

Query: 556 LVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQI 615
            VLLSNIYA   +W  V ++R  M++ G  K  A S +E   +++ F   D+SH Q+  I
Sbjct: 418 HVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAI 477

Query: 616 YEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRI 675
           YEKL+E++ +++  GYVPD  S   D+E EEK   +  HSEKLA+ +GLI  +    IR+
Sbjct: 478 YEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRV 537

Query: 676 VKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +KNLR C+DCH F K VS + + EI++RD+ RFHH+++GVCSCK++W
Sbjct: 538 MKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 194/416 (46%), Gaps = 42/416 (10%)

Query: 20  SSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA 79
           +S S    +K+ HA +L+   S   +NSLL +LL             + YA  +F ++  
Sbjct: 19  ASSSKPKQLKKIHAIVLRTGFSE--KNSLLTQLLEN-----LVVIGDMCYARQVFDEMHK 71

Query: 80  PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQV 139
           P   + N   +    +  P  +L ++ KM + G+  D F++P ++KAI++      G  +
Sbjct: 72  PRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFAL 131

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
           H    K GFG    V T LV MY   G++  A  +F+ M  +D+V W+  +    Q G  
Sbjct: 132 HAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNS 191

Query: 200 DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259
              L  F +M    V+ D   +  +LSAC + G+L  GE +++      +  +  +++  
Sbjct: 192 AIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENAR 251

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWS 319
           + M+  CG  + A+ LF+++  +N+V  + M+ GY                         
Sbjct: 252 LDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGY------------------------- 286

Query: 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDK 378
                 A N   +EAL LF  MQ  G++P+ VT L V+SAC+H G++++ +R   L +  
Sbjct: 287 ------AMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQS 340

Query: 379 NAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD 431
           N    + R  +   ++D+  + G LE A E  ++M    +   W +++ A A+H D
Sbjct: 341 NDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRD 396



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 16/178 (8%)

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           Q ++IH  + +  F     +   +++     G +  AR+VF+ M +  +  W ++   + 
Sbjct: 26  QLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYV 85

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            +     +L+ + KM+D  + P+  T+  V+ A S  G    G  + A +        KY
Sbjct: 86  RNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVV-------KY 138

Query: 488 EHYGC-------MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
             +GC       +V ++ +   L  A  L E+M    ++V W + +A C   G   +A
Sbjct: 139 -GFGCLGIVATELVMMYMKFGELSSAEFLFESMQ-VKDLVAWNAFLAVCVQTGNSAIA 194


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/653 (33%), Positives = 356/653 (54%), Gaps = 31/653 (4%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A+ +F  I  P   V +  I  +    + + ++K+F  M       ++++   +L A   
Sbjct: 368 AIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATN 427

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G  +H    K GF +D  V   LV MY   G + D   +++ M  RD++ W+  
Sbjct: 428 TGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAY 487

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           + G    G++D  L +F  M      P+      IL +CS   ++ YG  VH  II N +
Sbjct: 488 LSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQL 547

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             +  + + LI MYA C  ++ A   F+++ +++L   T +++ Y+              
Sbjct: 548 DDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYA-------------- 593

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                            + N  ++AL  F +MQ  G+KP++ T+   +S C+ L  L+  
Sbjct: 594 -----------------QTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG 636

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           Q++H  + K+    D+ V +A++DMYAKCG +E A  +FE + RR+ I+W ++I  +A +
Sbjct: 637 QQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQN 696

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G    AL  F  M DE I P+GVTF G+L ACSH GLV+EG+E F SM  ++ I P  +H
Sbjct: 697 GQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDH 756

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
             CMVD+ GR     E  + ++ M  + N +IW +++ A ++H  + L E AA +L +L 
Sbjct: 757 CACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQ 816

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P+ + + +LLSNI+A + RW DV  +R  M  +G+ KE  CS +E N +V+ F++ D SH
Sbjct: 817 PEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSH 876

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
            Q  +I+ KL+E+  EL    YVP     L ++ + EK+E + +HSE+LAL + LIS+  
Sbjct: 877 PQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTSS 936

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +  IRI KNLR+C DCH+ +K +S +  +EIV+RD  RFHH+K+G CSC D+W
Sbjct: 937 EKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSCNDFW 989



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 146/546 (26%), Positives = 245/546 (44%), Gaps = 43/546 (7%)

Query: 11  LTLPTS-TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP-SSLY 68
            TL T   A S C +L   KQ HAQ  KL         LLL L + S  +        + 
Sbjct: 214 FTLATGLKACSLCMALDLGKQMHAQAFKLG--------LLLDLFVGSALVDLYAKCGEIE 265

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
            A  +F  +P       N  +   +        LK+F  M+   +  + F+   +LK  A
Sbjct: 266 LASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCA 325

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
            ++ L +G  +H L  K G+  + F+  GLV MY  CG  +DA  +F  +   DIV WS 
Sbjct: 326 NSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSA 385

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I    Q G  +E + LF  M++ +  P++  +  +LSA +  GNL YG+++H  +    
Sbjct: 386 LITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYG 445

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D  + + L+TMY   GC                               V D   +++
Sbjct: 446 FETDVAVSNALVTMYMKNGC-------------------------------VHDGTKLYE 474

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
            MV++DLI W+A +SG  +       L +F  M   G  P+  T +S++ +C+ L  +  
Sbjct: 475 SMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHY 534

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            +++H +I KN    +  V  A+IDMYAKC  LE A   F R+  R++ +WT +I  +A 
Sbjct: 535 GRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQ 594

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
                 AL +F +M+ E + PN  T  G L  CS    ++ G+++ + +    ++   + 
Sbjct: 595 TNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFV 654

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
               +VD++ +   + EA  L E +    + + W +++     +G+   A  A + +L  
Sbjct: 655 G-SALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDE 712

Query: 549 DPDHDG 554
               DG
Sbjct: 713 GISPDG 718



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 186/409 (45%), Gaps = 33/409 (8%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +  +L+  A    L     +HGL  K     D  +   LV +Y  C     ARL+  KM 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            RD+V W+ +I G    G  ++ + LF+EM+   + P+E  L+  L ACS    L  G+ 
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H       + LD  + S L+ +YA CG +++A  +F  +  +N V    +++GY++ G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           V     +F  M+E D+ C                               ++ T+ +V+  
Sbjct: 295 VTGVLKLFCSMMELDVKC-------------------------------NEFTLTTVLKG 323

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           CA+   L Q Q IH  I K  + G+  +   ++DMY+KCG    A  VF+ +++ +++ W
Sbjct: 324 CANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVW 383

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           +++I      G +  ++  F+ M+     PN  T   +L A ++ G +  G+ I A +  
Sbjct: 384 SALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVW- 442

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           +Y           +V ++ +   + +  +L E+M    +++ W + ++ 
Sbjct: 443 KYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSG 490



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 156/319 (48%), Gaps = 41/319 (12%)

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           S +L  C+   +L   +A+H  I+ + +  D+HL  +L+ +YA C               
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKC--------------- 160

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
                     S Y        ARL+  +M ++D++ W+A+I G        +++ LF EM
Sbjct: 161 --------RYSAY--------ARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEM 204

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
           Q  G+ P++ T+ + + AC+    LD  +++H    K     DL V +A++D+YAKCG +
Sbjct: 205 QNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEI 264

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
           E A ++F  M  +N ++W  ++N +A  GD    L  F  M +  +  N  T   VL  C
Sbjct: 265 ELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGC 324

Query: 462 SHAGLVDEGREIFASMTNEYNIPPKY---EHYGC-MVDLFGRANLLREALELVETMPFAP 517
           +++  + +G+ I + +     I   Y   E  GC +VD++ +  L  +A+ + +T+   P
Sbjct: 325 ANSKNLKQGQVIHSLI-----IKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KP 378

Query: 518 NVVIWGSLMAACRVHGEIE 536
           ++V+W +L+      G+ E
Sbjct: 379 DIVVWSALITCLDQQGQSE 397



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 342 QVCGMKPDKVTMLS-VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           QVC     K+   S ++  CA    L  A+ IH  I K+    D  +  +++++YAKC  
Sbjct: 103 QVCWSSKKKLKYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRY 162

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
              AR V  +M  R+V+SWT++I      G A +++  F +M++E I PN  T    L A
Sbjct: 163 SAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKA 222

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHY--GCMVDLFGRANLLREALELVETMPFAPN 518
           CS    +D G+++ A     + +    + +    +VDL+ +   +  A ++   MP   N
Sbjct: 223 CSLCMALDLGKQMHA---QAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQN 278

Query: 519 VVIWGSLMAACRVHGEI 535
            V W  L+      G++
Sbjct: 279 DVTWNVLLNGYAQRGDV 295


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/622 (36%), Positives = 346/622 (55%), Gaps = 66/622 (10%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A++ F +M N+G+  + F+FP IL A         G QVHG     GFG + +VQ+ LV 
Sbjct: 220 AIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVD 279

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG +  AR++ D M   D+V W+ MI G   +G  +E L LF +M   ++  D+  
Sbjct: 280 MYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFT 339

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
              +L + +   NL  GE+VH                T+ T +  C              
Sbjct: 340 YPSVLKSLASCKNLKIGESVHSL--------------TIKTGFDACK------------- 372

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                VS A+V  Y++ G +  A  +F+++++KD+I W+++++GY  N   ++AL+LF +
Sbjct: 373 ----TVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCD 428

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M+   +  D+  +  V SACA L V++  +++H    K++ G  L   N++I MYAKCG 
Sbjct: 429 MRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGC 488

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           LE A  VF+ M  RNVISWT++I  +A                                 
Sbjct: 489 LEDAIRVFDSMETRNVISWTAIIVGYA--------------------------------- 515

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
               GLV+ G+  F SM   Y I P  +HY CM+DL GRA  + EA  L+  M   P+  
Sbjct: 516 --QNGLVETGQSYFESMEKVYGIKPASDHYACMIDLLGRAGKINEAEHLLNRMDVEPDAT 573

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           IW SL++ACRVHG +EL E A K L++L+P +    VLLSN+++   RW+D   +R++MK
Sbjct: 574 IWKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMK 633

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
             GI KE   S IEM ++V+ F++ DRSH    +IY K++E++  +K AG+VPD++ AL 
Sbjct: 634 TMGINKEPGYSWIEMKSQVHTFISEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALR 693

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D+++E K   + +HSEKLA+ +GL++  K + IRI KNLRVC DCH+ +K +S ++ R I
Sbjct: 694 DMDEEAKERSLAYHSEKLAVAFGLLTVAKGAPIRIFKNLRVCGDCHSAMKYISSIFKRHI 753

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           ++RD   FHH+ +G CSC D+W
Sbjct: 754 ILRDLNCFHHFIEGKCSCGDFW 775



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 188/404 (46%), Gaps = 34/404 (8%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D +    ++  Y   G +++AR +F++   ++ + WS ++ GY +NG   E L  F +M 
Sbjct: 67  DKYTWNIMISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMW 126

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
               +P +  L  +L ACS    L  G+ +H + I   +  +  + + L+ MY+ C C+ 
Sbjct: 127 SDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCL- 185

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
                                        +E   L F     K+ + W+AM++GYA+N  
Sbjct: 186 -----------------------------LEAEYLFFSLPDRKNYVQWTAMLTGYAQNGE 216

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
             +A++ F EM+  GM+ +  T  S+++AC  +      +++H  I  + FG ++ V +A
Sbjct: 217 SLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSA 276

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           ++DMYAKCG L SAR + + M   +V+ W SMI     HG    AL+ F+KM +  I  +
Sbjct: 277 LVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRID 336

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
             T+  VL + +    +  G  +  S+T +            +VD++ +   L  AL++ 
Sbjct: 337 DFTYPSVLKSLASCKNLKIGESVH-SLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVF 395

Query: 511 ETMPFAPNVVIWGSLMAACRVHG--EIELAEFAAKQLLQLDPDH 552
             +    +V+ W SL+     +G  E  L  F   +  ++D D 
Sbjct: 396 NKI-LDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQ 438



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 149/278 (53%), Gaps = 8/278 (2%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + AL +F KM N  + ID F++P +LK++A  + L  G  VH L  K GF +   V   L
Sbjct: 319 EEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNAL 378

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           V MY   G +  A  +F+K+  +D++ W+ ++ GY  NG  ++ L LF +M+ + V+ D+
Sbjct: 379 VDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQ 438

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
            V++ + SAC+    + +G  VH   I ++       +++LITMYA CGC++ A  +FD 
Sbjct: 439 FVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFDS 498

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM-----VEKDLICWSAMISGYAENNHPQE 333
           +  +N++  TA++ GY++ G VE  +  F+ M     ++     ++ MI          E
Sbjct: 499 METRNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASDHYACMIDLLGRAGKINE 558

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           A  L N M V   +PD     S++SAC   G L+  +R
Sbjct: 559 AEHLLNRMDV---EPDATIWKSLLSACRVHGNLELGER 593



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 152/281 (54%), Gaps = 3/281 (1%)

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           L++  +  G +D A+ LFD++  ++      M+S Y+  G + +AR +F++   K+ I W
Sbjct: 43  LLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNSITW 102

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           S+++SGY +N    E L+ F++M   G KP + T+ SV+ AC+ L +L   + IH Y  K
Sbjct: 103 SSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIK 162

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALI 437
                ++ V   ++DMY+KC  L  A  +F  +  R+N + WT+M+  +A +G++  A+ 
Sbjct: 163 IQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQ 222

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F +M+++ ++ N  TF  +L AC+       GR++   +      P  Y     +VD++
Sbjct: 223 CFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQ-SALVDMY 281

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
            +   L  A  +++TM    +VV W S++  C  HG +E A
Sbjct: 282 AKCGDLASARMILDTMEI-DDVVCWNSMIVGCVTHGYMEEA 321



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 38/181 (20%)

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
           +N ++   +K G ++ AR++F++M  R+  +W  MI+A+A  G+   A   FN    E+ 
Sbjct: 40  SNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFN----ETP 95

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE--------------HYGCM 493
             N +T+  ++      G   EG   F+ M ++   P +Y               H G M
Sbjct: 96  IKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKM 155

Query: 494 --------------------VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
                               VD++ +   L EA  L  ++P   N V W +++     +G
Sbjct: 156 IHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNG 215

Query: 534 E 534
           E
Sbjct: 216 E 216


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/585 (38%), Positives = 354/585 (60%), Gaps = 8/585 (1%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A+ IF ++P       N  I       R   AL  F +M   G  ++ +SF   L A A 
Sbjct: 104 AVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAG 163

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            + L  G Q+H L  +  + SD ++ + LV MY  CG++  A+ +FD+M+ R  V W+ +
Sbjct: 164 LQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSL 223

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID-NN 248
           I  Y QNG  DE L +F EM    VEPDE+ L+ ++SAC+    +  G+ +H  ++  + 
Sbjct: 224 ITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDE 283

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D  L + L+ MYA C  ++ A+ +FD + ++++V  T+MVSGY++A +V+ AR +F 
Sbjct: 284 FRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFS 343

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
            M+ KD+I W+A+I+G  +N   +EAL LF  ++   + P   T  ++++ACA+L  L  
Sbjct: 344 NMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQL 403

Query: 369 AQRIHLYIDKNAF------GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
            ++ H ++ K+ F        D+ V N++IDMY KCGS+E+   VF+ M  ++ +SW +M
Sbjct: 404 GRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAM 463

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I  +A +G    AL  F KM +    P+ VT IGVL ACSHAGL+DEGR  F SMT ++ 
Sbjct: 464 IVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHG 523

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           + P  +HY CMVDL GRA  L EA  L+E M   P+ ++WGSL+AAC+VH  I+L E+  
Sbjct: 524 LMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVV 583

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           K+LL++DP++ G  VLLSN+YA+++ W++V  +RK M++RG++K+  CS IE+  E+  F
Sbjct: 584 KKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQGELNVF 643

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEK 647
           +  D+ H +  +IY  L  ++ ++K AGYVP + S   D EDEE+
Sbjct: 644 MVKDKRHARKKEIYMVLRTILQQMKQAGYVPYVGSNEFD-EDEEQ 687



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 195/423 (46%), Gaps = 94/423 (22%)

Query: 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR 172
           L +D   F  +L   AR+    +  +VH    K  F S+ F+Q  L+ +YG CG +  AR
Sbjct: 15  LFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVAR 74

Query: 173 LMFDKMSYRDI-------------------------------VPWSVMIDGYFQNGLFDE 201
            +FD+M  R+I                                 W+ MI G+ Q+G FDE
Sbjct: 75  KLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDE 134

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
            L  F +M       +E      LSAC+   +L  G  +H  +  +N   D ++ S L+ 
Sbjct: 135 ALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVD 194

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
           MY+ CG ++ A+ +FD++ +++ V   ++++ Y + G V+                    
Sbjct: 195 MYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVD-------------------- 234

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK-NA 380
                      EALK+F EM  CG++PD+VT+ SV+SACA +  + + Q+IH  + K + 
Sbjct: 235 -----------EALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDE 283

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA------------- 427
           F  DL + NA++DMYAKC  +  AR +F+ M  R+V+S TSM++ +A             
Sbjct: 284 FRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFS 343

Query: 428 ------------------IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
                              +G+   ALI F  +K ES+ P   TF  +L AC++   +  
Sbjct: 344 NMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQL 403

Query: 470 GRE 472
           GR+
Sbjct: 404 GRQ 406



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 181/352 (51%), Gaps = 30/352 (8%)

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           D    SK+L+ C+R+ +      VH  II +  A +  +Q+ LI +Y  CGC+D+A+ LF
Sbjct: 18  DSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLF 77

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           D++L +N+    +++  ++++G ++DA  IF++M + D   W++MISG+ ++    EAL 
Sbjct: 78  DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALV 137

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
            F +M   G   ++ +  S +SACA L  L    +IH  + ++ +  D+ + +A++DMY+
Sbjct: 138 YFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYS 197

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KCG +E A+ VF+ M  R+ +SW S+I  +  +G    AL  F +M    ++P+ VT   
Sbjct: 198 KCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLAS 257

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF- 515
           V+ AC+    + EG++I A +               ++D++ + N + EA  + + MP  
Sbjct: 258 VVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIR 317

Query: 516 -----------------------------APNVVIWGSLMAACRVHGEIELA 538
                                          +V+ W +L+A C  +GE E A
Sbjct: 318 SVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEA 369



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 115/460 (25%), Positives = 201/460 (43%), Gaps = 87/460 (18%)

Query: 16  STAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALS 72
            +A+S+C+ L  +K   Q H+ + +   S++  +  +   L+  +S        + YA S
Sbjct: 155 GSALSACAGLQDLKLGSQIHSLVYR---SNYLSDVYMGSALVDMYS----KCGRVEYAQS 207

Query: 73  IFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
           +F ++    SRVS N  I     +     ALK+F++M+  G+  D  +   ++ A A   
Sbjct: 208 VFDEMTVR-SRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATIS 266

Query: 132 GLLEGMQVHGLGTKLG-FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR--------- 181
            + EG Q+H    K   F +D  +   L+ MY  C +I +AR++FD M  R         
Sbjct: 267 AIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMV 326

Query: 182 ----------------------DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
                                 D++ W+ +I G  QNG  +E L LF  +K  +V P   
Sbjct: 327 SGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHY 386

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVAL------DAHLQSTLITMYANCGCMDMAK 273
               +L+AC+   +L  G   H  ++ +          D  + ++LI MY  CG ++   
Sbjct: 387 TFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGC 446

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
            +F  +L K+ V   AM+ GY                               A+N    +
Sbjct: 447 RVFQHMLEKDCVSWNAMIVGY-------------------------------AQNGFGNK 475

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN---A 390
           AL++F +M   G  PD VTM+ V+ AC+H G+LD+ +  + +    A  G + + +    
Sbjct: 476 ALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGR--YYFRSMTAQHGLMPLKDHYTC 533

Query: 391 IIDMYAKCGSLESAREVFERMRRR-NVISWTSMINAFAIH 429
           ++D+  + G LE A+ + E M  + + I W S++ A  +H
Sbjct: 534 MVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVH 573


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/625 (36%), Positives = 356/625 (56%), Gaps = 33/625 (5%)

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           P  AL+VF + L      D  +F   L A AR   L  G  V       G+  D FV + 
Sbjct: 90  PASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSS 148

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+ +Y   G + DA  +F +M  RD V WS M+ G+   G   + + ++  M+   V+ D
Sbjct: 149 LLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGD 208

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           E+V+  ++ AC+ A N+  G +VH  ++ + + +D                         
Sbjct: 209 EVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMD------------------------- 243

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                 +V +T++V  Y++ G ++ A  +F  MV ++ + WSAMISG+A+N    EAL+L
Sbjct: 244 ------VVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRL 297

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F  MQ  G++PD   ++S + AC+++G L   + +H +I +  F  +  +  A IDMY+K
Sbjct: 298 FRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSK 356

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CGSL SA+ +F  +  R++I W +MI     HG  ++AL  F +M +  + P+  TF  +
Sbjct: 357 CGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASL 416

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L A SH+GLV+EG+  F  M N + I P  +HY C+VDL  R+ L+ EA +L+ +M   P
Sbjct: 417 LSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEP 476

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
            V IW +L++ C  + ++EL E  A  +L+L PD  G L L+SN+YA  K+W  V ++RK
Sbjct: 477 TVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRK 536

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            MK+ G  K   CS IE+    + F+  D+SH Q ++I  K+ ++  E++  GY+P    
Sbjct: 537 LMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEF 596

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
              DLE+E K + + +HSE+LA+ +GL+++   + + I+KNLRVC DCH+ IK +SK+  
Sbjct: 597 VYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIAD 656

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           REIV+RD  RFHH+KDGVCSC+DYW
Sbjct: 657 REIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 196/432 (45%), Gaps = 52/432 (12%)

Query: 3   TLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT 62
            L    +P +   + A+S+C+ L  ++   +   +   + +  +  +   LL  ++    
Sbjct: 99  ALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYA---- 154

Query: 63  TPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
              ++  A+ +F ++P       +  +     + +P  A++++ +M  +G+  D      
Sbjct: 155 RWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIG 214

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +++A   A  +  G  VHG   + G   D    T LV MY   G +  A  +F  M +R+
Sbjct: 215 VIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRN 274

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
            V WS MI G+ QNG  DE L LF  M+ S ++PD   L   L ACS  G L  G +VH 
Sbjct: 275 DVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHG 334

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           FI+      +  L +  I MY+ CG +  A+ LF+ +  ++L++  AM++          
Sbjct: 335 FIV-RRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIA---------- 383

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
                         C  A   G       Q+AL LF EM   GM+PD  T  S++SA +H
Sbjct: 384 --------------CCGAHGRG-------QDALTLFQEMNETGMRPDHATFASLLSALSH 422

Query: 363 LGVLDQAQRIHLYIDK--NAFGGDLRVNNA------IIDMYAKCGSLESAREVFERMRRR 414
            G++++ +   L+  +  N F    ++  A      ++D+ A+ G +E A ++   M+  
Sbjct: 423 SGLVEEGK---LWFGRMVNHF----KITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAE 475

Query: 415 NVIS-WTSMINA 425
             ++ W ++++ 
Sbjct: 476 PTVAIWVALLSG 487



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 114/235 (48%), Gaps = 6/235 (2%)

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           ++    P  AL++F  +     +PD  T    +SACA LG L   + +        +  D
Sbjct: 84  HSRRGSPASALRVFRALPPAA-RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
           + V ++++ +YA+ G++  A +VF RM RR+ ++W++M+  F   G   +A+  + +M++
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
           + +  + V  IGV+ AC+ A  V  G  +   +   + +         +VD++ +  LL 
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLL-RHGMRMDVVTATSLVDMYAKNGLLD 261

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALV 557
            A  +   M    N V W ++++    +G+ +  L  F   Q   + PD  GALV
Sbjct: 262 VACRVFGLM-VHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPD-SGALV 314


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/679 (35%), Positives = 375/679 (55%), Gaps = 58/679 (8%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKM----------LNEG------L 113
           A ++F ++  P   +    I   + ++R  HAL++F +M          + +G      L
Sbjct: 30  ARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADL 89

Query: 114 TIDRFSFP-----PILKAIARAEGLLEGMQVH---GLGTKLGFGSDPFVQTGLVGMYGAC 165
           T+ R  F       ++       G L+  ++    GL  K+ F  D      ++  Y   
Sbjct: 90  TMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPF-RDIAAWNSMIYGYCCN 148

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE--PDEMVLSK 223
           G++ D   +F +M  R+++ W+ MI G  Q+G  +E L LF +M    VE  P       
Sbjct: 149 GRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCC 208

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           +++AC+ A  L  G  +H  +     + DA++ + LIT YANC                 
Sbjct: 209 VITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCK---------------- 252

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
                          Q+ED+  +F   +  +++ W+A+++GY  N   ++ALK+F EM  
Sbjct: 253 ---------------QMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMR 297

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
            G+ P++ +  S +++C  L  LD  + IH    K     D+ V N++I MY +CG+L  
Sbjct: 298 EGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLND 357

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
              +F+R+ ++N++SW S+I   A HG    AL FFN+M    ++P+ +TF G+L ACSH
Sbjct: 358 GVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSH 417

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
           +G+  +GR +F   +   +   K +HY CMVD+ GR+  L EA EL+  MP   N ++W 
Sbjct: 418 SGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWL 477

Query: 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
            L++AC +H ++E+AE AAK ++ L+P    A VLLSN+YA   RW DV  +R+ MK+RG
Sbjct: 478 VLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRG 537

Query: 584 ILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLE 643
           I K+   S I +     EFL+ DRSH  +D+IY+KL  +  +LK  GYVPD   AL D+E
Sbjct: 538 ITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVE 597

Query: 644 DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIR 703
           DE+K  ++ +HSE+LA+ +GLIS+ + S I ++KNLRVC DCH+ IKL++K+  R+I++R
Sbjct: 598 DEQKEVMLSYHSERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVR 657

Query: 704 DRTRFHHYKDGVCSCKDYW 722
           D TRFHH+ DG CSC DYW
Sbjct: 658 DSTRFHHFMDGRCSCGDYW 676



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 202/398 (50%), Gaps = 14/398 (3%)

Query: 167 KILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS 226
           +I +AR +FDK+S+ D+  +++MI GY +N  FD  L LF EM + +V    +  + ++ 
Sbjct: 26  RIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDV----VSWNSMIK 81

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV 286
            C    +L+    + + + + +V       +T+I  +   G +++A+GLF K+  +++  
Sbjct: 82  GCFDCADLTMARKLFDEMPERSVV----SWTTMINGFLQFGKIEVAEGLFYKMPFRDIAA 137

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG- 345
             +M+ GY   G+VED   +F +M  +++I W++MI G  ++   +EAL LF +M  CG 
Sbjct: 138 WNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGV 197

Query: 346 -MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
            +KP   T   VI+ACA+   L Q  +IH ++ K  +  D  ++ A+I  YA C  +E +
Sbjct: 198 EVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDS 257

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
             VF      NV+ WT+++  + ++    +AL  F +M  E + PN  +F   L +C   
Sbjct: 258 LRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGL 317

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGS 524
             +D GREI  +   +  +         ++ ++ R   L + + + + +    N+V W S
Sbjct: 318 EALDWGREIHTAAV-KLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNS 375

Query: 525 LMAACRVH--GEIELAEFAAKQLLQLDPDHDGALVLLS 560
           ++  C  H  G   LA F       ++PD      LLS
Sbjct: 376 VIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLS 413



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 165/348 (47%), Gaps = 16/348 (4%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +PT        TA ++ S+L    Q HA + KL +S    ++ +   L+T ++       
Sbjct: 200 KPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSF---DAYISAALITFYANCKQMED 256

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           SL     +F         +    +     + + + ALKVF +M+ EG+  ++ SF   L 
Sbjct: 257 SL----RVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALN 312

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           +    E L  G ++H    KLG  +D FV   L+ MY  CG + D  ++F ++S ++IV 
Sbjct: 313 SCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVS 372

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ +I G  Q+G     L  F +M  S VEPDE+  + +LSACS +G    G  + ++  
Sbjct: 373 WNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFS 432

Query: 246 DNN---VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVE 301
           +N    V LD +  + ++ +    G ++ A+ L   + +K N +V   ++S  +   ++E
Sbjct: 433 ENKSAEVKLDHY--ACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLE 490

Query: 302 DARLIFDQMVEKDLICWSAMI---SGYAENNHPQEALKLFNEMQVCGM 346
            A      +++ +  C SA +   + YA  +   +  ++  EM+  G+
Sbjct: 491 VAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGI 538


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/467 (44%), Positives = 307/467 (65%), Gaps = 4/467 (0%)

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           +++I  YA  G +  A+ LF++VL    V  T+MV+G+ RAG VE AR +F++M E+DL+
Sbjct: 81  NSMIHGYAVSGDVGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLV 140

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            W+AMISG   N  P EAL LF  M   G  P++ T++SV+SAC   G L+  + +H+++
Sbjct: 141 SWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFV 200

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
           +K     D  +  A++DMYAKCG++E A EVF  +R RN  +W +MIN  A++G +  AL
Sbjct: 201 EKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKAL 260

Query: 437 IFFNKMK-DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
             F +M+ + ++ P+ VTF+GVL ACSHAG VD G+E F ++  +Y +    EHY CMVD
Sbjct: 261 DMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYACMVD 320

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555
           L  R+  L+EA +L+  MP  P+VV+W +L+  CR+H  +++AE     + +++    G 
Sbjct: 321 LLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAE---NVISEMEATCSGD 377

Query: 556 LVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQI 615
            VLLSN+YA   RW  V ++R++M+ +GI K   CS +EM+  ++EF++ D+SH   D I
Sbjct: 378 HVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCSSVEMDGSIHEFISGDKSHPSYDDI 437

Query: 616 YEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRI 675
           + KL E+   ++  GYV +      D+EDEEK + + +HSEKLA+ +GLI    ++ IRI
Sbjct: 438 HAKLIEIGGRMQQHGYVTETAEVFYDIEDEEKEQALGYHSEKLAIAFGLIGGPPEATIRI 497

Query: 676 VKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           VKNLR C DCH+F KLVSK+Y REIV+RDR RFHH++ G CSC D+W
Sbjct: 498 VKNLRFCTDCHSFAKLVSKIYHREIVVRDRARFHHFRGGACSCNDFW 544



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 167/372 (44%), Gaps = 56/372 (15%)

Query: 82  SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA------IARAEGLLE 135
           +R +N FI+    + R   A +VF  M       D  SF  ++        +  A+ L E
Sbjct: 46  TRTNNAFIQGYCSAGRVTDARRVFDGMPRR----DTVSFNSMIHGYAVSGDVGSAQRLFE 101

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
            +              P   T +V  +   G +  AR +F++M  RD+V W+ MI G   
Sbjct: 102 RV----------LAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVG 151

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           N L  E L LF  M      P+   +  +LSAC+ AG L  G+ VH F+    +  D  L
Sbjct: 152 NRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFL 211

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            + L+ MYA CG +++A  +F  +  +N     AM                         
Sbjct: 212 GTALVDMYAKCGAVELALEVFTGLRARNTCTWNAM------------------------- 246

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCG-MKPDKVTMLSVISACAHLGVLDQAQRIHL 374
                 I+G A N +  +AL +F +M++ G + PD+VT + V+ AC+H G +D A + H 
Sbjct: 247 ------INGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVD-AGKEHF 299

Query: 375 YIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGD 431
           Y     +G +L + +   ++D+ A+ G L+ A ++   M  + +V+ W +++    +H +
Sbjct: 300 YTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKN 359

Query: 432 ARNALIFFNKMK 443
            + A    ++M+
Sbjct: 360 VKMAENVISEME 371



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 122/275 (44%), Gaps = 32/275 (11%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P       N  I     +  P  AL +F  M+ EG   +R +   +L A   
Sbjct: 127 ARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTG 186

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           A  L  G  VH    K     D F+ T LV MY  CG +  A  +F  +  R+   W+ M
Sbjct: 187 AGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAM 246

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           I+G   NG   + L++F +M+++  V PDE+    +L ACS AG +  G+  H + I   
Sbjct: 247 INGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKE-HFYTIPQK 305

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA-RLIF 307
             ++      LI  +  C                       MV   +R+G +++A +LI 
Sbjct: 306 YGVE------LILEHYAC-----------------------MVDLLARSGHLQEAHKLIT 336

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           +  ++ D++ W A++ G   + + + A  + +EM+
Sbjct: 337 EMPMKPDVVVWRALLGGCRLHKNVKMAENVISEME 371



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 19/201 (9%)

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           +H    K  F    R NNA I  Y   G +  AR VF+ M RR+ +S+ SMI+ +A+ GD
Sbjct: 33  LHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGD 92

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
             +A   F ++    + P  VT+  ++     AG V+  R +F  M     +       G
Sbjct: 93  VGSAQRLFERV----LAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISG 148

Query: 492 CMVDLFGRANLLREALELVETM---PFAPNVVIWGSLMAACRVHGEIELAE----FAAKQ 544
           C+ +      L  EAL L   M    F PN     S+++AC   G +E  +    F  K+
Sbjct: 149 CVGN-----RLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKK 203

Query: 545 LLQLDPDHDGALVLLSNIYAK 565
            L+ D     ALV   ++YAK
Sbjct: 204 RLRWDEFLGTALV---DMYAK 221


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/651 (35%), Positives = 364/651 (55%), Gaps = 32/651 (4%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F ++P       N  I           +L  F +M   G+ +DRFS   IL A +    
Sbjct: 183 VFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGF 242

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L  G ++H    +     D  VQT LV MY  CG++  A  +FD+++ + IV W+ MI G
Sbjct: 243 LRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGG 302

Query: 193 YFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           Y  N    E      +M+    + PD + +  +L  C++   +  G++VH F I N    
Sbjct: 303 YSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNG--- 359

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
                                        L +LV+ TA+V  Y   G+++ A  +F QM 
Sbjct: 360 ----------------------------FLPHLVLETALVDMYGECGKLKPAECLFGQMN 391

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           E++LI W+AMI+ Y +N   ++A+ LF ++    +KPD  T+ S++ A A L  L +A++
Sbjct: 392 ERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQ 451

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           IH Y+ K     +  V+N+I+ MY KCG+L  ARE+F+RM  ++VISW ++I A+AIHG 
Sbjct: 452 IHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGF 511

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
            R ++  F++M+++  +PNG TF+ +L +CS AGLV+EG E F SM  +YNI P  EHYG
Sbjct: 512 GRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYG 571

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           C++DL GR   L  A   +E MP AP   IWGSL+ A R  G++ELAE AA+ +L L+ D
Sbjct: 572 CILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHD 631

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
           + G  VLLSN+YA+  RW+DV  ++  MK+ G+ K   CS ++++++ + F+  DRS  +
Sbjct: 632 NTGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNE 691

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS 671
            + +Y+ L+ +  ++    YV  +        ++++      HS +LA+C+GLIS+   +
Sbjct: 692 INMVYDVLDIISKKIGEDVYVHSLTKFRPSDLEKKRANSAKSHSLRLAICFGLISTTIGN 751

Query: 672 CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + + KN+R+CE CH F K +S+   REI++RD   FHH+  G CSC DYW
Sbjct: 752 PVLVRKNIRICEACHRFAKRISETTKREIIVRDSKIFHHFNGGHCSCGDYW 802



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 147/535 (27%), Positives = 255/535 (47%), Gaps = 46/535 (8%)

Query: 34  QILKLSHSHHSQ------NSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNK 87
           +I K + S  +Q      NS+ L   L+S+         +  AL +F  +    + + N 
Sbjct: 41  RIFKTARSKRNQSFLVERNSVSLTRALSSY----VERGYMKNALDLFENMRQCDTFIWNV 96

Query: 88  FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
            IR    +     A+  + +M   G+  D F++P ++KA      L EG +VHG   K G
Sbjct: 97  MIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSG 156

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207
              D ++   L+ MY   G I  A ++F +M  RD+V W+ MI GY   G     L+ F 
Sbjct: 157 LDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFR 216

Query: 208 EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           EM+ S ++ D   +  IL ACS  G L  G+ +H  ++ + + LD  +Q++L+ MYA CG
Sbjct: 217 EMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCG 276

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
            MD A+ LFD++  K++V   AM+ GYS                                
Sbjct: 277 RMDYAERLFDQITDKSIVAWNAMIGGYSL------------------------------- 305

Query: 328 NNHPQEALKLFNEMQVCG-MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
           N    E+     +MQ  G + PD +TM++++  CA L  +   + +H +  +N F   L 
Sbjct: 306 NAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLV 365

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
           +  A++DMY +CG L+ A  +F +M  RN+ISW +MI ++  +G+ R A+  F  + +++
Sbjct: 366 LETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKT 425

Query: 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
           + P+  T   +L A +    + E  +I   +T +  +         +V ++G+   L  A
Sbjct: 426 LKPDATTIASILPAYAELASLREAEQIHGYVT-KLKLDSNTFVSNSIVFMYGKCGNLLRA 484

Query: 507 LELVETMPFAPNVVIWGSLMAACRVH--GEIELAEFAAKQLLQLDPDHDGALVLL 559
            E+ + M F  +V+ W +++ A  +H  G I +  F+  +    +P+    + LL
Sbjct: 485 REIFDRMTF-KDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLL 538


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/616 (37%), Positives = 361/616 (58%), Gaps = 20/616 (3%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDP--FVQTGLVGMYGACGKILDARLMFDK--M 178
           +L+  A    L  G ++H + T  G    P  ++   L   Y + G+I  A+ +FD+  +
Sbjct: 12  LLRQSAHRSFLHPGRELHAVLTTSGLKKAPRSYLSNALFQFYASSGEIATAQKLFDEIPL 71

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
           S +D V W+ ++  + + GL    + LF EM+   VE D + L  +   C++  +L +GE
Sbjct: 72  SDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRFGE 131

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
             H   +         + + L+ MY  CG +   K +F  +  K++V  T ++    +  
Sbjct: 132 QGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWE 191

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPDKVTMLSVI 357
            ++  R +FD+M E++++ W+ M++GY      +E L+L  EM   CG   + VT+ S++
Sbjct: 192 GLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSML 251

Query: 358 SACAHLGVLDQAQRIHLYIDKNA--------FGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           SACA  G L   + +H+Y  K A        + G + V  A++DMYAKCG+++S+ +VF 
Sbjct: 252 SACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVM-VGTALVDMYAKCGNIDSSIKVFR 310

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            MR+RNV++W ++ +  A+HG  R  +  F +M  E + P+ +TF  +L ACSH G+VDE
Sbjct: 311 LMRKRNVVTWNALFSGLAMHGKGRMVIDMFPEMVRE-VKPDDLTFTALLSACSHLGMVDE 369

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G   F S+   Y + PK +HY CMVD+ GRA  + EA  L+  MP  PN V+ GSL+ +C
Sbjct: 370 GWRCFHSL-QFYGLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSLLGSC 428

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
            VHG++E+AE   ++L+Q+ P H    +L+SN+Y  + R      LR S++ RGI K   
Sbjct: 429 SVHGKLEIAERIKRELIQMSPGHTEYQILMSNMYVAEGRSDIADGLRGSLRNRGIRKIPG 488

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLED---EE 646
            S I +N+ V+ F + DRSH +T ++Y KLNEVI  ++ AGYVPDI S LV   +   EE
Sbjct: 489 LSSIYVNDSVHRFSSGDRSHPRTKEVYLKLNEVIERIRSAGYVPDI-SGLVSPSEGDLEE 547

Query: 647 KREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRT 706
           K + +  HSEKLA+C+GL+ +K  + + + KNLR+C DCH+ +K+VSKVY REI+IRDR 
Sbjct: 548 KEQALCCHSEKLAVCFGLLETKPRTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRN 607

Query: 707 RFHHYKDGVCSCKDYW 722
           RFH +K G CSC DYW
Sbjct: 608 RFHQFKGGSCSCSDYW 623



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 174/366 (47%), Gaps = 62/366 (16%)

Query: 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           +++K+F++M  + + ID  S   +    A+ E L  G Q HG+  K+GF +   V   L+
Sbjct: 94  NSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALM 153

Query: 160 GMYGACG---------------------KILD----------ARLMFDKMSYRDIVPWSV 188
            MYG CG                      +LD           R +FD+M  R++V W++
Sbjct: 154 DMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMPERNVVAWTL 213

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV-LSKILSACSRAGNLSYGEAVHEFIIDN 247
           M+ GY   G   EVL L  EM          V L  +LSAC+++GNL  G  VH + +  
Sbjct: 214 MVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIGRWVHVYALKK 273

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
            + +                     +  +D V+     V TA+V  Y++ G ++ +  +F
Sbjct: 274 AMMMG-------------------EEETYDGVM-----VGTALVDMYAKCGNIDSSIKVF 309

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
             M +++++ W+A+ SG A +   +  + +F EM V  +KPD +T  +++SAC+HLG++D
Sbjct: 310 RLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPEM-VREVKPDDLTFTALLSACSHLGMVD 368

Query: 368 QAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMIN 424
           +  R   +     +G + +V++   ++D+  + G +E A  +   M    N +   S++ 
Sbjct: 369 EGWRC--FHSLQFYGLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSLLG 426

Query: 425 AFAIHG 430
           + ++HG
Sbjct: 427 SCSVHG 432


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/633 (35%), Positives = 359/633 (56%), Gaps = 45/633 (7%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL+ F  ML  G+   + +   IL A +    + +G  +H      GF S+  V   ++ 
Sbjct: 144 ALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMT 203

Query: 161 MYGACGKILDARLMFDKM--SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           MYG CG + +AR +FD M  + RD+V W++M+  Y  N    + + L++ M++    PD+
Sbjct: 204 MYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQL---RPDK 260

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           +    +LSACS A ++  G  +H+ I+++                               
Sbjct: 261 VTYVSLLSACSSAEDVGLGRVLHKQIVNDE------------------------------ 290

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
            L KN++V  A+VS Y++ G   +AR +FD+M ++ +I W+ +IS Y       EA  LF
Sbjct: 291 -LEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLF 349

Query: 339 NEM-------QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
            +M           +KPD +  +++++ACA +  L+Q + +           D  V  A+
Sbjct: 350 QQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAV 409

Query: 392 IDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           +++Y KCG +E AR +F+ +  R +V  W +MI  +A  G +  AL  F +M+ E + P+
Sbjct: 410 VNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPD 469

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEY-NIPPKYEHYGCMVDLFGRANLLREALEL 509
             +F+ +L ACSH GL D+G+  F SMT EY N+    +H+GC+ DL GR   L+EA E 
Sbjct: 470 SFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEF 529

Query: 510 VETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW 569
           +E +P  P+ V W SL+AACR H +++ A+  A +LL+L+P      V LSNIYA+ ++W
Sbjct: 530 LEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKW 589

Query: 570 QDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPA 629
             V ++RK M E+G+ KER  S IE+   +++F T D +H +  +I E+L ++ S++K  
Sbjct: 590 HAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKEC 649

Query: 630 GYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFI 689
           GYVPD    L  ++++EK  ++  HSE+LA+  GLIS+   + +R+ KNLRVC DCH   
Sbjct: 650 GYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTAT 709

Query: 690 KLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KL+SK+  R+IV+RD TRFH +KDG CSC+DYW
Sbjct: 710 KLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 219/448 (48%), Gaps = 41/448 (9%)

Query: 88  FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
            + A + S + K  L+   +M  +G+  D  +F   L +    E L +G+++H +     
Sbjct: 29  LVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSR 88

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMS-YRDIVPWSVMIDGYFQNGLFDEVLNLF 206
              DP V   L+ MY  CG +  A+ +F KM   R+++ WS+M   +  +G   E L  F
Sbjct: 89  LEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHF 148

Query: 207 EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
             M +  ++  +  +  ILSACS    +  G  +H  I  +    +  + + ++TMY  C
Sbjct: 149 RFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMYGRC 208

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
           G ++ A+ +FD +                            D+ + +D++ W+ M+S Y 
Sbjct: 209 GAVEEARKVFDAM----------------------------DEAL-RDVVSWNIMLSTYV 239

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
            N+  ++A++L+  MQ   ++PDKVT +S++SAC+    +   + +H  I  +    ++ 
Sbjct: 240 HNDRGKDAIQLYQRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVI 296

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM---- 442
           V NA++ MYAKCGS   AR VF++M +R++ISWT++I+A+        A   F +M    
Sbjct: 297 VGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELE 356

Query: 443 ---KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499
                + + P+ + F+ +L AC+    +++G+ + +       +         +V+L+G+
Sbjct: 357 KNGSSQRVKPDALAFVTILNACADVSALEQGK-MVSEQAASCGLSSDKAVGTAVVNLYGK 415

Query: 500 ANLLREALELVETMPFAPNVVIWGSLMA 527
              + EA  + + +   P+V +W +++A
Sbjct: 416 CGEIEEARRIFDAVCSRPDVQLWNAMIA 443



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 190/393 (48%), Gaps = 37/393 (9%)

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  C    DA+  FD +  R++  W+ ++  +  +G   E L   E M+   V PD + 
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
               L +C    +L  G  +H+ ++D+ + +D  + + L+ MY  CG +  AK +F K  
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAK-- 118

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                              +E  R         ++I WS M   +A + +  EAL+ F  
Sbjct: 119 -------------------MERTR---------NVISWSIMAGAHALHGNVWEALRHFRF 150

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M + G+K  K  M++++SAC+   ++   + IH  I  + F  +L V NA++ MY +CG+
Sbjct: 151 MLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMYGRCGA 210

Query: 401 LESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           +E AR+VF+ M    R+V+SW  M++ +  +   ++A+  + +M+   + P+ VT++ +L
Sbjct: 211 VEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQ---LRPDKVTYVSLL 267

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            ACS A  V  GR +   + N+  +         +V ++ +     EA  + + M    +
Sbjct: 268 SACSSAEDVGLGRVLHKQIVND-ELEKNVIVGNALVSMYAKCGSHTEARAVFDKME-QRS 325

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           ++ W ++++A      +  A    +Q+L+L+ +
Sbjct: 326 IISWTTIISAYVRRRLVAEACHLFQQMLELEKN 358



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 166/357 (46%), Gaps = 45/357 (12%)

Query: 97  RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQT 156
           R K A++++ +M    L  D+ ++  +L A + AE +  G  +H          +  V  
Sbjct: 243 RGKDAIQLYQRM---QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGN 299

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM------- 209
            LV MY  CG   +AR +FDKM  R I+ W+ +I  Y +  L  E  +LF++M       
Sbjct: 300 ALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNG 359

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
               V+PD +    IL+AC+    L  G+ V E      ++ D  + + ++ +Y  CG +
Sbjct: 360 SSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEI 419

Query: 270 DMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           + A+ +FD V  + ++ +  AM++ Y++ GQ                             
Sbjct: 420 EEARRIFDAVCSRPDVQLWNAMIAVYAQFGQ----------------------------- 450

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR--IHLYIDKNAFGGDLR 386
               EALKLF  M++ G++PD  + +S++ AC+H G+ DQ +     +  +       ++
Sbjct: 451 --SHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQ 508

Query: 387 VNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKM 442
               + D+  + G L+ A E  E++  + + ++WTS++ A   H D + A    NK+
Sbjct: 509 HFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKL 565



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 158/329 (48%), Gaps = 8/329 (2%)

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           Y+      DA+  FD + +++L  W+ +++ +A +   +E L+    M+  G++PD VT 
Sbjct: 2   YAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTF 61

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
           ++ + +C     L    RIH  +  +    D +V+NA+++MY KCGSL  A+ VF +M R
Sbjct: 62  ITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMER 121

Query: 414 -RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
            RNVISW+ M  A A+HG+   AL  F  M    I       + +L ACS   LV +GR 
Sbjct: 122 TRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRM 181

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
           I + +        +      ++ ++GR   + EA ++ + M  A   V+  ++M +  VH
Sbjct: 182 IHSCIALS-GFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVH 240

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
            +         Q +QL PD    + LLS   +     +DVG  R   K+  I+ +     
Sbjct: 241 NDRGKDAIQLYQRMQLRPDKVTYVSLLSACSSA----EDVGLGRVLHKQ--IVNDELEKN 294

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYEKLNE 621
           + + N +        SH +   +++K+ +
Sbjct: 295 VIVGNALVSMYAKCGSHTEARAVFDKMEQ 323


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/524 (40%), Positives = 322/524 (61%), Gaps = 4/524 (0%)

Query: 203 LNLFEEMKMSNVEPDEMVLSKI---LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259
           L LF  +   N+     +L+ I   L A     +   G  VH   +    A D ++++ L
Sbjct: 112 LRLFPNLPRRNLHSFTFLLASISNHLDATDHRASSFLGSHVHALAVKAGAAGDLYVRNAL 171

Query: 260 ITMYANCGCMDMAKGLFDKV-LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
              Y  CG +   + +FD++  ++++V   A+++GY RAG V  AR +F++M  +D + W
Sbjct: 172 THFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSW 231

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           S ++ GY +      AL +F +M   G++ ++  +++ +SA A +G+L+  + +H  + +
Sbjct: 232 STLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHEVVQR 291

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
                 + V  A++DM++KCG +  AREVF+ M RR+V +W +MI   A HG  ++A+  
Sbjct: 292 TGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDAVEL 351

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F +  DE + P  +TF+GVL ACS  GLV EGR  F  M ++Y I P+ EHYGCMVDL G
Sbjct: 352 FWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVDLLG 411

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558
           RA L+ EA+EL+E M  AP+ V+WG++++AC+ H  ++L      +L++L+P HDG  VL
Sbjct: 412 RAGLVSEAIELIEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIELEPAHDGHYVL 471

Query: 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEK 618
           L++IYAK K+W +V E+RK M  RG  K    S +E    +++FL  D  HK + QIY  
Sbjct: 472 LASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLMEAQGNLHKFLVGDMDHKDSVQIYNM 531

Query: 619 LNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKN 678
           L+ +   L  AGYVPD+ S L D+ DEEK   I  HSE+LA+ YG I ++  S IRIVKN
Sbjct: 532 LDMINRRLADAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVTEVGSPIRIVKN 591

Query: 679 LRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           L+VC DCH F K+V+KV+ REI++RD +RFHH K+G CSC DYW
Sbjct: 592 LQVCGDCHEFSKMVTKVFNREIIVRDGSRFHHMKEGKCSCLDYW 635



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 205/497 (41%), Gaps = 86/497 (17%)

Query: 27  HMKQTHAQILKLSHSHHSQ-NSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVS 85
           H++Q HA++  L  +  S    LL  L       P    SS  Y LS+F    +  +  S
Sbjct: 40  HVQQAHARLAVLGLATASVLPHLLAALPRLPHPPPPDEASSSSYPLSLFRHSASASAFAS 99

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA--------RAEGLLEGM 137
           N  +R +     P   L++F  +    L     SF  +L +I+        RA   L G 
Sbjct: 100 NHLLRVLP---HPL-PLRLFPNLPRRNL----HSFTFLLASISNHLDATDHRASSFL-GS 150

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK-------------------- 177
            VH L  K G   D +V+  L   YG CG +   R +FD+                    
Sbjct: 151 HVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYVRA 210

Query: 178 ------------MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
                       M  RD V WS ++ GY + G  D  L +F +M    V  +E  +   L
Sbjct: 211 GMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTAL 270

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
           SA ++ G L +G  VHE +    + +  ++ + L+ M++ CGC+ +A+ +FD +  +++ 
Sbjct: 271 SAAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVF 330

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
              AM+ G +  G  +DA  +F + +++                               G
Sbjct: 331 AWNAMICGLASHGLGQDAVELFWRFLDE-------------------------------G 359

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
           + P  +T + V++AC+  G++ + +R   L +DK     ++     ++D+  + G +  A
Sbjct: 360 LWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEA 419

Query: 405 REVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACS 462
            E+ E M    + + W ++++A   H      +   NK+ + E         +  +YA  
Sbjct: 420 IELIEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIELEPAHDGHYVLLASIYA-- 477

Query: 463 HAGLVDEGREIFASMTN 479
            A   DE RE+   M++
Sbjct: 478 KAKKWDEVREVRKLMSS 494


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/625 (36%), Positives = 356/625 (56%), Gaps = 33/625 (5%)

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           P  AL+VF + L      D  +F   L A AR   L  G  V       G+  D FV + 
Sbjct: 90  PASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSS 148

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+ +Y   G + DA  +F +M  RD V WS M+ G+   G   + + ++  M+   V+ D
Sbjct: 149 LLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGD 208

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           E+V+  ++ AC+ A N+  G +VH  ++ + + +D                         
Sbjct: 209 EVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMD------------------------- 243

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                 +V +T++V  Y++ G ++ A  +F  MV ++ + WSAMISG+A+N    EAL+L
Sbjct: 244 ------VVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRL 297

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F  MQ  G++PD   ++S + AC+++G L   + +H +I +  F  +  +  A IDMY+K
Sbjct: 298 FRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSK 356

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CGSL SA+ +F  +  R++I W +MI     HG  ++AL  F +M +  + P+  TF  +
Sbjct: 357 CGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASL 416

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L A SH+GLV+EG+  F  M N + I P  +HY C+VDL  R+ L+ EA +L+ +M   P
Sbjct: 417 LSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEP 476

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
            V IW +L++ C  + ++EL E  A  +L+L PD  G L L+SN+YA  K+W  V ++RK
Sbjct: 477 TVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRK 536

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            MK+ G  K   CS IE+    + F+  D+SH Q ++I  K+ ++  E++  GY+P    
Sbjct: 537 LMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEF 596

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
              DLE+E K + + +HSE+LA+ +GL+++   + + I+KNLRVC DCH+ IK +SK+  
Sbjct: 597 VYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIAD 656

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           REIV+RD  RFHH+KDGVCSC+DYW
Sbjct: 657 REIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 195/429 (45%), Gaps = 56/429 (13%)

Query: 10  PLTLPTST----AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           P   P ST    A+S+C+ L  ++   +   +   + +  +  +   LL  ++       
Sbjct: 102 PAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYA----RWG 157

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           ++  A+ +F ++P       +  +     + +P  A++++ +M  +G+  D      +++
Sbjct: 158 AMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQ 217

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A   A  +  G  VHG   + G   D    T LV MY   G +  A  +F  M +R+ V 
Sbjct: 218 ACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVS 277

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           WS MI G+ QNG  DE L LF  M+ S ++PD   L   L ACS  G L  G +VH FI+
Sbjct: 278 WSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIV 337

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
                 +  L +  I MY+ CG +  A+ LF+ +  ++L++  AM++             
Sbjct: 338 -RRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIA------------- 383

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
                      C  A   G       Q+AL LF EM   GM+PD  T  S++SA +H G+
Sbjct: 384 -----------CCGAHGRG-------QDALTLFQEMNETGMRPDHATFASLLSALSHSGL 425

Query: 366 LDQAQRIHLYIDK--NAFGGDLRVNNA------IIDMYAKCGSLESAREVFERMRRRNVI 417
           +++ +   L+  +  N F    ++  A      ++D+ A+ G +E A ++   M+    +
Sbjct: 426 VEEGK---LWFGRMVNHF----KITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTV 478

Query: 418 S-WTSMINA 425
           + W ++++ 
Sbjct: 479 AIWVALLSG 487



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 114/235 (48%), Gaps = 6/235 (2%)

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           ++    P  AL++F  +     +PD  T    +SACA LG L   + +        +  D
Sbjct: 84  HSRRGSPASALRVFRALPPAA-RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
           + V ++++ +YA+ G++  A +VF RM RR+ ++W++M+  F   G   +A+  + +M++
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
           + +  + V  IGV+ AC+ A  V  G  +   +   + +         +VD++ +  LL 
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLL-RHGMRMDVVTATSLVDMYAKNGLLD 261

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALV 557
            A  +   M    N V W ++++    +G+ +  L  F   Q   + PD  GALV
Sbjct: 262 VACRVFGLM-VHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPD-SGALV 314


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/600 (36%), Positives = 350/600 (58%), Gaps = 31/600 (5%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           IL+  AR   ++E    HG   ++    D  +   L+  Y  CG +  AR +FD M  R 
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +V W+ MI  Y +N +  E L++F EM+    +  E  +S +LSAC              
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACG------------- 173

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
                 V  DA L+   +   +   C+D+           NL V TA++  Y++ G ++D
Sbjct: 174 ------VNCDA-LECKKLHCLSVKTCIDL-----------NLYVGTALLDLYAKCGMIKD 215

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           A  +F+ M +K  + WS+M++GY +N + +EAL L+   Q   ++ ++ T+ SVI AC++
Sbjct: 216 AVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSN 275

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           L  L + +++H  I K+ FG ++ V ++ +DMYAKCGSL  +  +F  ++ +N+  W ++
Sbjct: 276 LAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTI 335

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I+ FA H   +  +I F KM+ + + PN VTF  +L  C H GLV+EGR  F  M   Y 
Sbjct: 336 ISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYG 395

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           + P   HY CMVD+ GRA LL EA EL++++PF P   IWGSL+A+CRV+  +ELAE AA
Sbjct: 396 LSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAA 455

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           ++L +L+P++ G  VLLSNIYA +K+W+++ + RK +++  + K R  S I++ ++V+ F
Sbjct: 456 EKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTF 515

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
              +  H +  +I   L+ ++ + +  GY P +   L D+E  +K E+++ HSEKLAL +
Sbjct: 516 SVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVF 575

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           GL+   + S +RI+KNLR+C DCH F+K  S    R I++RD  RFHH+ DG CSC D+W
Sbjct: 576 GLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 154/328 (46%), Gaps = 34/328 (10%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I   + +     AL +FL+M NEG     F+   +L A       LE  ++H L  K
Sbjct: 131 NTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVK 190

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
                + +V T L+ +Y  CG I DA  +F+ M  +  V WS M+ GY QN  ++E L L
Sbjct: 191 TCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLL 250

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           +   +  ++E ++  LS ++ ACS    L  G+ +H  I  +    +  + S+ + MYA 
Sbjct: 251 YRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAK 310

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
           CG +  +  +F +V  KNL +   ++SG                               +
Sbjct: 311 CGSLRESYIIFSEVQEKNLELWNTIISG-------------------------------F 339

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385
           A++  P+E + LF +MQ  GM P++VT  S++S C H G++++ +R    + +  +G   
Sbjct: 340 AKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRF-FKLMRTTYGLSP 398

Query: 386 RV--NNAIIDMYAKCGSLESAREVFERM 411
            V   + ++D+  + G L  A E+ + +
Sbjct: 399 NVVHYSCMVDILGRAGLLSEAYELIKSI 426



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 87/168 (51%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A+ +F  +    S   +  +     +   + AL ++ +     L  ++F+   ++ A + 
Sbjct: 216 AVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSN 275

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L+EG Q+H +  K GFGS+ FV +  V MY  CG + ++ ++F ++  +++  W+ +
Sbjct: 276 LAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTI 335

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           I G+ ++    EV+ LFE+M+   + P+E+  S +LS C   G +  G
Sbjct: 336 ISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEG 383


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/559 (37%), Positives = 332/559 (59%), Gaps = 33/559 (5%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           G +  AR +FD+M       W+ ++ GY +NG+ D+ ++++ +M+   V PD      ++
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
            AC+    L  G  +H  ++ + +   A +++ L+ MY                      
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYV--------------------- 181

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
                     + G++  A  +F  MVE+DL+ W+A+I+   +     +AL+ F EM + G
Sbjct: 182 ----------KFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAG 231

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
           +KPD VT++S +SAC HLG L+  + I+ +  +     ++ V+NA +DM AKCG ++ A 
Sbjct: 232 IKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAM 291

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
            +F+ M +RNVISW+++I  +A++G++  AL  F++MK++ + PN VTF+ VL ACSH G
Sbjct: 292 NLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTG 351

Query: 466 LVDEGREIFASM--TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
            V+EG + F  M  +++ NI P+ EHY CMVDL GR+  L EA   ++ MP   +  IWG
Sbjct: 352 RVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWG 411

Query: 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
           +L+ AC +H  I+L +  A  L +L P+     VLLSN+YA   RW  V ++R+ MK++G
Sbjct: 412 ALLGACAIHQNIKLGQHVADLLFELAPEIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKG 471

Query: 584 ILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLE 643
             K  A S +E N E++     D+SH Q+  I  KL +++ ++K  GY+P+  S   D+E
Sbjct: 472 ARKVAAYSSVEFNGEIHILYGGDKSHPQSASILAKLEDLLKQMKSMGYIPETDSVFHDVE 531

Query: 644 DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIR 703
           DEEK   +  HSEKLA+ + LI+      IR++KNLR+C DCH F KLVS++  REI++R
Sbjct: 532 DEEKESTLSTHSEKLAIAFSLINGSPKFPIRVMKNLRICGDCHTFCKLVSRITMREIIMR 591

Query: 704 DRTRFHHYKDGVCSCKDYW 722
           D+ RFHH+K+G+CSCKD+W
Sbjct: 592 DKNRFHHFKNGICSCKDFW 610



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 177/374 (47%), Gaps = 41/374 (10%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           + YA  +F ++  P   + N  ++    +  P  A+ V+ KM + G+  D F+FP ++KA
Sbjct: 85  MSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKA 144

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            A    L  G+ +HG   K G      V+T L+ MY   G++  A  +F  M  RD+V W
Sbjct: 145 CAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAW 204

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +I    Q G   + L  F EM M+ ++PD + +   LSAC   G L  GE ++EF  +
Sbjct: 205 NALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFARE 264

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
             +  +  + +  + M A CG MD A  LFD++  +N++  + ++ GY+  G+ E     
Sbjct: 265 EGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESE----- 319

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
                                     +AL LF+ M+  G++P+ VT L+V+SAC+H G +
Sbjct: 320 --------------------------KALALFSRMKNQGVQPNYVTFLAVLSACSHTGRV 353

Query: 367 DQAQRIHLYIDKNAFGGDLRVN------NAIIDMYAKCGSLESAREVFERMR-RRNVISW 419
           ++  +   Y +  A   D  +         ++D+  + G LE A    + M    +   W
Sbjct: 354 NEGWQ---YFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIW 410

Query: 420 TSMINAFAIHGDAR 433
            +++ A AIH + +
Sbjct: 411 GALLGACAIHQNIK 424


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/519 (41%), Positives = 313/519 (60%), Gaps = 30/519 (5%)

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            F  M  + V P++     +L +C+   G+   G   H   +    A D ++ +TLI MY
Sbjct: 122 FFPLMLRAAVAPNKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNTLIHMY 181

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
           +  G                             AG + DAR +F++M  +  + WSAMI 
Sbjct: 182 SCFG-----------------------------AGFLGDARNVFERMPRESAVTWSAMIG 212

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           GY       +A+ LF  MQV G++PD+VT++ V++A A LG L+  + +  ++++   G 
Sbjct: 213 GYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGK 272

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
            + + NA+ID  AKCG ++ A  VFE M  R V+SWTS+I+A A+ G  + A+  F +MK
Sbjct: 273 SVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMK 332

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
              + P+ V FIGVL ACSHAG+VDEGR  F SM  EY I PK EHYGCMVD+FGRA ++
Sbjct: 333 AVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMV 392

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563
            + LE V  MP  PN +IW +L+AACR HG +EL E   + LL   P H+   V+LSN+Y
Sbjct: 393 EQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEFPAHEANYVMLSNVY 452

Query: 564 AKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVI 623
           A  +RW++  E+R+ M +RGI K   CS +E++ EV+EF+  D SH Q  +IY  + E+ 
Sbjct: 453 ALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQYKEIYRMVEEMS 512

Query: 624 SELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCE 683
            EL+  G++      L+DL++E+K   + WHSEKLA+ + L+ +   + +R+VKNLRVC 
Sbjct: 513 RELRRIGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCS 572

Query: 684 DCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           DCH  IK +S+VY REIV+RDR+RFH +KDG CSCKD+W
Sbjct: 573 DCHAAIKCISQVYNREIVVRDRSRFHRFKDGSCSCKDFW 611



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 197/445 (44%), Gaps = 52/445 (11%)

Query: 2   STLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILK-----LSHSHHSQNSLLLKLLLTS 56
           +T +  + P   P+  A   C  L     T A +L+     L    HS   ++ +L   S
Sbjct: 14  TTTAPASNPTASPSRAAEQHCLRLLERSSTPASLLQSFAFLLKSGLHSNPLVVTRLFAAS 73

Query: 57  FSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRP---KHALKVFLKMLNEGL 113
            S        L  +L +   +P     V N  IR    S  P   + A   F  ML   +
Sbjct: 74  ASAAPALLEPLVSSL-LGPSLPLDAFLV-NTLIRTHVTSPFPSARRRAAAFFPLMLRAAV 131

Query: 114 TIDRFSFPPILKAIARAEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYG--ACGKILD 170
             ++F+FP +LK+ A   G  + G+Q H    K GF +D +V   L+ MY     G + D
Sbjct: 132 APNKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGD 191

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           AR +F++M     V WS MI GY + GL  + + LF  M++S V PDE+ +  +L+A + 
Sbjct: 192 ARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAAD 251

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
            G L     V  F+    +     L + LI   A CG                       
Sbjct: 252 LGALELTRWVGRFVEREGIGKSVTLCNALIDTLAKCG----------------------- 288

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
                    V+ A  +F+ M E+ ++ W+++I   A     +EA+ +F EM+  G+ PD 
Sbjct: 289 --------DVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDD 340

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYID--KNAFGGDLRVNN--AIIDMYAKCGSLESARE 406
           V  + V++AC+H G++D+ +    Y D  K  +G + ++ +   ++DM+ + G +E   E
Sbjct: 341 VAFIGVLTACSHAGMVDEGRG---YFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLE 397

Query: 407 VFERM-RRRNVISWTSMINAFAIHG 430
               M  + N I W +++ A   HG
Sbjct: 398 FVRAMPMKPNPIIWRTLVAACRAHG 422



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 3/129 (2%)

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHL-GVLDQAQRIHLYIDKNAFGGDLRVNNA 390
           + A   F  M    + P+K T   ++ +CA L G  D   + H    K  F  D  V+N 
Sbjct: 117 RRAAAFFPLMLRAAVAPNKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNT 176

Query: 391 IIDMYA--KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           +I MY+    G L  AR VFERM R + ++W++MI  +   G + +A++ F  M+   + 
Sbjct: 177 LIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVR 236

Query: 449 PNGVTFIGV 457
           P+ VT IGV
Sbjct: 237 PDEVTVIGV 245


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/679 (35%), Positives = 375/679 (55%), Gaps = 58/679 (8%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKM----------LNEG------L 113
           A ++F ++  P   +    I   + ++R  HAL++F +M          + +G      L
Sbjct: 14  ARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADL 73

Query: 114 TIDRFSFP-----PILKAIARAEGLLEGMQVH---GLGTKLGFGSDPFVQTGLVGMYGAC 165
           T+ R  F       ++       G L+  ++    GL  K+ F  D      ++  Y   
Sbjct: 74  TMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPF-RDIAAWNSMIYGYCCN 132

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE--PDEMVLSK 223
           G++ D   +F +M  R+++ W+ MI G  Q+G  +E L LF +M    VE  P       
Sbjct: 133 GRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCC 192

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           +++AC+ A  L  G  +H  +     + DA++ + LIT YANC                 
Sbjct: 193 VITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCK---------------- 236

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
                          Q+ED+  +F   +  +++ W+A+++GY  N   ++ALK+F EM  
Sbjct: 237 ---------------QMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMR 281

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
            G+ P++ +  S +++C  L  LD  + IH    K     D+ V N++I MY +CG+L  
Sbjct: 282 EGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLND 341

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
              +F+R+ ++N++SW S+I   A HG    AL FFN+M    ++P+ +TF G+L ACSH
Sbjct: 342 GVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSH 401

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
           +G+  +GR +F   +   +   K +HY CMVD+ GR+  L EA EL+  MP   N ++W 
Sbjct: 402 SGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWL 461

Query: 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
            L++AC +H ++E+AE AAK ++ L+P    A VLLSN+YA   RW DV  +R+ MK+RG
Sbjct: 462 VLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRG 521

Query: 584 ILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLE 643
           I K+   S I +     EFL+ DRSH  +D+IY+KL  +  +LK  GYVPD   AL D+E
Sbjct: 522 ITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVE 581

Query: 644 DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIR 703
           DE+K  ++ +HSE+LA+ +GLIS+ + S I ++KNLRVC DCH+ IKL++K+  R+I++R
Sbjct: 582 DEQKEVMLSYHSERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVR 641

Query: 704 DRTRFHHYKDGVCSCKDYW 722
           D TRFHH+ DG CSC DYW
Sbjct: 642 DSTRFHHFMDGRCSCGDYW 660



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 202/398 (50%), Gaps = 14/398 (3%)

Query: 167 KILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS 226
           +I +AR +FDK+S+ D+  +++MI GY +N  FD  L LF EM + +V    +  + ++ 
Sbjct: 10  RIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDV----VSWNSMIK 65

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV 286
            C    +L+    + + + + +V       +T+I  +   G +++A+GLF K+  +++  
Sbjct: 66  GCFDCADLTMARKLFDEMPERSVV----SWTTMINGFLQFGKIEVAEGLFYKMPFRDIAA 121

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG- 345
             +M+ GY   G+VED   +F +M  +++I W++MI G  ++   +EAL LF +M  CG 
Sbjct: 122 WNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGV 181

Query: 346 -MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
            +KP   T   VI+ACA+   L Q  +IH ++ K  +  D  ++ A+I  YA C  +E +
Sbjct: 182 EVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDS 241

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
             VF      NV+ WT+++  + ++    +AL  F +M  E + PN  +F   L +C   
Sbjct: 242 LRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGL 301

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGS 524
             +D GREI  +   +  +         ++ ++ R   L + + + + +    N+V W S
Sbjct: 302 EALDWGREIHTAAV-KLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNS 359

Query: 525 LMAACRVH--GEIELAEFAAKQLLQLDPDHDGALVLLS 560
           ++  C  H  G   LA F       ++PD      LLS
Sbjct: 360 VIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLS 397



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 165/348 (47%), Gaps = 16/348 (4%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +PT        TA ++ S+L    Q HA + KL +S    ++ +   L+T ++       
Sbjct: 184 KPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSF---DAYISAALITFYANCKQMED 240

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           SL     +F         +    +     + + + ALKVF +M+ EG+  ++ SF   L 
Sbjct: 241 SL----RVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALN 296

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           +    E L  G ++H    KLG  +D FV   L+ MY  CG + D  ++F ++S ++IV 
Sbjct: 297 SCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVS 356

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ +I G  Q+G     L  F +M  S VEPDE+  + +LSACS +G    G  + ++  
Sbjct: 357 WNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFS 416

Query: 246 DNN---VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVE 301
           +N    V LD +  + ++ +    G ++ A+ L   + +K N +V   ++S  +   ++E
Sbjct: 417 ENKSAEVKLDHY--ACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLE 474

Query: 302 DARLIFDQMVEKDLICWSAMI---SGYAENNHPQEALKLFNEMQVCGM 346
            A      +++ +  C SA +   + YA  +   +  ++  EM+  G+
Sbjct: 475 VAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGI 522


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/603 (36%), Positives = 335/603 (55%), Gaps = 32/603 (5%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +   + A A+++ L +  ++H       F  D F+   L+ MY  C  +LDAR +FD+M 
Sbjct: 54  YRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMR 113

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            +D+V W+ +I GY QN +  E + L   M     +P+    + +L A     +   G  
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQ 173

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H   +      D ++ S L+ MYA                               R G+
Sbjct: 174 IHALAVKCGWHEDVYVGSALLDMYA-------------------------------RCGK 202

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           ++ A  +FD++  K+ + W+A+ISG+A     + AL  F EM   G +    T  SV S+
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSS 262

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
            A LG L+Q + +H ++ K+       V N ++DMYAK GS+  AR+VF+R+  +++++W
Sbjct: 263 IARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTW 322

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            SM+ AFA +G  + A+  F +M+   +  N +TF+ +L ACSH GLV EG+  F  M  
Sbjct: 323 NSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYF-EMMK 381

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
           EY++ P+ +HY  +V L GRA LL  AL  +  MP  P   +WG+L+AACR+H   ++ +
Sbjct: 382 EYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQ 441

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
           FAA  + +LDPD  G  VLL NIYA   +W     +R  MK  G+ KE ACS +EM N V
Sbjct: 442 FAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSV 501

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLA 659
           + F+  D +H Q ++IY+   E+  +++  GYVPD+   L+ ++D+EK   + +HSEKLA
Sbjct: 502 HMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLA 561

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           L + LI     + IRI+KN+R+C DCH+  K +SKV+ REIV+RD  RFHH+  G CSC 
Sbjct: 562 LAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCG 621

Query: 720 DYW 722
           DYW
Sbjct: 622 DYW 624



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 158/332 (47%), Gaps = 33/332 (9%)

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
           VL   + +    + P   V    ++AC+++ NL     +H  +  +  A DA L ++LI 
Sbjct: 35  VLRDLDLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIH 94

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
           MY  C                                 V DAR +FDQM  KD++ W+++
Sbjct: 95  MYCKCR-------------------------------SVLDARNVFDQMRRKDMVSWTSL 123

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF 381
           I+GYA+N+ P EA+ L   M     KP+  T  S++ A          ++IH    K  +
Sbjct: 124 IAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGW 183

Query: 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNK 441
             D+ V +A++DMYA+CG ++ A  VF+++  +N +SW ++I+ FA  GD  +AL+ F +
Sbjct: 184 HEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAE 243

Query: 442 MKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501
           M     +    T+  V  + +  G +++G+ + A +         +     ++D++ ++ 
Sbjct: 244 MLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVG-NTLLDMYAKSG 302

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            + +A ++ + +    ++V W S++ A   +G
Sbjct: 303 SMIDARKVFDRVD-NKDLVTWNSMLTAFAQYG 333



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 101/428 (23%), Positives = 188/428 (43%), Gaps = 39/428 (9%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           PT  +     TA +   +L   ++ HA    L  S  + ++ L   L+  +        S
Sbjct: 49  PTPRVYRSFITACAQSKNLEDARKIHAH---LGSSRFAGDAFLDNSLIHMY----CKCRS 101

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           +  A ++F Q+           I   + +  P  A+ +   ML      + F+F  +LKA
Sbjct: 102 VLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKA 161

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
                    G Q+H L  K G+  D +V + L+ MY  CGK+  A  +FDK+  ++ V W
Sbjct: 162 AGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSW 221

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +I G+ + G  +  L  F EM  +  E      S + S+ +R G L  G+ VH  +I 
Sbjct: 222 NALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIK 281

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
           +   L A + +TL+ MYA  G M  A+ +FD+V  K+LV   +M++ +++ G        
Sbjct: 282 SRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGL------- 334

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
                                    +EA+  F EM+  G+  +++T L +++AC+H G++
Sbjct: 335 ------------------------GKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLV 370

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE-VFERMRRRNVISWTSMINA 425
            + +R    + +     ++     ++ +  + G L  A   +F+         W +++ A
Sbjct: 371 KEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAA 430

Query: 426 FAIHGDAR 433
             +H +A+
Sbjct: 431 CRMHKNAK 438


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/653 (35%), Positives = 364/653 (55%), Gaps = 38/653 (5%)

Query: 75  SQIPAPPSRVS-----NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           S + A PS  S     N  + A S +  P  AL+VF + L      D  +F   L A AR
Sbjct: 65  STLAASPSSRSCIPAWNALLAARSRAGSPGAALRVF-RALPSSARPDSTTFTLALTACAR 123

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L     V       G+G D FV + L+ +Y  CG + DA  +FD M  +D V WS M
Sbjct: 124 LGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTM 183

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           + G+   G   E L ++  M+   V  DE+V+  ++ AC+  GN   G +VH   + + +
Sbjct: 184 VAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGM 243

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            +D                               +V++T++V  Y++ G  + AR +F  
Sbjct: 244 RMD-------------------------------VVIATSLVDMYAKNGHFDVARQVFRM 272

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M  ++ + W+A+ISG+A+N H  EAL LF EM   G++PD   ++S + ACA +G L   
Sbjct: 273 MPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLG 332

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + IH +I +        +  A++DMY+KCGSLESAR++F ++  R+++ W +MI     H
Sbjct: 333 KSIHGFILRR-LEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTH 391

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G   +AL  F ++ +  I P+  TF  +L A SH+GLV+EG+  F  M  E+ I P  +H
Sbjct: 392 GCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKH 451

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
             C+VDL  R+ L+ EA E++ +M   P + IW +L++ C  + ++EL E  AK++L+  
Sbjct: 452 CVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQ 511

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P+  G L L+SN+YA  K+W  V E+RK MK+ G  K    S IE++   + F+  D+SH
Sbjct: 512 PEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSH 571

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
            Q  +I + ++++  E++  GYVP       DL+++ K +++ +HSE+LA+ +GL+++  
Sbjct: 572 PQHQEILKMISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSP 631

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + + I+KNLRVC DCH+ IK +SK+  REIV+RD  RFHH+KDG CSC DYW
Sbjct: 632 GTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 194/428 (45%), Gaps = 44/428 (10%)

Query: 3   TLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT 62
            L    +P +   + A+++C+ L  +    A  ++   + + ++  +   LL  +S    
Sbjct: 102 ALPSSARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYS---- 157

Query: 63  TPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
              ++  A+ +F  +P       +  +     + RP  AL ++ +M   G+  D      
Sbjct: 158 RCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVG 217

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +++A         G  VHG   + G   D  + T LV MY   G    AR +F  M YR+
Sbjct: 218 VIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRN 277

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
            V W+ +I G+ QNG  DE L+LF EM  S ++PD   L   L AC+  G L  G+++H 
Sbjct: 278 AVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHG 337

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           FI+   +     L + ++ MY+ CG ++ A+ LF+K+  ++LV+                
Sbjct: 338 FIL-RRLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVL---------------- 380

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
                          W+AMI+    +    +AL LF E+   G+KPD  T  S++SA +H
Sbjct: 381 ---------------WNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSH 425

Query: 363 LGVLDQAQRIHLYIDK--NAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMRRRNVIS 418
            G++++ +    + D+    FG +    +   ++D+ A+ G +E A E+   M     I 
Sbjct: 426 SGLVEEGK---FWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIP 482

Query: 419 -WTSMINA 425
            W ++++ 
Sbjct: 483 IWVALLSG 490



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 160/347 (46%), Gaps = 20/347 (5%)

Query: 284 LVVSTA------MVSGYSRAGQVEDAR--LIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           LVVS++      + + Y+R G ++ A   L         +  W+A+++  +    P  AL
Sbjct: 38  LVVSSSQNLFPSLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAAL 97

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           ++F  +     +PD  T    ++ACA LG LD A+ + +      +G D+ V +A++ +Y
Sbjct: 98  RVFRALP-SSARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVY 156

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           ++CG++  A  VF+ M R++ ++W++M+  F   G    AL  +++M++  +  + V  +
Sbjct: 157 SRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMV 216

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
           GV+ AC+  G    G  +       + +         +VD++ +      A ++   MP+
Sbjct: 217 GVIQACTLTGNTRMGASVHGRFL-RHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPY 275

Query: 516 APNVVIWGSLMA--ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573
             N V W +L++  A   H +  L  F       L PD  GALV  S + A      DVG
Sbjct: 276 R-NAVSWNALISGFAQNGHADEALDLFREMSTSGLQPD-SGALV--SALLA----CADVG 327

Query: 574 ELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLN 620
            L+      G +  R   +  +   V +  +   S +   +++ KL+
Sbjct: 328 FLKLGKSIHGFILRRLEFQCILGTAVLDMYSKCGSLESARKLFNKLS 374


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/548 (39%), Positives = 332/548 (60%), Gaps = 37/548 (6%)

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL--QSTLITMYANCG 267
           +   + PD    +  L A + + +L  G  +H     +    DAH+   +TLI+MYA CG
Sbjct: 95  RQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRH--GFDAHIFVGTTLISMYAECG 152

Query: 268 CMDMAKGLFDKVL-------------------------------LKNLVVSTAMVSGYSR 296
               A+ +FD++                                ++NL     M++GY++
Sbjct: 153 DSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAK 212

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
           AG++  AR +F +M  +D + WS MI G+A N    EA   F E+    ++ ++V++  V
Sbjct: 213 AGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGV 272

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRN 415
           +SACA  G  +  + +H +++K  F     VNNA+ID Y+KCG++  AR VF+ M   R+
Sbjct: 273 LSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARS 332

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           ++SWTS+I   A+HG    A+  F++M++  + P+G+TFI +LYACSH+GLV+EG  +F+
Sbjct: 333 IVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFS 392

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
            M N Y I P  EHYGCMVDL+GRA  L++A E +  MP +PN +IW +L+ AC +HG I
Sbjct: 393 KMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNI 452

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           E+AE    +L ++DPD+ G  VLLSN+YA   +W+DV  +R++M E  + K    S IE+
Sbjct: 453 EMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEI 512

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKP-AGYVPDIHSALVDLEDEEKREVILWH 654
           +  +Y F+  ++ ++ T++ +EKL E++  L+  AGY P + S L D+E+EEK + +  H
Sbjct: 513 DKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEEEKEDSVSKH 572

Query: 655 SEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDG 714
           SEKLA  +G+    K   +RIVKNLRVC DCH  +KL+SKVY  EI++RDR+RFH +KDG
Sbjct: 573 SEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKDG 632

Query: 715 VCSCKDYW 722
            CSC+DYW
Sbjct: 633 FCSCRDYW 640



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 136/478 (28%), Positives = 239/478 (50%), Gaps = 60/478 (12%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           +S CSSL   KQ HAQI K     H+   +  KLLL       T   +L+YAL +F   P
Sbjct: 9   LSKCSSLKPTKQIHAQICKTGL--HTDPLVFGKLLL---HCAITISDALHYALRLFHHFP 63

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPILKAIARAEGLLEGM 137
            P + + N  IR++S S  P  +L  F+++  +  L+ D F+F   LKA+A +  L  G+
Sbjct: 64  NPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGI 123

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           Q+H    + GF +  FV T L+ MY  CG    AR +FD+MS  ++V W+ ++   F+ G
Sbjct: 124 QLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCG 183

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV-HEFIIDNNVALDAHLQ 256
             +   ++F  M + N+       + +L+  ++AG L     V +E  + + V+      
Sbjct: 184 DVEGAQDVFGCMPVRNLTS----WNGMLAGYAKAGELGLARRVFYEMPLRDEVSW----- 234

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNL-------------------------------- 284
           ST+I  +A+ GC D A G F ++L + +                                
Sbjct: 235 STMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEK 294

Query: 285 -------VVSTAMVSGYSRAGQVEDARLIFDQM-VEKDLICWSAMISGYAENNHPQEALK 336
                   V+ A++  YS+ G V  ARL+F  M V + ++ W+++I+G A +   +EA++
Sbjct: 295 AGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQ 354

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDM 394
           LF+EM+  G++PD +T +S++ AC+H G++++   +   + KN +G +  + +   ++D+
Sbjct: 355 LFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKM-KNLYGIEPAIEHYGCMVDL 413

Query: 395 YAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           Y +   L+ A E    M    N I W +++ A +IHG+   A +   ++ +   D +G
Sbjct: 414 YGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSG 471


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/599 (38%), Positives = 360/599 (60%), Gaps = 13/599 (2%)

Query: 4   LSQPTKPLTLPTSTA------ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSF 57
           L +P   L   +ST       I S  S+  +K+ HA +++   +HH +N   +  ++ S+
Sbjct: 43  LRRPISRLFTSSSTTRKCQQIIKSGFSIKSIKEQHAHLIR---THHHKNPKSMSNVIKSY 99

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLK-MLNEGLTID 116
           +L  +  +   +A   F QI  P   + N  IR +S S  P  A+ ++   M N+G+  D
Sbjct: 100 ALSRSHLNKANFA---FIQIGQPTLLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGILGD 156

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
             +F  + KA +R + +L G   H    KLGFGS  F++  L+ MYG  G++  A+ +FD
Sbjct: 157 NLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFD 216

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
           KM  RD+V W+ +I GY Q   F EVL+LF  M+ +NV  D + + K++ ACS       
Sbjct: 217 KMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGV 276

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
            +++ ++I D +V +D +L ++LI MY   G +D+A+ +FD++  KN+V   AM++GY+ 
Sbjct: 277 VDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYAT 336

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
           AG +  A+ +F++M  +++I W+ MISG A+ N   +ALKLF EM    +KPD++T+ SV
Sbjct: 337 AGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSV 396

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           +SAC+HLG+LD  Q +H Y+ ++    D+ V NA+IDMY KCG ++ A EVF  M++++ 
Sbjct: 397 LSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDS 456

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           +SWTSMI   A++G   N    F++M  + + P   +FIG+L AC+HAGLVD+G E F S
Sbjct: 457 VSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFES 516

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           M + Y + P+ +HYGC+VDL  R+  L  A E ++ MP  P+VV+W  L++AC++H  + 
Sbjct: 517 MEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQMPVVPDVVLWRILLSACKLHRNLV 576

Query: 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           LAE A  +LL+LDP + G  VLLSN YA   RW D   +R  M    + K  + S IE+
Sbjct: 577 LAEIATSKLLELDPSNSGNYVLLSNTYAGSDRWDDASRMRDLMVVGDVQKPSSWSSIEV 635


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/622 (37%), Positives = 359/622 (57%), Gaps = 40/622 (6%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLV--GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           Q+HG   K G  +D +    L+          +  AR +       D   ++ ++ GY +
Sbjct: 190 QIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYSE 249

Query: 196 NGLFDEVLNLF-EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           +      + +F E M+   + PD    + ++ A +   +L  G  +H   + +   LD+H
Sbjct: 250 SDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKH--GLDSH 307

Query: 255 L--QSTLITMYANCGCMDMAKG-------------------------------LFDKVLL 281
           L   +TLI MY  CGC+  A+                                +FDK+L+
Sbjct: 308 LFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLV 367

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           +N      M++GY +AG++E A+ IF +M  +D + WS MI G++ N    E+   F E+
Sbjct: 368 RNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFREL 427

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
               M+P++V++  V+SAC+  G  +  + +H +++K+ +   + VNNA+IDMY++CG++
Sbjct: 428 LRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNV 487

Query: 402 ESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
             AR VFE M+ +R+++SWTSMI   A+HG    A+  FN+M +  + P+ ++FI +LYA
Sbjct: 488 PMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYA 547

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSHAGL+ EG   F+ M   Y+I P  EHYGCMVDL+GR+  L++A   +  MP  P  +
Sbjct: 548 CSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAI 607

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           +W +L+ AC  HG IELAE   ++L +LDP++ G LVLLSN+YA   +W+DV  +RKSM 
Sbjct: 608 VWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMI 667

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK-PAGYVPDIHSAL 639
            + I K  A S +E+   +Y+F   ++  +   + +EKL E+I  L+  AGY P++ SAL
Sbjct: 668 VQRIKKITAWSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAGYAPEVASAL 727

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
            D+E+EEK + +  HSEKLAL + L    K + IRIVKNLR+C DCH  +KL S+VY  E
Sbjct: 728 YDVEEEEKEDQVSKHSEKLALAFALARLPKGANIRIVKNLRICRDCHAVMKLTSRVYGVE 787

Query: 700 IVIRDRTRFHHYKDGVCSCKDY 721
           IVIRDR RFH +KDG CSC DY
Sbjct: 788 IVIRDRNRFHSFKDGSCSCGDY 809



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 125/496 (25%), Positives = 221/496 (44%), Gaps = 106/496 (21%)

Query: 22  CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPP 81
           C +L  + Q H   +K   S    +S  +  L+   ++  +   +L YA  +    P P 
Sbjct: 182 CKNLRALTQIHGFFIK---SGVDTDSYFIGKLILHCAISIS--DALPYARRLLLCFPEPD 236

Query: 82  SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIARAEGLLEGMQVH 140
           + + N  +R  S S  P +++ VF++M+ +G    D FSF  ++KA A    L  G Q+H
Sbjct: 237 AFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMH 296

Query: 141 GLGTKLGFGSDPFVQTGLVGMYGACG------KILD------------------------ 170
               K G  S  FV T L+GMYG CG      K+ D                        
Sbjct: 297 CQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVS 356

Query: 171 -ARLMFDKMSYRDIVPWSVMIDGYFQ-------------------------------NGL 198
            AR +FDKM  R+   W+VM+ GY +                               NG 
Sbjct: 357 GAREIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGS 416

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
           F+E  + F E+  + + P+E+ L+ +LSACS++G   +G+ +H F+  +  +    + + 
Sbjct: 417 FNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNA 476

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVS-TAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
           LI MY+ CG + MA+ +F+ +  K  +VS T+M++G +  G  E+A              
Sbjct: 477 LIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEA-------------- 522

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
                            +++FNEM   G+ PD+++ +S++ AC+H G++ + +  +    
Sbjct: 523 -----------------IRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEG-YFSKM 564

Query: 378 KNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARN 434
           K  +  +  V +   ++D+Y + G L+ A     +M      I W +++ A + HG+   
Sbjct: 565 KRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIEL 624

Query: 435 ALIFFNKMKDESIDPN 450
           A     ++ +  +DPN
Sbjct: 625 AEQVKQRLNE--LDPN 638


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/636 (35%), Positives = 368/636 (57%), Gaps = 22/636 (3%)

Query: 18  AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI 77
           A S C SL   +Q   ++ +   + ++ NS++  L    F         L  A S+F  +
Sbjct: 64  AYSKCGSLEDGRQVFDKMPQ--RNIYTWNSVVTGLTKLGF---------LDEADSLFRSM 112

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
           P       N  +   +   R + AL  F  M  EG  ++ +SF  +L A +    + +G+
Sbjct: 113 PERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGV 172

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           QVH L  K  F SD ++ + LV MY  CG + DA+ +FD+M  R++V W+ +I  + QNG
Sbjct: 173 QVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNG 232

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN-VALDAHLQ 256
              E L++F+ M  S VEPDE+ L+ ++SAC+    +  G+ VH  ++ N+ +  D  L 
Sbjct: 233 PAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILS 292

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           +  + MYA C  +  A+ +FD + ++N++  T+M+SGY+ A   + ARL+F +M E++++
Sbjct: 293 NAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVV 352

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            W+A+I+GY +N   +EAL LF  ++   + P   +  +++ ACA L  L    + H+++
Sbjct: 353 SWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHV 412

Query: 377 DKNAFG------GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
            K+ F        D+ V N++IDMY KCG +E    VF +M  R+ +SW +MI  FA +G
Sbjct: 413 LKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNG 472

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
               AL  F +M +    P+ +T IGVL AC HAG V+EGR  F+SMT ++ + P  +HY
Sbjct: 473 YGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHY 532

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
            CMVDL GRA  L EA  ++E MP  P+ VIWGSL+AAC+VH  I L ++ A++LL+++P
Sbjct: 533 TCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEP 592

Query: 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK 610
            + G  VLLSN+YA+  +W+DV  +RKSM++ G+ K+  CS I++    + F+  D+SH 
Sbjct: 593 SNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHP 652

Query: 611 QTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEE 646
           +  QI+  L+ +I+E++P       H+ +  L  EE
Sbjct: 653 RKKQIHSLLDILIAEMRP----EQDHTEIGSLSSEE 684



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 182/335 (54%), Gaps = 5/335 (1%)

Query: 217 DEMVLSKILSACSRAG-NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           D    +K+L +C ++  +  Y   VH  +I +  + +  +Q+ LI  Y+ CG ++  + +
Sbjct: 18  DSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQV 77

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           FDK+  +N+    ++V+G ++ G +++A  +F  M E+D   W++M+SG+A+++  +EAL
Sbjct: 78  FDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEAL 137

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
             F  M   G   ++ +  SV+SAC+ L  +++  ++H  I K+ F  D+ + +A++DMY
Sbjct: 138 CYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMY 197

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           +KCG++  A+ VF+ M  RNV+SW S+I  F  +G A  AL  F  M +  ++P+ VT  
Sbjct: 198 SKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLA 257

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP- 514
            V+ AC+    +  G+E+   +     +          VD++ + + ++EA  + ++MP 
Sbjct: 258 SVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317

Query: 515 ---FAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
               A   +I G  MAA      +   + A + ++
Sbjct: 318 RNVIAETSMISGYAMAASTKAARLMFTKMAERNVV 352



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 186/405 (45%), Gaps = 77/405 (19%)

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           VH    K GF ++ F+Q  L+  Y  CG + D R +FDKM  R+I  W+ ++ G  + G 
Sbjct: 42  VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101

Query: 199 FDEVLNLFEEM----------------------------KMSNVEP---DEMVLSKILSA 227
            DE  +LF  M                             M + E    +E   + +LSA
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           CS   +++ G  VH  I  +    D ++ S L+ MY+ CG ++ A+ +FD++  +N+V  
Sbjct: 162 CSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSW 221

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
            ++++ + + G   +A  +F  M+E  +                               +
Sbjct: 222 NSLITCFEQNGPAVEALDVFQMMLESRV-------------------------------E 250

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIIDMYAKCGSLESARE 406
           PD+VT+ SVISACA L  +   Q +H  + KN     D+ ++NA +DMYAKC  ++ AR 
Sbjct: 251 PDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARF 310

Query: 407 VFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL 466
           +F+ M  RNVI+ TSMI+ +A+    + A + F KM + ++    V++  ++   +  G 
Sbjct: 311 IFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNV----VSWNALIAGYTQNGE 366

Query: 467 VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
            +E   +F  +  E   P  Y            AN+L+   +L E
Sbjct: 367 NEEALSLFCLLKRESVCPTHYSF----------ANILKACADLAE 401


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/674 (33%), Positives = 375/674 (55%), Gaps = 43/674 (6%)

Query: 60  PTTTPSSLYYALSIFSQIP-----APPSRVSNKFIRAISWSHRPKHALK----VFL-KML 109
           P+  P     +L I S +P     A P+   ++F    S+ +    + +    VFL K+ 
Sbjct: 73  PSPAPKQPRVSLGIPSSLPFDVGLAFPTIAPSRFGTLTSFPNSSNDSTRTKVAVFLGKLH 132

Query: 110 NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL 169
           N  L  D      ++ AI+    +     +H    K    SD F+   LV MY   G   
Sbjct: 133 NSSLLADSI-VQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDE 191

Query: 170 DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM-SNVEPDEMVLSKILSAC 228
           DA+ +FD+M  RD+V W+ ++ G    G     LN F  M+  S  +P+E+ L  ++SAC
Sbjct: 192 DAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSAC 251

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
           +  G L  G+++H  ++   ++  A + ++LI MY   G +D A  L             
Sbjct: 252 AXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQL------------- 298

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
                             F++M  + L+ W++M+  +  N + ++ + LFN M+  G+ P
Sbjct: 299 ------------------FEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINP 340

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
           D+ TM++++ AC   G+  QA+ IH YI +  F  D+ +  A++++YAK G L ++ ++F
Sbjct: 341 DQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIF 400

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
           E ++ R+ I+WT+M+  +A+H   R A+  F+ M  E ++ + VTF  +L ACSH+GLV+
Sbjct: 401 EEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVE 460

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           EG++ F  M+  Y + P+ +HY CMVDL GR+  L +A EL+++MP  P+  +WG+L+ A
Sbjct: 461 EGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGA 520

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           CRV+G +EL +  A+QLL LDP      ++LSNIY+    W+   ++R  MKER + +  
Sbjct: 521 CRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNP 580

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
            CS IE  N+++ F+  D+ H ++D+I+ KL E+I ++  AG  P     L D+++E K 
Sbjct: 581 GCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEEVKV 640

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
           ++I  HSEKLA+ +GL+ +     + I KNLR+C DCH+  K  S +  R I+IRD  RF
Sbjct: 641 DMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRF 700

Query: 709 HHYKDGVCSCKDYW 722
           HH+ DG+CSC+DYW
Sbjct: 701 HHFADGLCSCRDYW 714



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 196/418 (46%), Gaps = 43/418 (10%)

Query: 18  AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI 77
           AISSC+S+++    HA+++K    ++S   +  +L+   F L          A  +F ++
Sbjct: 148 AISSCTSVSYCSAIHARVIK--SLNYSDGFIGDRLVSMYFKLGYDED-----AQRLFDEM 200

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPILKAIARAEGLLEG 136
           P       N  +  +S        L  F +M  E G   +  +   ++ A A    L EG
Sbjct: 201 PNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEG 260

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
             +HG+  KLG      V   L+ MYG  G +  A  +F++M  R +V W+ M+  +  N
Sbjct: 261 KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHN 320

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           G  ++ ++LF  MK + + PD+  +  +L AC+  G     E++H +I       D  + 
Sbjct: 321 GYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIA 380

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           + L+ +YA  G ++ ++ +F+++  ++ +  TAM++G                       
Sbjct: 381 TALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAG----------------------- 417

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
                   YA +   +EA+KLF+ M   G++ D VT   ++SAC+H G++++ ++ +  I
Sbjct: 418 --------YAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKK-YFEI 468

Query: 377 DKNAFGGDLRVN--NAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIHGD 431
               +  + R++  + ++D+  + G LE A E+ + M        W +++ A  ++G+
Sbjct: 469 MSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGN 526


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/562 (38%), Positives = 321/562 (57%), Gaps = 32/562 (5%)

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG + DAR +FDKM  RD+V W+ +I GY QN +  E + L  +M  +   P+   
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
            + +L A    G  S GE +H   +  N   D ++ S L+ MYA                
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYA---------------- 104

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                          R  Q++ A ++FD++V K+ + W+A+I+G+A     +  L  F E
Sbjct: 105 ---------------RCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAE 149

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           MQ  G      T  S+ SA A +G L+Q + +H ++ K+       V N ++ MYAK GS
Sbjct: 150 MQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGS 209

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +  AR+VF+RM +R++++W +M+ A A +G  + A+  F +++   I  N +TF+ VL A
Sbjct: 210 MVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTA 269

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSH GLV EG+  F  M  +YN+ P+ +HY   VDL GRA LL+EAL  V  MP  P   
Sbjct: 270 CSHGGLVKEGKHYF-DMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAA 328

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           +WG+L+ ACR+H   ++ ++AA  + +LDPD  G  VLL NIYA   +W D   +RK MK
Sbjct: 329 VWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMK 388

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
             G+ KE ACS +++ N V+ F+  D +H ++  IY    E+   +K AGYVP+    L+
Sbjct: 389 ATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLL 448

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
            + ++E+   + +HSEK+AL + LI+    + IRI+KN+R+C DCH+  K VSKV+ REI
Sbjct: 449 HINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREI 508

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           V+RD  RFHH+ +G CSC DYW
Sbjct: 509 VVRDTNRFHHFSEGSCSCGDYW 530



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 168/365 (46%), Gaps = 32/365 (8%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P+         I   + ++ P  A+ +   ML      + F+F  +LKA   
Sbjct: 11  ARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGA 70

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
             G   G Q+H L  K  +  D +V + L+ MY  C ++  A ++FD++  ++ V W+ +
Sbjct: 71  CGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNAL 130

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G+ +    +  L  F EM+ +         S + SA +R G L  G  VH  +I +  
Sbjct: 131 IAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQ 190

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            L A + +T++ MYA  G M  A+ +FD+                               
Sbjct: 191 KLTAFVGNTMLGMYAKSGSMVDARKVFDR------------------------------- 219

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M ++DL+ W+ M++  A+    +EA+  F E++ CG++ +++T LSV++AC+H G++ + 
Sbjct: 220 MDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEG 279

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR-EVFERMRRRNVISWTSMINAFAI 428
           +     +       ++    + +D+  + G L+ A   VF+         W +++ A  +
Sbjct: 280 KHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRM 339

Query: 429 HGDAR 433
           H +A+
Sbjct: 340 HKNAK 344


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/540 (38%), Positives = 334/540 (61%), Gaps = 10/540 (1%)

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           S M+  Y  +G  D  +++F  +       D      +L +     ++  G+ VH  I+ 
Sbjct: 109 SKMVAFYASSGDIDSSVSVFNGIG------DYFTFPFVLKSSVELLSVWMGKCVHGLILR 162

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
             +  D ++ ++LI +Y  CG ++ A  +FD + ++++    A+++GY+++G ++ A  I
Sbjct: 163 IGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAI 222

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM--QVCGMKPDKVTMLSVISACAHLG 364
           F++M  ++++ W+ MISGY+++   Q+AL LF+EM  +  G++P+ VT++SV+ ACA L 
Sbjct: 223 FERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLS 282

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVISWTSM 422
            L++ ++IH    +     +  V  A+  MYAKCGSL  AR  F+++ R  +N+I+W +M
Sbjct: 283 TLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTM 342

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I A+A +G    A+  F +M    I P+ +TF G+L  CSH+GLVD G + F  M+  Y+
Sbjct: 343 ITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYS 402

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           I P+ EHY C+ DL GRA  L EA +LV  MP      IWGSL+AACR H  +E+AE AA
Sbjct: 403 INPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAA 462

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           ++L  L+P++ G  VLLSN+YA+  RWQ+V +LR  +K +G  K   CS IE+N + + F
Sbjct: 463 RKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMF 522

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
           L  D SH Q  +IY  L  +  ++K AGY PD    L D+ +EEK   ++ HSEKLA+ +
Sbjct: 523 LGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAF 582

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           G++++  ++ +R+ KNLR+C DCH  +  +S++Y RE+++RD  RFHH+K G CSC DYW
Sbjct: 583 GILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 154/352 (43%), Gaps = 70/352 (19%)

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           D F+FP +LK+      +  G  VHGL  ++G   D +V T L+ +YG CG+I DA  +F
Sbjct: 133 DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVF 192

Query: 176 DKMSYRD-------------------------------IVPWSVMIDGYFQNGLFDEVLN 204
           D M+ RD                               IV W+ MI GY Q+GL  + L+
Sbjct: 193 DNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALS 252

Query: 205 LFEEM--KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           LF+EM  + S V P+ + +  +L AC++   L  G  +HE      +  +A +   L  M
Sbjct: 253 LFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAM 312

Query: 263 YANCGCMDMAKGLFDKVLL--KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
           YA CG +  A+  FDK+    KNL+    M++ Y+  G                      
Sbjct: 313 YAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYG---------------------- 350

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
                    H  +A+  F EM   G++PD +T   ++S C+H G++D   +   ++    
Sbjct: 351 ---------HGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMS-TT 400

Query: 381 FGGDLRVNN--AIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIH 429
           +  + RV +   + D+  + G L  A ++   M      S W S++ A   H
Sbjct: 401 YSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKH 452


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/618 (35%), Positives = 347/618 (56%), Gaps = 33/618 (5%)

Query: 106 LKMLNEG-LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA 164
           L ++N G L  +R  +  +L        L +G  +H       F  D  +   ++ MY  
Sbjct: 93  LDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAK 152

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
           CG + +A+ +FDKM  +D+V W+V+I GY Q+G   E L LF +M     +P+E  LS +
Sbjct: 153 CGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSL 212

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L A     +  +G  +H F +     ++ H+ S+L+ MYA                    
Sbjct: 213 LKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYA-------------------- 252

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
                      R   + +A++IF+ +  K+++ W+A+I+G+A     +  ++LF +M   
Sbjct: 253 -----------RWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQ 301

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
           G +P   T  SV +ACA  G L+Q + +H ++ K+       + N +IDMYAK GS++ A
Sbjct: 302 GFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDA 361

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
           ++VF R+ +++++SW S+I+ +A HG    AL  F +M    + PN +TF+ VL ACSH+
Sbjct: 362 KKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHS 421

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGS 524
           GL+DEG+  F  M  ++ I  +  H+  +VDL GRA  L EA + +E MP  P   +WG+
Sbjct: 422 GLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGA 480

Query: 525 LMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584
           L+ +CR+H  ++L  +AA+Q+ +LDP   G  VLLSNIYA   R  D  ++RK MKE G+
Sbjct: 481 LLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGV 540

Query: 585 LKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLED 644
            KE ACS +E+ NEV+ F+  D SH   ++I     ++  ++K  GYVPD    L  +  
Sbjct: 541 KKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQ 600

Query: 645 EEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRD 704
           +++   + +HSEKLAL + ++ +     IRI KN+R+C DCH+  K  S+V  REI++RD
Sbjct: 601 QDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRD 660

Query: 705 RTRFHHYKDGVCSCKDYW 722
             RFHH+  G+CSC+DYW
Sbjct: 661 TNRFHHFLHGMCSCRDYW 678



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 197/415 (47%), Gaps = 36/415 (8%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
           S  ++ C+ L  +KQ  A    +  S    + +LL  +L  ++       SL  A  +F 
Sbjct: 109 SKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYA----KCGSLEEAQDLFD 164

Query: 76  QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
           ++P          I   S S +   AL +F KML+ G   + F+   +LKA         
Sbjct: 165 KMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHH 224

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G Q+H    K G+  +  V + L+ MY     + +A+++F+ ++ +++V W+ +I G+ +
Sbjct: 225 GRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHAR 284

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
            G  + V+ LF +M     EP     S + +AC+ +G+L  G+ VH  +I +     A++
Sbjct: 285 KGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYI 344

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            +TLI MYA  G +  AK +F +++ +++V   +++SGY++ G   +A  +F+QM++  +
Sbjct: 345 GNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKV 404

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
                                          +P+++T LSV++AC+H G+LD+ Q     
Sbjct: 405 -------------------------------QPNEITFLSVLTACSHSGLLDEGQYYFEL 433

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           + K+     +  +  ++D+  + G L  A +  E M  +     W +++ +  +H
Sbjct: 434 MKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMH 488


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/477 (44%), Positives = 314/477 (65%), Gaps = 4/477 (0%)

Query: 250 ALDAH--LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
             D H  ++++LI+ Y  CG +  A+ +FD++L+K+++  T++V  YSR   +  A  +F
Sbjct: 188 GFDKHRFVENSLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVF 247

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
                KD++ W+AM++GYA+N  P +AL+ F +M V GM  D+V++   ISACA LG + 
Sbjct: 248 ALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVK 307

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           +A  +    ++N  G ++ V + ++DMYAKCG ++ AR+VFE M  +NV +++SMI   A
Sbjct: 308 RAAWVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLA 367

Query: 428 IHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
            HG A + +  FN M +   ++PN VTFIGVL ACSHAG+V EGR  FA M + Y I P 
Sbjct: 368 SHGRANDVIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPS 427

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            +HY CMVDL  R+ L+ EAL+LV++M   P+  +WG+L+ ACR+HG  E+A+ AA+ L 
Sbjct: 428 ADHYACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLF 487

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE-VYEFLTA 605
           +L+P+  G  VLLSN  A    W +V +LRK M+ RG+ K+ A S  E  +  V++F   
Sbjct: 488 RLEPEGIGNYVLLSNTLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFFAG 547

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           D +H    +I ++L E+  +L  AGYVP + S + ++ +EEK  +++ HSEKLAL +GL+
Sbjct: 548 DNTHPSMHEIKKRLLELREKLNLAGYVPILSSVVYNVSEEEKERLLMGHSEKLALSFGLL 607

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + +  S IRIVKNLR+CEDCH FI+LVSKV   EI++RD  RFHH++DG CSC  +W
Sbjct: 608 TLESRSSIRIVKNLRICEDCHLFIRLVSKVEPIEILVRDNMRFHHFRDGECSCGGFW 664



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 181/411 (44%), Gaps = 69/411 (16%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML---NEGLTIDRFSFP 121
           + L YA+++FS +  P   ++   +R    +  P    ++F ++       L    F+F 
Sbjct: 102 APLRYAVAVFSSLSPPDPFLAAALLRFAHLTQPPLETFRLFSRLRCAHGSDLPFLPFAFS 161

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLG-FGSDPFVQTGLVGMYGACGKILDARLMFDKM-- 178
           P+ K+ A A  L      H +   LG F    FV+  L+  Y ACG +  AR +FD+M  
Sbjct: 162 PLAKSAAAARSLHAAASAHAVSLLLGGFDKHRFVENSLISAYVACGDVGAARKVFDEMLV 221

Query: 179 -----------------------------SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
                                          +D+V W+ M+ GY QN +  + L  FE+M
Sbjct: 222 KDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQM 281

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
            ++ +  DE+ L+  +SAC++ G +     V E    N +  +  + S L+ MYA CG +
Sbjct: 282 AVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEIAERNGLGRNVVVGSGLVDMYAKCGLI 341

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
           D A+ +F+ +  KN+   ++M+ G +  G+  D   +F+ MV +                
Sbjct: 342 DEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRR---------------- 385

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389
                           ++P+ VT + V++AC+H G++ +  R +    K+ +G     ++
Sbjct: 386 --------------ADVEPNHVTFIGVLTACSHAGMVKEG-RYYFAQMKDRYGILPSADH 430

Query: 390 --AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALI 437
              ++D+ A+ G +  A ++ + M    +   W +++ A  IHG+   A I
Sbjct: 431 YACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKI 481


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/610 (36%), Positives = 357/610 (58%), Gaps = 4/610 (0%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS-SLYYALSIFSQI 77
           +  C S+ H+ Q HA +L  +H   +  S++ +L+ +  +L       +L +A  +F ++
Sbjct: 10  LQQCRSIRHLDQLHAHLL--AHGPSAVASVVPQLVASYCALSGRAGDVALCHARRMFDRV 67

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
           P P     N  IRA S S  P+ AL +   +L  G+  + F+ P +LKA +RA      +
Sbjct: 68  PDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEHAL 127

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS-YRDIVPWSVMIDGYFQN 196
             HG+  KLG+    FV   L+    + G + D+R +F +M+ +R++V W+ MI G  Q 
Sbjct: 128 ATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQA 187

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           G   E   LF EM+   V  D      +L  CS+ GNL  G  VH  ++ +   +D  L 
Sbjct: 188 GETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILG 247

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           + L+ MY  CG + MA   FD + +KN+V  T+M+   ++ G V+ AR  F+QM E+++I
Sbjct: 248 NALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNII 307

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            W+AMIS Y +     E L L+N M+  G+ PD+VT+  V+S     G L   + IH YI
Sbjct: 308 SWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYI 367

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
             +     + V N++IDMYA+CG ++++  +F  M  +N ISW  +I A A+HG A+ A+
Sbjct: 368 QDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAV 427

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
           +FF  M  ++  P+ +TF+G+L ACSH GL+++G+  F +M + YN+ P+ EHY CMVDL
Sbjct: 428 MFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHYACMVDL 487

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
            GR   L +A++L++ MP  P+VV+WG+L+ ACR+HG +E+ + A KQLL+L+  + G  
Sbjct: 488 LGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLELEGINGGLF 547

Query: 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           VL+SN+  + ++W+D+  LRK M++RG  K+   S IE+NN ++EF   D  H+ + QIY
Sbjct: 548 VLISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSIEINNSIHEFGVEDIRHESSSQIY 607

Query: 617 EKLNEVISEL 626
             ++++   L
Sbjct: 608 AAVDQLAYHL 617


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/602 (36%), Positives = 350/602 (58%), Gaps = 35/602 (5%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           I + + R   L EG QVH      G+    ++ T LV MY  CG + DA  + D M  R+
Sbjct: 42  ITECVGR-RALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPERN 100

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE--AV 240
           +V W+ MI GY QN    E  +LF  M  +  EP+E  L+ +L++C+ +  +   +   V
Sbjct: 101 VVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQV 160

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H F I  N  L   + S+L+ MYA                               R+  +
Sbjct: 161 HAFAIKKNFELHMFVGSSLLDMYA-------------------------------RSENI 189

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
           ++AR +FD +  +D++ ++ ++SGY      +EAL LF ++   GM+ ++VT   +++A 
Sbjct: 190 QEARRVFDMLPARDVVSYTTILSGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNAL 249

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           + L  +D  +++H  I +      + + N++IDMY+KCG L  +R VF+ M  R+V+SW 
Sbjct: 250 SGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWN 309

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +M+  +  HG A   +  F  M D+ + P+ VT + VL   SH GLVDEG ++F  +  E
Sbjct: 310 AMLMGYGRHGMAYEVVQLFRFMCDK-VKPDSVTLLAVLLGYSHGGLVDEGLDMFDHIVKE 368

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
            +     +HYGC++DL GR+  L +AL L++ MPF P   IWGSL+ ACRVH  + + EF
Sbjct: 369 QSTLLNTQHYGCVIDLLGRSGQLEKALLLIQKMPFQPTRAIWGSLLGACRVHANVHVGEF 428

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
            A++L  ++P++ G  V+LSNIYA  + W+DV  LRK M ++ ++KE   S + ++  ++
Sbjct: 429 VAQKLFDIEPENAGNYVILSNIYAAARMWKDVFRLRKLMLKKTVIKEPGRSWMILDKVIH 488

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
            F +++R H + + I  K+NE+ + +K AG+VPD+   L D++DE+K  ++L HSEKLA+
Sbjct: 489 TFHSSERFHPRKEDINVKINEIYAAIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAI 548

Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
            +GL+S+  D  I+++KNLR+C DCHNF K VSKVY REI +RD+ RFH   +G C+C D
Sbjct: 549 TFGLMSTPSDLTIQVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLITEGACTCGD 608

Query: 721 YW 722
           YW
Sbjct: 609 YW 610



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/440 (24%), Positives = 201/440 (45%), Gaps = 48/440 (10%)

Query: 17  TAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
            AI+ C    +L   +Q HA+++   +    + +L L    T   +      +L  A ++
Sbjct: 40  AAITECVGRRALREGRQVHARMVTAGY----RPALYLA---TRLVIMYARCGALEDAHNV 92

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
              +P          I   S + RP  A  +F+ ML  G   + F+   +L +   ++G+
Sbjct: 93  LDGMPERNVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGI 152

Query: 134 LEGM--QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
            +    QVH    K  F    FV + L+ MY     I +AR +FD +  RD+V ++ ++ 
Sbjct: 153 HQHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILS 212

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           GY + GL +E LNLF ++    ++ +++  S +L+A S   ++ YG+ VH  I+   +  
Sbjct: 213 GYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPF 272

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
              LQ++LI MY+ CG +  ++ +FD +  +++V   AM+ GY R G   +   +F  M 
Sbjct: 273 FMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFMC 332

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           +K                                +KPD VT+L+V+   +H G++D+   
Sbjct: 333 DK--------------------------------VKPDSVTLLAVLLGYSHGGLVDEGLD 360

Query: 372 IHLYIDK-NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIH 429
           +  +I K  +   + +    +ID+  + G LE A  + ++M  +   + W S++ A  +H
Sbjct: 361 MFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALLLIQKMPFQPTRAIWGSLLGACRVH 420

Query: 430 GDARNALIFFNKMKDESIDP 449
            +         K+ D  I+P
Sbjct: 421 ANVHVGEFVAQKLFD--IEP 438



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 89/178 (50%), Gaps = 8/178 (4%)

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           + I+ C     L + +++H  +    +   L +   ++ MYA+CG+LE A  V + M  R
Sbjct: 40  AAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPER 99

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           NV+SWT+MI+ ++ +     A   F  M     +PN  T   VL +C+ +  + + +   
Sbjct: 100 NVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQ--- 156

Query: 475 ASMTNEYNIPPKYEHY----GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
               + + I   +E +      ++D++ R+  ++EA  + + +P A +VV + ++++ 
Sbjct: 157 IKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLP-ARDVVSYTTILSG 213


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/712 (34%), Positives = 390/712 (54%), Gaps = 59/712 (8%)

Query: 16  STAISSCS---SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALS 72
           ++ I+ C+   SLT +K  H  ILK      S  S     L+  +       S +  A  
Sbjct: 5   TSLIAQCTNKKSLTTLKSLHTHILKSG----SLFSFFGHKLIDGY----IKCSVITEARK 56

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F ++P       N  I +     + K A++++  ML EG+  D ++F  I KA +    
Sbjct: 57  LFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGV 116

Query: 133 LLEGMQVHGLGTKLGFG-SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
             EG + HGL   LGF  SD FV TG+V MY   GK+ DAR +FD++  +D+V ++ +I 
Sbjct: 117 SREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIV 176

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           GY Q+GL  E L +FE+M  S ++P+E  L+ +L +C   G+L  G+ +H  ++   +  
Sbjct: 177 GYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLES 236

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
               Q++L+TMY                               S+   VED+  +F+ + 
Sbjct: 237 VVASQTSLLTMY-------------------------------SKCNMVEDSIKVFNSLA 265

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
               + W++ I G  +N   + AL +F EM  C + P+  T+ S++ AC+ L +L+  ++
Sbjct: 266 YASHVTWTSFIVGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAMLEAGEQ 325

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           IH    K    G+  V+ A+I +Y KCG++E AR VF+ +   +++S  +MI A+A +G 
Sbjct: 326 IHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQNGF 385

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
              AL  F ++K   ++PN VTFI +L AC++AGLV+EG +IF+ + N ++I    +HY 
Sbjct: 386 GHEALELFERLKKLGLEPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYT 445

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           CM+DL GRA    EA  L+E     P+V+ W +L+ AC++HGE+E+AE   K++L   P 
Sbjct: 446 CMIDLLGRAKRFEEATMLIEEGK-NPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPR 504

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
             G  +LL+NIYA   +W +V E++ + ++  + K  A S ++++ EV+ F+  D SH +
Sbjct: 505 DGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPR 564

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS-KKD 670
             +I E L+E+I ++   GY PD    L DLE+E+K   + +HSEKLA+ + L  +  K+
Sbjct: 565 AHEISEMLHELIEKVITLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIAFALWKTCGKN 624

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + IRI KNLRVC D               I+ RD  RFHH+K G+CSCKDYW
Sbjct: 625 TAIRIFKNLRVCGD--------------YIIARDAKRFHHFKGGICSCKDYW 662


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/719 (32%), Positives = 391/719 (54%), Gaps = 42/719 (5%)

Query: 8   TKPLTLPTSTAISSCSSL---THMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP 64
           T+P  +   T +S C+       + Q   QI+KL +       ++   L+ S+       
Sbjct: 145 TEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYD---SRLIVGNTLVDSY----CKS 197

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
           + L  A  +F ++P   S   N  I   S     + A+ +F++M N GL    F+F  +L
Sbjct: 198 NRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL 257

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            A    + ++ G Q+H    K  F  + FV   L+  Y     ++DAR +FD+M  +D V
Sbjct: 258 CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGV 317

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            ++V+I GY  +G      +LF E++ +  +  +   + +LS  S   +   G  +H   
Sbjct: 318 SYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQT 377

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           I      +  + ++L+ MYA C                               G+ E+A 
Sbjct: 378 IVTTADSEILVGNSLVDMYAKC-------------------------------GKFEEAE 406

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
           +IF  +  +  + W+AMIS Y +    +E L+LFN+M+   +  D+ T  S++ A A + 
Sbjct: 407 MIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIA 466

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L   +++H +I K+ F  ++   +A++D+YAKCGS++ A + F+ M  RN++SW +MI+
Sbjct: 467 SLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMIS 526

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
           A+A +G+A   L  F +M    + P+ V+F+GVL ACSH+GLV+EG   F SMT  Y + 
Sbjct: 527 AYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLD 586

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P+ EHY  +VD+  R+    EA +L+  MP  P+ ++W S++ ACR+H   ELA  AA Q
Sbjct: 587 PRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQ 646

Query: 545 LLQLDPDHDGA-LVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
           L  ++   D A  V +SNIYA   +W++V ++ K+M++RG+ K  A S +E+ +E + F 
Sbjct: 647 LFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFS 706

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYG 663
             DR H Q ++I +K++ +   ++  GY PD   AL + +++ K E + +HSE+LA+ + 
Sbjct: 707 ANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFA 766

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LIS+ + S I ++KNLR C DCH  IK++SK+  REI +RD TRFHH++DG CSC D+W
Sbjct: 767 LISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 226/481 (46%), Gaps = 44/481 (9%)

Query: 91  AISWS---------HRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG 141
           A++W+         ++ K A ++F++M   G   D  +F  +L      E   +  QV  
Sbjct: 114 AVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQT 173

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201
              KLG+ S   V   LV  Y    ++  A  +F +M   D V ++ MI GY ++GL ++
Sbjct: 174 QIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEK 233

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
            +NLF EM+ S ++P E   + +L A     ++  G+ +H F+I  N             
Sbjct: 234 AVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTN------------- 280

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
                              + N+ VS A++  YS+   V DAR +FD+M E+D + ++ +
Sbjct: 281 ------------------FVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVI 322

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF 381
           ISGYA +   + A  LF E+Q       +    +++S  ++    +  ++IH        
Sbjct: 323 ISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTA 382

Query: 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNK 441
             ++ V N+++DMYAKCG  E A  +F  +  R+ + WT+MI+A+   G     L  FNK
Sbjct: 383 DSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNK 442

Query: 442 MKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501
           M+  S+  +  TF  +L A +    +  G+++ + +     +   +     ++D++ +  
Sbjct: 443 MRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSG-SALLDVYAKCG 501

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALVLL 559
            +++A++  + MP   N+V W ++++A   +GE E  L  F    L  L PD    L +L
Sbjct: 502 SIKDAVQTFQEMP-DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVL 560

Query: 560 S 560
           S
Sbjct: 561 S 561



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 186/373 (49%), Gaps = 37/373 (9%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           ++  Y   G + +AR +FD M  R  V W+++I GY Q   F E   LF +M+    EPD
Sbjct: 89  MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPD 148

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
            +    +LS C+           HE  + N +     +Q+ +I +  +            
Sbjct: 149 YVTFVTLLSGCNG----------HE--MGNQI---TQVQTQIIKLGYD------------ 181

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                 L+V   +V  Y ++ +++ A  +F +M E D + ++AMI+GY+++   ++A+ L
Sbjct: 182 ----SRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNL 237

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLD--QAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           F EMQ  G+KP + T  +V+  CA++G+ D    Q+IH ++ K  F  ++ V+NA++D Y
Sbjct: 238 FVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFY 295

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           +K  S+  AR++F+ M  ++ +S+  +I+ +A  G  + A   F +++  + D     F 
Sbjct: 296 SKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFA 355

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
            +L   S+    + GR+I A  T       +      +VD++ +     EA E++ T   
Sbjct: 356 TMLSIASNTLDWEMGRQIHAQ-TIVTTADSEILVGNSLVDMYAKCGKFEEA-EMIFTNLT 413

Query: 516 APNVVIWGSLMAA 528
             + V W ++++A
Sbjct: 414 HRSAVPWTAMISA 426



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 153/290 (52%), Gaps = 14/290 (4%)

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
           G +  A+ LF+K+  KN V +  M+SGY ++G + +AR +FD MVE+  + W+ +I GY+
Sbjct: 66  GELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYS 125

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
           + N  +EA +LF +MQ CG +PD VT ++++S C    + +Q  ++   I K  +   L 
Sbjct: 126 QLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLI 185

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
           V N ++D Y K   L+ A ++F+ M   + +S+ +MI  ++  G    A+  F +M++  
Sbjct: 186 VGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSG 245

Query: 447 IDPNGVTFIGVLYACSHAGLVD--EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
           + P   TF  VL  C++ GL D   G++I  S   + N          ++D + + + + 
Sbjct: 246 LKPTEFTFAAVL--CANIGLDDIVLGQQIH-SFVIKTNFVWNVFVSNALLDFYSKHDSVI 302

Query: 505 EALELVETMP----FAPNVVI----W-GSLMAACRVHGEIELAEFAAKQL 545
           +A +L + MP     + NV+I    W G    A  +  E++   F  KQ 
Sbjct: 303 DARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQF 352



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
           MK +  T L   S  +    L+    I   I K  F  D   +N  +  + K G L  AR
Sbjct: 13  MKKNVSTFLKSSSLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQAR 72

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
           ++FE+M  +N +S   MI+ +   G+   A   F+ M    ++   VT+  ++   S   
Sbjct: 73  QLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGM----VERTAVTWTILIGGYSQLN 128

Query: 466 LVDEGREIFASM 477
              E  E+F  M
Sbjct: 129 QFKEAFELFVQM 140


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/510 (41%), Positives = 302/510 (59%), Gaps = 34/510 (6%)

Query: 216  PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
            PD      ++ AC+R   L  GE +H     N       +Q++L+ +Y  CG        
Sbjct: 802  PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLF------ 855

Query: 276  FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV--EKDLICWSAMISGYAENNHPQE 333
                                     E A  +FD+M    ++L+ W++M++ +A N  P E
Sbjct: 856  -------------------------ESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNE 890

Query: 334  ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
             L +F EM      PD  T++SV++ACA  G L   +R+H+Y++K     +  V+NA+ID
Sbjct: 891  VLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALID 950

Query: 394  MYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
            +YAKCGS+  AR +FE M   R V+SWTS+I   A +G  + AL  F+ M+ E + P  +
Sbjct: 951  LYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEI 1010

Query: 453  TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
            T +GVLYACSH GLVD+G   F  M  +Y I P+ EH GCMVDL GRA  + EA + + T
Sbjct: 1011 TMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIIT 1070

Query: 513  MPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572
            MP  PN V+W +L+ +C +H ++EL + A ++L++LDP H G  VLLSN+YA    W DV
Sbjct: 1071 MPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADV 1130

Query: 573  GELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYV 632
              LRK+M +  + K    S +E+ N VYEF+  DRSH +++QIYE L E+   L+  GY+
Sbjct: 1131 HVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYI 1190

Query: 633  PDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLV 692
            P   + L D+E+EEK   + +HSE+LA+ + L+ S     IRI+KNLR+C DCH    L+
Sbjct: 1191 PRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLI 1250

Query: 693  SKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            SKVY REI++RDR+RFHH++ G CSCKDYW
Sbjct: 1251 SKVYDREIIVRDRSRFHHFQGGACSCKDYW 1280



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 201/397 (50%), Gaps = 50/397 (12%)

Query: 44   SQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI----PAPPSRVSNKFIRAISWSHRPK 99
            + + LL K LL  F L       L YA+++ S++    P  P  + N  +R  + S RP+
Sbjct: 733  TSHPLLAKHLL--FHLAALRAPPLRYAVAVLSRLLPHGPLDPFPL-NTVLRIAAGSPRPR 789

Query: 100  HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
             AL++  + L      D  ++PP+++A AR   L EG  +H    K GF +  FVQ  LV
Sbjct: 790  VALELHRRRLA---LPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLV 846

Query: 160  GMYGACGKILDARLMFDKMSYR--DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
             +YGACG    A  +FD+M  R  ++V W+ M++ +  NG  +EVL +F EM   +  PD
Sbjct: 847  HLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPD 906

Query: 218  EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
               +  +L+AC+  G L+ G  VH ++    +  ++H+ + LI +YA CG ++ A+ +F+
Sbjct: 907  GFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFE 966

Query: 278  KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
            ++ L   VVS                              W+++I G A N   +EAL+L
Sbjct: 967  EMGLGRTVVS------------------------------WTSLIVGLAANGFGKEALEL 996

Query: 338  FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID--KNAFGGDLRVNN--AIID 393
            F+ M+   + P ++TM+ V+ AC+H G++D   R   Y D  K  +G   R+ +   ++D
Sbjct: 997  FSLMEREKLVPTEITMVGVLYACSHCGLVDDGFR---YFDRMKEDYGISPRIEHLGCMVD 1053

Query: 394  MYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
            +  + G +E A +    M    N + W +++ + A+H
Sbjct: 1054 LLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMH 1090



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 6/210 (2%)

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385
           A +  P+ AL+L          PD  T   +I ACA L  L + + +H    KN F   +
Sbjct: 783 AGSPRPRVALELHRRRLAL---PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLV 839

Query: 386 RVNNAIIDMYAKCGSLESAREVFERM--RRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
            V N+++ +Y  CG  ESA +VF+ M  R RN++SW SM+N+FA +G     L  F +M 
Sbjct: 840 FVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEML 899

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
                P+G T + VL AC+  G +  GR +   +  +  +         ++DL+ +   +
Sbjct: 900 GVDFAPDGFTIVSVLTACAEFGALALGRRVHVYV-EKVGLVENSHVSNALIDLYAKCGSV 958

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHG 533
            +A  + E M     VV W SL+     +G
Sbjct: 959 NDARRIFEEMGLGRTVVSWTSLIVGLAANG 988


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/624 (37%), Positives = 355/624 (56%), Gaps = 49/624 (7%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLL-LTSFSLPTTTPSSLYYALSIF 74
           ++ +  C S+  +KQ HAQ+L  ++S H  NS L K+  L  F+          YA   F
Sbjct: 36  NSLLQQCLSIKQLKQIHAQLL--TNSIHKPNSFLYKIADLKDFA----------YASVFF 83

Query: 75  SQIPAPPSRVSNKFIRAIS--WSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           S I  P     N  IR +S  W ++   AL+ + +M   GL  +  ++P +  A +    
Sbjct: 84  SNILDPTEYSFNVMIRGLSTAW-NKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLA 142

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           +  G   H    + G   D  V   L+ MY  CGK+ DAR +FD++S +D+V W+ MI G
Sbjct: 143 VENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISG 202

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y +     E + LF EM  +  +P+EM L  +L AC   G+L  G  V EF+++N + L+
Sbjct: 203 YSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLN 262

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             + S LI MY  C                               G +  AR IFD M +
Sbjct: 263 YFMGSALIHMYGKC-------------------------------GDLVSARRIFDSMKK 291

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           KD + W+AMI+GYA+N   +EA+KLF +M++    PD++T++ ++SACA +G LD  +++
Sbjct: 292 KDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQV 351

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
            +Y  +  F  D+ V  A++DMYAKCGSL++A  VF  M ++N +SW +MI+A A HG A
Sbjct: 352 EIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQA 411

Query: 433 RNALIFFNKMKDE--SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
           + AL  F  M +E  ++ PN +TF+GVL AC HAGLVDEGR +F  M++ + + PK EHY
Sbjct: 412 QEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHY 471

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
            CMVDLF RA  L EA + V TMP  P+ VI G+L+ AC+    I+++E   K LL+L+P
Sbjct: 472 SCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEP 531

Query: 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK 610
            + G  V+ S +YA  +RW D   +R  MK++G+ K   CS I++N++++EF   D  H+
Sbjct: 532 SNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGDVLHQ 591

Query: 611 QTDQIYEKLNEVISELKPAGYVPD 634
           +  +I++ L+ +I +L+  GY+P+
Sbjct: 592 EWIEIHQILDLLIDDLRREGYIPN 615


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/656 (35%), Positives = 353/656 (53%), Gaps = 54/656 (8%)

Query: 89  IRAISWSHRPKHALKVFLKMLNEGLTIDRF--SFPPILKAIARAEGLLE-GMQVHGLGTK 145
           IRA +       A+ +FL+M            S P  LK+ A A GL   G  +H L  +
Sbjct: 20  IRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCA-ALGLSALGASLHALAIR 78

Query: 146 LGFGSDPFVQTGLVGMY-------------------GACGKILDARLMFDKMSYRDIVPW 186
            G  +D F    L+ +Y                   G+       R +FD+M  RD+V W
Sbjct: 79  SGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSW 138

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + ++ G  + G   E L    +M      PD   LS +L   +   ++  G  VH F   
Sbjct: 139 NTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFR 198

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
           N    D  + S+LI MYANC   D +  +FD     NL V                    
Sbjct: 199 NGFDSDVFVGSSLIDMYANCTRTDYSVKVFD-----NLPV-------------------- 233

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
                 +D I W+++++G A+N   +EAL +F  M   G++P  VT  S+I  C +L  L
Sbjct: 234 ------RDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASL 287

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
              +++H Y+    F  ++ +++++IDMY KCG +  A  +F++M   +V+SWT+MI  +
Sbjct: 288 RFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGY 347

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           A+HG AR AL+ F +M+  +  PN +TF+ VL ACSHAGLVD+G + F SM+N Y I P 
Sbjct: 348 ALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPT 407

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            EH+  + D  GRA  L EA   +  M   P   +W +L+ ACRVH    LAE  AK+++
Sbjct: 408 LEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIM 467

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           +L+P   G+ V+LSN+Y+   RW +   LR+SM+++G+ K+ ACS IE+ ++++ F+  D
Sbjct: 468 ELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHD 527

Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS 666
           RSH   D+I + LN    ++   G+VP+      D+E+E K  V+  HSEKLA+ +G+IS
Sbjct: 528 RSHPWYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIIS 587

Query: 667 SKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +   + IR++KNLRVC DCH   K +SK+  REIV+RD  RFHH+KDG CSC D+W
Sbjct: 588 TPAGTKIRVMKNLRVCIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 158/350 (45%), Gaps = 20/350 (5%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           Y++ +F  +P     + N  +   + +   + AL +F +ML  G+     +F  ++    
Sbjct: 223 YSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCG 282

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
               L  G Q+H      GF  + F+ + L+ MY  CG+I  A  +FDKMS  D+V W+ 
Sbjct: 283 NLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTA 342

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI GY  +G   E L LFE M++ N +P+ +    +L+ACS AG +  G    +  + N+
Sbjct: 343 MIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFK-SMSNH 401

Query: 249 VALDAHLQ--STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
             +   L+  + L       G +D A     K+ +K    + ++ S   RA +V    ++
Sbjct: 402 YGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKP---TASVWSTLLRACRVHKNTML 458

Query: 307 FDQMVEKDL------ICWSAMISG-YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
            +++ +K +      I    ++S  Y+ +    EA  L   M+  GMK D     S I  
Sbjct: 459 AEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPAC--SWIEV 516

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
            + L V     R H + D+      +   NA  +  A+ G + +  +VF+
Sbjct: 517 KSKLHVFVAHDRSHPWYDR-----IIDALNAFSEQMAREGHVPNTEDVFQ 561


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 252/717 (35%), Positives = 383/717 (53%), Gaps = 105/717 (14%)

Query: 67  LYYALSIFSQIPAPPSRVS--NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
           ++ A  +F   P P   ++  N  + A   SH+P+ AL +F +M       +  SF    
Sbjct: 35  IHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQR----NTVSF---- 86

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
                  G++ G                +V+ G+V          DAR +FD M  R++V
Sbjct: 87  ------NGMISG----------------YVKNGMVA---------DARKVFDVMPERNVV 115

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNV---------------------------EPD 217
            W+ M+ GY Q G+ +E   LF EM   NV                           E D
Sbjct: 116 SWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKD 175

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
            +V++ ++    + G L     + + +   NV       +T+++ YA  G +D+A+ LF+
Sbjct: 176 VVVVTNMIGGYCQVGRLDEARELFDEMKVRNV----FTWTTMVSGYAKNGRVDVARKLFE 231

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDA-------------------------------RLI 306
            +  +N V  TAM+ GY+++G++++A                               R++
Sbjct: 232 VMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMM 291

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F+ M E+D   W+AMI  +       EAL LF  MQ  G+  +  +M+SV+S CA L  L
Sbjct: 292 FEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASL 351

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           D  +++H  + ++ F  DL V + +I MY KCG L  A+ +F R   ++V+ W SMI  +
Sbjct: 352 DHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGY 411

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           + HG    AL  F+ M    + P+ VTFIGVL ACS++G V EG EIF +M   Y + P 
Sbjct: 412 SQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPG 471

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            EHY CMVDL GRA  + EA+ELVE MP  P+ ++WG+L+ ACR H +++LAE A ++L 
Sbjct: 472 IEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLA 531

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           +L+P + G  VLLS++YA   RW+DV  LRK +  R ++K   CS IE+  +V+ F   D
Sbjct: 532 KLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRR-VIKFPGCSWIEVEKKVHMFTGGD 590

Query: 607 -RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
            +SH +   I + L ++   L+ AGY PD    L D+++EEK   + +HSE+LA+ YGL+
Sbjct: 591 SKSHPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLL 650

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              +   IR++KNLRVC DCH+ IKL++KV  REI++RD  RFHH+KDG CSCKD+W
Sbjct: 651 KVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 186/407 (45%), Gaps = 43/407 (10%)

Query: 156 TGLVGMYGACGKILDARLMFDK--MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN 213
           T  +  YG  G I +AR +FD   +  R I  W+ M+  YF++    + L LF++M   N
Sbjct: 23  TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQRN 82

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
                +  + ++S   + G ++    V + + + NV       ++++  Y   G ++ A+
Sbjct: 83  T----VSFNGMISGYVKNGMVADARKVFDVMPERNVVS----WTSMVRGYVQEGMVEEAE 134

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
            LF ++  +N+V  T M+ G  +  +++DA+ +FD + EKD++  + MI GY +     E
Sbjct: 135 KLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDE 194

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI-HLYIDKNAF----------- 381
           A +LF+EM+V     +  T  +++S  A  G +D A+++  +  ++N             
Sbjct: 195 ARELFDEMKV----RNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQ 250

Query: 382 GGDLR---------------VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
            G ++                 N +I  +   G +  AR +FE M+ R+  +W +MI  F
Sbjct: 251 SGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVF 310

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
              G    AL  F +M+ E +  N  + I VL  C+    +D GR++ A +         
Sbjct: 311 ERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDL 370

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           Y     ++ ++ +   L  A  +     F  +VV+W S++     HG
Sbjct: 371 YVA-SVLITMYVKCGDLVRAKGIFNRFLF-KDVVMWNSMITGYSQHG 415



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 128/265 (48%), Gaps = 26/265 (9%)

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ--MVEKDLICWSAMISGYAENNHPQEALK 336
           V  ++L  +T+ +S Y R G + +AR +FD   + ++ +  W+AM+S Y E++ P++AL 
Sbjct: 14  VQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALL 73

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH-LYIDKNAFGGDLRVNNAIIDMY 395
           LF++M     + + V+   +IS     G++  A+++  +  ++N          +++  Y
Sbjct: 74  LFDQMP----QRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSW-----TSMVRGY 124

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
            + G +E A ++F  M RRNV+SWT MI          +A   F+ + ++ +    V   
Sbjct: 125 VQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDV----VVVT 180

Query: 456 GVLYACSHAGLVDEGREIFASMT--NEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
            ++      G +DE RE+F  M   N +        +  MV  + +   +  A +L E M
Sbjct: 181 NMIGGYCQVGRLDEARELFDEMKVRNVFT-------WTTMVSGYAKNGRVDVARKLFEVM 233

Query: 514 PFAPNVVIWGSLMAACRVHGEIELA 538
           P   N V W +++      G ++ A
Sbjct: 234 P-ERNEVSWTAMLMGYTQSGRMKEA 257



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 92/233 (39%), Gaps = 40/233 (17%)

Query: 10  PLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYY 69
           P  +   +  +S +SL H +Q HA++++   S   Q+  +  +L+T +         L  
Sbjct: 336 PSMISVLSVCASLASLDHGRQVHARLVR---SEFDQDLYVASVLITMY----VKCGDLVR 388

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  IF++       + N  I   S     + AL VF  M + G+  D  +F  +L A + 
Sbjct: 389 AKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSY 448

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
           +  + EG ++     K  +  +P ++      + AC                       M
Sbjct: 449 SGKVKEGFEIFE-AMKCTYQVEPGIE------HYAC-----------------------M 478

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +D   + G  DE + L E+M M   EPD +V   +L AC     L   E   E
Sbjct: 479 VDLLGRAGRVDEAMELVEKMPM---EPDAIVWGALLGACRNHMKLDLAEVAVE 528


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/681 (34%), Positives = 354/681 (51%), Gaps = 64/681 (9%)

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPILKAIARAEG 132
           F ++P       N  I   S S     A+K +  M+ +    + R +   +LK  +    
Sbjct: 92  FEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGH 151

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYG----------------------------- 163
           +  G Q+HG   KLGF S   V + L+ MY                              
Sbjct: 152 VSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGG 211

Query: 164 --ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221
             ACG I DA  +F  M  +D V WS MI G  QNG+  E +  F EMK+  ++ D+   
Sbjct: 212 LLACGMIEDALQLFRGME-KDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPF 270

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
             +L AC   G ++ G  +H  II  N+    ++ S LI MY  C C+  AK        
Sbjct: 271 GSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAK-------- 322

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
                                   +FD+M +K+++ W+AM+ GY +     EA+K+F +M
Sbjct: 323 -----------------------TVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDM 359

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
           Q  G+ PD  T+   ISACA++  L++  + H           + V+N+++ +Y KCG +
Sbjct: 360 QRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDI 419

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
           + +  +F  M  R+ +SWT+M++A+A  G A  A+  F+KM    + P+GVT  GV+ AC
Sbjct: 420 DDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISAC 479

Query: 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI 521
           S AGLV++G+  F  M NEY I P   HY CM+DLF R+  + EA+  +  MPF P+ + 
Sbjct: 480 SRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIG 539

Query: 522 WGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581
           W +L++ACR  G +E+ ++AA+ L++LDP H     LLS+IYA   +W  V +LR+ MKE
Sbjct: 540 WTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKE 599

Query: 582 RGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVD 641
           + + KE   S I+   +++ F   D S   +DQIY KL E+  ++   GY PD      D
Sbjct: 600 KNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHD 659

Query: 642 LEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIV 701
           +E+  K +++  HSE+LA+ +GLI       IR+ KNLRVC DCHN  K +S V  REI+
Sbjct: 660 VEEAVKIKMLNCHSERLAIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHISSVTGREIL 719

Query: 702 IRDRTRFHHYKDGVCSCKDYW 722
           +RD  RFH +KDG CSC D+W
Sbjct: 720 VRDAVRFHRFKDGTCSCGDFW 740



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/409 (30%), Positives = 206/409 (50%), Gaps = 16/409 (3%)

Query: 153 FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE-MKM 211
           F    L+  Y   G + +    F+K+  RD V W+V+I+GY  +GL    +  +   MK 
Sbjct: 70  FSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKD 129

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL--QSTLITMYANCGCM 269
            +     + L  +L   S  G++S G+ +H  +I   +  +++L   S L+ MY+  GC+
Sbjct: 130 FSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVI--KLGFESYLLVGSPLLDMYSKVGCI 187

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
             AK +F  +  +N V+   ++ G    G +EDA  +F  M EKD + WSAMI G A+N 
Sbjct: 188 SDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSWSAMIKGLAQNG 246

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389
             +EA++ F EM++ G+K D+    SV+ AC  LG ++  ++IH  I +      + V +
Sbjct: 247 MEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGS 306

Query: 390 AIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449
           A+IDMY KC  L  A+ VF+RM+++NV+SWT+M+  +   G A  A+  F  M+   IDP
Sbjct: 307 ALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDP 366

Query: 450 NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY----GCMVDLFGRANLLRE 505
           +  T    + AC++   ++EG +          I     HY      +V L+G+   + +
Sbjct: 367 DHYTLGQAISACANISSLEEGSQFHGKA-----ITAGLIHYITVSNSLVTLYGKCGDIDD 421

Query: 506 ALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           +  L   M     V  W ++++A    G    A     +++QL    DG
Sbjct: 422 STRLFNEMNVRDEVS-WTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDG 469



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 162/367 (44%), Gaps = 41/367 (11%)

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           S  +  C   G   + + +H  II      +  L + ++  YA       A+ +FD +  
Sbjct: 7   SAQIKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQ 66

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE- 340
            NL     ++  YS++G + +    F+++ ++D + W+ +I GY+ +     A+K +N  
Sbjct: 67  PNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM 126

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M+       +VT+++++   +  G +   ++IH  + K  F   L V + ++DMY+K G 
Sbjct: 127 MKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGC 186

Query: 401 LESAREVFERMRRRNV------------------------------ISWTSMINAFAIHG 430
           +  A++VF  +  RN                               +SW++MI   A +G
Sbjct: 187 ISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNG 246

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
             + A+  F +MK E +  +   F  VL AC   G +++GR+I A +    N+       
Sbjct: 247 MEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRT-NLQDHIYVG 305

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL-- 548
             ++D++ +   L  A  + + M    NVV W +++     +G+   A  A K  L +  
Sbjct: 306 SALIDMYCKCKCLHYAKTVFDRMK-QKNVVSWTAMVVG---YGQTGRAGEAVKIFLDMQR 361

Query: 549 ---DPDH 552
              DPDH
Sbjct: 362 SGIDPDH 368


>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
          Length = 686

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/596 (37%), Positives = 349/596 (58%), Gaps = 24/596 (4%)

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L     +H    KLG      +   LV +YG CG    A  +FD+M +RD + W+ ++  
Sbjct: 87  LTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTA 146

Query: 193 YFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
             Q  L  + L++F  +  S+ + PD+ V S ++ AC+  G++ +G  VH   I +  A 
Sbjct: 147 LNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYAN 206

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           D  ++S+L+ MYA CG ++ AK +FD + +KN +  TAMVSGY+++G+ E+A  +F  + 
Sbjct: 207 DEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILP 266

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP-DKVTMLSVISACAHLGVLDQAQ 370
            K+L  W+A+ISG+ ++    EA  +F EM+   +   D + + S++ ACA+L      +
Sbjct: 267 VKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGR 326

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
           ++H               NA+IDMYAKC  + +A+++F RMR R+V+SWTS+I   A HG
Sbjct: 327 QVH--------------GNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHG 372

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
            A  AL  ++ M    + PN VTF+G++YACSH G V++GRE+F SMT +Y I P  +HY
Sbjct: 373 QAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHY 432

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE----IELAEFAAKQLL 546
            C++DL GR+ LL EA  L+ TMPF P+   W +L++AC+  G     I +A+       
Sbjct: 433 TCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFK 492

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
             DP      +LLSNIYA    W  V E R+ + E  + K+   S +E+  E   F   +
Sbjct: 493 LKDPS---TYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGE 549

Query: 607 RSHKQTDQIYEKLNEVISELK-PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
            SH   + I+  L ++  E++   GYVPD    L D++++EK +++ WHSE+ A+ YGL+
Sbjct: 550 TSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLL 609

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
            +   + IRIVKNLRVC DCH  +K +S++  REI++RD TR+HH+K G CSC D+
Sbjct: 610 KAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 665


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/624 (37%), Positives = 360/624 (57%), Gaps = 37/624 (5%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL++F    +    + + ++  ++K  A  + L    Q+H    K GF S   V T L+ 
Sbjct: 290 ALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMD 349

Query: 161 MYGACGKILDARLMFDKMS-YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
            Y   G++ +A  +F  MS  +++V W+ MI+G  QNG       LF  M+   V P++ 
Sbjct: 350 AYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDF 409

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
             S IL+A       S    +H  +I  N    +                          
Sbjct: 410 TYSTILTA----SVASLPPQIHAQVIKTNYECTS-------------------------- 439

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
                +V TA+++ YS+    E+A  IF  + +KD++ WSAM++ YA+      A  +F 
Sbjct: 440 -----IVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFI 494

Query: 340 EMQVCGMKPDKVTMLSVISACAH-LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           +M + G+KP++ T+ SVI ACA     +D  ++ H    K+     L V++A++ MYA+ 
Sbjct: 495 KMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARK 554

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           GS+ESA+ +FER   R+++SW SM++ +A HG ++ AL  F +M+ E I+ +GVTF+ V+
Sbjct: 555 GSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVI 614

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
             C+HAGLV+EG+  F SM  +Y I P  EHY CMVDL+ RA  L EA+ L+E M F   
Sbjct: 615 MGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAG 674

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
            ++W +L+ AC+VH  +EL + AA++LL L+P      VLLSNIY+   +W++  E+RK 
Sbjct: 675 PMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKL 734

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           M  + + KE  CS I++ N+V+ F+ +D+SH  ++QIY KL  + ++LK  GY PD   A
Sbjct: 735 MDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFA 794

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           L ++ +E+K  ++  HSE+LAL +GLI++   + + I KNLRVC DCH  IK+VSK+  R
Sbjct: 795 LHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDR 854

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EIV+RD +RFHH+  GVCSC D+W
Sbjct: 855 EIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 166/340 (48%), Gaps = 33/340 (9%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFG-SDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
           +LK        + G Q+HGL  + G    D  V T LV MY     ++D R +F+ M  R
Sbjct: 109 VLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKR 168

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           ++V W+ ++ GY Q+G   +V+ LF  M+   V P+ +  + +LS  +  G +  G  VH
Sbjct: 169 NVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVH 228

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
              +         + ++L+ MYA CG                                VE
Sbjct: 229 AQSVKFGCCSTVFVCNSLMNMYAKCGL-------------------------------VE 257

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
           +AR++F  M  +D++ W+ +++G   N H  EAL+LF++ +       + T  +VI  CA
Sbjct: 258 EARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCA 317

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWT 420
           ++  L  A+++H  + K  F     V  A++D Y+K G L +A ++F  M   +NV+SWT
Sbjct: 318 NIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWT 377

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +MIN    +GD   A   F++M+++ + PN  T+  +L A
Sbjct: 378 AMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA 417



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 138/257 (53%), Gaps = 9/257 (3%)

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
           V T++V  Y +   V D R +F+ M +++++ W+++++GY ++    + ++LF  M+  G
Sbjct: 141 VGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEG 200

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
           + P+ VT  SV+S  A  G++D  +R+H    K      + V N++++MYAKCG +E AR
Sbjct: 201 VWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEAR 260

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
            VF  M  R+++SW +++    ++G    AL  F+  +         T+  V+  C++  
Sbjct: 261 VVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIK 320

Query: 466 LVDEGREIFASMTNEYNIPPKYEHYG----CMVDLFGRANLLREALELVETMPFAPNVVI 521
            +   R++ +S+     +   +  YG     ++D + +A  L  AL++   M  + NVV 
Sbjct: 321 QLGLARQLHSSV-----LKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVS 375

Query: 522 WGSLMAACRVHGEIELA 538
           W +++  C  +G++ LA
Sbjct: 376 WTAMINGCIQNGDVPLA 392



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 122/265 (46%), Gaps = 9/265 (3%)

Query: 15  TSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIF 74
           T + I + S  +   Q HAQ++K   +++   S++   LL S+S    T      ALSIF
Sbjct: 410 TYSTILTASVASLPPQIHAQVIK---TNYECTSIVGTALLASYSKLCNTEE----ALSIF 462

Query: 75  SQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR-AEGL 133
             I        +  +   + +     A  +F+KM   GL  + F+   ++ A A    G+
Sbjct: 463 KMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGV 522

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
             G Q H +  K        V + LV MY   G I  A+ +F++ + RD+V W+ M+ GY
Sbjct: 523 DLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGY 582

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII-DNNVALD 252
            Q+G   + L++F +M+   +E D +    ++  C+ AG +  G+   + +  D  +   
Sbjct: 583 AQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPT 642

Query: 253 AHLQSTLITMYANCGCMDMAKGLFD 277
               + ++ +Y+  G +D A  L +
Sbjct: 643 MEHYACMVDLYSRAGKLDEAMSLIE 667



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 115/242 (47%), Gaps = 24/242 (9%)

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC-GMKPDKVTMLSVISACA 361
           AR  FD++  ++ +     +  +A      +AL  F ++  C G +     ++ V+  C 
Sbjct: 57  ARQAFDEIPHRNTL--DHALFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCG 114

Query: 362 HLGVLDQAQRIH-LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
            +      +++H L I      GD+ V  +++DMY K  S+   R+VFE M +RNV++WT
Sbjct: 115 SVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWT 174

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           S++  +   G   + +  F +M+ E + PN VTF  VL   +  G+VD GR + A     
Sbjct: 175 SLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVK- 233

Query: 481 YNIPPKYEHYGC---------MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
                    +GC         +++++ +  L+ EA  +   M    ++V W +LMA   +
Sbjct: 234 ---------FGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGME-TRDMVSWNTLMAGLVL 283

Query: 532 HG 533
           +G
Sbjct: 284 NG 285



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 90/243 (37%), Gaps = 48/243 (19%)

Query: 9   KPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY 68
           KP     S+ I +C+S T       Q   +S  H   ++L +   L S         S+ 
Sbjct: 502 KPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSM---YARKGSIE 558

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
            A  IF +         N  +   +     + AL VF +M  EG+ +D  +F  ++   A
Sbjct: 559 SAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCA 618

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD--IVP- 185
            A GL+E                                  + +  FD M+ RD  I P 
Sbjct: 619 HA-GLVE----------------------------------EGQRYFDSMA-RDYGITPT 642

Query: 186 ---WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
              ++ M+D Y + G  DE ++L E M   +     MV   +L AC    N+  G+   E
Sbjct: 643 MEHYACMVDLYSRAGKLDEAMSLIEGM---SFPAGPMVWRTLLGACKVHKNVELGKLAAE 699

Query: 243 FII 245
            ++
Sbjct: 700 KLL 702


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/528 (39%), Positives = 324/528 (61%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L +A  +F QI AP + + N  IR ++ S  P  A+  + K    G+  D  +FP ILKA
Sbjct: 37  LVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKA 96

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            AR   L EG Q+H   TKLG  SD FV   L+ +Y ACG +  AR +FD+M  +D+V W
Sbjct: 97  CARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSW 156

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +I GY Q   F ++L LF+ M+   V+ D++ + K++SAC+R G+ S  + +  +I D
Sbjct: 157 NSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIED 216

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
             + +D +L +TL+  +   G +  A+ +F  + ++N+V   AM++ Y++   +  AR I
Sbjct: 217 YCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKI 276

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           FDQ+ +KDLI WS+MISGY++ NH  +AL++F +MQ   +KPD + + SV+S+CAHLG L
Sbjct: 277 FDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGAL 336

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           D  + +H Y+ +N    D  + N++IDMY KCGS + A +VF+ M+ ++ +SW S+I   
Sbjct: 337 DLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGL 396

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           A +G  + +L  F  M  E   PNGVTF+GVL AC++A LV+EG + F SM   Y++ P+
Sbjct: 397 ANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQ 456

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            +HYGC+VDL GRA  L +AL  +  MP  P+ V+W  L+ +C  HG++ +AE   K+L 
Sbjct: 457 MKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLN 516

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
           +L+P + G   LLSN YA   RW +   +R+ M +  + K   CS +E
Sbjct: 517 ELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 564



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 218/491 (44%), Gaps = 79/491 (16%)

Query: 11  LTLP-TSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP--TTTPSSL 67
           LT P    A +  ++L   +Q H  I KL          LL  +  S SL        +L
Sbjct: 88  LTFPFILKACARINALNEGEQMHNHITKLG---------LLSDIFVSNSLIHLYAACGNL 138

Query: 68  YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
            YA S+F ++        N  I   S  +R K  L +F  M NEG+  D+ +   ++ A 
Sbjct: 139 CYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSAC 198

Query: 128 AR------AEGLLEGMQVHGLGTKLGFGS---DPFVQTG--------------------- 157
            R      A+ ++  ++ + +   +  G+   D F + G                     
Sbjct: 199 TRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMN 258

Query: 158 -LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
            ++  Y     I+ AR +FD++  +D++ WS MI GY Q   F + L +F +M+ + V+P
Sbjct: 259 AMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKP 318

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           D +V++ ++S+C+  G L  G+ VHE++  NN+  D  ++++LI MY  C          
Sbjct: 319 DAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKC---------- 368

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
                                G  ++A  +F +M EKD + W+++I G A N   +E+L 
Sbjct: 369 ---------------------GSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLN 407

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDM 394
           LF  M   G +P+ VT L V+ ACA+  ++++    H    K  +  + ++ +   ++D+
Sbjct: 408 LFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLD-HFESMKRLYSLEPQMKHYGCVVDL 466

Query: 395 YAKCGSLESA-REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGV 452
             + G LE A R + E     + + W  ++ +   HGD   A I   K+ + E  +    
Sbjct: 467 LGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNY 526

Query: 453 TFIGVLYACSH 463
           T +   YA +H
Sbjct: 527 TLLSNAYASAH 537


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/624 (37%), Positives = 354/624 (56%), Gaps = 49/624 (7%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLL-LTSFSLPTTTPSSLYYALSIF 74
           ++ +  C S+  +KQ HAQ+L  ++S H  NS L K+  L  F+          YA   F
Sbjct: 36  NSLLQQCLSIKQLKQIHAQLL--TNSIHKPNSFLYKIADLKDFA----------YASVFF 83

Query: 75  SQIPAPPSRVSNKFIRAIS--WSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           S I  P     N  IR +S  W ++   AL+ + +M   GL  +  ++P +  A +    
Sbjct: 84  SNILDPTEYSFNVMIRGLSTAW-NKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLA 142

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           +  G   H    + G   D  V   L+ MY  CGK+ DAR +FD++S +D+V W+ MI G
Sbjct: 143 VENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISG 202

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y +     E + LF EM  +  +P+EM L  +L AC   G+L  G  V EF+++N + L+
Sbjct: 203 YSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLN 262

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             + S LI MY  C                               G +  AR IFD M +
Sbjct: 263 YFMGSALIHMYGKC-------------------------------GDLVSARRIFDSMKK 291

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           KD + W+AMI+GYA+N   +EA+KLF +M++    PD++T++ ++SACA +G LD  +++
Sbjct: 292 KDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQV 351

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
            +Y  +  F  D+ V  A++DMYAKCGSL++A  VF  M  +N +SW +MI+A A HG A
Sbjct: 352 EIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQA 411

Query: 433 RNALIFFNKMKDE--SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
           + AL  F  M +E  ++ PN +TF+GVL AC HAGLVDEGR +F  M++ + + PK EHY
Sbjct: 412 QEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHY 471

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550
            CMVDLF RA  L EA + V TMP  P+ VI G+L+ AC+    I+++E   K LL+L+P
Sbjct: 472 SCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEP 531

Query: 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK 610
            + G  V+ S +YA  +RW D   +R  MK++G+ K   CS I++N++++EF   D  H+
Sbjct: 532 SNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGDVLHQ 591

Query: 611 QTDQIYEKLNEVISELKPAGYVPD 634
           +  +I++ L+ +I +L+  GY+P+
Sbjct: 592 EWIEIHQILDLLIDDLRREGYIPN 615


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/605 (35%), Positives = 347/605 (57%), Gaps = 3/605 (0%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT-TPSSLYYALSIFSQI 77
           +  C S+ H+ Q HA ++   H     +S+  +L+ +  +L        L +A  +F +I
Sbjct: 17  LRQCRSIQHLDQIHAHLV--VHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDRI 74

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
           P P   + N  +RA S S  P+ AL++   +L  G+  + F+ P +LKA      +   +
Sbjct: 75  PEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHAL 134

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
             HG+  KLGF    FV   L+  + + G + D+R  F +M+ R++V W+ MI GY Q G
Sbjct: 135 AAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAG 194

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
              E   LF EM+   +  D   L  +L ACS  GNL  G  VH  ++ +   +D  L +
Sbjct: 195 EVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGN 254

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
            L+ MY  CG + MA   FD + +KN+V  T+M+   ++ G V+  R  F+QM E++++ 
Sbjct: 255 ALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVS 314

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W+AMIS Y +     E L L+N M+  G+ PD+ T+  V+SAC   G L   + IH Y+ 
Sbjct: 315 WNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVR 374

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
            N     + + N+++DMYA+CG +++A  +F  M  +NVISW  +I A A+HG A+  + 
Sbjct: 375 DNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVT 434

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
           FF  M  ++  P+ +TF+G+L ACSH GL++ G   F +M   YN+ P+ EHYGCMVDL 
Sbjct: 435 FFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLL 494

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557
           GR   L +A+ L++ M   P+VV+WG+L+ ACR+HG +E+ +   KQLL+L+    G  V
Sbjct: 495 GRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKLVIKQLLELEGITGGLFV 554

Query: 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYE 617
           L+ N++ +  +W+D+ +LRK MKE+G  K+   S IE+ N ++EF   D  H+ T++IY 
Sbjct: 555 LICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKNIIHEFGVEDLRHESTNEIYA 614

Query: 618 KLNEV 622
            ++++
Sbjct: 615 AVDQL 619


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/587 (37%), Positives = 341/587 (58%), Gaps = 2/587 (0%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           + H    K G    P     LV  Y     + D RL+FD+   RD+  +S ++     + 
Sbjct: 24  RAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHSE 83

Query: 198 LFDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
             + VL L   M  ++ + PD  VL+ I SA +R  +L  G+ +H   + +  + D  ++
Sbjct: 84  SPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVK 143

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           S+LI MY  CG  D A+ +FD ++ KN V+ TA++SGY   G+ ++A  +F  M  + L 
Sbjct: 144 SSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLF 203

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS-VISACAHLGVLDQAQRIHLY 375
            W+A+ISG+  +     A+KLF +M+  G+  D   +LS  I   A L      +++H  
Sbjct: 204 AWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSL 263

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
             +  F   + V NA++DMY+KC  + SAREVFE +  R++ISWT+M+   A HG A  A
Sbjct: 264 TMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEA 323

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
              +++M    + PN VTF+G++YACSHAGLV +GR++F SM  EY I P+ +HY C +D
Sbjct: 324 FSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLD 383

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555
           L  R+  L EA EL+ TMP+ P+   W SL++AC+ +   E++   A  LL+L P +   
Sbjct: 384 LLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRPKYPST 443

Query: 556 LVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQI 615
            VLLSN+YA + +W  V  +RK M +  I KE   S IE+  E   F   +      ++I
Sbjct: 444 YVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPIDLREEI 503

Query: 616 YEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRI 675
              L E++SE++  GYVPD  S + DLE+ EK   +  HSE+LA+ +G++ S   S IR+
Sbjct: 504 LGFLEELVSEMRQRGYVPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILRSPLGSVIRV 563

Query: 676 VKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           VKNLRVC DCH  +K +S+++ R+I++RD +RFHH++ G CSC ++W
Sbjct: 564 VKNLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 227/472 (48%), Gaps = 27/472 (5%)

Query: 28  MKQTHAQILKLSHSHHS-QNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSN 86
           +++ HA+++K   + H    +LL+     S  LP T          +F + P     + +
Sbjct: 22  LRRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTR--------LLFDETPRRDLHLYS 73

Query: 87  KFIRAISWSHRPKHALKVFLKMLN-EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
             + A+S S  P+  L +  +ML+ + L  D F    I  A AR   L  G Q+HG    
Sbjct: 74  SLLAAVSHSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVA 133

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
             + SD  V++ L+ MY  CG   DAR +FD +  ++ V W+ +I GY  NG  DE L L
Sbjct: 134 SPYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALEL 193

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL-DAHLQSTLITMYA 264
           F  M    +       + ++S   R+G       +   +  + V++ DA + S+ I   A
Sbjct: 194 FRSMPGRTL----FAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAA 249

Query: 265 NCGCMDMAKGLFDKVLL----KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
           +     + + L    +      +++V  A+V  YS+   +  AR +F+++  +D+I W+ 
Sbjct: 250 DLAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTT 309

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           M+ G A++   +EA  L++ M + G+KP++VT + +I AC+H G++ + +++   + K  
Sbjct: 310 MLVGEAQHGRAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSM-KGE 368

Query: 381 FGGDLRVNN--AIIDMYAKCGSLESAREVFERMRR-RNVISWTSMINAFAIHGDARNAL- 436
           +G + R+ +    +D+ ++ G L  A E+   M    +  +W S+++A   + +A  ++ 
Sbjct: 369 YGINPRLQHYTCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIR 428

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHA-GLVDEGREIFASMTNEYNIPPKY 487
           +  N ++     P+    +  +YA +     VD  R++ A M  E    P Y
Sbjct: 429 VADNLLELRPKYPSTYVLLSNVYAVNGKWDSVDTVRKLMADM--EIRKEPGY 478


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/622 (37%), Positives = 355/622 (57%), Gaps = 31/622 (4%)

Query: 101  ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
            + ++F +M  EG+  ++F++P IL+       L  G Q+H    K GF  + +V + L+ 
Sbjct: 447  SFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLID 506

Query: 161  MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
            MY   G++  A  +  ++   D+V W+ MI GY Q+ +F E L LFEEM+   ++ D + 
Sbjct: 507  MYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIG 566

Query: 221  LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
             +  +SAC+    L  G+ +H                              A G      
Sbjct: 567  FASAISACAGIRALRQGQQIH--------------------------AQSYAAGFG---- 596

Query: 281  LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
              +L ++ A++S Y+R G++++A L F+++ +K+ I W++++SG A++ + +EAL++F  
Sbjct: 597  -ADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVR 655

Query: 341  MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
            M     + +  T  S ISA A L  + Q Q+IH  + K  +  +  V+N++I +YAK GS
Sbjct: 656  MLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGS 715

Query: 401  LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
            +  A   F  M  RNVISW +MI  ++ HG    AL  F +MK   I PN VTF+GVL A
Sbjct: 716  ISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSA 775

Query: 461  CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
            CSH GLV EG + F SM   +++ PK EHY C+VDL GRA  L  A+E ++ MP   + +
Sbjct: 776  CSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAM 835

Query: 521  IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
            IW +L++AC +H  IE+ E AA  LL+L+P+     VL+SNIYA  ++W      RK MK
Sbjct: 836  IWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMK 895

Query: 581  ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
            +RG+ KE   S IE+ N V+ F   D+ H  T+QIYE +  +       GYV D  S L 
Sbjct: 896  DRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLN 955

Query: 641  DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
            + E  +K  +   HSEKLA+ +GL+S   +  IR++KNLRVC DCHN+IK VSK+  R I
Sbjct: 956  ESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSI 1015

Query: 701  VIRDRTRFHHYKDGVCSCKDYW 722
            ++RD  RFHH+  GVCSCKD+W
Sbjct: 1016 IVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 142/528 (26%), Positives = 234/528 (44%), Gaps = 47/528 (8%)

Query: 13  LPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYY--- 69
            PT   +SS  S +    T  Q+ +L    H    L++K    S +       +LY    
Sbjct: 258 FPTPYVLSSVLSAS----TKIQLFELGEQLHC---LVIKWGFHSETYVCNGLVALYSRSR 310

Query: 70  ----ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
               A  IFS + +      N  I  +        AL++F KM  + L  D  +   +L 
Sbjct: 311 KLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLS 370

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A A    L +GMQ+H    K G  +D  ++  L+ +Y  C  +  A   F      +IV 
Sbjct: 371 ACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVL 430

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+VM+  Y Q     +   +F +M+M  + P++     IL  C+  G L  GE +H  +I
Sbjct: 431 WNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI 490

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
                L+ ++ S LI MYA  G + +A  +  ++   ++V  TAM++GY           
Sbjct: 491 KTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGY----------- 539

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
                V+ D+                 EAL+LF EM+  G++ D +   S ISACA +  
Sbjct: 540 -----VQHDMF---------------SEALQLFEEMEYRGIQFDNIGFASAISACAGIRA 579

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L Q Q+IH       FG DL +NNA+I +YA+CG ++ A   FE++  +N ISW S+++ 
Sbjct: 580 LRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSG 639

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
            A  G    AL  F +M     + N  T+   + A +    + +G++I  SM  +     
Sbjct: 640 LAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIH-SMVLKTGYDS 698

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           + E    ++ L+ ++  + +A      M    NV+ W +++     HG
Sbjct: 699 EREVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGYSQHG 745



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/466 (26%), Positives = 219/466 (46%), Gaps = 38/466 (8%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A+ +F +         NK I              +F +ML EG+T + ++F  +LKA   
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG 171

Query: 130 AEGLLEGM-QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
            +     + QVH      GF S P V   L+ +Y   G I  A+ +F+ +  +DIV W  
Sbjct: 172 GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVA 231

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI G  QNGL +E + LF +M  S + P   VLS +LSA ++      GE +H       
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLH------- 284

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
                              C+ +  G   +  + N      +V+ YSR+ ++  A  IF 
Sbjct: 285 -------------------CLVIKWGFHSETYVCN-----GLVALYSRSRKLISAERIFS 320

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
            M  +D + ++++ISG  +      AL+LF +MQ   +KPD +T+ S++SACA +G L +
Sbjct: 321 TMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHK 380

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
             ++H +  K     D+ +  +++D+Y+KC  +E+A + F      N++ W  M+ A+  
Sbjct: 381 GMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQ 440

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
             +  ++   F +M+ E + PN  T+  +L  C+  G +  G +I    T+      +  
Sbjct: 441 LDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIH---THVIKTGFQLN 497

Query: 489 HYGC--MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
            Y C  ++D++ +   L  AL ++  +P   +VV W +++A    H
Sbjct: 498 VYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQH 542



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 197/425 (46%), Gaps = 37/425 (8%)

Query: 118 FSFPPILKAIARAEGLLE----GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
           F  P +L ++  A   ++    G Q+H L  K GF S+ +V  GLV +Y    K++ A  
Sbjct: 258 FPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAER 317

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +F  M+ RD V ++ +I G  Q G  D  L LF +M+   ++PD + ++ +LSAC+  G 
Sbjct: 318 IFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGA 377

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           L  G  +H   I   ++ D  L+ +L+ +Y+ C  ++ A   F     +N+V+   M+  
Sbjct: 378 LHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVA 437

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           Y +   + D                               + ++F +MQ+ GM P++ T 
Sbjct: 438 YGQLDNLSD-------------------------------SFEIFRQMQMEGMIPNQFTY 466

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
            S++  C  LG L   ++IH ++ K  F  ++ V + +IDMYAK G L  A  +  R+  
Sbjct: 467 PSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPE 526

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
            +V+SWT+MI  +  H     AL  F +M+   I  + + F   + AC+    + +G++I
Sbjct: 527 DDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQI 586

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            A  +              ++ L+ R   ++EA    E +    N + W SL++     G
Sbjct: 587 HAQ-SYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIG-DKNNISWNSLVSGLAQSG 644

Query: 534 EIELA 538
             E A
Sbjct: 645 YFEEA 649



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 195/433 (45%), Gaps = 55/433 (12%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP 64
           +Q T P  L T T++ +   L   +Q H  ++K   +    N  +  +L+  ++      
Sbjct: 462 NQFTYPSILRTCTSLGA---LYLGEQIHTHVIK---TGFQLNVYVCSVLIDMYA----KY 511

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
             L  AL I  ++P          I           AL++F +M   G+  D   F   +
Sbjct: 512 GQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAI 571

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            A A    L +G Q+H      GFG+D  +   L+ +Y  CG+I +A L F+K+  ++ +
Sbjct: 572 SACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNI 631

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ ++ G  Q+G F+E L +F  M  +  E +       +SA +   N+  G+ +H  +
Sbjct: 632 SWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMV 691

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           +      +  + ++LI++YA  G +  A   F+ +  +N++   AM++GYS+ G      
Sbjct: 692 LKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHG------ 745

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                       C               EAL+LF EM+VCG+ P+ VT + V+SAC+H+G
Sbjct: 746 ------------C-------------GMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIG 780

Query: 365 VLDQAQ-------RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNV 416
           ++ +         +IH  + K+           ++D+  + G L+ A E  + M    + 
Sbjct: 781 LVKEGLDYFESMFKIHDLVPKSEH------YVCVVDLLGRAGQLDRAMEYIKEMPIPADA 834

Query: 417 ISWTSMINAFAIH 429
           + W ++++A  IH
Sbjct: 835 MIWRTLLSACVIH 847



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 192/426 (45%), Gaps = 42/426 (9%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           M   G+  +  ++  +L+    +  L E M++H   +K GF  +P +   LV  Y   G 
Sbjct: 49  MEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGD 108

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
              A  +FD+ S R +  W+ MI  +       +V  LF  M    + P+    + +L A
Sbjct: 109 QHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKA 168

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           C                +  ++A +   Q    T Y          G     L+ NL++ 
Sbjct: 169 C----------------VGGDIAFNYVKQVHSRTFY---------YGFDSSPLVANLLID 203

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
                 YS+ G +E A+ +F+ +  KD++ W AMISG ++N   +EA+ LF +M    + 
Sbjct: 204 L-----YSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIF 258

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           P    + SV+SA   + + +  +++H  + K  F  +  V N ++ +Y++   L SA  +
Sbjct: 259 PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERI 318

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F  M  R+ +S+ S+I+     G +  AL  F KM+ + + P+ +T   +L AC+  G +
Sbjct: 319 FSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGAL 378

Query: 468 DEGRE-----IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
            +G +     I A M+ +  +       G ++DL+ +   +  A +   T     N+V+W
Sbjct: 379 HKGMQLHSHAIKAGMSADIILE------GSLLDLYSKCADVETAHKFFLTTE-TENIVLW 431

Query: 523 GSLMAA 528
             ++ A
Sbjct: 432 NVMLVA 437



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 129/297 (43%), Gaps = 16/297 (5%)

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
           ++V  Y R G    A  +FD+   + +  W+ MI  +       +   LF  M   G+ P
Sbjct: 98  SLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITP 157

Query: 349 DKVTMLSVISACAHLGV-LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           +  T   V+ AC    +  +  +++H       F     V N +ID+Y+K G +ESA++V
Sbjct: 158 NGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKV 217

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F  +  +++++W +MI+  + +G    A++ F  M    I P       VL A +   L 
Sbjct: 218 FNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLF 277

Query: 468 DEGREIFASMTNEYNIPPKYEHYGC--MVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
           + G ++   +  ++      E Y C  +V L+ R+  L  A  +  TM  + + V + SL
Sbjct: 278 ELGEQLHC-LVIKWGFHS--ETYVCNGLVALYSRSRKLISAERIFSTMN-SRDGVSYNSL 333

Query: 526 MAACRVHG--EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           ++     G  +  L  F   Q   L PD      LLS   +       VG L K M+
Sbjct: 334 ISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACAS-------VGALHKGMQ 383



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 1/199 (0%)

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
           ++L N M+  G++ +    L ++  C   G L +  R+H  I K+ F G+  + ++++D 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y + G    A +VF+    R+V SW  MI+ F            F +M  E I PNG TF
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
            GVL AC    +     +   S T  Y           ++DL+ +   +  A ++   + 
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 515 FAPNVVIWGSLMAACRVHG 533
              ++V W ++++    +G
Sbjct: 223 M-KDIVTWVAMISGLSQNG 240


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 250/723 (34%), Positives = 389/723 (53%), Gaps = 53/723 (7%)

Query: 13  LPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT-----TTPSSL 67
           +P ST +S+  +L + K            H++Q S  L      FS  T        S +
Sbjct: 40  IPPSTYLSNHFTLLYSK--------CGSLHNAQTSFDLTQYPNVFSYNTLINAYAKHSLI 91

Query: 68  YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
           + A  +F +IP P     N  I A +     + AL++F ++      +D F+   ++ A 
Sbjct: 92  HLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIAC 151

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY---RDIV 184
               GL+   Q+H      G+     V   ++  Y   G + +AR +F +M     RD V
Sbjct: 152 GDDVGLVR--QLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEV 209

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ MI    Q+    E + LF EM    ++ D   ++ +L+A +   +L  G   H  +
Sbjct: 210 SWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMM 269

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           I +    ++H+ S LI +Y+ C                              AG + + R
Sbjct: 270 IKSGFHGNSHVGSGLIDLYSKC------------------------------AGGMVECR 299

Query: 305 LIFDQMVEKDLICWSAMISGYAE-NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
            +F+++   DL+ W+ MISG+++  +  ++ +  F EMQ  G  PD  + + V SAC++L
Sbjct: 300 KVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNL 359

Query: 364 GVLDQAQRIH-LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
                 +++H L I  +     + VNNA++ MY+KCG++  AR VF+ M   N++S  SM
Sbjct: 360 SSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSM 419

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I  +A HG    +L  F  M  + I PN +TFI VL AC H G V+EG++ F  M   + 
Sbjct: 420 IAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFR 479

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           I P+ EHY CM+DL GRA  L+EA  ++ETMPF P  + W +L+ ACR HG +ELA  AA
Sbjct: 480 IEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAA 539

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
            + LQL+P +    V+LSN+YA   RW++   +++ M+ERG+ K+  CS IE++ +V+ F
Sbjct: 540 NEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVF 599

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV---DLEDEEKREVILWHSEKLA 659
           +  D SH    +I+  + E++ ++K AGYVPDI  ALV   ++E +EK   +L+HSEKLA
Sbjct: 600 VAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLA 659

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           + +GLIS+++   I +VKNLR+C DCHN IKL+S +  REI +RD  RFH +K+G CSC 
Sbjct: 660 VAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEGHCSCG 719

Query: 720 DYW 722
           DYW
Sbjct: 720 DYW 722



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 124/493 (25%), Positives = 235/493 (47%), Gaps = 27/493 (5%)

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +F  +LKA      L+ G  +H L  K       ++      +Y  CG + +A+  FD  
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
            Y ++  ++ +I+ Y ++ L      +F+E+     +PD +  + +++A +  G      
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIP----QPDIVSYNTLIAAYADRGECRPAL 126

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCG-CMDMAKGLFDKVLLKNL----VVSTAMVSG 293
            +   + +    LD    S +I     CG  + + + L   V++        V+ A+++ 
Sbjct: 127 RLFAEVRELRFGLDGFTLSGVIIA---CGDDVGLVRQLHCFVVVCGYDCYASVNNAVLAC 183

Query: 294 YSRAGQVEDARLIFDQMVE---KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           YSR G + +AR +F +M E   +D + W+AMI    ++    EA++LF EM   G+K D 
Sbjct: 184 YSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDM 243

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC-GSLESAREVFE 409
            TM SV++A   +  L    + H  + K+ F G+  V + +ID+Y+KC G +   R+VFE
Sbjct: 244 FTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFE 303

Query: 410 RMRRRNVISWTSMINAFAIHGD-ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
            +   +++ W +MI+ F+ + D + + +  F +M+     P+  +F+ V  ACS+     
Sbjct: 304 EIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPS 363

Query: 469 EGREIFASMTNEYNIP-PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
            G+++ A +  + +IP  +      +V ++ +   + +A  + +TMP   N+V   S++A
Sbjct: 364 VGKQVHA-LAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP-EHNMVSLNSMIA 421

Query: 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587
               HG     E  + +L +L    D A   ++ I A        G++ +  K   ++KE
Sbjct: 422 GYAQHG----VEVESLRLFELMLQKDIAPNTITFI-AVLSACVHTGKVEEGQKYFNMMKE 476

Query: 588 RACSRIEMNNEVY 600
           R   RIE   E Y
Sbjct: 477 RF--RIEPEAEHY 487


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/608 (35%), Positives = 341/608 (56%), Gaps = 42/608 (6%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +   + A A+++ L +  +VH       F  D F+   L+ +Y  CG +L+AR +FD+M 
Sbjct: 54  YHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMR 113

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            +D+V W+ +I GY QN + +E + L   M     +P+    + +L A     +   G  
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQ 173

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H   +  +   D ++ S L+ MYA                               R G 
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYA-------------------------------RCGM 202

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           ++ A  +FD++  K+ + W+A+ISG+A     + AL  F EM   G +    T  SV S+
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSS 262

Query: 360 CAHLGVLDQAQRIHLYIDKN-----AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
            A LG L+Q + +H ++ K+     AF G     N ++DMYAK GS+  AR+VF+R+  +
Sbjct: 263 IARLGALEQGKWVHAHMIKSRQKMTAFAG-----NTLLDMYAKSGSMIDARKVFDRVDDK 317

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           ++++W +M+ AFA +G  + A+  F +M+   I  N VTF+ +L ACSH GLV EG+  F
Sbjct: 318 DLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYF 377

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
             M  EY++ P+ +H+  +V L GRA LL  AL  +  MP  P   +WG+L+AACR+H  
Sbjct: 378 -EMMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKN 436

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
            ++ +FAA  + +LDPD  G  VLL NIYA   +W     +R+ MK  G+ KE ACS +E
Sbjct: 437 AKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVE 496

Query: 595 MNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWH 654
           M N V+ F+  D +H + ++IY+   ++  +++  GYVPD+   L+ ++D+E+   + +H
Sbjct: 497 MENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYVLLRVDDQEREANLQYH 556

Query: 655 SEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDG 714
           SEKLAL + LI     + IRI+KN+R+C DCH+  K +SKV+ REIV+RD  RFHH+ +G
Sbjct: 557 SEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSNG 616

Query: 715 VCSCKDYW 722
            CSC DYW
Sbjct: 617 SCSCADYW 624



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 159/332 (47%), Gaps = 33/332 (9%)

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
           VL   + +    + P   V    ++AC+++ NL     VH  +  +  A DA L ++LI 
Sbjct: 35  VLRDLDLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIH 94

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
           +Y  CG                                V +AR +FD+M  KD++ W+++
Sbjct: 95  LYCKCG-------------------------------SVLEARKVFDEMRRKDMVSWTSL 123

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF 381
           I+GYA+N+ P+EA+ L   M     KP+  T  S++ A          ++IH    K  +
Sbjct: 124 IAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDW 183

Query: 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNK 441
             D+ V +A++DMYA+CG ++ A  VF+++  +N +SW ++I+ FA  GD   AL+ F +
Sbjct: 184 HEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAE 243

Query: 442 MKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501
           M     +    T+  V  + +  G +++G+ + A M         +     ++D++ ++ 
Sbjct: 244 MLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAG-NTLLDMYAKSG 302

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            + +A ++ + +    ++V W +++ A   +G
Sbjct: 303 SMIDARKVFDRVD-DKDLVTWNTMLTAFAQYG 333



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 186/428 (43%), Gaps = 39/428 (9%)

Query: 7   PTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           PT  +     TA +   +L   ++ HA    L+ S  + ++ L   L+  +        S
Sbjct: 49  PTPRVYHTFITACAQSKNLEDARKVHAH---LASSRFAGDAFLDNSLIHLY----CKCGS 101

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           +  A  +F ++           I   + +  P+ A+ +   ML      + F+F  +LKA
Sbjct: 102 VLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKA 161

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
                    G Q+H L  K  +  D +V + L+ MY  CG +  A  +FDK+  ++ V W
Sbjct: 162 AGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSW 221

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +I G+ + G  +  L  F EM  +  E      S + S+ +R G L  G+ VH  +I 
Sbjct: 222 NALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIK 281

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
           +   + A   +TL+ MYA  G M  A+ +FD+V  K+LV                     
Sbjct: 282 SRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVT-------------------- 321

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
                      W+ M++ +A+    +EA+  F EM+  G+  ++VT L +++AC+H G++
Sbjct: 322 -----------WNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLV 370

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE-VFERMRRRNVISWTSMINA 425
            + +R    + +     ++     ++ +  + G L  A   +F+         W +++ A
Sbjct: 371 KEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAA 430

Query: 426 FAIHGDAR 433
             +H +A+
Sbjct: 431 CRMHKNAK 438


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/680 (34%), Positives = 373/680 (54%), Gaps = 19/680 (2%)

Query: 58  SLPTTTPSS------LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE 111
           S+    PSS      L+ A  +F   P          I   +   R    ++ F +ML+E
Sbjct: 59  SVRGCVPSSSVIARGLHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDE 118

Query: 112 -GLTI-DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL 169
            G T  + F    +L+  A    +  G ++HG   + G   D  +   ++ MY  CG   
Sbjct: 119 CGATAPNAFVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHG 178

Query: 170 DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229
            AR  F  M+ +D   W+++I    Q+G       LF+E  + +V     ++S ++    
Sbjct: 179 RARRAFGAMAQKDATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLM---- 234

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL----KNLV 285
           R G+ +      + ++   V    +  S +  +       D+ + L  +V++    ++  
Sbjct: 235 RHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAF 294

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQ---MVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           V  +++  Y + G++E A  IFD+     E     WS M++GY +N   +EAL+ F  M 
Sbjct: 295 VGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRML 354

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
             G+   +  + SV SACA+ G+++Q +++H +++K     D  + +AI+DMY+K GSLE
Sbjct: 355 REGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLE 414

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            A  +F   + +NV  WT+M+ ++A HG  R AL  F++MK E I PN +T + VL ACS
Sbjct: 415 DACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACS 474

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
           H+GLV +G   F  M  EY I P  EHY CMVDL+GRA LL +A   +E    +   V+W
Sbjct: 475 HSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVW 534

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582
            +L++ACR+H  IE A+ A+++L+QL+    G+ VL+SN+YA + +W D  +LR SMKER
Sbjct: 535 KTLLSACRLHKHIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKER 594

Query: 583 GILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDL 642
            + K+   S I + N V+ F+  D SH ++ +IY  L +++  LK  GY       + D+
Sbjct: 595 RVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVHDI 654

Query: 643 EDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVI 702
           E+E++   + +HSEKLA+ +G+IS+   + +RI KNLRVCEDCH  IK +++   REIV+
Sbjct: 655 EEEQRETSLKFHSEKLAIAFGIISTPVGTALRIFKNLRVCEDCHEAIKFITRATDREIVV 714

Query: 703 RDRTRFHHYKDGVCSCKDYW 722
           RD  RFHH+KDG CSC+D+W
Sbjct: 715 RDLYRFHHFKDGQCSCEDFW 734


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/621 (36%), Positives = 356/621 (57%), Gaps = 20/621 (3%)

Query: 8   TKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFS-------LP 60
           T  L+ P  + + +C S + +KQ  AQ++            L  L+L  F+         
Sbjct: 49  TYVLSNPLLSLLENCKSFSQLKQIQAQMI------------LTGLILDGFASSRLISFCA 96

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFS 119
            +   +L Y + I + +  P     N  IR    S  P+  L ++ +ML   G   D ++
Sbjct: 97  ISESRNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYT 156

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +  + K  A       G ++ G   K+GF  D ++  G++ M  + G+   A  +FD+  
Sbjct: 157 YSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGC 216

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            RD+V W+ +I+GY +     E + ++++M   +V+PDE+ +  ++SAC++  +L  G  
Sbjct: 217 VRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGRE 276

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H +I ++ + L   L + L+ MY  CG ++  K LFD +  K +V  T M+ GY++ G 
Sbjct: 277 IHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGL 336

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           ++ A  +F  M EK+++ W+AMI    + N   EAL+LF EMQ   MKPDKVTML  +SA
Sbjct: 337 LDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSA 396

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           C+ LG LD     H YI K+    D+ +  A+IDMYAKCG++  A +VF  M RRN ++W
Sbjct: 397 CSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTW 456

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           T++I   A++G+  +A+ +F+KM D  + P+ +TF+GVL AC H GLV+EGR+ F  M +
Sbjct: 457 TAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKS 516

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
            +N+ P+ +HY CMV+L GRA LL EA EL++TMP   + ++WG+L  AC +H  + + E
Sbjct: 517 RFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGE 576

Query: 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
            AA +LL LDP   G  VLL+N+Y +  +W++   +RK M ERG+ K    S IE+N  +
Sbjct: 577 RAASKLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNGII 636

Query: 600 YEFLTADRSHKQTDQIYEKLN 620
            EF+  D+SH Q++QIYE  N
Sbjct: 637 NEFIVRDKSHPQSEQIYECFN 657


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/618 (35%), Positives = 347/618 (56%), Gaps = 34/618 (5%)

Query: 106 LKMLNEG-LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA 164
           L ++N G L  +R  +  +L        L +G  +H       F  D  +   ++ MY  
Sbjct: 93  LDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAK 152

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
           CG + +A+ +FDKM  +D+V W+V+I GY Q+G   E L LF +M     +P+E  LS +
Sbjct: 153 CGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSL 212

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L A     +  +G  +H F +     ++ H+ S+L+ MYA                    
Sbjct: 213 LKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYA-------------------- 252

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
                      R   + +A++IF+ +  K+++ W+A+I+G+A     +  ++LF +M   
Sbjct: 253 -----------RWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQ 301

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
           G +P   T  SV+ ACA  G L+Q + +H ++ K+       + N +IDMYAK GS++ A
Sbjct: 302 GFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDA 360

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
           ++VF R+ +++++SW S+I+ +A HG    AL  F +M    + PN +TF+ VL ACSH+
Sbjct: 361 KKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHS 420

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGS 524
           GL+DEG+  F  M  ++ I  +  H+  +VDL GRA  L EA + +E MP  P   +WG+
Sbjct: 421 GLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGA 479

Query: 525 LMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584
           L+ ACR+H  ++L  +AA+Q+ +LDP   G  VLLSNIYA   R  D  ++RK MKE G+
Sbjct: 480 LLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGV 539

Query: 585 LKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLED 644
            KE ACS +E+ NEV+ F+  D SH   ++I     ++  ++K  GYVPD    L  +  
Sbjct: 540 KKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQ 599

Query: 645 EEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRD 704
           +++   + +HSEKLAL + ++ +     IRI KN+R+C DCH+  K  S+V  REI++RD
Sbjct: 600 QDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRD 659

Query: 705 RTRFHHYKDGVCSCKDYW 722
             RFHH+  G+CSC+DYW
Sbjct: 660 TNRFHHFLHGMCSCRDYW 677



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 103/415 (24%), Positives = 197/415 (47%), Gaps = 37/415 (8%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
           S  ++ C+ L  +KQ  A    +  S    + +LL  +L  ++       SL  A  +F 
Sbjct: 109 SKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYA----KCGSLEEAQDLFD 164

Query: 76  QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
           ++P          I   S S +   AL +F KML+ G   + F+   +LKA         
Sbjct: 165 KMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHH 224

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G Q+H    K G+  +  V + L+ MY     + +A+++F+ ++ +++V W+ +I G+ +
Sbjct: 225 GRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHAR 284

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
            G  + V+ LF +M     EP     S +L AC+ +G+L  G+ VH  +I +     A++
Sbjct: 285 KGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYI 343

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            +TLI MYA  G +  AK +F +++ +++V   +++SGY++ G   +A  +F+QM++  +
Sbjct: 344 GNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKV 403

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
                                          +P+++T LSV++AC+H G+LD+ Q     
Sbjct: 404 -------------------------------QPNEITFLSVLTACSHSGLLDEGQYYFEL 432

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           + K+     +  +  ++D+  + G L  A +  E M  +     W +++ A  +H
Sbjct: 433 MKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMH 487


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/724 (32%), Positives = 385/724 (53%), Gaps = 49/724 (6%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP- 64
           +  +P  +    A++ C+++   +  H  +         + S L + L+ S +L +    
Sbjct: 222 EGVRPARITLVIALTVCATIRQAQAIHFIV---------RESGLEQTLVVSTALASAYAR 272

Query: 65  -SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
              LY A  +F +         N  + A +       A  +F +ML+EG++  + +   +
Sbjct: 273 LGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVT---L 329

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           + A      L  G  +HG   + G   D  +   L+ MY  CG   +AR +F ++   + 
Sbjct: 330 VNASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPC-NA 388

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS----RAGNLSYGEA 239
           V W+ MI G  Q G     + LF+ M++  + P       +L A +     A  ++ G  
Sbjct: 389 VSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRK 448

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H  I+    A +  + + ++ MYA+CG +D A   F +                   G 
Sbjct: 449 LHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQR-------------------GA 489

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           +ED           D++ W+A+IS  +++ H + AL  F  M + G+ P+++T ++V+ A
Sbjct: 490 MED---------RHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDA 540

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVIS 418
           CA    L + + +H ++  +    +L V  A+  MY +CGSLESARE+FE++   R+V+ 
Sbjct: 541 CAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVI 600

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           + +MI A++ +G A  AL  F +M+ E   P+  +F+ VL ACSH GL DEG EIF SM 
Sbjct: 601 FNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMR 660

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
             Y I P  +HY C VD+ GRA  L +A EL+  M   P V++W +L+ ACR + +++  
Sbjct: 661 QSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRG 720

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
             A   + +LDP  + A V+LSNI A   +W +  E+R  M+ RG+ KE   S IE+ + 
Sbjct: 721 RLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSR 780

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           V+EF+  DRSH ++++IY +L  + +E++  GYVPD    L  +++ EK  ++  HSE+L
Sbjct: 781 VHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERL 840

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+  G++SS  D+ +R++KNLRVCEDCHN  K +SK+  +EIV+RD  RFHH+ DG CSC
Sbjct: 841 AIALGVMSSSTDT-VRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSC 899

Query: 719 KDYW 722
            DYW
Sbjct: 900 GDYW 903



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 142/516 (27%), Positives = 244/516 (47%), Gaps = 57/516 (11%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV 84
           L+  ++ HA+I+ L       N LL +L L   SL             +FS++       
Sbjct: 45  LSQGRRIHARIVSLGLEEELGNHLL-RLYLKCESLGDVEE--------VFSRLEVRDEAS 95

Query: 85  SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
               I A +   + K A+ +F +M  EG+  D  +F  +LKA AR   L +G  +H    
Sbjct: 96  WTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIV 155

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           + G      +   L+ +YG+CG +  A L+F+KM  RD+V W+  I    Q+G     L 
Sbjct: 156 ESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKME-RDLVSWNAAIAANAQSGDLGIALE 214

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           LF+ M++  V P  + L   L+ C+    +   +A+H FI+      ++ L+ TL+    
Sbjct: 215 LFQRMQLEGVRPARITLVIALTVCA---TIRQAQAIH-FIVR-----ESGLEQTLV---- 261

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
                                VSTA+ S Y+R G +  A+ +FD+  E+D++ W+AM+  
Sbjct: 262 ---------------------VSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGA 300

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           YA++ H  EA  LF  M   G+ P KVT+++  + C+ L      + IH    +     D
Sbjct: 301 YAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSSLRF---GRMIHGCALEKGLDRD 357

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
           + + NA++DMY +CGS E AR +F+R+   N +SW +MI   +  G  + A+  F +M+ 
Sbjct: 358 IVLGNALLDMYTRCGSPEEARHLFKRI-PCNAVSWNTMIAGSSQKGQMKRAVELFQRMQL 416

Query: 445 ESIDPNGVTFIGVLYACS----HAGLVDEGREIFASMTN-EYNIPPKYEHYGCMVDLFGR 499
           E + P   T++ +L A +     A  + EGR++ + + +  Y   P       +V ++  
Sbjct: 417 EGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGT--AVVKMYAS 474

Query: 500 ANLLREALELVE--TMPFAPNVVIWGSLMAACRVHG 533
              + EA    +   M    +VV W +++++   HG
Sbjct: 475 CGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHG 510



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 221/463 (47%), Gaps = 49/463 (10%)

Query: 121 PPILKAIARAEG----LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
           P  L  + RA G    L +G ++H     LG   +  +   L+ +Y  C  + D   +F 
Sbjct: 29  PAHLVRLLRAAGDDRLLSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFS 86

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
           ++  RD   W+ +I  Y ++G     + +F  M+   V  D +    +L AC+R G+LS 
Sbjct: 87  RLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQ 146

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G ++H +I+++ +   + L + L+ +Y +CGC                 V++AM      
Sbjct: 147 GRSIHAWIVESGLKGKSVLANLLLHIYGSCGC-----------------VASAM------ 183

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
                   L+F++M E+DL+ W+A I+  A++     AL+LF  MQ+ G++P ++T++  
Sbjct: 184 --------LLFEKM-ERDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIA 234

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           ++ CA    + QAQ IH  + ++     L V+ A+   YA+ G L  A+EVF+R   R+V
Sbjct: 235 LTVCA---TIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDV 291

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           +SW +M+ A+A HG    A + F +M  E I P+ VT +     CS    +  GR I   
Sbjct: 292 VSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSS---LRFGRMIHGC 348

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
              E  +         ++D++ R     EA  L + +P   N V W +++A     G+++
Sbjct: 349 AL-EKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPC--NAVSWNTMIAGSSQKGQMK 405

Query: 537 LAE--FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
            A   F   QL  + P     L LL  + +  +  + + E RK
Sbjct: 406 RAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRK 448



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 130/488 (26%), Positives = 223/488 (45%), Gaps = 54/488 (11%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTT 63
           L +   P  +    A + CSSL   +  H   L+       ++ +L   LL  +    T 
Sbjct: 318 LHEGISPSKVTLVNASTGCSSLRFGRMIHGCALE---KGLDRDIVLGNALLDMY----TR 370

Query: 64  PSSLYYALSIFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
             S   A  +F +IP     VS N  I   S   + K A+++F +M  EG+   R ++  
Sbjct: 371 CGSPEEARHLFKRIPCNA--VSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLN 428

Query: 123 ILKAIA----RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +L+A+A     A  + EG ++H      G+ S+P + T +V MY +CG I +A   F + 
Sbjct: 429 LLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRG 488

Query: 179 SYR---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           +     D+V W+ +I    Q+G     L  F  M +  V P+++    +L AC+ A  L+
Sbjct: 489 AMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALT 548

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            GE VH+ +  + +  +  + + L +MY  CG ++ A+ +F+KV ++  VV         
Sbjct: 549 EGEIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVV--------- 599

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
                     IF+ M           I+ Y++N    EALKLF  MQ  G +PD+ + +S
Sbjct: 600 ----------IFNAM-----------IAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVS 638

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR- 412
           V+SAC+H G+ D+   I   + + ++G     ++    +D+  + G L  A E+   M  
Sbjct: 639 VLSACSHGGLADEGWEIFRSM-RQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDV 697

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY-ACSHAGLVDEGR 471
           +  V+ W +++ A   + D     +  N M  E +DP   +   VL    + AG  DE  
Sbjct: 698 KPTVLVWKTLLGACRKYRDVDRGRL-ANSMVRE-LDPGDESAYVVLSNILAGAGKWDEAA 755

Query: 472 EIFASMTN 479
           E+   M +
Sbjct: 756 EVRTEMES 763


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/626 (37%), Positives = 360/626 (57%), Gaps = 41/626 (6%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL++F +       + + ++  ++K  A  + L    Q+H    K GF     V T L  
Sbjct: 286 ALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALAD 345

Query: 161 MYGACGKILDARLMFDKMS-YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
            Y  CG++ DA  +F   +  R++V W+ +I G  QNG     + LF  M+   V P+E 
Sbjct: 346 AYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEF 405

Query: 220 VLSKILSACSRAGNLS-YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
             S +L A     +LS     +H  +I  N     H+ S                     
Sbjct: 406 TYSAMLKA-----SLSILPPQIHAQVIKTNYQ---HIPS--------------------- 436

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
                  V TA+++ YS+ G  EDA  IF  + +KD++ WSAM+S +A+    + A  LF
Sbjct: 437 -------VGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLF 489

Query: 339 NEMQVCGMKPDKVTMLSVISACA--HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           N+M + G+KP++ T+ SVI ACA    GV DQ ++ H    K  +   + V++A++ MY+
Sbjct: 490 NKMAIQGIKPNEFTISSVIDACACPSAGV-DQGRQFHAISIKYRYHDAICVSSALVSMYS 548

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           + G+++SA+ VFER   R+++SW SMI+ +A HG +  A+  F +M+   I  +GVTF+ 
Sbjct: 549 RKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLA 608

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           V+  C+H GLV EG++ F SM  ++ I P  EHY CMVDL+ RA  L E + L+  MPF 
Sbjct: 609 VIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFP 668

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
              ++W +L+ ACRVH  +EL +F+A +LL L+P      VLLSNIYA   +W++  E+R
Sbjct: 669 AGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVR 728

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
           K M  R + KE  CS I++ N+V+ F+  D+SH  +DQIY+KL  +I+ LK  GY P+  
Sbjct: 729 KLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTS 788

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
             L D+ +++K  +++ HSE+LAL +GLI++   + ++IVKNLRVC DCH  +K+VS + 
Sbjct: 789 FVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIE 848

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
            REI++RD +RFHH+  G CSC D+W
Sbjct: 849 DREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 197/433 (45%), Gaps = 43/433 (9%)

Query: 112 GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFG-SDPFVQTGLVGMYGACGKILD 170
           G+ +D  +   +LKA       + G Q+H L  K G    +    T LV MY  CG + +
Sbjct: 94  GVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCE 153

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
              +F+ M  +++V W+ ++ G     +  EV+ LF  M+   + P+    + +LSA + 
Sbjct: 154 GIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVAS 213

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
            G L  G+ VH   +         + ++L+ MYA CG ++                    
Sbjct: 214 QGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVE-------------------- 253

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
                      DA+ +F+ M  +D++ W+ +++G   N    EAL+LF+E +    K  +
Sbjct: 254 -----------DAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQ 302

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
            T  +VI  CA+L  L  A+++H  + K+ F     V  A+ D Y+KCG L  A  +F  
Sbjct: 303 STYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSM 362

Query: 411 MR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
               RNV+SWT++I+    +GD   A++ F++M+++ + PN  T+  +L     A L   
Sbjct: 363 TTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAML----KASLSIL 418

Query: 470 GREIFASM--TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
             +I A +  TN  +IP            FG         +++E      +VV W ++++
Sbjct: 419 PPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQ----KDVVAWSAMLS 474

Query: 528 ACRVHGEIELAEF 540
                G+ E A +
Sbjct: 475 CHAQAGDCEGATY 487



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 168/370 (45%), Gaps = 34/370 (9%)

Query: 171 ARLMFDKMSYRDIVPWS--VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228
           AR   D++  RD    +  V+ D Y + G+  EVL+ F   +   V  D   LS +L AC
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFD-YARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKAC 109

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
               +   GE +H   +                    CG         D+     +   T
Sbjct: 110 RSVPDRVLGEQLHCLCV-------------------KCG--------HDR---GEVSAGT 139

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
           ++V  Y + G V +   +F+ M +K+++ W+++++G A      E + LF  M+  G+ P
Sbjct: 140 SLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWP 199

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
           +  T  SV+SA A  G LD  QR+H    K      + V N++++MYAKCG +E A+ VF
Sbjct: 200 NPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVF 259

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
             M  R+++SW +++    ++     AL  F++ +         T+  V+  C++   + 
Sbjct: 260 NWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLA 319

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
             R++ + +  ++           + D + +   L +AL +      + NVV W ++++ 
Sbjct: 320 LARQLHSCVL-KHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISG 378

Query: 529 CRVHGEIELA 538
           C  +G+I LA
Sbjct: 379 CIQNGDIPLA 388



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 117/243 (48%), Gaps = 9/243 (3%)

Query: 30  QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFI 89
           Q HAQ++K ++ H      +   LL S+S   +T      ALSIF  I        +  +
Sbjct: 421 QIHAQVIKTNYQHIPS---VGTALLASYSKFGSTED----ALSIFKMIEQKDVVAWSAML 473

Query: 90  RAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA-RAEGLLEGMQVHGLGTKLGF 148
              + +   + A  +F KM  +G+  + F+   ++ A A  + G+ +G Q H +  K  +
Sbjct: 474 SCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRY 533

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
                V + LV MY   G I  A+++F++ + RD+V W+ MI GY Q+G   + +  F +
Sbjct: 534 HDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQ 593

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII-DNNVALDAHLQSTLITMYANCG 267
           M+ S ++ D +    ++  C+  G +  G+   + ++ D+ +       + ++ +Y+  G
Sbjct: 594 MEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAG 653

Query: 268 CMD 270
            +D
Sbjct: 654 KLD 656


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/689 (34%), Positives = 372/689 (53%), Gaps = 71/689 (10%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP--------IL 124
           +F+ +P   +   N  I   S +  P  A   +  +L E   +D     P        ++
Sbjct: 98  LFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVM 157

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY---- 180
            A A  +  L G QVH    +LGFG+  F  + LV MY   G I DA+ +FD+M      
Sbjct: 158 AASALGDRAL-GRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVV 216

Query: 181 ---------------------------RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN 213
                                      RD + W+ M+ G  QNGL  E L++F  M+   
Sbjct: 217 MYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEG 276

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           V  D+     IL+AC        G+ +H + I                           +
Sbjct: 277 VGIDQYTFGSILTACGALAASEEGKQIHAYTI---------------------------R 309

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
            L+D     N+ V +A+V  YS+   +  A  +F +M  K++I W+AMI GY +N   +E
Sbjct: 310 TLYDG----NIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEE 365

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
           A+++F+EMQ  G+KP+  T+ SVIS+CA+L  L++  + H     +     + V++A++ 
Sbjct: 366 AVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVT 425

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
           +Y KCGS+E A  +F+ M   + +S+T++++ +A  G A+  +  F KM  + + PNGVT
Sbjct: 426 LYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVT 485

Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
           FIGVL ACS +GLV++G   F SM  ++ I    +HY CM+DL+ R+  L+EA E +  M
Sbjct: 486 FIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQM 545

Query: 514 PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573
           P  P+ + W +L++ACR+ G++E+ ++AA+ LL+ DP +  + VLL +++A    W +V 
Sbjct: 546 PRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVA 605

Query: 574 ELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVP 633
            LR+ M++R + KE  CS I+  N V+ F   D+SH  +  IYEKL  + S++   GY P
Sbjct: 606 LLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKP 665

Query: 634 DIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVS 693
           D+ S L D+ D EK  ++  HSEKLA+ +GLI   ++  IR+VKNLRVC DCHN  K +S
Sbjct: 666 DVSSVLHDVADAEKVHMLSNHSEKLAIAFGLIFVPEEMPIRVVKNLRVCVDCHNATKFIS 725

Query: 694 KVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           K+  R+I++RD  RFH + +G+CSC D+W
Sbjct: 726 KITGRDILVRDAVRFHKFSNGICSCGDFW 754



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 148/335 (44%), Gaps = 51/335 (15%)

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           L+T YA  G + +A+ LFD +   NL    A++S  + A  + D   +F  M ++D + +
Sbjct: 51  LLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSY 110

Query: 319 SAMISGYAENNHPQEALK-----LFNEMQVCG--MKPDKVTMLSVISACAHLGVLDQAQR 371
           +A+I+G++    P  A       L  E  V G  ++P ++TM  ++ A + LG     ++
Sbjct: 111 NALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALGDRALGRQ 170

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAK-------------------------------CGS 400
           +H  I +  FG      + ++DMYAK                               C  
Sbjct: 171 VHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKM 230

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E AR VFE M  R+ I+WT+M+     +G    AL  F +M+ E +  +  TF  +L A
Sbjct: 231 VEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTA 290

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHY----GCMVDLFGRANLLREALELVETMPFA 516
           C      +EG++I A     Y I   Y+        +VD++ +   +R A  +   M   
Sbjct: 291 CGALAASEEGKQIHA-----YTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMT-C 344

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
            N++ W +++     +G+    E A +   ++  D
Sbjct: 345 KNIISWTAMIVG---YGQNGCGEEAVRVFSEMQTD 376


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/602 (36%), Positives = 346/602 (57%), Gaps = 4/602 (0%)

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L + AR   LL   ++H    K G      +   L+  YG CG I DA  +FD +  RD 
Sbjct: 11  LCSAARQSPLL-AKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDP 69

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG--NLSYGEAVH 241
           V W+ ++     +      L++   +  +   PD  V + ++ AC+  G  ++  G+ VH
Sbjct: 70  VAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVH 129

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
                +  + D  ++S+LI MYA  G  D  + +FD +   N +  T M+SGY+R+G+  
Sbjct: 130 ARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKF 189

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK-PDKVTMLSVISAC 360
           +A  +F Q   ++L  W+A+ISG  ++ +  +A  LF EM+  G+   D + + SV+ AC
Sbjct: 190 EAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGAC 249

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           A+L + +  +++H  +    +   L ++NA+IDMYAKC  L +A+ +F  M R++V+SWT
Sbjct: 250 ANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWT 309

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           S+I   A HG A  AL  +++M    + PN VTF+G+++ACSHAGLV +GR +F +M  +
Sbjct: 310 SIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVED 369

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
           + I P  +HY C++DLF R+  L EA  L+ TMP  P+   W +L+++C+ HG  ++A  
Sbjct: 370 HGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVR 429

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
            A  LL L P+   + +LLSNIYA    W+DV ++RK M      K    S I++    +
Sbjct: 430 IADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSH 489

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
            F   + SH   D+I   + E+  E++  GY PD  S L D++ +EK   + WHSE+LA+
Sbjct: 490 VFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAV 549

Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
            YGL+ +   + IRIVKNLRVC DCH  +KL+S +  REI +RD  R+HH+KDG CSC D
Sbjct: 550 AYGLLKAVPGTVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCND 609

Query: 721 YW 722
           +W
Sbjct: 610 FW 611



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/475 (25%), Positives = 230/475 (48%), Gaps = 34/475 (7%)

Query: 29  KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKF 88
           K+ HAQI+K   + H     +   LL ++         +  AL +F  +P          
Sbjct: 23  KKLHAQIIKAGLNQHEP---IPNTLLNAYG----KCGLIQDALQLFDALPRRDPVAWASL 75

Query: 89  IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL---EGMQVHGLGTK 145
           + A + S+RP  AL +   +L+ G   D F F  ++KA A   G+L   +G QVH     
Sbjct: 76  LTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANL-GVLHVKQGKQVHARFFL 134

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
             F  D  V++ L+ MY   G     R +FD +S  + + W+ MI GY ++G   E   L
Sbjct: 135 SPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRL 194

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL---DAHLQSTLITM 262
           F +    N+       + ++S   ++GN    +A H F+   +  +   D  + S+++  
Sbjct: 195 FRQTPYRNL----FAWTALISGLVQSGNGV--DAFHLFVEMRHEGISVTDPLVLSSVVGA 248

Query: 263 YANCGCMDMAKGLFDKVLLKN----LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
            AN    ++ K +   V+       L +S A++  Y++   +  A+ IF +M  KD++ W
Sbjct: 249 CANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSW 308

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI-HLYID 377
           +++I G A++   +EAL L++EM + G+KP++VT + +I AC+H G++ + + +    ++
Sbjct: 309 TSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVE 368

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNAL 436
            +     L+    ++D++++ G L+ A  +   M    +  +W +++++   HG+ + A+
Sbjct: 369 DHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAV 428

Query: 437 IFFNKMKD-ESIDPNGVTFIGVLYACSHAGL---VDEGREIFASMTNEYNIPPKY 487
              + + + +  DP+    +  +YA   AG+   V + R++   MT E    P Y
Sbjct: 429 RIADHLLNLKPEDPSSYILLSNIYA--GAGMWEDVSKVRKLM--MTLEAKKAPGY 479


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/613 (35%), Positives = 357/613 (58%), Gaps = 14/613 (2%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS---LYYA 70
           P  + +  C  L H+KQ  AQ++         N L+L    +S  +     S    L Y+
Sbjct: 55  PLLSLLEKCKLLLHLKQIQAQMII--------NGLILDPFASSRLIAFCALSESRYLDYS 106

Query: 71  LSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT---IDRFSFPPILKAI 127
           + I   I  P     N  IR  S S  PK +  ++ +ML  G      D F++P + K  
Sbjct: 107 VKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVC 166

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
           A       G  + G   KL       V    + M+ +CG + +AR +FD+   RD+V W+
Sbjct: 167 ADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWN 226

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
            +I+GY + G  ++ + +++ M+   V+PD++ +  ++S+CS  G+L+ G+  +E++ +N
Sbjct: 227 CLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKEN 286

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
            + +   L + L+ M++ CG +  A+ +FD +  + +V  T M+SGY+R G ++ +R +F
Sbjct: 287 GLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLF 346

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
           D M EKD++ W+AMI G  +    Q+AL LF EMQ    KPD++TM+  +SAC+ LG LD
Sbjct: 347 DDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALD 406

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
               IH YI+K +   ++ +  +++DMYAKCG++  A  VF  ++ RN +++T++I   A
Sbjct: 407 VGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLA 466

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
           +HGDA  A+ +FN+M D  I P+ +TFIG+L AC H G++  GR+ F+ M + +N+ P+ 
Sbjct: 467 LHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQL 526

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
           +HY  MVDL GRA LL EA  L+E+MP   +  +WG+L+  CR+HG +EL E AAK+LL+
Sbjct: 527 KHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLE 586

Query: 548 LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
           LDP   G  VLL  +Y +   W+D    R+ M ERG+ K   CS IE+N  V EF+  D+
Sbjct: 587 LDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDK 646

Query: 608 SHKQTDQIYEKLN 620
           S  ++++IY++L+
Sbjct: 647 SRPESEKIYDRLH 659


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/620 (35%), Positives = 353/620 (56%), Gaps = 35/620 (5%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           Q+HG   +    S   V T  +    +   +  A  +F +   ++   ++ +I G  +N 
Sbjct: 60  QIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENS 119

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
            F+  ++ F  M    + PD +    +L + +   N   G A+H  I+   +  D+ ++ 
Sbjct: 120 RFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRV 179

Query: 258 TLITMYAN---------------------------------CGCMDMAKG--LFDKVLLK 282
           +L+ MY                                   C   D+ K   LFD +  K
Sbjct: 180 SLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKK 239

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           +     ++++G+ + G +  A+ +F +M EK+++ W+ M++G+++N  P++AL+ F  M 
Sbjct: 240 DTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCML 299

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
             G +P+  T++S +SACA +G LD   RIH Y+  N F  +L +  A++DMYAKCG++E
Sbjct: 300 EEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIE 359

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            A +VF   + + ++ W+ MI  +AIHG  R AL +F  MK     P+ V F+ VL ACS
Sbjct: 360 HAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACS 419

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
           H+G V+EG + F +M   Y I P  +HY  +VD+ GRA  L EAL+ +  MP  P+ V+W
Sbjct: 420 HSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVW 479

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582
           G+L  ACR H  +E+AE A+K+LLQL+P H G+ V LSN YA   RW D   +R SM++ 
Sbjct: 480 GALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDH 539

Query: 583 GILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDL 642
           G  K+   S IE++++++ F+  D +H +  +IY KL+E+ +  +  GY  +I   L ++
Sbjct: 540 GAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGYTKEIECVLHNI 599

Query: 643 EDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVI 702
           E+EEK E + +HSEKLAL +G++S++  + +RIVKNLRVC DCH+F+K  SK+  REI++
Sbjct: 600 EEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFMKYASKMSKREIIL 659

Query: 703 RDRTRFHHYKDGVCSCKDYW 722
           RD  RFHH+ DGVCSC DYW
Sbjct: 660 RDMKRFHHFNDGVCSCGDYW 679



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 121/533 (22%), Positives = 218/533 (40%), Gaps = 115/533 (21%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           I + +S   ++Q H Q+ + +    S+       ++T F    ++ +S+ YA+SIF +  
Sbjct: 49  IHASNSTHKLRQIHGQLYRCNVFSSSR-------VVTQFISSCSSLNSVDYAISIFQRFE 101

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
              S + N  IR ++ + R + ++  F+ ML   ++ DR +FP +LK+ A       G  
Sbjct: 102 LKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRA 161

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMY---------------------------------GAC 165
           +H    K G   D FV+  LV MY                                 G C
Sbjct: 162 LHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYC 221

Query: 166 --GKILDARLMFDKMSYRD-------------------------------IVPWSVMIDG 192
             G ++ A  +FD M  +D                               +V W+ M++G
Sbjct: 222 RMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNG 281

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           + QNG  ++ L  F  M      P++  +   LSAC++ G L  G  +H ++  N   L+
Sbjct: 282 FSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLN 341

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             + + L+ MYA CG ++ A+ +F +   K L++ + M+                     
Sbjct: 342 LVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMI--------------------- 380

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
                W     G+A + H ++AL+ F  M+  G KPD V  L+V++AC+H G +++  + 
Sbjct: 381 -----W-----GWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLK- 429

Query: 373 HLYIDKNAFG----GDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFA 427
             + D    G      ++    ++DM  + G L+ A +    M    + + W ++  A  
Sbjct: 430 --FFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACR 487

Query: 428 IHGDARNALIFFNK-MKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            H +   A +   K ++ E   P    F+   YA    G  D+   +  SM +
Sbjct: 488 THKNVEMAELASKKLLQLEPKHPGSYVFLSNAYAS--VGRWDDAERVRVSMRD 538


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/718 (34%), Positives = 389/718 (54%), Gaps = 44/718 (6%)

Query: 13  LPTSTAISSCSSLTHMKQTHAQILKLSHSH-HSQNSLLLKLLLTSFSLPTTTPSSLYYAL 71
           +PTST +S+   L + K       +    H H  N      L+++++      S +  A 
Sbjct: 39  VPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLISAYA----KESYVEVAH 94

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
            +F ++P P S   N  I A +     + A ++FL+M    L +D F+   I+ A     
Sbjct: 95  QLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGINV 154

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY-RDIVPWSVMI 190
           GL+   Q+H L    G  S   V   L+  Y   G + +AR +F  +S  RD V W+ M+
Sbjct: 155 GLIR--QLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMV 212

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
             Y Q+    + L L+ EM +  +  D   L+ +L+A +   +L  G   H  +I +   
Sbjct: 213 VAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYH 272

Query: 251 LDAHLQSTLITMYANC-GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            ++H+ S LI +Y+ C GCM   + +FD++   +LV+   M+SGYS    + D       
Sbjct: 273 QNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSD------- 325

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                                  EAL+ F ++QV G +PD  +++ VISAC+++    Q 
Sbjct: 326 -----------------------EALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQG 362

Query: 370 QRIH-LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
           +++H L +  +     + VNNA+I MY+KCG+L  A+ +F+ M   N +S+ SMI  +A 
Sbjct: 363 RQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQ 422

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG    +L  F +M +    P  +TFI VL AC+H G V++G+  F  M  ++ I P+  
Sbjct: 423 HGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAG 482

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           H+ CM+DL GRA  L EA  L+ET+PF P    W +L+ ACR+HG +ELA  AA +LLQL
Sbjct: 483 HFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQL 542

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           DP +    V+L+NIY+ + R QD   +RK M++RG+ K+  CS IE+N  ++ F+  D  
Sbjct: 543 DPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTF 602

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLED---EEKREVILW-HSEKLALCYGL 664
           H    +I E L E++ ++K  GY P++ SALV  +D   + + E+ L  HSEKLA+ +GL
Sbjct: 603 HPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGGDDRVWQREEELRLGHHSEKLAVSFGL 662

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +S+++   I + KNLR+C DCHN IK +S+V  REI +RD  RFH +KDG CSC  YW
Sbjct: 663 MSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 208/421 (49%), Gaps = 12/421 (2%)

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +F   LK       L  G  +H L  K    +  ++    + +Y  C ++  AR +FD  
Sbjct: 10  NFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
              ++  ++ +I  Y +    +    LF+EM     +PD +  + +++A +R G+     
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMP----QPDSVSYNTLIAAYARRGDTQPAF 125

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYA-NCGCMDMAKGLFDKVLLKNLV-VSTAMVSGYSR 296
            +   + +  + +D    S +IT    N G +     L     L + V V  A+++ YS+
Sbjct: 126 QLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSK 185

Query: 297 AGQVEDARLIFDQMVE-KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
            G +++AR IF  + E +D + W++M+  Y ++    +AL+L+ EM V G+  D  T+ S
Sbjct: 186 NGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLAS 245

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS-LESAREVFERMRRR 414
           V++A  ++  L    + H  + K+ +  +  V + +ID+Y+KCG  +   R+VF+ +   
Sbjct: 246 VLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNP 305

Query: 415 NVISWTSMINAFAIHGD-ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           +++ W +MI+ ++++ D +  AL  F +++     P+  + + V+ ACS+     +GR++
Sbjct: 306 DLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQV 365

Query: 474 FASMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
              +  + +IP  +      ++ ++ +   LR+A  L +TMP   N V + S++A    H
Sbjct: 366 HG-LALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQH 423

Query: 533 G 533
           G
Sbjct: 424 G 424



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 165/342 (48%), Gaps = 14/342 (4%)

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
           + L  C    +L  G+++H   I + V    +L +  + +Y+ C  +  A+ +FD     
Sbjct: 13  QFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDC 72

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           N+     ++S Y++   VE A  +FD+M + D + ++ +I+ YA     Q A +LF EM+
Sbjct: 73  NVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMR 132

Query: 343 VCGMKPDKVTMLSVISACA-HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
              +  D  T+  +I+AC  ++G++ Q   + +    +++   + V NA+I  Y+K G L
Sbjct: 133 EAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSY---VSVGNALITSYSKNGFL 189

Query: 402 ESAREVFERMRR-RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           + AR +F  +   R+ +SW SM+ A+  H +   AL  + +M    +  +  T   VL A
Sbjct: 190 KEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTA 249

Query: 461 CSHAGLVDEGREIFASMTNE-YNIPPKYEHYGC-MVDLFGRANLLREALELVETMPFAPN 518
            ++   +  G +  A +    Y+   +  H G  ++DL+ +          V      P+
Sbjct: 250 FTNVQDLLGGLQFHAKLIKSGYH---QNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPD 306

Query: 519 VVIWGSLMAACRVHGEIE---LAEFAAKQLLQLDPDHDGALV 557
           +V+W ++++   ++ ++    L  F   Q++   PD D +LV
Sbjct: 307 LVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPD-DCSLV 347


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/590 (38%), Positives = 345/590 (58%), Gaps = 6/590 (1%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY-FQN 196
           Q H         S P     L+ +  AC  +  A  +FD++   D+  ++ MI  +    
Sbjct: 34  QTHAQLITTALISHPVSANKLLKL-AACASLSYAHKLFDQIPQPDLFIYNTMIKAHSLSP 92

Query: 197 GLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
                 L +F  +     + P+        SAC     +  GE V    +   +  +  +
Sbjct: 93  HSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQVRIHAVKVGLENNVFV 152

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            + LI MY   G +  ++ +F   + ++L     +++ Y  +G +  A+ +FD M E+D+
Sbjct: 153 VNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDV 212

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + WS +I+GY +     EAL  F++M   G KP++ T++S ++AC++L  LDQ + IH Y
Sbjct: 213 VSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAY 272

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF-ERMRRRNVISWTSMINAFAIHGDARN 434
           I K     + R+  +IIDMYAKCG +ESA  VF E   ++ V  W +MI  FA+HG    
Sbjct: 273 IGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNE 332

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           A+  F +MK E I PN VTFI +L ACSH  +V+EG+  F  M ++Y I P+ EHYGCMV
Sbjct: 333 AINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMV 392

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DL  R+ LL+EA +++ +MP AP+V IWG+L+ ACR++ ++E      + +  +DP+H G
Sbjct: 393 DLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNHIG 452

Query: 555 ALVLLSNIYAKDKRWQDVGELR-KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTD 613
             VLLSNIY+   RW +   LR K+   R   K   CS IE+    ++FL  D+SH Q+ 
Sbjct: 453 CHVLLSNIYSTSGRWNEARILREKNEISRDRKKIPGCSSIELKGTFHQFLVGDQSHPQSR 512

Query: 614 QIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL-WHSEKLALCYGLISSKKDSC 672
           +IY  L+E+ ++LK AGYVP++   L D++DEE +E  L  HSEKLA+ +GL+++   + 
Sbjct: 513 EIYSFLDEMTTKLKSAGYVPELGELLHDIDDEEDKETALSVHSEKLAIAFGLMNTANGTP 572

Query: 673 IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           IRIVKNLRVC DCH   K +SKVY R I++RDRTR+HH++DG+CSCKDYW
Sbjct: 573 IRIVKNLRVCGDCHQATKFISKVYNRVIIVRDRTRYHHFEDGICSCKDYW 622



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 132/470 (28%), Positives = 220/470 (46%), Gaps = 77/470 (16%)

Query: 19  ISSCSSLTHMKQTHAQILKLSH-SHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI 77
           I SC S+  +KQTHAQ++  +  SH    + LLKL            +SL YA  +F QI
Sbjct: 23  IDSCKSMQQIKQTHAQLITTALISHPVSANKLLKL---------AACASLSYAHKLFDQI 73

Query: 78  PAPPSRVSNKFIRAISWS-HRPKHALKVFLKMLNE-GLTIDRFSFPPILKAIARAEGLLE 135
           P P   + N  I+A S S H   ++L VF  +  + GL  +R+SF     A     G+ E
Sbjct: 74  PQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQE 133

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD------------------------- 170
           G QV     K+G  ++ FV   L+GMYG  G + +                         
Sbjct: 134 GEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVG 193

Query: 171 ------ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
                 A+ +FD M  RD+V WS +I GY Q G F E L+ F +M     +P+E  L   
Sbjct: 194 SGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSA 253

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L+ACS    L  G+ +H +I    + ++  L +++I MYA CG ++ A            
Sbjct: 254 LAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESA------------ 301

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
                             +R+ F+  V++ +  W+AMI G+A +  P EA+ +F +M+V 
Sbjct: 302 ------------------SRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVE 343

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQ-RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
            + P+KVT +++++AC+H  ++++ +    L +   A   ++     ++D+ ++ G L+ 
Sbjct: 344 KISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKE 403

Query: 404 AREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
           A ++   M    +V  W +++NA  I+ D          +K   +DPN +
Sbjct: 404 AEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIK--GMDPNHI 451


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/633 (35%), Positives = 357/633 (56%), Gaps = 45/633 (7%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL+ F  ML  G+   + +   IL A +    + +G  +H      GF S+  V   ++ 
Sbjct: 231 ALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMT 290

Query: 161 MYGACGKILDARLMFDKM--SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           MYG CG + +AR +FD M  + RD+V W++M+  Y  N    + + L++ M++     D+
Sbjct: 291 MYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQL---RADK 347

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           +    +LSACS A ++  G  +H+ I+++                               
Sbjct: 348 VTYVSLLSACSSAEDVGLGRVLHKQIVNDE------------------------------ 377

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
            L KN++V  A+VS Y++ G   +AR +FD+M ++ +I W+ +IS Y       EA  LF
Sbjct: 378 -LEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLF 436

Query: 339 NEM-------QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
            +M           +KPD +  +++++ACA +  L+Q + +           D  V  A+
Sbjct: 437 QQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAV 496

Query: 392 IDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           +++Y KCG +E  R +F+ +  R +V  W +MI  +A  G +  AL  F +M+ E + P+
Sbjct: 497 VNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPD 556

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEY-NIPPKYEHYGCMVDLFGRANLLREALEL 509
             +F+ +L ACSH GL D+G+  F SMT EY N+    +H+GC+ DL GR   L+EA E 
Sbjct: 557 SFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEF 616

Query: 510 VETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW 569
           +E +P  P+ V W SL+AACR H +++ A+  A +LL+L+P      V LSNIYA+ ++W
Sbjct: 617 LEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKW 676

Query: 570 QDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPA 629
             V ++RK M E+G+ KER  S IE+   +++F T D +H +  +I E+L ++ S++K  
Sbjct: 677 HAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKEC 736

Query: 630 GYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFI 689
           GYVPD    L  ++++EK  ++  HSE+LA+  GLIS+   + +R+ KNLRVC DCH   
Sbjct: 737 GYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTAT 796

Query: 690 KLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KL+SK+  R+IV+RD TRFH +KDG CSC+DYW
Sbjct: 797 KLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 217/448 (48%), Gaps = 41/448 (9%)

Query: 88  FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
            + A + S + K  L+   +M  +G+  D  +F   L +    E L +G+++H +     
Sbjct: 116 LVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSR 175

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMS-YRDIVPWSVMIDGYFQNGLFDEVLNLF 206
              DP V   L+ MY  CG +  A+ +F KM   R+++ WS+M   +  +G   E L  F
Sbjct: 176 LEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHF 235

Query: 207 EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
             M +  ++  +  +  ILSACS    +  G  +H  I  +    +  + + ++TMY  C
Sbjct: 236 RFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRC 295

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
           G ++ A+ +FD +                            D+ + +D++ W+ M+S Y 
Sbjct: 296 GAVEEARKVFDAM----------------------------DEAL-RDVVSWNIMLSAYV 326

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
            N+  ++A++L+  MQ   ++ DKVT +S++SAC+    +   + +H  I  +    ++ 
Sbjct: 327 HNDRGKDAIQLYQRMQ---LRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVI 383

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM---- 442
           V NA++ MYAKCGS   AR VF++M +R++ISWT++I+A+        A   F +M    
Sbjct: 384 VGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELE 443

Query: 443 ---KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499
                + + P+ + F+ +L AC+    +++G+ + +       +         +V+L+G+
Sbjct: 444 KNGSSQRVKPDALAFVTILNACADVSALEQGK-MVSEQAASCGLSSDKAVGTAVVNLYGK 502

Query: 500 ANLLREALELVETMPFAPNVVIWGSLMA 527
              + E   + + +   P+V +W +++A
Sbjct: 503 CGEIEEGRRIFDGVCSRPDVQLWNAMIA 530



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 216/449 (48%), Gaps = 38/449 (8%)

Query: 106 LKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF-GSDPFVQTGLVGMYGA 164
           L +  + +  +  ++  +L+  ARA+ L EG ++H L  K      +  +   +V MY  
Sbjct: 32  LDLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAH 91

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
           C    DA+  FD +  R++  W+ ++  +  +G   E L   E M+   V PD +     
Sbjct: 92  CDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITA 151

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L +C    +L  G  +H+ ++D+ + +D  + + L+ MY  CG +  AK +F K      
Sbjct: 152 LGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAK------ 205

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
                          +E  R         ++I WS M   +A + +  EAL+ F  M + 
Sbjct: 206 ---------------MERTR---------NVISWSIMAGAHALHGNVWEALRHFRFMLLL 241

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
           G+K  K  M++++SAC+   ++   + IH  I  + F  +L V NA++ MY +CG++E A
Sbjct: 242 GIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEA 301

Query: 405 REVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
           R+VF+ M    R+V+SW  M++A+  +   ++A+  + +M+   +  + VT++ +L ACS
Sbjct: 302 RKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQ---LRADKVTYVSLLSACS 358

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
            A  V  GR +   + N+  +         +V ++ +     EA  + + M    +++ W
Sbjct: 359 SAEDVGLGRVLHKQIVND-ELEKNVIVGNALVSMYAKCGSHTEARAVFDKME-QRSIISW 416

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQLDPD 551
            ++++A      +  A    +Q+L+L+ +
Sbjct: 417 TTIISAYVRRRLVAEACHLFQQMLELEKN 445



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/415 (24%), Positives = 186/415 (44%), Gaps = 38/415 (9%)

Query: 208 EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           +++   V  +    +++L  C+RA  L  G  +H   + +N+                  
Sbjct: 33  DLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNL------------------ 74

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
                       L  NL++   +VS Y+      DA+  FD + +++L  W+ +++ +A 
Sbjct: 75  ------------LPGNLILGNHIVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAI 122

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
           +   +E L+    M+  G++PD VT ++ + +C     L    RIH  +  +    D +V
Sbjct: 123 SGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKV 182

Query: 388 NNAIIDMYAKCGSLESAREVFERMRR-RNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
           +NA+++MY KCGSL  A+ VF +M R RNVISW+ M  A A+HG+   AL  F  M    
Sbjct: 183 SNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLG 242

Query: 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
           I       + +L ACS   LV +GR I + +        +      ++ ++GR   + EA
Sbjct: 243 IKATKSAMVTILSACSSPALVQDGRLIHSCIALS-GFESELLVANAVMTMYGRCGAVEEA 301

Query: 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566
            ++ + M  A   V+  ++M +  VH +         Q +QL  D    + LLS   +  
Sbjct: 302 RKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQLRADKVTYVSLLSACSSA- 360

Query: 567 KRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNE 621
              +DVG  R   K+  I+ +     + + N +        SH +   +++K+ +
Sbjct: 361 ---EDVGLGRVLHKQ--IVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQ 410


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/608 (37%), Positives = 347/608 (57%), Gaps = 32/608 (5%)

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           ++F+F  IL A A    +L G Q+H L  K GF ++ FV T LV MY  C  +  A  +F
Sbjct: 9   NQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVF 68

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE-MKMSNVEPDEMVLSKILSACSRAGNL 234
           D+M  R++V W+ MI G+F N L+D  + +F++ ++   V P+E+ +S +LSAC+  G L
Sbjct: 69  DQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGL 128

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
           ++G  VH  ++   +    ++ ++L+ MY  C   D    LF  V  +++V         
Sbjct: 129 NFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVT-------- 180

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
                                  W+ ++ G+ +N+  +EA   F  M+  G+ PD+ +  
Sbjct: 181 -----------------------WNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFS 217

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           +V+ + A L  L Q   IH  I K  +  ++ +  ++I MYAKCGSL  A +VFE +   
Sbjct: 218 TVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDH 277

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           NVISWT+MI+A+ +HG A   +  F  M  E I+P+ VTF+ VL ACSH G V+EG   F
Sbjct: 278 NVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHF 337

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
            SM   +++ P  EHY CMVDL GRA  L EA   +E+MP  P   +WG+L+ ACR +G 
Sbjct: 338 NSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGN 397

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
           +++   AA++L +++P + G  VLL+N+  +  R ++  E+R+ M   G+ KE  CS I+
Sbjct: 398 LKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWID 457

Query: 595 MNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWH 654
           + N  + F   DRSH  +D+IY+ L ++   +K  GYV +       LE+ E+ + + +H
Sbjct: 458 VKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYH 517

Query: 655 SEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDG 714
           SEKLAL +GL++   DS IRI KNLR C  CH  +KL SK++ REI++RD  RFH + DG
Sbjct: 518 SEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADG 577

Query: 715 VCSCKDYW 722
            CSC DYW
Sbjct: 578 FCSCGDYW 585



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 179/403 (44%), Gaps = 12/403 (2%)

Query: 15  TSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIF 74
           T ++I S S+ T M     Q+  L H H    ++ +   L          + ++ A+ +F
Sbjct: 12  TFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDM---YAKCADMHSAVRVF 68

Query: 75  SQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIARAEGL 133
            Q+P       N  I     ++    A+ VF  +L E   I +  S   +L A A   GL
Sbjct: 69  DQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGL 128

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
             G QVHG+  K G     +V   L+ MY  C    +   +F  +  RD+V W+V++ G+
Sbjct: 129 NFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGF 188

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
            QN  F+E  N F  M+   + PDE   S +L + +    L  G A+H+ II      + 
Sbjct: 189 VQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNM 248

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM--- 310
            +  +LITMYA CG +  A  +F+ +   N++  TAM+S Y   G       +F+ M   
Sbjct: 249 CILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSE 308

Query: 311 -VEKDLICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQ 368
            +E   + +  ++S  +     +E L  FN M ++  M P       ++      G LD+
Sbjct: 309 GIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDE 368

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           A+R   +I+         V  A++    K G+L+  RE  ER+
Sbjct: 369 AKR---FIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERL 408



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 168/357 (47%), Gaps = 40/357 (11%)

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M+ S   P++   S ILSA +    + +G+ +H  I  +    +  + + L+ MYA C  
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           M  A  +FD++  +NLV                                W++MI G+  N
Sbjct: 61  MHSAVRVFDQMPERNLV-------------------------------SWNSMIVGFFHN 89

Query: 329 NHPQEALKLFNE-MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
           N    A+ +F + ++   + P++V++ SV+SACA++G L+  +++H  + K        V
Sbjct: 90  NLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYV 149

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
            N+++DMY KC   +   ++F+ +  R+V++W  ++  F  +     A  +F  M+ E I
Sbjct: 150 MNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGI 209

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            P+  +F  VL++ +    + +G  I   +  +          G ++ ++ +   L +A 
Sbjct: 210 LPDEASFSTVLHSSASLAALHQGTAIHDQII-KLGYVKNMCILGSLITMYAKCGSLVDAY 268

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHG----EIELAEFAAKQLLQLDPDHDGALVLLS 560
           ++ E +    NV+ W ++++A ++HG     IEL E    +   ++P H   + +LS
Sbjct: 269 QVFEGIE-DHNVISWTAMISAYQLHGCANQVIELFEHMLSE--GIEPSHVTFVCVLS 322


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/593 (39%), Positives = 337/593 (56%), Gaps = 45/593 (7%)

Query: 57  FSLPTTTPSSLYYALS----------IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFL 106
           F  P  +   LYY+LS          +F QI  P     N   RA S S  P   + ++ 
Sbjct: 57  FRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYN 116

Query: 107 KMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACG 166
            ML  G   D +SFP +LKA AR   L +G ++H    KLG   D FVQ  L+  + +CG
Sbjct: 117 LMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCG 176

Query: 167 KILDARLMFDKMS--YRDIVPWSVMIDGYFQNGLFDEVLNLFEE-MKMSNVEPDEMVLSK 223
            +  AR +FD +    RD+V W+ MI GY Q+  ++  L +F E +   ++ PDE+ L  
Sbjct: 177 AVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVS 236

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
            LS C R G L  G+ +H     +   LD  + S+LI MY+ CG ++ A+ +FD++  +N
Sbjct: 237 ALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRN 296

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
            V  T+M++GY+                + DL                +EA++LF EMQ+
Sbjct: 297 TVCWTSMIAGYA----------------QSDLF---------------KEAIELFREMQI 325

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
            G   D  T+  V+SAC H G L Q + IHLY ++N+   DL   NA+I MY+KCG ++ 
Sbjct: 326 GGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQK 385

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYACS 462
           A E+F  + + ++ SW+++I+  A++G++  AL  F++M+  S I PN +TF+GVL AC+
Sbjct: 386 ALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACN 445

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
           H G VD+G   F +MT  YN+ P  EHYGCMVDL GRANLL EA + + T+P  P+VVIW
Sbjct: 446 HGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIW 505

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582
            SL+ ACR HG IELAEFAAKQ+ +L+P   GA VLLSN+YA   RW DV  +RK M  +
Sbjct: 506 RSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQ 565

Query: 583 GILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
            I K+  CS +E++  V+E   ADRSH +   IYE +  +   L+  G+ P I
Sbjct: 566 RIKKQPGCSFVEIDGLVHELFVADRSHPEMGAIYETMISINKALQSKGFDPGI 618



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 127/464 (27%), Positives = 219/464 (47%), Gaps = 67/464 (14%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           L   T P        + +C+ L+ +   ++ H+  LKL       +  +   L+++FS  
Sbjct: 119 LRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVH---LDVFVQNALISAFS-- 173

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVS--NKFIRAISWSHRPKHALKVFLKMLNEG-LTIDR 117
             +  ++  A ++F  +PA    V   N  I     SHR + ALKVF ++L +G L+ D 
Sbjct: 174 --SCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDE 231

Query: 118 FSFPPILKAIARAEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
            +    L    R  GLL+ G ++HGL T  GF  D FV + L+ MY  CG+I DAR +FD
Sbjct: 232 VTLVSALSVCGRL-GLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFD 290

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
           ++ +R+ V W+ MI GY Q+ LF E + LF EM++     D   ++ +LSAC   G L+ 
Sbjct: 291 RIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQ 350

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G  +H +   N++ +D + ++ LI MY+ CG +  A  +F  +   ++   +A++SG   
Sbjct: 351 GRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISG--- 407

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ-VCGMKPDKVTMLS 355
                                        A N    +AL LF++M+ +  ++P+++T L 
Sbjct: 408 ----------------------------LAMNGESDKALHLFSQMEMISDIRPNEITFLG 439

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN---------AIIDMYAKCGSLESARE 406
           V+ AC H G +D+     LY     F    ++ N          ++D+  +   L  A +
Sbjct: 440 VLCACNHGGFVDKG----LYY----FNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEK 491

Query: 407 VFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449
               +  + +V+ W S++ A   HG+    L  F   + E ++P
Sbjct: 492 FIRTLPIQPDVVIWRSLLFACRNHGNIE--LAEFAAKQIEELEP 533


>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/610 (37%), Positives = 365/610 (59%), Gaps = 16/610 (2%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS--SLYYALSIFSQ 76
           + SC S+ H+ Q HA+I ++    +          LT   L  T PS  S+ YA  +   
Sbjct: 23  LQSCESMAHLTQIHAKIFRVGLQDNMDT-------LTKIVLFCTDPSRGSIRYAERVLGF 75

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
           + +P   + N  I+A++     +  L +F ++  +GL  D F+ PP+ KA+     ++EG
Sbjct: 76  VQSPCLVMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEG 135

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
            +VHG   K GF  D  V   ++GMYGA GK+  A+ +FD++  RD+V W+V+I  Y  +
Sbjct: 136 EKVHGYVVKSGF--DACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGH 193

Query: 197 GLFDEVLNLFEEMKM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
             F++ + +F  M+  SN++ DE  +   LSACS   N   GE +H ++ D  + +   +
Sbjct: 194 RKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHRYV-DAELEMTTKI 252

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            + L+ MY  CGC+D A+ +FD++  KN++  T+MVSGY+  G +++AR +F++   +D+
Sbjct: 253 GNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDI 312

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + W+AMI+GY + N   EALKLF +MQ+  ++PD   +++++  CA  G L+Q + +H Y
Sbjct: 313 VLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGY 372

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
           I +N+   D  V  A++D+YAKCG +E A EVF  M+ R+  SWTS+I   A++G    A
Sbjct: 373 IHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSKA 432

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
           L FF++M++    P+ +TFIGVL AC+H GLV+EGR  F SMT  Y I PK EHY C++D
Sbjct: 433 LDFFSQMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLID 492

Query: 496 LFGRANLLREALELVETMPFAPN---VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           L  RA LL EA  L+E +P   +   V ++ SL++ACR +G ++++E   ++L +++   
Sbjct: 493 LLCRAGLLDEAELLLEMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERVEVKD 552

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
                LL+++YA   RW+DV  +R+ MKE GI K   CS IE+N  ++EF+    SH + 
Sbjct: 553 SSVHTLLASVYASANRWEDVTTVRRKMKELGIRKFPGCSSIEVNGVLHEFMVGGPSHMEM 612

Query: 613 DQIYEKLNEV 622
           D I+  L +V
Sbjct: 613 DDIHSVLGQV 622


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/477 (42%), Positives = 320/477 (67%), Gaps = 4/477 (0%)

Query: 250 ALDAH--LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
             D H  ++++LI  Y  CG +  A+ +FD+++ K+++  T++V  Y+R+G +  A  +F
Sbjct: 172 GFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVF 231

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
            +   KD++ W+AM++GYA+N  P +AL++F+ M   GM  D+V++   ISACA LG L 
Sbjct: 232 GRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALR 291

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           +A  +    ++  FG ++ V + ++DMYAKCG ++ A +VF  M+ +NV +++SMI   A
Sbjct: 292 RAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLA 351

Query: 428 IHGDARNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
            HG A  A+  F +M + + ++PN VTFIGVL ACSHAG+V EGR  FA M ++Y I P 
Sbjct: 352 SHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPS 411

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            +HY CMVDL GRA L+ EAL+LV +M   P+  +WG+L+ ACR+HG+ E+A+  A+ L 
Sbjct: 412 ADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLF 471

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE-MNNEVYEFLTA 605
           +L+P+  G  VLLSNI A   +W++V ++R  M+++ + K+ A S  E  +  V++F   
Sbjct: 472 KLEPESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAG 531

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           D +H +T +I + L E++++LK  GYVP + S + D+ DEEK  +++ HSEKLAL +GL+
Sbjct: 532 DNAHPRTHEIKKALLELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLL 591

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +      IRI+KNLR+C+DCH F++LVS+V + EI++RD  RFHH+K+G CSC  +W
Sbjct: 592 TLGSGCTIRIIKNLRICDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 113/471 (23%), Positives = 203/471 (43%), Gaps = 72/471 (15%)

Query: 18  AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI 77
           A+SS  SL H++  HA  ++L     S   LL +LL    +LP    + L YAL++FS +
Sbjct: 39  AVSSSPSLPHLRHLHALAVRLPLPATSLPFLLSRLLRRLAALPPPPHAPLPYALNVFSAV 98

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKML---NEGLTIDRFSFPPILKAIARAEGLL 134
             P   ++   +R    +  P    +VF  +       L    F+F  + K+   +  L 
Sbjct: 99  SPPDPFLAAALLRFAFLTQPPLLPFRVFSHLRRAHGAELPFLPFAFSTLAKSATASRSLP 158

Query: 135 EGMQVHGLGTKLG-FGSDPFVQTGLVGMYGACGKILDARLMFDKM--------------- 178
                H +   +G F    FV+  L+G Y ACG +  AR +FD+M               
Sbjct: 159 AAAAAHAVSVLVGGFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAY 218

Query: 179 ----------------SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLS 222
                             +D+V W+ M+ GY QN +  + L +F+ M    +  DE+ L+
Sbjct: 219 TRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLT 278

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
             +SAC++ G L     V E         +  + S L+ MYA CG +D A  +F  +  K
Sbjct: 279 GAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEK 338

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           N+   ++M++G +  G+  +A  +F +MV +                             
Sbjct: 339 NVYTYSSMIAGLASHGRASEAIALFKEMVNR----------------------------- 369

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGS 400
              ++P+ VT + V++AC+H G++ +  R +    K+ +G     ++   ++D+  + G 
Sbjct: 370 -ANVEPNHVTFIGVLTACSHAGMVGEG-RYYFAQMKDKYGIMPSADHYACMVDLLGRAGL 427

Query: 401 LESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIF---FNKMKDESI 447
           ++ A ++   M    +   W +++ A  IHG +  A +      K++ ESI
Sbjct: 428 VDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEPESI 478


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/649 (34%), Positives = 371/649 (57%), Gaps = 34/649 (5%)

Query: 75  SQIPAPPSRVSNKFIRAISWSHRPKHALKVF-LKMLNEGLTIDRFSFPPILKAIARAEGL 133
           +Q+  P S +  + I  + +  R   AL++F +  LN    +D  ++  ++ A    + +
Sbjct: 89  TQLRKPSSELCGQ-IEKLVFFKRYHEALELFEILELNGAYDMDSETYDALVSACIGLKSI 147

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
               +V       G   D +++  ++ M+  CG ++DAR +FD+M  ++I+ W+ +I G 
Sbjct: 148 RGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGL 207

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
              G + E   LF  M     +    +   ++ A +  G +  G  +H   +   V  D 
Sbjct: 208 VDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGD- 266

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
                   ++  C  +DM                      YS+ G +EDA+ +FDQM EK
Sbjct: 267 --------VFVACALIDM----------------------YSKCGSIEDAQCVFDQMPEK 296

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
             + W+++I+GYA + + +EAL ++ EM+  G+K D  T   +I  CA L  L+ A++ H
Sbjct: 297 TTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAH 356

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
             + ++ FG D+  N A++D+Y+K G +E A+ VF+ M  +NVISW ++I  +  HG   
Sbjct: 357 AGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGV 416

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
            A+  F +M  E + PN VTF+ VL ACS++GL D G EIF SM+ ++ I P+  HY CM
Sbjct: 417 EAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACM 476

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553
           ++L GR  LL EA  L++  PF P V +W +L+ ACRVH   EL +FAA++L  + P+  
Sbjct: 477 IELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKL 536

Query: 554 GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTD 613
              V+L NIY +  R ++   + +++K RG+    ACS IE+  + Y F++ D+ H Q+ 
Sbjct: 537 SNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSK 596

Query: 614 QIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCI 673
           +IY+KL+E++ E+   GYVP     L D++++E+R V+L+HSEKLA+ +GLI++   + +
Sbjct: 597 EIYQKLDELMLEISKHGYVPQDKFLLPDVDEQEER-VLLYHSEKLAIAFGLINTSDWTPL 655

Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +IV++ R+C DCH+ IKL++ V  REIV+RD +RFHH+KDG CSC DYW
Sbjct: 656 QIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 1/222 (0%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
            S+  A  +F Q+P   +   N  I   +     + AL ++ +M + G+ ID F+F  I+
Sbjct: 281 GSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIII 340

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           +  AR   L    Q H    + GFG D    T LV +Y   G+I DA+ +FD M +++++
Sbjct: 341 RICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVI 400

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ +I GY  +G   E + +FE M    + P+ +    +LSACS +G    G  + E +
Sbjct: 401 SWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESM 460

Query: 245 I-DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
             D+ +   A   + +I +    G +D A  L      K  V
Sbjct: 461 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTV 502


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/588 (38%), Positives = 350/588 (59%), Gaps = 17/588 (2%)

Query: 143 GTKLGFGSDPFVQTG-----LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           G +  F S P   T      L G   A G++ DAR +FD++   D V ++ ++  +F +G
Sbjct: 84  GAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASG 143

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH-EFIIDNNVALDAHLQ 256
             D    LF  M + +V    +  + ++S  S++G +   +AV     + N+V+ +A   
Sbjct: 144 DADGARRLFASMPVRDV----VSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNA--- 196

Query: 257 STLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
             +++ +A    M  A+  F     K + V+ TAMVSGY   G V  A   F+ M  ++L
Sbjct: 197 --MVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNL 254

Query: 316 ICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           + W+A+++GY +N+H  +AL+LF  M +   ++P+  T+ SV+  C++L  L   ++IH 
Sbjct: 255 VSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQ 314

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           +  K     +L V  +++ MY KCG L SA ++F  M  R+V++W +MI+ +A HGD + 
Sbjct: 315 WCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKE 374

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           A+  F +MKDE ++PN +TF+ VL AC H GL D G   F  M   Y I P+ +HY CMV
Sbjct: 375 AINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMV 434

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DL  RA  L  A++L+ +MPF P+   +G+L+AACRV+  +E AE AA +L++ DP   G
Sbjct: 435 DLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAG 494

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
           A V L+NIYA   +W DV  +R+ MK+  ++K    S IE+   ++EF + DR H Q   
Sbjct: 495 AYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYL 554

Query: 615 IYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIR 674
           I+EKL ++   +K  GYVPD+   L D+++  K ++++ HSEKLA+ +GLIS+     +R
Sbjct: 555 IHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLR 614

Query: 675 IVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           I KNLRVC DCHN  K++SK+  REI++RD TRFHH++ G CSC DYW
Sbjct: 615 IFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/649 (34%), Positives = 370/649 (57%), Gaps = 34/649 (5%)

Query: 75  SQIPAPPSRVSNKFIRAISWSHRPKHALKVF-LKMLNEGLTIDRFSFPPILKAIARAEGL 133
           +Q+  P S +  + I  + +  R   AL++F +  LN    +D  ++  ++ A    + +
Sbjct: 89  TQLRKPSSELCGQ-IEKLVFFKRYHEALELFEILELNGAYDMDSETYDALVSACIGLKSI 147

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
               +V       G   D +++  ++ M+  CG ++DAR +FD+M  ++I+ W+ +I G 
Sbjct: 148 RGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGL 207

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
              G + E   LF  M     +    +   ++ A +  G +  G  +H   +   V  D 
Sbjct: 208 VDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGD- 266

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
                   ++  C  +DM                      YS+ G +EDA+ +FDQM EK
Sbjct: 267 --------VFVACALIDM----------------------YSKCGSIEDAQCVFDQMPEK 296

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
             + W+++I+GYA + + +EAL ++ EM+  G+K D  T   +I  CA L  L+ A++ H
Sbjct: 297 TTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAH 356

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
             + ++ FG D+  N A++D+Y+K G +E A+ VF+ M  +NVISW ++I  +  HG   
Sbjct: 357 AGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGV 416

Query: 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493
            A+  F +M  E + PN VTF+ VL ACS++GL D G EIF SM+ ++ I P+  HY CM
Sbjct: 417 EAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACM 476

Query: 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553
           ++L GR  LL EA  L++  PF P V +W +L+ ACRVH   EL +FAA++L  + P+  
Sbjct: 477 IELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKL 536

Query: 554 GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTD 613
              V+L NIY    R ++   + +++K RG+    ACS IE+  + Y F++ D+ H Q+ 
Sbjct: 537 SNYVVLLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSK 596

Query: 614 QIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCI 673
           +IY+KL+E++ E+   GYVP     L D++++E+R V+L+HSEKLA+ +GLI++   + +
Sbjct: 597 EIYQKLDELMLEISKHGYVPQXKFLLPDVDEQEER-VLLYHSEKLAIAFGLINTSDWTPL 655

Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +IV++ R+C DCH+ IKL++ V  REIV+RD +RFHH+KDG CSC DYW
Sbjct: 656 QIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 1/217 (0%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F Q+P   +   N  I   +     + AL ++ +M + G+ ID F+F  I++  AR
Sbjct: 286 AQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICAR 345

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L    Q H    + GFG D    T LV +Y   G+I DA+ +FD M +++++ W+ +
Sbjct: 346 LASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNAL 405

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII-DNN 248
           I GY  +G   E + +FE M    + P+ +    +LSACS +G    G  + E +  D+ 
Sbjct: 406 IAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHK 465

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
           +   A   + +I +    G +D A  L      K  V
Sbjct: 466 IKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTV 502


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 246/734 (33%), Positives = 381/734 (51%), Gaps = 66/734 (8%)

Query: 8   TKPLTLPTSTAISS--CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           T P  L   +A++   C    H    HA +     +    ++ LL + +    LP     
Sbjct: 12  TFPFALKACSALADHHCGRAIHRHAIHAGL----QADLFVSTALLDMYVKCACLPD---- 63

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAIS----WSHRPKHALKVFLKMLNEGLTIDRFSFP 121
               A  IF+ +PA      N  +   +    + H   H L + ++M    L  +  +  
Sbjct: 64  ----AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQM--HRLRPNASTLV 117

Query: 122 PILKAIARAEGLLEGMQVHGL----------GTKLGFGSDPFVQTGLVGMYGACGKILDA 171
            +L  +A+   L +G  VH             +K        + T L+ MY  CG +L A
Sbjct: 118 ALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 177

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM---KMSNVEPDEMVLSKILSAC 228
           R +FD M  R+ V WS +I G+       +   LF+ M    +  + P    ++  L AC
Sbjct: 178 RRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRAC 235

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
           +   +L  GE +H  +  + V  D    ++L++MYA                        
Sbjct: 236 ASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYA------------------------ 271

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
                  +AG ++ A  +FD+M  KD + +SA++SGY +N   +EA  +F +MQ C ++P
Sbjct: 272 -------KAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEP 324

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
           D  TM+S+I AC+HL  L   +  H  +       +  + NA+IDMYAKCG ++ +R+VF
Sbjct: 325 DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVF 384

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
             M  R+++SW +MI  + IHG  + A   F +M +    P+GVTFI +L ACSH+GLV 
Sbjct: 385 NMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVI 444

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           EG+  F  M + Y + P+ EHY CMVDL  R   L EA E +++MP   +V +W +L+ A
Sbjct: 445 EGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGA 504

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           CRV+  I+L +  ++ + +L P+  G  VLLSNIY+   R+ +  E+R   K +G  K  
Sbjct: 505 CRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSP 564

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
            CS IE+N  ++ F+  D+SH Q+ +IY +L+ ++  +K  GY PD    L DLE+EEK 
Sbjct: 565 GCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKE 624

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
           + ++ HSEKLA+ YG++S  +D  I + KNLRVC DCH  IK +S V  R I++RD  RF
Sbjct: 625 KALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRF 684

Query: 709 HHYKDGVCSCKDYW 722
           HH+K+G CSC D+W
Sbjct: 685 HHFKNGQCSCGDFW 698



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 148/585 (25%), Positives = 266/585 (45%), Gaps = 72/585 (12%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           ML   +  + ++FP  LKA +       G  +H      G  +D FV T L+ MY  C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN--LFEEMKMSNVEPDEMVLSKIL 225
           + DA  +F  M  RD+V W+ M+ GY  +G++   +   L  +M+M  + P+   L  +L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
              ++ G L+ G +VH + I   +  + + +S L                 D VLL    
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLT----------------DGVLL---- 160

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM---Q 342
             TA++  Y++ G +  AR +FD M  ++ + WSA+I G+   +   +A  LF  M    
Sbjct: 161 -GTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG 219

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
           +C + P  +   S + ACA L  L   +++H  + K+    DL   N+++ MYAK G ++
Sbjct: 220 LCFLSPTSIA--SALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLID 277

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            A  +F+ M  ++ +S++++++ +  +G A  A + F KM+  +++P+  T + ++ ACS
Sbjct: 278 QAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACS 337

Query: 463 HAGLVDEGR-----EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           H   +  GR      I   + +E +I         ++D++ +   +  + ++   MP + 
Sbjct: 338 HLAALQHGRCSHGSVIIRGLASETSI------CNALIDMYAKCGRIDLSRQVFNMMP-SR 390

Query: 518 NVVIWGSLMAACRVH--GEIELAEFAAKQLLQLDPDHDGALVLL-----SNIYAKDKRWQ 570
           ++V W +++A   +H  G+   A F     L   PD    + LL     S +  + K W 
Sbjct: 391 DIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWF 450

Query: 571 DV---GELRKSMKERGILKERACSRIEMNNEVYEF----------------LTADRSHKQ 611
            V   G       E  I      SR    +E YEF                L A R +K 
Sbjct: 451 HVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKN 510

Query: 612 TDQIYEKLNEVISELKPAG-----YVPDIHSALVDLEDEEKREVI 651
            D + +K++ +I EL P G      + +I+SA    ++  +  +I
Sbjct: 511 ID-LGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRII 554


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/622 (35%), Positives = 349/622 (56%), Gaps = 31/622 (4%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL++F  M   G+    F+F  IL   A    LL G QVH L  +     + FV   L+ 
Sbjct: 220 ALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLD 279

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
            Y  C  + D R +FD+M  RD V ++V+I  Y  N     VL LF EM+    +   + 
Sbjct: 280 FYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLP 339

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
            + +LS      ++  G+ +H  ++   +A +  L + LI MY+ C              
Sbjct: 340 YATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKC-------------- 385

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                            G ++ A+  F    EK  I W+A+I+GY +N   +EAL+LF++
Sbjct: 386 -----------------GMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSD 428

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M+  G++PD+ T  S+I A + L ++   +++H Y+ ++ +   +   + ++DMYAKCG 
Sbjct: 429 MRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGC 488

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           L+ A   F+ M  RN ISW ++I+A+A +G+A+NA+  F  M     +P+ VTF+ VL A
Sbjct: 489 LDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAA 548

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSH GL DE  + F  M ++Y+I P  EHY C++D  GR     +  +++  MPF  + +
Sbjct: 549 CSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPI 608

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           IW S++ +CR+HG  ELA  AA +L  ++P      V+LSNIYA+  +W+D   ++K M+
Sbjct: 609 IWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMR 668

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           +RG+ KE   S +E+  ++Y F + D +    D+I ++L+ +  E+   GY PDI  AL 
Sbjct: 669 DRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALH 728

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
            ++ E K E + +HSE+LA+ + L+++   + IRI+KNL  C DCH  IK++SK+  R+I
Sbjct: 729 MVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDI 788

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           ++RD  RFHH+KDGVCSC DYW
Sbjct: 789 IVRDSRRFHHFKDGVCSCGDYW 810



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 172/391 (43%), Gaps = 34/391 (8%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F ++P   +   N  I A +W+      L++F +M   G       +  +L        
Sbjct: 293 LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPD 352

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           +  G Q+H     LG  S+  +   L+ MY  CG +  A+  F   S +  + W+ +I G
Sbjct: 353 VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITG 412

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y QNG  +E L LF +M+ + + PD    S I+ A S    +  G  +H ++I +     
Sbjct: 413 YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS 472

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
               S L+ MYA CGC+D A   FD++  +N +   A++S Y+  G+ ++          
Sbjct: 473 VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKN---------- 522

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR- 371
                                A+K+F  M  CG  PD VT LSV++AC+H G+ D+  + 
Sbjct: 523 ---------------------AIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKY 561

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHG 430
            HL   + +          +ID   + G     +++   M  + + I WTS++++  IHG
Sbjct: 562 FHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHG 621

Query: 431 DARNALIFFNKMKD-ESIDPNGVTFIGVLYA 460
           +   A +  +K+   E  D      +  +YA
Sbjct: 622 NQELARVAADKLFGMEPTDATPYVILSNIYA 652



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 144/322 (44%), Gaps = 40/322 (12%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           ++  Y + G +  A+ +F    +R+   W++M+  +   G   + L+LF  M    V PD
Sbjct: 80  ILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPD 139

Query: 218 EMVLSKILS--ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
            + ++ +L+   C+         ++H F I     LD H+                    
Sbjct: 140 RVTVTTVLNLPGCTV-------PSLHPFAI--KFGLDTHV-------------------- 170

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
                     V   ++  Y + G +  AR +F +M +KD + ++AM+ G ++     +AL
Sbjct: 171 ---------FVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQAL 221

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           +LF  M+  G+     T  S+++  A +  L    ++H  + ++    ++ VNN+++D Y
Sbjct: 222 QLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFY 281

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           +KC  L+  R +F+ M  R+ +S+  +I A+A +  A   L  F +M+    D   + + 
Sbjct: 282 SKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYA 341

Query: 456 GVLYACSHAGLVDEGREIFASM 477
            +L        V  G++I A +
Sbjct: 342 TMLSVAGSLPDVHIGKQIHAQL 363


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/661 (34%), Positives = 358/661 (54%), Gaps = 55/661 (8%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  +  +  S R   A++V   M+  G+  D  +F   L A ++ E L  G ++H    K
Sbjct: 240 NTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLK 299

Query: 146 -LGFGSDPFVQTGLVGMYGACGKILDARLMFDKM--SYRDIVPWSVMIDGYFQNGLFDEV 202
                ++ FV + LV MY +  ++  AR +FD +   +R +  W+ M+ GY Q G+ +E 
Sbjct: 300 DSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEA 359

Query: 203 LNLFEEMKM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
           L LF  M+  + V P E  ++ +L AC+R+   +  EAVH +++   +A +  +Q+ L+ 
Sbjct: 360 LELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMD 419

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
           +YA                               R G +E AR IF  +  +D++ W+ +
Sbjct: 420 LYA-------------------------------RLGDMEAARWIFAAIEPRDVVSWNTL 448

Query: 322 ISGYAENNHPQEALKLFNEMQVCG------------------MKPDKVTMLSVISACAHL 363
           I+G     H  +A +L  EMQ  G                  + P+ VT+++++  CA L
Sbjct: 449 ITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAML 508

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
               + + IH Y  ++A   D+ V +A++DMYAKCG L  +R VF+R+ +RNVI+W  +I
Sbjct: 509 AAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLI 568

Query: 424 NAFAIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
            A+ +HG    A+  F++M       PN VTFI  L ACSH+G+VD G E+F SM   + 
Sbjct: 569 MAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHG 628

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFA 541
           + P  + + C VD+ GRA  L EA  ++ +M P    V  W S + ACR+H  + L E A
Sbjct: 629 VQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIA 688

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
           A++L QL+PD     VLL NIY+    W+   E+R  M++RG+ KE  CS IE++  ++ 
Sbjct: 689 AERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHR 748

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           F+  + +H ++  ++  ++ +   ++  GY PD  S L D+E+ EK  ++ +HSEKLA+ 
Sbjct: 749 FMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAIA 808

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           +GL+ +   + IR+ KNLRVC DCH   K +S++  REIV+RD  RFHH+ DG CSC DY
Sbjct: 809 FGLLRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDY 868

Query: 722 W 722
           W
Sbjct: 869 W 869



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 139/550 (25%), Positives = 245/550 (44%), Gaps = 68/550 (12%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P + + ++  SL  ++  H   L+     H     +   LLT+++        L  AL++
Sbjct: 64  PAAKSAAALRSLIAVRSIHGAALR-RDLLHGFTPAVANALLTAYA----RCGDLTAALAL 118

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR-AEG 132
           F+ +P+  +   N  I A+    R   AL     ML EG  +  F+   +L A +  AE 
Sbjct: 119 FNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAED 178

Query: 133 LLEGMQVHGLGTKLGF--GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD-----IVP 185
           L  G + H    K GF  G + F    L+ MY   G + DA+++F  +   D     +V 
Sbjct: 179 LRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVT 238

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ M+    Q+G   E + +  +M    V PD +  +  L ACS+   LS G  +H +++
Sbjct: 239 WNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVL 298

Query: 246 -DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL--LKNLVVSTAMVSGYSRAGQVED 302
            D+++A ++ + S L+ MYA+   + +A+ +FD V    + L +  AMV GY++AG  E 
Sbjct: 299 KDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDE- 357

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPDKVTMLSVISACA 361
                                         EAL+LF  M+   G+ P + T+  V+ ACA
Sbjct: 358 ------------------------------EALELFARMEAEAGVVPSETTIAGVLPACA 387

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
                   + +H Y+ K     +  V NA++D+YA+ G +E+AR +F  +  R+V+SW +
Sbjct: 388 RSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNT 447

Query: 422 MINAFAIHGDARNALIFFNKMK------------------DESIDPNGVTFIGVLYACSH 463
           +I    + G   +A     +M+                  +E + PN VT + +L  C+ 
Sbjct: 448 LITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAM 507

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
                +G+EI       + +         +VD++ +   L  +  + + +P   NV+ W 
Sbjct: 508 LAAPAKGKEIH-GYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLP-KRNVITWN 565

Query: 524 SLMAACRVHG 533
            L+ A  +HG
Sbjct: 566 VLIMAYGMHG 575



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 192/445 (43%), Gaps = 43/445 (9%)

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTK--LGFGSDPFVQTGLVGMYGACGKILDAR 172
           +D F+ PP  K+ A    L+    +HG   +  L  G  P V   L+  Y  CG +  A 
Sbjct: 57  LDHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAAL 116

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR-A 231
            +F+ M  RD V ++ +I        +   L+   +M +         L  +L ACS  A
Sbjct: 117 ALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLA 176

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
            +L  G   H F + N                          G  D           A++
Sbjct: 177 EDLRLGREAHAFALKN--------------------------GFLDG---DERFAFNALL 207

Query: 292 SGYSRAGQVEDARLIFDQMVEKD-----LICWSAMISGYAENNHPQEALKLFNEMQVCGM 346
           S Y+R G V+DA+++F  +   D     ++ W+ M+S   ++    EA+++  +M   G+
Sbjct: 208 SMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGV 267

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA-FGGDLRVNNAIIDMYAKCGSLESAR 405
           +PD +T  S + AC+ L +L   + +H Y+ K++    +  V +A++DMYA    +  AR
Sbjct: 268 RPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVAR 327

Query: 406 EVFERM--RRRNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYACS 462
            VF+ +    R +  W +M+  +A  G    AL  F +M+ E+ + P+  T  GVL AC+
Sbjct: 328 RVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACA 387

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
            +     G+E       +  +         ++DL+ R   + EA   +       +VV W
Sbjct: 388 RSETF-AGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDM-EAARWIFAAIEPRDVVSW 445

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQ 547
            +L+  C V G I  A    +++ Q
Sbjct: 446 NTLITGCVVQGHIHDAFQLVREMQQ 470


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 349/623 (56%), Gaps = 31/623 (4%)

Query: 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
            AL++F  M   G+    F+F  IL   A    LL G QVH L  +     + FV   L+
Sbjct: 219 QALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLL 278

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
             Y  C  + D R +FD+M  RD V ++V+I  Y  N     VL LF EM+    +   +
Sbjct: 279 DFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVL 338

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
             + +LS      ++  G+ +H  ++   +A +  L + LI MY+ C             
Sbjct: 339 PYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKC------------- 385

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
                             G ++ A+  F    EK  I W+A+I+GY +N   +EAL+LF+
Sbjct: 386 ------------------GMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFS 427

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           +M+  G++PD+ T  S+I A + L ++   +++H Y+ ++ +   +   + ++DMYAKCG
Sbjct: 428 DMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCG 487

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
            L+ A   F+ M  RN ISW ++I+A+A +G+A+NA+  F  M     +P+ VTF+ VL 
Sbjct: 488 CLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLA 547

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           ACSH GL DE  + F  M ++Y+I P  EHY C++D  GR     +  +++  MPF  + 
Sbjct: 548 ACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADP 607

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
           +IW S++ +CR+HG  ELA  AA +L  ++P      V+LSNIYA+  +W+D   ++K M
Sbjct: 608 IIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIM 667

Query: 580 KERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
           ++RG+ KE   S +E+  ++Y F + D +    D+I ++L+ +  E+   GY PDI  AL
Sbjct: 668 RDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCAL 727

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
             ++ E K E + +HSE+LA+ + L+++   + IRI+KNL  C DCH  IK++SK+  R+
Sbjct: 728 HMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRD 787

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           I++RD  RFHH+KDGVCSC DYW
Sbjct: 788 IIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 172/391 (43%), Gaps = 34/391 (8%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F ++P   +   N  I A +W+      L++F +M   G       +  +L        
Sbjct: 293 LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPD 352

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           +  G Q+H     LG  S+  +   L+ MY  CG +  A+  F   S +  + W+ +I G
Sbjct: 353 VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITG 412

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y QNG  +E L LF +M+ + + PD    S I+ A S    +  G  +H ++I +     
Sbjct: 413 YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS 472

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
               S L+ MYA CGC+D A   FD++  +N +   A++S Y+  G+ ++          
Sbjct: 473 VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKN---------- 522

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR- 371
                                A+K+F  M  CG  PD VT LSV++AC+H G+ D+  + 
Sbjct: 523 ---------------------AIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKY 561

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHG 430
            HL   + +          +ID   + G     +++   M  + + I WTS++++  IHG
Sbjct: 562 FHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHG 621

Query: 431 DARNALIFFNKMKD-ESIDPNGVTFIGVLYA 460
           +   A +  +K+   E  D      +  +YA
Sbjct: 622 NQELARVAADKLFGMEPTDATPYVILSNIYA 652



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 144/322 (44%), Gaps = 40/322 (12%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           ++  Y + G +  A+ +F    +R+   W++M+  +   G   + L+LF  M    V PD
Sbjct: 80  ILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPD 139

Query: 218 EMVLSKILS--ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
            + ++ +L+   C+         ++H F I     LD H+                    
Sbjct: 140 RVTVTTVLNLPGCTV-------PSLHPFAI--KFGLDTHV-------------------- 170

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
                     V   ++  Y + G +  AR +F +M +KD + ++AM+ G ++     +AL
Sbjct: 171 ---------FVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQAL 221

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           +LF  M+  G+     T  S+++  A +  L    ++H  + ++    ++ VNN+++D Y
Sbjct: 222 QLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFY 281

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           +KC  L+  R +F+ M  R+ +S+  +I A+A +  A   L  F +M+    D   + + 
Sbjct: 282 SKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYA 341

Query: 456 GVLYACSHAGLVDEGREIFASM 477
            +L        V  G++I A +
Sbjct: 342 TMLSVAGSLPDVHIGKQIHAQL 363


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/704 (32%), Positives = 393/704 (55%), Gaps = 44/704 (6%)

Query: 40  HSHHSQNSLLLKLLLTSFSLPTTTP---SSLYYALSIFSQIPAPPSRVSNKF----IRAI 92
           H  H +NSL        F   + TP   S+LY++ +       P   +  K     I   
Sbjct: 17  HQIHRENSLTYPNGFIFFRPSSKTPLVSSNLYHSCATIGTSVLPSETIDCKITDYNIEIC 76

Query: 93  SWSHRPKHALKVFLKMLNEGLTIDR--FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGS 150
            +       L+  ++++N+    D    ++  +L+  A  + + +G ++H +        
Sbjct: 77  RFCELGN--LRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEV 134

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D  + + LV MY  CG + + R +FDK++   +  W+++++GY + G F E L+LF+ M+
Sbjct: 135 DGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMR 194

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
                  E+ + ++ SA                + D     D    +++I+ Y + G  +
Sbjct: 195 -------ELGIRRVESA--------------RKLFDELGDRDVISWNSMISGYVSNGLSE 233

Query: 271 MAKGLFDKVLLKN------------LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
               LF+++LL              L ++  ++  YS++G +  A  +F+ M E+ ++ W
Sbjct: 234 KGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSW 293

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           ++MI+GYA       +++LF+EM+   + P+ +TM  ++ ACA L  L++ Q IH +I +
Sbjct: 294 TSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILR 353

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
           N F  D  V NA++DMY KCG+L  AR +F+ +  ++++SWT MI  + +HG    A+  
Sbjct: 354 NGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAA 413

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           FN+M++  I+P+ V+FI +LYACSH+GL+DEG   F  M N   I PK EHY C+VDL  
Sbjct: 414 FNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLA 473

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558
           RA  L +A + ++ MP  P+  IWG+L+  CR++ +++LAE  A+ + +L+P++ G  VL
Sbjct: 474 RAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVL 533

Query: 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEK 618
           L+NIYA+ ++W++V +LR+ +  RG+ K   CS IE+  +V+ F+T D SH   ++I   
Sbjct: 534 LANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELL 593

Query: 619 LNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKN 678
           L +  + +K  G+ P +  AL+  +D EK   +  HSEK+A+ +G++S      +R+ KN
Sbjct: 594 LKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKN 653

Query: 679 LRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LRVC DCH   K +SK+  R+I++RD  RFHH+KDG CSC+ +W
Sbjct: 654 LRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/726 (32%), Positives = 386/726 (53%), Gaps = 70/726 (9%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           S+   + +F  +P          +   + +      + +F +M  EG+  + F+F  +L 
Sbjct: 150 SVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLS 209

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A+A    L  G +VH    K G  S  FV   L+ MY  CG + DA+ +F+ M  RD+V 
Sbjct: 210 AVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVS 269

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ ++ G   N    E L LF E + +  +  +   + ++  C+    L+    +H  ++
Sbjct: 270 WNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVL 329

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL-LKNLVVSTAMVSGYSRAGQVEDAR 304
            +   L  ++ + L   Y+ CG +  A  +F      +N+V  TA++SG  + G +  A 
Sbjct: 330 KHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAV 389

Query: 305 LIFDQMVEKDLI-----------------------------------CWSAMISGYAENN 329
           ++F +M E  ++                                     +A+++ Y++  
Sbjct: 390 VLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFG 449

Query: 330 HPQEALKLF-------------------------------NEMQVCGMKPDKVTMLSVIS 358
             ++AL +F                               N+M + G+KP++ T+ SVI 
Sbjct: 450 STEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVID 509

Query: 359 ACA--HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           ACA    GV DQ ++ H    K  +   + V++A++ MY++ G+++SA+ VFER   R++
Sbjct: 510 ACACPSAGV-DQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDL 568

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           +SW SMI+ +A HG +  A+  F +M+   I  +GVTF+ V+  C+H GLV EG++ F S
Sbjct: 569 VSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDS 628

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           M  ++ I P  EHY CMVDL+ RA  L E + L+  MPF    ++W +L+ ACRVH  +E
Sbjct: 629 MVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVE 688

Query: 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMN 596
           L +F+A +LL L+P      VLLSNIYA   +W++  E+RK M  R + KE  CS I++ 
Sbjct: 689 LGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIK 748

Query: 597 NEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSE 656
           N+V+ F+  D+SH  +DQIY+KL  +I+ LK  GY P+    L D+ +++K  +++ HSE
Sbjct: 749 NKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSE 808

Query: 657 KLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVC 716
           +LAL +GLI++   + ++IVKNLRVC DCH  +K+VS +  REI++RD +RFHH+  G C
Sbjct: 809 RLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGAC 868

Query: 717 SCKDYW 722
           SC D+W
Sbjct: 869 SCGDFW 874



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 197/433 (45%), Gaps = 43/433 (9%)

Query: 112 GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFG-SDPFVQTGLVGMYGACGKILD 170
           G+ +D  +   +LKA       + G Q+H L  K G    +    T LV MY  CG + +
Sbjct: 94  GVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCE 153

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
              +F+ M  +++V W+ ++ G     +  EV+ LF  M+   + P+    + +LSA + 
Sbjct: 154 GIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVAS 213

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
            G L  G+ VH   +         + ++L+ MYA CG ++                    
Sbjct: 214 QGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVE-------------------- 253

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
                      DA+ +F+ M  +D++ W+ +++G   N    EAL+LF+E +    K  +
Sbjct: 254 -----------DAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQ 302

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
            T  +VI  CA+L  L  A+++H  + K+ F     V  A+ D Y+KCG L  A  +F  
Sbjct: 303 STYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSM 362

Query: 411 MR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
               RNV+SWT++I+    +GD   A++ F++M+++ + PN  T+  +L     A L   
Sbjct: 363 TTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAML----KASLSIL 418

Query: 470 GREIFASM--TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
             +I A +  TN  +IP            FG         +++E      +VV W ++++
Sbjct: 419 PPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQ----KDVVAWSAMLS 474

Query: 528 ACRVHGEIELAEF 540
                G+ E A +
Sbjct: 475 CHAQAGDCEGATY 487



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 168/370 (45%), Gaps = 34/370 (9%)

Query: 171 ARLMFDKMSYRDIVPWS--VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228
           AR   D++  RD    +  V+ D Y + G+  EVL+ F   +   V  D   LS +L AC
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFD-YARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKAC 109

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
               +   GE +H   +                    CG         D+     +   T
Sbjct: 110 RSVPDRVLGEQLHCLCV-------------------KCG--------HDR---GEVSAGT 139

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
           ++V  Y + G V +   +F+ M +K+++ W+++++G A      E + LF  M+  G+ P
Sbjct: 140 SLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWP 199

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
           +  T  SV+SA A  G LD  QR+H    K      + V N++++MYAKCG +E A+ VF
Sbjct: 200 NPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVF 259

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
             M  R+++SW +++    ++     AL  F++ +         T+  V+  C++   + 
Sbjct: 260 NWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLA 319

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
             R++ + +  ++           + D + +   L +AL +      + NVV W ++++ 
Sbjct: 320 LARQLHSCVL-KHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISG 378

Query: 529 CRVHGEIELA 538
           C  +G+I LA
Sbjct: 379 CIQNGDIPLA 388



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 117/243 (48%), Gaps = 9/243 (3%)

Query: 30  QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFI 89
           Q HAQ++K ++ H      +   LL S+S   +T      ALSIF  I        +  +
Sbjct: 421 QIHAQVIKTNYQH---IPFVGTALLASYSKFGSTED----ALSIFKMIEQKDVVAWSAML 473

Query: 90  RAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA-RAEGLLEGMQVHGLGTKLGF 148
              + +   + A  +F KM  +G+  + F+   ++ A A  + G+ +G Q H +  K  +
Sbjct: 474 SCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRY 533

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
                V + LV MY   G I  A+++F++ + RD+V W+ MI GY Q+G   + +  F +
Sbjct: 534 HDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQ 593

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII-DNNVALDAHLQSTLITMYANCG 267
           M+ S ++ D +    ++  C+  G +  G+   + ++ D+ +       + ++ +Y+  G
Sbjct: 594 MEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAG 653

Query: 268 CMD 270
            +D
Sbjct: 654 KLD 656


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/528 (39%), Positives = 324/528 (61%)

Query: 67   LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
            L +A  +F QI AP + + N  IR ++ S  P  A+  + K    G+  D  +FP ILKA
Sbjct: 502  LVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKA 561

Query: 127  IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
             AR   L EG Q+H   TKLG  SD FV   L+ +Y ACG +  AR +FD+M  +D+V W
Sbjct: 562  CARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSW 621

Query: 187  SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
            + +I GY Q   F ++L LF+ M+   V+ D++ + K++SAC+R G+ S  + +  +I D
Sbjct: 622  NSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIED 681

Query: 247  NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
              + +D +L +TL+  +   G +  A+ +F  + ++N+V   AM++ Y++   +  AR I
Sbjct: 682  YCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKI 741

Query: 307  FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
            FDQ+ +KDLI WS+MISGY++ NH  +AL++F +MQ   +KPD + + SV+S+CAHLG L
Sbjct: 742  FDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGAL 801

Query: 367  DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
            D  + +H Y+ +N    D  + N++IDMY KCGS + A +VF+ M+ ++ +SW S+I   
Sbjct: 802  DLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGL 861

Query: 427  AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
            A +G  + +L  F  M  E   PNGVTF+GVL AC++A LV+EG + F SM   Y++ P+
Sbjct: 862  ANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQ 921

Query: 487  YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
             +HYGC+VDL GRA  L +AL  +  MP  P+ V+W  L+ +C  HG++ +AE   K+L 
Sbjct: 922  MKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLN 981

Query: 547  QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
            +L+P + G   LLSN YA   RW +   +R+ M +  + K   CS +E
Sbjct: 982  ELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 1029



 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 143/419 (34%), Positives = 242/419 (57%), Gaps = 6/419 (1%)

Query: 169 LDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228
           L A  +FD    R   PW  ++  Y       + L LF   +    + D    +  L AC
Sbjct: 45  LIAHQVFD----RRPTPWHALLKAYSHGPHPQDALQLFRHARWHAAD-DTYAFTFALKAC 99

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
           +  G       +H  ++        ++ + L+ +Y  CGC+  ++  F+++ +KN V   
Sbjct: 100 AGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWN 159

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
            +++G++  G+VE ARL+F++M  ++++ WS MI GY     P EA+ LF  M   G+ P
Sbjct: 160 VVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISP 219

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
            ++T+L+V+ A +++G +   + +H Y +K     D+RV N++ID+YAK GS++++  VF
Sbjct: 220 SEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVF 279

Query: 409 ERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           + M  RRN++SWTS+I+ FA+HG +  A+  F  M+   I PN +TF+ VL+ACSH GLV
Sbjct: 280 DEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLV 339

Query: 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
           ++G   F SM  EYNI P  +H+GC++D+ GRA  LREA +++   P   N  +W +L+ 
Sbjct: 340 EQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLG 399

Query: 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILK 586
            C  +GE+E+ E   K++L L+ +  G  V+LSN+  + +R+ D   +RK + +R  +K
Sbjct: 400 CCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVK 458



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 218/491 (44%), Gaps = 79/491 (16%)

Query: 11   LTLP-TSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP--TTTPSSL 67
            LT P    A +  ++L   +Q H  I KL          LL  +  S SL        +L
Sbjct: 553  LTFPFILKACARINALNEGEQMHNHITKLG---------LLSDIFVSNSLIHLYAACGNL 603

Query: 68   YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
             YA S+F ++        N  I   S  +R K  L +F  M NEG+  D+ +   ++ A 
Sbjct: 604  CYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSAC 663

Query: 128  AR------AEGLLEGMQVHGLGTKLGFGS---DPFVQTG--------------------- 157
             R      A+ ++  ++ + +   +  G+   D F + G                     
Sbjct: 664  TRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMN 723

Query: 158  -LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
             ++  Y     I+ AR +FD++  +D++ WS MI GY Q   F + L +F +M+ + V+P
Sbjct: 724  AMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKP 783

Query: 217  DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
            D +V++ ++S+C+  G L  G+ VHE++  NN+  D  ++++LI MY  C          
Sbjct: 784  DAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKC---------- 833

Query: 277  DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
                                 G  ++A  +F +M EKD + W+++I G A N   +E+L 
Sbjct: 834  ---------------------GSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLN 872

Query: 337  LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDM 394
            LF  M   G +P+ VT L V+ ACA+  ++++    H    K  +  + ++ +   ++D+
Sbjct: 873  LFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLD-HFESMKRLYSLEPQMKHYGCVVDL 931

Query: 395  YAKCGSLESA-REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGV 452
              + G LE A R + E     + + W  ++ +   HGD   A I   K+ + E  +    
Sbjct: 932  LGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNY 991

Query: 453  TFIGVLYACSH 463
            T +   YA +H
Sbjct: 992  TLLSNAYASAH 1002



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 175/396 (44%), Gaps = 70/396 (17%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F + P P     +  ++A S    P+ AL++F +        D ++F   LKA A 
Sbjct: 47  AHQVFDRRPTP----WHALLKAYSHGPHPQDALQLF-RHARWHAADDTYAFTFALKACAG 101

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD------------------- 170
                  MQ+HGL  + GF    +V T LV +Y  CG + D                   
Sbjct: 102 LGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVV 161

Query: 171 ------------ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
                       ARL+F++M  R++V WS MIDGY +     E + LF  M    + P E
Sbjct: 162 ITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSE 221

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           + +  ++ A S  G +  GEA+H +     +  D  + ++LI +YA  G +  +  +FD+
Sbjct: 222 ITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDE 281

Query: 279 VL-LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
           +L  +NLV  T+++SG++  G                                  +A++L
Sbjct: 282 MLDRRNLVSWTSIISGFAMHGL-------------------------------SVKAVEL 310

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQA-QRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           F +M+  G++P+++T LSV+ AC+H G+++Q        I +     D++    IIDM  
Sbjct: 311 FADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLG 370

Query: 397 KCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD 431
           + G L  A ++        N   W +++   + +G+
Sbjct: 371 RAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGE 406


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/708 (34%), Positives = 382/708 (53%), Gaps = 44/708 (6%)

Query: 10  PLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYY 69
           P+  PT   +   + L     T  ++L    +HH  NSL+         LP + P  L Y
Sbjct: 3   PVPWPTPRTVRQAAELHAHLTTSGRLLHPPSAHHLLNSLV-------NCLPPSDPLHLRY 55

Query: 70  ALSIFSQIPAPPSRVSNKF---IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK- 125
           AL +F ++PA             RA + S  P     +F +M    +  D F+F  + K 
Sbjct: 56  ALHLFDRMPASTFLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKC 115

Query: 126 -AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            + +R   LL  M        +   + PFV   L+ MY   G   D R  FD++  +D V
Sbjct: 116 SSSSRPRALLCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAV 175

Query: 185 PWSVMIDGYFQNGLFD-------------------------------EVLNLFEEMKMSN 213
            W+++I G  + G+                                 E ++ F+ M    
Sbjct: 176 SWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEG 235

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           + PD++ +  +LSACS+  +L  G ++H  + +  +++  +L   LI MYA CG    A+
Sbjct: 236 IAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAR 295

Query: 274 GLFDKVLLKNLVVS-TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
            +FD V       S  A++ GY + G V+ AR +FDQM  +D+I +++MI+GY  +   +
Sbjct: 296 EVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLR 355

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
           EAL LF  M+   ++ D  T++S++SACA LG L Q + +H  I+      D+ +  A++
Sbjct: 356 EALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALL 415

Query: 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
           DMY KCG +  A  VF+RM +R+V +WT+MI   A +G  +  L +F +M+ +   PN V
Sbjct: 416 DMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPV 475

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
           ++I VL ACSH+ L++EGR  F  M   YNI P+ EHYGCM+DL GR+ LL EA++LV+T
Sbjct: 476 SYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKT 535

Query: 513 MPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572
           MP  PN VIW S+++ACRVH  I+LA+ AA+ LL+++PD D   V L NI    ++W+D 
Sbjct: 536 MPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDA 595

Query: 573 GELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYV 632
            ++R  M+ER + K    S + +  +V++F+ +D+SH +  +I   L E+   LK AGY 
Sbjct: 596 SKIRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSAGYS 655

Query: 633 PDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLR 680
           P      VD+++EEK + +L HSEKLA+ +GL+S   +  + I+KNLR
Sbjct: 656 PITSQVTVDVDEEEKEQTLLAHSEKLAIAFGLVSLAPNLPVHIIKNLR 703



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 131/520 (25%), Positives = 237/520 (45%), Gaps = 42/520 (8%)

Query: 66   SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
            S + +LS+F ++P   + + N  +R +      +  +  FL M  + L ++  S+   +K
Sbjct: 843  SPHASLSLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMK 902

Query: 126  AIAR-AEGLLEGMQVHGLGTKLGF-GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
               +  E L +G Q+HG+  K G+  S+ F+   LV +Y A G  +D     + +   D+
Sbjct: 903  GCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDV 962

Query: 184  VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
            + W+ ++  Y   G   E +   ++M      P       +L+   + G+   G  +H  
Sbjct: 963  ISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQIHGI 1022

Query: 244  IIDNNVALDA-HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
            +     +  + H+Q+TLI MY  C C D +                              
Sbjct: 1023 VHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLA---------------------------- 1054

Query: 303  ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
               IF+++    L C +++I+     N    AL++ + M V G+ PD VT  + + A + 
Sbjct: 1055 ---IFNEIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISL 1111

Query: 363  LGV--LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
                 L   Q +H  + K  F  D+ V +++I  YA  G L S+  +FE +   NVI +T
Sbjct: 1112 SASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFT 1171

Query: 421  SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
            ++I+A A +GD   A+  F++M    + P+ VTF+  +  C  AG+ +EGR +   M   
Sbjct: 1172 AIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRAS 1231

Query: 481  YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
              + P   H+ CMV+L  R   ++EA+E++E  P       W SL+ +C+ HGE  L + 
Sbjct: 1232 RELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKR 1291

Query: 541  AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
            AA  L+ +        + +SN +       D+G+   +++
Sbjct: 1292 AANMLIDVGRKDPATTLQVSNFF------NDIGDRETALR 1325



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 110/509 (21%), Positives = 205/509 (40%), Gaps = 68/509 (13%)

Query: 61   TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
            +  P SL  ++++  +  A  +R+   FIR          A  V+  M+  G+     +F
Sbjct: 745  SPAPFSLRSSVTMAVRDVASLNRMITGFIR----DGLADRARAVYRWMVASGIRETPHTF 800

Query: 121  PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
              IL   +  E L    Q+HG    LG   +PFV + LV  Y        +  +F ++  
Sbjct: 801  STILGVCSTYEAL----QLHGRVLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPL 856

Query: 181  RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN-LSYGEA 239
            ++    +V++ G     L +E++  F +M+   +E + +     +  C + G  L  G  
Sbjct: 857  QNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQ 916

Query: 240  VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
            +H  +          L++  I                      N+ +S ++V  YS  G 
Sbjct: 917  LHGVV----------LKAGWIP--------------------SNIFLSNSLVDLYSAIGD 946

Query: 300  VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
              D     + ++ +D+I W++++S YA+  H +EA+    +M   G  P   + +S+++ 
Sbjct: 947  SVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLAL 1006

Query: 360  CAHLGVLDQAQRIHLYIDKNAFG-GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
                G      +IH  + K  F    + V   +IDMY KC   + +  +F  +    +  
Sbjct: 1007 SGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALEC 1066

Query: 419  WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS-------------HAG 465
              S+I +         AL   + M  E + P+ VTF   + A S             H+ 
Sbjct: 1067 CNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSC 1126

Query: 466  LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
            LV  G E+  ++ +          Y C   L   ++L+ E L         PNV+ + ++
Sbjct: 1127 LVKLGFEMDMAVCSSL-----ITAYACAGQL-SSSHLIFEGL-------LDPNVICFTAI 1173

Query: 526  MAACRVHGEIELAEFAAKQLLQ--LDPDH 552
            ++AC  +G+   A     Q++   L PD+
Sbjct: 1174 ISACARYGDGARAMELFDQMVSSGLKPDN 1202


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/574 (36%), Positives = 340/574 (59%), Gaps = 32/574 (5%)

Query: 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
           SD F+   LV MY   G   DA+ +FD+M  +D+V W+ ++ G    G     LN F  M
Sbjct: 95  SDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRM 154

Query: 210 KM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           +  S  +P+E+ L  ++SAC+  G L  G+++H  ++   ++  A + ++LI MY   G 
Sbjct: 155 RTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGF 214

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           +D A  L                               F++M  + L+ W++M+  +  N
Sbjct: 215 LDAASQL-------------------------------FEEMPVRSLVSWNSMVVIHNHN 243

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
            + ++ + LFN M+  G+ PD+ TM++++ AC   G+  QA+ IH YI +  F  D+ + 
Sbjct: 244 GYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIA 303

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
            A++++YAK G L ++ ++FE ++ R+ I+WT+M+  +A+H   R A+  F+ M  E ++
Sbjct: 304 TALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVE 363

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
            + VTF  +L ACSH+GLV+EG++ F  M+  Y + P+ +HY CMVDL GR+  L +A E
Sbjct: 364 VDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYE 423

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
           L+++MP  P+  +WG+L+ ACRV+G +EL +  A+QLL LDP      ++LSNIY+    
Sbjct: 424 LIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGL 483

Query: 569 WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
           W+D  ++R  MKER + +   CS IE  N+++ F+  D+ H ++D+I+ KL E+I +++ 
Sbjct: 484 WRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIRE 543

Query: 629 AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
           AG  P     L D+++E K ++I  HSEKLA+ +GL+ +     + I KNLR+C DCH+ 
Sbjct: 544 AGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHST 603

Query: 689 IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            K  S +  R I+IRD  RFHH+ DG+CSC+DYW
Sbjct: 604 AKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 203/434 (46%), Gaps = 45/434 (10%)

Query: 4   LSQPTKPLTLPTST--AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           LS P +  ++  S   AISSC+S+++    HA+++K    ++S   +  +L+   F L  
Sbjct: 55  LSPPFQVYSIVQSLVFAISSCTSVSYCSAIHARVIK--SLNYSDGFIGDRLVSMYFKLGY 112

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSF 120
                   A  +F ++P       N  +  +S        L  F +M  E G   +  + 
Sbjct: 113 DED-----AQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTL 167

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
             ++ A A    L EG  +HG+  KLG      V   L+ MYG  G +  A  +F++M  
Sbjct: 168 LSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPV 227

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           R +V W+ M+  +  NG  ++ ++LF  MK + + PD+  +  +L AC+  G     E++
Sbjct: 228 RSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESI 287

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H +I       D  + + L+ +YA  G ++ ++ +F+++  ++ +  TAM++G       
Sbjct: 288 HAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAG------- 340

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
                                   YA +   +EA+KLF+ M   G++ D VT   ++SAC
Sbjct: 341 ------------------------YAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSAC 376

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVN--NAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           +H G++++ ++ +  I    +  + R++  + ++D+  + G LE A E+ + M       
Sbjct: 377 SHSGLVEEGKK-YFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSG 435

Query: 419 -WTSMINAFAIHGD 431
            W +++ A  ++G+
Sbjct: 436 VWGALLGACRVYGN 449



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 162/335 (48%), Gaps = 38/335 (11%)

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
           ++  ++ A S   ++SY  A+H  +I +    D  +   L++MY   G  + A+ LFD+ 
Sbjct: 64  IVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDE- 122

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
                                         M  KDL+ W++++SG +   +    L  F 
Sbjct: 123 ------------------------------MPNKDLVSWNSLMSGLSGRGYLGACLNAFC 152

Query: 340 EMQV-CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            M+   G +P++VT+LSV+SACA +G LD+ + +H  + K    G  +V N++I+MY K 
Sbjct: 153 RMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKL 212

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G L++A ++FE M  R+++SW SM+     +G A   +  FN MK   I+P+  T + +L
Sbjct: 213 GFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALL 272

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            AC+  GL  +   I A + +             +++L+ +   L  + ++ E +    +
Sbjct: 273 RACTDTGLGRQAESIHAYI-HRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIK-DRD 330

Query: 519 VVIWGSLMAACRVHG----EIELAEFAAKQLLQLD 549
            + W +++A   VH      I+L +   K+ +++D
Sbjct: 331 RIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVD 365



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 104/211 (49%), Gaps = 8/211 (3%)

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           +++  IS+C  +        IH  + K+    D  + + ++ MY K G  E A+ +F+ M
Sbjct: 67  SLVFAISSCTSV---SYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM 123

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEG 470
             ++++SW S+++  +  G     L  F +M+ ES   PN VT + V+ AC+  G +DEG
Sbjct: 124 PNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEG 183

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
           + +   +  +  +  K +    +++++G+   L  A +L E MP   ++V W S++    
Sbjct: 184 KSLHGVVV-KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMP-VRSLVSWNSMVVIHN 241

Query: 531 VHGEIE--LAEFAAKQLLQLDPDHDGALVLL 559
            +G  E  +  F   +   ++PD    + LL
Sbjct: 242 HNGYAEKGMDLFNLMKRAGINPDQATMVALL 272


>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
 gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
          Length = 653

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/477 (44%), Positives = 314/477 (65%), Gaps = 4/477 (0%)

Query: 250 ALDAH--LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
             D H  ++++LI  Y  CG +  A+ + D++++K+++  T++V+ YSR+  +  A  +F
Sbjct: 177 GFDKHRFVENSLIGAYVACGDVGAARKVLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVF 236

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
                KD++ W+AM++GYA+N  P +AL+ F +M   GM  D+V++   ISACA LG + 
Sbjct: 237 ALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVR 296

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           +A  I    D++  G ++ V + ++DMYAKCG ++ A  VFE M+ +NV +++SMI   A
Sbjct: 297 RAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLA 356

Query: 428 IHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
            HG A +A+  FN M +   ++PN VTFIGVL ACSHAG+V EGR  FA M + Y I P 
Sbjct: 357 SHGRANDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPS 416

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            +HY CMVDL GRA L+ EAL+LV++M   P+  +WG+L+ ACR+HG  ++A+ AA+ L 
Sbjct: 417 ADHYTCMVDLLGRAGLVIEALDLVKSMTVEPHGGVWGALLGACRIHGNTKVAKVAAQHLF 476

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE-MNNEVYEFLTA 605
           +L+P+  G  VLLSN  A    W +V ++RK M+ RG+ K+ A S  E  +  V++F   
Sbjct: 477 KLEPEGIGNYVLLSNTLASAGEWDEVSKVRKLMRIRGLKKDPAVSSFEGRDGLVHQFFAG 536

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           D +H    +I + L E+ + LK AGYVP + S + ++ DEEK  +++ HSEKLAL +GL+
Sbjct: 537 DNTHPWMHEIKKTLLELRARLKLAGYVPVLSSVVYNVSDEEKERLLMGHSEKLALSFGLL 596

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + +  S IRIVKNLR+CEDCH FI+LVSKV   EI++RD  RFHH++DG CSC  +W
Sbjct: 597 TLESRSSIRIVKNLRICEDCHLFIRLVSKVEPIEIIVRDNMRFHHFRDGECSCGGFW 653



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/422 (22%), Positives = 183/422 (43%), Gaps = 71/422 (16%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVF---LKMLNEGLTIDRFSFPPILK 125
           YA+++FS +  P   ++   +R    +  P    +VF    +     L    F+F P+ K
Sbjct: 95  YAVAVFSSLSPPDPFLAAALLRFAHLTQPPLETFRVFSGLRRAHGRDLPFLPFAFSPLAK 154

Query: 126 AIARAEGLLEGMQVHGLGTKLG-FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI- 183
           + A A  L      H +   LG F    FV+  L+G Y ACG +  AR + D+M  +D+ 
Sbjct: 155 SAAAARSLPAAAGAHAVSLLLGGFDKHRFVENSLIGAYVACGDVGAARKVLDEMVVKDVI 214

Query: 184 ------------------------------VPWSVMIDGYFQNGLFDEVLNLFEEMKMSN 213
                                         V W+ M+ GY QN +  + L  FE+M  + 
Sbjct: 215 SWTSIVAAYSRSRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAG 274

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           +  DE+ L+  +SAC++ G +     + E    + +  +  + S L+ MYA CG +D A 
Sbjct: 275 MPIDEVSLTGAISACAQLGAVRRAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEAC 334

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
            +F+ +  KN+   ++M+ G +  G+  DA  +F+ MV +                    
Sbjct: 335 RVFEGMQEKNVYTYSSMIVGLASHGRANDAIALFNDMVRR-------------------- 374

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AI 391
                       ++P+ VT + V++AC+H G++ +  R +    K+ +G     ++   +
Sbjct: 375 ----------ADVEPNHVTFIGVLTACSHAGMVKEG-RYYFAQMKDRYGILPSADHYTCM 423

Query: 392 IDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           +D+  + G +  A ++ + M    +   W +++ A  IHG+ + A +    +    ++P 
Sbjct: 424 VDLLGRAGLVIEALDLVKSMTVEPHGGVWGALLGACRIHGNTKVAKVAAQHLF--KLEPE 481

Query: 451 GV 452
           G+
Sbjct: 482 GI 483


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/574 (36%), Positives = 340/574 (59%), Gaps = 32/574 (5%)

Query: 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
           SD F+   LV MY   G   DA+ +FD+M  +D+V W+ ++ G    G     LN F  M
Sbjct: 152 SDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRM 211

Query: 210 KM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           +  S  +P+E+ L  ++SAC+  G L  G+++H  ++   ++  A + ++LI MY   G 
Sbjct: 212 RTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGF 271

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           +D A  L                               F++M  + L+ W++M+  +  N
Sbjct: 272 LDAASQL-------------------------------FEEMPVRSLVSWNSMVVIHNHN 300

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
            + ++ + LFN M+  G+ PD+ TM++++ AC   G+  QA+ IH YI +  F  D+ + 
Sbjct: 301 GYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIA 360

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
            A++++YAK G L ++ ++FE ++ R+ I+WT+M+  +A+H   R A+  F+ M  E ++
Sbjct: 361 TALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVE 420

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
            + VTF  +L ACSH+GLV+EG++ F  M+  Y + P+ +HY CMVDL GR+  L +A E
Sbjct: 421 VDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYE 480

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
           L+++MP  P+  +WG+L+ ACRV+G +EL +  A+QLL LDP      ++LSNIY+    
Sbjct: 481 LIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGL 540

Query: 569 WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
           W+D  ++R  MKER + +   CS IE  N+++ F+  D+ H ++D+I+ KL E+I +++ 
Sbjct: 541 WRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIRE 600

Query: 629 AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
           AG  P     L D+++E K ++I  HSEKLA+ +GL+ +     + I KNLR+C DCH+ 
Sbjct: 601 AGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHST 660

Query: 689 IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            K  S +  R I+IRD  RFHH+ DG+CSC+DYW
Sbjct: 661 AKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 196/418 (46%), Gaps = 43/418 (10%)

Query: 18  AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI 77
           AISSC+S+++    HA+++K    ++S   +  +L+   F L          A  +F ++
Sbjct: 128 AISSCTSVSYCSAIHARVIK--SLNYSDGFIGDRLVSMYFKLGYDED-----AQRLFDEM 180

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPILKAIARAEGLLEG 136
           P       N  +  +S        L  F +M  E G   +  +   ++ A A    L EG
Sbjct: 181 PNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEG 240

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
             +HG+  KLG      V   L+ MYG  G +  A  +F++M  R +V W+ M+  +  N
Sbjct: 241 KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHN 300

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           G  ++ ++LF  MK + + PD+  +  +L AC+  G     E++H +I       D  + 
Sbjct: 301 GYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIA 360

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           + L+ +YA  G ++ ++ +F+++  ++ +  TAM++G                       
Sbjct: 361 TALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAG----------------------- 397

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
                   YA +   +EA+KLF+ M   G++ D VT   ++SAC+H G++++ ++ +  I
Sbjct: 398 --------YAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKK-YFEI 448

Query: 377 DKNAFGGDLRVN--NAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIHGD 431
               +  + R++  + ++D+  + G LE A E+ + M        W +++ A  ++G+
Sbjct: 449 MSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGN 506



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 162/335 (48%), Gaps = 38/335 (11%)

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
           ++  ++ A S   ++SY  A+H  +I +    D  +   L++MY   G  + A+ LFD++
Sbjct: 121 IVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM 180

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
             K+LV                                W++++SG +   +    L  F 
Sbjct: 181 PNKDLV-------------------------------SWNSLMSGLSGRGYLGACLNAFC 209

Query: 340 EMQV-CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            M+   G +P++VT+LSV+SACA +G LD+ + +H  + K    G  +V N++I+MY K 
Sbjct: 210 RMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKL 269

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G L++A ++FE M  R+++SW SM+     +G A   +  FN MK   I+P+  T + +L
Sbjct: 270 GFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALL 329

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            AC+  GL  +   I A + +             +++L+ +   L  + ++ E +    +
Sbjct: 330 RACTDTGLGRQAESIHAYI-HRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIK-DRD 387

Query: 519 VVIWGSLMAACRVHG----EIELAEFAAKQLLQLD 549
            + W +++A   VH      I+L +   K+ +++D
Sbjct: 388 RIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVD 422



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 129/286 (45%), Gaps = 26/286 (9%)

Query: 298 GQVEDARLIFDQMVEKDLICWSAMIS--------------GYAENNHPQEALKLFNEMQV 343
           GQ     ++F+Q + +  + W++++S               +   +   +  K FN  + 
Sbjct: 46  GQRGGLEIVFNQQLTRLAVPWNSIVSPVRCGTSISHNRSFAFRHTDLIPKQFKRFNTNKG 105

Query: 344 CGMKPDKVTML-------SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           C +  +    +       S++ A +    +     IH  + K+    D  + + ++ MY 
Sbjct: 106 CCIFREASQFIVVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYF 165

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFI 455
           K G  E A+ +F+ M  ++++SW S+++  +  G     L  F +M+ ES   PN VT +
Sbjct: 166 KLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLL 225

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
            V+ AC+  G +DEG+ +   +  +  +  K +    +++++G+   L  A +L E MP 
Sbjct: 226 SVVSACADMGALDEGKSLHGVVV-KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMP- 283

Query: 516 APNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALVLL 559
             ++V W S++     +G  E  +  F   +   ++PD    + LL
Sbjct: 284 VRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALL 329


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/552 (40%), Positives = 320/552 (57%), Gaps = 44/552 (7%)

Query: 183 IVPWSVMIDGYFQNGLFD------------EVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           +VP SV ID +  N L                 + F  M  S   P++     +L AC  
Sbjct: 100 LVP-SVPIDAFLANTLIRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKAC-- 156

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
           A     G   H   +      D ++ +TLI MY+  G      G F              
Sbjct: 157 AAFPGVGVQAHAAALKFGFTTDQYVSNTLIHMYSCFG------GEF-------------- 196

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
                    + DAR +FD+M +   + WSAMI GY  +    +A+ LF EMQ  G++PD+
Sbjct: 197 ---------LGDARNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDE 247

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           VTM+ V++A A LG L+ A+ +  +++K   G  + + NA+ID  AKCG L+ A  VF+ 
Sbjct: 248 VTMIGVLAAAADLGALELARWVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQG 307

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M+ R ++SWTS+I+A A+ G  + A+  F +MK   + P+ V FIGVL ACSHAG+VDEG
Sbjct: 308 MKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEG 367

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
              F SM   Y I PK EHYGCMVD+FGRA ++  A+E V  MP  PN +IW +L+AACR
Sbjct: 368 YGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACR 427

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
            HG +EL E   + LL   P H+   V+LSN+YA  +RW++  E+R+ M +RGI K   C
Sbjct: 428 AHGRLELGETITRNLLNEYPAHEANYVMLSNVYALTRRWKEKSEIRREMSKRGIKKVPGC 487

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
           S +E++ EV+EF+  D SH Q  +IY  + E+  EL+ AG++      L+DL++E+K   
Sbjct: 488 SLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELRRAGHISATSEVLLDLDEEDKEVA 547

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           + WHSEKLA+ + L+ +   + +R+VKNLRVC DCH  IK +S VY REI++RDR+RFH 
Sbjct: 548 LQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHR 607

Query: 711 YKDGVCSCKDYW 722
           +K+G CSC D+W
Sbjct: 608 FKNGSCSCNDFW 619



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 179/366 (48%), Gaps = 48/366 (13%)

Query: 77  IPAPP--SRVSNKFIRAISWSHRPKHALKV---FLKMLNEGLTIDRFSFPPILKAIARAE 131
           +P+ P  + ++N  IRA + S  P   L+    F  ML      ++F+FP +LKA A   
Sbjct: 101 VPSVPIDAFLANTLIRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKACAAFP 160

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK--ILDARLMFDKMSYRDIVPWSVM 189
           G+  G+Q H    K GF +D +V   L+ MY   G   + DAR +FD+M+    V WS M
Sbjct: 161 GV--GVQAHAAALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAM 218

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY ++GL  + + LF EM+ S V PDE+ +  +L+A +  G L     V  F+    +
Sbjct: 219 IGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGI 278

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                L + LI   A CG +D A  +F  +  + +V  T+++   +  G+          
Sbjct: 279 GKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGR---------- 328

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                                 +EA+ +F EM+  G++PD V  + V++AC+H G++D+ 
Sbjct: 329 ---------------------GKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEG 367

Query: 370 QRIHLYID--KNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMIN 424
              + Y +  + A+G D ++ +   ++DM+ + G +E A E   +M  + N I W +++ 
Sbjct: 368 ---YGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVA 424

Query: 425 AFAIHG 430
           A   HG
Sbjct: 425 ACRAHG 430


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 194/438 (44%), Positives = 300/438 (68%)

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
           +V+ A+V  Y++ G  + A  +F++M +KD+I W+++++G   N   +EAL+LF EM++ 
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
           G+ PD++ + +V+SACA L VL+  +++H    K+  G  L V+N+++ MYAKCG +E A
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
            +VF+ M  ++VI+WT++I  +A +G  R +L F+N M    + P+ +TFIG+L+ACSHA
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHA 182

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGS 524
           GLV+ GR  F SM   Y I P  EHY CM+DL GR+  L EA EL+  M   P+  +W +
Sbjct: 183 GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKA 242

Query: 525 LMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584
           L+AACRVHG +EL E AA  L +L+P +    VLLSN+Y+   +W++  + R+ MK RG+
Sbjct: 243 LLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGV 302

Query: 585 LKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLED 644
            KE  CS IEM+++V+ F++ DRSH +T +IY K++E++  +K AGYVPD++ AL D+++
Sbjct: 303 SKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDE 362

Query: 645 EEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRD 704
           E K   + +HSEKLA+ +GL++    + IRI KNLR+C DCH  +K VS V+ R +++RD
Sbjct: 363 EGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRD 422

Query: 705 RTRFHHYKDGVCSCKDYW 722
              FHH+++G CSC DYW
Sbjct: 423 SNCFHHFREGACSCSDYW 440



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 146/282 (51%), Gaps = 35/282 (12%)

Query: 153 FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS 212
            V   LV MY   G    A  +F+KM+ +D++ W+ ++ G   NG ++E L LF EM++ 
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 213 NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
            + PD++V++ +LSAC+    L +G+ VH   + + +     + ++L++MYA CGC++ A
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
             +FD + +++++  TA++ G                               YA+N   +
Sbjct: 123 NKVFDSMEIQDVITWTALIVG-------------------------------YAQNGRGR 151

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--A 390
           E+L  +N+M   G+KPD +T + ++ AC+H G+++   R +    +  +G      +   
Sbjct: 152 ESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHG-RSYFQSMEEVYGIKPGPEHYAC 210

Query: 391 IIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD 431
           +ID+  + G L  A+E+  +M  + +   W +++ A  +HG+
Sbjct: 211 MIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGN 252



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 131/286 (45%), Gaps = 5/286 (1%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           YA  +F ++           +     +   + AL++F +M   G+  D+     +L A A
Sbjct: 20  YAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACA 79

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
               L  G QVH    K G GS   V   LV MY  CG I DA  +FD M  +D++ W+ 
Sbjct: 80  ELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTA 139

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID-N 247
           +I GY QNG   E LN + +M  S V+PD +    +L ACS AG + +G +  + + +  
Sbjct: 140 LIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVY 199

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLI 306
            +       + +I +    G +  AK L +++ ++ +  V  A+++     G VE     
Sbjct: 200 GIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERA 259

Query: 307 FDQMVE---KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
            + + E   K+ + +  + + Y+     +EA K    M++ G+  +
Sbjct: 260 ANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKE 305


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/524 (39%), Positives = 324/524 (61%), Gaps = 4/524 (0%)

Query: 203 LNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           L  +  M    +  D   L  +L +C+    +  G  VH   +   +  D ++ ++LI M
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           Y  CG +  A+ LFDK++++++    A+++GY + G++  A  +F++M  ++++ W+AMI
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 323 SGYAENNHPQEALKLFNEMQVCG--MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           SGY +N   ++AL LF+EM   G  MKP+ VT++SV+ ACA    L++ +RIH + +   
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIG 271

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIF 438
              +  V  A+  MYAKC SL  AR  F+ + +  +N+I+W +MI A+A HG    A+  
Sbjct: 272 LHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSI 331

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F  M    + P+ VTF+G+L  CSH+GL+D G   F  M   +++ P+ EHY C+VDL G
Sbjct: 332 FENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLG 391

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558
           RA  L EA EL+  MP      +WG+L+AACR H  +E+AE AA++L  L+PD+ G  VL
Sbjct: 392 RAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVL 451

Query: 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEK 618
           LSN+YA+   W++V +LR  +K +G+ K   CS IE+N + + F+ AD+SH Q  +IY+ 
Sbjct: 452 LSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKF 511

Query: 619 LNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKN 678
           L  +  ++K AGY+PD    L D+ +EEK   +  HSEKLA+ +GL++++    +R+ KN
Sbjct: 512 LEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKN 571

Query: 679 LRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LR+C DCH   K +SK+Y REI++RD  RFH +KDG CSC DYW
Sbjct: 572 LRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 185/413 (44%), Gaps = 73/413 (17%)

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM 161
           L+ + +M   GL  D F+ P +LK+ A    +  G  VHG G ++G   D +V   L+ M
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 162 YGACGKILDARLMFDK-------------------------------MSYRDIVPWSVMI 190
           Y  CG I DAR +FDK                               M +R+IV W+ MI
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 191 DGYFQNGLFDEVLNLFEEMKM--SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
            GY QNG  ++ L LF+EM    S ++P+ + +  +L AC+++  L  G  +H+F     
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIG 271

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLL--KNLVVSTAMVSGYSRAGQVEDARLI 306
           + L++ +Q+ L  MYA C  +  A+  FD +    KNL+    M++ Y+  G   +A  I
Sbjct: 272 LHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSI 331

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F+ M+                                 G++PD VT + ++S C+H G++
Sbjct: 332 FENMLRA-------------------------------GVQPDAVTFMGLLSGCSHSGLI 360

Query: 367 DQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMI 423
           D     H          + RV +   ++D+  + G L  A+E+  +M  +   S W +++
Sbjct: 361 DAGLN-HFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALL 419

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFA 475
            A   H +   A +   ++     D +G    +  LYA   AG+ +E +++ A
Sbjct: 420 AACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYA--EAGMWEEVKKLRA 470


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/630 (36%), Positives = 362/630 (57%), Gaps = 35/630 (5%)

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE-GMQVHGLGTKLGFGSDPFVQT 156
            K +L +  +M   G+  + F+F   LKA   A G++E GMQ+HG+  K GF     V  
Sbjct: 86  AKGSLALLCEMGYSGVKPNEFTFSTSLKACG-ALGVVENGMQIHGMCVKSGFEWVSVVGN 144

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
             + MY  CG+I  A  +F+KM +R++V W+ MI G+   G   + L LF+ M+     P
Sbjct: 145 ATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVP 204

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           DE   +  L AC   G +  G  +H               ++LIT           +G  
Sbjct: 205 DEFTFTSTLKACGALGAIRGGTQIH---------------ASLIT-----------RGF- 237

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
             + ++N ++++A+V  Y++ G + +A+ +FD++ +K+LI WSA+I G+A+  +  EA+ 
Sbjct: 238 -PISIRN-IIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMD 295

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           LF +++      D   +  ++   A L +++Q +++H YI K   G D+ V N+IIDMY 
Sbjct: 296 LFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYL 355

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KCG  E A  +F  M+ RNV+SWT MI  +  HG    A+  FN+M+ + I+ + V ++ 
Sbjct: 356 KCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLA 415

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           +L ACSH+GL+ E +E F+ + N + + P  EHY CMVD+ GRA  L+EA  L+E M   
Sbjct: 416 LLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLK 475

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
           PN  IW +L++ACRVHG +E+     + L ++D D+    V++SNIYA+   W++   +R
Sbjct: 476 PNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVR 535

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK-PAGYVPDI 635
           K +K +G+ KE   S +E+N E++ F   D +H  T++I+E L E+   +K   GY   +
Sbjct: 536 KLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGL 595

Query: 636 HSALVDLEDEEKREVILWHSEKLALCYGLIS---SKKDSCIRIVKNLRVCEDCHNFIKLV 692
             AL D+E+E K E +  HSEKLA+   L+     KK   IR+ KNLRVC DCH FIK +
Sbjct: 596 RFALHDVEEESKEENLRVHSEKLAIGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKGL 655

Query: 693 SKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           SK+  +  V+RD  RFH ++DG+CSC DYW
Sbjct: 656 SKILKKVFVVRDANRFHRFEDGLCSCGDYW 685



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 216/451 (47%), Gaps = 41/451 (9%)

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           +R     +L+  ++     +G+QVH     +GFG D  +   L+ MYG C ++  A  +F
Sbjct: 3   ERQRLAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVF 62

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           D+M  R++V W+ ++ GY Q G     L L  EM  S V+P+E   S  L AC   G + 
Sbjct: 63  DRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVE 122

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G  +H   + +     + + +  I MY+ CG + MA+ +F+K+  +NLV   AM++G++
Sbjct: 123 NGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHT 182

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
             G                               + +++L LF  MQ  G  PD+ T  S
Sbjct: 183 HEG-------------------------------NGRKSLVLFQRMQGQGEVPDEFTFTS 211

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLR--VNNAIIDMYAKCGSLESAREVFERMRR 413
            + AC  LG +    +IH  +    F   +R  + +AI+D+YAKCG L  A++VF+R+ +
Sbjct: 212 TLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQ 271

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           +N+ISW+++I  FA  G+   A+  F ++++   + +G     ++   +   LV++G+++
Sbjct: 272 KNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQM 331

Query: 474 FASMTNEYNIPPKYE--HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
              +     +P   +      ++D++ +  L  EA  L   M    NVV W  ++     
Sbjct: 332 HCYIL---KVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQ-VRNVVSWTVMITGYGK 387

Query: 532 H--GEIELAEFAAKQLLQLDPDHDGALVLLS 560
           H  GE  +  F   QL  ++ D    L LLS
Sbjct: 388 HGLGEKAIHLFNRMQLDGIELDEVAYLALLS 418



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 167/346 (48%), Gaps = 34/346 (9%)

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           L+K+L  CS+ G    G  VH   ++     D  + + LI MY  C  +D+A        
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACS------ 60

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                                    +FD+M+E++++ W+A++ GY +  + + +L L  E
Sbjct: 61  -------------------------VFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCE 95

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M   G+KP++ T  + + AC  LGV++   +IH    K+ F     V NA IDMY+KCG 
Sbjct: 96  MGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGR 155

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +  A +VF +M  RN++SW +MI      G+ R +L+ F +M+ +   P+  TF   L A
Sbjct: 156 IGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKA 215

Query: 461 CSHAGLVDEGREIFASM-TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           C   G +  G +I AS+ T  + I  +      +VDL+ +   L EA ++ + +    N+
Sbjct: 216 CGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIE-QKNL 274

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG-ALVLLSNIYA 564
           + W +L+      G +  A    +QL +   + DG  L ++  ++A
Sbjct: 275 ISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFA 320


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/670 (34%), Positives = 360/670 (53%), Gaps = 52/670 (7%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAIS----WSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           A  IF+ +PA      N  +   +    + H   H L + ++M    L  +  +   +L 
Sbjct: 179 AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQM--HRLRPNASTLVALLP 236

Query: 126 AIARAEGLLEGMQVHGL----------GTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
            +A+   L +G  VH             +K        + T L+ MY  CG +L AR +F
Sbjct: 237 LLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVF 296

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM---KMSNVEPDEMVLSKILSACSRAG 232
           D M  R+ V WS +I G+       +   LF+ M    +  + P    ++  L AC+   
Sbjct: 297 DAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRACASLD 354

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
           +L  GE +H  +  + V  D    ++L++MYA                            
Sbjct: 355 HLRMGEQLHALLAKSGVHADLTAGNSLLSMYA---------------------------- 386

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
              +AG ++ A  +FD+M  KD + +SA++SGY +N   +EA  +F +MQ C ++PD  T
Sbjct: 387 ---KAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAAT 443

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           M+S+I AC+HL  L   +  H  +       +  + NA+IDMYAKCG ++ +R+VF  M 
Sbjct: 444 MVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMP 503

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
            R+++SW +MI  + IHG  + A   F +M +    P+GVTFI +L ACSH+GLV EG+ 
Sbjct: 504 SRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKH 563

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
            F  M + Y + P+ EHY CMVDL  R   L EA E +++MP   +V +W +L+ ACRV+
Sbjct: 564 WFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVY 623

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
             I+L +  ++ + +L P+  G  VLLSNIY+   R+ +  E+R   K +G  K   CS 
Sbjct: 624 KNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSW 683

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652
           IE+N  ++ F+  D+SH Q+ +IY +L+ ++  +K  GY PD    L DLE+EEK + ++
Sbjct: 684 IEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALI 743

Query: 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712
            HSEKLA+ YG++S  +D  I + KNLRVC DCH  IK +S V  R I++RD  RFHH+K
Sbjct: 744 CHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFK 803

Query: 713 DGVCSCKDYW 722
           +G CSC D+W
Sbjct: 804 NGQCSCGDFW 813



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 165/629 (26%), Positives = 288/629 (45%), Gaps = 76/629 (12%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHA---LKVFLKMLNEGLTIDRFSFPPI 123
           L  A  +F QIP+P  R  N  IRA S S  P  A   L ++ +ML   +  + ++FP  
Sbjct: 73  LSRAHHLFDQIPSPDVRTYNDLIRAYS-SSSPTAAADGLHLYRRMLRHRVAPNNYTFPFA 131

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           LKA +       G  +H      G  +D FV T L+ MY  C  + DA  +F  M  RD+
Sbjct: 132 LKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDL 191

Query: 184 VPWSVMIDGYFQNGLFDEVLN--LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           V W+ M+ GY  +G++   +   L  +M+M  + P+   L  +L   ++ G L+ G +VH
Sbjct: 192 VAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVH 251

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
            + I   +  + + +S L                 D VLL      TA++  Y++ G + 
Sbjct: 252 AYCIRACLHPNRNSKSKLT----------------DGVLL-----GTALLDMYAKCGSLL 290

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM---QVCGMKPDKVTMLSVIS 358
            AR +FD M  ++ + WSA+I G+   +   +A  LF  M    +C + P  +   S + 
Sbjct: 291 YARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALR 348

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           ACA L  L   +++H  + K+    DL   N+++ MYAK G ++ A  +F+ M  ++ +S
Sbjct: 349 ACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 408

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR-----EI 473
           ++++++ +  +G A  A + F KM+  +++P+  T + ++ ACSH   +  GR      I
Sbjct: 409 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 468

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH- 532
              + +E +I         ++D++ +   +  + ++   MP + ++V W +++A   +H 
Sbjct: 469 IRGLASETSI------CNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIAGYGIHG 521

Query: 533 -GEIELAEFAAKQLLQLDPDHDGALVLL-----SNIYAKDKRWQDV---GELRKSMKERG 583
            G+   A F     L   PD    + LL     S +  + K W  V   G       E  
Sbjct: 522 LGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHY 581

Query: 584 ILKERACSRIEMNNEVYEF----------------LTADRSHKQTDQIYEKLNEVISELK 627
           I      SR    +E YEF                L A R +K  D + +K++ +I EL 
Sbjct: 582 ICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNID-LGKKVSRMIQELG 640

Query: 628 PAG-----YVPDIHSALVDLEDEEKREVI 651
           P G      + +I+SA    ++  +  +I
Sbjct: 641 PEGTGNFVLLSNIYSAAGRFDEAAEVRII 669



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 193/418 (46%), Gaps = 49/418 (11%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT-IDRFSFPPIL 124
           SL YA  +F  +PA      +  I       R   A  +F  ML +GL  +   S    L
Sbjct: 288 SLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASAL 347

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           +A A  + L  G Q+H L  K G  +D      L+ MY   G I  A  +FD+M+ +D V
Sbjct: 348 RACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTV 407

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            +S ++ GY QNG  +E   +F++M+  NVEPD   +  ++ ACS    L +G   H  +
Sbjct: 408 SYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV 467

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           I   +A +  + + LI MYA CG +D+++ +F+ +  +++V    M++GY          
Sbjct: 468 IIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG--------- 518

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                            I G       +EA  LF EM   G  PD VT + ++SAC+H G
Sbjct: 519 -----------------IHGLG-----KEATALFLEMNNLGFPPDGVTFICLLSACSHSG 556

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAI--IDMYAKCGSLESAREVFERMR-RRNVISWTS 421
           ++ + +    ++  + +G   R+ + I  +D+ ++ G L+ A E  + M  R +V  W +
Sbjct: 557 LVIEGKHW-FHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVA 615

Query: 422 MINAFAIH-----GDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREI 473
           ++ A  ++     G   + +I       + + P G   F+ +    S AG  DE  E+
Sbjct: 616 LLGACRVYKNIDLGKKVSRMI-------QELGPEGTGNFVLLSNIYSAAGRFDEAAEV 666


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/624 (37%), Positives = 348/624 (55%), Gaps = 34/624 (5%)

Query: 101  ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
             LK+  ++L  G  ++  +F   L A +  E L+E   VH L    GF     V   LV 
Sbjct: 1133 GLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVT 1192

Query: 161  MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
            MYG  G +++A+ +   M   D V W+ +I G+ +N   +E +  ++ ++   +  + + 
Sbjct: 1193 MYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYIT 1252

Query: 221  LSKILSACSRAGNL-SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
            +  +L ACS   +L  +G  +H  I+      D +++++LITMYA C             
Sbjct: 1253 MVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKC------------- 1299

Query: 280  LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
                              G +  +  IFD +  K  I W+AM++  A +   +EALK+F 
Sbjct: 1300 ------------------GDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFG 1341

Query: 340  EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
            EM+  G+  D+ +    ++A A+L VL++ Q++H  + K  F  DL V NA +DMY KCG
Sbjct: 1342 EMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCG 1401

Query: 400  SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
             +    ++  +   R+ +SW  +I+AFA HG  + A   F++M      P+ VTF+ +L 
Sbjct: 1402 EMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLS 1461

Query: 460  ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
            AC+H GLVDEG   + SMT E+ + P  EH  C++DL GR+  L  A   ++ MP  PN 
Sbjct: 1462 ACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPND 1521

Query: 520  VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
            + W SL+AACR+HG +ELA   A+ LL+LDP  D A VL SN+ A   +W+DV  LRK M
Sbjct: 1522 LAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEM 1581

Query: 580  KERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
                I K+ ACS +++ ++V+ F   ++ H Q  +I  KL E++   K AGYVPD   AL
Sbjct: 1582 GSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFAL 1641

Query: 640  VDLEDEEKREVILW-HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
             D+ DEE++E  LW HSE+LAL +GLI++ + S +RI KNLRVC DCH+  K VS +  R
Sbjct: 1642 HDM-DEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGR 1700

Query: 699  EIVIRDRTRFHHYKDGVCSCKDYW 722
            +IV+RD  RFHH+  G CSC DYW
Sbjct: 1701 KIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 172/545 (31%), Positives = 271/545 (49%), Gaps = 32/545 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++F  +P          +   S + R + A  +F  M + G+  ++F++   L+A   
Sbjct: 84  ARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTS 143

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G+QV G   K  F  + FV++ LV  +  CGK+ DA  +F  M  RD+V W+ M
Sbjct: 144 LRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAM 203

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY   G  D+   +F  M    + PD   L  +L A +  G L     +H  I     
Sbjct: 204 IGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQ--- 260

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
                                +  G +D       +V+  +++ Y++ G +  A+ +   
Sbjct: 261 ---------------------LGYGSYD-------IVTGLLINAYAKNGSLRSAKDLRKG 292

Query: 310 MVEKDLICWSAMISGYA-ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           M++KDL   +A+I+GYA E  +  +AL LF EM    +  D V + S+++ CA+L     
Sbjct: 293 MLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFAL 352

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
             +IH +  K     D+ + NA+IDMYAK G +E A+  F+ M  +NVISWTS+I+ +A 
Sbjct: 353 GTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAK 412

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG    A+  + KM+ +   PN VTF+ +L+ACSH GL  EG E F +M N+YNI P+ E
Sbjct: 413 HGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAE 472

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HY CMVDLF R  LL EA  L+  +    N  +WG+++ A  ++G + L + AA  L  +
Sbjct: 473 HYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNM 532

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
            P++    V+L++IY+    W D  ++RK M+ER   K    S  +   +    L     
Sbjct: 533 QPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQATKKSIPLLQVQHG 592

Query: 609 HKQTD 613
             + D
Sbjct: 593 VSRRD 597



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 209/435 (48%), Gaps = 35/435 (8%)

Query: 106 LKMLNEGLT-IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA 164
           LK+L+   T +D   +  IL+     +   +G  +H      GFGSD  + T L+  Y  
Sbjct: 18  LKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVK 77

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
            G ++ AR +FD M  R +V W+ M+ GY QNG F++   LF +M+   V+ ++      
Sbjct: 78  VGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSA 137

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
           L AC+    L  G  V                          GC+   KG F    ++NL
Sbjct: 138 LRACTSLRCLDMGIQVQ-------------------------GCIQ--KGRF----VENL 166

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
            V +A+V  +S+ G++EDA  +F  M+E+D++ W+AMI GYA      ++  +F  M   
Sbjct: 167 FVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRG 226

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
           G+ PD  T+ SV+ A A  G L  A +IH  I +  +G    V   +I+ YAK GSL SA
Sbjct: 227 GLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSA 286

Query: 405 REVFERMRRRNVISWTSMINAFAIHG-DARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
           +++ + M ++++ S T++I  +A  G  + +AL  F +M   +I  + V    +L  C++
Sbjct: 287 KDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICAN 346

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
                 G +I A    +Y           ++D++ ++  + +A    + M    NV+ W 
Sbjct: 347 LASFALGTQIHA-FALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEME-EKNVISWT 404

Query: 524 SLMAACRVHGEIELA 538
           SL++    HG   +A
Sbjct: 405 SLISGYAKHGYGHMA 419



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 215/450 (47%), Gaps = 45/450 (10%)

Query: 99   KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL-EGMQVHGLGTKLGFGSDPFVQTG 157
            + A+ +F +M   G+  + F    ++ A +R+  +  EG QVHG   K G   D +V T 
Sbjct: 827  EEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTA 886

Query: 158  LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
            LV  YG+ G + +A+ +F++M   ++V W+ ++ GY  +G   EVLN+++ M+   V  +
Sbjct: 887  LVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGN 946

Query: 218  EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
            +   + + S+C    +   G  V   II                            G  D
Sbjct: 947  QNTFATVTSSCGLLEDQVLGYQVLGHIIQ--------------------------YGFED 980

Query: 278  KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
             V + N     +++S +S    VE+A  +FD M E D+I W+AMIS YA +   +E+L+ 
Sbjct: 981  SVSVAN-----SLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRC 1035

Query: 338  FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
            F+ M+    + +  T+ S++S C+ +  L   + IH  + K     ++ + N ++ +Y++
Sbjct: 1036 FHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSE 1095

Query: 398  CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
             G  E A  VF+ M  R++ISW SM+  +   G   + L    ++       N VTF   
Sbjct: 1096 AGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASA 1155

Query: 458  LYACSHAGLVDEGREIFASMTNEYNIPPKYEHY----GCMVDLFGRANLLREALELVETM 513
            L ACS+   + E + + A +     I   +  +      +V ++G+  ++ EA ++++TM
Sbjct: 1156 LAACSNPECLIESKIVHALI-----IVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTM 1210

Query: 514  PFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
            P  P+ V W +L+     H E E    A K
Sbjct: 1211 P-QPDRVTWNALIGG---HAENEEPNEAVK 1236



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 190/396 (47%), Gaps = 31/396 (7%)

Query: 67   LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
            +Y A  +F ++P          +   S S  P   L V+ +M  EG++ ++ +F  +  +
Sbjct: 897  VYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSS 956

Query: 127  IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
                E  + G QV G   + GF     V   L+ M+ +   + +A  +FD M+  DI+ W
Sbjct: 957  CGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISW 1016

Query: 187  SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
            + MI  Y  +GL  E L  F  M+  + E +   LS +LS CS   NL +G  +H  ++ 
Sbjct: 1017 NAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVV- 1075

Query: 247  NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
              + LD+                             N+ +   +++ YS AG+ EDA L+
Sbjct: 1076 -KLGLDS-----------------------------NVCICNTLLTLYSEAGRSEDAELV 1105

Query: 307  FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
            F  M E+DLI W++M++ Y ++    + LK+  E+   G   + VT  S ++AC++   L
Sbjct: 1106 FQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECL 1165

Query: 367  DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
             +++ +H  I    F   L V NA++ MY K G +  A++V + M + + ++W ++I   
Sbjct: 1166 IESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGH 1225

Query: 427  AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            A + +   A+  +  ++++ I  N +T + VL ACS
Sbjct: 1226 AENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 1261



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 200/442 (45%), Gaps = 45/442 (10%)

Query: 16   STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
            + ++    S   M+Q        SH+   Q + +   + T+ +L   TP       +   
Sbjct: 650  TVSVDEVGSALGMRQVEKPKTVGSHTGQKQWAPV-STITTASALINETPVE-----NFAE 703

Query: 76   QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI---DRFSFPPILKAIARAEG 132
            Q+     + SN   R   W        KVFL+  +    I   +  +FP  LK  +    
Sbjct: 704  QVKDDDLKTSNAGSR--RWGCLDGDIAKVFLQQQHTDYGIRCLNAVNFP--LKGFSEITS 759

Query: 133  LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
             + G  +H            F    L+ MY   G I  AR +FD+M +R+   WS M+ G
Sbjct: 760  QMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSG 819

Query: 193  YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS-YGEAVHEFIIDNNVAL 251
            Y + GL++E + LF +M    VEP+  +++ +++ACSR+G ++  G  VH F++   +  
Sbjct: 820  YVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILG 879

Query: 252  DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
            D ++ + L+  Y + G +  A+ LF+++   N+V  T+++ GYS +G             
Sbjct: 880  DVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSG------------- 926

Query: 312  EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
                              +P E L ++  M+  G+  ++ T  +V S+C  L       +
Sbjct: 927  ------------------NPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQ 968

Query: 372  IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
            +  +I +  F   + V N++I M++   S+E A  VF+ M   ++ISW +MI+A+A HG 
Sbjct: 969  VLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGL 1028

Query: 432  ARNALIFFNKMKDESIDPNGVT 453
             R +L  F+ M+    + N  T
Sbjct: 1029 CRESLRCFHWMRHLHNETNSTT 1050



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 145/316 (45%), Gaps = 43/316 (13%)

Query: 205 LFEEMKMSNVEP---DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
           L E +K+ +  P   D  +  KIL  C        G  +H  +I N    D HL + LI 
Sbjct: 14  LAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLII 73

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
            Y                                + G V  AR +FD M E+ ++ W+AM
Sbjct: 74  FYV-------------------------------KVGDVIAARNVFDGMPERSVVSWTAM 102

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF 381
           +SGY++N   ++A  LF++M+ CG+K ++ T  S + AC  L  LD   ++   I K  F
Sbjct: 103 VSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRF 162

Query: 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNK 441
             +L V +A++D ++KCG +E A  +F  M  R+V+SW +MI  +A+ G A ++   F  
Sbjct: 163 VENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRS 222

Query: 442 MKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT----NEYNIPPKYEHYGCMVDLF 497
           M    + P+  T   VL A +  G +    +I   +T      Y+I       G +++ +
Sbjct: 223 MLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVT-----GLLINAY 277

Query: 498 GRANLLREALELVETM 513
            +   LR A +L + M
Sbjct: 278 AKNGSLRSAKDLRKGM 293



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 163/366 (44%), Gaps = 36/366 (9%)

Query: 70   ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
            A  +   +P P     N  I   + +  P  A+K +  +  +G+  +  +   +L A + 
Sbjct: 1203 AKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSA 1262

Query: 130  AEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
             + LL+ GM +H      GF SD +V+  L+ MY  CG +  +  +FD +  +  + W+ 
Sbjct: 1263 PDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNA 1322

Query: 189  MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
            M+     +G  +E L +F EM+   V  D+   S  L+A +    L  G+ +H  +I   
Sbjct: 1323 MVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLG 1382

Query: 249  VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
               D H+ +  + MY  C                               G++ D   +  
Sbjct: 1383 FESDLHVTNAAMDMYGKC-------------------------------GEMHDVLKMLP 1411

Query: 309  QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
            Q + +  + W+ +IS +A +   Q+A + F+EM   G KPD VT +S++SAC H G++D+
Sbjct: 1412 QPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDE 1471

Query: 369  AQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINA 425
                +  + +  FG    + +   IID+  + G L  A    + M    N ++W S++ A
Sbjct: 1472 GLAYYDSMTRE-FGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAA 1530

Query: 426  FAIHGD 431
              IHG+
Sbjct: 1531 CRIHGN 1536


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/574 (37%), Positives = 343/574 (59%), Gaps = 4/574 (0%)

Query: 152 PFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
           PF +T L+  YG CG + DA  +FD +  +D V W+ ++     + L  +  ++   +  
Sbjct: 44  PFPKT-LIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILH 102

Query: 212 SNVEPDEMVLSKILSACSRAGNL--SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
             ++PD  V S ++ AC+  G++    G+ +H   + +    D  ++S+L+ MYA     
Sbjct: 103 EGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELP 162

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
           D  + +FD +   + +  TAM+SGY+R+G+  +A  +F +   K+L  W+A+ISG  ++ 
Sbjct: 163 DYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSG 222

Query: 330 HPQEALKLFNEMQVCGMK-PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
           +  +AL LF EM+  G+   D + + SV+ ACA+  V +  +++H  +    +   L ++
Sbjct: 223 NANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFIS 282

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           NA++DMYAKC  + +A+ +F  MRR++V+SWTS+I   A HG A  AL  ++ M    + 
Sbjct: 283 NALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVK 342

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
           PN VTF+G++YACSH GLV +GR +F SM  ++ I P  +HY C++DLF R+  L EA  
Sbjct: 343 PNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAEN 402

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568
           L+ TMP  P+   W +L++AC+ HG  ++A   A  LL L P+   + +LLSNIYA    
Sbjct: 403 LIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDPSSYILLSNIYAGAGM 462

Query: 569 WQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628
           W++V  +RK M  + + K    S +++  E   F   + S    D+I   + ++ SE++ 
Sbjct: 463 WENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKDEILGLMTKLDSEMRR 522

Query: 629 AGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNF 688
            GYVPD  S L+D++ +EK   + WHSE+LAL YGL+ +   + IRIVKNLRVC DCH  
Sbjct: 523 RGYVPDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTTIRIVKNLRVCGDCHTV 582

Query: 689 IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +KL+S + +REI +RD  R+HH+KDG CSC D+W
Sbjct: 583 LKLISAITSREIYVRDVKRYHHFKDGKCSCNDFW 616



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 126/530 (23%), Positives = 228/530 (43%), Gaps = 103/530 (19%)

Query: 29  KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKF 88
           K+ HAQI+K   +HH       K L+ ++         L  AL +F  +P          
Sbjct: 28  KKLHAQIIKSGLNHHHP---FPKTLIDAYG----KCGLLKDALKLFDALPQQDHVAWATV 80

Query: 89  IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR--AEGLLEGMQVHGLGTKL 146
           + A + S+ P  A  + L +L+EGL  D F F  ++KA A   +  +  G Q+H      
Sbjct: 81  LSACNLSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLS 140

Query: 147 GFGSDPFVQTGLVGMYGA-------------------------------CGKILDARLMF 175
            F  D  V++ LV MY                                  G+ L+A  +F
Sbjct: 141 PFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELF 200

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE-PDEMVLSKILSACSRAGNL 234
            +  ++++  W+ +I G  Q+G  ++ L LF EM+   V   D +VLS ++ AC+ +   
Sbjct: 201 RESPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVR 260

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             G+ VH  +I         + + L+ MYA C  +  AK +F ++  K++V  T+++ G 
Sbjct: 261 ELGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGT 320

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
           ++ G  E                               EAL L+++M + G+KP++VT +
Sbjct: 321 AQHGLAE-------------------------------EALTLYDDMVLAGVKPNEVTFV 349

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERMR 412
            +I AC+H+G++ + + +   + ++ FG    L+    ++D++++ G L+ A  +   M 
Sbjct: 350 GLIYACSHVGLVSKGRALFKSMVED-FGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMP 408

Query: 413 -RRNVISWTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGL---- 466
            + +  +W ++++A   HG+ + A+   + + D +  DP+    +  +YA   AG+    
Sbjct: 409 VKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDPSSYILLSNIYA--GAGMWENV 466

Query: 467 --------------------VDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
                               VD GRE       E + P K E  G M  L
Sbjct: 467 SMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKDEILGLMTKL 516



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 43/197 (21%)

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
           A+++H  I K+           +ID Y KCG L+ A ++F+ + +++ ++W ++++A  +
Sbjct: 27  AKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNL 86

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG----------------------- 465
                 A      +  E + P+   F  ++ AC++ G                       
Sbjct: 87  SNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDD 146

Query: 466 --------------LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
                         L D GR +F S+    +I      +  M+  + R+    EALEL  
Sbjct: 147 VVKSSLVDMYAKFELPDYGRAVFDSIFELSSIS-----WTAMISGYARSGRKLEALELFR 201

Query: 512 TMPFAPNVVIWGSLMAA 528
             PF  N+  W +L++ 
Sbjct: 202 ESPFK-NLYAWTALISG 217


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/655 (36%), Positives = 366/655 (55%), Gaps = 37/655 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++F Q+        N  +  +  +     AL++F         + + ++  ++K  A 
Sbjct: 255 AKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCAN 314

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM-SYRDIVPWSV 188
            + L    Q+H    K GF SD  V T ++  Y  CG++ DA  +F  M   +++V W+ 
Sbjct: 315 LKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTA 374

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI G  QN        LF  M+  NV+P+E   S +L+A            +H  II  N
Sbjct: 375 MIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPI----LLPQIHAQIIKTN 430

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
                H  S                            V TA+++ YS+ G  E+A  IF 
Sbjct: 431 YQ---HAPS----------------------------VGTALLASYSKLGNTEEALSIFK 459

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH-LGVLD 367
            +  KD++ WSAM+S Y++      A  +F +M + GMKP++ T+ S I ACA     +D
Sbjct: 460 MIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGID 519

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           Q ++ H    K  +   + V +A++ MYA+ GS++SAR VFER   R+++SW SMI+ +A
Sbjct: 520 QGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYA 579

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            HG ++ AL  F +M+   I+ +G TF+ V+  C+HAGLV EG++ F SM  ++NI P  
Sbjct: 580 QHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTM 639

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
           EHY CMVDL+ RA  L E + L+E MPF    ++W +L+ ACRVH  +EL + AA++LL 
Sbjct: 640 EHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLL 699

Query: 548 LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
           L+PD     VLLSNIYA   RW++  E+RK M  + + KE  CS I++ N+V+ F+  D+
Sbjct: 700 LEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDK 759

Query: 608 SHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS 667
           SH  ++QIY KL  + + LK  GY P+    L D+ +E+K  +++ HSE+LAL +GLI++
Sbjct: 760 SHPLSEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEEQKETMLVMHSERLALAFGLIAT 819

Query: 668 KKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              + ++IVKNLRVC DCH  +K+VS +  REI++RD +RFHH+  G CSC D+W
Sbjct: 820 PPRTPLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 168/340 (49%), Gaps = 33/340 (9%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFG-SDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
           +LK        + G Q+H L  K GF  ++  V T LV MY  CG + D R++F+ M  R
Sbjct: 105 VLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKR 164

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           ++V W+ ++ GY Q     +V+ LF  M+   V P+    + +LSA +  G +  G  VH
Sbjct: 165 NVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVH 224

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
              +         + ++LI MY+ CG ++ AK                            
Sbjct: 225 AQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKA--------------------------- 257

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
               +F QM  +D++ W+ +++G   N H  EAL+LF++ +    K  + T  +VI  CA
Sbjct: 258 ----VFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCA 313

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWT 420
           +L  L  A+++H  + K+ F  D  V  AI+D Y+KCG L+ A  +F  M   +NV+SWT
Sbjct: 314 NLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWT 373

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +MI     + D   A   F++M+++++ PN  T+  VL A
Sbjct: 374 AMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTA 413



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 134/253 (52%), Gaps = 1/253 (0%)

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
           V TA+V  Y + G VED R++F+ M +++++ W+++++GY +     + + LF  M+  G
Sbjct: 137 VGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEG 196

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
           + P+  T  SV+SA A  G +D  +R+H    K      + V N++I+MY+KCG +E A+
Sbjct: 197 VWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAK 256

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
            VF +M  R+++SW +++    ++     AL  F+  +      +  T+  V+  C++  
Sbjct: 257 AVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLK 316

Query: 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
            +   R++ + +  ++           ++D + +   L +A  +   MP + NVV W ++
Sbjct: 317 QLALARQLHSCVL-KHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAM 375

Query: 526 MAACRVHGEIELA 538
           +  C  + +I LA
Sbjct: 376 IGGCIQNADIPLA 388



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 127/271 (46%), Gaps = 10/271 (3%)

Query: 9   KPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY 68
           KP     ST +++   +  + Q HAQI+K ++ H      +   LL S+S    T     
Sbjct: 401 KPNEFTYSTVLTASIPIL-LPQIHAQIIKTNYQHAPS---VGTALLASYSKLGNTEE--- 453

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
            ALSIF  I        +  +   S +     A  VF+KM  +G+  + F+    + A A
Sbjct: 454 -ALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACA 512

Query: 129 R-AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
               G+ +G Q H +  K  +     V + LV MY   G I  AR++F++ + RD+V W+
Sbjct: 513 SPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWN 572

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE-FIID 246
            MI GY Q+G   E L+ F +M+   +E D      ++  C+ AG +  G+   +  ++D
Sbjct: 573 SMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMD 632

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           +N++      S ++ +Y+  G +D    L +
Sbjct: 633 HNISPTMEHYSCMVDLYSRAGKLDETMNLIE 663



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 35/197 (17%)

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           ++VCG+ PD+V+   +   C   G  D+A+              + V  A++DMY KCG 
Sbjct: 106 LKVCGLIPDRVSGEQLHCLCVKCG-FDRAE--------------VGVGTALVDMYMKCGG 150

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E  R VFE M +RNV++WTS++  +       + +  F +M+ E + PN  TF  VL A
Sbjct: 151 VEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSA 210

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGC---------MVDLFGRANLLREALELVE 511
            +  G VD GR + A              +GC         +++++ +  L+ EA  +  
Sbjct: 211 VASQGAVDLGRRVHAQSVK----------FGCRSTVFVCNSLINMYSKCGLVEEAKAVFR 260

Query: 512 TMPFAPNVVIWGSLMAA 528
            M    ++V W +LMA 
Sbjct: 261 QME-TRDMVSWNTLMAG 276


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/583 (38%), Positives = 343/583 (58%), Gaps = 7/583 (1%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           AL++F  IP P     N  + A++   R   AL+    M  +   ++ +SF   L A A 
Sbjct: 100 ALALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACAS 159

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            +    G QVH L TK   GSD ++ T LV MY  C +  +A+ +FD M  R+IV W+ +
Sbjct: 160 EKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSL 219

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN- 248
           I  Y QNG  DE L LF  M      PDE+ L+ ++SAC+       G  VH  ++ ++ 
Sbjct: 220 ITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDR 279

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D  L + L+ MYA CG    AK +FD++ ++++V  T+M++GY+++  V DA+ +F 
Sbjct: 280 FREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFL 339

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           QMVEK+++ W+ +I+ YA N+  +EAL+LF  ++   + P   T  +V++ACA+L  L  
Sbjct: 340 QMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQL 399

Query: 369 AQRIHLYIDKNAF------GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
            Q+ H+++ K  F        D+ V N+++DMY K GS+    +VFERM  R+ +SW +M
Sbjct: 400 GQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAM 459

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I  +A +G A++AL+ F +M   +  P+ VT IGVL AC H+GLV EGR  F SMT ++ 
Sbjct: 460 IVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHG 519

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           I P  +HY CM+DL GRA  L+E  EL+E MP  P+ V+W SL+ ACR+H  I++ E+AA
Sbjct: 520 IIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAA 579

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
            +L +LDPD+ G  VLLSN+YA+  +W DV  +R+SMK RG+ K+  CS IE+  +V  F
Sbjct: 580 GKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIEIGRKVNVF 639

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDE 645
           L  D  H   ++I++ L  +  ++       +I   L++   E
Sbjct: 640 LARDNIHPCRNEIHDTLRIIQMQMSRMSIDAEIADDLMNFSSE 682



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 204/467 (43%), Gaps = 100/467 (21%)

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207
           F  + F+   L+  Y   G + DAR +FD M +R+   ++ ++    + G  D+ L LF 
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105

Query: 208 EMK--------------------------MSNVEPDEMVL-----SKILSACSRAGNLSY 236
            +                           ++ +  D+ VL     +  LSAC+       
Sbjct: 106 AIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRT 165

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           GE VH  +  ++   D ++ + L+ MYA C   + A+ +FD +  +N+V   ++++ Y +
Sbjct: 166 GEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQ 225

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
            G V+                               EAL LF  M   G  PD+VT+ SV
Sbjct: 226 NGPVD-------------------------------EALALFVRMMKDGFVPDEVTLASV 254

Query: 357 ISACAHLGVLDQAQRIHLYIDK-NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           +SACA L    + +++H  + K + F  D+ +NNA++DMYAKCG    A+ VF+RM  R+
Sbjct: 255 MSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRS 314

Query: 416 VISWTSMINAFAIH---GDAR----------------------------NALIFFNKMKD 444
           V+S TSMI  +A     GDA+                             AL  F ++K 
Sbjct: 315 VVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKR 374

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE---YNIPPKYEHY--GCMVDLFGR 499
           ES+ P   T+  VL AC++   +  G++    +  E   ++  P+ + +    +VD++ +
Sbjct: 375 ESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLK 434

Query: 500 ANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
              + +  ++ E M    NV  W +++     +G  + A    +++L
Sbjct: 435 TGSISDGAKVFERMAARDNVS-WNAMIVGYAQNGRAKDALLLFERML 480


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/621 (36%), Positives = 362/621 (58%), Gaps = 20/621 (3%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGS---DPFVQTGLVGMYGACGKILDARLMFD 176
           F  +L++ AR   L  G ++H +    G  S   + F+   L  +Y +CG    AR +F 
Sbjct: 18  FRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLFY 77

Query: 177 KM--SYRDIVPWSVMIDGYFQNGLF-DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           ++  S++D+  W+ ++    Q+G    E    F+EM+   V  D++ +  +   C+R  +
Sbjct: 78  QIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVED 137

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           L  G      ++   + L   + + ++ MY  CG ++  + +F ++  +N+V  + ++ G
Sbjct: 138 LGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEG 197

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPDKVT 352
             +   VE+ R++FD+M E++ + W+ MI+GY  N   +E   L +EM +   +  + VT
Sbjct: 198 VVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVT 257

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR--VNNAIIDMYAKCGSLESAREVFER 410
           + S++SACA  G +   + +H+Y  K   G ++   V  A++DMYAKCG ++ A +VF+ 
Sbjct: 258 LSSILSACAQSGDVLMGRWVHVYALK-GMGREMHIMVGTALVDMYAKCGPIDMAFKVFKY 316

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           + +RNV++W +M+   A+HG  +  L  F KM +E+  P+ +TF+ VL ACSH+GLVD+G
Sbjct: 317 LPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEA-KPDDLTFMAVLSACSHSGLVDQG 375

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
              F S+ +EY   PK EHY CMVD+ GRA  L EA+ L++ MP  PN V+ GSL+ +C 
Sbjct: 376 YHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSCN 435

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
            HG+++L E   ++L+Q+D  +    VLLSN+Y  + +      LR+ +K +GI K    
Sbjct: 436 AHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIRKVPGV 495

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLED------ 644
           S I +   +++F   D+SH  T +IY  LN +I  L+ AGYVP+  + +    D      
Sbjct: 496 SSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSDGREGSS 555

Query: 645 ---EEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIV 701
              EEK + +  HSEKLA+C+G IS+K  + + I KNLR+C+DCH+ IK+VSK+Y REIV
Sbjct: 556 EEMEEKEQALFLHSEKLAVCFGHISTKPGAPLYIFKNLRICQDCHSAIKIVSKIYNREIV 615

Query: 702 IRDRTRFHHYKDGVCSCKDYW 722
           IRDR RFH +K G CSC DYW
Sbjct: 616 IRDRNRFHCFKHGSCSCSDYW 636



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 202/466 (43%), Gaps = 80/466 (17%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP 64
           S P +  +L  S A +S  SL+  K+ HA IL    +  S N+ LL  L   ++    T 
Sbjct: 13  SLPARFRSLLRSCARNS--SLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTS 70

Query: 65  SSLYYALSIFSQIPAPPSRVSN---KFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
           S    A  +F QIP     V++        +    +P      F +M  EG+ +D  +  
Sbjct: 71  S----ARHLFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMI 126

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
            +     R E L  G Q  G   K+G G    V   ++ MY  CG + + R +F +M+ R
Sbjct: 127 SVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNER 186

Query: 182 DIVPWS-------------------------------VMIDGYFQNGLFDEVLNLFEEMK 210
           ++V WS                               +MI GY  NG   E   L +EM 
Sbjct: 187 NVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMV 246

Query: 211 MS-NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ--STLITMYANCG 267
           +   +  + + LS ILSAC+++G++  G  VH + +   +  + H+   + L+ MYA CG
Sbjct: 247 LRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYAL-KGMGREMHIMVGTALVDMYAKCG 305

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
            +DMA  +F  +  +N+V   AM+ G +  G+ +    IF +M+E+              
Sbjct: 306 PIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEE-------------- 351

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
                              KPD +T ++V+SAC+H G++DQ       ++ + +G   ++
Sbjct: 352 ------------------AKPDDLTFMAVLSACSHSGLVDQGYHYFRSLE-SEYGTTPKI 392

Query: 388 NN--AIIDMYAKCGSLESAREVFERMRR-RNVISWTSMINAFAIHG 430
            +   ++D+  + G LE A  + ++M    N +   S++ +   HG
Sbjct: 393 EHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSCNAHG 438


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/662 (34%), Positives = 352/662 (53%), Gaps = 49/662 (7%)

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
           T   S +Y+A   F   P                +HR  H  K  +++  E   ID F+ 
Sbjct: 18  TLACSGIYFATRAFCDKP----------------NHRIVHKDKNLVRV--ERDLIDVFTL 59

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
             +L+  A+   LL G   HGL    G  +D      L+ +Y  CG+   AR +FD MS 
Sbjct: 60  HELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAMSV 119

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           R I+ W+ MI GY  N    E L LF  M     +  E  LS  L AC+    +   + +
Sbjct: 120 RSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQL 179

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H   I   +ALD+                             +  V TA +  Y++   +
Sbjct: 180 HTIAI--KLALDS-----------------------------SSFVGTAFLDVYAKCNMI 208

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
           +DA  +F+ M EK  + WS++ +G+ +N   +E L LF   Q  GM+  + T+ S++S C
Sbjct: 209 KDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTC 268

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           A L ++ +  ++H  I K+ F  +L V  +++D+YAKCG +E + EVF  M  +NV+ W 
Sbjct: 269 ASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWN 328

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +MI +F+ H  +  A+I F KM+   I PN VT++ +L ACSH GLV+EGR  F  + ++
Sbjct: 329 AMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSD 388

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
               P   HY CMVD+ GR+    EA +L++ MPF P   +WGSL+ + R+H  I LA  
Sbjct: 389 RTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARI 448

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
           AA+QL +L+P++ G  VLLSN+YA    W++V   RK +++ G  KE   S IE   +++
Sbjct: 449 AAEQLFRLEPENGGNHVLLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIH 508

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
            F+  +R H     +Y KL E+  E++   +  +    L D+  ++K E++  HSEKLA 
Sbjct: 509 VFVAGEREHPGITDVYNKLEEIYHEMRKISHRANTQCDLHDVHADQKEELLKHHSEKLAF 568

Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
            +GLIS   +  I I KNLR+C DCH+F+K+VS +  R++++RD  RFHH+KDG CSC D
Sbjct: 569 AFGLISLPPNIPITIYKNLRICGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCSCGD 628

Query: 721 YW 722
           +W
Sbjct: 629 FW 630



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 122/274 (44%), Gaps = 9/274 (3%)

Query: 46  NSLLLKLLLTSFSLPTTTPSSLYY-------ALSIFSQIPAPPSRVSNKFIRAISWSHRP 98
           +++ +KL L S S   T    +Y        A  +F  +P   S   +        +   
Sbjct: 180 HTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLH 239

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           +  L +F     EG+ +  F+   IL   A    ++EG QVH +  K GF  + FV T L
Sbjct: 240 EEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSL 299

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           V +Y  CG+I  +  +F  M  +++V W+ MI  + ++    E + LFE+M+   + P+E
Sbjct: 300 VDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNE 359

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ-STLITMYANCGCMDMAKGLFD 277
           +    ILSACS  G +  G      ++ +  A    L  S ++ +    G  D A  L D
Sbjct: 360 VTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLD 419

Query: 278 KVLLKNLVVSTAMVSGYSRAGQ-VEDARLIFDQM 310
           K+  +        + G SR  + +  AR+  +Q+
Sbjct: 420 KMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQL 453


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/610 (35%), Positives = 343/610 (56%), Gaps = 33/610 (5%)

Query: 115 IDRFSFPPILKAIARAEGLLEGMQ-VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
            D  S  P+ +A+ R+   L  +Q VH      G      + T L+ +    G I  AR 
Sbjct: 85  FDTQSHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARR 144

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +F  +   D   +  ++    + G   + +  +  M  S         + ++ AC+    
Sbjct: 145 LFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSA 204

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           L  G+ +H  ++      D ++Q+ LI +YA                             
Sbjct: 205 LRLGKEIHSHVMVCGYGSDMYVQAALIALYA----------------------------- 235

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
             +A  ++ A+ +FD M ++ +I W+++ISGY +N  PQE++ LF+ M   G +PD  T+
Sbjct: 236 --KASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATI 293

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
           +S++S+C+ LG LD    +H Y D N F  ++ +  ++I+MY +CG++  AREVF+ M+ 
Sbjct: 294 VSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKE 353

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           RNV++WT+MI+ + +HG  R A+  F +M+     PN +TF+ VL AC+H+GL+D+GR +
Sbjct: 354 RNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRV 413

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET-MPFAPNVVIWGSLMAACRVH 532
           F+SM   Y + P  EH  CMVD+FGRA LL +A + ++  +P  P   +W S++ ACR+H
Sbjct: 414 FSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMH 473

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
              +L    A+ +L ++P++ G  V+LSNIYA   R   V  +R  M  R + K+   S 
Sbjct: 474 RNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYST 533

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652
           IE+N + Y F   D+SH QT+ IY  L+E++     +GYVP   S + DLE+EE+   + 
Sbjct: 534 IEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALR 593

Query: 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712
           +HSEKLAL +GL+ + +   IRIVKNLR+CEDCH+ IK +S +  REI++RD+ RFHH+K
Sbjct: 594 YHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFK 653

Query: 713 DGVCSCKDYW 722
           DG CSC DYW
Sbjct: 654 DGSCSCLDYW 663



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/415 (30%), Positives = 209/415 (50%), Gaps = 43/415 (10%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           + S   L +++Q HA I+ +S  H S+ SLL KL+    SL   T  S+ YA  +F  +P
Sbjct: 98  LRSGPRLRNLQQVHAHII-VSGLHRSR-SLLTKLI----SL-VCTAGSITYARRLFPTVP 150

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P S + +  ++  S        +  + +ML  G     ++F  ++KA A    L  G +
Sbjct: 151 NPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKE 210

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H      G+GSD +VQ  L+ +Y     +  A+ +FD M  R I+ W+ +I GY QNGL
Sbjct: 211 IHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGL 270

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
             E + LF  M  S  +PD   +  +LS+CS+ G L +G  +H++   N   L+  L ++
Sbjct: 271 PQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTS 330

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           LI MY  CG +  A+ +FD +  +N+V  TAM+SGY                        
Sbjct: 331 LINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYG----------------------- 367

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
              + GY      ++A++LF EM+  G +P+ +T ++V+SACAH G++D  +R+   + K
Sbjct: 368 ---MHGYG-----RQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSM-K 418

Query: 379 NAFG--GDLRVNNAIIDMYAKCGSLESAREVFERM--RRRNVISWTSMINAFAIH 429
            A+G    +  N  ++DM+ + G L  A +  ++   +      WTSM+ A  +H
Sbjct: 419 EAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMH 473


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/622 (37%), Positives = 354/622 (56%), Gaps = 31/622 (4%)

Query: 101  ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
            + ++F +M  EG+  ++F++P IL+       L  G Q+H    K GF  + +V + L+ 
Sbjct: 447  SFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLID 506

Query: 161  MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
            MY   G++  A  +  ++   D+V W+ MI GY Q+ +F E L LFEEM+   ++ D + 
Sbjct: 507  MYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIG 566

Query: 221  LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
             +  +SAC+    L  G+ +H                              A G      
Sbjct: 567  FASAISACAGIRALRQGQQIH--------------------------AQSYAAGFG---- 596

Query: 281  LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
              +L ++ A++S Y+R G++++A L F+++ +K+ I W++++SG A++ + +EAL++F  
Sbjct: 597  -ADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVR 655

Query: 341  MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
            M     + +  T  S ISA A L  + Q Q+IH  + K  +  +  V+N++I +YAK GS
Sbjct: 656  MLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGS 715

Query: 401  LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
            +  A   F  M  RNVISW +MI  ++ HG    AL  F +MK   I PN VTF+GVL A
Sbjct: 716  ISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSA 775

Query: 461  CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
            CSH GLV EG + F SM   +++ PK EHY C+VDL GRA  L  A+E ++ MP   + +
Sbjct: 776  CSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAM 835

Query: 521  IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
            IW +L++AC +H  IE+ E AA  LL+L+P+     VL+SNIYA  ++W      RK MK
Sbjct: 836  IWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMK 895

Query: 581  ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
            + G+ KE   S IE+ N V+ F   D+ H  T+QIYE +  +       GYV D  S L 
Sbjct: 896  DXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLN 955

Query: 641  DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
            + E  +K  +   HSEKLA+ +GL+S   +  IR++KNLRVC DCHN+IK VSK+  R I
Sbjct: 956  ESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSI 1015

Query: 701  VIRDRTRFHHYKDGVCSCKDYW 722
            ++RD  RFHH+  GVCSCKD+W
Sbjct: 1016 IVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 142/528 (26%), Positives = 234/528 (44%), Gaps = 47/528 (8%)

Query: 13  LPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYY--- 69
            PT   +SS  S +    T  Q+ +L    H    L++K    S +       +LY    
Sbjct: 258 FPTPYVLSSVLSAS----TKIQLFELGEQLHC---LVIKWGFHSETYVCNGLVALYSRSR 310

Query: 70  ----ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
               A  IFS + +      N  I  +        AL++F KM  + L  D  +   +L 
Sbjct: 311 KLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLS 370

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A A    L +GMQ+H    K G  +D  ++  L+ +Y  C  +  A   F      +IV 
Sbjct: 371 ACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVL 430

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+VM+  Y Q     +   +F +M+M  + P++     IL  C+  G L  GE +H  +I
Sbjct: 431 WNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI 490

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
                L+ ++ S LI MYA  G + +A  +  ++   ++V  TAM++GY           
Sbjct: 491 KTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGY----------- 539

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
                V+ D+                 EAL+LF EM+  G++ D +   S ISACA +  
Sbjct: 540 -----VQHDMF---------------SEALQLFEEMEYRGIQFDNIGFASAISACAGIRA 579

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L Q Q+IH       FG DL +NNA+I +YA+CG ++ A   FE++  +N ISW S+++ 
Sbjct: 580 LRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSG 639

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
            A  G    AL  F +M     + N  T+   + A +    + +G++I  SM  +     
Sbjct: 640 LAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIH-SMVLKTGYDS 698

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           + E    ++ L+ ++  + +A      M    NV+ W +++     HG
Sbjct: 699 EREVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGYSQHG 745



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/466 (26%), Positives = 219/466 (46%), Gaps = 38/466 (8%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A+ +F +         NK I              +F +ML EG+T + ++F  +LKA   
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG 171

Query: 130 AEGLLEGM-QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
            +     + QVH      GF S P V   L+ +Y   G I  A+ +F+ +  +DIV W  
Sbjct: 172 GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVA 231

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI G  QNGL +E + LF +M  S + P   VLS +LSA ++      GE +H       
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLH------- 284

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
                              C+ +  G   +  + N      +V+ YSR+ ++  A  IF 
Sbjct: 285 -------------------CLVIKWGFHSETYVCN-----GLVALYSRSRKLISAERIFS 320

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
            M  +D + ++++ISG  +      AL+LF +MQ   +KPD +T+ S++SACA +G L +
Sbjct: 321 TMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHK 380

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
             ++H +  K     D+ +  +++D+Y+KC  +E+A + F      N++ W  M+ A+  
Sbjct: 381 GMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQ 440

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
             +  ++   F +M+ E + PN  T+  +L  C+  G +  G +I    T+      +  
Sbjct: 441 LDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIH---THVIKTGFQLN 497

Query: 489 HYGC--MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
            Y C  ++D++ +   L  AL ++  +P   +VV W +++A    H
Sbjct: 498 VYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQH 542



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 197/425 (46%), Gaps = 37/425 (8%)

Query: 118 FSFPPILKAIARAEGLLE----GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
           F  P +L ++  A   ++    G Q+H L  K GF S+ +V  GLV +Y    K++ A  
Sbjct: 258 FPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAER 317

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +F  M+ RD V ++ +I G  Q G  D  L LF +M+   ++PD + ++ +LSAC+  G 
Sbjct: 318 IFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGA 377

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           L  G  +H   I   ++ D  L+ +L+ +Y+ C  ++ A   F     +N+V+   M+  
Sbjct: 378 LHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVA 437

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           Y +   + D                               + ++F +MQ+ GM P++ T 
Sbjct: 438 YGQLDNLSD-------------------------------SFEIFRQMQMEGMIPNQFTY 466

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
            S++  C  LG L   ++IH ++ K  F  ++ V + +IDMYAK G L  A  +  R+  
Sbjct: 467 PSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPE 526

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
            +V+SWT+MI  +  H     AL  F +M+   I  + + F   + AC+    + +G++I
Sbjct: 527 DDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQI 586

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            A  +              ++ L+ R   ++EA    E +    N+  W SL++     G
Sbjct: 587 HAQ-SYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNIS-WNSLVSGLAQSG 644

Query: 534 EIELA 538
             E A
Sbjct: 645 YFEEA 649



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 195/433 (45%), Gaps = 55/433 (12%)

Query: 5   SQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP 64
           +Q T P  L T T++ +   L   +Q H  ++K   +    N  +  +L+  ++      
Sbjct: 462 NQFTYPSILRTCTSLGA---LYLGEQIHTHVIK---TGFQLNVYVCSVLIDMYA----KY 511

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
             L  AL I  ++P          I           AL++F +M   G+  D   F   +
Sbjct: 512 GQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAI 571

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            A A    L +G Q+H      GFG+D  +   L+ +Y  CG+I +A L F+K+  ++ +
Sbjct: 572 SACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNI 631

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ ++ G  Q+G F+E L +F  M  +  E +       +SA +   N+  G+ +H  +
Sbjct: 632 SWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMV 691

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           +      +  + ++LI++YA  G +  A   F+ +  +N++   AM++GYS+ G      
Sbjct: 692 LKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHG------ 745

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                       C               EAL+LF EM+VCG+ P+ VT + V+SAC+H+G
Sbjct: 746 ------------C-------------GMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIG 780

Query: 365 VLDQAQ-------RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNV 416
           ++ +         +IH  + K+           ++D+  + G L+ A E  + M    + 
Sbjct: 781 LVKEGLDYFESMFKIHDLVPKSEH------YVCVVDLLGRAGQLDRAMEYIKEMPIPADA 834

Query: 417 ISWTSMINAFAIH 429
           + W ++++A  IH
Sbjct: 835 MIWRTLLSACVIH 847



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 191/426 (44%), Gaps = 42/426 (9%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           M   G+  +  ++  +L+    +  L E M++H   +K GF  +P +   LV  Y   G 
Sbjct: 49  MEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGD 108

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
              A  +FD+ S R +  W+ MI  +       +V  LF  M    + P+    + +L A
Sbjct: 109 QHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKA 168

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           C                +  ++A +   Q    T Y          G     L+ NL++ 
Sbjct: 169 C----------------VGGDIAFNYVKQVHSRTFY---------YGFDSSPLVANLLID 203

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
                 YS+ G +E A+ +F+ +  KD++ W AMISG ++N   +EA+ LF +M    + 
Sbjct: 204 L-----YSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIF 258

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           P    + SV+SA   + + +  +++H  + K  F  +  V N ++ +Y++   L SA  +
Sbjct: 259 PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERI 318

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F  M  R+ +S+ S+I+     G +  AL  F KM+ + + P+ +T   +L AC+  G +
Sbjct: 319 FSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGAL 378

Query: 468 DEGRE-----IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
            +G +     I A M+ +  +       G ++DL+ +   +  A +         N+V+W
Sbjct: 379 HKGMQLHSHAIKAGMSADIILE------GSLLDLYSKCADVETAHKFFLXTE-TENIVLW 431

Query: 523 GSLMAA 528
             ++ A
Sbjct: 432 NVMLVA 437



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 129/297 (43%), Gaps = 16/297 (5%)

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
           ++V  Y R G    A  +FD+   + +  W+ MI  +       +   LF  M   G+ P
Sbjct: 98  SLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITP 157

Query: 349 DKVTMLSVISACAHLGV-LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           +  T   V+ AC    +  +  +++H       F     V N +ID+Y+K G +ESA++V
Sbjct: 158 NGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKV 217

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F  +  +++++W +MI+  + +G    A++ F  M    I P       VL A +   L 
Sbjct: 218 FNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLF 277

Query: 468 DEGREIFASMTNEYNIPPKYEHYGC--MVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
           + G ++   +  ++      E Y C  +V L+ R+  L  A  +  TM  + + V + SL
Sbjct: 278 ELGEQLHC-LVIKWGFHS--ETYVCNGLVALYSRSRKLISAERIFSTMN-SRDGVSYNSL 333

Query: 526 MAACRVHG--EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           ++     G  +  L  F   Q   L PD      LLS   +       VG L K M+
Sbjct: 334 ISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACAS-------VGALHKGMQ 383



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 1/199 (0%)

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394
           ++L N M+  G++ +    L ++  C   G L +  R+H  I K+ F G+  + ++++D 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           Y + G    A +VF+    R+V SW  MI+ F            F +M  E I PNG TF
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
            GVL AC    +     +   S T  Y           ++DL+ +   +  A ++   + 
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 515 FAPNVVIWGSLMAACRVHG 533
              ++V W ++++    +G
Sbjct: 223 M-KDIVTWVAMISGLSQNG 240


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/622 (36%), Positives = 344/622 (55%), Gaps = 66/622 (10%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A++ F +M N+G+  + F+FP IL A         G QVHG     GFG + +VQ+ LV 
Sbjct: 220 AIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVD 279

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG +  AR++ D M   D+V W+ MI G   +G  +E L LF +M   ++  D+  
Sbjct: 280 MYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFT 339

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
              +L + +   NL  GE+VH                T+ T +  C              
Sbjct: 340 YPSVLKSLASCKNLKIGESVHSL--------------TIKTGFDACK------------- 372

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                VS A+V  Y++ G +  A  +F+++++KD+I W+++++GY  N   ++AL+LF +
Sbjct: 373 ----TVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCD 428

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M+   +  D+  +  V SACA L V++  +++H    K++ G  L   N++I MYAKCG 
Sbjct: 429 MRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGC 488

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           LE A  V + M  RNVISWT++I  +A                                 
Sbjct: 489 LEDAIRVXDSMETRNVISWTAIIVGYA--------------------------------- 515

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
               GLV+ G+  F SM   Y I P  + Y CM+DL GRA  + EA  L+  M   P+  
Sbjct: 516 --QNGLVETGQSYFESMEKVYGIKPASDRYACMIDLLGRAGKINEAEHLLNRMDVEPDAT 573

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           IW SL++ACRVHG +EL E A K L++L+P +    VLLSN+++   RW+D   +R++MK
Sbjct: 574 IWKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMK 633

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
             GI +E   S IEM ++V+ F++ DRSH    +IY K++E++  +K AG+VPD++ AL 
Sbjct: 634 TMGIXQEPGYSWIEMKSQVHTFISEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALR 693

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D+++E K   + +HSEKLA+ +GL++  K + IRI KNLRVC DCH+ +K +S ++ R I
Sbjct: 694 DMDEEAKERSLAYHSEKLAVAFGLLTVAKGAPIRIFKNLRVCGDCHSAMKYISSIFKRHI 753

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           ++RD   FHH+ +G CSC D+W
Sbjct: 754 ILRDLNCFHHFIEGKCSCGDFW 775



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 187/404 (46%), Gaps = 34/404 (8%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D +    ++  Y   G +++AR +F++    + + WS ++ GY +NG   E L  F +M 
Sbjct: 67  DKYTWNIMISAYANLGNLVEARKLFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFSQMW 126

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
               +P +  L  +L ACS    L  G+ +H + I   +  +  + + L+ MY+ C C+ 
Sbjct: 127 SDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCL- 185

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
                                        +E   L F     K+ + W+AM++GYA+N  
Sbjct: 186 -----------------------------LEAEYLFFSLPDRKNYVQWTAMLTGYAQNGE 216

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
             +A++ F EM+  GM+ +  T  S+++AC  +      +++H  I  + FG ++ V +A
Sbjct: 217 SLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSA 276

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           ++DMYAKCG L SAR + + M   +V+ W SMI     HG    AL+ F+KM +  I  +
Sbjct: 277 LVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRID 336

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
             T+  VL + +    +  G  +  S+T +            +VD++ +   L  AL++ 
Sbjct: 337 DFTYPSVLKSLASCKNLKIGESVH-SLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVF 395

Query: 511 ETMPFAPNVVIWGSLMAACRVHG--EIELAEFAAKQLLQLDPDH 552
             +    +V+ W SL+     +G  E  L  F   +  ++D D 
Sbjct: 396 NKI-LDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQ 438



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 148/278 (53%), Gaps = 8/278 (2%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + AL +F KM N  + ID F++P +LK++A  + L  G  VH L  K GF +   V   L
Sbjct: 319 EEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNAL 378

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           V MY   G +  A  +F+K+  +D++ W+ ++ GY  NG  ++ L LF +M+ + V+ D+
Sbjct: 379 VDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQ 438

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
            V++ + SAC+    + +G  VH   I ++       +++LITMYA CGC++ A  + D 
Sbjct: 439 FVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVXDS 498

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM-----VEKDLICWSAMISGYAENNHPQE 333
           +  +N++  TA++ GY++ G VE  +  F+ M     ++     ++ MI          E
Sbjct: 499 METRNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASDRYACMIDLLGRAGKINE 558

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           A  L N M V   +PD     S++SAC   G L+  +R
Sbjct: 559 AEHLLNRMDV---EPDATIWKSLLSACRVHGNLELGER 593



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 151/281 (53%), Gaps = 3/281 (1%)

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           L++  +  G +D A+ LFD++  ++      M+S Y+  G + +AR +F++    + I W
Sbjct: 43  LLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIXNSITW 102

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           S+++SGY +N    E L+ F++M   G KP + T+ SV+ AC+ L +L   + IH Y  K
Sbjct: 103 SSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIK 162

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALI 437
                ++ V   ++DMY+KC  L  A  +F  +  R+N + WT+M+  +A +G++  A+ 
Sbjct: 163 IQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQ 222

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F +M+++ ++ N  TF  +L AC+       GR++   +      P  Y     +VD++
Sbjct: 223 CFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQ-SALVDMY 281

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
            +   L  A  +++TM    +VV W S++  C  HG +E A
Sbjct: 282 AKCGDLASARMILDTMEI-DDVVCWNSMIVGCVTHGYMEEA 321



 Score = 48.1 bits (113), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 38/181 (20%)

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
           +N ++   +K G ++ AR++F++M  R+  +W  MI+A+A  G+   A   FN    E+ 
Sbjct: 40  SNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFN----ETP 95

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE--------------HYGCM 493
             N +T+  ++      G   EG   F+ M ++   P +Y               H G M
Sbjct: 96  IXNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKM 155

Query: 494 --------------------VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
                               VD++ +   L EA  L  ++P   N V W +++     +G
Sbjct: 156 IHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNG 215

Query: 534 E 534
           E
Sbjct: 216 E 216


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/510 (41%), Positives = 304/510 (59%), Gaps = 34/510 (6%)

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           PD      ++ AC+R   L  GE +H     N       +Q++L+ +Y  CG       L
Sbjct: 114 PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACG-------L 166

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV--EKDLICWSAMISGYAENNHPQE 333
           F                        E A  +FD+M    ++L+ W++M++ +A N  P E
Sbjct: 167 F------------------------ESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNE 202

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
            L +F EM      PD  T++SV++ACA  G L   +R+H+Y++K     +  V+NA+ID
Sbjct: 203 VLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALID 262

Query: 394 MYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
           +YAKCGS+  AR +FE M   R V+SWTS+I   A +G  + AL  F+ M+ E + P  +
Sbjct: 263 LYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEI 322

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
           T +GVLYACSH GLVD+G   F  M  +Y I P+ EH GCMVDL GRA  + EA + + T
Sbjct: 323 TMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIIT 382

Query: 513 MPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572
           MP  PN V+W +L+ +C +H ++EL + A ++L++LDP H G  VLLSN+YA    W DV
Sbjct: 383 MPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADV 442

Query: 573 GELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYV 632
             LRK+M +  + K    S +E+ N VYEF+  DRSH +++QIYE L E+   L+  GY+
Sbjct: 443 HVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYI 502

Query: 633 PDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLV 692
           P   + L D+E+EEK   + +HSE+LA+ + L+ S     IRI+KNLR+C DCH    L+
Sbjct: 503 PRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLI 562

Query: 693 SKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           SKVY REI++RDR+RFHH++ G CSCKDYW
Sbjct: 563 SKVYDREIIVRDRSRFHHFQGGACSCKDYW 592



 Score =  178 bits (452), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 125/420 (29%), Positives = 211/420 (50%), Gaps = 52/420 (12%)

Query: 21  SCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI--- 77
           +  SL   KQ HA+ L+      + + LL K LL  F L       L YA+++ S++   
Sbjct: 24  AAPSLAAAKQIHARALRAGVP--TSHPLLAKHLL--FHLAALRAPPLRYAVAVLSRLLPH 79

Query: 78  -PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
            P  P  + N  +R  + S RP+ AL++  + L      D  ++PP+++A AR   L EG
Sbjct: 80  GPLDPFPL-NTVLRIAAGSPRPRVALELHRRRLA---LPDTHTYPPLIQACARLLALREG 135

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR--DIVPWSVMIDGYF 194
             +H    K GF +  FVQ  LV +YGACG    A  +FD+M  R  ++V W+ M++ + 
Sbjct: 136 ECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFA 195

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
            NG  +EVL +F EM   +  PD   +  +L+AC+  G L+ G  VH ++    +  ++H
Sbjct: 196 ANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSH 255

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           + + LI +YA CG ++ A+ +F+++ L   VVS                           
Sbjct: 256 VSNALIDLYAKCGSVNDARRIFEEMGLGRTVVS--------------------------- 288

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
              W+++I G A N   +EAL+LF+ M+   + P ++TM+ V+ AC+H G++D   R   
Sbjct: 289 ---WTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFR--- 342

Query: 375 YID--KNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           Y D  K  +G   R+ +   ++D+  + G +E A +    M    N + W +++ + A+H
Sbjct: 343 YFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMH 402



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 6/210 (2%)

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385
           A +  P+ AL+L          PD  T   +I ACA L  L + + +H    KN F   +
Sbjct: 95  AGSPRPRVALELHRRRLAL---PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLV 151

Query: 386 RVNNAIIDMYAKCGSLESAREVFERM--RRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
            V N+++ +Y  CG  ESA +VF+ M  R RN++SW SM+N+FA +G     L  F +M 
Sbjct: 152 FVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEML 211

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
                P+G T + VL AC+  G +  GR +      +  +         ++DL+ +   +
Sbjct: 212 GVDFAPDGFTIVSVLTACAEFGALALGRRVHV-YVEKVGLVENSHVSNALIDLYAKCGSV 270

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHG 533
            +A  + E M     VV W SL+     +G
Sbjct: 271 NDARRIFEEMGLGRTVVSWTSLIVGLAANG 300


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/610 (37%), Positives = 342/610 (56%), Gaps = 46/610 (7%)

Query: 18  AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY--YALSIFS 75
           +I  C +L   +Q HAQ++         + L+    +TS  +        Y  YA     
Sbjct: 11  SIKDCKNLRIFRQIHAQLVT--------SGLVYDDFVTSKVMEFFANFVEYGDYACDYLE 62

Query: 76  QIPAP-PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL 134
           Q      S   N  I        P+ A+ V+ +M+ +G   D F+FP +LKA +   G  
Sbjct: 63  QGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSR 122

Query: 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
           EG QVHG+  KLG  +D +VQ  L+  YGACG    A  +FD+M  RD+V W+ +I G+ 
Sbjct: 123 EGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFM 182

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           + G FDE +++F  M   +VEP    L  +L+AC+R G+L  G+ +H             
Sbjct: 183 KAGHFDEAISVFFRM---DVEPSMTTLVSVLAACARNGDLCTGKGIH------------- 226

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
                              G+ ++    NLV+  AM+  Y + G   +A+ IFD++  +D
Sbjct: 227 -------------------GVIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRD 267

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           ++ W+ MI+G  +++HP+++L+LF+ M+  G+ PD + + SV+SACA LG LD    +H 
Sbjct: 268 IVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHE 327

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           YI++     D+ +  AI+DMYAKCG +E A ++F  M +RN  +W +++   A+HG    
Sbjct: 328 YINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHE 387

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           AL  F  M    + PN +TF+ +L AC H GLVDEGR+ F +M+  YN+ PK EHYGCM+
Sbjct: 388 ALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMI 447

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DLF RA LL EA+EL  TMP  P+V+IWG L+ AC   G IEL+      +L+LD D  G
Sbjct: 448 DLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGNIELSHRIQDYILELDHDDSG 507

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
             VLLSNI A ++RW +V  LR+ MK+RG+ K    S IE++ + +EF+  D SH QT++
Sbjct: 508 VFVLLSNISAINQRWSNVTRLRRLMKDRGVRKAPGSSVIEVDGKAHEFVVGDISHLQTEE 567

Query: 615 IYEKLNEVIS 624
           IY+ LN + S
Sbjct: 568 IYKVLNLINS 577


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/649 (33%), Positives = 353/649 (54%), Gaps = 31/649 (4%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A+ +F  I  P   V +  I  +    + + ++K+F  M       ++++   +L A   
Sbjct: 368 AIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATN 427

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G  +H    K GF +D  V   LV MY   G + D   +++ M  RD++ W+  
Sbjct: 428 TGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAY 487

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           + G    G++D  L +F  M      P+      IL +CS   ++ YG  VH  II N +
Sbjct: 488 LSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQL 547

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             +  + + LI MYA C  ++ A   F+++ +++L   T +++ Y+              
Sbjct: 548 DDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYA-------------- 593

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                            + N  ++AL  F +MQ  G+KP++ T+   +S C+ L  L+  
Sbjct: 594 -----------------QTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG 636

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           Q++H  + K+    D+ V +A++DMYAKCG +E A  +FE + RR+ I+W ++I  +A +
Sbjct: 637 QQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQN 696

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G    AL  F  M DE I P+GVTF G+L ACSH GLV+EG+E F SM  ++ I P  +H
Sbjct: 697 GQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDH 756

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
             CMVD+ GR     E  + ++ M  + N +IW +++ A ++H  + L E AA +L +L 
Sbjct: 757 CACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQ 816

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P+ + + +LLSNI+A + RW DV  +R  M  +G+ KE  CS +E N +V+ F++ D SH
Sbjct: 817 PEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSH 876

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
            Q  +I+ KL+E+  EL    YVP     L ++ + EK+E + +HSE+LAL + LIS+  
Sbjct: 877 PQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTSS 936

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           +  IRI KNLR+C DCH+ +K +S +  +EIV+RD  RFHH+K+G CSC
Sbjct: 937 EKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSC 985



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 146/546 (26%), Positives = 245/546 (44%), Gaps = 43/546 (7%)

Query: 11  LTLPTS-TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP-SSLY 68
            TL T   A S C +L   KQ HAQ  KL         LLL L + S  +        + 
Sbjct: 214 FTLATGLKACSLCMALDLGKQMHAQAFKLG--------LLLDLFVGSALVDLYAKCGEIE 265

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
            A  +F  +P       N  +   +        LK+F  M+   +  + F+   +LK  A
Sbjct: 266 LASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCA 325

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
            ++ L +G  +H L  K G+  + F+  GLV MY  CG  +DA  +F  +   DIV WS 
Sbjct: 326 NSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSA 385

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I    Q G  +E + LF  M++ +  P++  +  +LSA +  GNL YG+++H  +    
Sbjct: 386 LITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYG 445

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D  + + L+TMY   GC                               V D   +++
Sbjct: 446 FETDVAVSNALVTMYMKNGC-------------------------------VHDGTKLYE 474

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
            MV++DLI W+A +SG  +       L +F  M   G  P+  T +S++ +C+ L  +  
Sbjct: 475 SMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHY 534

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            +++H +I KN    +  V  A+IDMYAKC  LE A   F R+  R++ +WT +I  +A 
Sbjct: 535 GRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQ 594

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
                 AL +F +M+ E + PN  T  G L  CS    ++ G+++ + +    ++   + 
Sbjct: 595 TNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFV 654

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
               +VD++ +   + EA  L E +    + + W +++     +G+   A  A + +L  
Sbjct: 655 G-SALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDE 712

Query: 549 DPDHDG 554
               DG
Sbjct: 713 GISPDG 718



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 186/409 (45%), Gaps = 33/409 (8%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +  +L+  A    L     +HGL  K     D  +   LV +Y  C     ARL+  KM 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            RD+V W+ +I G    G  ++ + LF+EM+   + P+E  L+  L ACS    L  G+ 
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H       + LD  + S L+ +YA CG +++A  +F  +  +N V    +++GY++ G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           V     +F  M+E D+ C                               ++ T+ +V+  
Sbjct: 295 VTGVLKLFCSMMELDVKC-------------------------------NEFTLTTVLKG 323

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           CA+   L Q Q IH  I K  + G+  +   ++DMY+KCG    A  VF+ +++ +++ W
Sbjct: 324 CANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVW 383

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           +++I      G +  ++  F+ M+     PN  T   +L A ++ G +  G+ I A +  
Sbjct: 384 SALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVW- 442

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           +Y           +V ++ +   + +  +L E+M    +++ W + ++ 
Sbjct: 443 KYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSG 490



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 156/319 (48%), Gaps = 41/319 (12%)

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           S +L  C+   +L   +A+H  I+ + +  D+HL  +L+ +YA C               
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKC--------------- 160

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
                     S Y        ARL+  +M ++D++ W+A+I G        +++ LF EM
Sbjct: 161 --------RYSAY--------ARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEM 204

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
           Q  G+ P++ T+ + + AC+    LD  +++H    K     DL V +A++D+YAKCG +
Sbjct: 205 QNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEI 264

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
           E A ++F  M  +N ++W  ++N +A  GD    L  F  M +  +  N  T   VL  C
Sbjct: 265 ELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGC 324

Query: 462 SHAGLVDEGREIFASMTNEYNIPPKY---EHYGC-MVDLFGRANLLREALELVETMPFAP 517
           +++  + +G+ I + +     I   Y   E  GC +VD++ +  L  +A+ + +T+   P
Sbjct: 325 ANSKNLKQGQVIHSLI-----IKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KP 378

Query: 518 NVVIWGSLMAACRVHGEIE 536
           ++V+W +L+      G+ E
Sbjct: 379 DIVVWSALITCLDQQGQSE 397



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 342 QVCGMKPDKVTMLS-VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           QVC     K+   S ++  CA    L  A+ IH  I K+    D  +  +++++YAKC  
Sbjct: 103 QVCWSSKKKLKYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRY 162

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
              AR V  +M  R+V+SWT++I      G A +++  F +M++E I PN  T    L A
Sbjct: 163 SAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKA 222

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHY--GCMVDLFGRANLLREALELVETMPFAPN 518
           CS    +D G+++ A     + +    + +    +VDL+ +   +  A ++   MP   N
Sbjct: 223 CSLCMALDLGKQMHA---QAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQN 278

Query: 519 VVIWGSLMAACRVHGEI 535
            V W  L+      G++
Sbjct: 279 DVTWNVLLNGYAQRGDV 295


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/718 (33%), Positives = 381/718 (53%), Gaps = 45/718 (6%)

Query: 10  PLTLPTSTAI-SSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           P+   TS A+   C+ L  +   ++ HA +LK     + Q + LL +      + +    
Sbjct: 264 PMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGRVDS---- 319

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
               AL +F QI        N  +     +     A+  F +ML  G   D      +  
Sbjct: 320 ----ALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSS 375

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A+     L  G + H    K    +D  V   L+ MY  CG I  +  +F+ M  RD + 
Sbjct: 376 ALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHIS 435

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ ++  + Q+    E L +  E++   +  D M++  IL  C    ++S  + VH + I
Sbjct: 436 WTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAI 495

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
            N + LD  L++ LI +Y  CG  D +  L                              
Sbjct: 496 RNGL-LDLILENRLIDIYGECGEFDHSLNL------------------------------ 524

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
            F ++ +KD++ W++MI+    N     A+ LF EMQ   ++PD V ++S++ A A L  
Sbjct: 525 -FQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSS 583

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L + +++H ++ +  F  +  V ++++DMY+ CGS+  A  VFER + ++V+ WT+MINA
Sbjct: 584 LTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINA 643

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
             +HG  + A+  F +M    + P+ V+F+ +LYACSH+ LV+EG+     M ++Y + P
Sbjct: 644 TGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKP 703

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
             EHY C+VD+ GR+    EA E ++TMP  P   +W +L+ ACRVH    LA  AA +L
Sbjct: 704 WQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKL 763

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
           L+L+PD+ G  +L+SN++A+  +W +  E R  M ERG+ K  ACS IE+ N ++ F + 
Sbjct: 764 LELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSG 823

Query: 606 DRSHKQTDQIYEKLNEVISEL-KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
           D  H+ ++ I+ KL+E+   L +  GYV D    L D  +EEK +++  HSE++A+ +GL
Sbjct: 824 DYCHRDSEAIHLKLSEITEMLRREGGYVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGL 883

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           IS++    IRI KNLRVC DCH F KLVSK++ R+IV+RD  RFHH+  G CSC+D+W
Sbjct: 884 ISTRPGMPIRIAKNLRVCGDCHEFTKLVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 197/433 (45%), Gaps = 40/433 (9%)

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF---GSDPFVQTGL 158
           L+  L+ L       R  +  +L  +A      EG QVH      G      D F+ T L
Sbjct: 42  LRQALRQLTTRAPPAREHYGWVLDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKL 101

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV---E 215
           V MYG CG++ DAR +F+ M  R +  W+ ++  Y  +G   E + ++  M+ S      
Sbjct: 102 VFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSA 161

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           PD   L+ +L AC   G+   G  VH   +   +     + + LI MYA CG +D A  +
Sbjct: 162 PDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRV 221

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           F+ +                     +DAR         D+  W++++SG  +N    EAL
Sbjct: 222 FEWL--------------------QQDAR---------DVASWNSVVSGCVQNGRTLEAL 252

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN-NAIIDM 394
            LF  MQ  G   +  T ++V+  CA LG+L   + +H  + K   G +L +  NA++ M
Sbjct: 253 ALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLK--CGSELNIQCNALLVM 310

Query: 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           YAK G ++SA  VF ++  ++ ISW SM++ +  +     A+ FF +M      P+    
Sbjct: 311 YAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACV 370

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           + +  A  H   ++ GRE  A    +  +    +    ++D++ +   +  + ++ E+M 
Sbjct: 371 VSLSSALGHLSRLNNGREFHAYAIKQ-RLHTDLQVGNTLMDMYIKCGSIECSAKVFESMG 429

Query: 515 FAPNVVIWGSLMA 527
              ++  W +++A
Sbjct: 430 IRDHIS-WTTILA 441



 Score = 44.7 bits (104), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 7/131 (5%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           QP     +    AI+  SSLT  KQ H  +++       +N  +   +++S     +   
Sbjct: 565 QPDSVALVSILVAIAGLSSLTKGKQVHGFLIR-------RNFPIEGPVVSSLVDMYSGCG 617

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           S+ YA+ +F +       +    I A       K A+ +F +ML  GLT D  SF  +L 
Sbjct: 618 SMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLY 677

Query: 126 AIARAEGLLEG 136
           A + ++ + EG
Sbjct: 678 ACSHSKLVEEG 688


>gi|302782375|ref|XP_002972961.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
 gi|300159562|gb|EFJ26182.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
          Length = 601

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/626 (36%), Positives = 356/626 (56%), Gaps = 37/626 (5%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARA--EGLLEGMQVHGLGTKLGFGSDPFVQT 156
           K AL++F K +NE L  ++ ++  +LK+ A    + L +G ++H      GFG+D  VQ 
Sbjct: 11  KKALQLFKKSINEELQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQGFGTDLVVQN 70

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
            L+ MY  CG    A  +FDKM  ++++ ++ MI  Y       E   L+++M    + P
Sbjct: 71  SLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMP 130

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           D    +  L+ C     +  GEA+H       V L  H + T                  
Sbjct: 131 DIYAYAAALAVCP---TIREGEAIH-------VKLGNHERRTP----------------- 163

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
                   V S A+V  Y R G++  A+ +FD +  KDL  ++ MI+ +A+ +   +A+ 
Sbjct: 164 --------VCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAIS 215

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           L+ EM+   ++P+  T  SV+ AC+ LG L + + IH  +       D+  N A+++MYA
Sbjct: 216 LYIEMEGRNLEPNLWTYTSVLDACSKLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYA 275

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KCGS   AR VF     +NV +WTS+++A++  G ++  L  + +M  E + P+ VTF  
Sbjct: 276 KCGSAHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTA 335

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           +  ACSH+GL DEG   F +M  ++ I P   HY CM+DL GR   LREA ELV TMP++
Sbjct: 336 IFNACSHSGLPDEGLLYFRAMREDHWIVPLQPHYTCMIDLLGRVGRLREAEELVRTMPYS 395

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
           P+VV W  L++AC+V+G++++   A K++ +L+P   G  +L+ N+YAK  +W DV E++
Sbjct: 396 PDVVTWTILLSACKVYGDLKIGARAYKRITELNPPDSGPYLLMGNMYAKAGKWADVAEVK 455

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
           K +K+RG+ K    S IE    ++EF+  D +H    +I  +L EV  +L  AGY PD  
Sbjct: 456 KMIKQRGLAKPPGKSMIEAQRRIHEFVCGDTAHPLNQEIRARLQEVHEQLSHAGYEPDTK 515

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
             LVD+ +E K E++L+HSE++AL  GL++S   + + IVKNLR+C DCH+F KLVSK+ 
Sbjct: 516 EVLVDVNEEVKPELLLFHSERMALGLGLLTSDAGATLHIVKNLRICPDCHSFFKLVSKML 575

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
            R++++RD  RFH ++ G CSC DYW
Sbjct: 576 HRKVLVRDSHRFHIFQRGSCSCGDYW 601



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 194/404 (48%), Gaps = 48/404 (11%)

Query: 65  SSLYYALSIFSQIPAPPSRVS-NKFIRAISWSHRPKH--ALKVFLKMLNEGLTIDRFSFP 121
            S  +A  +F ++  P + +S    I+A  ++H  KH  A +++ KML+EG+  D +++ 
Sbjct: 80  GSFKFAAGVFDKM-EPKNLISYTSMIQA--YTHTAKHVEAYELYKKMLSEGIMPDIYAYA 136

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGS--DPFVQTGLVGMYGACGKILDARLMFDKMS 179
               A+A    + EG  +H    KLG      P     LVGMYG  G+I  A+ +FD + 
Sbjct: 137 A---ALAVCPTIREGEAIH---VKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIR 190

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
           Y+D+  ++ MI  + +     + ++L+ EM+  N+EP+    + +L ACS+ G L+ G+ 
Sbjct: 191 YKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVLDACSKLGALTEGKE 250

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H+ +   +   D    + L+ MYA CG    A+ +F+   LKN+   T+++S YS+ GQ
Sbjct: 251 IHKKVKGGDQPTDVAYNTALVNMYAKCGSAHEARAVFNDCGLKNVFTWTSLMSAYSQPGQ 310

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
                                           Q  L+ +  M   G+ PD VT  ++ +A
Sbjct: 311 -------------------------------SQYRLEAYQRMNCEGVIPDDVTFTAIFNA 339

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVN-NAIIDMYAKCGSLESAREVFERM-RRRNVI 417
           C+H G+ D+       + ++ +   L+ +   +ID+  + G L  A E+   M    +V+
Sbjct: 340 CSHSGLPDEGLLYFRAMREDHWIVPLQPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVV 399

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYA 460
           +WT +++A  ++GD +     + ++ +    D      +G +YA
Sbjct: 400 TWTILLSACKVYGDLKIGARAYKRITELNPPDSGPYLLMGNMYA 443



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 160/347 (46%), Gaps = 39/347 (11%)

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN--LSYGEAVHEFIIDN 247
           +  Y +N L  + L LF++     ++ ++     +L +C+  G+  L  G+ +H   I  
Sbjct: 1   MGAYQENDLHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQ 60

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
               D  +Q++LI MYA CG    A G+FDK+  KNL+  T+M+  Y+   +        
Sbjct: 61  GFGTDLVVQNSLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAK-------- 112

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
                                    EA +L+ +M   G+ PD     + ++ C     + 
Sbjct: 113 -----------------------HVEAYELYKKMLSEGIMPDIYAYAAALAVCP---TIR 146

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           + + IH+ +  +     +  +NA++ MY + G + SA+ VF+ +R +++ S+ +MI  FA
Sbjct: 147 EGEAIHVKLGNHERRTPV-CSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNNMIAVFA 205

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            + D   A+  + +M+  +++PN  T+  VL ACS  G + EG+EI   +    + P   
Sbjct: 206 KYDDGSKAISLYIEMEGRNLEPNLWTYTSVLDACSKLGALTEGKEIHKKVKGG-DQPTDV 264

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
            +   +V+++ +     EA  +        NV  W SLM+A    G+
Sbjct: 265 AYNTALVNMYAKCGSAHEARAVFNDCGLK-NVFTWTSLMSAYSQPGQ 310



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 127/279 (45%), Gaps = 38/279 (13%)

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG--VLDQAQRIHLYIDKN 379
           +  Y EN+  ++AL+LF +     ++ ++ T ++V+ +CAHLG   L+  + IH +    
Sbjct: 1   MGAYQENDLHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQ 60

Query: 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFF 439
            FG DL V N++I MYAKCGS + A  VF++M  +N+IS+TSMI A+        A   +
Sbjct: 61  GFGTDLVVQNSLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELY 120

Query: 440 NKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP-------------- 485
            KM  E I P+   +   L  C     + EG  I   + N     P              
Sbjct: 121 KKMLSEGIMPDIYAYAAALAVCP---TIREGEAIHVKLGNHERRTPVCSNALVGMYGRFG 177

Query: 486 ------------KYE---HYGCMVDLFGRANLLREALEL---VETMPFAPNVVIWGSLMA 527
                       +Y+    Y  M+ +F + +   +A+ L   +E     PN+  + S++ 
Sbjct: 178 RIASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVLD 237

Query: 528 ACRVHGEIELAEFAAKQLLQLDPDHDGAL-VLLSNIYAK 565
           AC   G +   +   K++   D   D A    L N+YAK
Sbjct: 238 ACSKLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAK 276


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/598 (38%), Positives = 344/598 (57%), Gaps = 45/598 (7%)

Query: 138 QVHGLGTKLGFG--SDPFVQTGLVGMYGACGK-----ILDARLMFDKMSY-RDIVPWSVM 189
           Q+H +  K G G  + P   T L+ +    G      +  AR +FD++ +  D+V ++ +
Sbjct: 46  QLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTL 105

Query: 190 IDGYFQNGLF----DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           + GY + G      +E   +F  M    V PD      +L AC+ A     G   H   +
Sbjct: 106 LRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAV 165

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
               A   ++  TLI MYA CG                                V  AR+
Sbjct: 166 KAGAAEHEYVAPTLINMYAECG-------------------------------DVRAARV 194

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +FD+M  + ++ ++AMI+    ++ P EAL LF EMQ  G+KP  VT++SV+SACA LG 
Sbjct: 195 MFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGA 254

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L+  + IH YI K      ++VN A+IDMYAKCGSLE A  VF+ M  R+  +W+ M+ A
Sbjct: 255 LELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVA 314

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
           +A HG  R A+  F +MK + + P+ VTF+GVLYACSH+G+V EG + F SM  EY I  
Sbjct: 315 YANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVS 373

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
             +HYGC+ DL  R+  L  A + ++ +P  P  ++W +L++AC  HG++++ +   +++
Sbjct: 374 GIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERI 433

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
           L+LD  H G  V+ SN+ A   RW+++  +RK M E+G++K   CS IE++N V+EF   
Sbjct: 434 LELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAG 493

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDI-HSALVDLEDEEKREVILWHSEKLALCYGL 664
           D SH  + +    ++EVI +LK  GYVP+  H   V++ +EEK   + +HSEKLA+ +GL
Sbjct: 494 DGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGL 553

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +++   + +RIVKNLRVC DCH+  KLVS V+ R I++RD  RFHH++DGVCSC DYW
Sbjct: 554 LNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 212/454 (46%), Gaps = 38/454 (8%)

Query: 22  CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPP 81
           C+SL  + Q HA  +K      +  + + +LL          P+ L YA  +F +IP P 
Sbjct: 38  CTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPG 97

Query: 82  SRV-SNKFIRAISWSHR----PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
             V  N  +R  +         + A +VF++M+ EG+  D ++F  +LKA A A    EG
Sbjct: 98  DVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEG 157

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
            Q HG+  K G     +V   L+ MY  CG +  AR+MFD+M    +V ++ MI    ++
Sbjct: 158 RQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRS 217

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
            L  E L LF EM+   ++P  + L  +LSAC+  G L  G  +H++I    +     + 
Sbjct: 218 SLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVN 277

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           + LI MYA CG                                +EDA  +F  M  +D  
Sbjct: 278 TALIDMYAKCG-------------------------------SLEDAIGVFQDMESRDKQ 306

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            WS M+  YA + + +EA+ +F EM+  GMKPD VT L V+ AC+H G++ +  +    +
Sbjct: 307 AWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM 366

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNA 435
            +      ++    + D+ A+ G LE A +  + +  +   I W ++++A A HGD    
Sbjct: 367 REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMG 426

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
              F ++  E  D +G  ++     C++ G  +E
Sbjct: 427 KRVFERIL-ELDDSHGGDYVIFSNLCANTGRWEE 459


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/610 (35%), Positives = 343/610 (56%), Gaps = 33/610 (5%)

Query: 115 IDRFSFPPILKAIARAEGLLEGMQ-VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
            D  S  P+ +A+ R+   L  +Q VH      G      + T L+ +    G I  AR 
Sbjct: 21  FDTQSHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARR 80

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +F  +   D   +  ++    + G   + +  +  M  S         + ++ AC+    
Sbjct: 81  LFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSA 140

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           L  G+ +H  ++      D ++Q+ LI +YA                             
Sbjct: 141 LRLGKEIHSHVMVCGYGSDMYVQAALIALYA----------------------------- 171

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
             +A  ++ A+ +FD M ++ +I W+++ISGY +N  PQE++ LF+ M   G +PD  T+
Sbjct: 172 --KASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATI 229

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
           +S++S+C+ LG LD    +H Y D N F  ++ +  ++I+MY +CG++  AREVF+ M+ 
Sbjct: 230 VSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKE 289

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           RNV++WT+MI+ + +HG  R A+  F +M+     PN +TF+ VL AC+H+GL+D+GR +
Sbjct: 290 RNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRV 349

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET-MPFAPNVVIWGSLMAACRVH 532
           F+SM   Y + P  EH  CMVD+FGRA LL +A + ++  +P  P   +W S++ ACR+H
Sbjct: 350 FSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMH 409

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
              +L    A+ +L ++P++ G  V+LSNIYA   R   V  +R  M  R + K+   S 
Sbjct: 410 RNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYST 469

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652
           IE+N + Y F   D+SH QT+ IY  L+E++     +GYVP   S + DLE+EE+   + 
Sbjct: 470 IEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALR 529

Query: 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712
           +HSEKLAL +GL+ + +   IRIVKNLR+CEDCH+ IK +S +  REI++RD+ RFHH+K
Sbjct: 530 YHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFK 589

Query: 713 DGVCSCKDYW 722
           DG CSC DYW
Sbjct: 590 DGSCSCLDYW 599



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 126/415 (30%), Positives = 209/415 (50%), Gaps = 43/415 (10%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           + S   L +++Q HA I+ +S  H S+ SLL KL+    SL   T  S+ YA  +F  +P
Sbjct: 34  LRSGPRLRNLQQVHAHII-VSGLHRSR-SLLTKLI----SL-VCTAGSITYARRLFPTVP 86

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P S + +  ++  S        +  + +ML  G     ++F  ++KA A    L  G +
Sbjct: 87  NPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKE 146

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H      G+GSD +VQ  L+ +Y     +  A+ +FD M  R I+ W+ +I GY QNGL
Sbjct: 147 IHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGL 206

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
             E + LF  M  S  +PD   +  +LS+CS+ G L +G  +H++   N   L+  L ++
Sbjct: 207 PQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTS 266

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           LI MY  CG +  A+ +FD +  +N+V  TAM+SGY                        
Sbjct: 267 LINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYG----------------------- 303

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
              + GY      ++A++LF EM+  G +P+ +T ++V+SACAH G++D  +R+   + K
Sbjct: 304 ---MHGYG-----RQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSM-K 354

Query: 379 NAFG--GDLRVNNAIIDMYAKCGSLESAREVFERM--RRRNVISWTSMINAFAIH 429
            A+G    +  N  ++DM+ + G L  A +  ++   +      WTSM+ A  +H
Sbjct: 355 EAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMH 409


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/608 (37%), Positives = 334/608 (54%), Gaps = 31/608 (5%)

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
           ID  +    L+  A+ + LL G   HGL    G  +D      L+ +Y  CG+   ARL+
Sbjct: 55  IDVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLV 114

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           FD M  R IV W+ MI GY  +G   + L LF  M        E  LS  + AC  A   
Sbjct: 115 FDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICAC--AAKY 172

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
           +  E      I   +ALD+                             N  V TA++  Y
Sbjct: 173 AINECKQLHTIALKLALDS-----------------------------NSFVGTAILDVY 203

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
           ++   ++DA  +F++M E+ L+ WS++ +GY +N   +EAL LF   Q  G++  + T+ 
Sbjct: 204 AKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLS 263

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           +++SACA L +  +  ++H  I K  F G+  V  +++D+YA+CG +E A  +F  M  +
Sbjct: 264 AILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHK 323

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           NV+ W +MI +F+ H  +  A+I F KM+   I PN VT++ VL  CSHAGLV++GR  F
Sbjct: 324 NVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYF 383

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
           + + ++  + P   HY CMVD+ GR+    EA EL+  MPF P   +WGSL+ +CR +  
Sbjct: 384 SLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLGSCRNYNN 443

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
           I LA  AA+QL QL+PD+ G  VLLSN+YA    W++V   RK +K+ G  KE   S IE
Sbjct: 444 IRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENVLMARKYLKDSGAKKEMGRSWIE 503

Query: 595 MNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWH 654
              +V+ F+  +R H +   IY KL E+  E++       I   L D+  E+K E++  H
Sbjct: 504 AKGKVHVFVVGERKHPRITDIYNKLEEIYHEMRKFARRTSIECDLHDVHAEQKEELLKHH 563

Query: 655 SEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDG 714
           SEKLAL +GLIS   +  I I KNLR+C DCH+F+K+ + +  R +++RD  RFHH+KDG
Sbjct: 564 SEKLALSFGLISLPSNIPIIIHKNLRICGDCHSFMKIAAHITERLVIVRDTNRFHHFKDG 623

Query: 715 VCSCKDYW 722
            CSC D+W
Sbjct: 624 SCSCGDFW 631



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 172/368 (46%), Gaps = 33/368 (8%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I   + S     ALK+F +M  EG  +  F+    + A A    + E  Q+H +  K
Sbjct: 127 NTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALK 186

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
           L   S+ FV T ++ +Y  C  I DA  +F+KM  R +V WS +  GY QNGL +E L+L
Sbjct: 187 LALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHL 246

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           F   +   VE  E  LS ILSAC+       G  +H  I+      +  + ++L+ +YA 
Sbjct: 247 FRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYAR 306

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
           CG ++ A  LF  +  KN+V+  AM++ +SR                             
Sbjct: 307 CGQIEKAYALFAYMEHKNVVIWNAMIASFSR----------------------------- 337

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGD 384
             + H  EA+ LF +MQ  G+ P++VT LSV+S C+H G++++ +    L +       +
Sbjct: 338 --HAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPN 395

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIHGDARNALIFFNKMK 443
           +   + ++D+  + G  + A E+  +M      S W S++ +   + + R A I   ++ 
Sbjct: 396 VLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLF 455

Query: 444 DESIDPNG 451
               D  G
Sbjct: 456 QLEPDNGG 463


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/680 (36%), Positives = 381/680 (56%), Gaps = 60/680 (8%)

Query: 62  TTPSSLYYALSIFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
           TT S+++Y  S       P   VS N  +   S    P  A+ +F +M     T+     
Sbjct: 9   TTSSTIHYTRS-------PLISVSWNSIVSVYSHCFVPNDAVFLFREM-----TVGYGIL 56

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
           P  +       G++  + V G    LGF    FV   LV MY  CGK+ DA  +F++M +
Sbjct: 57  PDTV-------GVVNILPVSGF---LGF----FVGNALVDMYAKCGKMEDASKVFERMRF 102

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           +D+V W+ M+ GY QNG F++ L+LF +M+   +E D +  S ++S  ++ G       V
Sbjct: 103 KDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDV 162

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF---DKVLLK--------NLVVSTA 289
              +       +     +L++  A+ G +   K       K +LK        +L V  A
Sbjct: 163 FRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINA 222

Query: 290 MVSGYSRAGQVEDARLIFDQMV--EKDLICWSAMISGYAENNHPQEALKLFNEM---QVC 344
           ++  Y++   +E AR +FD++   ++D++ W+ MI GYA++     AL+LF+EM     C
Sbjct: 223 LIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNC 282

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYI-DKNAFGGD-LRVNNAIIDMYAKCGSLE 402
            + P+  T+  V+ ACA L  L   ++IH Y+  ++    D L V N +IDMY+K G ++
Sbjct: 283 -IVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVD 341

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
           +A+ VF+ M +RN +SWTS++  + +HG    AL+            +G+TF+ VLYACS
Sbjct: 342 TAQVVFDSMSKRNAVSWTSLLTGYGMHG---AALVL-----------DGITFLVVLYACS 387

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
           H+G+VD G ++F  M+ ++ + P  EHY CM DLFGRA  L EA  L+  M   P  V+W
Sbjct: 388 HSGMVDRGIDLFYRMSKDFVVDPGVEHYACMADLFGRAGRLCEATRLINDMSMEPTPVVW 447

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582
            +L++ACR H   ELAEFAAK+LL+L  D+DG   LLSNIYA  +RW+DV  +R  MK  
Sbjct: 448 IALLSACRTHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIRYLMKRT 507

Query: 583 GILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDL 642
           GI K    S ++    +  F   DR+H Q+ +IYE L ++I  +K  GYVP  + +L D+
Sbjct: 508 GIKKRPGWSWVKGRKGMETFYVGDRTHLQSQKIYETLADLIKRIKAIGYVPQTNFSLHDV 567

Query: 643 EDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVI 702
           +DEEK + +L HSEKLAL Y +++    + IRI KNLR+C D H+ I  +S +   EI++
Sbjct: 568 DDEEKGDQLLEHSEKLALAYAILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEIIL 627

Query: 703 RDRTRFHHYKDGVCSCKDYW 722
           RD +RFH +K+G CSCK YW
Sbjct: 628 RDSSRFHQFKNGSCSCKGYW 647


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/588 (38%), Positives = 350/588 (59%), Gaps = 17/588 (2%)

Query: 143 GTKLGFGSDPFVQTG-----LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           G +  F S P   T      L G   A G++ DAR +FD++   D V ++ ++  +F +G
Sbjct: 35  GAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASG 94

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH-EFIIDNNVALDAHLQ 256
             D    LF  M + +V    +  + ++S  S++G +   +AV     + N+V+ +A   
Sbjct: 95  DADGARRLFASMPVRDV----VSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNA--- 147

Query: 257 STLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
             +++ +A    M  A+  F     K + V+ TAMVSGY   G V  A   F+ M  ++L
Sbjct: 148 --MVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNL 205

Query: 316 ICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           + W+A+++GY +N+H  +AL+LF  M +   ++P+  T+ SV+  C++L  L   ++IH 
Sbjct: 206 VSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQ 265

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           +  K     +L V  +++ MY KCG L SA ++F  M  R+V++W +MI+ +A HGD + 
Sbjct: 266 WCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKE 325

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           A+  F +MKDE ++PN +TF+ VL AC H GL D G   F  M   Y I P+ +HY CMV
Sbjct: 326 AINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMV 385

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DL  RA  L  A++L+ +MPF P+   +G+L+AACRV+  +E AE AA +L++ DP   G
Sbjct: 386 DLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAG 445

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
           A V L+NIYA   +W DV  +R+ MK+  ++K    S IE+   ++EF + DR H Q   
Sbjct: 446 AYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYL 505

Query: 615 IYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIR 674
           I+EKL ++   +K  GYVPD+   L D+++  K ++++ HSEKLA+ +GLIS+     +R
Sbjct: 506 IHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLR 565

Query: 675 IVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           I KNLRVC DCHN  K++SK+  REI++RD TRFHH++ G CSC DYW
Sbjct: 566 IFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 1/169 (0%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIA 128
           A+  F  +P       N  +     +     AL++F  M+ E  +  +  +   +L   +
Sbjct: 193 AIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCS 252

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
               L  G Q+H    KL    +  V T LV MY  CG +  A  +F +M  RD+V W+ 
Sbjct: 253 NLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNA 312

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           MI GY Q+G   E +NLFE MK   VEP+ +    +L+AC   G   +G
Sbjct: 313 MISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFG 361


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/655 (35%), Positives = 366/655 (55%), Gaps = 37/655 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A++ FS+I           + A   +   K AL++F K +NE L  ++ ++  +LK+ A 
Sbjct: 36  AVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKKSINEELQQNQATYVTVLKSCAH 95

Query: 130 -AEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
             E  LE G ++H      GFG+D  VQ  L+ MY  CG    A  +F+KM  ++++ ++
Sbjct: 96  LGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKFAAGVFEKMEPKNLISYT 155

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
            MI  Y       E   L+++M    + PD    +  L+ C     +  GEA+H      
Sbjct: 156 SMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVCP---TIREGEAIH------ 206

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
            V L  H + T                          V S A+V  Y R G++  A+ +F
Sbjct: 207 -VKLGNHERRTP-------------------------VCSNALVGMYGRFGRIASAKWVF 240

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
           D +  KDL  ++ MI+ +A+ +   +A+ L+ EM+   ++P+  T  SV+ AC+ LG L 
Sbjct: 241 DGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGALT 300

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           + + IH  +       D+  N A+++MYAKCGS   AR VF     +NV +WTS+++A++
Sbjct: 301 EGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSAYS 360

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
             G ++  L  + +M  E + P+ VTF  +  ACSH+GL DEG   F +M  ++ I P  
Sbjct: 361 QPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQ 420

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
            HY CM+DL GR   LREA ELV TMP++P+VV W  L++AC+V+G++++   A K++ +
Sbjct: 421 PHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITE 480

Query: 548 LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
           L+P   G  +L+ N+YAK  +W DV E++K +K+RG+ K    S IE    ++EF+  D 
Sbjct: 481 LNPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCGDT 540

Query: 608 SHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS 667
           +H    +I  +L EV  +L  AGY PD    LVD+ +E K E++L+HSE++AL  GL++S
Sbjct: 541 AHPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERMALGLGLLTS 600

Query: 668 KKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              + + IVKNLR+C DCH+F KLVSK+  R++++RD  RFH ++ G CSC DYW
Sbjct: 601 DAGATLHIVKNLRICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 655



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 180/386 (46%), Gaps = 39/386 (10%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           + F+   LV  YG C  I DA   F +++ ++   +++M+  Y +N L  + L LF++  
Sbjct: 16  ETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKKSI 75

Query: 211 MSNVEPDEMVLSKILSACSRAGN--LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
              ++ ++     +L +C+  G   L  G+ +H   I      D  +Q++LI MYA CG 
Sbjct: 76  NEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGS 135

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
              A G+F+K+  KNL+  T+M+  Y+   +                             
Sbjct: 136 FKFAAGVFEKMEPKNLISYTSMIQAYTHTAK----------------------------- 166

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
               EA +L+ +M   G+ PD     + ++ C     + + + IH+ +  +     +  +
Sbjct: 167 --HVEAYELYKKMLSEGIMPDIYAYAAALAVCP---TIREGEAIHVKLGNHERRTPV-CS 220

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           NA++ MY + G + SA+ VF+ +R +++ S+ +MI  FA + D   A+  + +M+  +++
Sbjct: 221 NALVGMYGRFGRIASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLE 280

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
           PN  TF  VL ACS  G + EG+EI   +    + P    +   +V+++ +     EA  
Sbjct: 281 PNLWTFTSVLDACSKLGALTEGKEIHKKVKGG-DQPTDVAYNTALVNMYAKCGSTHEARA 339

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGE 534
           +        NV  W SLM+A    G+
Sbjct: 340 VFNDCGL-KNVFTWTSLMSAYSQPGQ 364



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 211/454 (46%), Gaps = 49/454 (10%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLL-TSFSLPTTTPSSLYYALSIF 74
           +T ++   S  H+ + + +  K  H H         L++  S         S  +A  +F
Sbjct: 84  ATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKFAAGVF 143

Query: 75  SQIPAPPSRVS-NKFIRAISWSHRPKH--ALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
            ++  P + +S    I+A  ++H  KH  A +++ KML+EG+  D +++     A+A   
Sbjct: 144 EKME-PKNLISYTSMIQA--YTHTAKHVEAYELYKKMLSEGIMPDIYAYAA---ALAVCP 197

Query: 132 GLLEGMQVHGLGTKLGFGS--DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            + EG  +H    KLG      P     LVGMYG  G+I  A+ +FD + Y+D+  ++ M
Sbjct: 198 TIREGEAIH---VKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNNM 254

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I  + +     + ++L+ EM+  N+EP+    + +L ACS+ G L+ G+ +H+ +   + 
Sbjct: 255 IAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGALTEGKEIHKKVKGGDQ 314

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             D    + L+ MYA CG    A+ +F+   LKN+   T+++S YS+ GQ          
Sbjct: 315 PTDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSAYSQPGQ---------- 364

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                                 Q  L+ +  M   G+ PD VT  ++ +AC+H G+ D+ 
Sbjct: 365 ---------------------SQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEG 403

Query: 370 QRIHLYIDKNAFGGDLRVN-NAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFA 427
                 + ++ +   L+ +   +ID+  + G L  A E+   M    +V++WT +++A  
Sbjct: 404 LLYFRAMREDHWIVPLQPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACK 463

Query: 428 IHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYA 460
           ++GD +     + ++ +    D      +G +YA
Sbjct: 464 VYGDLKIGARAYKRITELNPPDSGPYLLMGNMYA 497



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 146/319 (45%), Gaps = 38/319 (11%)

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           K   +   +V  Y R   ++DA   F ++ EK+   ++ M+  Y EN+  ++AL+LF + 
Sbjct: 15  KETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKKS 74

Query: 342 QVCGMKPDKVTMLSVISACAHLG--VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
               ++ ++ T ++V+ +CAHLG   L+  + IH +     FG DL V N++I MYAKCG
Sbjct: 75  INEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCG 134

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           S + A  VFE+M  +N+IS+TSMI A+        A   + KM  E I P+   +   L 
Sbjct: 135 SFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAALA 194

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPP--------------------------KYE---HY 490
            C     + EG  I   + N     P                          +Y+    Y
Sbjct: 195 VCP---TIREGEAIHVKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASY 251

Query: 491 GCMVDLFGRANLLREALEL---VETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
             M+ +F + +   +A+ L   +E     PN+  + S++ AC   G +   +   K++  
Sbjct: 252 NNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGALTEGKEIHKKVKG 311

Query: 548 LDPDHDGAL-VLLSNIYAK 565
            D   D A    L N+YAK
Sbjct: 312 GDQPTDVAYNTALVNMYAK 330


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/550 (38%), Positives = 328/550 (59%), Gaps = 1/550 (0%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F  I  P   + N   RA   S  P+ AL++   ML  G+  + F+ P ++KA  RA+ 
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
               + VHG+  KLGF    FV   L+  Y + G + D+R  FD+M+ R++V W+ MI G
Sbjct: 61  WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           Y Q G   E   LF EM+      DE  L+ +L ACS+ GNL +G  VH  ++ +   +D
Sbjct: 121 YAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVD 180

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             L   L+ MY+ CG + MA+  F+ + +K++V  T+M+   ++ G V+ AR  FD M E
Sbjct: 181 LILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPE 240

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           ++ + W+ MIS Y +     EAL L+ +MQ  G  PD+ T++ V+SAC  +G L   + +
Sbjct: 241 RNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMV 300

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           HLYI  N    D+ + N+++DMYAKCG +++A  +F  M  RNV+SW  +I   A+HG A
Sbjct: 301 HLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRA 360

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
            +A+ FF  M   +  P+G+TF+ +L +CSH GL++ G+  F SM + YN+  + EHY C
Sbjct: 361 LDAITFFRSMV-RNTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYAC 419

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           MVDL GR   L +A+ L++ MP  P+VV+WG+L+ ACR+HG +++ +   KQLL+L+   
Sbjct: 420 MVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIKQLLELEGIS 479

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
            G  VL+SN+  +  +W+D+  LRK MKERG  K+   S IE+NN ++EF   D  H+ +
Sbjct: 480 GGLFVLISNLLYETNQWEDMKRLRKLMKERGTRKDMGVSSIEINNSIHEFGVEDIRHESS 539

Query: 613 DQIYEKLNEV 622
            +IY  ++++
Sbjct: 540 SEIYAVVDQL 549



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 145/337 (43%), Gaps = 11/337 (3%)

Query: 55  TSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT 114
           TS     T   S+  A   F  +P   +   N  I       +   AL ++ +M + G  
Sbjct: 216 TSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPA 275

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
            D  +  P+L A  R   L  G  VH          D  +   L+ MY  CG++  A  +
Sbjct: 276 PDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRL 335

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           F +M  R++V W+V+I G   +G   + +  F  M + N  PD +    +LS+CS  G L
Sbjct: 336 FREMCNRNVVSWNVIIGGLAMHGRALDAITFFRSM-VRNTSPDGITFVALLSSCSHGGLL 394

Query: 235 SYGEAVHEFIID-NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVS 292
             G+   E +    NV  +    + ++ +    G ++ A  L  ++ +K ++VV  A++ 
Sbjct: 395 ETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLG 454

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWS--AMISGYA-ENNHPQEALKLFNEMQVCGMKPD 349
                G V+  + +  Q++E + I      +IS    E N  ++  +L   M+  G + D
Sbjct: 455 ACRIHGNVKIGKQVIKQLLELEGISGGLFVLISNLLYETNQWEDMKRLRKLMKERGTRKD 514

Query: 350 -KVTMLSVISACAHLGVLD----QAQRIHLYIDKNAF 381
             V+ + + ++    GV D     +  I+  +D+ ++
Sbjct: 515 MGVSSIEINNSIHEFGVEDIRHESSSEIYAVVDQLSY 551


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/670 (34%), Positives = 361/670 (53%), Gaps = 52/670 (7%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAIS----WSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           A  IF+ +PA      N  +   +    + H   H L + ++M    L  +  +   +L 
Sbjct: 179 AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQM--HRLRPNASTLVALLP 236

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDP----------FVQTGLVGMYGACGKILDARLMF 175
            +A+   L +G  VH    +    S+            + T L+ MY  CG +L AR +F
Sbjct: 237 LLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVF 296

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM---KMSNVEPDEMVLSKILSACSRAG 232
           D M  R+ V WS +I G+       +   LF+ M    +  + P    ++  L AC+   
Sbjct: 297 DAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRACASLD 354

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
           +L  GE +H  +  + V  D    ++L++MYA                            
Sbjct: 355 HLRMGEQLHALLAKSGVHADLTAGNSLLSMYA---------------------------- 386

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
              +AG ++ A  +FD+M  KD + +SA++SGY +N   +EA  +F +MQ C ++PD  T
Sbjct: 387 ---KAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAAT 443

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           M+S+I AC+HL  L   +  H  +       +  + NA+IDMYAKCG ++ +R+VF  M 
Sbjct: 444 MVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMP 503

Query: 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
            R+++SW +MI  + IHG  + A   F +M +    P+GVTFI +L ACSH+GLV EG+ 
Sbjct: 504 SRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKH 563

Query: 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
            F  M + Y + P+ EHY CMVDL  R   L EA E +++MP   +V +W +L+ ACRV+
Sbjct: 564 WFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVY 623

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592
             I+L +  ++ + +L P+  G  VLLSNIY+   R+ +  E+R   K +G  K   CS 
Sbjct: 624 KNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSW 683

Query: 593 IEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652
           IE+N  ++ F+  D+SH Q+ +IY +L+ ++  +K  GY PD    L DLE+EEK + ++
Sbjct: 684 IEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALI 743

Query: 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712
            HSEKLA+ YG++S  +D  I + KNLRVC DCH  IK +S +  R I++RD  RFHH+K
Sbjct: 744 CHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFK 803

Query: 713 DGVCSCKDYW 722
           +G CSC D+W
Sbjct: 804 NGQCSCGDFW 813



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 163/630 (25%), Positives = 289/630 (45%), Gaps = 78/630 (12%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHA--LKVFLKMLNEGLTIDRFSFPPIL 124
           L  A  +F QIP+P  R  N  IRA S S     A  L ++ +ML   +  + ++FP  L
Sbjct: 73  LSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFAL 132

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           KA +       G  +H      G  +D FV T L+ MY  C  + DA  +F  M  RD+V
Sbjct: 133 KACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLV 192

Query: 185 PWSVMIDGYFQNGLFDEVLN--LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
            W+ M+ GY  +G++   +   L  +M+M  + P+   L  +L   ++ G L+ G +VH 
Sbjct: 193 AWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHA 252

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           + I   +  + + +S L                 D VLL      TA++  Y++ G +  
Sbjct: 253 YRIRACLHSNRNSKSKLT----------------DGVLL-----GTALLDMYAKCGSLLY 291

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM---QVCGMKPDKVTMLSVISA 359
           AR +FD M  ++ + WSA+I G+   +   +A  LF  M    +C + P  +   S + A
Sbjct: 292 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRA 349

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           CA L  L   +++H  + K+    DL   N+++ MYAK G ++ A  +F+ M  ++ +S+
Sbjct: 350 CASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSY 409

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR-----EIF 474
           +++++ +  +G A  A + F KM+  +++P+  T + ++ ACSH   +  GR      I 
Sbjct: 410 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 469

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH-- 532
             + +E +I         ++D++ +   +  + ++   MP + ++V W +++A   +H  
Sbjct: 470 RGLASETSI------CNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIAGYGIHGL 522

Query: 533 GEIELAEFAAKQLLQLDPDHDGALVLL-----SNIYAKDKRWQDVGELRKSMKERGILKE 587
           G+   A F     L   PD    + LL     S +  + K W  V      +  R  ++ 
Sbjct: 523 GKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPR--MEH 580

Query: 588 RAC-----SRIEMNNEVYEF----------------LTADRSHKQTDQIYEKLNEVISEL 626
             C     SR    +E YEF                L A R +K  D + +K++ +I EL
Sbjct: 581 YICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNID-LGKKVSRMIQEL 639

Query: 627 KPAG-----YVPDIHSALVDLEDEEKREVI 651
            P G      + +I+SA    ++  +  +I
Sbjct: 640 GPEGTGNFVLLSNIYSAAGRFDEAAEVRII 669



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 194/418 (46%), Gaps = 49/418 (11%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT-IDRFSFPPIL 124
           SL YA  +F  +PA      +  I       R   A  +F  ML +GL  +   S    L
Sbjct: 288 SLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASAL 347

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           +A A  + L  G Q+H L  K G  +D      L+ MY   G I  A  +FD+M+ +D V
Sbjct: 348 RACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTV 407

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            +S ++ GY QNG  +E   +F++M+  NVEPD   +  ++ ACS    L +G   H  +
Sbjct: 408 SYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV 467

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           I   +A +  + + LI MYA CG +D+++ +F+ +  +++V    M++GY          
Sbjct: 468 IIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG--------- 518

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                            I G       +EA  LF EM   G  PD VT + ++SAC+H G
Sbjct: 519 -----------------IHGLG-----KEATALFLEMNNLGFPPDGVTFICLLSACSHSG 556

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAI--IDMYAKCGSLESAREVFERMR-RRNVISWTS 421
           ++ + +    ++ ++ +G   R+ + I  +D+ ++ G L+ A E  + M  R +V  W +
Sbjct: 557 LVIEGKHW-FHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVA 615

Query: 422 MINAFAIH-----GDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREI 473
           ++ A  ++     G   + +I       + + P G   F+ +    S AG  DE  E+
Sbjct: 616 LLGACRVYKNIDLGKKVSRMI-------QELGPEGTGNFVLLSNIYSAAGRFDEAAEV 666


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/692 (33%), Positives = 371/692 (53%), Gaps = 38/692 (5%)

Query: 31  THAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIR 90
            H+   KL H H   N+ +   L+ ++SL +    + +    +F+ I    + V    + 
Sbjct: 184 VHSCAWKLGHDH---NAFVGSGLIDAYSLCSLVSDAEH----VFNGIVRKDAVVWTAMVS 236

Query: 91  AISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGS 150
             S +  P++A +VF KM   G   + F+   +LKA      ++ G  +HG   K    +
Sbjct: 237 CYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDT 296

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           +P V   L+ MY  CG I DARL F+ + Y D++  S MI  Y Q+   ++   LF  + 
Sbjct: 297 EPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLM 356

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
            S+V P+E  LS +L AC+    L +G+ +H   I      D  + + L+  YA C  MD
Sbjct: 357 RSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMD 416

Query: 271 MAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330
            +        LK                       IF  + + + + W+ ++ G++++  
Sbjct: 417 SS--------LK-----------------------IFSSLRDANEVSWNTIVVGFSQSGL 445

Query: 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
            +EAL +F EMQ   M   +VT  SV+ ACA    +  A +IH  I+K+ F  D  + N+
Sbjct: 446 GEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNS 505

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           +ID YAKCG +  A +VF+ +  R++ISW ++I+ +A+HG A +AL  F++M   +++ N
Sbjct: 506 LIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESN 565

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
            +TF+ +L  CS  GLV+ G  +F SM  ++ I P  EHY C+V L GRA  L +AL+ +
Sbjct: 566 DITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFI 625

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
             +P AP+ ++W +L+++C +H  + L  F+A+++L+++P  +   VLLSN+YA      
Sbjct: 626 GDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLD 685

Query: 571 DVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAG 630
            V  LRKSM+  G+ K    S +E+  E++ F      H     I   L  +  +    G
Sbjct: 686 QVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREG 745

Query: 631 YVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIK 690
           Y+PDI+  L D++ E+K  ++  HSE+LAL YGL+ +     IRI+KNLR C DCH    
Sbjct: 746 YIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFT 805

Query: 691 LVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           ++SK+  REI++RD  RFHH++DG CSC DYW
Sbjct: 806 VISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 124/481 (25%), Positives = 209/481 (43%), Gaps = 55/481 (11%)

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA-IARAEGLLEGM 137
           AP  R    +  A+ W      +L +   +      +D F+    L+  IAR +    G 
Sbjct: 25  APHRRGFAAYAAALQWLEDELTSLAILPSVPG----VDSFACARQLQGCIARGDAR-GGR 79

Query: 138 QVHG-LGTKLGFGS-DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
            VHG +  + G G  D F    L+ MYG  G +  AR +FD+M  R++V +  ++  + Q
Sbjct: 80  AVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQ 139

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
            G F+    LF  ++    E ++ VL+ +L              VH          +A +
Sbjct: 140 RGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFV 199

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            S LI  Y+ C  +  A+ +F+ ++ K+ VV TAMVS YS                    
Sbjct: 200 GSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYS-------------------- 239

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
                      EN+ P+ A ++F++M+V G KP+   + SV+ A   L  +   + IH  
Sbjct: 240 -----------ENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGC 288

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
             K     +  V  A++DMYAKCG ++ AR  FE +   +VI  + MI+ +A       A
Sbjct: 289 AIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQA 348

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG---- 491
              F ++   S+ PN  +   VL AC++   +D G++I       +N   K  H      
Sbjct: 349 FELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQI-------HNHAIKIGHESDLFV 401

Query: 492 --CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH--GEIELAEFAAKQLLQ 547
              ++D + + N +  +L++  ++  A N V W +++        GE  L+ F   Q  Q
Sbjct: 402 GNALMDFYAKCNDMDSSLKIFSSLRDA-NEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQ 460

Query: 548 L 548
           +
Sbjct: 461 M 461


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/604 (37%), Positives = 342/604 (56%), Gaps = 42/604 (6%)

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           DR  +  +LK     + L++G  VH    +  F  D  +   L+ MY  CG + +AR +F
Sbjct: 59  DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           +KM  RD V W+ +I GY Q+    + L  F +M      P+E  LS ++ A +      
Sbjct: 119 EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC 178

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            G  +H F +                    CG        FD     N+ V +A++  Y+
Sbjct: 179 CGHQLHGFCV-------------------KCG--------FDS----NVHVGSALLDLYT 207

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           R G ++DA+L+FD +  ++ + W+A+I+G+A  +  ++AL+LF  M   G +P   +  S
Sbjct: 208 RYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYAS 267

Query: 356 VISACAHLGVLDQAQRIHLYIDKN-----AFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           +  AC+  G L+Q + +H Y+ K+     AF G     N ++DMYAK GS+  AR++F+R
Sbjct: 268 LFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAG-----NTLLDMYAKSGSIHDARKIFDR 322

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           + +R+V+SW S++ A+A HG  + A+ +F +M+   I PN ++F+ VL ACSH+GL+DEG
Sbjct: 323 LAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEG 382

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
              +  M  +  I P+  HY  +VDL GRA  L  AL  +E MP  P   IW +L+ ACR
Sbjct: 383 WHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACR 441

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
           +H   EL  +AA+ + +LDPD  G  V+L NIYA   RW D   +RK MKE G+ KE AC
Sbjct: 442 MHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPAC 501

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
           S +E+ N ++ F+  D  H Q ++I  K  EV++++K  GYVPD    +V ++ +E+   
Sbjct: 502 SWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVN 561

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           + +HSEK+AL + L+++   S I I KN+RVC DCH  IKL SKV  REI++RD  RFHH
Sbjct: 562 LQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHH 621

Query: 711 YKDG 714
           +KD 
Sbjct: 622 FKDA 625



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 171/365 (46%), Gaps = 32/365 (8%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           SL  A  +F ++P          I   S   RP  AL  F +ML  G + + F+   ++K
Sbjct: 110 SLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIK 169

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A A       G Q+HG   K GF S+  V + L+ +Y   G + DA+L+FD +  R+ V 
Sbjct: 170 AAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS 229

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ +I G+ +    ++ L LF+ M      P     + +  ACS  G L  G+ VH ++I
Sbjct: 230 WNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMI 289

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
            +   L A   +TL+ MYA  G +  A+ +FD++  +++V   ++++ Y           
Sbjct: 290 KSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAY----------- 338

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
                               A++   +EA+  F EM+  G++P++++ LSV++AC+H G+
Sbjct: 339 --------------------AQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGL 378

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMIN 424
           LD+    +  + K+    +      ++D+  + G L  A    E M      + W +++N
Sbjct: 379 LDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLN 438

Query: 425 AFAIH 429
           A  +H
Sbjct: 439 ACRMH 443



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 151/326 (46%), Gaps = 33/326 (10%)

Query: 208 EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
           +++ S +  D    + +L  C+    L  G  VH  I+ +    D  + +TL+ MYA CG
Sbjct: 50  DLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCG 109

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
            ++ A+ +F+K+  ++ V  T ++SGYS+  +  DA L F+QM+                
Sbjct: 110 SLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLR--------------- 154

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
                            G  P++ T+ SVI A A         ++H +  K  F  ++ V
Sbjct: 155 ----------------FGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHV 198

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
            +A++D+Y + G ++ A+ VF+ +  RN +SW ++I   A       AL  F  M  +  
Sbjct: 199 GSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGF 258

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            P+  ++  +  ACS  G +++G+ + A M         +     ++D++ ++  + +A 
Sbjct: 259 RPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAG-NTLLDMYAKSGSIHDAR 317

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHG 533
           ++ + +    +VV W SL+ A   HG
Sbjct: 318 KIFDRLA-KRDVVSWNSLLTAYAQHG 342



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 118/247 (47%), Gaps = 43/247 (17%)

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           N+++   +  D+    +++  C    +L Q + +H +I ++ F  D+ + N +++MYAKC
Sbjct: 49  NDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKC 108

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           GSLE AR+VFE+M +R+ ++WT++I+ ++ H    +AL+FFN+M      PN  T   V+
Sbjct: 109 GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVI 168

Query: 459 YA--------CSHA---------------------------GLVDEGREIFASMTNEYNI 483
            A        C H                            GL+D+ + +F ++ +  ++
Sbjct: 169 KAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV 228

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETM---PFAPNVVIWGSLMAACRVHGEIELAEF 540
                 +  ++    R +   +ALEL + M    F P+   + SL  AC   G +E  ++
Sbjct: 229 S-----WNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKW 283

Query: 541 AAKQLLQ 547
               +++
Sbjct: 284 VHAYMIK 290


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/576 (39%), Positives = 339/576 (58%), Gaps = 39/576 (6%)

Query: 154 VQTGLVGMYGAC-----GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL-FDEVLNLFE 207
           +  GL  + G C     G I  AR +F ++   +I  W+ MI G  Q+     E + LF 
Sbjct: 21  ISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFR 80

Query: 208 EM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
           +M +     P+   ++ +L ACS    L  G+ VH  ++ +       +++ L+  YA C
Sbjct: 81  KMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKC 140

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
                          +++V+++                 +FD++ +++L+ WS MISGYA
Sbjct: 141 ---------------EDIVLASK----------------VFDEITDRNLVAWSTMISGYA 169

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
                 EAL LF +MQ  G+ PD+VTM+SVISACA  G LD  + +H YI+K     DL 
Sbjct: 170 RIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLE 229

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
           ++ A+++MYAKCG +E A+EVF+ M  ++  +W+SMI   AI+G A +AL  F +M++  
Sbjct: 230 LSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAK 289

Query: 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
           + PN VTFIGVL AC+H+GLV EGR  ++SM  E+ I P  E YGCMVDL  RA+L+ +A
Sbjct: 290 VKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDA 348

Query: 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566
             LVETMP +PN VIW +L+  C+    ++ +E  A++LL+L+P +    +LLSN+YA  
Sbjct: 349 CTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASM 408

Query: 567 KRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL 626
            +W+ + ++RK MK  GI     CS IE++  V+EF+  D SH +  ++ E L ++   +
Sbjct: 409 SQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRV 468

Query: 627 KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCH 686
              G+ P I   L ++ DEEK   +  HSE+LA+ YGL+ +K    IRIVKNLRVC DCH
Sbjct: 469 HAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCH 528

Query: 687 NFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              K++S  Y REI++RDR RFH + +G CSC+D+W
Sbjct: 529 EVTKIISAEYRREIIVRDRVRFHKFVNGSCSCRDFW 564



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/400 (30%), Positives = 199/400 (49%), Gaps = 39/400 (9%)

Query: 28  MKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP-SSLYYALSIFSQIPAPPSRVSN 86
           ++Q HA++L  +    S +  L K++         +P   + YA  +FSQI  P     N
Sbjct: 4   LRQIHARLLTHAMPISSISFGLCKII----GFCALSPYGDIDYARKLFSQIQRPNIFSWN 59

Query: 87  KFIRAISWSHRP-KHALKVFLKMLNEGL-TIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
             IR  S S  P K  + +F KM+  G    + F+   +LKA +    L EG QVH    
Sbjct: 60  SMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVL 119

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           K GFGS PFV+T LV  Y  C  I+ A  +FD+++ R++V WS MI GY + GL +E L 
Sbjct: 120 KSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALG 179

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           LF +M+ + V PDE+ +  ++SAC+ +G L  G+ VH +I    +  D  L + L+ MYA
Sbjct: 180 LFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYA 239

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
            CGC++ AK +FD + +K+    ++M+ G +  G  ED                      
Sbjct: 240 KCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAED---------------------- 277

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
                    AL+ F  M+   +KP+ VT + V+SACAH G++ + +R    + +      
Sbjct: 278 ---------ALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPS 328

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMI 423
           + +   ++D+  +   +E A  + E M    N + W +++
Sbjct: 329 MELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLL 368



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 133/307 (43%), Gaps = 11/307 (3%)

Query: 10  PLTLPTSTAISSCS---SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P T   +  + +CS   +L   +Q HA +LK        +S  ++  L +F         
Sbjct: 90  PNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFG----SSPFVETALVNF---YAKCED 142

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           +  A  +F +I        +  I   +       AL +F  M   G+  D  +   ++ A
Sbjct: 143 IVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISA 202

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            A +  L  G  VH    K    +D  + T LV MY  CG I  A+ +FD M  +D   W
Sbjct: 203 CAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAW 262

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           S MI G   NGL ++ L  F  M+ + V+P+ +    +LSAC+ +G +S G      +++
Sbjct: 263 SSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLE 322

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARL 305
             +     L   ++ +      ++ A  L + + +  N V+   ++ G  ++  ++ + +
Sbjct: 323 FGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEV 382

Query: 306 IFDQMVE 312
           +  +++E
Sbjct: 383 VAQRLLE 389


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/696 (32%), Positives = 367/696 (52%), Gaps = 71/696 (10%)

Query: 97  RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQT 156
           +    L +F +M++E +  D  +   + +A +    L  G  VHG   +    S+  +  
Sbjct: 181 QASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNN 240

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
            L+ MYG  G +  A  +F+ +  R   PW+ MI  Y Q+G F E LN+F +M+   +EP
Sbjct: 241 SLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEP 300

Query: 217 DEMVLSKILSACSRAGNLS--------------------YGEAVHEFIIDNNVALDAHL- 255
           +++ +  +L AC+R G +                      G A+ E   D     D H  
Sbjct: 301 NQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKV 360

Query: 256 -----------QSTLITMYANCGCMDMAKGLFDKVLLKNLV------------------- 285
                       +TLI+++   G  + A  LF ++  + L+                   
Sbjct: 361 FETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFS 420

Query: 286 -------------------VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
                              V  A++  Y++ G V  A  +F+++ EK L+ W++MI G++
Sbjct: 421 QLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFS 480

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
           +N +  EA+ LF++M +  +K DK+T LSVI AC+HLG L++ + +H  +       D  
Sbjct: 481 QNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSY 540

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
           ++ A+ DMY+KCG L+ A  VF+RM  R+++SW+ MI  + +HG     +  FN+M    
Sbjct: 541 LDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSG 600

Query: 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
           I PN +TF+ +L ACSHAG V+EG+  F SM+ E+ + PK++H+ CMVDL  RA  L  A
Sbjct: 601 IKPNDITFMHILSACSHAGAVEEGKLYFNSMS-EFGVEPKHDHFACMVDLLSRAGDLNGA 659

Query: 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566
            +++ ++PF  N  IWG+L+  CR+H  I++ +   K LL +D    G   LLSNIYA++
Sbjct: 660 YQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEE 719

Query: 567 KRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL 626
             W   G++R  MK +G+ K    S IE++ ++Y F   D SH QT  IY  L    S +
Sbjct: 720 GTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLV 779

Query: 627 KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCH 686
               Y  +  +++V      K   ++ HSEKLA+ +G+I+++  + +RI KNLRVC DCH
Sbjct: 780 HAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCH 839

Query: 687 NFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +F K+ SK+  REI++RD  RFH +++G CSC DYW
Sbjct: 840 SFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 875



 Score =  211 bits (538), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 141/514 (27%), Positives = 248/514 (48%), Gaps = 43/514 (8%)

Query: 22  CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPP 81
           C++ T + Q HA +       H   S     L+ S++      SS      +F   P P 
Sbjct: 11  CATSTTLTQLHAHLFITGLHRHPPAS---TKLIESYAQIGIFESSK----RVFDTFPKPD 63

Query: 82  SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT-IDRFSFPPILKAIARAEGLLEGMQVH 140
           S +    I+   W    + A+ ++ +M+ +  T I  F FP +LKA +    L  G +VH
Sbjct: 64  SFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVH 123

Query: 141 GLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200
           G   K GF SD  V+T L+ MYG    + DA   FD M  RD+V WS ++  + QNG   
Sbjct: 124 GRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQAS 183

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
           E L++F +M    VEPD + +  +  ACS  G+L  G +VH +++   +  +A L ++LI
Sbjct: 184 EGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLI 243

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
            MY   G +  A+ LF+ V  +     T M+S Y+++G                  C+  
Sbjct: 244 VMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSG------------------CF-- 283

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
                      QEAL +F +MQ   M+P++VTM+ V+ ACA LG + + + +H ++ + A
Sbjct: 284 -----------QEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRA 332

Query: 381 FGGDLR-VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFF 439
              +L  +  A++++YA  G+L    +VFE ++ + ++SW ++I+ F  +G    AL+ F
Sbjct: 333 MDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLF 392

Query: 440 NKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499
            +M+ + + P+  +    L AC        G +I   +    N     ++   ++D++ +
Sbjct: 393 VQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQN--ALIDMYAK 450

Query: 500 ANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
              +  A ++ E +    ++V W S++     +G
Sbjct: 451 CGFVHSANKMFEKIK-EKSLVTWNSMICGFSQNG 483



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/436 (28%), Positives = 203/436 (46%), Gaps = 40/436 (9%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           + P+ +  A +  L    Q+H      G    P   T L+  Y   G    ++ +FD   
Sbjct: 4   YMPLFRRCATSTTL---TQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFP 60

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGE 238
             D   W V+I  Y   G F+E ++L+ EM   +  +    V   +L ACS  G+LS G 
Sbjct: 61  KPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGG 120

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
            VH  +I      DA ++++L+ MY    C+D                            
Sbjct: 121 KVHGRVIKCGFESDAVVETSLLCMYGEMSCLD---------------------------- 152

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
              DA   FD M  +D++ WS+++  + +N    E L +F++M    ++PD VTMLSV  
Sbjct: 153 ---DACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTE 209

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           AC+ LG L   + +H Y+ +     +  +NN++I MY K G L SA  +FE +  R    
Sbjct: 210 ACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAP 269

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           WT MI+ +   G  + AL  F KM++  ++PN VT +GVL AC+  G V EGR +   + 
Sbjct: 270 WTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVI 329

Query: 479 NEYNIPPKYEHYG-CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE- 536
               + P+ +  G  +++L+     LR+  ++ ET+     ++ W +L++    +G+ E 
Sbjct: 330 RR-AMDPELDFLGPALMELYADTGNLRDCHKVFETIK-EKTILSWNTLISIFTRNGQPEE 387

Query: 537 -LAEFAAKQLLQLDPD 551
            L  F   Q   L PD
Sbjct: 388 ALLLFVQMQTQGLMPD 403



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 182/361 (50%), Gaps = 39/361 (10%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F  I        N  I   + + +P+ AL +F++M  +GL  D +S    L A      
Sbjct: 360 VFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISF 419

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
              G Q+HG   K G  +D FVQ  L+ MY  CG +  A  MF+K+  + +V W+ MI G
Sbjct: 420 SQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICG 478

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           + QNG   E + LF++M M+ V+ D++    ++ ACS  G L  G+ VH  +I   +  D
Sbjct: 479 FSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKD 538

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
           ++L + L  MY+ CG + MA G+FD++  +++V  + M++GY   GQ+            
Sbjct: 539 SYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQI------------ 586

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
                 +A IS             LFN+M   G+KP+ +T + ++SAC+H G +++ +  
Sbjct: 587 ------NATIS-------------LFNQMLGSGIKPNDITFMHILSACSHAGAVEEGK-- 625

Query: 373 HLYIDK-NAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAI 428
            LY +  + FG + + ++   ++D+ ++ G L  A ++   +    N   W +++N   I
Sbjct: 626 -LYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRI 684

Query: 429 H 429
           H
Sbjct: 685 H 685



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 156/347 (44%), Gaps = 36/347 (10%)

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
           LF   L ++   ST ++  Y++ G  E ++ +FD   + D   W  +I  Y      +EA
Sbjct: 24  LFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEA 83

Query: 335 LKLFNEMQVCGM-KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
           + L++EM      +       SV+ AC+  G L    ++H  + K  F  D  V  +++ 
Sbjct: 84  VSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLC 143

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
           MY +   L+ A + F+ M  R+V++W+S++  F  +G A   L  F++M  E+++P+ VT
Sbjct: 144 MYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVT 203

Query: 454 FIGVLYACSHAGLVDEGREIF-----------ASMTNE-----------YNIPPKYEHYG 491
            + V  ACS  G +  GR +            AS+ N            Y+    +E+  
Sbjct: 204 MLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVP 263

Query: 492 C--------MVDLFGRANLLREALELVETM---PFAPNVVIWGSLMAACRVHGEIELAEF 540
           C        M+  + ++   +EAL +   M      PN V    ++ AC   G ++    
Sbjct: 264 CRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRS 323

Query: 541 AAKQLLQ--LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585
               +++  +DP+ D     L  +YA     +D  ++ +++KE+ IL
Sbjct: 324 VHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTIL 370



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 10/210 (4%)

Query: 30  QTHAQILKLSH-SHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKF 88
           Q H  I+K  + +   QN+L+       F         ++ A  +F +I        N  
Sbjct: 425 QIHGYIIKTGNFNDFVQNALIDMYAKCGF---------VHSANKMFEKIKEKSLVTWNSM 475

Query: 89  IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148
           I   S +     A+ +F +M    + +D+ +F  +++A +    L +G  VH      G 
Sbjct: 476 ICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGL 535

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
             D ++ T L  MY  CG++  A  +FD+MS R IV WSVMI GY  +G  +  ++LF +
Sbjct: 536 RKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQ 595

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
           M  S ++P+++    ILSACS AG +  G+
Sbjct: 596 MLGSGIKPNDITFMHILSACSHAGAVEEGK 625


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/533 (39%), Positives = 309/533 (57%), Gaps = 33/533 (6%)

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           GY +  L    + ++  M   +V P++     ++ AC     +  G+ +H  ++      
Sbjct: 68  GYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGA 127

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           D    + LI MY N          F                       +E AR +FD M 
Sbjct: 128 DGFSLNNLIHMYVN----------FQ---------------------SLEQARRVFDNMP 156

Query: 312 EKDL--ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           ++D   + W+AMI+ Y ++N   EA  LF+ M++  +  DK    S++SAC  LG L+Q 
Sbjct: 157 QRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQG 216

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + IH YI+K+    D ++   +IDMY KCG LE A EVF  + ++ + SW  MI   A+H
Sbjct: 217 KWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMH 276

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G    A+  F +M+ E + P+G+TF+ VL AC+H+GLV+EG+  F  MT    + P  EH
Sbjct: 277 GKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEH 336

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           +GCMVDL GRA LL EA +L+  MP  P+  + G+L+ ACR+HG  EL E   K++++L+
Sbjct: 337 FGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELE 396

Query: 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSH 609
           P + G  VLL+N+YA   RW+DV ++RK M +RG+ K    S IE  + V EF+   R+H
Sbjct: 397 PHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAH 456

Query: 610 KQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKK 669
            Q  +IY KL+E++  ++  GYVPD    L D+++EEK   + +HSEKLA+ +GL+ +K 
Sbjct: 457 PQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKP 516

Query: 670 DSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              +RI KNLR+C DCH   KL+SKVY REI+IRDR RFHH++ G CSCKDYW
Sbjct: 517 GETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 202/418 (48%), Gaps = 66/418 (15%)

Query: 18  AISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI 77
            + SCS++  +KQ H+QI++L  S  + N  + +++              + A+S     
Sbjct: 26  GLDSCSTMAELKQYHSQIIRLGLS--ADNDAMGRVIK-------------FCAIS----- 65

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
                   + ++R   W    ++ + ++ +ML++ ++ ++F++PP+++A      + EG 
Sbjct: 66  -------KSGYLR---W-QLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGK 114

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD--IVPWSVMIDGYFQ 195
           Q+H    K GFG+D F    L+ MY     +  AR +FD M  RD   V W+ MI  Y Q
Sbjct: 115 QIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQ 174

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           +    E   LF+ M++ NV  D+ V + +LSAC+  G L  G+ +H +I  + + LD+ L
Sbjct: 175 SNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKL 234

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            +T+I MY  CGC++ A  +F+++  K +     M+ G +  G+ E              
Sbjct: 235 ATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGE-------------- 280

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
                             A++LF EM+   + PD +T ++V+SACAH G++++ +    Y
Sbjct: 281 -----------------AAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQY 323

Query: 376 IDKN-AFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD 431
           + +       +     ++D+  + G LE AR++   M    +     +++ A  IHG+
Sbjct: 324 MTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGN 381



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 4/218 (1%)

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
           SGY      +  + +++ M    + P+K T   +I AC     +++ ++IH ++ K  FG
Sbjct: 67  SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFG 126

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERM--RRRNVISWTSMINAFAIHGDARNALIFFN 440
            D    N +I MY    SLE AR VF+ M  R RN +SW +MI A+        A   F+
Sbjct: 127 ADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFD 186

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500
           +M+ E++  +      +L AC+  G +++G+ I   +     I    +    ++D++ + 
Sbjct: 187 RMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKS-GIELDSKLATTVIDMYCKC 245

Query: 501 NLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
             L +A E+   +P    +  W  ++    +HG+ E A
Sbjct: 246 GCLEKASEVFNELP-QKGISSWNCMIGGLAMHGKGEAA 282


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/652 (36%), Positives = 366/652 (56%), Gaps = 50/652 (7%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           +  I A + + R + A+ ++ +M+ EG+  +  +F   L   A   GL +G  +H     
Sbjct: 80  SSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILA 139

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
                D  +Q  L+ MY  C ++++AR +F+ M  R++  ++ MI  Y Q G   E L L
Sbjct: 140 SKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALEL 199

Query: 206 FEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           F  M K+  +EP+    + IL A    GNL  G  VH            HL S       
Sbjct: 200 FSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHR-----------HLAS------- 241

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
                   +G FD     N+VV  A+V+ Y + G   +AR +FD M  +++I W++MI+ 
Sbjct: 242 --------RG-FDT----NVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAA 288

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           YA++ +PQEAL LF  M V   +P  V+  S ++ACA LG LD+ + IH  +   A    
Sbjct: 289 YAQHGNPQEALNLFKRMDV---EPSGVSFSSALNACALLGALDEGREIHHRV-VEAHLAS 344

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
            ++  +++ MYA+CGSL+ AR VF RM+ R+  S  +MI AF  HG  + AL  + +M+ 
Sbjct: 345 PQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQ 404

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
           E I  +G+TF+ VL ACSH  LV + R+ F S+  ++ + P  EHY CMVD+ GR+  L 
Sbjct: 405 EGIPADGITFVSVLVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLG 464

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
           +A ELVETMP+  + V W +L++ C+ HG++   E AA+++ +L P      V LSN+YA
Sbjct: 465 DAEELVETMPYQTDAVAWMTLLSGCKRHGDLNRGERAARKVFELAPAETLPYVFLSNMYA 524

Query: 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT-------DQIYE 617
             KR+ D   +RK M+ERG+    A S IE++NE++ F +  R  +Q        +++  
Sbjct: 525 AAKRFDDARRVRKEMEERGVTTPVAVSYIEIDNELHMFTSGGRDEQQEGHDGRTMERVRS 584

Query: 618 KLNEVISELKPAGYVPDIHSALVDLE----DEEKREVILWHSEKLALCYGLISSK--KDS 671
            L E++  +K AGYVPD     ++ +    +EEK+  + +HSE+LA+ YGLI++K   DS
Sbjct: 585 LLLELLEPMKQAGYVPDTREVYLEQQGGTSEEEKQRSLCFHSERLAIAYGLIAAKDPDDS 644

Query: 672 -CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             +R+V + RVC DCH+ IKL+S +  + I +RD  RFHH++ G CSC D+W
Sbjct: 645 RPLRVVNSHRVCSDCHSAIKLLSDIIEKTIFVRDGNRFHHFEKGACSCGDHW 696


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/557 (37%), Positives = 337/557 (60%), Gaps = 11/557 (1%)

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLF--DEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
           +FD +   D   ++ +I G+  + L   + +L L+  M  ++V P+      +L AC + 
Sbjct: 79  LFDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRK- 137

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
             + +G  +H  +        +   ++LI MY     ++ A+ +F  +   + V  T+++
Sbjct: 138 --IQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLI 195

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP-DK 350
           SGYS+ G +++A  IF  M +K+   W+AM++ Y + N   EA  LF+ M+       DK
Sbjct: 196 SGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDK 255

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
               +++SAC  LG LDQ + IH YI +N    D ++  AI+DMY KCG LE A +VF  
Sbjct: 256 FVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHS 315

Query: 411 MRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
           +    R + SW  MI   A+HG+   A+  F +M+ + + P+ +TF+ +L AC+H+GLV+
Sbjct: 316 LPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVE 375

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           EGR  F+ M   Y I P+ EH+GCMVDL GRA ++ EA +L++ MP +P+V + G+L+ A
Sbjct: 376 EGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGA 435

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           C+ H  IEL E   +++++L+P++ G  VLL+N+YA   +W+D  ++RK M +RG+ K  
Sbjct: 436 CKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAP 495

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL--VDLEDEE 646
             S IE+   V+EF+  +R+H Q  +++ K+ E++  LK  GYV D +  L   D ++EE
Sbjct: 496 GFSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEE 555

Query: 647 KRE-VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDR 705
             E  + +HSEKLA+ +GL  +K    +RI+KNLR+CEDCH+  KL+S V+ REI++RDR
Sbjct: 556 DGENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDR 615

Query: 706 TRFHHYKDGVCSCKDYW 722
           TRFH +K G CSC+DYW
Sbjct: 616 TRFHRFKMGQCSCQDYW 632



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 202/426 (47%), Gaps = 73/426 (17%)

Query: 22  CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPP 81
           C S++ ++Q H+QI++L  S H  N L+  L+  +F    +T  +L YAL +F  IP P 
Sbjct: 32  CQSMSQLRQYHSQIIRLGLSSH--NHLIPPLI--NFCARASTSDALTYALKLFDSIPQPD 87

Query: 82  SRVSNKFIRAISWSHR-PKHA-LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQV 139
           + + N  I+    S   P ++ L ++  ML   +  + F+FP +L A  + +    GMQ+
Sbjct: 88  AFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQ---HGMQI 144

Query: 140 HGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
           H    K GFG+       L+ MY     + +AR +F  + + D V W+ +I GY + GL 
Sbjct: 145 HAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLI 204

Query: 200 DEVLNLFEEMKMSNVEP--------------------------------DEMVLSKILSA 227
           DE   +F+ M   N                                   D+ V + +LSA
Sbjct: 205 DEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSA 264

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           C+  G L  G+ +HE+I  N + LD+ L + ++ MY  CGC++ A  +F  + L    +S
Sbjct: 265 CTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWIS 324

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           +                             W+ MI G A + + + A++LF EM+   + 
Sbjct: 325 S-----------------------------WNCMIGGLAMHGNGEAAIQLFKEMERQRVA 355

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAR 405
           PD +T L++++ACAH G++++ +    Y+ +  +G + R+ +   ++D+  + G +  AR
Sbjct: 356 PDDITFLNLLTACAHSGLVEEGRNYFSYMIR-VYGIEPRMEHFGCMVDLLGRAGMVPEAR 414

Query: 406 EVFERM 411
           ++ + M
Sbjct: 415 KLIDEM 420


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/519 (41%), Positives = 311/519 (59%), Gaps = 30/519 (5%)

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
            F  M  S V P++     +L AC+   G    G   H   +    A D ++ +TLI MY
Sbjct: 118 FFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHAAALKFGFATDQYVSNTLIHMY 177

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
           +  G      G F                       + DAR +FD+M +  ++ WSAMI 
Sbjct: 178 SCFG------GEF-----------------------LGDARNVFDRMDKSSVVTWSAMIG 208

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           GY       +A+ LF EMQ  G++PD+VT++ V++A A LG L+ A+ +  ++++   G 
Sbjct: 209 GYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGK 268

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
            + + NA+ID  AKCG ++ A  VF+ M  R V+SWTS+I+A A+ G  + A+  F  MK
Sbjct: 269 SVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMK 328

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
              + P+ V FIGVL ACSHAG+VDEG   F SM  EY I PK EHYGCMVD+FGRA ++
Sbjct: 329 TAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMV 388

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563
             A+E + TMP  PN +IW +L+AACR HG +EL E   + LL   P H+   V+LSN+Y
Sbjct: 389 ERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEYPAHEANYVMLSNVY 448

Query: 564 AKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVI 623
           A  +RW++  E+R+ M +RGI K   CS +E++ EV+EF+  D SH Q  +IY  + E+ 
Sbjct: 449 ALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMA 508

Query: 624 SELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCE 683
            ELK  G++      L+DL++E+K   + WHSEKLA+ + L+ +   + +R+VKNLRVC 
Sbjct: 509 RELKHVGHISATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCS 568

Query: 684 DCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           DCH  IK +S VY REI++RDR+RFH +K+G CSC D+W
Sbjct: 569 DCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 607



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 168/356 (47%), Gaps = 45/356 (12%)

Query: 86  NKFIRAISWSHRPKHALKV---FLKMLNEGLTIDRFSFPPILKAIARAEGLLE-GMQVHG 141
           N  IRA + S  P   L+    F  ML   +  ++F+FP +LKA A   G    G+Q H 
Sbjct: 97  NTLIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHA 156

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACGK--ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
              K GF +D +V   L+ MY   G   + DAR +FD+M    +V WS MI GY + GL 
Sbjct: 157 AALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLS 216

Query: 200 DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259
            + + LF EM+ S V PDE+ +  +L+A +  G L     V  F+    +     L + L
Sbjct: 217 SDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTLCNAL 276

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWS 319
           I   A C                               G V+ A  +F  M E+ ++ W+
Sbjct: 277 IDALAKC-------------------------------GDVDGAVAVFQGMEERTVVSWT 305

Query: 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID-- 377
           ++I   A     +EA+ +F  M+  G++PD V  + V++AC+H G++D+    + Y D  
Sbjct: 306 SVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEG---YGYFDSM 362

Query: 378 KNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHG 430
           K  +G D ++ +   ++DM+ + G +E A E    M  + N I W +++ A   HG
Sbjct: 363 KMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHG 418


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/638 (34%), Positives = 361/638 (56%), Gaps = 12/638 (1%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I A+S S R + AL + ++M  +G+ +D  ++   L A AR   L  G Q+H    +
Sbjct: 229 NMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIR 288

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
                DP+V + L+ +Y  CG   +A+ +F+ +  R+ V W+V+I G  Q   F + + L
Sbjct: 289 SLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVEL 348

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           F +M+   +  D+  L+ ++S C    +L  G  +H   + +       + ++LI++YA 
Sbjct: 349 FNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAK 408

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
           CG +  A+ +F  +  +++V  T+M++ YS+ G +  AR  FD M  ++ I W+AM+  Y
Sbjct: 409 CGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAY 468

Query: 326 AENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
            ++   ++ LK+++ M     + PD VT +++   CA +G      +I  +  K     +
Sbjct: 469 IQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILN 528

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
           + V NA I MY+KCG +  A+++F+ +  ++V+SW +MI  ++ HG  + A   F+ M  
Sbjct: 529 VSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLS 588

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
           +   P+ ++++ VL  CSH+GLV EG+  F  MT  + I P  EH+ CMVDL GRA  L 
Sbjct: 589 KGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLT 648

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
           EA +L++ MP  P   +WG+L++AC++HG  ELAE AAK + +LD    G+ +LL+ IY+
Sbjct: 649 EAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYS 708

Query: 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVIS 624
              +  D  ++RK M+++GI K    S +E+ N+V+ F   D SH Q   I  K++E++ 
Sbjct: 709 DAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELME 768

Query: 625 ELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCED 684
           ++   GYV            E  R  I  HSEKLA+ +G++S      I I+KNLR+C D
Sbjct: 769 KIAHLGYV----------RTESPRSEIH-HSEKLAVAFGIMSLPAWMPIHIMKNLRICGD 817

Query: 685 CHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           CH  IKL+S V  RE VIRD  RFHH+K G CSC DYW
Sbjct: 818 CHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 855



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 202/415 (48%), Gaps = 12/415 (2%)

Query: 130 AEGLLEGMQ-VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR-LMFDKMSYRDIVPWS 187
           + G L G + +HG    +G  S  F+Q  L+  Y +CG + DAR L+   +   +++  +
Sbjct: 32  SRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHN 91

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI------LSACSRAGNLSYGEAVH 241
           +M++GY + G   +   LF+ M   +V     ++S          +C   G       + 
Sbjct: 92  IMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQLL 151

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
                 +   D  +++ L+ M+  CG +D A  LF ++    +    +M++GY++   ++
Sbjct: 152 GLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGID 211

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
            A   F+ M E+D++ W+ MI+  +++   +EAL L  EM   G++ D  T  S ++ACA
Sbjct: 212 HAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACA 271

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
            L  L   +++H  + ++    D  V +A+I++YAKCGS + A+ VF  ++ RN +SWT 
Sbjct: 272 RLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTV 331

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA-SMTNE 480
           +I     +     ++  FN+M+ E +  +      ++  C +   +  GR++ +  + + 
Sbjct: 332 LIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSG 391

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           +N      +   ++ L+ +   L+ A E V +     ++V W S++ A    G I
Sbjct: 392 HNRAIVVSN--SLISLYAKCGDLQNA-EFVFSSMSERDIVSWTSMITAYSQIGNI 443



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 160/352 (45%), Gaps = 37/352 (10%)

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           L+  L +C   G L+   A+H  ++   +A    LQ+TL+  Y +CG +  A+ L    +
Sbjct: 23  LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 82

Query: 281 LK-NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ------- 332
            + N++    M++GY++ G + DA  +FD+M  +D+  W+ ++S   + + P        
Sbjct: 83  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMS---DTSRPAGSWMSCG 139

Query: 333 ---------EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
                    + L LF +    G  PD  T L  +      G +D A R+   I++     
Sbjct: 140 ALGCRELAPQLLGLFWKFDFWG-DPDVETAL--VDMFVRCGYVDFASRLFSQIERPT--- 193

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
            +   N+++  YAK   ++ A E FE M  R+V+SW  MI A +  G  R AL    +M 
Sbjct: 194 -IFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMH 252

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY--GCMVDLFGRAN 501
            + +  +  T+   L AC+    +  G+++ A +       P+ + Y    +++L+ +  
Sbjct: 253 RKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSL---PQIDPYVASALIELYAKCG 309

Query: 502 LLREALELVETM----PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
             +EA  +  ++      +  V+I GSL   C     +EL      +L+ +D
Sbjct: 310 SFKEAKRVFNSLQDRNSVSWTVLIGGSLQYEC-FSKSVELFNQMRAELMAID 360


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/659 (33%), Positives = 357/659 (54%), Gaps = 53/659 (8%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I  +    R   A++V   M++ G+  D  +F   L A +R E L  G ++H +  K
Sbjct: 251 NTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLK 310

Query: 146 -LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS--YRDIVPWSVMIDGYFQNGLFDEV 202
                ++ FV + LV MY    K+  AR +FD +    R +  W+ MI GY Q G+ +E 
Sbjct: 311 DADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEA 370

Query: 203 LNLFEEMKM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
           L LF  M+  +   P E  +S +L AC+R+   +  EA+H +++   +A +  +Q+ L+ 
Sbjct: 371 LELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMD 430

Query: 262 MYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
           MYA                               R G+++ AR IF  +  +D++ W+ +
Sbjct: 431 MYA-------------------------------RLGEMDVARRIFAMIDPRDVVSWNTL 459

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMK----------------PDKVTMLSVISACAHLGV 365
           I+G     H  EA +L  EMQ+                    P+ +T+++++  CA L  
Sbjct: 460 ITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAA 519

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
             + + IH Y  ++A   D+ V +A++DMYAKCG L ++R VF+R+ RRNVI+W  +I A
Sbjct: 520 PARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMA 579

Query: 426 FAIHGDARNALIFFNKMK-DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
           + +HG    A+  F++M       PN VTFI  L ACSH+GLVD G E+F  M  ++ + 
Sbjct: 580 YGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVK 639

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
           P  + + C+VD+ GRA  L EA  ++ +M P    V  W SL+ ACR+H  +EL E AA+
Sbjct: 640 PTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAE 699

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
           +L +L+P      VLL NIY+    W     +R  M+ +G+ KE  CS IE++  ++ F+
Sbjct: 700 RLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFM 759

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYG 663
             + SH  + +++  ++ +   ++  GY PD    L D++++EK  ++ +HSEKLA+ +G
Sbjct: 760 AGESSHPASAEVHAHMDALWERMRREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFG 819

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           L+ +   + IR+ KNLRVC DCH   K +SK+  R+IV+RD  RFHH++DG CSC DYW
Sbjct: 820 LLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/480 (26%), Positives = 203/480 (42%), Gaps = 64/480 (13%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGL-TIDRFSFPPILKAIARA---EGLLEGMQVHG 141
           N  I A+    + + AL     ML EG   +  F+   +L A +     +G   G + H 
Sbjct: 137 NSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHA 196

Query: 142 LGTKLGF---GSDPFVQTGLVGMYGACGKILDARLMFDKMSYR------DIVPWSVMIDG 192
              K GF   G + F    L+ MY   G + DA+ +F   +        D+V W+ MI  
Sbjct: 197 FALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISL 256

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
             Q G   E + +  +M    V PD +  +  L ACSR   L+ G  +H  +        
Sbjct: 257 LVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVV-------- 308

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
                                 L D  L  N  V++A+V  Y+   +V  AR +FD + E
Sbjct: 309 ----------------------LKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPE 346

Query: 313 --KDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPDKVTMLSVISACAHLGVLDQA 369
             + L  W+AMI GYA+    +EAL+LF+ M+   G  P + TM  V+ ACA        
Sbjct: 347 PSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGK 406

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + +H Y+ K    G+  V NA++DMYA+ G ++ AR +F  +  R+V+SW ++I    + 
Sbjct: 407 EAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQ 466

Query: 430 GDARNALIFFNKMK----------------DESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           G A  A     +M+                     PN +T + +L  C+       G+EI
Sbjct: 467 GHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEI 526

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
                  + +         +VD++ +   L  +  + + +P   NV+ W  L+ A  +HG
Sbjct: 527 HGYAVR-HALESDIAVGSALVDMYAKCGCLAASRAVFDRLP-RRNVITWNVLIMAYGMHG 584



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/451 (22%), Positives = 201/451 (44%), Gaps = 61/451 (13%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLP 60
           +S   +P  +  ++A+ +CS L  +   ++ HA +LK   +  + NS +   L+  ++  
Sbjct: 274 VSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLK--DADLAANSFVASALVDMYAGN 331

Query: 61  TTTPSSLYYALSIFSQIPAPPSRVS--NKFIRAISWSHRPKHALKVFLKMLNE-GLTIDR 117
               S    A  +F  +P P  ++   N  I   + +   + AL++F +M  E G     
Sbjct: 332 EKVAS----ARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSE 387

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
            +   +L A AR+EG      +HG   K G   + FVQ  L+ MY   G++  AR +F  
Sbjct: 388 TTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAM 447

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE----------------PDEMVL 221
           +  RD+V W+ +I G    G   E   L  EM++ +                  P+ + L
Sbjct: 448 IDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITL 507

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
             +L  C+     + G+ +H + + + +  D  + S L+ MYA CGC+  ++ +FD++  
Sbjct: 508 MTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPR 567

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           +N++    ++  Y   G  ++A  +FD+M             G A               
Sbjct: 568 RNVITWNVLIMAYGMHGLGDEAVALFDEMAA----------GGEA--------------- 602

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIIDMYAKCGS 400
                 P++VT ++ ++AC+H G++D+   +   ++++        ++  ++D+  + G 
Sbjct: 603 -----TPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGR 657

Query: 401 LESAREVFERMR--RRNVISWTSMINAFAIH 429
           L+ A  +   M    + V +W+S++ A  +H
Sbjct: 658 LDEAYSIITSMEPGEQQVSAWSSLLGACRLH 688



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 107/436 (24%), Positives = 177/436 (40%), Gaps = 46/436 (10%)

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVH--GLGTKLGFGSDPFVQTGLVGMYGACG--KILD 170
           +D F+ PP +K+ A          +H   L   L     P V   L+  Y  CG      
Sbjct: 61  LDHFALPPAIKSAAALRDARAARSLHAAALRRALLHRPSPAVGNALLTAYARCGDLDAAL 120

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV-EPDEMVLSKILSACS 229
           A         RD V ++ +I        ++  L+   +M      +     L  +L ACS
Sbjct: 121 ALFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACS 180

Query: 230 RA---GNLSYGEAVHEFIIDNNVALDAHLQ----STLITMYANCGCMDMAKGLFDKVLLK 282
                     G   H F +     LD   +    + L++MYA  G +D A+ LF      
Sbjct: 181 HLPGDDGRRLGREAHAFALKRGF-LDEGRERFPFNALLSMYARLGLVDDAQSLFRTT--- 236

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
                    + +S  G               D++ W+ MIS   +     EA+++  +M 
Sbjct: 237 --------AAAFSPGG--------------GDVVTWNTMISLLVQGGRCAEAVEVLYDMV 274

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA-FGGDLRVNNAIIDMYAKCGSL 401
             G++PD VT  S + AC+ L +L   + +H  + K+A    +  V +A++DMYA    +
Sbjct: 275 SLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKV 334

Query: 402 ESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVL 458
            SAR VF+ +    R +  W +MI  +A  G    AL  F++M+ E+   P+  T  GVL
Sbjct: 335 ASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVL 394

Query: 459 YACSHA-GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
            AC+ + G    G+E       +  +         ++D++ R   +  A  +   M    
Sbjct: 395 PACARSEGFA--GKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIF-AMIDPR 451

Query: 518 NVVIWGSLMAACRVHG 533
           +VV W +L+  C V G
Sbjct: 452 DVVSWNTLITGCVVQG 467


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/625 (35%), Positives = 344/625 (55%), Gaps = 41/625 (6%)

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM 161
           +++FL ML++G   D +S   ++ A      +  G Q+H +  +LG  SD  V  GLV M
Sbjct: 231 VELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDM 290

Query: 162 YGACG---KILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE-VLNLFEEMKMSNVEPD 217
           Y        +  AR +F  M   +++ W+ +I GY Q+G+ +  V+ LF EM   ++ P+
Sbjct: 291 YAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPN 350

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
            +  S +L AC+   +   G  +H  ++  ++A   H+                      
Sbjct: 351 HITYSNLLKACANLSDQDSGRQIHAHVLKTSIA---HVN--------------------- 386

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                  VV  A+VS Y+ +G +E+AR  FDQ+ E +++  S  +     N      ++ 
Sbjct: 387 -------VVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKIEG 439

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
            ++           T  S++SA A +G+L + Q++H    K  F  D  ++N+++ MYA+
Sbjct: 440 MDD------GVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYAR 493

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CG LE A   F+ M+  NVISWTS+I+  A HG A+ AL  F+ M    + PN VT+I V
Sbjct: 494 CGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAV 553

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L ACSH GLV EG+E F SM  ++ + P+ EHY C+VDL  R+ L+ EA + +  MP   
Sbjct: 554 LSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKA 613

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
           + ++W +L++ACR +G  E+ E AA  ++ L+P      VLLSN+YA    W +V  +R 
Sbjct: 614 DALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRS 673

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637
            M+++ + KE   S +++ N ++EF   D SH     IY KL  +I E+K  GYVPD   
Sbjct: 674 LMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSI 733

Query: 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYA 697
            L D+ +E K + +L HSEK+A+ +GLI++     +RI KNLRVC DCH+ IK +SK   
Sbjct: 734 VLHDMSEELKEQYLLQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTG 793

Query: 698 REIVIRDRTRFHHYKDGVCSCKDYW 722
           REI++RD  RFH  KDG+CSC +YW
Sbjct: 794 REIILRDSNRFHRMKDGICSCGEYW 818



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 175/360 (48%), Gaps = 37/360 (10%)

Query: 123 ILKAIARAEGLLEGMQVHG--LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM-S 179
           +L + ARA  L  G  +H   L +++   +D  V   L+ MY  CG +  AR +FD+M  
Sbjct: 46  LLTSAARAGDLRLGRALHRRLLRSEI-LDTDAVVANSLLTMYSKCGAVEAARRVFDQMCG 104

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            RD+V W+ M     +NG   E L L  EM    + P+   L     AC       + + 
Sbjct: 105 VRDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARAC-------FPQE 157

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +  F +   V L   L++       + GC                    A++  ++R G 
Sbjct: 158 L--FRLAGGVVLGFVLKTGFWGTDVSVGC--------------------ALIDMFARNGD 195

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           +  A+ +FD ++E+  + W+ +I+ Y +     + ++LF  M   G +PD  +M S+ISA
Sbjct: 196 LVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISA 255

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG---SLESAREVFERMRRRNV 416
           C  LG +   Q++H    +     D  V+  ++DMYAK     S+E AR+VF+ M R NV
Sbjct: 256 CTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNV 315

Query: 417 ISWTSMINAFAIHG-DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           +SWT++I+ +   G    N +  F +M +ESI PN +T+  +L AC++    D GR+I A
Sbjct: 316 MSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHA 375



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 156/313 (49%), Gaps = 38/313 (12%)

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVA-LDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           +K+L++ +RAG+L  G A+H  ++ + +   DA + ++L+TMY+ CG ++ A+ +FD++ 
Sbjct: 44  AKLLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMC 103

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                              V D            L+ W+AM S  A N   +E+L+L  E
Sbjct: 104 ------------------GVRD------------LVSWTAMASCLARNGAERESLRLLGE 133

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL-YIDKNAF-GGDLRVNNAIIDMYAKC 398
           M   G++P+  T+ +   AC    +   A  + L ++ K  F G D+ V  A+IDM+A+ 
Sbjct: 134 MLELGLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARN 193

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G L +A+ VF+ +  R  + WT +I  +   G A   +  F  M D+  +P+G +   ++
Sbjct: 194 GDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMI 253

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE---ALELVETMPF 515
            AC+  G V  G+++ +       +       G +VD++ +  + R    A ++ +TMP 
Sbjct: 254 SACTELGSVRLGQQLHSVALRLGLVSDSCVSCG-LVDMYAKLKMERSMEHARKVFKTMP- 311

Query: 516 APNVVIWGSLMAA 528
             NV+ W +L++ 
Sbjct: 312 RHNVMSWTALISG 324



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 172/384 (44%), Gaps = 55/384 (14%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSH-HSQNSLLLKLLLTSFSL 59
           L++  +P  +  S  + +C++L+     +Q HA +LK S +H +   + L+ +   S  +
Sbjct: 343 LNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCM 402

Query: 60  PTTTPS-SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
                +    Y  +I S  P   +  +N      S S +        ++ +++G++   F
Sbjct: 403 EEARKAFDQLYETNILSMSPDVETERNNA-----SCSSK--------IEGMDDGVST--F 447

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +F  +L A A    L +G ++H L  K GF SD  +   LV MY  CG + DA   FD+M
Sbjct: 448 TFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEM 507

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
              +++ W+ +I G  ++G   + L++F +M ++ V+P+++    +LSACS  G +  G+
Sbjct: 508 KDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGK 567

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
                          H +S             M K   D  LL  +     +V   +R+G
Sbjct: 568 --------------EHFRS-------------MQK---DHGLLPRMEHYACIVDLLARSG 597

Query: 299 QVEDARLIFDQM-VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP-DKVTMLSV 356
            VE+AR   ++M  + D + W  ++S  A   +    +       V  ++P D    + +
Sbjct: 598 LVEEARQFINEMPCKADALVWKTLLS--ACRTYGNTEIGEIAANHVINLEPRDPAPYVLL 655

Query: 357 ISACAHLGVLDQAQRIH-LYIDKN 379
            +  A  G+ D+  RI  L  DKN
Sbjct: 656 SNLYADAGLWDEVARIRSLMRDKN 679


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/612 (37%), Positives = 350/612 (57%), Gaps = 50/612 (8%)

Query: 113 LTIDR-FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACG-KILD 170
           L  DR F+  P L  I +     +  Q+H    + G   DPF  + L+          LD
Sbjct: 27  LNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLD 86

Query: 171 -ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE-PDEMVLSKILSAC 228
            A+ +FD++ + ++  W+ +I  Y  +    + L +F  M   + + PD+     ++ A 
Sbjct: 87  YAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAA 146

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
           S    L  G+A H  +I   +  D  + ++LI  YA CG + +                 
Sbjct: 147 SELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGL----------------- 189

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
               GY           +F     +D++ W++MI+ + +   P+EAL+LF EM+   +KP
Sbjct: 190 ----GYR----------VFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKP 235

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
           + +TM+ V+SACA     +  + +H YI++N     L ++NA++DMY KCGS+E A+ +F
Sbjct: 236 NGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLF 295

Query: 409 ERMRRRNVISWTSMI------------NAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           ++M  ++++SWT+M+               A+HG  ++A+  F+KM+++ + PN VTF  
Sbjct: 296 DKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTN 355

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
           +L ACSH GLV+EGR  F  M   Y + P  +HY CMVD+ GRA LL EA+EL+E MP A
Sbjct: 356 ILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMA 415

Query: 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
           P   +WG+L+ AC +H  + LAE A  QL++L+P + GA VLLSNIYAK  +W  V  LR
Sbjct: 416 PAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLR 475

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
           K M++ G+ KE  CS IE++  V+EFL  D SH    +IY KL+E+++ L+  GYVP+  
Sbjct: 476 KLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPN-K 534

Query: 637 SALVDLEDEE--KREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
           S L+ L +EE  K + +  HSEKLA+ +GLIS+ +   IRIVKNLRVC DCH+  KLVSK
Sbjct: 535 SHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSK 594

Query: 695 VYAREIVIRDRT 706
           +Y REI++RDR 
Sbjct: 595 LYDREILLRDRV 606



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 132/422 (31%), Positives = 220/422 (52%), Gaps = 33/422 (7%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILK--LSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYAL 71
           PT + I  CS    +KQ HAQ+L+  L     S + L+    L+ F        SL YA 
Sbjct: 37  PTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFP-------SLDYAQ 89

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIARA 130
            +F QIP P     N  IRA + S  P  +L +FL+ML++     D+F+FP ++KA +  
Sbjct: 90  QVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASEL 149

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
           E L  G   HG+  K+  GSD F+   L+  Y  CG++     +F     RD+V W+ MI
Sbjct: 150 EELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMI 209

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
             + Q G  +E L LF+EM+  NV+P+ + +  +LSAC++  +  +G  VH +I  N + 
Sbjct: 210 TAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIX 269

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
               L + ++ MY  CG ++ AK LFDK+  K++V  T M+ GY++ G+ + A+      
Sbjct: 270 ESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQ------ 323

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
                        G A + H ++A+ LF++MQ   +KP+ VT  +++ AC+H+G++++ +
Sbjct: 324 -------------GLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGR 370

Query: 371 RI--HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAFA 427
                + +      G ++    ++D+  + G LE A E+ E+M      S W +++ A  
Sbjct: 371 TFFNQMELVYGVLPG-VKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACT 429

Query: 428 IH 429
           IH
Sbjct: 430 IH 431


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/652 (34%), Positives = 362/652 (55%), Gaps = 34/652 (5%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F Q+P       N  + +     R   AL +   M++ G +++  +F   L A    + 
Sbjct: 318 VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDF 377

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
             +G  +HGL    G   +  +   LV MYG  G++ ++R +  +M  RD+V W+ +I G
Sbjct: 378 FEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGG 437

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL-SYGEAVHEFIIDNNVAL 251
           Y ++   D+ L  F+ M++  V  + + +  +LSAC   G+L   G+ +H +I+      
Sbjct: 438 YAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFES 497

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           D H++++LITMYA CG +  ++ L                               F+ + 
Sbjct: 498 DEHVKNSLITMYAKCGDLSSSQDL-------------------------------FNGLD 526

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
            +++I W+AM++  A + H +E LKL ++M+  G+  D+ +    +SA A L VL++ Q+
Sbjct: 527 NRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQ 586

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           +H    K  F  D  + NA  DMY+KCG +    ++      R++ SW  +I+A   HG 
Sbjct: 587 LHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGY 646

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
                  F++M +  I P  VTF+ +L ACSH GLVD+G   +  +  ++ + P  EH  
Sbjct: 647 FEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCI 706

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           C++DL GR+  L EA   +  MP  PN ++W SL+A+C++HG ++    AA+ L +L+P+
Sbjct: 707 CVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPE 766

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
            D   VL SN++A   RW+DV  +RK M  + I K++ACS +++ ++V  F   DR+H Q
Sbjct: 767 DDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQ 826

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW-HSEKLALCYGLISSKKD 670
           T +IY KL ++   +K +GYV D   AL D  DEE++E  LW HSE+LAL Y L+S+ + 
Sbjct: 827 TMEIYAKLEDIKKLIKESGYVADTSQALQD-TDEEQKEHNLWNHSERLALAYALMSTPEG 885

Query: 671 SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S +RI KNLR+C DCH+  K VS+V  R IV+RD+ RFHH++ G+CSCKDYW
Sbjct: 886 STVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 142/559 (25%), Positives = 257/559 (45%), Gaps = 62/559 (11%)

Query: 16  STAISSCSSL---THMKQTHAQILK--LSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYA 70
           S  ISSC  L   +  +Q   Q++K  L      +NSL+  L          +  ++ YA
Sbjct: 164 SLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISML---------GSMGNVDYA 214

Query: 71  LSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARA 130
             IF Q+    +   N    A + +   + + ++F  M      ++  +   +L  +   
Sbjct: 215 NYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHV 274

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
           +    G  +HGL  K+GF S   V   L+ MY   G+ ++A L+F +M  +D++ W+ ++
Sbjct: 275 DHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLM 334

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
             +  +G   + L L   M  S    + +  +  L+AC        G  +H  ++     
Sbjct: 335 ASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVV----- 389

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
                                  GLF      N ++  A+VS Y + G++ ++R +  QM
Sbjct: 390 ---------------------VSGLF-----YNQIIGNALVSMYGKIGEMSESRRVLLQM 423

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG-VLDQA 369
             +D++ W+A+I GYAE+  P +AL  F  M+V G+  + +T++SV+SAC   G +L++ 
Sbjct: 424 PRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERG 483

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + +H YI    F  D  V N++I MYAKCG L S++++F  +  RN+I+W +M+ A A H
Sbjct: 484 KPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHH 543

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G     L   +KM+   +  +  +F   L A +   +++EG+++         +   +EH
Sbjct: 544 GHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHG-----LAVKLGFEH 598

Query: 490 ----YGCMVDLFGRANLLREALELVETMPFAPNVVI--WGSLMAACRVHGEIE--LAEFA 541
               +    D++ +     E  E+V+ +P + N  +  W  L++A   HG  E   A F 
Sbjct: 599 DSFIFNAAADMYSKCG---EIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFH 655

Query: 542 AKQLLQLDPDHDGALVLLS 560
               + + P H   + LL+
Sbjct: 656 EMLEMGIKPGHVTFVSLLT 674



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/534 (22%), Positives = 233/534 (43%), Gaps = 47/534 (8%)

Query: 9   KPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY 68
           KP +   ++ +++C     M +   Q+    H   +++ LL  + +++  L       L 
Sbjct: 55  KPSSFVIASLVTACGRSGSMFREGVQV----HGFVAKSGLLSDVYVSTAILHLYGVYGLV 110

Query: 69  Y-ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
             +  +F ++P          +   S    P+  + ++  M  EG+  +  S   ++ + 
Sbjct: 111 SCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSC 170

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
              +    G Q+ G   K G  S   V+  L+ M G+ G +  A  +FD+MS RD + W+
Sbjct: 171 GLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWN 230

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
            +   Y QNG  +E   +F  M+  + E +   +S +LS      +  +G  +H  ++  
Sbjct: 231 SIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVV-- 288

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
                                    K  FD V    + V   ++  Y+ AG+  +A L+F
Sbjct: 289 -------------------------KMGFDSV----VCVCNTLLRMYAGAGRSVEANLVF 319

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
            QM  KDLI W+++++ +  +    +AL L   M   G   + VT  S ++AC      +
Sbjct: 320 KQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFE 379

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           + + +H  +  +    +  + NA++ MY K G +  +R V  +M RR+V++W ++I  +A
Sbjct: 380 KGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYA 439

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG-LVDEGREIFASMTNEYNIPPK 486
              D   AL  F  M+ E +  N +T + VL AC   G L++ G+ + A     Y +   
Sbjct: 440 EDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHA-----YIVSAG 494

Query: 487 YEH----YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
           +E        ++ ++ +   L  + +L   +    N++ W +++AA   HG  E
Sbjct: 495 FESDEHVKNSLITMYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHHGHGE 547



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/429 (25%), Positives = 205/429 (47%), Gaps = 34/429 (7%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL-EGMQVHGLGTKLGFGSDPFVQTGLV 159
            ++ F KM + G+    F    ++ A  R+  +  EG+QVHG   K G  SD +V T ++
Sbjct: 42  GMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAIL 101

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
            +YG  G +  +R +F++M  R++V W+ ++ GY   G  +EV+++++ M+   V  +E 
Sbjct: 102 HLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNEN 161

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
            +S ++S+C    + S G  +   ++ + +     ++++LI+M  + G +D         
Sbjct: 162 SMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDY-------- 213

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
                                  A  IFDQM E+D I W+++ + YA+N H +E+ ++F+
Sbjct: 214 -----------------------ANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFS 250

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
            M+    + +  T+ +++S   H+      + IH  + K  F   + V N ++ MYA  G
Sbjct: 251 LMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAG 310

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
               A  VF++M  +++ISW S++ +F   G + +AL     M       N VTF   L 
Sbjct: 311 RSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALA 370

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           AC      ++GR I   +     +         +V ++G+   + E+  ++  MP   +V
Sbjct: 371 ACFTPDFFEKGR-ILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP-RRDV 428

Query: 520 VIWGSLMAA 528
           V W +L+  
Sbjct: 429 VAWNALIGG 437



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 175/373 (46%), Gaps = 42/373 (11%)

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY   G++  AR +FD M  R+ V W+ M+ G  + GL+ E +  F +M    ++P   V
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 221 LSKILSACSRAGNL-SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
           ++ +++AC R+G++   G  VH F+  + +  D ++ + ++ +Y   G +  ++ +F+++
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
             +N+V  T+++ GYS  G+                               P+E + ++ 
Sbjct: 121 PDRNVVSWTSLMVGYSDKGE-------------------------------PEEVIDIYK 149

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
            M+  G+  ++ +M  VIS+C  L      ++I   + K+     L V N++I M    G
Sbjct: 150 GMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMG 209

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           +++ A  +F++M  R+ ISW S+  A+A +G    +   F+ M+    + N  T   +L 
Sbjct: 210 NVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLS 269

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD----LFGRANLLREALELVETMPF 515
              H      GR I   +     +   ++   C+ +    ++  A    EA  + + MP 
Sbjct: 270 VLGHVDHQKWGRGIHGLV-----VKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMP- 323

Query: 516 APNVVIWGSLMAA 528
             +++ W SLMA+
Sbjct: 324 TKDLISWNSLMAS 336



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
           MY K G ++ AR +F+ M  RN +SW +M++     G     + FF KM D  I P+   
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 454 FIGVLYACSHAG-LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
              ++ AC  +G +  EG ++   +     +   Y     ++ L+G   L+  + ++ E 
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTA-ILHLYGVYGLVSCSRKVFEE 119

Query: 513 MPFAPNVVIWGSLMAACRVHGEIE 536
           MP   NVV W SLM      GE E
Sbjct: 120 MP-DRNVVSWTSLMVGYSDKGEPE 142


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/638 (34%), Positives = 361/638 (56%), Gaps = 12/638 (1%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I A+S S R + AL + ++M  +G+ +D  ++   L A AR   L  G Q+H    +
Sbjct: 239 NMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIR 298

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
                DP+V + L+ +Y  CG   +A+ +F+ +  R+ V W+V+I G  Q   F + + L
Sbjct: 299 SLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVEL 358

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           F +M+   +  D+  L+ ++S C    +L  G  +H   + +       + ++LI++YA 
Sbjct: 359 FNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAK 418

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
           CG +  A+ +F  +  +++V  T+M++ YS+ G +  AR  FD M  ++ I W+AM+  Y
Sbjct: 419 CGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAY 478

Query: 326 AENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
            ++   ++ LK+++ M     + PD VT +++   CA +G      +I  +  K     +
Sbjct: 479 IQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILN 538

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
           + V NA I MY+KCG +  A+++F+ +  ++V+SW +MI  ++ HG  + A   F+ M  
Sbjct: 539 VSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLS 598

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
           +   P+ ++++ VL  CSH+GLV EG+  F  MT  + I P  EH+ CMVDL GRA  L 
Sbjct: 599 KGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLT 658

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
           EA +L++ MP  P   +WG+L++AC++HG  ELAE AAK + +LD    G+ +LL+ IY+
Sbjct: 659 EAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYS 718

Query: 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVIS 624
              +  D  ++RK M+++GI K    S +E+ N+V+ F   D SH Q   I  K++E++ 
Sbjct: 719 DAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELME 778

Query: 625 ELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCED 684
           ++   GYV            E  R  I  HSEKLA+ +G++S      I I+KNLR+C D
Sbjct: 779 KIAHLGYV----------RTESPRSEIH-HSEKLAVAFGIMSLPAWMPIHIMKNLRICGD 827

Query: 685 CHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           CH  IKL+S V  RE VIRD  RFHH+K G CSC DYW
Sbjct: 828 CHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 211/458 (46%), Gaps = 69/458 (15%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPIL 124
           SL  A  +F ++P       N  +     + R    L+ F+ M   G ++ + F+F  ++
Sbjct: 86  SLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVM 145

Query: 125 KAIARAEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI-LDARLM-------- 174
           K+   A G  E   Q+ GL  K  F  DP V+T LV M+  CG +   +RL         
Sbjct: 146 KSCG-ALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTI 204

Query: 175 ----------------------FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS 212
                                 F+ M+ RD+V W++MI    Q+G   E L L  EM   
Sbjct: 205 FCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK 264

Query: 213 NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
            V  D    +  L+AC+R  +L +G+ +H  +I +   +D ++ S LI +YA CG    A
Sbjct: 265 GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEA 324

Query: 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
           K +F                               + + +++ + W+ +I G  +     
Sbjct: 325 KRVF-------------------------------NSLQDRNSVSWTVLIGGSLQYECFS 353

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
           ++++LFN+M+   M  D+  + ++IS C +   L   +++H    K+     + V+N++I
Sbjct: 354 KSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLI 413

Query: 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
            +YAKCG L++A  VF  M  R+++SWTSMI A++  G+   A  FF+ M       N +
Sbjct: 414 SLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATR----NAI 469

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
           T+  +L A    G  ++G +++++M ++ ++ P +  Y
Sbjct: 470 TWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTY 507



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 203/441 (46%), Gaps = 38/441 (8%)

Query: 130 AEGLLEGMQ-VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM-------------- 174
           + G L G + +HG    +G  S  F+Q  L+  Y +CG + DAR +              
Sbjct: 16  SRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHN 75

Query: 175 ------------------FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE- 215
                             FD+M  RD+  W+ ++ GYFQ   F + L  F  M  S    
Sbjct: 76  IMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSL 135

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           P+      ++ +C   G       +       +   D  +++ L+ M+  CG +D A  L
Sbjct: 136 PNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRL 195

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           F ++    +    +M++GY++   ++ A   F+ M E+D++ W+ MI+  +++   +EAL
Sbjct: 196 FSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREAL 255

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
            L  EM   G++ D  T  S ++ACA L  L   +++H  + ++    D  V +A+I++Y
Sbjct: 256 GLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELY 315

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           AKCGS + A+ VF  ++ RN +SWT +I     +     ++  FN+M+ E +  +     
Sbjct: 316 AKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALA 375

Query: 456 GVLYACSHAGLVDEGREIFA-SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
            ++  C +   +  GR++ +  + + +N      +   ++ L+ +   L+ A E V +  
Sbjct: 376 TLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSN--SLISLYAKCGDLQNA-EFVFSSM 432

Query: 515 FAPNVVIWGSLMAACRVHGEI 535
              ++V W S++ A    G I
Sbjct: 433 SERDIVSWTSMITAYSQIGNI 453



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 165/368 (44%), Gaps = 43/368 (11%)

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           L+  L +C   G L+   A+H  ++   +A    LQ+TL+  Y +CG +  A+ L    +
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 66

Query: 281 LK-NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
            + N++    M++GY++ G + DA  +FD+M  +D+  W+ ++SGY +     + L+ F 
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 340 EMQVCGMK-PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            M   G   P+  T   V+ +C  LG  + A ++     K  F GD  V  A++DM+ +C
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 399 G-------------------------------SLESAREVFERMRRRNVISWTSMINAFA 427
           G                                ++ A E FE M  R+V+SW  MI A +
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
             G  R AL    +M  + +  +  T+   L AC+    +  G+++ A +       P+ 
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSL---PQI 303

Query: 488 EHY--GCMVDLFGRANLLREALELVETM----PFAPNVVIWGSLMAACRVHGEIELAEFA 541
           + Y    +++L+ +    +EA  +  ++      +  V+I GSL   C     +EL    
Sbjct: 304 DPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYEC-FSKSVELFNQM 362

Query: 542 AKQLLQLD 549
             +L+ +D
Sbjct: 363 RAELMAID 370


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/652 (34%), Positives = 362/652 (55%), Gaps = 34/652 (5%)

Query: 73   IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
            +F Q+P       N  + +     R   AL +   M++ G +++  +F   L A    + 
Sbjct: 408  VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDF 467

Query: 133  LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
              +G  +HGL    G   +  +   LV MYG  G++ ++R +  +M  RD+V W+ +I G
Sbjct: 468  FEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGG 527

Query: 193  YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL-SYGEAVHEFIIDNNVAL 251
            Y ++   D+ L  F+ M++  V  + + +  +LSAC   G+L   G+ +H +I+      
Sbjct: 528  YAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFES 587

Query: 252  DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
            D H++++LITMYA CG +  ++ L                               F+ + 
Sbjct: 588  DEHVKNSLITMYAKCGDLSSSQDL-------------------------------FNGLD 616

Query: 312  EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
             +++I W+AM++  A + H +E LKL ++M+  G+  D+ +    +SA A L VL++ Q+
Sbjct: 617  NRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQ 676

Query: 372  IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
            +H    K  F  D  + NA  DMY+KCG +    ++      R++ SW  +I+A   HG 
Sbjct: 677  LHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGY 736

Query: 432  ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
                   F++M +  I P  VTF+ +L ACSH GLVD+G   +  +  ++ + P  EH  
Sbjct: 737  FEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCI 796

Query: 492  CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
            C++DL GR+  L EA   +  MP  PN ++W SL+A+C++HG ++    AA+ L +L+P+
Sbjct: 797  CVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPE 856

Query: 552  HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
             D   VL SN++A   RW+DV  +RK M  + I K++ACS +++ ++V  F   DR+H Q
Sbjct: 857  DDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQ 916

Query: 612  TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW-HSEKLALCYGLISSKKD 670
            T +IY KL ++   +K +GYV D   AL D  DEE++E  LW HSE+LAL Y L+S+ + 
Sbjct: 917  TMEIYAKLEDIKKLIKESGYVADTSQALQD-TDEEQKEHNLWNHSERLALAYALMSTPEG 975

Query: 671  SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            S +RI KNLR+C DCH+  K VS+V  R IV+RD+ RFHH++ G+CSCKDYW
Sbjct: 976  STVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 1027



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/501 (25%), Positives = 234/501 (46%), Gaps = 48/501 (9%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           YA  IF Q+    +   N    A + +   + + ++F  M      ++  +   +L  + 
Sbjct: 303 YANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLG 362

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
             +    G  +HGL  K+GF S   V   L+ MY   G+ ++A L+F +M  +D++ W+ 
Sbjct: 363 HVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNS 422

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           ++  +  +G   + L L   M  S    + +  +  L+AC        G  +H  ++   
Sbjct: 423 LMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVV--- 479

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
                                    GLF      N ++  A+VS Y + G++ ++R +  
Sbjct: 480 -----------------------VSGLF-----YNQIIGNALVSMYGKIGEMSESRRVLL 511

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG-VLD 367
           QM  +D++ W+A+I GYAE+  P +AL  F  M+V G+  + +T++SV+SAC   G +L+
Sbjct: 512 QMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLE 571

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           + + +H YI    F  D  V N++I MYAKCG L S++++F  +  RN+I+W +M+ A A
Sbjct: 572 RGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANA 631

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            HG     L   +KM+   +  +  +F   L A +   +++EG+++         +   +
Sbjct: 632 HHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHG-----LAVKLGF 686

Query: 488 EH----YGCMVDLFGRANLLREALELVETMPFAPNVVI--WGSLMAACRVHGEIE--LAE 539
           EH    +    D++ +     E  E+V+ +P + N  +  W  L++A   HG  E   A 
Sbjct: 687 EHDSFIFNAAADMYSKCG---EIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCAT 743

Query: 540 FAAKQLLQLDPDHDGALVLLS 560
           F     + + P H   + LL+
Sbjct: 744 FHEMLEMGIKPGHVTFVSLLT 764



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 196/417 (47%), Gaps = 48/417 (11%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           L+ MY   G++  AR +FD M  R+ V W+ M+ G  + GL+ E +  F +M    ++P 
Sbjct: 113 LINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPS 172

Query: 218 EMVLSKILSACSRAGNL-SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
             V++ +++AC R+G++   G  VH F+  + +  D ++ + ++ +Y   G +  ++ +F
Sbjct: 173 SFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVF 232

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVED---------------------------------- 302
           +++  +N+V  T+++ GYS  G+ E+                                  
Sbjct: 233 EEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLGRQIIGQVVKSGLESKLAVENSLI 292

Query: 303 -----------ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
                      A  IFDQM E+D I W+++ + YA+N H +E+ ++F+ M+    + +  
Sbjct: 293 SMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNST 352

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           T+ +++S   H+      + IH  + K  F   + V N ++ MYA  G    A  VF++M
Sbjct: 353 TVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQM 412

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471
             +++ISW S++ +F   G + +AL     M       N VTF   L AC      ++GR
Sbjct: 413 PTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGR 472

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
            I   +     +         +V ++G+   + E+  ++  MP   +VV W +L+  
Sbjct: 473 -ILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP-RRDVVAWNALIGG 527



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
            N +I+MY K G ++ AR +F+ M  RN +SW +M++     G     + FF KM D  I
Sbjct: 110 TNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGI 169

Query: 448 DPNGVTFIGVLYACSHAG-LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
            P+      ++ AC  +G +  EG ++   +     +   Y     ++ L+G   L+  +
Sbjct: 170 KPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTA-ILHLYGVYGLVSCS 228

Query: 507 LELVETMPFAPNVVIWGSLMAACRVHGEIE 536
            ++ E MP   NVV W SLM      GE E
Sbjct: 229 RKVFEEMP-DRNVVSWTSLMVGYSDKGEPE 257


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/615 (34%), Positives = 343/615 (55%), Gaps = 31/615 (5%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           M  E + ++  +   +L A      LL    +HG   +  F     +    +  Y  CG 
Sbjct: 407 MEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGS 466

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
           ++ A  +F  M+ + +  W+ +I G+ QNG   + L+ + EM    + PD+  +  +L A
Sbjct: 467 LVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLA 526

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           C R G L YG+ +H F++ N + +++ +  +L+++Y +C     +K  +           
Sbjct: 527 CGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHC-----SKPFY----------- 570

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
                           R  F++M +K+ +CW+AM+SGY++N  P EAL LF +M   G++
Sbjct: 571 ---------------GRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLE 615

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           PD++ + S++ AC+ L  L   + +H +  KN+   D  V  +++DMYAK G L  ++ +
Sbjct: 616 PDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRI 675

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F R+  + V SW  MI  F +HG    A+  F  MK     P+  TF+GVL AC HAGLV
Sbjct: 676 FNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLV 735

Query: 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
            EG    A M   Y + P+ EHY C++D+ GRA  L EAL  +  MP  P+  IW SL++
Sbjct: 736 SEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLS 795

Query: 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587
           +   + ++E+ E  A++LL L+ +   + +LLSN+YA   +W  V  +R+ MK+  + K+
Sbjct: 796 SSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKD 855

Query: 588 RACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEK 647
             CS IE+  +VY F+  + S+  +D+I +  N +  ++   GY PD    L +LE+ EK
Sbjct: 856 VGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEK 915

Query: 648 REVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTR 707
           R+++  HSEK+A+C+G +++K+ + +RI KNLR+C DCHN  K +SK   REIVIRD  R
Sbjct: 916 RKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKR 975

Query: 708 FHHYKDGVCSCKDYW 722
           FHH+K G+CSC DYW
Sbjct: 976 FHHFKKGICSCGDYW 990



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 187/377 (49%), Gaps = 34/377 (9%)

Query: 101 ALKVFLKMLN-EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           A+  FL++++      D F+FP ++KA      +  G  VHG+  K+G   D FV   ++
Sbjct: 193 AIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMI 252

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS--NVEPD 217
            +YG CG + +A  +FDKM  ++++ W+ +I G+ +NG + E    F  +  S   + PD
Sbjct: 253 ALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPD 312

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
              +  +L  CS  GN+  G  +H   +   +  +  + + LI MY+ CGC+  A  LF 
Sbjct: 313 VATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFR 372

Query: 278 KVLLKNLVVSTAMVSGYSRAGQV-EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           K+  K++V   +M+  YSR G V E   L+    +E++L                     
Sbjct: 373 KIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEEL--------------------- 411

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
                    M+ ++VT+L+++ AC     L   + +H Y  +++F     +NNA I  YA
Sbjct: 412 ---------MEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYA 462

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KCGSL  A  VF  M  ++V SW ++I   A +GD   AL F+ +M    I P+  + + 
Sbjct: 463 KCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVS 522

Query: 457 VLYACSHAGLVDEGREI 473
           +L AC   GL+  G+EI
Sbjct: 523 LLLACGRLGLLQYGKEI 539



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 162/317 (51%), Gaps = 32/317 (10%)

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207
           F  D  + T L+ MY  CG  L++RL+FD++  +++  W+ ++ GY +N L+DE ++ F 
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFL 198

Query: 208 EM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
           E+  ++  +PD      ++ AC+   ++  G++VH   +   + +D  + + +I +Y  C
Sbjct: 199 ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKC 258

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
           G +D A  LFDK+  +NL+   +++ G+S  G   +A   F  ++E          SG  
Sbjct: 259 GFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLE----------SGD- 307

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
                             G+ PD  TM++++  C+  G +D    IH    K     +L 
Sbjct: 308 ------------------GLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELM 349

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNK--MKD 444
           V NA+IDMY+KCG L  A  +F ++  ++V+SW SMI A++  G          K  M++
Sbjct: 350 VCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEE 409

Query: 445 ESIDPNGVTFIGVLYAC 461
           E ++ N VT + +L AC
Sbjct: 410 ELMEVNEVTILNLLPAC 426



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 169/382 (44%), Gaps = 41/382 (10%)

Query: 36  LKLSHSHHSQNSLLLKLLLT-SFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISW 94
           L+  H +  ++S   K L+  +F        SL +A  +F  +        N  I   + 
Sbjct: 435 LRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQ 494

Query: 95  SHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFV 154
           +  P  AL  + +M   G+  D FS   +L A  R   L  G ++HG   + G   + FV
Sbjct: 495 NGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFV 554

Query: 155 QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV 214
              L+ +Y  C K    R  F++M  ++ V W+ M+ GY QN L +E L+LF +M    +
Sbjct: 555 AVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGL 614

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
           EPDE+ ++ IL ACS+   L  G+ VH F + N++  D  +  +L+ MYA  G +  ++ 
Sbjct: 615 EPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQR 674

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
           +F+++  K +     M++G+   GQ                                 +A
Sbjct: 675 IFNRLNGKEVASWNVMITGFGVHGQ-------------------------------GNKA 703

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ-----AQRIHLYIDKNAFGGDLRVNN 389
           ++LF +M+    +PD+ T L V+ AC H G++ +     AQ   LY        +L    
Sbjct: 704 VELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLY----KLEPELEHYA 759

Query: 390 AIIDMYAKCGSLESAREVFERM 411
            +IDM  + G L  A      M
Sbjct: 760 CVIDMLGRAGRLNEALNFINEM 781



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 129/249 (51%), Gaps = 5/249 (2%)

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM- 341
           + V++T +++ YS  G   ++RL+FD+++ K+L  W+A++SGY  N    EA+  F E+ 
Sbjct: 142 DFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELI 201

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
            V   +PD  T   +I AC     +   + +H    K     DL V NA+I +Y KCG L
Sbjct: 202 SVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFL 261

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD--ESIDPNGVTFIGVLY 459
           + A E+F++M  +N+ISW S+I  F+ +G    A   F  + +  + + P+  T + +L 
Sbjct: 262 DEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLP 321

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
            CS  G VD G  +   M  +  +  +      ++D++ +   L EA  L   +    +V
Sbjct: 322 VCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIE-NKSV 379

Query: 520 VIWGSLMAA 528
           V W S++ A
Sbjct: 380 VSWNSMIGA 388



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 17/189 (8%)

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL---- 436
           F GD  +N  +I MY+ CG    +R VF+R+  +N+  W ++++ +      RN L    
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGY-----VRNELYDEA 193

Query: 437 --IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
              F   +      P+  TF  ++ AC+    +  G+ +   M  +  +         M+
Sbjct: 194 IHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHG-MAVKMGLIMDLFVGNAMI 252

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ----LDP 550
            L+G+   L EA+EL + MP   N++ W SL+     +G    A  A + LL+    L P
Sbjct: 253 ALYGKCGFLDEAVELFDKMP-EQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIP 311

Query: 551 DHDGALVLL 559
           D    + LL
Sbjct: 312 DVATMVTLL 320


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/691 (34%), Positives = 365/691 (52%), Gaps = 38/691 (5%)

Query: 32  HAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRA 91
           HA   KL H    +N+ +   L+ ++SL      ++ +A  +F  I    +      +  
Sbjct: 171 HACACKLGHD---RNAFVGTALIDAYSLC----GAVCHARCVFDGIVGKDAVTWTAMVSC 223

Query: 92  ISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSD 151
            S +  P++AL  F KM   G   + F     LKA       L G  +HG   K  + ++
Sbjct: 224 YSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTE 283

Query: 152 PFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
           P V   L+ MY  CG I DA  +F+ + + D++ WS +I  Y Q+   ++   +F  M  
Sbjct: 284 PHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMR 343

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
           S V P+E  LS +L AC+    L  GE +H   I      +  + + L+ MYA C  M  
Sbjct: 344 SFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNM-- 401

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
                                        E++  IF  + + + + W+ +I GY ++   
Sbjct: 402 -----------------------------ENSLEIFSSLQDANEVSWNTIIVGYCQSGFA 432

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           ++AL +F+EM+   M   +VT  SV+ ACA+   +  A +IH  I+K+ F  D  V N++
Sbjct: 433 EDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSL 492

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           ID YAKCG +  A +VFE +   +V+SW S+I+A+A+HG A NAL  F++M    I  N 
Sbjct: 493 IDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKAND 552

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
           VTF+ +L  C   GLV++G  +F SM  ++ I P  EHY C+V L GRA  L +AL+ + 
Sbjct: 553 VTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIG 612

Query: 512 TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
            +P  P+ ++W +L+++C VH  + L  +AA+++L ++P  +   VLLSN+YA      +
Sbjct: 613 DIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMYAAAGILDE 672

Query: 572 VGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY 631
           V   RKSM+  G+ KE   S +E+  EV+ F      H     I   L  +  +    GY
Sbjct: 673 VALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGY 732

Query: 632 VPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKL 691
           VPDI+  L D+++EEK  ++  HSE+LAL YGL  +     IRI+KNLR C DCH   K+
Sbjct: 733 VPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLDCHTMFKV 792

Query: 692 VSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +SK+  REI++RD  RFHH+++G+CSC DYW
Sbjct: 793 ISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 154/359 (42%), Gaps = 52/359 (14%)

Query: 181 RDIVPWSVMIDGYFQNGLF-DEVLNLFEEMKMSNVEP--DEMVLSKILSACSRAGNLSYG 237
           R ++P    I+G     L  +E L   ++   S   P  D    ++ L  C   G+   G
Sbjct: 5   RSLLPTFSQINGLLSRNLAANEALQWLDDELASLALPKLDSYACARFLQRCIARGDARAG 64

Query: 238 EAVHEFIIDNN--VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
            AVH  ++       LD    + L+  YA                               
Sbjct: 65  RAVHARVVQRGGVAQLDTFCANVLLNFYA------------------------------- 93

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
           + G +  AR +FD M E++ + +  ++ GYA     +EAL+LF  +Q  G + +   + +
Sbjct: 94  KLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTT 153

Query: 356 VISACAHLGVLDQAQRIH-----LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           ++     +     A  IH     L  D+NAF     V  A+ID Y+ CG++  AR VF+ 
Sbjct: 154 ILKVLVTMDAPGLACGIHACACKLGHDRNAF-----VGTALIDAYSLCGAVCHARCVFDG 208

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA--CSHAGLVD 468
           +  ++ ++WT+M++ ++ +     AL  F+KM+     PN       L A  C  + L+ 
Sbjct: 209 IVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLG 268

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
           +G     S+   Y+  P     G ++D++ +   + +A  + E +P   +V++W  L++
Sbjct: 269 KGIH-GCSVKTLYDTEPHVG--GALLDMYAKCGDIEDAHAIFEMIPH-DDVILWSFLIS 323


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/638 (35%), Positives = 361/638 (56%), Gaps = 12/638 (1%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I A+S S R + AL + ++M  +G+ +D  ++   L A AR   L  G Q+H    +
Sbjct: 239 NMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIR 298

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
                DP+V + L+ +Y  CG   +A+ +F+ +  R+ V W+V+I G  Q   F + + L
Sbjct: 299 SLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVEL 358

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           F +M+   +  D+  L+ ++S C    +L  G  +H   + +       + ++LI++YA 
Sbjct: 359 FNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAK 418

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
           CG +  A+ +F  +  +++V  T+M++ YS+ G +  AR  FD M  ++ I W+AM+  Y
Sbjct: 419 CGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAY 478

Query: 326 AENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
            ++   ++ LK+++ M     + PD VT +++   CA +G      +I  +  K     +
Sbjct: 479 IQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILN 538

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
           + V NA I MY+KCG +  A+++F+ +  ++V+SW +MI  ++ HG  + A   F+ M  
Sbjct: 539 VSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLS 598

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
           +   P+ ++++ VL  CSH+GLV EG+  F  MT  + I P  EH+ CMVDL GRA  L 
Sbjct: 599 KGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLT 658

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
           EA +L++ MP  P   +WG+L++AC++HG  ELAE AAK + +LD    G+ +LL+ IY+
Sbjct: 659 EAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYS 718

Query: 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVIS 624
              +  D  ++RK M+++GI K    S +E+ N+V+ F   D SH Q   I  KL+E++ 
Sbjct: 719 DAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLDELME 778

Query: 625 ELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCED 684
           ++   GYV            E  R  I  HSEKLA+ +G++S      I I+KNLR+C D
Sbjct: 779 KIAHLGYV----------RTESPRSEIH-HSEKLAVAFGIMSLPAWMPIHIMKNLRICGD 827

Query: 685 CHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           CH  IKL+S V  RE VIRD  RFHH+K G CSC DYW
Sbjct: 828 CHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 211/458 (46%), Gaps = 69/458 (15%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPIL 124
           SL  A  +F ++P       N  +     + R    L+ F+ M   G ++ + F+F  ++
Sbjct: 86  SLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVM 145

Query: 125 KAIARAEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI-LDARLM-------- 174
           K+   A G  E   Q+ GL  K  F  DP V+T LV M+  CG +   +RL         
Sbjct: 146 KSCG-ALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTI 204

Query: 175 ----------------------FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS 212
                                 F+ M+ RD+V W++MI    Q+G   E L L  EM   
Sbjct: 205 FCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK 264

Query: 213 NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
            V  D    +  L+AC+R  +L +G+ +H  +I +   +D ++ S LI +YA CG    A
Sbjct: 265 GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEA 324

Query: 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
           K +F                               + + +++ + W+ +I G  +     
Sbjct: 325 KRVF-------------------------------NSLQDRNSVSWTVLIGGSLQYECFS 353

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
           ++++LFN+M+   M  D+  + ++IS C +   L   +++H    K+     + V+N++I
Sbjct: 354 KSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLI 413

Query: 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
            +YAKCG L++A  VF  M  R+++SWTSMI A++  G+   A  FF+ M       N +
Sbjct: 414 SLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTR----NAI 469

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
           T+  +L A    G  ++G +++++M ++ ++ P +  Y
Sbjct: 470 TWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTY 507



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 203/441 (46%), Gaps = 38/441 (8%)

Query: 130 AEGLLEGMQ-VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM-------------- 174
           + G L G + +HG    +G  S  F+Q  L+  Y +CG + DAR +              
Sbjct: 16  SRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPNVITHN 75

Query: 175 ------------------FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE- 215
                             FD+M  RD+  W+ ++ GYFQ   F + L  F  M  S    
Sbjct: 76  IMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSL 135

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           P+      ++ +C   G       +       +   D  +++ L+ M+  CG +D A  L
Sbjct: 136 PNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRL 195

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           F ++    +    +M++GY++   ++ A   F+ M E+D++ W+ MI+  +++   +EAL
Sbjct: 196 FSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREAL 255

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
            L  EM   G++ D  T  S ++ACA L  L   +++H  + ++    D  V +A+I++Y
Sbjct: 256 GLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELY 315

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           AKCGS + A+ VF  ++ RN +SWT +I     +     ++  FN+M+ E +  +     
Sbjct: 316 AKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALA 375

Query: 456 GVLYACSHAGLVDEGREIFA-SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
            ++  C +   +  GR++ +  + + +N      +   ++ L+ +   L+ A E V +  
Sbjct: 376 TLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSN--SLISLYAKCGDLQNA-EFVFSSM 432

Query: 515 FAPNVVIWGSLMAACRVHGEI 535
              ++V W S++ A    G I
Sbjct: 433 SERDIVSWTSMITAYSQIGNI 453



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 165/368 (44%), Gaps = 43/368 (11%)

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           L+  L +C   G L+   A+H  ++   +A    LQ+TL+  Y +CG +  A+ L    +
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADI 66

Query: 281 LK-NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
            + N++    M++GY++ G + DA  +FD+M  +D+  W+ ++SGY +     + L+ F 
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 340 EMQVCGMK-PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            M   G   P+  T   V+ +C  LG  + A ++     K  F GD  V  A++DM+ +C
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 399 G-------------------------------SLESAREVFERMRRRNVISWTSMINAFA 427
           G                                ++ A E FE M  R+V+SW  MI A +
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
             G  R AL    +M  + +  +  T+   L AC+    +  G+++ A +       P+ 
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSL---PQI 303

Query: 488 EHY--GCMVDLFGRANLLREALELVETM----PFAPNVVIWGSLMAACRVHGEIELAEFA 541
           + Y    +++L+ +    +EA  +  ++      +  V+I GSL   C     +EL    
Sbjct: 304 DPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYEC-FSKSVELFNQM 362

Query: 542 AKQLLQLD 549
             +L+ +D
Sbjct: 363 RAELMAID 370


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/615 (34%), Positives = 342/615 (55%), Gaps = 31/615 (5%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           M  E + ++  +   +L A      LL    +HG   +  F     +    +  Y  CG 
Sbjct: 407 MEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGS 466

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
           ++ A  +F  M+ + +  W+ +I G+ QNG   + L+ + EM    + PD+  +  +L A
Sbjct: 467 LVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLA 526

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           C R G L YG+ +H F++ N + +++ +  +L+++Y +C     +K  +           
Sbjct: 527 CGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHC-----SKPFY----------- 570

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
                           R  F+ M +K+ +CW+AM+SGY++N  P EAL LF +M   G++
Sbjct: 571 ---------------GRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLE 615

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           PD++ + S++ AC+ L  L   + +H +  KN+   D  V  +++DMYAK G L  ++ +
Sbjct: 616 PDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRI 675

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F R+  + V SW  MI  F +HG    A+  F  MK     P+  TF+GVL AC HAGLV
Sbjct: 676 FNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLV 735

Query: 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
            EG    A M   Y + P+ EHY C++D+ GRA  L EAL  +  MP  P+  IW SL++
Sbjct: 736 SEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLS 795

Query: 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587
           +   + ++E+ E  A++LL L+ +   + +LLSN+YA   +W  V  +R+ MK+  + K+
Sbjct: 796 SSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKD 855

Query: 588 RACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEK 647
             CS IE+  +VY F+  + S+  +D+I +  N +  ++   GY PD    L +LE+ EK
Sbjct: 856 VGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEK 915

Query: 648 REVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTR 707
           R+++  HSEK+A+C+G +++K+ + +RI KNLR+C DCHN  K +SK   REIVIRD  R
Sbjct: 916 RKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKR 975

Query: 708 FHHYKDGVCSCKDYW 722
           FHH+K G+CSC DYW
Sbjct: 976 FHHFKKGICSCGDYW 990



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 187/377 (49%), Gaps = 34/377 (9%)

Query: 101 ALKVFLKMLN-EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           A+  FL++++      D F+FP ++KA      +  G  VHG+  K+G   D FV   ++
Sbjct: 193 AIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMI 252

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS--NVEPD 217
            +YG CG + +A  +FDKM  ++++ W+ +I G+ +NG + E    F  +  S   + PD
Sbjct: 253 ALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPD 312

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
              +  +L  CS  GN+  G  +H   +   +  +  + + LI MY+ CGC+  A  LF 
Sbjct: 313 VATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFR 372

Query: 278 KVLLKNLVVSTAMVSGYSRAGQV-EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           K+  K++V   +M+  YSR G V E   L+    +E++L                     
Sbjct: 373 KIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEEL--------------------- 411

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
                    M+ ++VT+L+++ AC     L   + +H Y  +++F     +NNA I  YA
Sbjct: 412 ---------MEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYA 462

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KCGSL  A  VF  M  ++V SW ++I   A +GD   AL F+ +M    I P+  + + 
Sbjct: 463 KCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVS 522

Query: 457 VLYACSHAGLVDEGREI 473
           +L AC   GL+  G+EI
Sbjct: 523 LLLACGRLGLLQYGKEI 539



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 162/317 (51%), Gaps = 32/317 (10%)

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207
           F  D  + T L+ MY  CG  L++RL+FD++  +++  W+ ++ GY +N L+DE ++ F 
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFL 198

Query: 208 EM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
           E+  ++  +PD      ++ AC+   ++  G++VH   +   + +D  + + +I +Y  C
Sbjct: 199 ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKC 258

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
           G +D A  LFDK+  +NL+   +++ G+S  G   +A   F  ++E          SG  
Sbjct: 259 GFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLE----------SGD- 307

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
                             G+ PD  TM++++  C+  G +D    IH    K     +L 
Sbjct: 308 ------------------GLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELM 349

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNK--MKD 444
           V NA+IDMY+KCG L  A  +F ++  ++V+SW SMI A++  G          K  M++
Sbjct: 350 VCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEE 409

Query: 445 ESIDPNGVTFIGVLYAC 461
           E ++ N VT + +L AC
Sbjct: 410 ELMEVNEVTILNLLPAC 426



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 168/382 (43%), Gaps = 41/382 (10%)

Query: 36  LKLSHSHHSQNSLLLKLLLT-SFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISW 94
           L+  H +  ++S   K L+  +F        SL +A  +F  +        N  I   + 
Sbjct: 435 LRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQ 494

Query: 95  SHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFV 154
           +  P  AL  + +M   G+  D FS   +L A  R   L  G ++HG   + G   + FV
Sbjct: 495 NGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFV 554

Query: 155 QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV 214
              L+ +Y  C K    R  F+ M  ++ V W+ M+ GY QN L +E L+LF +M    +
Sbjct: 555 AVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGL 614

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
           EPDE+ ++ IL ACS+   L  G+ VH F + N++  D  +  +L+ MYA  G +  ++ 
Sbjct: 615 EPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQR 674

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
           +F+++  K +     M++G+   GQ                                 +A
Sbjct: 675 IFNRLNGKEVASWNVMITGFGVHGQ-------------------------------GNKA 703

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ-----AQRIHLYIDKNAFGGDLRVNN 389
           ++LF +M+    +PD+ T L V+ AC H G++ +     AQ   LY        +L    
Sbjct: 704 VELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLY----KLEPELEHYA 759

Query: 390 AIIDMYAKCGSLESAREVFERM 411
            +IDM  + G L  A      M
Sbjct: 760 CVIDMLGRAGRLNEALNFINEM 781



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 5/254 (1%)

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM- 341
           + V++T +++ YS  G   ++RL+FD+++ K+L  W+A++SGY  N    EA+  F E+ 
Sbjct: 142 DFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELI 201

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
            V   +PD  T   +I AC     +   + +H    K     DL V NA+I +Y KCG L
Sbjct: 202 SVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFL 261

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD--ESIDPNGVTFIGVLY 459
           + A E+F++M  +N+ISW S+I  F+ +G    A   F  + +  + + P+  T + +L 
Sbjct: 262 DEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLP 321

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
            CS  G VD G  +   M  +  +  +      ++D++ +   L EA  L   +    +V
Sbjct: 322 VCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIE-NKSV 379

Query: 520 VIWGSLMAACRVHG 533
           V W S++ A    G
Sbjct: 380 VSWNSMIGAYSREG 393



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 17/189 (8%)

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL---- 436
           F GD  +N  +I MY+ CG    +R VF+R+  +N+  W ++++ +      RN L    
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGY-----VRNELYDEA 193

Query: 437 --IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
              F   +      P+  TF  ++ AC+    +  G+ +   M  +  +         M+
Sbjct: 194 IHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHG-MAVKMGLIMDLFVGNAMI 252

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ----LDP 550
            L+G+   L EA+EL + MP   N++ W SL+     +G    A  A + LL+    L P
Sbjct: 253 ALYGKCGFLDEAVELFDKMP-EQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIP 311

Query: 551 DHDGALVLL 559
           D    + LL
Sbjct: 312 DVATMVTLL 320


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/614 (35%), Positives = 347/614 (56%), Gaps = 22/614 (3%)

Query: 120 FPPILKAIARAEGLLEGMQVHG-LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +  +LK   +   L EG QVH  + T    G   ++   L+ MY  CG ++DA  +FD+M
Sbjct: 122 YLTLLKFCLKQRALKEGKQVHAHIKTSGSIG--LYISNRLLDMYAKCGSLVDAEKVFDEM 179

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC------SRAG 232
            +RD+  W++MI GY + G F++  NLF++M       D    + I+S C        A 
Sbjct: 180 VHRDLCSWNIMISGYVKGGNFEKARNLFDKMP----NRDNFSWTAIISGCVQHNRPEEAL 235

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL----VVST 288
            L      H++   N   +     S+ +   A    + M K +   ++   L    VV  
Sbjct: 236 ELYRLMQKHDYSKSNKCTI-----SSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWC 290

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
           +++  Y + G +E+AR IFD+M E+D++ W+ MI  Y +N   +E   LF  +    + P
Sbjct: 291 SLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMP 350

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
           +  T   V++ACA L   D  ++IH Y+ +  F       +A++ MY+KCG +E+A+ VF
Sbjct: 351 NDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVF 410

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
           E + + ++ SWTS++  +A HG    AL FF  +      P+G+ FIGVL AC+HAGLVD
Sbjct: 411 EILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVD 470

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           +G E F S+  ++ +    +HY C++DL  RA    EA  ++  MP  P+  IW +L+  
Sbjct: 471 KGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGG 530

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
           CR+HG +ELA+ AAK L +++P++    V L+NIYA      +   +R++M  RGI+K+ 
Sbjct: 531 CRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKP 590

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
             S IE+  EV+ F   D SH ++ +I E L+E+   +K  GYVPD +  L D+E E+K 
Sbjct: 591 GMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVPDTNFVLHDVELEQKE 650

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
           E + +HSEKLA+ +G+IS+   + I++ KNLR C DCHN IK +S +  R+I++RD  RF
Sbjct: 651 ENLSYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRF 710

Query: 709 HHYKDGVCSCKDYW 722
           H ++ G CSCKDYW
Sbjct: 711 HCFEGGSCSCKDYW 724



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 33/230 (14%)

Query: 97  RPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQT 156
           R +    +F  ++N  +  + F+F  +L A A       G Q+H    ++GF S     +
Sbjct: 332 RREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAAS 391

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
            LV MY  CG I +A+ +F+ +   D+  W+ ++ GY Q+G  D+ L+ FE +  S  +P
Sbjct: 392 ALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKP 451

Query: 217 DEMVLSKILSACSRAGNLSYG-EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           D +    +LSAC+ AG +  G E  H          + H  +  I  YA           
Sbjct: 452 DGIAFIGVLSACAHAGLVDKGLEYFHSI-------KEKHGLTRTIDHYA----------- 493

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM-VEKDLICWSAMISG 324
                         ++   +RAGQ  +A  I ++M ++ D   W+A++ G
Sbjct: 494 -------------CIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGG 530


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/635 (34%), Positives = 346/635 (54%), Gaps = 63/635 (9%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA--------------- 164
           F P +++    + L  G Q+H L    GF SD F+   L+ MY                 
Sbjct: 47  FTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMR 106

Query: 165 ----------------CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
                            G +++AR +FD+M  R +  W+ MI G  Q    +E L+LF E
Sbjct: 107 KKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFRE 166

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M      PDE  L  + S  +   ++S G+ +H + I   + LD                
Sbjct: 167 MHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELD---------------- 210

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
                          LVV++++   Y R G+++D  ++   M  ++L+ W+ +I G A+N
Sbjct: 211 ---------------LVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQN 255

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
             P+  L L+  M++ G +P+K+T ++V+S+C+ L +  Q Q+IH    K      + V 
Sbjct: 256 GCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVV 315

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES-I 447
           +++I MY+KCG L  A + F      + + W+SMI+A+  HG    A+  FN M +++ +
Sbjct: 316 SSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNM 375

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
           + N V F+ +LYACSH+GL D+G E+F  M  +Y   P  +HY C+VDL GRA  L +A 
Sbjct: 376 EINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAE 435

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
            ++ +MP   ++VIW +L++AC +H   E+A+   K++LQ+DP+     VLL+N++A  K
Sbjct: 436 AIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAK 495

Query: 568 RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627
           RW+DV E+RKSM+++ + KE   S  E   EV++F   DRS  ++ +IY  L E+  E+K
Sbjct: 496 RWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMK 555

Query: 628 PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHN 687
             GY PD  S L D+++EEK   ++ HSEKLA+ + L+   + + IRI+KNLRVC DCH 
Sbjct: 556 LKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHV 615

Query: 688 FIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             K +S +  REI +RD +RFHH+ +G CSC DYW
Sbjct: 616 AFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 172/343 (50%), Gaps = 7/343 (2%)

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           F+  ++ N+  +  + +  + +C+   +L  G+ +H  ++ +  + D  + + L++MY+ 
Sbjct: 33  FQRFRL-NIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSK 91

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
            G    A  ++ ++  KN + S  +++GY RAG + +AR +FD+M ++ L  W+AMI+G 
Sbjct: 92  LGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGL 151

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385
            +    +E L LF EM   G  PD+ T+ SV S  A L  +   Q+IH Y  K     DL
Sbjct: 152 IQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDL 211

Query: 386 RVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDE 445
            VN+++  MY + G L+    V   M  RN+++W ++I   A +G     L  +  MK  
Sbjct: 212 VVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKIS 271

Query: 446 SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505
              PN +TF+ VL +CS   +  +G++I A    +            ++ ++ +   L +
Sbjct: 272 GCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAI-KIGASSVVAVVSSLISMYSKCGCLGD 330

Query: 506 ALELVETMPFAPNVVIWGSLMAACRVHGE----IELAEFAAKQ 544
           A +         + V+W S+++A   HG+    IEL    A+Q
Sbjct: 331 AAKAFSERE-DEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQ 372



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 177/386 (45%), Gaps = 34/386 (8%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           L  A  +F ++P       N  I  +      +  L +F +M   G + D ++   +   
Sbjct: 126 LVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSG 185

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
            A    +  G Q+HG   K G   D  V + L  MY   GK+ D  ++   M  R++V W
Sbjct: 186 SAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAW 245

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +I G  QNG  + VL L++ MK+S   P+++    +LS+CS       G+ +H   I 
Sbjct: 246 NTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIK 305

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
              +    + S+LI+MY+ CGC+  A   F +   ++ V+ ++M+S Y   GQ ++A  +
Sbjct: 306 IGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIEL 365

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F+ M E+                                M+ ++V  L+++ AC+H G+ 
Sbjct: 366 FNTMAEQT------------------------------NMEINEVAFLNLLYACSHSGLK 395

Query: 367 DQA-QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMIN 424
           D+  +   + ++K  F   L+    ++D+  + G L+ A  +   M  + +++ W ++++
Sbjct: 396 DKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLS 455

Query: 425 AFAIHGDARNALIFFNKMKDESIDPN 450
           A  IH +A  A   F ++    IDPN
Sbjct: 456 ACNIHKNAEMAQRVFKEILQ--IDPN 479


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/540 (39%), Positives = 317/540 (58%), Gaps = 39/540 (7%)

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP-DEMVLSKILSACSRAGNLSYGEAVHEFI 244
           W+ MI GY ++    E + L+  M    + P +      +L++C+R  +L  G  VH  I
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           I +    D                               L V  A++  YS  G +  AR
Sbjct: 62  IKHGFESD-------------------------------LFVRNALIHLYSVFGNLNLAR 90

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            +FD+ + +DL+ ++ MI GYAE N P+ AL LF EMQ      D+VT+++V+SACA LG
Sbjct: 91  TLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQ----NSDEVTLVAVLSACARLG 146

Query: 365 VLDQAQRI-HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVISWTS 421
             D  +R+ H YI+   F  +  +  A++DMYAKCGS++SA E+F R+ +  +    + S
Sbjct: 147 AFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNS 206

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI   A HG    A+  F ++    + P+ VTF+GVL AC H+GL++EG+++F SM N Y
Sbjct: 207 MIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAY 266

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
            I P+ EHYGCMVDL GR   L EA +LV+ MPF  N VIW +L++ACR HG +++ E A
Sbjct: 267 GIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIA 326

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
            ++LL+++  H    VLLSNI A   +W++  ++RK M++ GI K    S IE+   ++ 
Sbjct: 327 GQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHR 386

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           F+ +D+SH Q  +I   L ++   LK AGYVP+    + D+++EEK  V+ +HSEKLAL 
Sbjct: 387 FVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALA 446

Query: 662 YGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
           +GL+       IRIVKNLR+C DCH   KLVS++Y REI +RD  RFHH+++G CSC D+
Sbjct: 447 FGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 185/353 (52%), Gaps = 39/353 (11%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIARAEGLLEGMQVHGLGT 144
           N  IR  S S  P+ A+ +++ M+ +G+   + F+FP +L + AR   L  G +VH    
Sbjct: 3   NTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHII 62

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           K GF SD FV+  L+ +Y   G +  AR +FD+   RD+V ++ MI GY +    +  L 
Sbjct: 63  KHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALC 122

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV-ALDAHLQSTLITMY 263
           LF EM+ S    DE+ L  +LSAC+R G    G+ ++   I+N V   +  L + ++ MY
Sbjct: 123 LFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMY 178

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
           A CG +D A  +F +       V   M +G+           +F+ M           I+
Sbjct: 179 AKCGSIDSALEIFRR-------VGKNMKTGF-----------VFNSM-----------IA 209

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           G A++   + A+ +F E+   G+KPD+VT + V+ AC H G++++ +++   +  NA+G 
Sbjct: 210 GLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESM-FNAYGI 268

Query: 384 DLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDAR 433
             ++ +   ++D+  + G LE A ++ ++M    N + W ++++A   HG+ +
Sbjct: 269 KPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVK 321


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/718 (34%), Positives = 387/718 (53%), Gaps = 44/718 (6%)

Query: 13  LPTSTAISSCSSLTHMKQTHAQILKLSHSH-HSQNSLLLKLLLTSFSLPTTTPSSLYYAL 71
           +PTST +S+   L + K       +    H H  N      L+++++      S +  A 
Sbjct: 39  VPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLISAYA----KESYVEVAH 94

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
            +F ++P P S   N  I A +     + A ++FL+M    L +D F+   I+ A     
Sbjct: 95  QLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGINV 154

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY-RDIVPWSVMI 190
           GL+   Q+H L    G  S   V   L+  Y   G + +AR +F  +S  RD V W+ M+
Sbjct: 155 GLIR--QLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMV 212

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
             Y Q+    + L L+ EM +  +  D   L+ +L+A +   +L  G   H  +I +   
Sbjct: 213 VAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYH 272

Query: 251 LDAHLQSTLITMYANC-GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            ++H+ S LI +Y+ C GCM   + +FD++   +LV+   M+SGYS    + D       
Sbjct: 273 QNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSD------- 325

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                                  EAL+ F ++Q  G +PD  +++ VISAC+++    Q 
Sbjct: 326 -----------------------EALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQG 362

Query: 370 QRIH-LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
           +++H L +  +     + VNNA+I MY+KCG+L  A+ +F+ M   N +S+ SMI  +A 
Sbjct: 363 RQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQ 422

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG    +L  F +M +    P  +TFI VL AC+H G V++G+  F  M  ++ I P+  
Sbjct: 423 HGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAG 482

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           H+ CM+DL GRA  L EA  L+ET+PF P    W +L+ ACR+HG +ELA  AA +LLQL
Sbjct: 483 HFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQL 542

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           DP +    V+L+NIY+ + R QD   +RK M++RG+ K+  CS IE+N  ++ F+  D  
Sbjct: 543 DPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTF 602

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLED---EEKREVILW-HSEKLALCYGL 664
           H    +I E L E++ ++K  GY P++ SA V  +D   + + E+ L  HSEKLA+ +GL
Sbjct: 603 HPMIKKIQEYLEEMMRKIKKVGYTPEVRSASVGGDDRVWQREEELRLGHHSEKLAVSFGL 662

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +S+++   I + KNLR+C DCHN IK +S+V  REI +RD  RFH +KDG CSC  YW
Sbjct: 663 MSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 216/437 (49%), Gaps = 12/437 (2%)

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           SF   LK       L  G  +H L  K    +  ++    + +Y  C ++  AR +FD  
Sbjct: 10  SFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
              ++  ++ +I  Y +    +    LF+EM     +PD +  + +++A +R G+     
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMP----QPDSVSYNTLIAAYARRGDTQPAF 125

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYA-NCGCMDMAKGLFDKVLLKNLV-VSTAMVSGYSR 296
            +   + +  + +D    S +IT    N G +     L     L + V V  A+++ YS+
Sbjct: 126 QLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSK 185

Query: 297 AGQVEDARLIFDQMVE-KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
            G +++AR IF  + E +D + W++M+  Y ++    +AL+L+ EM V G+  D  T+ S
Sbjct: 186 NGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLAS 245

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS-LESAREVFERMRRR 414
           V++A  ++  L    + H  + K+ +  +  V + +ID+Y+KCG  +   R+VF+ +   
Sbjct: 246 VLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNP 305

Query: 415 NVISWTSMINAFAIHGD-ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           +++ W +MI+ ++++ D +  AL  F +++     P+  + + V+ ACS+     +GR++
Sbjct: 306 DLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQV 365

Query: 474 FASMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532
              +  + +IP  +      ++ ++ +   LR+A  L +TMP   N V + S++A    H
Sbjct: 366 HG-LALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQH 423

Query: 533 GEIELAEFAAKQLLQLD 549
           G    +    +++L++D
Sbjct: 424 GMGFQSLHLFQRMLEMD 440


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/709 (32%), Positives = 380/709 (53%), Gaps = 43/709 (6%)

Query: 17  TAISSCSSLTHMKQTHAQILKLSHSHH--SQNSLLLKLLLTSFSLPTTTPSSLYYALSIF 74
           +  +   S+  ++Q H+ ++KL +       NSLL     T          SL  A  +F
Sbjct: 206 SGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTR---------SLGLAFQLF 256

Query: 75  SQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL 134
           + IP   S   N  +   S     + A+ +F KM   G     F+F  IL A  + + + 
Sbjct: 257 NDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIE 316

Query: 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
            G QVHG   K  F  + FV   L+  Y    ++++A  +F +M   D + ++V++  Y 
Sbjct: 317 FGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYA 376

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
            NG   E L LF+E++ +  +      + +LS  + + NL  G  +H   I  +   +  
Sbjct: 377 WNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEIL 436

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           + ++L+ MYA C                               G+  +A  IF  +  + 
Sbjct: 437 VGNSLVDMYAKC-------------------------------GEFGEANRIFSDLAIQS 465

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
            + W+AMIS Y +    ++ LKLF EMQ   +  D  T  S++ ACA L  L   +++H 
Sbjct: 466 SVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHS 525

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           +I  + +  ++   +A++DMYAKCGS++ A ++F+ M  RN +SW ++I+A+A +GD   
Sbjct: 526 HIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDC 585

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
            L  F +M    + P+ V+ + +L ACSH GLV+EG + F SMT  Y + PK EHY   +
Sbjct: 586 TLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTI 645

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           D+  R     EA +L+  MPF P+ ++W S++ +C +H   ELA+ AA QL  +    D 
Sbjct: 646 DMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDA 705

Query: 555 A-LVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTD 613
           A  V +SNIYA    W +VG+++K+M+ERG+ K  A S +E+ ++ + F   D++H Q  
Sbjct: 706 APYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMR 765

Query: 614 QIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCI 673
           +I +KL+E+  ++   GY PD   AL ++++E K E + +HSE++A+ + LIS+ + S I
Sbjct: 766 EIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALISTPEGSPI 825

Query: 674 RIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            ++KNLR C DCH  IK++SK+  REI +RD +RFHH++DG C+C+DYW
Sbjct: 826 LVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCRDYW 874



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 111/463 (23%), Positives = 217/463 (46%), Gaps = 35/463 (7%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + A  +F++M   G+  D  S   +L      + + E  QVH    KLG+ S   V   L
Sbjct: 180 REAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSL 239

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           +  Y     +  A  +F+ +  RD V ++ ++ GY + G   E +NLF +M+     P E
Sbjct: 240 LDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTE 299

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
              + IL+A  +  ++ +G+ VH F++  N                              
Sbjct: 300 FTFAAILTAGIQLDDIEFGQQVHGFVVKCN------------------------------ 329

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
             + N+ V+ A++  YS+  +V +A  +F +M E D I ++ +++ YA N   +E+L+LF
Sbjct: 330 -FVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELF 388

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            E+Q  G         +++S  A    LD  ++IH          ++ V N+++DMYAKC
Sbjct: 389 KELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKC 448

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G    A  +F  +  ++ + WT+MI+++   G   + L  F +M+   I  +  T+  ++
Sbjct: 449 GEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIV 508

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            AC+    +  G+++ + +     I   +     +VD++ +   +++AL++ + MP   N
Sbjct: 509 RACASLASLTLGKQLHSHIIGSGYISNVFSG-SALVDMYAKCGSIKDALQMFQEMP-VRN 566

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQ--LDPDHDGALVLL 559
            V W +L++A   +G+ +      +++++  L PD    L +L
Sbjct: 567 SVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSIL 609



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 175/370 (47%), Gaps = 38/370 (10%)

Query: 153 FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS 212
           F    ++  Y   G + +AR +FD M  R  V W+++I GY QN  F E   LF EM   
Sbjct: 133 FSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRH 192

Query: 213 NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272
            ++PD + L+ +LS  +   +++    VH  +I   +  D+                   
Sbjct: 193 GIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVI--KLGYDS------------------- 231

Query: 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
                      LVVS +++  Y +   +  A  +F+ + E+D + ++A+++GY++    +
Sbjct: 232 ----------TLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNR 281

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
           EA+ LF +MQ  G +P + T  ++++A   L  ++  Q++H ++ K  F  ++ V NA++
Sbjct: 282 EAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALL 341

Query: 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
           D Y+K   +  A ++F  M   + IS+  ++  +A +G  + +L  F +++    D    
Sbjct: 342 DFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNF 401

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL------FGRANLLREA 506
            F  +L   + +  +D GR+I  S T   +   +      +VD+      FG AN +   
Sbjct: 402 PFATLLSIAAISLNLDIGRQIH-SQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSD 460

Query: 507 LELVETMPFA 516
           L +  ++P+ 
Sbjct: 461 LAIQSSVPWT 470



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 143/271 (52%), Gaps = 1/271 (0%)

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           II      + +  + L+  +   G ++ A+ LFD++  KN+  +  M+ GY ++G + +A
Sbjct: 92  IIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEA 151

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
           R +FD M ++  + W+ +I GYA+NN  +EA  LF EM   G+ PD V++ +++S     
Sbjct: 152 RTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEF 211

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
             +++ +++H ++ K  +   L V+N+++D Y K  SL  A ++F  +  R+ +++ +++
Sbjct: 212 DSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALL 271

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
             ++  G  R A+  F KM++    P   TF  +L A      ++ G+++   +  + N 
Sbjct: 272 TGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVV-KCNF 330

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMP 514
                    ++D + + + + EA +L   MP
Sbjct: 331 VWNVFVANALLDFYSKHDRVVEASKLFYEMP 361


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/714 (33%), Positives = 382/714 (53%), Gaps = 40/714 (5%)

Query: 11  LTLPTS-TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYY 69
           +TL T  +  +   S+  + Q H  ++K+ +       ++   LL S+        SL  
Sbjct: 140 ITLATLLSGFTEFESVNEVAQVHGHVVKVGYD---STLMVCNSLLDSY----CKTRSLGL 192

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F  +    +   N  +   S       A+ +F KM + G     F+F  +L A  +
Sbjct: 193 ACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQ 252

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            + +  G QVH    K  F  + FV   L+  Y    +I++AR +F +M   D + ++V+
Sbjct: 253 MDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVL 312

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I     NG  +E L LF E++ +  +  +   + +LS  + + NL  G  +H   I  + 
Sbjct: 313 ITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDA 372

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             +  + ++L+ MYA C                                +  +A  IF  
Sbjct: 373 ISEVLVGNSLVDMYAKCD-------------------------------KFGEANRIFAD 401

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           +  +  + W+A+ISGY +    ++ LKLF EM    +  D  T  S++ ACA+L  L   
Sbjct: 402 LAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLG 461

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           +++H  I ++    ++   +A++DMYAKCGS++ A ++F+ M  RN +SW ++I+A+A +
Sbjct: 462 KQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQN 521

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           GD  +AL  F +M    + PN V+F+ +L ACSH GLV+EG + F SMT  Y + P+ EH
Sbjct: 522 GDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREH 581

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549
           Y  MVD+  R+    EA +L+  MPF P+ ++W S++ +CR+H   ELA  AA QL  + 
Sbjct: 582 YASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMK 641

Query: 550 PDHDGA-LVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
              D A  V +SNIYA    W  VG+++K+++ERGI K  A S +E+  + + F   D S
Sbjct: 642 GLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTS 701

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
           H QT +I  KL+E+  +++  GY PD   AL ++++E K E + +HSE++A+ + LIS+ 
Sbjct: 702 HPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLKYHSERIAIAFALISTP 761

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           K S I ++KNLR C DCH  IK++SK+  REI +RD +RFHH+ DG CSCKDYW
Sbjct: 762 KGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTDGSCSCKDYW 815



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 113/496 (22%), Positives = 225/496 (45%), Gaps = 35/496 (7%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           +L  A S+F  +           I   +  +R   A  +F  M   G+  D  +   +L 
Sbjct: 88  NLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLS 147

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
                E + E  QVHG   K+G+ S   V   L+  Y     +  A  +F  M+ +D V 
Sbjct: 148 GFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVT 207

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           ++ ++ GY + G   + +NLF +M+     P E   + +L+A  +  ++ +G+ VH F++
Sbjct: 208 FNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVV 267

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
             N                                + N+ V+ A++  YS+  ++ +AR 
Sbjct: 268 KCN-------------------------------FVWNVFVANALLDFYSKHDRIVEARK 296

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +F +M E D I ++ +I+  A N   +E+L+LF E+Q       +    +++S  A+   
Sbjct: 297 LFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLN 356

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L+  ++IH          ++ V N+++DMYAKC     A  +F  +  ++ + WT++I+ 
Sbjct: 357 LEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISG 416

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
           +   G   + L  F +M    I  +  T+  +L AC++   +  G+++ + +     +  
Sbjct: 417 YVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSN 476

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
            +     +VD++ +   ++EAL++ + MP   N V W +L++A   +G+   A  + +Q+
Sbjct: 477 VFSG-SALVDMYAKCGSIKEALQMFQEMP-VRNSVSWNALISAYAQNGDGGHALRSFEQM 534

Query: 546 LQ--LDPDHDGALVLL 559
           +   L P+    L +L
Sbjct: 535 IHSGLQPNSVSFLSIL 550



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 153/304 (50%), Gaps = 13/304 (4%)

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
           N  +  HLQ          G +  A+ LFD++  KN++ +  M+ GY ++G +  AR +F
Sbjct: 46  NFQVQTHLQR---------GDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLF 96

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
           D MV++ ++ W+ +I GYA++N   EA  LF +M   GM PD +T+ +++S       ++
Sbjct: 97  DSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVN 156

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           +  ++H ++ K  +   L V N+++D Y K  SL  A  +F+ M  ++ +++ +++  ++
Sbjct: 157 EVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYS 216

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
             G   +A+  F KM+D    P+  TF  VL A      ++ G+++  S   + N     
Sbjct: 217 KEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVH-SFVVKCNFVWNV 275

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQL 545
                ++D + + + + EA +L   MP    +  +  L+  C  +G +E  L  F   Q 
Sbjct: 276 FVANALLDFYSKHDRIVEARKLFYEMPEVDGIS-YNVLITCCAWNGRVEESLELFRELQF 334

Query: 546 LQLD 549
            + D
Sbjct: 335 TRFD 338



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 149/314 (47%), Gaps = 35/314 (11%)

Query: 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221
           Y   G +  AR +FD M  R +V W+++I GY Q+  F E  NLF +M    + PD + L
Sbjct: 83  YLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITL 142

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ--STLITMYANCGCMDMAKGLFDKV 279
           + +LS  +   +++    VH  ++   V  D+ L   ++L+  Y     + +A  LF  +
Sbjct: 143 ATLLSGFTEFESVNEVAQVHGHVV--KVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHM 200

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
             K+ V   A+++GYS+ G                              NH  +A+ LF 
Sbjct: 201 AEKDNVTFNALLTGYSKEG-----------------------------FNH--DAINLFF 229

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
           +MQ  G +P + T  +V++A   +  ++  Q++H ++ K  F  ++ V NA++D Y+K  
Sbjct: 230 KMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHD 289

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
            +  AR++F  M   + IS+  +I   A +G    +L  F +++    D     F  +L 
Sbjct: 290 RIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLS 349

Query: 460 ACSHAGLVDEGREI 473
             +++  ++ GR+I
Sbjct: 350 IAANSLNLEMGRQI 363


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/652 (35%), Positives = 367/652 (56%), Gaps = 50/652 (7%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           +  I A + + R + A+ ++ +M+ EG+  +  +F   L   A   GL +G  +H     
Sbjct: 100 SSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILA 159

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
                D  +Q  L+ MY  C ++++AR +F+ M  R++  ++ MI  Y Q G   E L L
Sbjct: 160 SKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALEL 219

Query: 206 FEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           F  M K+  +EP+    + IL A    GNL  G  VH            HL S       
Sbjct: 220 FSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHR-----------HLAS------- 261

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
                   +G FD     N+VV  A+V+ Y + G   +AR +FD M  +++I W++MI+ 
Sbjct: 262 --------RG-FDT----NVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAA 308

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           YA++ +PQEAL LF  M V   +P  V+  S ++ACA LG LD+ + IH  + +      
Sbjct: 309 YAQHGNPQEALNLFKRMDV---EPSGVSFSSALNACALLGALDEGREIHHRVVEANLASP 365

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444
            ++  +++ MYA+CGSL+ AR VF RM+ R+  S  +MI AF  HG  + AL  + KM+ 
Sbjct: 366 -QMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQ 424

Query: 445 ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504
           E I  +G+TF+ VL ACSH  LV + R+   S+  ++ + P  EHY CMVD+ GR+  L 
Sbjct: 425 EGIPADGITFVSVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLG 484

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
           +A ELVETMP+  + V W +L++ C+ HG+++  E AA+++ +L P      V LSN+YA
Sbjct: 485 DAEELVETMPYQADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAETLPYVFLSNMYA 544

Query: 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT-------DQIYE 617
             KR+ D   +RK M+ERG+ +  A S IE++NE++ F +  R  +Q        +++  
Sbjct: 545 AAKRFDDARRVRKEMEERGVTRPVAVSYIEIDNELHMFTSGGRDEQQEGHDGRTMERVRS 604

Query: 618 KLNEVISELKPAGYVPDIHSALVDLE----DEEKREVILWHSEKLALCYGLISSK--KDS 671
            L E++  +K AGYVPD     ++ +    +EEK+  + +HSE+LA+ YGLI++K   DS
Sbjct: 605 LLVELLEPMKQAGYVPDTREVYLEQQGVTSEEEKQRSLCFHSERLAIAYGLIAAKDPDDS 664

Query: 672 -CIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             +R+V + RVC  CH+ IKL+S +  + I +RD +RFHH++ G CSC D+W
Sbjct: 665 RPLRVVNSHRVCSGCHSAIKLLSDITEKRIFVRDGSRFHHFEKGACSCGDHW 716



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 206/437 (47%), Gaps = 77/437 (17%)

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           MI    + G   + L L+ EM+   +  D+ +++ +++AC++   L  G  +HE +I   
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D  L++ L+ MYA CG +D AK +F+ + +K+L   +++++ Y+RAG+ E A +++ 
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 309 QM----VEKDLICWSAMISGYAE----------------NNHPQ---------------- 332
           +M    VE +++ ++  + G A                 +  PQ                
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCD 180

Query: 333 ---EALKLFNEMQ--------------------------------VCGMKPDKVTMLSVI 357
              EA K+F  M+                                V  ++P+  T  +++
Sbjct: 181 EMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATIL 240

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
            A   LG L++ +++H ++    F  ++ V NA++ MY KCGS   AR+VF+ M  RNVI
Sbjct: 241 GAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVI 300

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
           SWTSMI A+A HG+ + AL  F +M    ++P+GV+F   L AC+  G +DEGREI   +
Sbjct: 301 SWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRV 357

Query: 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537
                  P+ E    ++ ++ R   L +A  +   M    +     +++AA   HG  + 
Sbjct: 358 VEANLASPQME--TSLLSMYARCGSLDDARRVFNRMK-TRDAFSCNAMIAAFTQHGRKKQ 414

Query: 538 AEFAAKQLLQLDPDHDG 554
           A    +++ Q     DG
Sbjct: 415 ALRIYRKMEQEGIPADG 431


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/680 (33%), Positives = 368/680 (54%), Gaps = 35/680 (5%)

Query: 44  SQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALK 103
           + ++ L   L+T +S     PS    A+ +F  +P P        +  ++ +   + AL 
Sbjct: 50  AASTFLANHLITMYSHCADVPS----AVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALA 105

Query: 104 VFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYG 163
            F  M   GL   +F+     +A A       G Q+H +G +LGF ++ FV + L  MY 
Sbjct: 106 AFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYS 165

Query: 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPDEMVLS 222
             G +++A  +FD+M  +D V W+ MIDGY +NG  +  +  F +M+    V  D+ VL 
Sbjct: 166 KSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLC 225

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
            +LSA     +     A+H  ++ +    +  +++ L  MYA    MD A          
Sbjct: 226 SVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNA---------- 275

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
                               AR++       +++  +++I GY E +  ++AL +F E++
Sbjct: 276 --------------------ARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELR 315

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
             G++P++ T  S+I  CA   +L+Q  ++H  + K +   D  V++ ++DMY KCG + 
Sbjct: 316 RQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLIS 375

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
            + ++F+ +     I+W + IN  A HG  R A+  F++M    I PN +TF+ +L ACS
Sbjct: 376 LSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACS 435

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
           HAGLVDEG + F SM + + I PK EHY C++D++GRA  L EA + +  MP  PN   W
Sbjct: 436 HAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGW 495

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582
            SL+ ACR+ G  EL E AA  +++L+PD+ G  V LS IYA   +W+DV  +RK M++ 
Sbjct: 496 CSLLGACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDN 555

Query: 583 GILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDL 642
            I K    S ++ N + + F + D SH Q ++IYEKL E+   +K  GYVPD      +L
Sbjct: 556 RIKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNL 615

Query: 643 EDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVI 702
           ED  K+ ++ +HSE++A+ + LIS      I + KNLR+C DCH+ +K +SKV  R+I++
Sbjct: 616 EDTAKQRILRYHSERIAVAFALISMPATKPIIVKKNLRICADCHSALKFISKVENRDIIV 675

Query: 703 RDRTRFHHYKDGVCSCKDYW 722
           RD +RFHH+  G CSC DYW
Sbjct: 676 RDNSRFHHFVKGGCSCGDYW 695



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 32/228 (14%)

Query: 221 LSKILSACSRAGNLSYGEAVH-EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
           L+  L +C RAG+L  G  +H   ++    A    L + LITMY++C  +  A  LFD +
Sbjct: 20  LAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAM 79

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
              NLV  T +VSG +                               +N+  ++AL  F+
Sbjct: 80  PRPNLVSWTTLVSGLT-------------------------------QNSMHRDALAAFS 108

Query: 340 EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
            M   G+ P +  + S   A A L       ++H    +  F  +L V + + DMY+K G
Sbjct: 109 SMCRAGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSG 168

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
            L  A  VF++M +++ ++WT+MI+ +A +G+   A+I F  M+ E +
Sbjct: 169 LLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGL 216


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/631 (36%), Positives = 355/631 (56%), Gaps = 37/631 (5%)

Query: 98  PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           P  +L +F KM   G+  + F+F   LKA     GL  G Q+H +  K GF     V   
Sbjct: 54  PLESLLLFSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNS 113

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           ++ MY  CG+I +A  MF+ M  R+++ W+ MI GY   G  ++ L LF++M+      D
Sbjct: 114 IIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLD 173

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           E   +  L ACS  G +  G  +H F+I                                
Sbjct: 174 EFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSV------------------------ 209

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
                N  V+ A++  Y + G++  AR +F  + EK +I W+A+I GYA+  +  E+++L
Sbjct: 210 -----NTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMEL 264

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F +++   ++ D   + S++   A   ++ Q +++H +  K   G D+ V N+I+DMY K
Sbjct: 265 FRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLK 324

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CG +  A  +F  M  RNVISWT MI  +  HG  + A+  F++M+ +S +P+ VT++ V
Sbjct: 325 CGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAV 384

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L  CSH+GLV++G+E F+ + + + I  + EHY CMVDL GRA  L+EA  LV++MP   
Sbjct: 385 LLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEA 444

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
           NV IW +L++ACRVHG++EL +     LL+LD ++    V++SNIYA    W++   +R+
Sbjct: 445 NVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWKECERIRE 504

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPA-GYVPDIH 636
            +K + + KE   S +E++ EV+ F   D +H  T++I+E L E+   +K   GYV  + 
Sbjct: 505 LVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERRMKEELGYVYGVK 564

Query: 637 SALVDLEDEEKREVILWHSEKLAL-----CYGLISSKKDSCIRIVKNLRVCEDCHNFIKL 691
            AL D+E+E K + +  HSEKLA+     C GL   +K   IR+ KNLRVC DCH FIK 
Sbjct: 565 YALHDVEEESKMDNLRVHSEKLAIGLALVCGGLEEGRK--VIRVFKNLRVCGDCHEFIKG 622

Query: 692 VSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +SK+     V+RD  RFH ++DG+CSC+DYW
Sbjct: 623 LSKILRVVFVVRDANRFHRFEDGLCSCRDYW 653



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 119/420 (28%), Positives = 207/420 (49%), Gaps = 41/420 (9%)

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
           +GFG D  +   L+ MYG CG++  A  +FD+M  R++V W+ ++ G+ QNG   E L L
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           F +M +S V+P++   S  L AC     L  G  +H+  +     +   + +++I MY+ 
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
           CG ++ A  +F+ + ++NL+   AM++GY+ AG  E                        
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCE------------------------ 156

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF--GG 383
                  +AL LF +MQ  G   D+ T  S + AC+ LG + +  +IH ++    F    
Sbjct: 157 -------KALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSV 209

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
           +  V  A+ID+Y KCG L  AR VF  +  ++VISWT++I  +A  G+   ++  F +++
Sbjct: 210 NTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLR 269

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC--MVDLFGRAN 501
           + SI  +G     ++   +   LV +G+++ A       +P   +   C  ++D++ +  
Sbjct: 270 ESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAI---KVPSGVDISVCNSILDMYLKCG 326

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRVH--GEIELAEFAAKQLLQLDPDHDGALVLL 559
           ++ EA  L   MP A NV+ W  ++     H  G+  +  F   QL   +PD    L +L
Sbjct: 327 MINEAERLFSEMP-ARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVL 385


>gi|302785251|ref|XP_002974397.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
 gi|300157995|gb|EFJ24619.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
          Length = 679

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/640 (33%), Positives = 361/640 (56%), Gaps = 40/640 (6%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           ++++ AR   L EG ++H L  ++G GSD +V   LV MYG CG + +ARL+F+    ++
Sbjct: 40  VIQSCARLGALAEGRRIHQLMRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN-LSYGEAVH 241
           +  W+++I    Q+G   E L LF EM    ++P  +  +  ++ACS     L  G A+H
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALH 159

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN------------------ 283
             +            ++L++MY+ CG ++ +   F+ +   N                  
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEESMRTFESMTEPNAVSWNAMIAAFAEHRRGL 219

Query: 284 -------------------LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
                              +VV T +V+ Y++   + DA   F ++ E ++I W+ +IS 
Sbjct: 220 EALRTLQKMFLEGIRACSDVVVGTTLVNMYAKCSGLHDANAAFVKLQEPNIITWNVLISA 279

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           Y ++   +EA++LF  M + G++ D+VT ++++ AC     L+  + IH  + ++    +
Sbjct: 280 YVQHCCFKEAMELFRRMLLLGLEMDEVTFINILGACCVPVALEDGRAIHACVREHPLASN 339

Query: 385 -LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
              + N I++MY KCGSL+ A  +F+ M + +VI+W +MI A+  HG    AL F+  M+
Sbjct: 340 HAPLENVILNMYGKCGSLQDAEAMFKSMSQPDVIAWNTMIAAYGQHGHTSEALRFYELMQ 399

Query: 444 DESIDPNGVTFIGVLYA-CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502
           +E + P+  T++ V+ A C++AGL +E    F SM  ++ + P   HYGCMV+  G+A  
Sbjct: 400 EEGVVPDDYTYVSVIDASCANAGLPEEAHAYFVSMQQDHGVRPGGGHYGCMVESLGKAGR 459

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
           L +A  L++ MPF P+V+ W S +A CR HG+++  + AAK  +++DP+     V L+ I
Sbjct: 460 LSDAETLIQCMPFEPDVLTWTSFLANCRSHGDMKRGKLAAKGAIRIDPEASTGYVALARI 519

Query: 563 YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
           +A    +Q+   +RK M +RGI K    S I++   VYEF   D+S+ ++ +I+++L  +
Sbjct: 520 HADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRSKEIFDELKRL 579

Query: 623 ISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVC 682
             E+K AGY PD+     D+E  +K  ++  HSE+LA+ +G+IS+   + +RI+KNLRVC
Sbjct: 580 DKEMKSAGYDPDMAHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSPGTPLRIMKNLRVC 639

Query: 683 EDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            DCH   KL SK+  REI++RD  RFHH+K+G CSCKD+W
Sbjct: 640 GDCHTMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 679



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 163/374 (43%), Gaps = 50/374 (13%)

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
           +++ +C+R G L+ G  +H+ +    +  D ++ + L+ MY  CG ++            
Sbjct: 39  RVIQSCARLGALAEGRRIHQLMRRVGLGSDVYVSNHLVMMYGKCGSLE------------ 86

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
                              +ARL+F+    K++  W+ +I+  A++   QEAL LF EM 
Sbjct: 87  -------------------EARLVFEATPAKNVFSWTILITVCAQHGRSQEALALFYEML 127

Query: 343 VCGMKPDKVTMLSVISAC-AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
             G++P  V+  + I+AC A    L   + +H  + +  F   +    +++ MY+KCGSL
Sbjct: 128 KQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSKCGSL 187

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-----GVTFIG 456
           E +   FE M   N +SW +MI AFA H     AL    KM  E I        G T + 
Sbjct: 188 EESMRTFESMTEPNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSDVVVGTTLVN 247

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--- 513
           +   CS  GL D     F  +       P    +  ++  + +    +EA+EL   M   
Sbjct: 248 MYAKCS--GLHD-ANAAFVKLQE-----PNIITWNVLISAYVQHCCFKEAMELFRRMLLL 299

Query: 514 PFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
               + V + +++ AC V   +E   A  A  +   L  +H     ++ N+Y K    QD
Sbjct: 300 GLEMDEVTFINILGACCVPVALEDGRAIHACVREHPLASNHAPLENVILNMYGKCGSLQD 359

Query: 572 VGELRKSMKERGIL 585
              + KSM +  ++
Sbjct: 360 AEAMFKSMSQPDVI 373



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 156/362 (43%), Gaps = 49/362 (13%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
           S L+ A + F ++  P     N  I A       K A+++F +ML  GL +D  +F  IL
Sbjct: 253 SGLHDANAAFVKLQEPNIITWNVLISAYVQHCCFKEAMELFRRMLLLGLEMDEVTFINIL 312

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSD-PFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
            A      L +G  +H    +    S+   ++  ++ MYG CG + DA  MF  MS  D+
Sbjct: 313 GACCVPVALEDGRAIHACVREHPLASNHAPLENVILNMYGKCGSLQDAEAMFKSMSQPDV 372

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV-LSKILSACSRAGNLSYGEAVHE 242
           + W+ MI  Y Q+G   E L  +E M+   V PD+   +S I ++C+ AG     E  H 
Sbjct: 373 IAWNTMIAAYGQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDASCANAG---LPEEAHA 429

Query: 243 FII----DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
           + +    D+ V               + GC                     MV    +AG
Sbjct: 430 YFVSMQQDHGVRPGG----------GHYGC---------------------MVESLGKAG 458

Query: 299 QVEDARLIFDQM-VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT-MLSV 356
           ++ DA  +   M  E D++ W++ ++    +   +   KL  +  +  + P+  T  +++
Sbjct: 459 RLSDAETLIQCMPFEPDVLTWTSFLANCRSHGDMKRG-KLAAKGAI-RIDPEASTGYVAL 516

Query: 357 ISACAHLGVLDQAQRIH-LYID----KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
               A  G   +A RI  L +D    KNA    +++  ++ +  A   S   ++E+F+ +
Sbjct: 517 ARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRSKEIFDEL 576

Query: 412 RR 413
           +R
Sbjct: 577 KR 578


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/656 (36%), Positives = 369/656 (56%), Gaps = 40/656 (6%)

Query: 86  NKFIRAISWSHRPKHALKVFLKM-LNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
           N  +   S    P  A+ +F +M +  G+  D      IL         L G QVHG   
Sbjct: 199 NSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCV 258

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           + G   D FV   LV MY  CGK+ DA  +F++M ++D+V W+ M+ GY QNG F++ L+
Sbjct: 259 RSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALS 318

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           LF +M+   +E D +  S ++S  ++ G       V   +       +     +L++  A
Sbjct: 319 LFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACA 378

Query: 265 NCGCMDMAKGLF---DKVLLK--------NLVVSTAMVSGYSRAGQVEDARLIFDQMV-- 311
           + G +   K       K +LK        +L V  A++  Y++   +E AR +FD++   
Sbjct: 379 SVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPK 438

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEM---QVCGMKPDKVTMLSVISACAHLGVLDQ 368
           ++D++ W+ MI GYA++     AL+LF+EM     C + P+  T+  V+ ACA L  L  
Sbjct: 439 DRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNC-IVPNDFTISCVLMACARLAALKF 497

Query: 369 AQRIHLYI-DKNAFGGD-LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
            ++IH Y+  ++    D L V N +IDMY+K G +++A+ VF+ M +RN +SWTS++  +
Sbjct: 498 GKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGY 557

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
            +HG + +A   F++M+ E++  +G+TF+ VLYACSH+G+             ++ + P 
Sbjct: 558 GMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM-------------DFGVDPG 604

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            EHY CMVDL GRA  L EA+ L+  MP  P  V+W +L++ACR+H   ELAEFAAK+LL
Sbjct: 605 VEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAEFAAKKLL 664

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           +L  D+DG   LLSNIYA  +RW+DV  +   MK  GI K    S ++    +  F   D
Sbjct: 665 ELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGRKGMETFYVGD 724

Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS 666
           R+H Q+ +IYE L ++I  +K        + +L D++DEEK + +  HSEKLAL Y +++
Sbjct: 725 RTHLQSQKIYETLADLIKRIKA-------NFSLHDVDDEEKGDQLSEHSEKLALAYAILT 777

Query: 667 SKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
               + IRI KNLR+C D H+ I  +S +   EI++RD +RFH +K+G CSCK YW
Sbjct: 778 LPPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCKGYW 833



 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 193/596 (32%), Positives = 301/596 (50%), Gaps = 43/596 (7%)

Query: 8   TKPLTLPTSTAIS--SCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           T  L L  S+ IS   C +LT  K  H Q +   H  +S  ++   L+ T  S  + T +
Sbjct: 18  THNLLLYHSSTISKQQCKTLTQAKLLHQQYIINGHLLNSYTNVT-NLIYTYISSNSITNA 76

Query: 66  SLYYALSIFSQIPAPPSRVS----NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
            L    ++       PS  S    N+ IR     + P  AL++F +M     T D ++FP
Sbjct: 77  ILLLEKNV------TPSHSSVYWWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFP 130

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
            + KA         G  +HG   +LGF S+ FV   ++ MYG C  ++ AR +FD++ YR
Sbjct: 131 FVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYR 190

Query: 182 ---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACSRAGNLSYG 237
              D V W+ ++  Y    + +  ++LF EM +   + PD + +  IL  C   G    G
Sbjct: 191 GICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCG 250

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
             VH F + + +  D  + + L+ MYA CG M+ A  +F+++  K++V   AMV+GYS+ 
Sbjct: 251 RQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQN 310

Query: 298 GQVEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           G+ EDA  +F +M    +E D++ WS++ISGYA+     EA+ +F +M  C  +P+ VT+
Sbjct: 311 GRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTL 370

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGG-------DLRVNNAIIDMYAKCGSLESARE 406
           +S++SACA +G L   +  H Y  K    G       DL V NA+IDMYAKC SLE AR 
Sbjct: 371 MSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARA 430

Query: 407 VFERM--RRRNVISWTSMINAFAIHGDARNALIFFNKM--KDESIDPNGVTFIGVLYACS 462
           +F+ +  + R+V++WT MI  +A HGDA +AL  F++M   D  I PN  T   VL AC+
Sbjct: 431 MFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACA 490

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYG-CMVDLFGRANLLREALELVETMPFAPNVVI 521
               +  G++I A +     I         C++D++ ++  +  A  + ++M    N V 
Sbjct: 491 RLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS-KRNAVS 549

Query: 522 WGSLMAACRVHGEIELA----EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573
           W SL+    +HG  E A    +   K+ L LD      +  L  +YA      D G
Sbjct: 550 WTSLLTGYGMHGRSEDAFRVFDEMRKEALVLD-----GITFLVVLYACSHSGMDFG 600


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/629 (34%), Positives = 354/629 (56%), Gaps = 34/629 (5%)

Query: 96  HRPKHALKVF--LKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPF 153
           +R + A+++F  L++ ++G  +   ++  ++ A      +    +V       GF  D +
Sbjct: 94  NRYREAMELFEILELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLY 153

Query: 154 VQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN 213
           V   ++ ++  CG +LDAR +FD+M  +D+  W  MI G+  +G F E   LF  M    
Sbjct: 154 VMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEF 213

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
            +      + ++ A +  G +  G  +H   +   V  D          + +C  +DM  
Sbjct: 214 NDGRSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDT---------FVSCALIDM-- 262

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
                               YS+ G +EDA  +FDQM EK  + W+++I+ YA + + +E
Sbjct: 263 --------------------YSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEE 302

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
           AL  + EM+  G K D  T+  VI  CA L  L+ A++ H  + +  +  D+  N A++D
Sbjct: 303 ALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVD 362

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
            Y+K G +E A  VF RMRR+NVISW ++I  +  HG    A+  F +M  E + PN VT
Sbjct: 363 FYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVT 422

Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
           F+ VL ACS++GL + G EIF SM+ ++ + P+  HY CMV+L GR  LL EA EL+ + 
Sbjct: 423 FLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSA 482

Query: 514 PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573
           PF P   +W +L+ ACR+H  +EL + AA+ L  ++P+     ++L N+Y    + ++  
Sbjct: 483 PFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAA 542

Query: 574 ELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVP 633
            + +++K +G+    AC+ IE+  + Y FL  D+SH QT +IYEK+N ++ E+   GYV 
Sbjct: 543 GVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEISRHGYVE 602

Query: 634 DIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVS 693
           +  + L D+++EE+R ++ +HSEKLA+ +GLI++   + ++I +  RVC DCH+ IK ++
Sbjct: 603 ENKALLPDVDEEEQR-ILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKFIA 661

Query: 694 KVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            V  REIV+RD +RFHH++DG CSC DYW
Sbjct: 662 MVTGREIVVRDASRFHHFRDGSCSCGDYW 690



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 166/363 (45%), Gaps = 35/363 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P          I     S     A  +FL M  E       +F  +++A A 
Sbjct: 171 ARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASA- 229

Query: 130 AEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
             GL++ G Q+H    K G G D FV   L+ MY  CG I DA  +FD+M  +  V W+ 
Sbjct: 230 GLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNS 289

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I  Y  +G  +E L+ + EM+ S  + D   +S ++  C+R  +L Y +  H  ++   
Sbjct: 290 IIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRG 349

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D    + L+  Y+  G M+ A  +F+++  KN++   A+++GY   GQ E+A  +F+
Sbjct: 350 YDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFE 409

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           QM+ +                               GM P+ VT L+V+SAC++ G+ ++
Sbjct: 410 QMLRE-------------------------------GMIPNHVTFLAVLSACSYSGLSER 438

Query: 369 AQRIHLYIDKNAFGGDLRVNNA-IIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINAF 426
              I   + ++       ++ A ++++  + G L+ A E+      +   + W +++ A 
Sbjct: 439 GWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPTTNMWATLLTAC 498

Query: 427 AIH 429
            +H
Sbjct: 499 RMH 501


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/727 (32%), Positives = 387/727 (53%), Gaps = 74/727 (10%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F + P     + N  + A   S R + AL++  +M +        +   +L+A  +
Sbjct: 185 ANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGK 244

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L EG Q+HG   + G  S+  +   +V MY    ++  AR +FD     ++  W+ +
Sbjct: 245 LRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSI 304

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPD-----------------EMVLSKILS------ 226
           I  Y  NG  +   +LF EM+ S+++PD                 E VL+ I S      
Sbjct: 305 ISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGF 364

Query: 227 ---ACS---------RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA-- 272
              +CS           G  + G+ +H +I+ + +  D ++ ++L+ MY    C++ A  
Sbjct: 365 KPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEV 424

Query: 273 ----------------------KGLFD---KVLLK--------NLVVSTAMVSGYSRAGQ 299
                                 KGLFD   K+L++        +LV   ++VSGYS +G 
Sbjct: 425 VFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGC 484

Query: 300 VEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
            E+A  + +++    +  +++ W+AMISG  +N +  +AL+ F++MQ   +KP+  T+ +
Sbjct: 485 SEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTIST 544

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           ++ ACA   +L + + IH +  K+ F  D+ +  A+IDMY+K G L+ A EVF  ++ + 
Sbjct: 545 LLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKT 604

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           +  W  M+  +AI+G        F+ M    I P+ +TF  +L  C ++GLV +G + F 
Sbjct: 605 LPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGWKYFD 664

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           SM  +Y+I P  EHY CMVDL G+A  L EAL+ +  MP   +  IWG+++AACR+H +I
Sbjct: 665 SMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGAVLAACRLHKDI 724

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           ++AE AA+ L +L+P +    VL+ NIY+  +RW DV  L++SM   G+      S I++
Sbjct: 725 KIAEIAARNLFRLEPYNSANYVLMMNIYSTFERWGDVERLKESMTAMGVKIPNVWSWIQV 784

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
              ++ F T  +SH +  +IY  L ++ISE+K  GYVPD +    +++D EK +V+L H+
Sbjct: 785 RQTIHVFSTEGKSHPEEGEIYFDLYQLISEIKKLGYVPDTNCVHQNIDDSEKEKVLLSHT 844

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ YGL+  K  + IR+VKN R+C+DCH   K +S    REI +RD  RFHH+ +G 
Sbjct: 845 EKLAMTYGLMKIKGGTPIRVVKNTRICQDCHTAAKYISLARNREIFLRDGGRFHHFMNGE 904

Query: 716 CSCKDYW 722
           CSC D W
Sbjct: 905 CSCNDRW 911



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 115/494 (23%), Positives = 234/494 (47%), Gaps = 15/494 (3%)

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM 161
           L+VF ++ ++G+  D  +   +LK       L  GM+VH    K GF  D  +   L+ +
Sbjct: 116 LEVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINL 175

Query: 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221
           Y  C  I  A  +FD+   ++   W+ ++    ++  +++ L L   M+ ++ +  +  +
Sbjct: 176 YEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTI 235

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
            K+L AC +   L+ G+ +H ++I      +  + +++++MY+    +++A+ +FD    
Sbjct: 236 VKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTED 295

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKL 337
            NL    +++S Y+  G +  A  +F +M    ++ D+I W++++SG+      +  L  
Sbjct: 296 HNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTN 355

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
              +Q  G KPD  ++ S + A   LG  +  + IH YI ++    D+ V  +++DMY K
Sbjct: 356 IRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIK 415

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
              LE A  VF   + +N+ +W S+I+ +   G   NA     +MK+E I  + VT+  +
Sbjct: 416 NDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSL 475

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP--- 514
           +   S +G  +E   +   + +   + P    +  M+    +     +AL+    M    
Sbjct: 476 VSGYSMSGCSEEALAVINRIKS-LGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEEN 534

Query: 515 FAPNVVIWGSLMAACRVHGEIELAE----FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570
             PN     +L+ AC     ++  E    F+ K     D     AL+   ++Y+K  + +
Sbjct: 535 VKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALI---DMYSKGGKLK 591

Query: 571 DVGELRKSMKERGI 584
              E+ +++KE+ +
Sbjct: 592 VAHEVFRNIKEKTL 605



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 174/409 (42%), Gaps = 76/409 (18%)

Query: 181 RDIVPWSVMIDGYFQ-NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
           R+ + W+  ++ +    G   E+L +F+E+    V+ D   L+ +L  C     L  G  
Sbjct: 93  RNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGVKFDSKALTVVLKICLALMELWLGME 152

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           VH  ++     +D HL   LI +Y  C  +D A  +FD+  L                  
Sbjct: 153 VHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPL------------------ 194

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
                       ++D + W+ ++     +   ++AL+L   MQ    K    T++ ++ A
Sbjct: 195 ------------QEDFL-WNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQA 241

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           C  L  L++ ++IH Y+ +     +  + N+I+ MY++   LE AR VF+     N+ SW
Sbjct: 242 CGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASW 301

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY-------------------- 459
            S+I+++A++G    A   F +M+  SI P+ +T+  +L                     
Sbjct: 302 NSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQS 361

Query: 460 ------ACS---------HAGLVDEGREIFASMTNEYNIPPKYEHYGC--MVDLFGRANL 502
                 +CS           G  + G+EI   +        +Y+ Y C  +VD++ + + 
Sbjct: 362 AGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRS---KLEYDVYVCTSLVDMYIKNDC 418

Query: 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           L +A E+V       N+  W SL++     G  + AE   K L+Q+  +
Sbjct: 419 LEKA-EVVFHHTKNKNICAWNSLISGYTYKGLFDNAE---KLLIQMKEE 463



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 113/253 (44%), Gaps = 4/253 (1%)

Query: 283 NLV-VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE-NNHPQEALKLFNE 340
           NLV +  +M+  Y   G  E A  +F     ++ + W++ +  +A       E L++F E
Sbjct: 62  NLVTMDGSMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKE 121

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           +   G+K D   +  V+  C  L  L     +H  + K  F  D+ ++ A+I++Y KC  
Sbjct: 122 LHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLG 181

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           ++ A +VF+    +    W +++ A        +AL    +M+  S      T + +L A
Sbjct: 182 IDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQA 241

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           C     ++EG++I   +   +           +V ++ R N L  A  + ++     N+ 
Sbjct: 242 CGKLRALNEGKQIHGYVI-RFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTE-DHNLA 299

Query: 521 IWGSLMAACRVHG 533
            W S++++  V+G
Sbjct: 300 SWNSIISSYAVNG 312


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/679 (33%), Positives = 363/679 (53%), Gaps = 47/679 (6%)

Query: 60  PTTTPSSLYYALSIFSQIPAP------------PSRVS-NKFIRAISWSHRPKHALKVFL 106
           P  +P    + ++++S++  P            P+ VS   FI   +   RP  AL  F 
Sbjct: 47  PALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGAAQHGRPLPALSAFA 106

Query: 107 KMLNEGLTIDRFSFPPILKAIARAEGLLE-GMQVHGLGTKLGF-GSDPFVQTGLVGMYGA 164
            ML  GL  + F+FP   KA A A      G Q+H L  + G+   DPFV    + MY  
Sbjct: 107 GMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFK 166

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
            G++  AR +F +M  R++V W+ ++     +G   E +  +  ++ +   P+ +     
Sbjct: 167 TGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAF 226

Query: 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284
            +AC+ A  LS GE  H F++     +D  + ++++  Y  C C                
Sbjct: 227 FNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRC---------------- 270

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC 344
                       AG+   AR +FD M  ++ + W +M++ YA+N   +EA   +   +  
Sbjct: 271 ------------AGK---ARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRS 315

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
           G +P    + S ++ CA L  L   + +H    ++    ++ V +A++DMY KCG +E A
Sbjct: 316 GEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDA 375

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSH 463
            ++F    +RN+++W +MI  +A  GDA+NAL+ F+ M +     PN +T + V+ +CS 
Sbjct: 376 EQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSR 435

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
            GL  +G E+F +M   + I P+ EHY C+VDL GRA +  +A E+++ MP  P++ +WG
Sbjct: 436 GGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWG 495

Query: 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
           +L+ AC++HG+ EL   AA++L +LDP   G  VLLSN++A   RW +  ++RK MK  G
Sbjct: 496 ALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVG 555

Query: 584 ILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLE 643
           I K+  CS +   N V+ F   D  H+  ++I   L+++  +++ AGY+PD   +L DLE
Sbjct: 556 IKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLE 615

Query: 644 DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIR 703
           +EEK   +  HSEKLAL +GLI       IRI+KNLR+C DCH   K +S +  REI++R
Sbjct: 616 EEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIVR 675

Query: 704 DRTRFHHYKDGVCSCKDYW 722
           D  RFHH+K   CSC DYW
Sbjct: 676 DNNRFHHFKQYQCSCGDYW 694


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/563 (38%), Positives = 337/563 (59%), Gaps = 5/563 (0%)

Query: 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN--GLFDEVLNLFEEMKMSNVEPDEMVL 221
           A   +  A  +FD++   D+  ++ MI  +  +     D +      ++ S   P+    
Sbjct: 222 ALASLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSF 281

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
                AC     +  GE V    +   +  +  + + LI M+   G ++ A+ +FD  + 
Sbjct: 282 VFAFGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVD 341

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
           ++      M+  Y  +G +  A+ +FD+M E+D++ WS +I+GY +     EAL  F++M
Sbjct: 342 RDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKM 401

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
               +KP++ TM+S ++AC++L  LDQ + IH+YI ++    + R+  ++IDMYAKCG +
Sbjct: 402 LQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEI 461

Query: 402 ESAREVF-ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +SA  VF E   +R V  W +MI  FA+HG    A+  F KMK E + PN VTFI +L A
Sbjct: 462 DSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNA 521

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSH  +V EG+  F  M ++Y I P+ EHYGCMVDL  R+  L+++ E++ +MP AP+V 
Sbjct: 522 CSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVA 581

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
           IWG+L+ ACR++ ++E      + + ++DP+H G  VLL NIY+   RW +   +R+  +
Sbjct: 582 IWGALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNEARMVREKNE 641

Query: 581 ERGILKE-RACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
                K+    S IE+N   +EFL  DRSH Q+ +IY  L+E+IS+LK AGYVP++   L
Sbjct: 642 INSDRKKIPGFSSIELNGVFHEFLVGDRSHPQSREIYSFLDEMISKLKIAGYVPELGEVL 701

Query: 640 VDLEDEEKREVIL-WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           +D +DEE +E  L  HSEKLA+ +GL+++   + IRIVKNLRVC DCH   K +SKVY R
Sbjct: 702 LDFDDEEDKETALSVHSEKLAIAFGLMNTAPGTPIRIVKNLRVCGDCHQATKFISKVYDR 761

Query: 699 EIVIRDRTRFHHYKDGVCSCKDY 721
            I++RDR R+HH+KDG+CSCKDY
Sbjct: 762 VIIVRDRMRYHHFKDGICSCKDY 784



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 139/514 (27%), Positives = 238/514 (46%), Gaps = 90/514 (17%)

Query: 8   TKPLTLPTSTAISS----CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTT 63
           TKP      + +SS    C S+  +KQTHA ++  +        + L ++   F L    
Sbjct: 171 TKPFHYVNHSKLSSLIDLCKSINQIKQTHANLITTAQ-------ITLPVIANKF-LKNVA 222

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWS-HRPKHALKVFLKMLNE-GLTIDRFSFP 121
            +SL YA  +F QIP P   + N  I++ S S H    ++ VF  ++ + G   +R+SF 
Sbjct: 223 LASLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFV 282

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR--------- 172
               A      + EG QV     K+G   + FV   L+GM+G  G++ DAR         
Sbjct: 283 FAFGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDR 342

Query: 173 ----------------------LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
                                  +FD+M  RD+V WS +I GY Q G F E L+ F +M 
Sbjct: 343 DFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKML 402

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
            S V+P+E  +   L+ACS    L  G+ +H +I  +N+ ++  L ++LI MYA CG +D
Sbjct: 403 QSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEID 462

Query: 271 MAKGLFDKVLLKNLVVS-TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
            A  +F +  +K  V    AM+ G++  G+                              
Sbjct: 463 SASSVFHEHKVKRKVWPWNAMIGGFAMHGK------------------------------ 492

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389
            P+EA+ +F +M+V  + P+KVT +++++AC+H G + +  + +  +  + +G +  + +
Sbjct: 493 -PEEAINVFEKMKVEKVSPNKVTFIALLNACSH-GYMVKEGKSYFELMASDYGINPEIEH 550

Query: 390 --AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
              ++D+ ++ G L+ + E+   M    +V  W +++NA  I+ D          +K+  
Sbjct: 551 YGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKE-- 608

Query: 447 IDPNGV---TFIGVLYACS----HAGLVDEGREI 473
           IDPN +     +G +Y+ S     A +V E  EI
Sbjct: 609 IDPNHIGCNVLLGNIYSTSGRWNEARMVREKNEI 642


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/614 (35%), Positives = 347/614 (56%), Gaps = 42/614 (6%)

Query: 22  CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPP 81
           C +  H+KQT + ++    +HH+     L  +L S          L Y L +F ++  P 
Sbjct: 18  CGTFDHLKQTTSILITSGLAHHT---FFLSDILRS------ATKDLGYTLLLFDRLATPY 68

Query: 82  SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG 141
             + N  IR  S S +P+  L  + ++ N G+  DR +FP +LKA ++        Q + 
Sbjct: 69  IFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNE-NPFQFYA 127

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201
              K G   D FVQ  LV  +  CG +  +R +F + + +D+V W+ +I+G  +NG   E
Sbjct: 128 HIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVE 187

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN-VALDAHLQSTLI 260
            L  F EM+ S VE DE+ +  +L A +   ++ +G  VH F +++  V  D ++ S L+
Sbjct: 188 ALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALV 247

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
            MY                               S+ G  +DA  +F++M  ++L+ W A
Sbjct: 248 DMY-------------------------------SKCGYCDDAVKVFNEMPTRNLVSWGA 276

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           +I+GY + N  +EALK+F EM + G++P++ T+ S ++ACA LG LDQ + +H Y+D++ 
Sbjct: 277 LIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSK 336

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
            G + ++  A++DMY+KCG ++ A  VFE++  ++V  WT+MIN  A+ GDA ++L  F+
Sbjct: 337 LGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFS 396

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500
           +M    + PNGVTF+GVL AC+H GLVDEG E+F  M  +Y + P  +HYGCMVDL GRA
Sbjct: 397 QMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRA 456

Query: 501 NLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560
             L EA++ +E+MP  P   +WG+L + C +H   EL E     L++L P H G  +LL+
Sbjct: 457 GRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLA 516

Query: 561 NIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLN 620
           N+Y++ ++W+    +R+ MK +G+ K   CS IE+N  ++EF+  D+SH ++  +Y  L 
Sbjct: 517 NLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWIEVNGVIHEFIAFDKSHTESINVYMMLE 576

Query: 621 EVISELKPAGYVPD 634
            V ++LK A Y  D
Sbjct: 577 SVSAQLKLATYALD 590


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/657 (35%), Positives = 360/657 (54%), Gaps = 36/657 (5%)

Query: 70   ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
            A S+F  +P+  +   N  I  +  + R + A+  F  M   G+    FS    L + + 
Sbjct: 510  ACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSS 569

Query: 130  AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
               L  G Q+HG G K G   D  V   L+ +Y     I + + +F +M   D V W+  
Sbjct: 570  LGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSF 629

Query: 190  IDGYFQ-NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
            I    +      + L  F EM  +   P+ +    IL+A S    L  G  +H  I+  +
Sbjct: 630  IGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYS 689

Query: 249  VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
            VA D  +++ L+  Y  C                                Q+ED  +IF 
Sbjct: 690  VADDNAIENALLAFYGKCE-------------------------------QMEDCEIIFS 718

Query: 309  QMVEK-DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
            +M E+ D + W++MISGY  +    +A+ L   M   G K D  T  +V+SACA +  L+
Sbjct: 719  RMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLE 778

Query: 368  QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
            +   +H    +     D+ V +A++DMYAKCG ++ A   FE M  RN+ SW SMI+ +A
Sbjct: 779  RGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYA 838

Query: 428  IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
             HG  + AL  F +MK     P+ VTF+GVL ACSH GLVDEG + F SM   Y + P+ 
Sbjct: 839  RHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRI 898

Query: 488  EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA-CRVHGE-IELAEFAAKQL 545
            EH+ CMVDL GRA  +++  + ++TMP  PN++IW +++ A CR +G   EL + AAK L
Sbjct: 899  EHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKML 958

Query: 546  LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
            ++L+P +    VLLSN++A    W+DV E R +M++  + K+  CS + M + V+ F+  
Sbjct: 959  IELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAG 1018

Query: 606  DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
            D++H + ++IYEKL E++++++ AGYVP+   AL DLE E K E++ +HSEKLA+ + ++
Sbjct: 1019 DQTHPEKEKIYEKLKELMNKIRDAGYVPETKYALYDLELENKEELLSYHSEKLAIAF-VL 1077

Query: 666  SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            + K +  IRI+KNLRVC DCH   K +SK+  R+I++RD  RFHH+  G+CSC DYW
Sbjct: 1078 TRKSELPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFHHFGGGMCSCGDYW 1134



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 196/434 (45%), Gaps = 48/434 (11%)

Query: 10  PLTLPTSTAISSCSSL---THMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P      + +SSCSSL   T  +Q H +  K         S     LLT ++       S
Sbjct: 555 PSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVS---NALLTLYA----ETDS 607

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAIS-WSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           +     +F Q+P       N FI A++ +      ALK FL+M+  G   +R +F  IL 
Sbjct: 608 INECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILA 667

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS-YRDIV 184
           A++    L  G Q+H L  K     D  ++  L+  YG C ++ D  ++F +MS  RD V
Sbjct: 668 AVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEV 727

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ MI GY  +G+  + ++L   M     + D    + +LSAC+    L  G  VH   
Sbjct: 728 SWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACA 787

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           +   +  D  + S L+ MYA CG +D A   F+ + ++N+    +M+SGY+R G      
Sbjct: 788 VRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHG------ 841

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                                    H Q+ALK+F  M+  G  PD VT + V+SAC+H+G
Sbjct: 842 -------------------------HGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVG 876

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVN--NAIIDMYAKCGSLESAREVFERM-RRRNVISWTS 421
           ++D+  + H       +G   R+   + ++D+  + G ++   +  + M    N++ W +
Sbjct: 877 LVDEGYK-HFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRT 935

Query: 422 MINAFAIHGDARNA 435
           ++ A     + RN 
Sbjct: 936 VLGA-CCRANGRNT 948



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 190/397 (47%), Gaps = 46/397 (11%)

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           K GF  D F    L+ +Y   G ++ AR +FD+M  +++V WS +I GY QN + DE  +
Sbjct: 168 KTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACS 227

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGN--LSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           LF+ +  S + P+   +   L AC + G+  +  G  +H FI       D  L + L++M
Sbjct: 228 LFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSM 287

Query: 263 YANC-GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
           Y++C G +D A  +FD++  +N V   +++S Y R G                       
Sbjct: 288 YSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGD---------------------- 325

Query: 322 ISGYAENNHPQEALKLFNEMQVCG----MKPDKVTMLSVISACAHLG--VLDQAQRIHLY 375
                       A KLF+ MQ+ G    ++P++ T+ S+++A   L    L   +++   
Sbjct: 326 ---------AVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTR 376

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
           I+K+ F  DL V +A+++ +A+ G ++ A+ +F++M  RN ++   ++   A       A
Sbjct: 377 IEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEA 436

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR----EIFASMTNEYNIPPKYEHYG 491
              F +MKD  ++ N  + + +L   +    + EG+    E+ A +     +  +     
Sbjct: 437 AKVFKEMKD-LVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGN 495

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
            +V+++G+   +  A  + + MP + + V W S+++ 
Sbjct: 496 ALVNMYGKCTAIDNACSVFQLMP-SKDTVSWNSMISG 531



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 133/542 (24%), Positives = 236/542 (43%), Gaps = 54/542 (9%)

Query: 3   TLSQPTKPLTLPTSTAISSCSSL--THMK---QTHAQILKLSHSHHSQNSLLLKLLLTSF 57
            +S    P      +A+ +C     T +K   Q HA I KL       + +L  +L++ +
Sbjct: 232 VISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCV---SDMILSNVLMSMY 288

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117
           S       S+  A  +F +I    S   N  I           A K+F  M  EG+ ++ 
Sbjct: 289 S---DCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNL 345

Query: 118 FSFPPILKAIARAE------GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA 171
                 L ++  A       GL+   Q+     K GF  D +V + LV  +   G +  A
Sbjct: 346 RPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCA 405

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
           +++F +M  R+ V  + ++ G  +    +E   +F+EMK   VE +   L  +LS  +  
Sbjct: 406 KMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMK-DLVEINSESLVVLLSTFTEF 464

Query: 232 GNLS----YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
            NL      G+ VH ++  +                          GL D      + + 
Sbjct: 465 SNLKEGKRKGQEVHAYLFRS--------------------------GLVDA----RISIG 494

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
            A+V+ Y +   +++A  +F  M  KD + W++MISG   N   +EA+  F+ M+  GM 
Sbjct: 495 NALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMV 554

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           P   +++S +S+C+ LG L   ++IH    K     D+ V+NA++ +YA+  S+   ++V
Sbjct: 555 PSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKV 614

Query: 408 FERMRRRNVISWTSMINAFAIH-GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL 466
           F +M   + +SW S I A A +      AL +F +M      PN VTFI +L A S   +
Sbjct: 615 FFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSV 674

Query: 467 VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLM 526
           +  G +I A +  +Y++         ++  +G+   + +   +   M    + V W S++
Sbjct: 675 LGLGHQIHA-LILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMI 733

Query: 527 AA 528
           + 
Sbjct: 734 SG 735



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 102/233 (43%), Gaps = 8/233 (3%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +P +   +    A+SS S L    Q HA ILK  +S    N++   LL            
Sbjct: 656 RPNRVTFINILAAVSSFSVLGLGHQIHALILK--YSVADDNAIENALLAFYGKCEQMEDC 713

Query: 66  SLYYALSIFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
            +     IFS++      VS N  I     S     A+ +   M+  G  +D F+F  +L
Sbjct: 714 EI-----IFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVL 768

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            A A    L  GM+VH    +    SD  V + LV MY  CGKI  A   F+ M  R+I 
Sbjct: 769 SACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIY 828

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
            W+ MI GY ++G   + L +F  MK     PD +    +LSACS  G +  G
Sbjct: 829 SWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEG 881


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/614 (35%), Positives = 348/614 (56%), Gaps = 42/614 (6%)

Query: 22  CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPP 81
           C +  H+ QT + ++    +HH+     L  LL S          L Y L +F ++  P 
Sbjct: 18  CGTFDHLNQTTSILITSGLAHHT---FFLSDLLRS------ATKDLGYTLLLFDRLATPY 68

Query: 82  SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG 141
             + N  +R+ S S +P+  L  + ++ N G+  DR +FP +LKA ++        Q + 
Sbjct: 69  IFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNE-NPFQFYA 127

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201
              K G   D FVQ  LV  +  CG +  +R +F + + +D+V W+ +I+G  +NG   E
Sbjct: 128 HIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVE 187

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN-VALDAHLQSTLI 260
            L  F EM+ S VE DE+ +  +L A +   ++ +G  VH F +++  V  D ++ S L+
Sbjct: 188 ALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALV 247

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
            MY                               S+ G  +DA  +F++M  ++L+ W A
Sbjct: 248 DMY-------------------------------SKCGYCDDAVKVFNEMPTRNLVSWGA 276

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           +I+GY + N  +EALK+F EM + G++P++ T+ S ++ACA LG LDQ + +H Y+D++ 
Sbjct: 277 LIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSK 336

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
            G + ++  A++DMY+KCG ++ A  VFE++  ++V  WT+MIN  A+ GDA ++L  F+
Sbjct: 337 LGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFS 396

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500
           +M    + PNGVTF+GVL AC+H GLVDEG E+F  M  +Y + P  +HYGCMVDL GRA
Sbjct: 397 QMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRA 456

Query: 501 NLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560
             L EA++ +E+MP  P   +WG+L + C +H   EL E     L++L P H G  +LL+
Sbjct: 457 GRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLA 516

Query: 561 NIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLN 620
           N+Y++ ++W+    +R+ MK +G+ K  ACS IE+N  ++EF+  D+SH ++  +Y  L 
Sbjct: 517 NLYSRCQKWEAAANVRRLMKGKGVDKSPACSWIEVNGVIHEFIAFDKSHIESINVYMMLG 576

Query: 621 EVISELKPAGYVPD 634
            V ++LK A Y  D
Sbjct: 577 SVTAQLKLATYALD 590


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/599 (36%), Positives = 345/599 (57%), Gaps = 34/599 (5%)

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC--GKILDARLMFDKMSYRDIV 184
           + +   + E  Q H    KLG   D F  + LV        G +  A  +F +M      
Sbjct: 38  LKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSF 97

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            ++ M+ G+ ++   +E L  ++EM    V+PD      +L AC+R   +  G  VH  I
Sbjct: 98  QFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHI 157

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           +   +  D  +Q++LI+MY  C                               G++    
Sbjct: 158 LKLGLENDVFVQNSLISMYGKC-------------------------------GEIGVCC 186

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM-KPDKVTMLSVISACAHL 363
            +F+QM E+ +  WSA+I+ +A      + L+L  +M   G  + ++  ++SV+SAC HL
Sbjct: 187 AVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHL 246

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
           G LD  + +H ++ +N  G ++ V  ++I+MY KCGSL     +F++M ++N +S++ MI
Sbjct: 247 GALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMI 306

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
           +  A+HG  R  L  F +M ++ ++P+ + ++GVL ACSHAGLV EG + F  M  E+ I
Sbjct: 307 SGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGI 366

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
            P  +HYGCMVDL GRA  + EALEL+++MP  PN V+W SL++A +VH  ++  E AAK
Sbjct: 367 EPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAK 426

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
           QL +LD       V+LSN+YA+ +RW+DV + R +M  +G+ +    S +E+  +++ F+
Sbjct: 427 QLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFV 486

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYG 663
           + D  H Q++ +YE L ++  +LK  GY PD    L D+++EEK++ +  HS+KLA+ Y 
Sbjct: 487 SQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYA 546

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LI + + S IRIV+NLR+C DCH + KL+S ++ REI +RDR RFHH+KDG CSC+DYW
Sbjct: 547 LIHTSQGSPIRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 207/425 (48%), Gaps = 45/425 (10%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           +  CS++   KQ+HA+ILKL       +S     L+ + +L  +   S+ YA SIF Q+ 
Sbjct: 38  LKKCSNMEEFKQSHARILKLGLF---GDSFCASNLVATCAL--SDWGSMDYACSIFRQMD 92

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
              S   N  +R        + AL  + +M   G+  D F++P +LKA AR   + EGMQ
Sbjct: 93  ELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQ 152

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           VH    KLG  +D FVQ  L+ MYG CG+I     +F++M+ R +  WS +I  +   G+
Sbjct: 153 VHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGM 212

Query: 199 FDEVLNLFEEMKMSNV-EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
           + + L L  +M        +E +L  +LSAC+  G L  G +VH F++ N   L+  +++
Sbjct: 213 WSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVET 272

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
           +LI MY  CG +     LF K+  KN +  + M+SG +  G                   
Sbjct: 273 SLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHG------------------- 313

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA----QRIH 373
                       + +E L++F EM   G++PD +  + V++AC+H G++ +      R+ 
Sbjct: 314 ------------YGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMK 361

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDA 432
           L   ++     ++    ++D+  + G ++ A E+ + M    N + W S+++A  +H + 
Sbjct: 362 L---EHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNL 418

Query: 433 RNALI 437
           +   I
Sbjct: 419 QAGEI 423


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/609 (36%), Positives = 343/609 (56%), Gaps = 34/609 (5%)

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG--MYGACGKILDARLM 174
           +F+    L  + R + + E  QVH    KLG   D F  + LV        G +  A  +
Sbjct: 28  KFNEQGWLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSI 87

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           F ++       ++ MI G   +   +E L L+ EM    +EPD      +L ACS    L
Sbjct: 88  FSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVAL 147

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             G  +H  +    + +D  +Q+ LI+MY  C                            
Sbjct: 148 KEGVQIHAHVFKAGLEVDVFVQNGLISMYGKC---------------------------- 179

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM-KPDKVTM 353
              G +E A ++F+QM EK +  WS++I  +A      E L L  +M   G  + ++  +
Sbjct: 180 ---GAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESIL 236

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
           +S +SAC HLG  +  + IH  + +N    ++ V  ++IDMY KCGSLE    VF+ M  
Sbjct: 237 VSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAH 296

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           +N  S+T MI   AIHG  R A+  F+ M +E + P+ V ++GVL ACSHAGLV+EG + 
Sbjct: 297 KNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQC 356

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           F  M  E+ I P  +HYGCMVDL GRA +L+EA +L+++MP  PN V+W SL++AC+VH 
Sbjct: 357 FNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHH 416

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
            +E+ E AA+ + +L+  + G  ++L+N+YA+ K+W +V  +R  M E+ +++    S +
Sbjct: 417 NLEIGEIAAENIFRLNKHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLV 476

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW 653
           E N  VY+F++ D+S    + IY+ + ++  +LK  GY PD+   L+D++++EKR+ +  
Sbjct: 477 EANRNVYKFVSQDKSQPICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKH 536

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HS+KLA+ + LI + + S IRI +NLR+C DCH + K +S +Y REI +RDR RFHH+KD
Sbjct: 537 HSQKLAIAFALIQTSEGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKD 596

Query: 714 GVCSCKDYW 722
           G CSCKDYW
Sbjct: 597 GTCSCKDYW 605



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 202/414 (48%), Gaps = 39/414 (9%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           +  C S+   KQ HA ILKL   +   +S     L+ S +L  +   S+ YA SIFSQI 
Sbjct: 38  LKRCKSMEEFKQVHAHILKLGLFY---DSFCGSNLVASCAL--SRWGSMEYACSIFSQIE 92

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ 138
            P S   N  IR    S   + AL ++++ML  G+  D F++P +LKA +    L EG+Q
Sbjct: 93  EPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQ 152

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H    K G   D FVQ GL+ MYG CG I  A ++F++M  + +  WS +I  +    +
Sbjct: 153 IHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEM 212

Query: 199 FDEVLNLFEEMKMSNV-EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
           + E L L  +M        +E +L   LSAC+  G+ + G  +H  ++ N   L+  +++
Sbjct: 213 WHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKT 272

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
           +LI MY  CG ++    +F  +  KN    T M++G +  G+  +A  +F  M+E+    
Sbjct: 273 SLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEE---- 328

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA-QRIHLYI 376
                                      G+ PD V  + V+SAC+H G++++  Q  +   
Sbjct: 329 ---------------------------GLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQ 361

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
            ++     ++    ++D+  + G L+ A ++ + M  + N + W S+++A  +H
Sbjct: 362 FEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVH 415


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/594 (37%), Positives = 345/594 (58%), Gaps = 39/594 (6%)

Query: 136 GMQVHGLGTKLG-FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
           G Q+H L  + G F SD +  + L+ MY  C + LDAR  FD++   + V  + M  G  
Sbjct: 107 GRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCM 166

Query: 195 QNGLFDEVLNLFEEMKMSNVEP--DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
           +N L    L++F  M  S      DE      LSA +R  +      +H  +  + + LD
Sbjct: 167 RNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALV--SKIGLD 224

Query: 253 AH--LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310
               + +T+I  YA  G  D+                               AR +FD M
Sbjct: 225 GQTGVANTIIDAYAKGGGHDLGA-----------------------------ARKLFD-M 254

Query: 311 VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG--MKPDKVTMLSVISACAHLGVLDQ 368
           +++D++ W+ MI+ YA+N    EAL L+++M + G  ++ + VT+ +V+ ACAH G +  
Sbjct: 255 MDRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQT 314

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            +RIH  + +     ++ V  +++DMY+KCG +E A + F++++ +N++SW++MI  + +
Sbjct: 315 GKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGM 374

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG  + AL  F  M+   + PN +TFI VL ACSHAGL+ EGR  + +M  E+ I P  E
Sbjct: 375 HGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVE 434

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HYGCMVDL GRA  L EA  L++ M   P+  +WG+L++ACR++  +ELA+  A++L +L
Sbjct: 435 HYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFEL 494

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           D  + G  VLLSNIYA+   W++V  +R  +K RGI K    S +E+  + + F   D+S
Sbjct: 495 DATNSGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHLFYVGDKS 554

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
           H Q  +IY  L +++  +  AGYVP+  S L DL+ EE+  ++  HSEKLA+ + L++S 
Sbjct: 555 HPQYKEIYAYLEKLLERIHDAGYVPNTGSVLHDLDVEERESMLRIHSEKLAVAFALMNSV 614

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + S I ++KNLRVC DCH  IK+++K+  REI+IRD  RFHH+KDG+CSC DYW
Sbjct: 615 QGSVIHVIKNLRVCTDCHAAIKIITKLTGREIIIRDLKRFHHFKDGLCSCGDYW 668



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 17/233 (7%)

Query: 101 ALKVFLKMLNEG--LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           AL ++ KML  G  +  +  +   +L A A A  +  G ++H    ++G   + +V T +
Sbjct: 278 ALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSV 337

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           V MY  CGK+  A   F K+  ++I+ WS MI GY  +G   E L++F +M+ S ++P+ 
Sbjct: 338 VDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNY 397

Query: 219 MVLSKILSACSRAGNLSYGEAVH-----EFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           +    +L+ACS AG LS G   +     EF I+  V         ++ +    GC+D A 
Sbjct: 398 ITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGV----EHYGCMVDLLGRAGCLDEAY 453

Query: 274 GLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
           GL  ++ +K +  +  A++S       VE A++  +++ E D     A  SGY
Sbjct: 454 GLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFELD-----ATNSGY 501


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/690 (35%), Positives = 377/690 (54%), Gaps = 70/690 (10%)

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVG 160
           + +F +M  EG+  + F+F  +L  +A ++G+++ G  VH    K G  S  FV   L+ 
Sbjct: 142 MSLFFRMRAEGVWPNPFTFSSVLSMVA-SQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMN 200

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG + +AR++F +M  RD+V W+ ++ G   NG   E L LF + + S     E  
Sbjct: 201 MYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTEST 260

Query: 221 LSKILSACSRAGNL----------------SYGEAVHEFIIDNNVA--LDAHLQSTLI-- 260
            S +++ C+   +L                SYG  +   +   N A  LD  L   L+  
Sbjct: 261 YSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMS 320

Query: 261 ---------TMYANC---GCMDMAKGLF-----DKVLLKNLV------------------ 285
                     M   C   G + +A  LF     D V   +L                   
Sbjct: 321 GSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEASFPPQIHA 380

Query: 286 ------------VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
                       V TA++  YS+    E+A  IF  + +KD++ WSAM++ YA+      
Sbjct: 381 QVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNG 440

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGV-LDQAQRIHLYIDKNAFGGDLRVNNAII 392
           A   F +M + G+KP++ T+ S I ACA     +D  ++ H    K+     L V++A++
Sbjct: 441 ATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALV 500

Query: 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
            MYA+ GS+E+A+ VFER   R+++SW SM++ +A HG ++ AL  F +M+ E ID +G+
Sbjct: 501 SMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGL 560

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
           TF+ V+  C+HAGLV+EG++ F  M  +Y I P  +HY CMVDL+ RA  L E + L+E 
Sbjct: 561 TFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEG 620

Query: 513 MPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572
           MPF     IW +L+ ACRVH  +EL + AA++LL L+P      VLLSNIY+   +W++ 
Sbjct: 621 MPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEK 680

Query: 573 GELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYV 632
            E+RK M  + + KE  CS I++ N+V+ F+ +D+SH  ++QIY KL  + ++LK  GY 
Sbjct: 681 DEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLKQEGYC 740

Query: 633 PDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLV 692
           PD      D+ +++K  ++  HSE+LAL +GLI++   + + I KNLRV  D H  +K+V
Sbjct: 741 PDTSFVPHDVAEDQKEAMLAMHSERLALAFGLIATPPAAPLHIFKNLRVSGDGHTVMKMV 800

Query: 693 SKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           S++  REIV+RD  RFHH+K GVCSC D+W
Sbjct: 801 SEIEDREIVMRDCCRFHHFKSGVCSCGDFW 830



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 181/381 (47%), Gaps = 34/381 (8%)

Query: 81  PSRVSNKFIRAISWSHRPKHALKVFLKM-LNEGLTIDRFSFPPILKAIARAEGLLEGMQV 139
           P+R       + +W      AL  FL     +G  +   +   I+K        + G Q+
Sbjct: 18  PTRTPWTMPFSTTWQGFVHQALDHFLDAHRRQGRCVGGGALLGIIKICGSVPDRVLGKQL 77

Query: 140 HGLGTKLGFG-SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           H L  + G    D  V T LV MY     +LD R +F+ M  R++V W+ ++ GY Q G+
Sbjct: 78  HALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGV 137

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
             +V++LF  M+   V P+    S +LS  +  G +  G+ VH   I         + ++
Sbjct: 138 LLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNS 197

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           L+ MYA CG                                VE+AR++F +M  +D++ W
Sbjct: 198 LMNMYAKCGL-------------------------------VEEARVVFCRMETRDMVSW 226

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           + +++G   N    EAL+LF++ +       + T  +VI+ CA+L  L  A+++H  + K
Sbjct: 227 NTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLK 286

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALI 437
           + F     V  A++D Y K G L+ A +VF  M   +NV+SWT+MI+    +GD   A  
Sbjct: 287 HGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAA 346

Query: 438 FFNKMKDESIDPNGVTFIGVL 458
            F++M+++ + PN +T+  +L
Sbjct: 347 LFSRMREDGVAPNDLTYSTIL 367



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 153/307 (49%), Gaps = 24/307 (7%)

Query: 251 LDAHL-QSTLITMYANCGCMDMAKGLFDKVLLKNL--------------VVSTAMVSGYS 295
           LDAH  Q   +   A  G + +   + D+VL K L               V T++V  Y 
Sbjct: 43  LDAHRRQGRCVGGGALLGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYM 102

Query: 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
               V D R +F+ M++++++ W+++++GY +     + + LF  M+  G+ P+  T  S
Sbjct: 103 NWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSS 162

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           V+S  A  G++D  Q +H    K      + V N++++MYAKCG +E AR VF RM  R+
Sbjct: 163 VLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRD 222

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           ++SW +++    ++G    AL  F+  +         T+  V+  C++   +   R++ +
Sbjct: 223 MVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHS 282

Query: 476 SMTNEYNIPPKYEHYG----CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
           S+     +   +  YG     ++D + +A  L +AL++   M  + NVV W +++  C  
Sbjct: 283 SV-----LKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQ 337

Query: 532 HGEIELA 538
           +G+I LA
Sbjct: 338 NGDIPLA 344



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 122/265 (46%), Gaps = 9/265 (3%)

Query: 15  TSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIF 74
           T + I + S  +   Q HAQ++K   +++     +   L+ S+S   +T      ALSIF
Sbjct: 362 TYSTILTVSEASFPPQIHAQVIK---TNYECTPTVGTALMVSYSKLCSTEE----ALSIF 414

Query: 75  SQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR-AEGL 133
             I        +  +   + +     A   F+KM   GL  + F+    + A A  A G+
Sbjct: 415 KMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGV 474

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
             G Q H +  K        V + LV MY   G I +A+ +F++ + RD++ W+ M+ GY
Sbjct: 475 DLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGY 534

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII-DNNVALD 252
            Q+G   + L++F +M++  ++ D +    ++  C+ AG +  G+   + ++ D  +   
Sbjct: 535 AQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPT 594

Query: 253 AHLQSTLITMYANCGCMDMAKGLFD 277
               + ++ +Y+  G +D    L +
Sbjct: 595 MDHYACMVDLYSRAGKLDETMSLIE 619


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/559 (37%), Positives = 338/559 (60%), Gaps = 10/559 (1%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           G++ DAR +FD + + D V ++ ++  +F  G  D    +F  M + +V       + ++
Sbjct: 55  GRLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTS----WNTMV 110

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NL 284
           S  S+ G +   EA+   +   N    A   + ++   A+ G M  A+ LF     K + 
Sbjct: 111 SGLSKNGAIEEAEAMFRAMPARN----AVSWNAMVAARASSGDMGAAENLFRNAPEKTDA 166

Query: 285 VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM-QV 343
           ++ TAMVSGY   G V+ A   F  M  ++L+ W+A+++GY +N+   +AL++F  M + 
Sbjct: 167 ILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVED 226

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
             ++P+  T+ SV+  C++L  L   +++H +  K   G  + V  +++ MY KCG L+ 
Sbjct: 227 AIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDD 286

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
           A ++F+ M  +++++W +MI+ +A HG  R A+  F KMKDE + P+ +T + VL AC H
Sbjct: 287 ACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIH 346

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
            GL D G + F +M   YNI P+ +HY CMVDL  RA LL  A+ ++ +MPF P+   +G
Sbjct: 347 TGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYG 406

Query: 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
           +L+ ACRV+  +E AEFAA++L++ DP + GA V L+NIYA   RW DV  +R+ MK+  
Sbjct: 407 TLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNA 466

Query: 584 ILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLE 643
           ++K    S +E+    +EF + DR H Q D I++KL+ +   +K  GY PD+  AL D+E
Sbjct: 467 VVKTPGYSWMEIKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVE 526

Query: 644 DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIR 703
           +  K ++++ HSEKLA+ +GLIS+     +RI KNLR+C DCHN  KL+SK+  REI++R
Sbjct: 527 ESLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILR 586

Query: 704 DRTRFHHYKDGVCSCKDYW 722
           D TRFHH++ G CSC DYW
Sbjct: 587 DTTRFHHFRGGHCSCGDYW 605



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 131/265 (49%), Gaps = 35/265 (13%)

Query: 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
           +D  + T +V  Y   G +  A   F  M  R++V W+ ++ GY +N    + L +F+ M
Sbjct: 164 TDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTM 223

Query: 210 -KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
            + + V+P+   LS +L  CS    L +G  VH++ +   +     + ++L++MY  CG 
Sbjct: 224 VEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGD 283

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           +D A  LFD++  K++V   AM+SGY                               A++
Sbjct: 284 LDDACKLFDEMHTKDIVAWNAMISGY-------------------------------AQH 312

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
              ++A+KLF +M+  G+ PD +T+L+V++AC H G+ D   +    + + A+  + +V+
Sbjct: 313 GGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETM-QEAYNIEPQVD 371

Query: 389 --NAIIDMYAKCGSLESAREVFERM 411
             + ++D+  + G LE A  +   M
Sbjct: 372 HYSCMVDLLCRAGLLERAVNMIHSM 396



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 1/169 (0%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS-FPPILKAIA 128
           A+  F  +P       N  +     + R   AL+VF  M+ + +     S    +L   +
Sbjct: 185 AMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCS 244

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
               L  G QVH    KL  G    V T L+ MY  CG + DA  +FD+M  +DIV W+ 
Sbjct: 245 NLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNA 304

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           MI GY Q+G   + + LFE+MK   V PD + L  +L+AC   G   +G
Sbjct: 305 MISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFG 353



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 127/297 (42%), Gaps = 44/297 (14%)

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRA---GQVEDARLIFDQ------------------- 309
           A+  F    LK       +++GY++A   G++ DAR +FD                    
Sbjct: 26  AEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSCHFAC 85

Query: 310 ------------MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
                       M  +D+  W+ M+SG ++N   +EA  +F  M       + V+  +++
Sbjct: 86  GDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPA----RNAVSWNAMV 141

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
           +A A  G +  A+ +     +     D  +  A++  Y   G+++ A E F  M  RN++
Sbjct: 142 AARASSGDMGAAENLFRNAPEKT---DAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLV 198

Query: 418 SWTSMINAFAIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           SW +++  +  +  A +AL  F  M +D  + PN  T   VL  CS+   +  GR++   
Sbjct: 199 SWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVH-Q 257

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
              +  +         ++ ++ +   L +A +L + M    ++V W ++++    HG
Sbjct: 258 WCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEM-HTKDIVAWNAMISGYAQHG 313


>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 593

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/581 (39%), Positives = 350/581 (60%), Gaps = 6/581 (1%)

Query: 15  TSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIF 74
           +  AIS+ +SL  +K+ HAQ+++ +  H   +S+    ++  ++L   +P SL  A  +F
Sbjct: 17  SQRAISNSTSLNSIKELHAQLVR-AQMHIDPSSI--SEVIKHYAL---SPQSLPKAHFVF 70

Query: 75  SQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL 134
           +QI  P   V N  I  +S S RP  A+  +  M  +G+     +F  + K+ AR   + 
Sbjct: 71  NQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVR 130

Query: 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
           +G  V     KLGF S  FV   L+ MY   G++  A+ +FD M  RD+V W+ +I GY+
Sbjct: 131 QGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYY 190

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           Q   F +VL+LF EM+  NV  D + + K +SA         G+ + ++I ++ V +D +
Sbjct: 191 QFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLY 250

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           L +TLI MY   G +D A  +F ++  KN+V   AM+ GY++ G +  A+ +F++M  +D
Sbjct: 251 LGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRD 310

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           +I W++MI GY+      EA+KLF EM V  +KPD++T+ + +SACAHLG LD  + +H 
Sbjct: 311 VISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHD 370

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           YI K+    D+ V N++IDMY KCG +E A +VF  M+ R+ +SWTS+I+  A++G A +
Sbjct: 371 YIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAES 430

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           AL  F++M  E I P   TF+GVL AC+H GLVD+G E F SM N Y + P+ +HYGC+V
Sbjct: 431 ALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVV 490

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DL  R+  L  A   ++ MP  P+VVIW  L++AC++HG + LAE  +K+LL LDP ++G
Sbjct: 491 DLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNG 550

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
             VL S+ YA   RW DV ++RK M+   + K  A S IE+
Sbjct: 551 NYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEV 591


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/602 (38%), Positives = 356/602 (59%), Gaps = 9/602 (1%)

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
           T   +L  AL++F  +P       N  +   +   R + AL+  + M +E   ++ +SF 
Sbjct: 96  TKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFG 155

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
             L A A    L  G+Q+HGL  K  +  D ++ + LV MY  C  +  A+  FD M  R
Sbjct: 156 SALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVR 215

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           +IV W+ +I  Y QNG   + L +F  M    +EPDE+ L+ + SAC+    +  G  +H
Sbjct: 216 NIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIH 275

Query: 242 EFIIDNN-VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
             ++ ++    D  L + L+ MYA C  ++ A+ +FD++ L+++V  T+MVSGY++A  V
Sbjct: 276 ARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSV 335

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
           + ARL+F  M+E++++ W+A+I+GY +N   +EA++LF  ++   + P   T  ++++AC
Sbjct: 336 KAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNAC 395

Query: 361 AHLGVLDQAQRIHLYIDKNAF------GGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           A+L  L   ++ H +I K+ F        D+ V N++IDMY KCG +E  R VFERM  R
Sbjct: 396 ANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLER 455

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           + +SW +MI  +A +G    AL  F +M      P+ VT IGVL ACSHAGLV+EGR  F
Sbjct: 456 DNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYF 515

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
            SMT E+ + P  +HY CMVDL GRA  L EA  L++TMP  P+ V+WGSL+AAC+VHG 
Sbjct: 516 QSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGN 575

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
           I L ++ A++LL++DP + G  VLLSN+YA+  RW+DV  +RK M++ G++K+  CS I 
Sbjct: 576 ITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWIS 635

Query: 595 MNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWH 654
           + + ++ F+  D+ H     IY  L  +  ++K  GYVP+        E+E   E+IL H
Sbjct: 636 IQSHLHVFMVKDKRHPHKKDIYLILKILTEQMKRVGYVPEADDD-EPYEEESDSELIL-H 693

Query: 655 SE 656
           SE
Sbjct: 694 SE 695



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 196/421 (46%), Gaps = 69/421 (16%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           KH L    K++ +   +D   F  +L    +++ + E   VH    K  F S+ F+Q  L
Sbjct: 3   KHGL--VRKVVGDLSFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRL 60

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE----------- 207
           V +YG CG + DAR +FD M  R+   W+ ++    + G  DE LNLF+           
Sbjct: 61  VDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWN 120

Query: 208 --------------------EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
                               +M   +   +E      LSAC+   +LS G  +H  I  +
Sbjct: 121 AMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKS 180

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
             +LD ++ S L+ MY+ C  +  A+  FD + ++N+V                      
Sbjct: 181 RYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIV---------------------- 218

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
                     W+++I+ Y +N    +AL++F  M  CG++PD++T+ SV SACA L  + 
Sbjct: 219 ---------SWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIR 269

Query: 368 QAQRIHLYIDK-NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           +  +IH  + K + +  DL + NA++DMYAKC  +  AR VF+RM  R+V+S TSM++ +
Sbjct: 270 EGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGY 329

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           A     + A + F+ M    ++ N V++  ++   +  G  +E   +F  +  E   P  
Sbjct: 330 AKASSVKAARLMFSNM----MERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTH 385

Query: 487 Y 487
           Y
Sbjct: 386 Y 386



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 156/299 (52%)

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           D    +K+L  C ++ ++     VH  II    + +  +Q+ L+ +Y  CG ++ A+ +F
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           D +  +N     A++   ++ G +++A  +F  M E+D   W+AM+SG+A+ +  +EAL+
Sbjct: 78  DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALR 137

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
              +M       ++ +  S +SACA L  L    +IH  I K+ +  D+ + +A++DMY+
Sbjct: 138 FVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYS 197

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KC  + SA+  F+ M  RN++SW S+I  +  +G A  AL  F +M +  I+P+ +T   
Sbjct: 198 KCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLAS 257

Query: 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
           V  AC+    + EG +I A +               +VD++ +   + EA  + + MP 
Sbjct: 258 VASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/583 (38%), Positives = 328/583 (56%), Gaps = 40/583 (6%)

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207
           F SDPF+ T L+  Y A G +  AR +FD+   ++I  W+ ++         DE L    
Sbjct: 104 FRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLA 163

Query: 208 EMKMSNVEPDEMVLSKILSAC-----SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM 262
           +M    V  D    +  L AC     S A   +    VH   I    AL  H+ +TLI  
Sbjct: 164 DMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDC 223

Query: 263 YANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
           YA                               + G V  A  +F  M E++++ WSAMI
Sbjct: 224 YA-------------------------------KLGIVRYAESVFAAMPERNVVSWSAMI 252

Query: 323 SGYAENNHPQEALKLFNEMQV--CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
             YA+N  P +A++LF +M      + P+ +T++SV++ACA +  L   + +H YI +  
Sbjct: 253 GCYAKNERPADAIELFKDMMASDADLVPNSITIVSVLNACAGVNALSHGKLLHAYILRRG 312

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFF 439
           F   + V NA++ MY +CG LE  R +F+ +  RR+V+SW S+I+ + +HG    A+  F
Sbjct: 313 FDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLISGYGMHGFGPEAVQVF 372

Query: 440 NKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499
            +M      P+ +TFI VL ACSHAGLV+EG+ +F SM  EY + P+ EHY CMVDL GR
Sbjct: 373 EEMIHVGFSPSIITFISVLGACSHAGLVNEGKMLFESMV-EYGVTPRAEHYACMVDLLGR 431

Query: 500 ANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLL 559
           A  L EA+EL+ +M   P+  +WG+L+ ACR+HG +E AE A   L  L+P + G  VLL
Sbjct: 432 AGQLDEAMELIRSMHIEPSPQVWGALLGACRIHGHVEYAEIACSHLFDLEPRNAGNYVLL 491

Query: 560 SNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKL 619
           ++IYA+ K    VG L++ ++E  + K   CS IE+  +++ F + D  +   +Q+   +
Sbjct: 492 ADIYARAKLHNQVGVLKELLEEHALEKVTGCSWIEVKKKLHSFTSVDNKNPPVEQLQALI 551

Query: 620 NEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNL 679
            E ++++K  GYVPD    L D+E EEK  +++ HSEKLA+ +GLI++     IRI KNL
Sbjct: 552 GEFVAQMKNQGYVPDTGIVLYDIEGEEKERILIGHSEKLAVAFGLINTCSGEVIRITKNL 611

Query: 680 RVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           R+CEDCH+  K +SK   REIV+RD  RFHH++DGVCSC DYW
Sbjct: 612 RLCEDCHSVTKFISKFTEREIVVRDVNRFHHFRDGVCSCGDYW 654



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 175/391 (44%), Gaps = 44/391 (11%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
            +L  A  +F + P     V N  ++A++ +     AL     M   G+ +D +S+   L
Sbjct: 122 GALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLADMGRLGVPVDSYSYTHGL 181

Query: 125 KAI-----ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           KA      + A       +VH    + G+     V T L+  Y   G +  A  +F  M 
Sbjct: 182 KACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDCYAKLGIVRYAESVFAAMP 241

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE--PDEMVLSKILSACSRAGNLSYG 237
            R++V WS MI  Y +N    + + LF++M  S+ +  P+ + +  +L+AC+    LS+G
Sbjct: 242 ERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIVSVLNACAGVNALSHG 301

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS-TAMVSGYSR 296
           + +H +I+         + + L+ MY  CGC+++ + +F  +  +  VVS  +++SGY  
Sbjct: 302 KLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLISGYG- 360

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
                                    + G+       EA+++F EM   G  P  +T +SV
Sbjct: 361 -------------------------MHGFGP-----EAVQVFEEMIHVGFSPSIITFISV 390

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-R 413
           + AC+H G++++ +   L+     +G   R  +   ++D+  + G L+ A E+   M   
Sbjct: 391 LGACSHAGLVNEGKM--LFESMVEYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIE 448

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKD 444
            +   W +++ A  IHG    A I  + + D
Sbjct: 449 PSPQVWGALLGACRIHGHVEYAEIACSHLFD 479



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 121/272 (44%), Gaps = 24/272 (8%)

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           D V   +  +ST ++  Y+  G +  AR +FD+   K++  W+A++   A  +H  EAL 
Sbjct: 101 DPVFRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALA 160

Query: 337 LFNEMQVCGMKPDKVTMLSVISAC-----AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
              +M   G+  D  +    + AC     +H     + + +H +  +  +     V   +
Sbjct: 161 RLADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTL 220

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM--KDESIDP 449
           ID YAK G +  A  VF  M  RNV+SW++MI  +A +    +A+  F  M   D  + P
Sbjct: 221 IDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVP 280

Query: 450 NGVTFIGVLYACSHAGLVDEG--------REIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501
           N +T + VL AC+    +  G        R  F S+ +  N          ++ ++ R  
Sbjct: 281 NSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLN---------ALMAMYMRCG 331

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRVHG 533
            L     + + +    +VV W SL++   +HG
Sbjct: 332 CLEVGRHIFKWIGHRRDVVSWNSLISGYGMHG 363



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 119/272 (43%), Gaps = 10/272 (3%)

Query: 8   TKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSL 67
           T  L    + + S   +   +++ HA  ++  ++ H+  +  L        +       +
Sbjct: 178 THGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDCYAKLGI-------V 230

Query: 68  YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML--NEGLTIDRFSFPPILK 125
            YA S+F+ +P       +  I   + + RP  A+++F  M+  +  L  +  +   +L 
Sbjct: 231 RYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIVSVLN 290

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR-DIV 184
           A A    L  G  +H    + GF S   V   L+ MY  CG +   R +F  + +R D+V
Sbjct: 291 ACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVV 350

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ +I GY  +G   E + +FEEM      P  +    +L ACS AG ++ G+ + E +
Sbjct: 351 SWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNEGKMLFESM 410

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           ++  V   A   + ++ +    G +D A  L 
Sbjct: 411 VEYGVTPRAEHYACMVDLLGRAGQLDEAMELI 442


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/600 (35%), Positives = 343/600 (57%), Gaps = 31/600 (5%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +++  A A+ L EG ++H            F+   LV MYG CG +++A+ +FD M +++
Sbjct: 47  LIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKN 106

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +  W++++ G+ Q+G   E + LF  M      PD + L K + +C  A  LS G  +H 
Sbjct: 107 VFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIH- 165

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
                             +  A+CG MD            +LV + A+++ Y + G + +
Sbjct: 166 ------------------SAAASCG-MD-----------SDLVTANAIINMYGKCGSIGE 195

Query: 303 ARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
           A  +F +M EK++I WS MI+ + +N    EAL  F  MQ  GM+ D++T +SV+ A   
Sbjct: 196 AFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTS 255

Query: 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
           +G L+  + +H+ I        + V N +++MY KCGS + AR+VF+ M  +NV+SW +M
Sbjct: 256 VGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAM 315

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           + A+  +G +R AL  F+ M  E + PN +TF+ +LY CSH+G   +    F  M  ++ 
Sbjct: 316 LAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFG 375

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           I P+  H+GC++D+ GR+  L EA EL++ MP   + V+W SL+ AC  H + + A  AA
Sbjct: 376 ITPREVHFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAA 435

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
           ++  Q +P    A ++LSN+YA  K+W +  ++RK M++ G+ K+   S IE++ +V+EF
Sbjct: 436 EEAFQREPRCAAAYIMLSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEF 495

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCY 662
           +  D  H    +I++ L  ++SE++  GY PD    +  +E+EEK EV+ +HSEKLA+ +
Sbjct: 496 VAGDSIHPDKSRIFKTLQRLMSEMRIKGYEPDRKVVIHSMEEEEKDEVLFYHSEKLAVAF 555

Query: 663 GLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           G+ S+   + + IVKNLRVC DCH+ IK +S V  R I +RD  RFHH+  G CSC DYW
Sbjct: 556 GIASTPPRTPLCIVKNLRVCSDCHSAIKFISGVEGRRITVRDSNRFHHFDRGECSCGDYW 615



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 160/338 (47%), Gaps = 35/338 (10%)

Query: 95  SHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFV 154
           S R   A+++F +M  EG   DR +    + +   A+ L +G ++H      G  SD   
Sbjct: 120 SGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVT 179

Query: 155 QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV 214
              ++ MYG CG I +A  +F +M  ++++ WS MI  + QN L DE L  F+ M+   +
Sbjct: 180 ANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGM 239

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274
           E D +    +L A +  G L  G+A+H  I+   +     + +TL+ MY  CG  D A+ 
Sbjct: 240 ELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARD 299

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEA 334
           +FD ++ KN+V   AM++ Y + G+                                +EA
Sbjct: 300 VFDSMVEKNVVSWNAMLAAYGQNGR-------------------------------SREA 328

Query: 335 LKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AII 392
           L LF+ M + G++P+ +T ++++  C+H G    A   H    +  FG   R  +   +I
Sbjct: 329 LALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVS-HFVEMRQDFGITPREVHFGCLI 387

Query: 393 DMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           DM  + G LE A E+ + M    + + WTS++ A   H
Sbjct: 388 DMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTH 425



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 2/180 (1%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
            S+  A ++F+++P       +  I A   +     AL  F  M  EG+ +DR ++  +L
Sbjct: 191 GSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVL 250

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            A      L  G  +H      G  +   V   LV MYG CG   DAR +FD M  +++V
Sbjct: 251 DAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVV 310

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ M+  Y QNG   E L LF+ M +  V P+++    IL  CS +G   + +AV  F+
Sbjct: 311 SWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGK--FKDAVSHFV 368


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/625 (36%), Positives = 365/625 (58%), Gaps = 10/625 (1%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P  + +  C SL  +KQ  AQ++    +   +N      L+   +L  +    L Y   I
Sbjct: 59  PLLSILERCKSLVQLKQIQAQMVS---TGLIENGFAASRLVAFCALSES--KELDYCTRI 113

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAEG 132
             +I        N  IR    S   +    ++ +ML  G L  D  ++P +LK       
Sbjct: 114 LYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYS 173

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
              G+ V G   K GF  D FV    + M  +CG++  A  +F+K   RD+V W+ MI G
Sbjct: 174 SCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITG 233

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
             + GL  E + +++EM+   V P+E+ +  ++S+CS+  +L+ G+  H +I ++ +   
Sbjct: 234 CVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFT 293

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             L + L+ MY  CG +  A+ LFD +  K LV  T MV GY+R G ++ AR I  ++ E
Sbjct: 294 IPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPE 353

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           K ++ W+A+ISG  +    +EAL LF+EMQ+  ++PDKVTM++ +SAC+ LG LD    I
Sbjct: 354 KSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWI 413

Query: 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDA 432
           H YI+++    D+ +  A++DMYAKCG++  A +VFE + +RN ++WT++I   A+HG+A
Sbjct: 414 HHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNA 473

Query: 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492
           ++AL +F+KM    I P+ +TF+GVL AC H GLV+EGR+ F+ M++++N+ PK +HY C
Sbjct: 474 QDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSC 533

Query: 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552
           MVDL GRA  L EA ELV+ MP A +  + G+L  ACRV+G +++ E  A +LL++DP  
Sbjct: 534 MVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQD 593

Query: 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQT 612
            G  VLL+++Y++ K W++    RK M ++G+ K   CS +E+N  V+EF+  D SH Q+
Sbjct: 594 SGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEFVVRDVSHPQS 653

Query: 613 DQIYEKLNEVISEL----KPAGYVP 633
           + IYE L  +  +L    +  GY P
Sbjct: 654 EWIYECLVTLTKQLDVIVRKHGYFP 678


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/539 (39%), Positives = 320/539 (59%), Gaps = 33/539 (6%)

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           ++VMI  Y  +   ++   L+ EM+   V P+ +  S ++ +C R  +L  G  +H  I+
Sbjct: 136 YNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARIL 195

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
            +    D  L +TL+ +Y+ C          DK                      E+A  
Sbjct: 196 RDGHQSDNLLLTTLMDLYSCC----------DKF---------------------EEACK 224

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC--GMKPDKVTMLSVISACAHL 363
           +FD++ + D + W+ +IS    N   ++AL++F+ MQ    G +PD VT L ++ ACA+L
Sbjct: 225 VFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANL 284

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423
           G L+  +R+H YI+++ + G L + N++I MY++CG LE A  +F+RM  RNV+SW++MI
Sbjct: 285 GALEFGERVHNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMI 344

Query: 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
           + FA+HG  R A+  F +M+   + P+  T  GVL ACSH GLVD+G   F  M+  + I
Sbjct: 345 SGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGI 404

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
            P   HYGCMVDL GRA LL +A +L+ +M   P+  +W +L+ ACR+H    L E    
Sbjct: 405 EPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIG 464

Query: 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFL 603
            L++L     G  VLL NIY+    W  V +LRK MKE+GI     CS IE+  +V+EF+
Sbjct: 465 HLIELKAQEAGDYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFV 524

Query: 604 TADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYG 663
             D  H +TD+IYE L+E+  +LK AGYV ++ S L +L  EEK   + +HSEKLA+ +G
Sbjct: 525 VDDILHPRTDEIYEMLDEIGKQLKIAGYVAELSSELHNLGAEEKGNRLSYHSEKLAIAFG 584

Query: 664 LISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           ++++   + IR+ KNLR+C DCHNF K++S  Y RE+VIRDRTRFHH+++G CSC  YW
Sbjct: 585 VLATPPGTTIRVAKNLRICVDCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW 643



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 210/422 (49%), Gaps = 48/422 (11%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS-SLYYALSIFSQI 77
           I SCS  TH+ Q HA I++ S     QN  +    L+  +L   +PS  + Y+  +FSQI
Sbjct: 75  IKSCSKKTHLLQIHAHIIRTSLI---QNHFISLQFLSRAAL---SPSRDMGYSSQVFSQI 128

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
             P     N  IRA S SH P+    ++ +M   G+  +  S   ++K+  R   L+ G+
Sbjct: 129 MKPSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGL 188

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           Q+H    + G  SD  + T L+ +Y  C K  +A  +FD++   D V W+V+I     N 
Sbjct: 189 QIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNR 248

Query: 198 LFDEVLNLFEEMKMS--NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
              + L +F+ M+ +    EPD++    +L AC+  G L +GE VH +I ++      +L
Sbjct: 249 RTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNL 308

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            ++LITMY+ CG ++ A  +F ++  +N+V  +AM+SG++                    
Sbjct: 309 CNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFA-------------------- 348

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
                 + GY      +EA++ F +MQ  G+ PD  T+  V+SAC+H G++D      ++
Sbjct: 349 ------MHGYG-----REAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGL---MF 394

Query: 376 IDK--NAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHG 430
            D+    FG +  +++   ++D+  + G L+ A ++   M  + +   W +++ A  IH 
Sbjct: 395 FDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHR 454

Query: 431 DA 432
            A
Sbjct: 455 HA 456



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 125/250 (50%), Gaps = 6/250 (2%)

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +F Q+++     ++ MI  Y+ ++ P++   L+ EM+  G+ P+ ++   V+ +C  +  
Sbjct: 124 VFSQIMKPSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISS 183

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L    +IH  I ++    D  +   ++D+Y+ C   E A +VF+ + + + +SW  +I+ 
Sbjct: 184 LMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISC 243

Query: 426 FAIHGDARNALIFFNKMKD--ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483
              +   R+AL  F+ M+   +  +P+ VT + +L AC++ G ++ G  +  +   E+  
Sbjct: 244 CIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVH-NYIEEHGY 302

Query: 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
                    ++ ++ R   L +A  + + M    NVV W ++++   +HG    A  A +
Sbjct: 303 DGALNLCNSLITMYSRCGRLEKAYSIFKRMD-ERNVVSWSAMISGFAMHGYGREAIEAFE 361

Query: 544 QLLQL--DPD 551
           Q+ QL   PD
Sbjct: 362 QMQQLGVSPD 371


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/718 (32%), Positives = 386/718 (53%), Gaps = 42/718 (5%)

Query: 9   KPLTLPTSTAISSCSSLTHMK---QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           KP  +  +T +S     T +K   Q H+ I++   S    + ++   L+ S+        
Sbjct: 140 KPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFS---ASLIVFNSLVDSY----CKTC 192

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
            L  A  +FS++P   S   N  I   +     + ALK+F++M N       F+F  +L 
Sbjct: 193 CLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLG 252

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
               +E ++ G Q+HGL  K  +  D FV   L+  Y     I  A+ +FD+M   D V 
Sbjct: 253 MSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVS 312

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           ++++I GY  NG +++  +LF+ ++ ++ +      + +LS  +   NLS G   H   +
Sbjct: 313 YNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAV 372

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
                 +  + + L+ MYA C                                + EDA  
Sbjct: 373 VTTAVSEVQVGNALVDMYAKCE-------------------------------KFEDANR 401

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           IF  +  ++ + W+A+IS Y +    +EALK+F EM    +  D+ T  S + A A+L  
Sbjct: 402 IFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLAS 461

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           +   +++H  + +      +   + ++DMYA CGS++ A EVF+ M  RN++ W ++I+A
Sbjct: 462 VSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISA 521

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
           ++ +GDA      F  M +  + P+ V+F+ VL ACSH GLV++    F SMT  Y + P
Sbjct: 522 YSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDP 581

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
           + +HY  M+D+  R+    EA  L+  MPF P+ V+W S++ +CR+H   +LA+ AA QL
Sbjct: 582 RRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQL 641

Query: 546 LQLDPDHD-GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
            ++D   D  A V +SNIYA+  +W++  +++K+M+ERG+ K  A S +E+++ V+ F  
Sbjct: 642 FKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTA 701

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            DR+H QT+QI  K+N ++  +   GY PD    L ++++E K E + +HSE+LA+ + L
Sbjct: 702 NDRTHPQTEQIRRKINSLVELMDKEGYKPDTSCTLQNVDEEMKIESLKYHSERLAIAFAL 761

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           I++ + S I I+KNLR C DCH  IK++SK+  REI +RD +RFHH++DG CSC DYW
Sbjct: 762 INTPEGSPIIIMKNLRACVDCHAAIKVISKIVGREITVRDSSRFHHFRDGSCSCGDYW 819



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/474 (24%), Positives = 213/474 (44%), Gaps = 35/474 (7%)

Query: 89  IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148
           I   S +++PK A  ++ +M   G+  D  +F  +L        L E +Q+H    + GF
Sbjct: 115 IGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGF 174

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
            +   V   LV  Y     +  A  +F +M  +D V ++VMI GY + G  +E L LF +
Sbjct: 175 SASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQ 234

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M+  + +P     + +L     + ++ +G+ +H   I  +   D  + + L+  Y+    
Sbjct: 235 MRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDY 294

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           +D+AK LFD                               +M E D + ++ +I+GYA N
Sbjct: 295 IDLAKNLFD-------------------------------EMPELDGVSYNIIITGYAWN 323

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
              +++  LF  +Q            +++S  A    L   ++ H          +++V 
Sbjct: 324 GQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVG 383

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           NA++DMYAKC   E A  +F  +  RN + WT++I+ +   G    AL  F +M  E++ 
Sbjct: 384 NALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVH 443

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
            +  TF   L A ++   V  G+++ +S+     +   +     +VD++     +++A+E
Sbjct: 444 GDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSG-SVLVDMYANCGSMKDAIE 502

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIE--LAEFAAKQLLQLDPDHDGALVLLS 560
           + + MP   N+V W +L++A   +G+ E   + FA      L PD    L +L+
Sbjct: 503 VFKEMP-DRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLT 555



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 104/187 (55%)

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
           A+ LFD++  +N      MVSGY ++  +  AR +F+ M  ++ + W+ MI GY++NN P
Sbjct: 65  ARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQP 124

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           +EA  L+ EM   G+KPD +T  +++S       L +  +IH +I +  F   L V N++
Sbjct: 125 KEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSL 184

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           +D Y K   L+ A ++F  M  ++ +S+  MI  +  +G    AL  F +M++    P+G
Sbjct: 185 VDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSG 244

Query: 452 VTFIGVL 458
            TF  +L
Sbjct: 245 FTFAAML 251


>gi|297743669|emb|CBI36552.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 251/753 (33%), Positives = 388/753 (51%), Gaps = 88/753 (11%)

Query: 17  TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
           T I+  S+L  + QTHAQI+   +  H+    + KL      L     +SL     +FS 
Sbjct: 15  TLINRVSTLHQLNQTHAQIIL--NGLHNDLVTVTKLTHKLSHLKAIDQASL-----LFST 67

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLE 135
           IP P   + N  IRA S ++ P  A+ ++  +     L  D F++  +   I+ A  L  
Sbjct: 68  IPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFV---ISGASSLGL 124

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G+ +H      GFGSD FV + +V  Y    ++  AR +FD M  RD V W+ M+ G  +
Sbjct: 125 GLLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVK 184

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           N  FDE + +F +M    +  D   ++ +L   +   +L+ G  +               
Sbjct: 185 NSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQ-------------- 230

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
                       C+ M  G           V T +   YS+ G++E ARL+F Q+ + DL
Sbjct: 231 ------------CLAMKVGFHSHAY-----VITGLACLYSKCGEIETARLLFGQIGQPDL 273

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + ++AMISGY  NN  + +++LF E+ V G K +  +++ +I      G L   + IH +
Sbjct: 274 VSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGF 333

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
             K+    +  V+ A+  +Y++   +ESAR +F+    +++ SW +MI+ +A +G    A
Sbjct: 334 CTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKA 393

Query: 436 LIFFNKMKDESIDPN--------------------------------------------- 450
           +  F +M+   + PN                                             
Sbjct: 394 ISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFMLHSRVSP 453

Query: 451 -GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
            GVTF+ VLYACSHAGLV EG EIF SM +++   P  EHY CMVDL GRA  L +AL+ 
Sbjct: 454 TGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDF 513

Query: 510 VETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW 569
           +  MP  P   +WG+L+ AC +H +  LA  A+ +L +LDP + G  VLLSNIY+  + +
Sbjct: 514 IRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNY 573

Query: 570 QDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPA 629
            +   +R  +K R + K   C+ IE+ N ++ F + D+SH Q   IY  L ++  +++ A
Sbjct: 574 PEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREA 633

Query: 630 GYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFI 689
           G+  +  +AL D+E+EEK  ++  HSEKLA+ +GLI+S+  + IRI+KNLRVC DCHN  
Sbjct: 634 GFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNAT 693

Query: 690 KLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           K +SK+  R IV+RD  RFHH+KDG+CSC DYW
Sbjct: 694 KFISKITERVIVVRDANRFHHFKDGICSCGDYW 726



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 152/352 (43%), Gaps = 38/352 (10%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           ML  G+   R  F   L  I R   L +  Q H      G  +D    T L         
Sbjct: 1   MLYRGIASTRNLF---LTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKA 57

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILS 226
           I  A L+F  +   D+  ++V+I  +  N      ++L+  ++ S  +EPD         
Sbjct: 58  IDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPD--------- 108

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV 286
                 N +Y      F+I    +L   L     ++ A  G               +L V
Sbjct: 109 ------NFTYA-----FVISGASSLGLGLLLHAHSIVAGFG--------------SDLFV 143

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346
            +A+V+ Y +  +V  AR +FD M+E+D + W+ M+SG  +N+   EA+ +F +M   G+
Sbjct: 144 GSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGI 203

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE 406
             D  T+ +V+   A L  L     I     K  F     V   +  +Y+KCG +E+AR 
Sbjct: 204 GFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARL 263

Query: 407 VFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           +F ++ + +++S+ +MI+ +  + +  +++  F ++       N  + +G++
Sbjct: 264 LFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 247/723 (34%), Positives = 388/723 (53%), Gaps = 53/723 (7%)

Query: 13  LPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT-----TTPSSL 67
           +P ST +S+  +L + K            H++Q S  L      FS  T        S +
Sbjct: 40  IPPSTYLSNHFTLLYSK--------CGSLHNAQTSFHLTQYPNVFSYNTLINAYAKHSLI 91

Query: 68  YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
           + A  +F +IP P     N  I A +        L++F ++    L +D F+   ++ A 
Sbjct: 92  HIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITAC 151

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY---RDIV 184
               GL+   Q+H      G      V   ++  Y   G + +AR +F +M     RD V
Sbjct: 152 GDDVGLVR--QLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEV 209

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ MI    Q+    E + LF EM    ++ D   ++ +L+A +   +L  G   H  +
Sbjct: 210 SWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMM 269

Query: 245 IDNNVALDAHLQSTLITMYANC-GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           I +    ++H+ S LI +Y+ C G M   + +F+++   +LV+   M+SG+S        
Sbjct: 270 IKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFS-------- 321

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
             +++ + E  L C                    F EMQ  G +PD  + + V SAC++L
Sbjct: 322 --LYEDLSEDGLWC--------------------FREMQRNGFRPDDCSFVCVTSACSNL 359

Query: 364 GVLDQAQRIH-LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSM 422
                 +++H L I  +     + VNNA++ MY+KCG++  AR VF+ M   N +S  SM
Sbjct: 360 SSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSM 419

Query: 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN 482
           I  +A HG    +L  F  M ++ I PN +TFI VL AC H G V+EG++ F  M   + 
Sbjct: 420 IAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFC 479

Query: 483 IPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542
           I P+ EHY CM+DL GRA  L+EA  ++ETMPF P  + W +L+ ACR HG +ELA  AA
Sbjct: 480 IEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAA 539

Query: 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEF 602
            + L+L+P +    V+LSN+YA   RW++   +++ M+ERG+ K+  CS IE++ +V+ F
Sbjct: 540 NEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVF 599

Query: 603 LTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV---DLEDEEKREVILWHSEKLA 659
           +  D SH    +I+  + +++ ++K AGYVPDI  ALV   ++E +E+   +L+HSEKLA
Sbjct: 600 VAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSEKLA 659

Query: 660 LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           + +GLIS+++   I +VKNLR+C DCHN +KL+S +  REI +RD  RFH +K+G CSC+
Sbjct: 660 VAFGLISTEEGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHCSCR 719

Query: 720 DYW 722
           DYW
Sbjct: 720 DYW 722



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 131/519 (25%), Positives = 247/519 (47%), Gaps = 37/519 (7%)

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           +F  +LKA      L+ G  +H L  K       ++      +Y  CG + +A+  F   
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238
            Y ++  ++ +I+ Y ++ L      +F+E+     +PD +  + +++A +  G      
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIP----QPDIVSYNTLIAAYADRGECGPTL 126

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV--------VSTAM 290
            + E + +  + LD    S +IT      C D   GL  ++    +V        V+ A+
Sbjct: 127 RLFEEVRELRLGLDGFTLSGVIT-----ACGDDV-GLVRQLHCFVVVCGHDCYASVNNAV 180

Query: 291 VSGYSRAGQVEDARLIFDQMVE---KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           ++ YSR G + +AR +F +M E   +D + W+AMI    ++    EA+ LF EM   G+K
Sbjct: 181 LACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLK 240

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC-GSLESARE 406
            D  TM SV++A   +  L   ++ H  + K+ F G+  V + +ID+Y+KC GS+   R+
Sbjct: 241 VDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRK 300

Query: 407 VFERMRRRNVISWTSMINAFAIHGD-ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
           VFE +   +++ W +MI+ F+++ D + + L  F +M+     P+  +F+ V  ACS+  
Sbjct: 301 VFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLS 360

Query: 466 LVDEGREIFASMTNEYNIP-PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGS 524
               G+++ A +  + ++P  +      +V ++ +   + +A  + +TMP   N V   S
Sbjct: 361 SPSLGKQVHA-LAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP-EHNTVSLNS 418

Query: 525 LMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584
           ++A    HG     E  + +L +L  + D A   ++ I A        G++ +  K   +
Sbjct: 419 MIAGYAQHG----VEVESLRLFELMLEKDIAPNSITFI-AVLSACVHTGKVEEGQKYFNM 473

Query: 585 LKERACSRIEMNNEVY----EFLTADRSHKQTDQIYEKL 619
           +KER C  IE   E Y    + L      K+ ++I E +
Sbjct: 474 MKERFC--IEPEAEHYSCMIDLLGRAGKLKEAERIIETM 510


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/664 (34%), Positives = 362/664 (54%), Gaps = 58/664 (8%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I  +    R + A++V   M+  G+  D  +F   L A +R E L  G +VH    K
Sbjct: 229 NTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLK 288

Query: 146 LG-FGSDPFVQTGLVGMYGACGKILDARLMFDKMSY--RDIVPWSVMIDGYFQNGLFDE- 201
                ++ FV + LV MY +  ++  AR +FD +    R +  W+ MI GY Q+G  DE 
Sbjct: 289 DDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEE 348

Query: 202 VLNLFEEMKM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260
            + LF  M+  +   P E  ++ +L AC+R+   +  EAVH +++  ++A +  +Q+ L+
Sbjct: 349 AIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALM 408

Query: 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
            MYA                               R G++++A  IF  +  +D++ W+ 
Sbjct: 409 DMYA-------------------------------RLGRMDEAHTIFAMIDLRDIVSWNT 437

Query: 321 MISGYAENNHPQEALKLFNEMQ------------------VCGMK--PDKVTMLSVISAC 360
           +I+G        EA +L  EMQ                  V G +  P+ +T+++++  C
Sbjct: 438 LITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGC 497

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           A L    + + IH Y  ++A   DL V +A++DMYAKCG L  AR VF+R+ RRNVI+W 
Sbjct: 498 AVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWN 557

Query: 421 SMINAFAIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
            +I A+ +HG    AL  F++M  +    PN VTFI  L ACSH+GLVD G E+F  M  
Sbjct: 558 VLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKR 617

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACRVHGEIELA 538
           +Y   P    + C+VD+ GRA  L EA  ++ +M P    V  W +++ ACR+H  ++L 
Sbjct: 618 DYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLG 677

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
             AA++L +L+PD     VLL NIY+    W++  E+R  M++RG+ KE  CS IE++  
Sbjct: 678 RIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGA 737

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           ++ F+  + +H ++ Q++  ++ +   ++  GYVPD    L D+++ EK  ++ +HSEKL
Sbjct: 738 IHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEKL 797

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+ +GL+ +   + IR+ KNLRVC DCH   K +S++  REIV+RD  RFHH++DG CSC
Sbjct: 798 AIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCSC 857

Query: 719 KDYW 722
            DYW
Sbjct: 858 GDYW 861



 Score =  162 bits (410), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 129/479 (26%), Positives = 205/479 (42%), Gaps = 64/479 (13%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARA--EGLLEGMQVHGLG 143
           N  I A+    R  HAL     ML +   +  F+   +L A +    +G   G + H   
Sbjct: 122 NSLISALCLFRRWGHALDALRDMLADH-EVSSFTLVSVLLACSHLADQGHRLGREAHAFA 180

Query: 144 TKLGF---GSDPFVQTGLVGMYGACGKILDARLMF--DKMSYRDIVPWSVMIDGYFQNGL 198
            K GF   G + F    L+ MY   G + DA+ +F        D+V W+ MI    Q G 
Sbjct: 181 LKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGR 240

Query: 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQST 258
            +E + +  +M    V PD +  +  L ACSR   L  G  VH F+              
Sbjct: 241 CEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFV-------------- 286

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE--KDLI 316
                           L D  L  N  V++A+V  Y+   QV  AR +FD + E  + L 
Sbjct: 287 ----------------LKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLG 330

Query: 317 CWSAMISGYAENNH-PQEALKLFNEMQV-CGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
            W+AMI GYA++    +EA++LF+ M+   G  P + TM  V+ ACA   V    + +H 
Sbjct: 331 MWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHG 390

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           Y+ K     +  V NA++DMYA+ G ++ A  +F  +  R+++SW ++I    + G    
Sbjct: 391 YVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISE 450

Query: 435 ALIFFNKMK---------------DESID-----PNGVTFIGVLYACSHAGLVDEGREIF 474
           A     +M+               D S+D     PN +T + +L  C+       G+EI 
Sbjct: 451 AFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIH 510

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
                 + +         +VD++ +   L  A  + + +P   NV+ W  L+ A  +HG
Sbjct: 511 GYAV-RHALESDLAVGSALVDMYAKCGCLALARAVFDRLP-RRNVITWNVLIMAYGMHG 567



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 109/501 (21%), Positives = 222/501 (44%), Gaps = 69/501 (13%)

Query: 8   TKPLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP 64
            +P  +  ++A+ +CS L  +   ++ HA +LK      + NS +   L+  ++    + 
Sbjct: 256 VRPDGVTFASALPACSRLELLGVGREVHAFVLK--DDDLAANSFVASALVDMYA----SN 309

Query: 65  SSLYYALSIFSQIPAPPSRVS--NKFIRAISW-SHRPKHALKVFLKMLNE-GLTIDRFSF 120
             + +A  +F  +P    ++   N  I   +      + A+++F +M  E G      + 
Sbjct: 310 EQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTM 369

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
             +L A AR+E       VHG   K    S+ FVQ  L+ MY   G++ +A  +F  +  
Sbjct: 370 AGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDL 429

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE--------------------PDEMV 220
           RDIV W+ +I G    GL  E   L  EM++ +                      P+ + 
Sbjct: 430 RDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNIT 489

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           L  +L  C+     + G+ +H + + + +  D  + S L+ MYA CGC+ +A+ +FD++ 
Sbjct: 490 LMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLP 549

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            +N++    ++  Y   G  ++A  +FD+MV           +G A              
Sbjct: 550 RRNVITWNVLIMAYGMHGLGDEALALFDRMVA----------NGEA-------------- 585

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIIDMYAKCG 399
                  P++VT ++ ++AC+H G++D+   +   + ++  F     ++  ++D+  + G
Sbjct: 586 ------TPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAG 639

Query: 400 SLESAREVFERMR--RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT-FIG 456
            L+ A  +   M      V +W++M+ A  +H + +   I   ++ +  ++P+  + ++ 
Sbjct: 640 RLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFE--LEPDEASHYVL 697

Query: 457 VLYACSHAGLVDEGREIFASM 477
           +    S AGL +   E+   M
Sbjct: 698 LCNIYSAAGLWENSTEVRGMM 718



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 128/520 (24%), Positives = 220/520 (42%), Gaps = 61/520 (11%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIA 128
           A ++    P PP+  S   IR+++ +     AL+    +     +  D F+ PP +K+ A
Sbjct: 3   AATVIPPAPQPPTSSS---IRSLTAAGHHAAALRALSSLAASPSSALDHFALPPAIKSAA 59

Query: 129 RAEGLLEGMQVHG--LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM--SYRDIV 184
                     +HG  L   L     P V   L+  Y  CG +  A  +F       RD V
Sbjct: 60  ALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALALFAATPPDLRDAV 119

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY--GEAVHE 242
            ++ +I        +   L+   +M +++ E     L  +L ACS   +  +  G   H 
Sbjct: 120 SYNSLISALCLFRRWGHALDALRDM-LADHEVSSFTLVSVLLACSHLADQGHRLGREAHA 178

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           F + +                          G  DK   +      A++S Y+R G V+D
Sbjct: 179 FALKH--------------------------GFLDKG--RERFPFNALLSMYARLGLVDD 210

Query: 303 A-RLIFDQMVE-KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
           A RL F       DL+ W+ MIS   +    +EA+++  +M   G++PD VT  S + AC
Sbjct: 211 AQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPAC 270

Query: 361 AHLGVLDQAQRIHLYIDK-NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVI 417
           + L +L   + +H ++ K +    +  V +A++DMYA    +  AR VF+ +    R + 
Sbjct: 271 SRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLG 330

Query: 418 SWTSMINAFAIHGDA-RNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFA 475
            W +MI  +A HG     A+  F++M+ E+   P+  T  GVL AC+ +  V  G+E   
Sbjct: 331 MWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSE-VFTGKEAVH 389

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG-- 533
               + ++         ++D++ R   + EA  +   +    ++V W +L+  C V G  
Sbjct: 390 GYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLR-DIVSWNTLITGCIVQGLI 448

Query: 534 --------EIELAEFAAKQLLQLDPDH---DGALVLLSNI 562
                   E++L   AA     L+ D    DG   + +NI
Sbjct: 449 SEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNI 488


>gi|302795736|ref|XP_002979631.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
 gi|300152879|gb|EFJ19520.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
          Length = 879

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/641 (36%), Positives = 359/641 (56%), Gaps = 33/641 (5%)

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
           ++   I   +   R   AL++F  ML EG+ +DR +   +L A +   GL EG  +HG  
Sbjct: 270 LATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRMIHGFM 329

Query: 144 TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
            ++ F         L+ MYG CG + +A  +F  M +RD++ W+ +I  + Q+    E L
Sbjct: 330 REIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEAL 389

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
           +L   M++  V+ D++     L  C+ +  L+ G  +H +I+++ +  D  L + ++ MY
Sbjct: 390 HLLHLMQLDGVKADKISFVNALPLCAASEALAKGRMIHSWIVESGIKADVMLDNAILDMY 449

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
            +C   D                               DA  +F  M  +D + W+AMI+
Sbjct: 450 GSCKSTD-------------------------------DASRVFRAMKARDQVSWNAMIT 478

Query: 324 GYAENNH-PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
            YA       EAL LF +MQ+ G  PD ++ ++ +SACA    L + + +H  I +    
Sbjct: 479 AYAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDRIRETGLE 538

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            ++ V NA+++MYAK GSL  AR++F +M   +VISW  MI+AFA HG A   L FF +M
Sbjct: 539 SNMTVANAVLNMYAKSGSLVLARKMFGKMPLPDVISWNGMISAFAQHGHADQVLRFFRRM 598

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY-NIPPKYEHYGCMVDLFGRAN 501
             E   PN VTF+ V+ ACSH GLV +G ++F S+ +++  I P+ EHY CMVDL  RA 
Sbjct: 599 NHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIARAG 658

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSN 561
            L  A + +   P  P+ VI  +++ A +VH ++E A  +A+ L++L PD   A V+LSN
Sbjct: 659 KLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRSAAYVVLSN 718

Query: 562 IYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNE 621
           +Y +  +  +  ++R+ M E+ I KE A S I +   V+EF T D ++ +T +I E+L  
Sbjct: 719 LYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTNARTPEILEELER 778

Query: 622 VISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRV 681
           +  E+  AGY PD    L D+ DE+K+ ++ +HSEKLA+ +GLIS+   + +RI+KNLRV
Sbjct: 779 LSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFGLISTAPGTSLRIIKNLRV 838

Query: 682 CEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           C DCH   K +SK+  REIV+RD  RFHH+ +G CSC DYW
Sbjct: 839 CGDCHTATKFISKITGREIVVRDSHRFHHFDNGTCSCGDYW 879



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/519 (26%), Positives = 241/519 (46%), Gaps = 56/519 (10%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           ++   SL   K+ HA+I K   S   +   +  LL+  +        SL  A + F ++P
Sbjct: 8   VADSRSLDLGKEVHARICK---SAMDRGPFMGDLLVRMY----VDCGSLIDAKACFDRMP 60

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI-ARAEGLLEGM 137
              +    + IRA       + AL +F  M  EG+     +F  +L A  A  E L EG 
Sbjct: 61  VQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGR 120

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           ++HG+       SD +V T L+ MYG C  + DAR +FD + ++ +V W+ MI  Y Q  
Sbjct: 121 RIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQD 180

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV--------HEFIIDNNV 249
             ++ + +F  M +  V+ + +    +L ACS+  +L   + V        H+ + D++ 
Sbjct: 181 HHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSF 240

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
           A      + L+  Y +CG ++ A   F +  L                            
Sbjct: 241 A------TALVNFYGSCGDLEQAFRAFSRHRL---------------------------- 266

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
               +LI  +AMI+ Y +     EAL+LF  M + G+K D++  ++V++AC+    L++ 
Sbjct: 267 ----ELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEG 322

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + IH ++ +  F   +   NA+I+MY KCGSLE A EVF  M+ R+VISW ++I A   H
Sbjct: 323 RMIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQH 382

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
                AL   + M+ + +  + ++F+  L  C+ +  + +GR I + +  E  I      
Sbjct: 383 SQHPEALHLLHLMQLDGVKADKISFVNALPLCAASEALAKGRMIHSWIV-ESGIKADVML 441

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
              ++D++G      +A  +   M  A + V W +++ A
Sbjct: 442 DNAILDMYGSCKSTDDASRVFRAMK-ARDQVSWNAMITA 479



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 195/418 (46%), Gaps = 40/418 (9%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +  +L  +A +  L  G +VH    K      PF+   LV MY  CG ++DA+  FD+M 
Sbjct: 1   YADLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMP 60

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN-LSYGE 238
            +D + W+ +I  + Q G  ++ L+LF  M++  V P       +L ACS     L  G 
Sbjct: 61  VQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGR 120

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
            +H  +    +  D ++ +TL+ MY  C  ++ A+ +FD +  K +V   AM+       
Sbjct: 121 RIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMI------- 173

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
                                   + YA+ +H ++A+++F  M + G+K +++T + V+ 
Sbjct: 174 ------------------------TAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLD 209

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           AC+ L  L+ A+ + L +++       D     A+++ Y  CG LE A   F R R   +
Sbjct: 210 ACSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAFSRHRLELI 269

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           ++ T+MI  +        AL  F  M  E +  + +  + VL ACS    ++EGR I   
Sbjct: 270 LA-TAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRMIHGF 328

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
           M  E            +++++G+   L EA+E+  +M    +V+ W +++AA   HG+
Sbjct: 329 M-REIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQH-RDVISWNTIIAA---HGQ 381


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/531 (39%), Positives = 320/531 (60%), Gaps = 31/531 (5%)

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
           R +F+ M  RDIV W+ +I G  QNG+ ++ L +  EM  +++ PD   LS +L   +  
Sbjct: 150 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 209

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
            NL  G+ +H + I N    D  + S+LI MYA C                         
Sbjct: 210 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCT------------------------ 245

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
                  +V+D+  +F  + + D I W+++I+G  +N    E LK F +M +  +KP+ V
Sbjct: 246 -------RVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHV 298

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           +  S++ ACAHL  L   +++H YI ++ F G++ + +A++DMYAKCG++ +AR +F++M
Sbjct: 299 SFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKM 358

Query: 412 RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471
              +++SWT+MI  +A+HG A +A+  F +M+ E + PN V F+ VL ACSHAGLVDE  
Sbjct: 359 ELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAW 418

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV 531
           + F SMT +Y I P  EHY  + DL GR   L EA E +  M   P   +W +L+AACRV
Sbjct: 419 KYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRV 478

Query: 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACS 591
           H  IELAE  +K+L  +DP + GA VLLSNIY+   RW+D  +LR +M+++G+ K+ ACS
Sbjct: 479 HKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACS 538

Query: 592 RIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVI 651
            IE+ N+V+ F+  D+SH   D+I E L  ++ +++  GYV D    L D+E+E+KR ++
Sbjct: 539 WIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLL 598

Query: 652 LWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVI 702
             HSE+LA+ +G+IS+   + IR+ KNLRVC DCH   K +SK+  REIV 
Sbjct: 599 CSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVF 649



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 200/416 (48%), Gaps = 46/416 (11%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F  +P       N  I   + +   + AL +  +M N  L  D F+   +L   A    
Sbjct: 152 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVN 211

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           LL+G ++HG   + G+ +D F+ + L+ MY  C ++ D+  +F  +   D + W+ +I G
Sbjct: 212 LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAG 271

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
             QNG+FDE L  F++M ++ ++P+ +  S I+ AC+    L  G+ +H +II +    +
Sbjct: 272 CVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGN 331

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
             + S L+ MYA CG +  A+ +FDK+ L ++V  TAM+ GY+  G              
Sbjct: 332 VFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHG-------------- 377

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
                            H  +A+ LF  M+V G+KP+ V  ++V++AC+H G++D+A + 
Sbjct: 378 -----------------HAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKY 420

Query: 373 HLYIDKNAFGGDLRV------NNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINA 425
                 N+   D R+        A+ D+  + G LE A E    M      S W++++ A
Sbjct: 421 F-----NSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAA 475

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREIFASMTNE 480
             +H +   A     K+   ++DP  +  ++ +    S AG   + R++  +M ++
Sbjct: 476 CRVHKNIELAEKVSKKLF--TVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDK 529



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 136/580 (23%), Positives = 243/580 (41%), Gaps = 89/580 (15%)

Query: 108 MLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167
           ML  G   D   FP +LK+    + L  G  VHG   +LG G D +    L+ MY     
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKF-- 58

Query: 168 ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227
                             WS+   G          +  F + KM    P+   + K    
Sbjct: 59  ------------------WSLEEGG----------VQRFCDSKMLGGIPEPREIGK---- 86

Query: 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           CS + +L          ID N  L+   Q + I    N       K +FD+    ++   
Sbjct: 87  CSNSHDLPCELDERVAGIDQNGDLN---QMSNILYQVNT-----YKKVFDEGKTSDVYSK 138

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
               S Y     +   R +F+ M ++D++ W+ +ISG A+N   ++AL +  EM    ++
Sbjct: 139 KEKESYY-----LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLR 193

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           PD  T+ SV+   A    L + + IH Y  +N +  D+ + +++IDMYAKC  ++ +  V
Sbjct: 194 PDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRV 253

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F  + + + ISW S+I     +G     L FF +M    I PN V+F  ++ AC+H   +
Sbjct: 254 FYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTL 313

Query: 468 DEGREIFASMTNEYNIPPKYEH----YGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
             G+++       Y I  +++        +VD++ +   +R A  + + M    ++V W 
Sbjct: 314 HLGKQLHG-----YIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELY-DMVSWT 367

Query: 524 SLMAACRVHGEI--ELAEFAAKQLLQLDPDHDGALVLL---SNIYAKDKRWQDVGELRKS 578
           +++    +HG     ++ F   ++  + P++   + +L   S+    D+ W+    + + 
Sbjct: 368 AMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQD 427

Query: 579 MKERGILKERAC-----SRIEMNNEVYEF----------------LTADRSHKQTDQIYE 617
            +    L+  A       R+    E YEF                L A R HK   ++ E
Sbjct: 428 YRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNI-ELAE 486

Query: 618 KLNEVISELKP---AGYV--PDIHSALVDLEDEEKREVIL 652
           K+++ +  + P     YV   +I+SA    +D  K  + +
Sbjct: 487 KVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAM 526


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/691 (33%), Positives = 367/691 (53%), Gaps = 38/691 (5%)

Query: 32  HAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRA 91
           HA   KL H    +N+ +   L+ ++SL      ++ +A  +F  I    +      +  
Sbjct: 173 HACACKLGHD---RNAFVGSSLIDAYSLC----GAVSHARCVFDGIIWKDAVTWTAMVSC 225

Query: 92  ISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSD 151
            S +  P+ AL  F KM   G   + F    +LKA       + G  +HG   K    ++
Sbjct: 226 YSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTE 285

Query: 152 PFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
           P V   L+ MY  CG I DAR +F+ + + D++ WS +I  Y Q+   ++   +F  M  
Sbjct: 286 PHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMR 345

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
           S+V P+E  LS +L AC+    L  G+ +H  +I      +  + + L+ +YA C  M  
Sbjct: 346 SSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNM-- 403

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
                                        E++  IF  + + + + W+ +I GY ++   
Sbjct: 404 -----------------------------ENSLEIFRSLRDANEVSWNTIIVGYCQSGFA 434

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           ++AL +F EM+   +   +VT  SV+ ACA+   +    +IH  I+K+ F  D  V N++
Sbjct: 435 EDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSL 494

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           ID YAKCG +  A +VFE + + +V+SW ++I+ +A+HG A +AL  FN+M      PN 
Sbjct: 495 IDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPND 554

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
           VTF+ +L  C   GLV++G  +F SMT ++ I P  +HY C+V L GRA  L +AL+ + 
Sbjct: 555 VTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIG 614

Query: 512 TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
            +P  P+ ++W +L+++C VH  + L +F+A+++L+++P  +   VLLSN+YA       
Sbjct: 615 DIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQ 674

Query: 572 VGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY 631
           V  LRKSM+  G+ KE   S +E+  EV+ F      H     I   L  +  +    GY
Sbjct: 675 VALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGY 734

Query: 632 VPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKL 691
           VPDI+  L D+++EEK  ++  HSE+LAL YGL  +     IRI+KNLR C DCH   K+
Sbjct: 735 VPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLDCHTVFKV 794

Query: 692 VSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +SK+  REIV+RD  RFHH+ +G+CSC DYW
Sbjct: 795 ISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 116/436 (26%), Positives = 216/436 (49%), Gaps = 33/436 (7%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + A  +F ++  EG  ++ F    ILK +   +       +H    KLG   + FV + L
Sbjct: 132 EEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSL 191

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           +  Y  CG +  AR +FD + ++D V W+ M+  Y +N + ++ LN F +M+M+  +P+ 
Sbjct: 192 IDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNP 251

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
            VL+ +L A     +   G+ +H   +      + H+   L+ MYA CG           
Sbjct: 252 FVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCG----------- 300

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
                                +EDAR +F+ +   D+I WS +IS YA++   ++A ++F
Sbjct: 301 --------------------YIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMF 340

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
             M    + P++ ++  V+ ACA++  LD  Q+IH  + K  +  +L V NA++D+YAKC
Sbjct: 341 LRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKC 400

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
            ++E++ E+F  +R  N +SW ++I  +   G A +AL  F +M+   +    VTF  VL
Sbjct: 401 RNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVL 460

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            AC++   +    +I  S+  +            ++D + +   +R+AL++ E++    +
Sbjct: 461 RACANTASIKHTVQIH-SLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESI-IQCD 518

Query: 519 VVIWGSLMAACRVHGE 534
           VV W ++++   +HG 
Sbjct: 519 VVSWNAIISGYALHGR 534



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 144/317 (45%), Gaps = 43/317 (13%)

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNN--VALDAHLQSTLITMYANCGCMDMAKG 274
           D    +++L  C   G+   G AVH  ++       LD    + L+ +YA  G +  A+ 
Sbjct: 46  DSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARR 105

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNH--PQ 332
           LFD +  +N+V    +V GY+  G  E+A  +F ++  +          G+ E NH    
Sbjct: 106 LFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQRE----------GH-EVNHFVLT 154

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392
             LK+   M   G+          I ACA            L  D+NAF     V +++I
Sbjct: 155 TILKVLVAMDAPGLT-------CCIHACA----------CKLGHDRNAF-----VGSSLI 192

Query: 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
           D Y+ CG++  AR VF+ +  ++ ++WT+M++ ++ +    +AL  F+KM+     PN  
Sbjct: 193 DAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPF 252

Query: 453 TFIGVLYA--CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
               VL A  C  + ++ +G    A  T     P      G ++D++ +   + +A  + 
Sbjct: 253 VLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEP---HVGGALLDMYAKCGYIEDARTVF 309

Query: 511 ETMPFAPNVVIWGSLMA 527
           E +P   +V++W  L++
Sbjct: 310 EIIPH-DDVILWSFLIS 325


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/557 (38%), Positives = 320/557 (57%), Gaps = 31/557 (5%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           G +  A  +F    + ++  W+ +I GY  +      + L+++M +  + P+      +L
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
           +AC +   L  G+ +H  I+   +  +  L + LI +YA CGCMD A  +FD++   +  
Sbjct: 75  NACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSA 134

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
             + MVSGYS+ GQ                                 E LKL  EMQ   
Sbjct: 135 SWSTMVSGYSQNGQA-------------------------------VETLKLLREMQAEN 163

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405
           +  D  T+ SV+  C  LGVLD  + +H YIDK     D+ +  A++ MY+KCGSL++A 
Sbjct: 164 VSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNAL 223

Query: 406 EVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465
           +VF+ M  R+V +W+ MI  +AIHG    AL  F+ MK   I PN VTF  VL A SH+G
Sbjct: 224 KVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSG 283

Query: 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525
           LV++G +IF +M  EY I P+ +HYGCMVDLF RA ++  A + ++TMP  PNVV+W +L
Sbjct: 284 LVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTL 343

Query: 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585
           + AC+ HG   L E  ++++L+LDP      V +SN+YA   RW  V ++R  MKE+   
Sbjct: 344 LGACKTHGYKGLGEHISRKILKLDPSSPENYVFVSNVYASLGRWSSVCQVRSLMKEKAPK 403

Query: 586 KERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDE 645
           K+   S IE+N  V++F+  + SH + ++IY  L+++  +LK  G+V      L D+++E
Sbjct: 404 KQHGWSSIEINFMVHKFIMGEESHPKREKIYGMLHQMARKLKQVGHVASTVDVLHDIDEE 463

Query: 646 EKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDR 705
           EK   +  HSE+LA+ YGL+ +   S IRIVKNLR C DCH  IKL+S+VY REI++RDR
Sbjct: 464 EKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRACRDCHEVIKLISEVYNREIILRDR 523

Query: 706 TRFHHYKDGVCSCKDYW 722
             FHH+++  CSC DYW
Sbjct: 524 VCFHHFRERGCSCNDYW 540



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 181/407 (44%), Gaps = 37/407 (9%)

Query: 60  PTTTPSS---LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTID 116
           P   PS    + YA  IFS    P   + N  IR  S S  P  A+ ++  M   G++ +
Sbjct: 7   PQGHPSPHGHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPN 66

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
            ++F  +L A  +   L EG ++H    K G   +  +  GL+ +Y ACG +  A +MFD
Sbjct: 67  SYTFGFVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFD 126

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
           +M   D   WS M+ GY QNG   E L L  EM+  NV  D   L+ ++  C   G L  
Sbjct: 127 EMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDL 186

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G+ VH +I    V +D  L + L+ MY+ CG +D A  +F  +  +++   + M++GY+ 
Sbjct: 187 GKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAI 246

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
            G  E A  +FD M    +I                               P+ VT  SV
Sbjct: 247 HGHDEKALQLFDAMKRSKII-------------------------------PNCVTFTSV 275

Query: 357 ISACAHLGVLDQAQRI-HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RR 414
           +SA +H G++++  +I      +      ++    ++D++ + G +  A +  + M    
Sbjct: 276 LSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEP 335

Query: 415 NVISWTSMINAFAIHG-DARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           NV+ W +++ A   HG       I    +K +   P    F+  +YA
Sbjct: 336 NVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPENYVFVSNVYA 382


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/627 (35%), Positives = 349/627 (55%), Gaps = 73/627 (11%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV 84
           +  +KQ  A I+     + S   L ++ LL +        S + YA  +F QIP P   V
Sbjct: 15  INQLKQIQALIII---KYLSLTPLFIRRLLNA--------SFIQYARQVFDQIPHPDQGV 63

Query: 85  SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
              FI A S       AL+ F+ M    + I  F+ PPI K+ A    +  G QVH L  
Sbjct: 64  HCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVI 123

Query: 145 KLGFGSDPFVQTGLVGMYGA-------------------------------CGKILDARL 173
           + GF S  F Q  L+  Y                                  G++L AR 
Sbjct: 124 RYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARE 183

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +FDKM  R IV W+ MI  Y QNG + +   +F+ M+    EP+E+ L+ +LS C++ G+
Sbjct: 184 LFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGD 243

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           L  G  + +   + N+                                 N++VSTAM+  
Sbjct: 244 LEMGLRIKKLNDNKNLG-------------------------------SNMIVSTAMLEM 272

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           Y + G V+D RL+FD M  +D++ WSAMI+GYA+N    EAL+LF  M+   +KP+ VT+
Sbjct: 273 YVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTL 332

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
           +SV+SACA LG ++  +RI  Y++      ++ V +A++ MY+KCG++  AR++F+++ +
Sbjct: 333 VSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQ 392

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           R+ ++W SMI   AI+G A +A+  +N+MK+  + PN +TF+G++ AC+HAG V+ G E 
Sbjct: 393 RDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEF 452

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           F SM +++NI P  EH+ C+VDLF R+  L +A E +  M   PNVVIWG+L++A R+H 
Sbjct: 453 FRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHL 512

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
            +ELAE A K+LL+L+PD+ G  V+LSNIYA   RWQ+  ++RK MK++ + K  A S +
Sbjct: 513 NVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQKAAAYSWV 572

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLN 620
           E+ + V++FL  D SH ++D++Y  ++
Sbjct: 573 EVEDRVHKFLVGDTSHPRSDEVYSTID 599


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/564 (38%), Positives = 329/564 (58%), Gaps = 37/564 (6%)

Query: 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221
           Y  CG +  A  +F  +  + +  W+ +I G+ QNG   + L+L  +M  S  +PD   +
Sbjct: 395 YAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTI 454

Query: 222 SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281
           S +L AC+   +L YG+ +H +++ N +  D  + ++L++ Y +C               
Sbjct: 455 SSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHC--------------- 499

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM 341
                           G+   AR++FD+M +K+L+ W+AMISGY++N  P E+L LF + 
Sbjct: 500 ----------------GKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKS 543

Query: 342 QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
              G++  ++ ++SV  AC+ L  L   +  H Y+ K     D  V  +IIDMYAK G +
Sbjct: 544 LSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCI 603

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
           + +R+VF+ ++ +NV SW ++I A  IHG  + A+  + +MK     P+  T+IG+L AC
Sbjct: 604 KESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMAC 663

Query: 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI 521
            HAGLV+EG + F  M N   I PK EHY C++D+  RA  L +AL LV  MP   +  I
Sbjct: 664 GHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRI 723

Query: 522 WGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581
           W SL+ +CR  G +E+ E  AK+LL+L+PD     VLLSN+YA   +W  V  +R+ MKE
Sbjct: 724 WSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKE 783

Query: 582 RGILKERACSRIEMNNEVYEFLTADRSHKQTDQI---YEKLNEVISELKPAGYVPDIHSA 638
            G+ K+  CS IE+   VY F+  D    ++ +I   + +L E ISE+   GY P+  S 
Sbjct: 784 IGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERISEI---GYKPNTSSV 840

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
           L ++ +EEK +++  HSEKLA+ +GL+ + K + +RI KNLR+C DCHN  KL+SK   R
Sbjct: 841 LHEVGEEEKIDILRGHSEKLAISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISKAVER 900

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
           EIV+RD  RFHH++DG+CSC DYW
Sbjct: 901 EIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/479 (26%), Positives = 231/479 (48%), Gaps = 45/479 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPILKAIA 128
           A+ +F  +P       N  I A S +   + +  + ++ML E GL  D  +   IL   A
Sbjct: 200 AMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCA 259

Query: 129 RAEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
             EG ++ GM +HGL  KLG   +  V   +V MY  CG + +A++ F K + +++V W+
Sbjct: 260 -GEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWN 318

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVE--PDEMVLSKILSACSRAGNLSYGEAVHEFII 245
            MI  +   G  +E  NL +EM++   E   +E+ +  +L AC     L   + +H +  
Sbjct: 319 TMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGY-- 376

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
                            + +C               +++ +S A +  Y++ G +  A  
Sbjct: 377 ----------------SFRHC--------------FQHVELSNAFILAYAKCGALNSAEK 406

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +F  + +K +  W+A+I G+A+N  P++AL L  +M   G +PD  T+ S++ ACAHL  
Sbjct: 407 VFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKS 466

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L   + IH Y+ +N    D  V  +++  Y  CG   SAR +F+RM+ +N++SW +MI+ 
Sbjct: 467 LQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISG 526

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
           ++ +G    +L  F K   E I  + +  + V  ACS    +  G+E    +        
Sbjct: 527 YSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTED 586

Query: 486 KYEHYGC-MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE----IELAE 539
            +   GC ++D++ ++  ++E+ ++ + +    NV  W +++ A  +HG     IEL E
Sbjct: 587 AF--VGCSIIDMYAKSGCIKESRKVFDGLK-DKNVASWNAIIVAHGIHGHGKEAIELYE 642



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 176/344 (51%), Gaps = 36/344 (10%)

Query: 123 ILKAIARAEGLLEGMQVHG-LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
           +L+A    + +  G ++H  +     + +D  + T L+ MY  CG  LD+RL+FD M  +
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           +++ W+ ++ GY +NGL+ +V+ +F ++   ++ +PD      ++ AC    ++  GE +
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVI 168

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H  +I   + LD                               + V  A+V  Y + G V
Sbjct: 169 HGMVIKMGLVLD-------------------------------VFVGNALVGMYGKCGAV 197

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISA 359
           ++A  +FD M E +L+ W++MI  ++EN   +++  L  EM    G+ PD VT+++++  
Sbjct: 198 DEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPV 257

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           CA  G +D    IH    K     ++ VNNA++ MY+KCG L  A+  F +   +NV+SW
Sbjct: 258 CAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSW 317

Query: 420 TSMINAFAIHGDARNALIFFNKM--KDESIDPNGVTFIGVLYAC 461
            +MI+AF++ GD   A     +M  + E +  N VT + VL AC
Sbjct: 318 NTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC 361



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 183/376 (48%), Gaps = 36/376 (9%)

Query: 102 LKVFLKMLNE-GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           +KVF+ ++++     D F+FP ++KA      +  G  +HG+  K+G   D FV   LVG
Sbjct: 130 VKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVG 189

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEM 219
           MYG CG + +A  +FD M   ++V W+ MI  + +NG   +  +L  EM     + PD +
Sbjct: 190 MYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVV 249

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
            +  IL  C+  G +  G  +H   +   ++ +  + + ++ MY+ CG ++ A+  F K 
Sbjct: 250 TVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKN 309

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
             KN+V    M+S +S  G V                                EA  L  
Sbjct: 310 NNKNVVSWNTMISAFSLEGDV-------------------------------NEAFNLLQ 338

Query: 340 EMQVCG--MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           EMQ+ G  MK ++VT+L+V+ AC     L   + +H Y  ++ F   + ++NA I  YAK
Sbjct: 339 EMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCF-QHVELSNAFILAYAK 397

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CG+L SA +VF  +  + V SW ++I   A +GD R AL    +M      P+  T   +
Sbjct: 398 CGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSL 457

Query: 458 LYACSHAGLVDEGREI 473
           L AC+H   +  G+EI
Sbjct: 458 LLACAHLKSLQYGKEI 473



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 175/380 (46%), Gaps = 33/380 (8%)

Query: 53  LLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG 112
           L  +F L      +L  A  +F  I        N  I   + +  P+ AL +  +M   G
Sbjct: 387 LSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSG 446

Query: 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR 172
              D F+   +L A A  + L  G ++HG   + G  +D FV T L+  Y  CGK   AR
Sbjct: 447 QQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSAR 506

Query: 173 LMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232
           ++FD+M  +++V W+ MI GY QNGL  E L LF +     ++  E+ +  +  ACS+  
Sbjct: 507 VLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLS 566

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
            L  G+  H +++      DA +  ++I MYA  GC                        
Sbjct: 567 ALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGC------------------------ 602

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
                  ++++R +FD + +K++  W+A+I  +  + H +EA++L+  M+  G  PD+ T
Sbjct: 603 -------IKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFT 655

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDK-NAFGGDLRVNNAIIDMYAKCGSLESA-REVFER 410
            + ++ AC H G++++  +    +   N     L     +IDM A+ G L+ A R V E 
Sbjct: 656 YIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEM 715

Query: 411 MRRRNVISWTSMINAFAIHG 430
               +   W+S++ +    G
Sbjct: 716 PEEADNRIWSSLLRSCRTFG 735



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 164/336 (48%), Gaps = 47/336 (13%)

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           +L AC    ++  G  +H+F+ D+             T Y N                 +
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDS-------------THYRN-----------------D 78

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM-Q 342
            V++T ++  Y+  G   D+RL+FD M  K+LI W+A++SGY  N    + +K+F ++  
Sbjct: 79  YVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVS 138

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQ--AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
               +PD  T  SVI AC   G+LD    + IH  + K     D+ V NA++ MY KCG+
Sbjct: 139 DTDFQPDNFTFPSVIKACG--GILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGA 196

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNAL-IFFNKMKDESIDPNGVTFIGVLY 459
           ++ A +VF+ M   N++SW SMI AF+ +G +R++  +    + +E + P+ VT + +L 
Sbjct: 197 VDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILP 256

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN- 518
            C+  G VD G  I   +  +  +  +      MV ++ +   L EA      M F  N 
Sbjct: 257 VCAGEGEVDIGMGIHG-LAVKLGLSEEVMVNNAMVYMYSKCGYLNEA-----QMSFVKNN 310

Query: 519 ---VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
              VV W ++++A  + G++  A F   Q +Q+  +
Sbjct: 311 NKNVVSWNTMISAFSLEGDVNEA-FNLLQEMQIQGE 345


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/645 (35%), Positives = 345/645 (53%), Gaps = 35/645 (5%)

Query: 81  PSRVSNKFIRAISWSHRPKH---ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
           P+R    +   IS S +  +   AL  F KM  E +  + F+FP   KA         G 
Sbjct: 19  PTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTFPCAFKASTALCLPFAGK 78

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           Q+H +  KLG  +D FV      MY   G   +A+ +FD+M  R++  W+  I     +G
Sbjct: 79  QIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAVLDG 138

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
              + ++ F E +    EPD +     L+AC+ A  L  G  +H  +I +    D  + +
Sbjct: 139 RPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVAN 198

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
            +I +Y  C                                +VE A ++F+ M  ++ + 
Sbjct: 199 GIIDVYGKCK-------------------------------EVELAEMVFNGMGRRNSVS 227

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W  M++   +N+  ++A  +F   +  G++     + SVISA A +  L+  + +H    
Sbjct: 228 WCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAV 287

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           K    GD+ V +A++DMY KCGS+E   +VF  M  RN++SW +MI+ +A  GD   A+ 
Sbjct: 288 KACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMT 347

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F +M+ E++  N VT I VL ACS  G V  G EIF SM + Y I P  EHY C+ D+ 
Sbjct: 348 LFEEMQSEAV-ANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADML 406

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557
           GRA ++  A E V+ MP  P + +WG+L+ ACRV+GE EL + AA  L +LDP   G  V
Sbjct: 407 GRAGMVERAYEFVQKMPIRPTISVWGALLNACRVYGEPELGKIAADNLFKLDPKDSGNHV 466

Query: 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYE 617
           LLSN++A   RW +   +RK MK+ GI K   CS +   N+V+ F   D SH++  +I  
Sbjct: 467 LLSNMFAAAGRWDEATLVRKEMKDVGIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQA 526

Query: 618 KLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVK 677
            L ++ +E++ AGY+PD + AL DLE+EEK   + +HSEK+AL +GLI+      IRI K
Sbjct: 527 MLVKLRTEMQAAGYMPDTNYALYDLEEEEKMTEVGYHSEKIALAFGLIALPPGVPIRITK 586

Query: 678 NLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           NLR+C DCH+  K +S +  REI++RD  RFH ++D  CSC+D+W
Sbjct: 587 NLRICGDCHSAFKFISGIVGREIIVRDNNRFHRFRDSQCSCRDFW 631



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 188/426 (44%), Gaps = 44/426 (10%)

Query: 8   TKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSL 67
           T P     STA+  C      KQ HA  LKL   +         +  ++F + + T    
Sbjct: 60  TFPCAFKASTAL--CLPFAG-KQIHAIALKLGQINDKF------VGCSAFDMYSKTGLK- 109

Query: 68  YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
           + A  +F ++P     V N +I       RP  A+  F++    G   D  +F   L A 
Sbjct: 110 FEAQRLFDEMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNAC 169

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
           A A  L  G Q+HGL  + GF  D  V  G++ +YG C ++  A ++F+ M  R+ V W 
Sbjct: 170 ADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWC 229

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
            M+    QN   ++   +F   +   +E  + ++S ++SA +    L +G +VH   +  
Sbjct: 230 TMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKA 289

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
            V  D  + S L+ MY  CG ++  + +F ++  +NLV   AM+SGY+  G V+ A  +F
Sbjct: 290 CVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLF 349

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
           ++M        S  ++ Y                         VT++ V+SAC+  G + 
Sbjct: 350 EEM-------QSEAVANY-------------------------VTLICVLSACSRGGAVK 377

Query: 368 QAQRIHLYI-DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS-WTSMINA 425
               I   + D+            I DM  + G +E A E  ++M  R  IS W +++NA
Sbjct: 378 LGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWGALLNA 437

Query: 426 FAIHGD 431
             ++G+
Sbjct: 438 CRVYGE 443



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 164/368 (44%), Gaps = 33/368 (8%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           A+L+      R +V W+ +I G  QNG F   L  F +M+  N++P++        A + 
Sbjct: 11  AQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTFPCAFKASTA 70

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
                 G+ +H   +      D  +  +   MY+  G    A+ LFD++  +N+ V    
Sbjct: 71  LCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAV---- 126

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
                                      W+A IS    +  P +A+  F E +  G +PD 
Sbjct: 127 ---------------------------WNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDL 159

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           +T  + ++ACA    LD  +++H  + ++ F GD+ V N IID+Y KC  +E A  VF  
Sbjct: 160 ITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNG 219

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M RRN +SW +M+ A   + +   A + F   + E I+        V+ A +    ++ G
Sbjct: 220 MGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFG 279

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
           R + A +  +  +         +VD++G+   + +  ++   MP   N+V W ++++   
Sbjct: 280 RSVHA-LAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMP-ERNLVSWNAMISGYA 337

Query: 531 VHGEIELA 538
             G++++A
Sbjct: 338 HQGDVDMA 345



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 112/245 (45%), Gaps = 2/245 (0%)

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           YS+      A+L+      + ++ W+A+ISG  +N +   AL  F++M+   +KP+  T 
Sbjct: 2   YSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTF 61

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
                A   L +    ++IH    K     D  V  +  DMY+K G    A+ +F+ M  
Sbjct: 62  PCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPP 121

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           RNV  W + I+   + G    A+  F + +    +P+ +TF   L AC+ A  +D GR++
Sbjct: 122 RNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQL 181

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
              +               ++D++G+   + E  E+V       N V W +++AAC  + 
Sbjct: 182 HG-LVIRSGFEGDVSVANGIIDVYGKCKEV-ELAEMVFNGMGRRNSVSWCTMVAACEQND 239

Query: 534 EIELA 538
           E E A
Sbjct: 240 EKEKA 244



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 4/141 (2%)

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
           MY+K      A+ + +    R V++WT++I+    +G   +AL++F+KM+ E+I PN  T
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFT 60

Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC-MVDLFGRANLLREALELVET 512
           F     A +   L   G++I A       I  K+   GC   D++ +  L  EA  L + 
Sbjct: 61  FPCAFKASTALCLPFAGKQIHAIALKLGQINDKF--VGCSAFDMYSKTGLKFEAQRLFDE 118

Query: 513 MPFAPNVVIWGSLMAACRVHG 533
           MP   NV +W + ++   + G
Sbjct: 119 MP-PRNVAVWNAYISNAVLDG 138


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/624 (36%), Positives = 358/624 (57%), Gaps = 37/624 (5%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
             ++F +M   G+ + R  F   LK  ++   L    Q+H    K G+     ++T L+ 
Sbjct: 290 GFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMV 349

Query: 161 MYGACGKILDARLMFDKM-SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
            Y  C  + +A  +F    +  ++V W+ MI G+ QN   ++ ++LF +M    V P+  
Sbjct: 350 TYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHF 409

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
             S +L     AG  S              +L + L + +I  Y            ++KV
Sbjct: 410 TYSTVL-----AGKPS--------------SLLSQLHAQIIKAY------------YEKV 438

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
                 V+TA++  Y + G V ++  +F  +  KD++ WSAM++G A+    ++A+++F 
Sbjct: 439 P----SVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFI 494

Query: 340 EMQVCGMKPDKVTMLSVISACAH-LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           ++   G+KP++ T  SVI+AC+     ++  ++IH    K+     L V++A++ MY+K 
Sbjct: 495 QLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKK 554

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G++ESA +VF R   R+++SW SMI  +  HGDA+ AL  F  M+++ +  + VTFIGVL
Sbjct: 555 GNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVL 614

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            AC+HAGLV+EG + F  M  +Y+I  K EHY CMVDL+ RA +  +A++++  MPF  +
Sbjct: 615 TACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPAS 674

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
             IW +L+AACRVH  +EL + AA++L+ L P+     VLLSNI+A    W++   +RK 
Sbjct: 675 PTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKL 734

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           M ER + KE  CS IE+ N ++ FL  D SH  +D +Y KL E+  +LK  GY PD +  
Sbjct: 735 MDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYV 794

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
             D+E+E K  ++  HSE+LA+ YGLI+    + I+I KNLR+C DCHN I+L+S +  R
Sbjct: 795 FHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEER 854

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
            +++RD  RFHH+K GVCSC  YW
Sbjct: 855 TLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 121/489 (24%), Positives = 217/489 (44%), Gaps = 39/489 (7%)

Query: 42  HHSQNSLLLKLLLTSFSLP-TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKH 100
           HH ++ L     L   SLP  + PS   YA  +F + P       N+ +   S ++  + 
Sbjct: 28  HHIKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDRE 87

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL +F  + + GL +D  +    LK        + G QVH    K GF  D  V T LV 
Sbjct: 88  ALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVD 147

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY       D R +FD+M  +++V W+ ++ GY +NGL DEV++L  +M+M  V P+   
Sbjct: 148 MYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFT 207

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
            + +L A +    +  G  VH  I+ N       + + LI MY     +  A+ +FD ++
Sbjct: 208 FATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMV 267

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
           +++ V    M+ GY                         A I  Y       E  ++F+ 
Sbjct: 268 VRDSVTWNIMIGGY-------------------------AAIGFYL------EGFQMFHR 296

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M++ G+K  +    + +  C+    L+  +++H  + KN +     +  A++  Y+KC S
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSS 356

Query: 401 LESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           ++ A ++F       NV++WT+MI  F  + +   A+  F +M  E + PN  T+  VL 
Sbjct: 357 VDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLA 416

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
               + L     +I  +    Y   P       ++D + +   + E+  +  ++P A ++
Sbjct: 417 GKPSSLLSQLHAQIIKAY---YEKVPSVA--TALLDAYVKTGNVVESARVFYSIP-AKDI 470

Query: 520 VIWGSLMAA 528
           V W +++  
Sbjct: 471 VAWSAMLTG 479



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 204/451 (45%), Gaps = 47/451 (10%)

Query: 107 KMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACG 166
           +M  EG+  + F+F  +L A+A    +  G+QVH +  K GF    FV   L+ MY    
Sbjct: 195 QMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSE 254

Query: 167 KILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS 226
            + DA  +FD M  RD V W++MI GY   G + E   +F  M+++ V+    V    L 
Sbjct: 255 MVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALK 314

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV-LLKNLV 285
            CS+   L++ + +H  ++ N       +++ L+  Y+ C  +D A  LF       N+V
Sbjct: 315 LCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVV 374

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
             TAM+                                G+ +NN+ ++A+ LF +M   G
Sbjct: 375 TWTAMI-------------------------------GGFVQNNNNEKAVDLFCQMSREG 403

Query: 346 MKPDKVTMLSVISACAHLGVLDQ--AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
           ++P+  T  +V++      +L Q  AQ I  Y +K        V  A++D Y K G++  
Sbjct: 404 VRPNHFTYSTVLAGKPS-SLLSQLHAQIIKAYYEKVP-----SVATALLDAYVKTGNVVE 457

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC-S 462
           +  VF  +  +++++W++M+   A   D+  A+  F ++  E + PN  TF  V+ AC S
Sbjct: 458 SARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSS 517

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
            A  V+ G++I A+                +     + N+  E+ E V T     ++V W
Sbjct: 518 SAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNI--ESAEKVFTRQEERDIVSW 575

Query: 523 GSLMAACRVHGE----IELAEFAAKQLLQLD 549
            S++     HG+    +E+ +    Q L LD
Sbjct: 576 NSMITGYGQHGDAKKALEVFQIMQNQGLPLD 606



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/420 (22%), Positives = 194/420 (46%), Gaps = 49/420 (11%)

Query: 17  TAISSCSS---LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           TA+  CS    L   KQ H  ++K  +          + + T+  +  +  SS+  A  +
Sbjct: 311 TALKLCSQQRELNFTKQLHCGVVKNGYE-------FAQDIRTALMVTYSKCSSVDEAFKL 363

Query: 74  FSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           FS   A  + V+    I     ++  + A+ +F +M  EG+  + F++  +L    +   
Sbjct: 364 FSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAG--KPSS 421

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           LL   Q+H    K  +   P V T L+  Y   G ++++  +F  +  +DIV WS M+ G
Sbjct: 422 LLS--QLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTG 479

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVAL 251
             Q    ++ + +F ++    V+P+E   S +++ACS  A  + +G+ +H   + +  + 
Sbjct: 480 LAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSN 539

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
              + S L+TMY+  G ++ A+ +F +   +++V   +M++GY   GQ  DA+       
Sbjct: 540 ALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGY---GQHGDAK------- 589

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
                                +AL++F  MQ  G+  D VT + V++AC H G++++ ++
Sbjct: 590 ---------------------KALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEK 628

Query: 372 -IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
             ++ I        +   + ++D+Y++ G  + A ++   M    +   W +++ A  +H
Sbjct: 629 YFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVH 688


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/647 (34%), Positives = 348/647 (53%), Gaps = 36/647 (5%)

Query: 81  PSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE--GM 137
           P+ VS   FI   +   RP  AL  F  ML  GL  + F+FP   KA A A       G 
Sbjct: 74  PTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGP 133

Query: 138 QVHGLGTKLGF-GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
           Q+H L  + G+   DPFV    + MY   G +  AR +F++M  R+++ W+ ++     +
Sbjct: 134 QIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVID 193

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
           G   E    +  ++ +   P+ + +    +AC+ A  LS GE  H F++     +D  + 
Sbjct: 194 GRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVS 253

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           + ++  Y  C C                            AG+   AR +FD M  ++ +
Sbjct: 254 NAMVDFYGKCRC----------------------------AGK---ARAVFDGMRVRNSV 282

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            W +MI  YA++   ++AL ++   +  G +P    + SV++ CA L  L+  + +H   
Sbjct: 283 SWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVA 342

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            ++    ++ V +A++DMY KCG +E A +VF  M  RN+++W +MI  +A  GDA+NAL
Sbjct: 343 VRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNAL 402

Query: 437 IFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
             F+ M +     PN +T + V+ ACS  GL  +G E+F +M   + + P+ EHY C+VD
Sbjct: 403 AVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVD 462

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555
           L GRA +   A E+++ MP  P++ +WG+L+ AC++HG+ EL   A+++L +LDP   G 
Sbjct: 463 LLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEKLFELDPQDSGN 522

Query: 556 LVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQI 615
            VLLSN+ A   RW +  ++RK MK  GI KE  CS I   N V+ F   D  H +  +I
Sbjct: 523 HVLLSNMLASAGRWAEATDVRKEMKNVGIKKEPGCSWITWKNVVHVFYAKDTKHDRNSEI 582

Query: 616 YEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRI 675
              L ++  +++ +GY+PD   +L D+E+EEK   +  HSEKLAL +GLI       IRI
Sbjct: 583 QALLAKLKKQMQASGYMPDTQYSLYDVEEEEKETEVFQHSEKLALAFGLIHIPPSVPIRI 642

Query: 676 VKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            KNLR+C DCH   K VS +  REI++RD  RFH++K   CSCKDYW
Sbjct: 643 TKNLRICVDCHRAFKFVSGIVGREIIVRDNNRFHYFKQFECSCKDYW 689


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/567 (38%), Positives = 338/567 (59%), Gaps = 6/567 (1%)

Query: 28  MKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNK 87
           +K+ HA ++ +S  H+ Q ++    ++ S++L     S L +A  +F QI +P + + N 
Sbjct: 327 VKKLHAHLV-VSGLHNCQYAM--SKVIRSYALQQ---SDLVFAHKVFEQIESPTTFLWNT 380

Query: 88  FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
            +R ++ S  PK A+  + K   +G+  D  +FP +LKA A+     EG Q+H    KLG
Sbjct: 381 LLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLG 440

Query: 148 FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207
           F  D FV   L+ +Y ACG ++ AR +FD+M  +D+V W+ +I GY Q   F EVL LFE
Sbjct: 441 FLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFE 500

Query: 208 EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG 267
            M+   V+ D++ + K++SAC+  G+ S  + +  +I  N++ +D +L +TLI  Y   G
Sbjct: 501 LMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIG 560

Query: 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327
            +  A+ +F ++  KN V   AM+  Y++ G +  A+ IFDQ+  KDLI WS+MI  Y++
Sbjct: 561 QLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQ 620

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
            +H  ++L+LF +MQ   +KPD V + SV+SACAHLG LD  + IH Y+ +N    D  +
Sbjct: 621 ASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIM 680

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
            N++IDM+AKCG ++ A +VF  M  ++ +SW S+I   A +G    AL  F  M  E  
Sbjct: 681 ENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGP 740

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            PN VTF+GVL AC++  LV EG + F  M   +N+ P+ +HYGC+V +  RA  L +A 
Sbjct: 741 RPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAK 800

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
             +  MP AP+ V+W  L+ AC+ HG + +AE A K+L +LDP + G  +LLSNIYA   
Sbjct: 801 NFINEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNIYASAD 860

Query: 568 RWQDVGELRKSMKERGILKERACSRIE 594
           RW D   +R+ M +  + K  ACS ++
Sbjct: 861 RWSDALNVRQWMADTAVRKSPACSVVD 887



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/307 (39%), Positives = 197/307 (64%), Gaps = 1/307 (0%)

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
           +KN+V    +++G++  G++E ARL+FDQM  ++++ W+ +I GY       EA+ LF  
Sbjct: 3   MKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRH 62

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M   G+ P ++T+L+V+ A ++LG +   + +H Y  K     D RV N++ID+YAK GS
Sbjct: 63  MMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGS 122

Query: 401 LESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           ++++ +VF+ M  RRN++SWTS+I+ FA+HG +  AL  F +M+   I PN +TF+ V+ 
Sbjct: 123 VQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVIN 182

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           ACSH GLV++G   F SM  EYNI P+ +H+GC++D+ GRA  L EA +++E +P   NV
Sbjct: 183 ACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNV 242

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
           ++W  L+  C  +GE+E+ + A K +  L+ +  G   +LSN+  +  R+ D  + RK +
Sbjct: 243 IVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLL 302

Query: 580 KERGILK 586
            ER I+K
Sbjct: 303 DERKIVK 309



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 150/299 (50%), Gaps = 41/299 (13%)

Query: 154 VQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN 213
           V TG  G     G+I  ARL+FD+M  R++V W+ +IDGY +  L+ E + LF  M    
Sbjct: 12  VITGFAGW----GEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGG 67

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           + P E+ +  ++ A S  G +  GE +H + +   +  DA + ++LI +YA  G +  + 
Sbjct: 68  ISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSL 127

Query: 274 GLFDKVL-LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332
            +FD++L  +NLV  T+++SG++  G                                  
Sbjct: 128 KVFDEMLDRRNLVSWTSIISGFAMHGL-------------------------------SV 156

Query: 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA-QRIHLYIDKNAFGGDLRVNNAI 391
           EAL+LF EM+  G++P+++T LSVI+AC+H G+++Q        + +     +++    I
Sbjct: 157 EALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCI 216

Query: 392 IDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGD---ARNALIFFNKMKDES 446
           IDM  + G L  A ++ E +    NVI W  ++   + +G+    + A+   + ++ ES
Sbjct: 217 IDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERES 275



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 200/419 (47%), Gaps = 24/419 (5%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           YA  +F Q+P          I   + +     A+ +F  M+  G++    +   ++ AI+
Sbjct: 24  YARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVPAIS 83

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM-SYRDIVPWS 187
              G+L G  +HG   K G  SD  V   L+ +Y   G + ++  +FD+M   R++V W+
Sbjct: 84  NLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWT 143

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA-----VHE 242
            +I G+  +GL  E L LF EM+ + + P+ +    +++ACS  G +  G A     V+E
Sbjct: 144 SIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYE 203

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVE 301
           + ID  +    H    +I M    G +  A+ + + + ++ N++V   ++   S+ G+VE
Sbjct: 204 YNIDPEI---KHF-GCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVE 259

Query: 302 DA----RLIFDQMVEK--DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
                 ++I D   E   D    S +++     +  ++A KL +E ++      KV  L+
Sbjct: 260 MGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKIV-----KVPGLA 314

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA-KCGSLESAREVFERMRRR 414
           ++   + + +++  +++H ++  +         + +I  YA +   L  A +VFE++   
Sbjct: 315 LVVTRSFV-MMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESP 373

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
               W +++   A     ++A++F+ K +++ + P+ +TF  VL AC+      EG ++
Sbjct: 374 TTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQM 432


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/629 (35%), Positives = 352/629 (55%), Gaps = 40/629 (6%)

Query: 102 LKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQ--VHGLGTKLGFGSDPFVQTGLV 159
           L+VF  M   G+ ++ F+   ++K  A ++  +  +   VHG   K GF SD F+ + +V
Sbjct: 200 LRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMV 259

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN------GLFDEVLNLFEEMKMSN 213
           GMY   G + +A  +F  +   ++V ++ MI G  ++       +  E L+L+ E++   
Sbjct: 260 GMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRG 319

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           +EP E   S ++ AC+ AG++ +G+ +H  ++ +    D  + S LI +Y N GCM    
Sbjct: 320 MEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCM---- 375

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
                                      ED    F  + ++D++ W+AMISG  +N   + 
Sbjct: 376 ---------------------------EDGFRCFTSVPKQDVVTWTAMISGCVQNELFER 408

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
           AL LF+E+   G+KPD  T+ SV++ACA L V    ++I  +  K+ FG    + N+ I 
Sbjct: 409 ALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMGNSCIH 468

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
           MYA+ G + +A   F+ M   +++SW+++I++ A HG AR+AL FFN+M D  + PN +T
Sbjct: 469 MYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEIT 528

Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
           F+GVL ACSH GLVDEG + + +M  EY + P  +H  C+VDL GRA  L +A   +   
Sbjct: 529 FLGVLTACSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADAEAFIRDS 588

Query: 514 PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573
            F    VIW SL+A+CR+H ++E  +  A ++++L P    + V L NIY          
Sbjct: 589 IFHDEPVIWRSLLASCRIHRDMERGQLVADRIMELQPSSSASYVNLYNIYLDAGELSLAS 648

Query: 574 ELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVP 633
           ++R  MKERG+ KE   S IE+ + V+ F+  D+SH +++ IY KL E++S++       
Sbjct: 649 KIRDVMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYSKLAEMLSKIDKL-TAT 707

Query: 634 DIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVS 693
           D  S   D     ++  + WHSEKLA+  GLI   + + IR++KNLRVC DCH  +KL+S
Sbjct: 708 DASSTKSDDTIRNEQSWMNWHSEKLAVALGLIHLPQSAPIRVMKNLRVCRDCHLTMKLIS 767

Query: 694 KVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           K   REIV+RD  RFHH++DG CSC DYW
Sbjct: 768 KSEKREIVLRDAIRFHHFRDGSCSCADYW 796



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 174/375 (46%), Gaps = 41/375 (10%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRP------KHALKVFLKMLNEGLTIDRFS 119
           +L  A+++F  +  P   V N  I  +            + AL ++ ++ + G+    F+
Sbjct: 267 ALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGMEPTEFT 326

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           F  +++A   A  +  G Q+HG   K  F  D F+ + L+ +Y   G + D    F  + 
Sbjct: 327 FSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVP 386

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
            +D+V W+ MI G  QN LF+  L LF E+  + ++PD   +S +++AC+       GE 
Sbjct: 387 KQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGEQ 446

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +  F   +       + ++ I MYA                               R+G 
Sbjct: 447 IQCFATKSGFGRFTAMGNSCIHMYA-------------------------------RSGD 475

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           V  A   F +M   D++ WSA+IS +A++   ++AL+ FNEM    + P+++T L V++A
Sbjct: 476 VHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEITFLGVLTA 535

Query: 360 CAHLGVLDQAQRIHLYI-DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER--MRRRNV 416
           C+H G++D+  + +  + ++ A    ++    ++D+  + G L  A E F R  +     
Sbjct: 536 CSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADA-EAFIRDSIFHDEP 594

Query: 417 ISWTSMINAFAIHGD 431
           + W S++ +  IH D
Sbjct: 595 VIWRSLLASCRIHRD 609


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/602 (36%), Positives = 339/602 (56%), Gaps = 34/602 (5%)

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGAC--GKILDARLMFDKMSYR 181
           L  + R + + E  QVH    KLG   D F  + LV        G +  A  +F ++   
Sbjct: 34  LSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEP 93

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
               ++ MI G   +   +E L L+ EM    +EPD      +L ACS  G L  G  +H
Sbjct: 94  GSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIH 153

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
             +    +  D  +Q+ LI MY  C                               G +E
Sbjct: 154 AHVFKAGLEGDVFVQNGLINMYGKC-------------------------------GAIE 182

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM-KPDKVTMLSVISAC 360
            A ++F+QM EK +  WS++I  +A      E L L  +M   G  + ++  ++S +SAC
Sbjct: 183 HASVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSAC 242

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
            HLG  +  + IH  + +N    ++ V  ++IDMY K GSLE    VF+ M ++N  S+T
Sbjct: 243 THLGSPNFGRCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYT 302

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
            +I   AIHG  R AL  F+ M +E + P+ V ++GVL ACSHAGLV+EG + F  +  E
Sbjct: 303 VIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFE 362

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
           + I P  +HYGCMVDL GRA +L+ A +L+++MP  PN V+W SL++AC+VH  +E+ E 
Sbjct: 363 HKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEI 422

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
           AA+ + +L+  + G  ++L+N+YA+ K+W DV  +R  M E+ +++    S +E N  VY
Sbjct: 423 AAENIFKLNQHNPGDYLVLANMYARAKKWADVARIRTEMAEKHLVQTPGFSLVEANRNVY 482

Query: 601 EFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLAL 660
           +F++ D+S  Q + IY+ + ++  +LK  GY PD+   L+D++++EKR+ +  HS+KLA+
Sbjct: 483 KFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAI 542

Query: 661 CYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720
            + LI + + S IRI +N+R+C DCH + K +S +Y REI +RDR RFHH+KDG CSCKD
Sbjct: 543 AFALIQTSEGSRIRISRNIRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKD 602

Query: 721 YW 722
           YW
Sbjct: 603 YW 604



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 215/441 (48%), Gaps = 54/441 (12%)

Query: 4   LSQPTKPLTLPTSTAISS------------CSSLTHMKQTHAQILKLSHSHHSQNSLLLK 51
           LS P  P   P S+ +++            C S+   KQ HA ILKL   +   +S    
Sbjct: 13  LSLPNNP---PQSSELNAKFNVQGLSLLKRCKSMEEFKQVHAHILKLGLFY---DSFCGS 66

Query: 52  LLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE 111
            L+ + +L  +   S+ YA SIF QI  P S   N  IR    S   + AL ++++ML  
Sbjct: 67  NLVATCAL--SRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLER 124

Query: 112 GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA 171
           G+  D F++P +LKA +    L EG+Q+H    K G   D FVQ GL+ MYG CG I  A
Sbjct: 125 GIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHA 184

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV-EPDEMVLSKILSACSR 230
            ++F++M  + +  WS +I  +    ++ E L L  +M        +E +L   LSAC+ 
Sbjct: 185 SVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTH 244

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
            G+ ++G  +H  ++ N   L+  ++++LI MY   G ++  KGL               
Sbjct: 245 LGSPNFGRCIHGILLRNISELNVAVKTSLIDMYVKSGSLE--KGL--------------- 287

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
                          +F  M +K+   ++ +I+G A +   +EAL +F++M   G+ PD 
Sbjct: 288 --------------CVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDD 333

Query: 351 VTMLSVISACAHLGVLDQA-QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           V  + V+SAC+H G++++  Q  +    ++     ++    ++D+  + G L+ A ++ +
Sbjct: 334 VVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIK 393

Query: 410 RMR-RRNVISWTSMINAFAIH 429
            M  + N + W S+++A  +H
Sbjct: 394 SMPIKPNDVVWRSLLSACKVH 414


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/553 (38%), Positives = 325/553 (58%), Gaps = 15/553 (2%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           AR +FDKM  RD+  W+VM+ GY +N        LFE M     E D +  + +LS  ++
Sbjct: 14  ARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMP----ERDIVSWNAMLSGYAQ 69

Query: 231 AGNLSYG-EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
            G +    E  ++  + N ++ +      L+  Y   G ++ AK LF+  +   LV    
Sbjct: 70  NGFVDEAREIFYKMPLKNGISWNG-----LLAAYVQNGRIEDAKRLFESKMDWTLVSWNC 124

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
           ++ G+     V   R +FD M ++D I WSAMI+GY++N   +EAL  F EMQ    + +
Sbjct: 125 LMGGF-----VRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLN 179

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           + +    +S C+++  L+  +++H  + K  +     V NA++ MY KCGS++ AR+ F+
Sbjct: 180 RSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQ 239

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            +  ++V+SW +MI+ +A HG    AL  F  MK   I P+  T + VL ACSHAGLVD+
Sbjct: 240 EILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQ 299

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G E F SM  +Y I  K  HY CMVDL GRA  L EA  L++ MPF P+   WG+L+ A 
Sbjct: 300 GSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGAS 359

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
           R+HG  EL E AA+ + +++P + G  +LLS +YA   RW D G++R  M+ +G+ K   
Sbjct: 360 RIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPG 419

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
            S +E+ N+++ F   D SH  TD+IY  L E+  +LK  GY+   +    D+E+EEK  
Sbjct: 420 YSWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVH 479

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
           ++ +HSEKLA+ YG++       IR++KNLRVCEDCHN IK +SK+  R I++RD  RFH
Sbjct: 480 MLKYHSEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFH 539

Query: 710 HYKDGVCSCKDYW 722
           +++ G CSC+D+W
Sbjct: 540 YFEGGSCSCRDFW 552



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 125/269 (46%), Gaps = 33/269 (12%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           G +   R +FD M  RD + WS MI GY QNG  +E L+ F EM+      +    +  L
Sbjct: 128 GFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCAL 187

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
           S CS    L  G  +H  ++        ++ + L+ MY  CG +D A+  F ++L K++V
Sbjct: 188 STCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVV 247

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
               M+ GY+R G                                 +EAL +F  M+  G
Sbjct: 248 SWNTMIHGYARHG-------------------------------FGEEALTVFELMKTTG 276

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIIDMYAKCGSLESA 404
           ++PD  TM+SV++AC+H G++DQ       ++++      L     ++D+  + G LE A
Sbjct: 277 IRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEA 336

Query: 405 REVFERMR-RRNVISWTSMINAFAIHGDA 432
           + + + M    +  +W +++ A  IHG+ 
Sbjct: 337 QNLMKNMPFEPDAATWGALLGASRIHGNT 365



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 150/301 (49%), Gaps = 18/301 (5%)

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           +I+ Y      D+A+ LFDK+  ++L     M++GY R   ++ AR +F++M E+D++ W
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSW 60

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           +AM+SGYA+N    EA ++F +M +     + ++   +++A    G ++ A+R+     +
Sbjct: 61  NAMLSGYAQNGFVDEAREIFYKMPL----KNGISWNGLLAAYVQNGRIEDAKRLF----E 112

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
           +     L   N ++      G +   R +F+ M +R+ ISW++MI  ++ +G +  AL F
Sbjct: 113 SKMDWTLVSWNCLMG-----GFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHF 167

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F +M+ +    N  +F   L  CS+   ++ GR++   +         +     ++ ++ 
Sbjct: 168 FVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKA-GYQTGWYVGNALLAMYC 226

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVH--GEIELAEFAAKQLLQLDPDHDGAL 556
           +   + EA +  + +    +VV W +++     H  GE  L  F   +   + PD D  +
Sbjct: 227 KCGSIDEARDAFQEI-LEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPD-DATM 284

Query: 557 V 557
           V
Sbjct: 285 V 285



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 113/253 (44%), Gaps = 31/253 (12%)

Query: 72  SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131
           ++F  +P   S   +  I   S +   + AL  F++M  +   ++R SF   L   +   
Sbjct: 135 NLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIA 194

Query: 132 GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
            L  G Q+H    K G+ +  +V   L+ MY  CG I +AR  F ++  +D+V W+ MI 
Sbjct: 195 ALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIH 254

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           GY ++G  +E L +FE MK + + PD+  +  +L+ACS AG +  G    E+    N   
Sbjct: 255 GYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGS---EYFYSMNR-- 309

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM- 310
                                    D  +   LV  T MV    RAGQ+E+A+ +   M 
Sbjct: 310 -------------------------DYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMP 344

Query: 311 VEKDLICWSAMIS 323
            E D   W A++ 
Sbjct: 345 FEPDAATWGALLG 357


>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
          Length = 836

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/712 (31%), Positives = 364/712 (51%), Gaps = 75/712 (10%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           NK +  ++ +     A+ VF +M   G+  D ++   +L A  RA  L EG  VH    K
Sbjct: 125 NKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALK 184

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
           L   + P V   L GMY     +  A  + D M    +VPW+ ++    + GL D+ L L
Sbjct: 185 LALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALEL 244

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGN-------------------------------- 233
              M  S  EP+    + +LS CSR G                                 
Sbjct: 245 AARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVAN 304

Query: 234 ---LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
              L +G  +H F + N +  D +  + L+ MYA CG +D A+ + D +  +NL    ++
Sbjct: 305 TGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSL 364

Query: 291 VSGYSRAGQVEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLF-------- 338
           V+GY+ AG+ + A  + + M    ++ D+  W+ +I+GY+ N    +A+ L         
Sbjct: 365 VAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGV 424

Query: 339 ---------------------------NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
                                      +EMQ  G++P  VTM  ++ ACA L +  + + 
Sbjct: 425 TPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKE 484

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           +H +  + A+  D+ V+ A+IDMY+K GSL SA+ +FE ++++N++   +M+   A+HG 
Sbjct: 485 LHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQ 544

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
            R A+  F+ M +  + P+ +TF  +L AC   GLV EG E F SM  +Y + P  E+Y 
Sbjct: 545 GREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYA 604

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           CMVDL  R   L EA++ +E  P  P    WG+L+  C +HG + LAE AA+ L  L+P 
Sbjct: 605 CMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPY 664

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
           +    +L+ N+Y  ++ + +   L+ +MK RG+      S I++   ++ F    + H +
Sbjct: 665 NSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPE 724

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS 671
           T +IYE+L  ++ ++K AGYVPD      ++++EEK +++L H+EKLA+ YGLI S    
Sbjct: 725 TAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASR 784

Query: 672 C-IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             +R++KN R+C DCH   K +S +  R+I++RD  RFHH+ DG CSC DYW
Sbjct: 785 APVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 836



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 190/408 (46%), Gaps = 44/408 (10%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD-ARLMFDKM--SYRDIVPWSVMIDGYF 194
           Q+H L  + G   DP V   LV +    G+    ARL+ +      +D V W+  +    
Sbjct: 73  QLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLA 132

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           +   +DE + +F EM+   V  D    +++L AC RAG L  G AVH + +   +ALDAH
Sbjct: 133 EAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYAL--KLALDAH 190

Query: 255 --LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV- 311
             +   L  MYA    +  A  + D +   ++V   A+V+  +R G V+DA  +  +M  
Sbjct: 191 PLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSR 250

Query: 312 ---EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
              E ++  W+ ++SG + +   +EAL +   M   G++PD  T+ S++ + A+ G+L  
Sbjct: 251 SGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRH 310

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
              IH +  +N    D+    A++DMYAKCG L+ A++V + +  RN+ +W S++  +A 
Sbjct: 311 GMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYAN 370

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
            G    AL     MK   +DP+  T+ G++   S  G   +                   
Sbjct: 371 AGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQA------------------ 412

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
                        LLR+    ++     PNVV W SL++    +GE E
Sbjct: 413 -----------VLLLRQ----IKAAGVTPNVVSWTSLISGSCHNGEYE 445



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 190/413 (46%), Gaps = 56/413 (13%)

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
           P P     N  +   S   R + AL V   ML +GL  D  +   +LK++A    L  GM
Sbjct: 253 PEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGM 312

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           ++H    +     D +  T LV MY  CG++  A+ + D + +R++  W+ ++ GY   G
Sbjct: 313 EIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAG 372

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY--------------------- 236
            FD  L L E MK + ++PD    + +++  S  G  S                      
Sbjct: 373 RFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWT 432

Query: 237 ---------GEAVHEFIIDNNVALDAHLQSTLITM----YANCGCMDMAKG------LFD 277
                    GE    F   + +  D  +Q +L+TM     A  G     KG         
Sbjct: 433 SLISGSCHNGEYEDSFYFCHEMQKDG-VQPSLVTMSVLLRACAGLALQKKGKELHCFALR 491

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
           +    ++VVSTA++  YS+ G +  A++IF+ + +K+L+  +AM++G A +   +EA++L
Sbjct: 492 RAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIEL 551

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID--KNAFGGDLRVNN--AIID 393
           F++M   G+KPD +T  ++++AC  +G++ +      Y D  +  +G      N   ++D
Sbjct: 552 FHDMWNSGLKPDSITFTALLTACRSMGLVTEGWE---YFDSMETKYGVKPTTENYACMVD 608

Query: 394 MYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIHGD-------ARNALIF 438
           + A+CG L+ A +  ER       S W +++   +IHG+       ARN  I 
Sbjct: 609 LLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFIL 661



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 105/274 (38%), Gaps = 53/274 (19%)

Query: 353 MLSVISACAHLGVLDQAQRI--------HLYIDKNAFGGDLRVNNAIIDMYAKCGSLES- 403
           ++S++  CA L   D   R+        H    +     D RV  A++D+ A+ G   S 
Sbjct: 47  LVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSC 106

Query: 404 AREVFERMR--RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
           AR + E      ++ + W   +   A   +   A+  F +M+   +  +G T   VL+AC
Sbjct: 107 ARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHAC 166

Query: 462 SHAGLVDEGREIFAS----MTNEYNIPPKY--------------------------EHYG 491
             AG + EGR + A       + + + P +                            + 
Sbjct: 167 GRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWN 226

Query: 492 CMVDLFGRANLLREALELVETMPFA---PNVVIWGSLMAACRVHGEIELAEFAAKQLLQ- 547
            +V    R  L+ +ALEL   M  +   PNV  W ++++ C  HG    A      +L+ 
Sbjct: 227 AVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQ 286

Query: 548 -LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
            L PD      LL ++        + G LR  M+
Sbjct: 287 GLRPDATTVSSLLKSV-------ANTGLLRHGME 313


>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/548 (37%), Positives = 331/548 (60%), Gaps = 4/548 (0%)

Query: 178 MSYRDIVPWSVMIDGYFQNGLFDEVL-NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
           M +RD + W+ ++    Q  L  + L         S + PD+ V S ++ AC+  G++  
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G+ VH   I +  + D  ++S+L+ MYA C  +D AK +FD + +KN +  TAMVSGY++
Sbjct: 61  GKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAK 120

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP-DKVTMLS 355
           +G+ E+A  +F ++  K+L  W+A+ISG+ ++    EA  +F EM+   +   D + + S
Sbjct: 121 SGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSS 180

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           ++ ACA+L      +++H  +    F   + ++NA+IDMYAKC  + +A+++F RMR R+
Sbjct: 181 IVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRD 240

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           V+SWTS+I   A HG A  AL  +++M    + PN VTF+G++YACSH G V +GRE+F 
Sbjct: 241 VVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVTFVGLIYACSHVGFVAKGRELFQ 300

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           SMT +Y I P  +HY C++DL GR+ LL EA  L+ TMPF P+   W +L++AC+  G+ 
Sbjct: 301 SMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGQG 360

Query: 536 ELAEFAAKQLL-QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
           ++    A  L+    P      +LLSNIYA    W  V E R+ + +  + K+   S +E
Sbjct: 361 QMGVRIADHLVSSFKPKDPSTYILLSNIYASASLWGKVSEARRKLGDMEVRKDPGYSSVE 420

Query: 595 MNNEVYEFLTADRSHKQTDQIYEKLNEVISELK-PAGYVPDIHSALVDLEDEEKREVILW 653
           +  E   F   + SH   + I+  L ++  E++   GYVPD    L D++++EK +++ W
Sbjct: 421 VRKETEVFYAGETSHALKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFW 480

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HSE+ A+ YGL+ +   + IRIVKNLRVC DCH  +K +S++  REI++RD TR+HH+K 
Sbjct: 481 HSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKG 540

Query: 714 GVCSCKDY 721
           G CSC D+
Sbjct: 541 GKCSCNDF 548



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 172/403 (42%), Gaps = 70/403 (17%)

Query: 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD-A 171
           L  D F F  ++KA A    +  G QVH       + +D  V++ LV MY  C ++LD A
Sbjct: 38  LRPDDFVFSALVKACANLGSIKLGKQVHCHFIVSEYSNDDVVKSSLVDMYAKC-RLLDCA 96

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP--------------- 216
           + +FD +  ++ + W+ M+ GY ++G  +E L LF  + + N+                 
Sbjct: 97  KAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGL 156

Query: 217 -----------------DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259
                            D +VLS I+ AC+       G  VH  +I         + + L
Sbjct: 157 EAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNAL 216

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWS 319
           I MYA C  +  AK +F ++  +++V  T+++ G ++ GQ E                  
Sbjct: 217 IDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAE------------------ 258

Query: 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379
                        +AL L++EM   G+KP++VT + +I AC+H+G + + + +   + K+
Sbjct: 259 -------------KALALYDEMVSHGVKPNEVTFVGLIYACSHVGFVAKGRELFQSMTKD 305

Query: 380 -AFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALI 437
                 L+    ++D+  + G L+ A  +   M    +  +W ++++A    G  +  + 
Sbjct: 306 YGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGQGQMGVR 365

Query: 438 FFNKMKD--ESIDPNGVTFIGVLYA-CSHAGLVDEGREIFASM 477
             + +    +  DP+    +  +YA  S  G V E R     M
Sbjct: 366 IADHLVSSFKPKDPSTYILLSNIYASASLWGKVSEARRKLGDM 408



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 112/245 (45%), Gaps = 3/245 (1%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-DRFSFPPILKAIA 128
           AL +F ++P          I     S +   A  VF +M  E + I D      I+ A A
Sbjct: 127 ALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACA 186

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
                + G QVHGL   LGF S  F+   L+ MY  C  ++ A+ +F +M +RD+V W+ 
Sbjct: 187 NLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTS 246

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDN 247
           +I G  Q+G  ++ L L++EM    V+P+E+    ++ ACS  G ++ G E       D 
Sbjct: 247 LIVGMAQHGQAEKALALYDEMVSHGVKPNEVTFVGLIYACSHVGFVAKGRELFQSMTKDY 306

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKV-LLKNLVVSTAMVSGYSRAGQVEDARLI 306
            +       + L+ +    G +D A+ L   +    +     A++S   R GQ +    I
Sbjct: 307 GIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGQGQMGVRI 366

Query: 307 FDQMV 311
            D +V
Sbjct: 367 ADHLV 371


>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/712 (31%), Positives = 364/712 (51%), Gaps = 75/712 (10%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           NK +  ++ +     A+ VF +M   G+  D ++   +L A  RA  L EG  VH    K
Sbjct: 125 NKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALK 184

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
           L   + P V   L GMY     +  A  + D M    +VPW+ ++    + GL D+ L L
Sbjct: 185 LALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALEL 244

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGN-------------------------------- 233
              M  S  EP+    + +LS CSR G                                 
Sbjct: 245 AARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVAN 304

Query: 234 ---LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
              L +G  +H F + N +  D +  + L+ MYA CG +D A+ + D +  +NL    ++
Sbjct: 305 TGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSL 364

Query: 291 VSGYSRAGQVEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLF-------- 338
           V+GY+ AG+ + A  + + M    ++ D+  W+ +I+GY+ N    +A+ L         
Sbjct: 365 VAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGV 424

Query: 339 ---------------------------NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
                                      +EMQ  G++P  VTM  ++ ACA L +  + + 
Sbjct: 425 TPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKE 484

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           +H +  + A+  D+ V+ A+IDMY+K GSL SA+ +FE ++++N++   +M+   A+HG 
Sbjct: 485 LHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQ 544

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
            R A+  F+ M +  + P+ +TF  +L AC   GLV EG E F SM  +Y + P  E+Y 
Sbjct: 545 GREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYA 604

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
           CMVDL  R   L EA++ +E  P  P    WG+L+  C +HG + LAE AA+ L  L+P 
Sbjct: 605 CMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPY 664

Query: 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
           +    +L+ N+Y  ++ + +   L+ +MK RG+      S I++   ++ F    + H +
Sbjct: 665 NSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPE 724

Query: 612 TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDS 671
           T +IYE+L  ++ ++K AGYVPD      ++++EEK +++L H+EKLA+ YGLI S    
Sbjct: 725 TAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASR 784

Query: 672 C-IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             +R++KN R+C DCH   K +S +  R+I++RD  RFHH+ DG CSC DYW
Sbjct: 785 APVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 836



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 190/408 (46%), Gaps = 44/408 (10%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILD-ARLMFDKM--SYRDIVPWSVMIDGYF 194
           Q+H L  + G   DP V   LV +    G+    ARL+ +      +D V W+  +    
Sbjct: 73  QLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLA 132

Query: 195 QNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH 254
           +   +DE + +F EM+   V  D    +++L AC RAG L  G AVH + +   +ALDAH
Sbjct: 133 EAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYAL--KLALDAH 190

Query: 255 --LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV- 311
             +   L  MYA    +  A  + D +   ++V   A+V+  +R G V+DA  +  +M  
Sbjct: 191 PLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSR 250

Query: 312 ---EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
              E ++  W+ ++SG + +   +EAL +   M   G++PD  T+ S++ + A+ G+L  
Sbjct: 251 SGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRH 310

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
              IH +  +N    D+    A++DMYAKCG L+ A++V + +  RN+ +W S++  +A 
Sbjct: 311 GMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYAN 370

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
            G    AL     MK   +DP+  T+ G++   S  G   +                   
Sbjct: 371 AGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQA------------------ 412

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
                        LLR+    ++     PNVV W SL++    +GE E
Sbjct: 413 -----------VLLLRQ----IKAAGVTPNVVSWTSLISGSCHNGEYE 445



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 190/413 (46%), Gaps = 56/413 (13%)

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGM 137
           P P     N  +   S   R + AL V   ML +GL  D  +   +LK++A    L  GM
Sbjct: 253 PEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGM 312

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           ++H    +     D +  T LV MY  CG++  A+ + D + +R++  W+ ++ GY   G
Sbjct: 313 EIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAG 372

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY--------------------- 236
            FD  L L E MK + ++PD    + +++  S  G  S                      
Sbjct: 373 RFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWT 432

Query: 237 ---------GEAVHEFIIDNNVALDAHLQSTLITM----YANCGCMDMAKG------LFD 277
                    GE    F   + +  D  +Q +L+TM     A  G     KG         
Sbjct: 433 SLISGSCHNGEYEDSFYFCHEMQKDG-VQPSLVTMSVLLRACAGLALQKKGKELHCFALR 491

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
           +    ++VVSTA++  YS+ G +  A++IF+ + +K+L+  +AM++G A +   +EA++L
Sbjct: 492 RAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIEL 551

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID--KNAFGGDLRVNN--AIID 393
           F++M   G+KPD +T  ++++AC  +G++ +      Y D  +  +G      N   ++D
Sbjct: 552 FHDMWNSGLKPDSITFTALLTACRSMGLVTEGWE---YFDSMETKYGVKPTTENYACMVD 608

Query: 394 MYAKCGSLESAREVFERMRRRNVIS-WTSMINAFAIHGD-------ARNALIF 438
           + A+CG L+ A +  ER       S W +++   +IHG+       ARN  I 
Sbjct: 609 LLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFIL 661



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 105/274 (38%), Gaps = 53/274 (19%)

Query: 353 MLSVISACAHLGVLDQAQRI--------HLYIDKNAFGGDLRVNNAIIDMYAKCGSLES- 403
           ++S++  CA L   D   R+        H    +     D RV  A++D+ A+ G   S 
Sbjct: 47  LVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSC 106

Query: 404 AREVFERMR--RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
           AR + E      ++ + W   +   A   +   A+  F +M+   +  +G T   VL+AC
Sbjct: 107 ARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHAC 166

Query: 462 SHAGLVDEGREIFAS----MTNEYNIPPKY--------------------------EHYG 491
             AG + EGR + A       + + + P +                            + 
Sbjct: 167 GRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWN 226

Query: 492 CMVDLFGRANLLREALELVETMPFA---PNVVIWGSLMAACRVHGEIELAEFAAKQLLQ- 547
            +V    R  L+ +ALEL   M  +   PNV  W ++++ C  HG    A      +L+ 
Sbjct: 227 AVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQ 286

Query: 548 -LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
            L PD      LL ++        + G LR  M+
Sbjct: 287 GLRPDATTVSSLLKSV-------ANTGLLRHGME 313


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/624 (36%), Positives = 357/624 (57%), Gaps = 37/624 (5%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
             ++F +M   G+ + R  F   LK  ++   L    Q+H    K G+     ++T L+ 
Sbjct: 290 GFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMV 349

Query: 161 MYGACGKILDARLMFDKM-SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
            Y  C  + +A  +F    +  ++V W+ MI G+ QN    + ++LF +M    V P+  
Sbjct: 350 TYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHF 409

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
             S +L     AG  S              +L + L + +I  Y            ++KV
Sbjct: 410 TYSTVL-----AGKPS--------------SLLSQLHAQIIKAY------------YEKV 438

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
                 V+TA++  Y + G V ++  +F  +  KD++ WSAM++G A+    ++A+++F 
Sbjct: 439 P----SVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFI 494

Query: 340 EMQVCGMKPDKVTMLSVISACAH-LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
           ++   G+KP++ T  SVI+AC+     ++  ++IH    K+     L V++A++ MY+K 
Sbjct: 495 QLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKK 554

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458
           G++ESA +VF R   R+++SW SMI  +  HGDA+ AL  F  M+++ +  + VTFIGVL
Sbjct: 555 GNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVL 614

Query: 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN 518
            AC+HAGLV+EG + F  M  +Y+I  K EHY CMVDL+ RA +  +A++++  MPF  +
Sbjct: 615 TACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPAS 674

Query: 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578
             IW +L+AACRVH  +EL + AA++L+ L P+     VLLSNI+A    W++   +RK 
Sbjct: 675 PTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKL 734

Query: 579 MKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA 638
           M ER + KE  CS IE+ N ++ FL  D SH  +D +Y KL E+  +LK  GY PD +  
Sbjct: 735 MDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYV 794

Query: 639 LVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
             D+E+E K  ++  HSE+LA+ YGLI+    + I+I KNLR+C DCHN I+L+S +  R
Sbjct: 795 FHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEER 854

Query: 699 EIVIRDRTRFHHYKDGVCSCKDYW 722
            +++RD  RFHH+K GVCSC  YW
Sbjct: 855 TLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 121/489 (24%), Positives = 218/489 (44%), Gaps = 39/489 (7%)

Query: 42  HHSQNSLLLKLLLTSFSLP-TTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKH 100
           HH ++ L     L   SLP  + PS   YA  +F + P       N+ +   S ++  + 
Sbjct: 28  HHIKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDRE 87

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL +F  + + GL +D  +    LK        + G QVH    K GF  D  V T LV 
Sbjct: 88  ALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVD 147

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY       D R +FD+M  +++V W+ ++ GY +NGL DEV++L  +M+M  V P+   
Sbjct: 148 MYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFT 207

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
            + +L A +    +  G  VH  I+ N       + + LI MY     +  A+ +FD ++
Sbjct: 208 FATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMV 267

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
           +++ V    M+ GY                         A I  Y       E  ++F+ 
Sbjct: 268 VRDSVTWNIMIGGY-------------------------AAIGFYL------EGFQMFHR 296

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M++ G+K  +    + +  C+    L+  +++H  + KN +     +  A++  Y+KC S
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSS 356

Query: 401 LESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
           ++ A ++F       NV++WT+MI  F  + + + A+  F +M  E + PN  T+  VL 
Sbjct: 357 VDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLA 416

Query: 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
               + L     +I  +    Y   P       ++D + +   + E+  +  ++P A ++
Sbjct: 417 GKPSSLLSQLHAQIIKAY---YEKVPSVA--TALLDAYVKTGNVVESARVFYSIP-AKDI 470

Query: 520 VIWGSLMAA 528
           V W +++  
Sbjct: 471 VAWSAMLTG 479



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/451 (26%), Positives = 204/451 (45%), Gaps = 47/451 (10%)

Query: 107 KMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACG 166
           +M  EG+  + F+F  +L A+A    +  G+QVH +  K GF    FV   L+ MY    
Sbjct: 195 QMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSE 254

Query: 167 KILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS 226
            + DA  +FD M  RD V W++MI GY   G + E   +F  M+++ V+    V    L 
Sbjct: 255 MVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALK 314

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV-LLKNLV 285
            CS+   L++ + +H  ++ N       +++ L+  Y+ C  +D A  LF       N+V
Sbjct: 315 LCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVV 374

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
             TAM                               I G+ +NN+ ++A+ LF +M   G
Sbjct: 375 TWTAM-------------------------------IGGFVQNNNNKKAVDLFCQMSREG 403

Query: 346 MKPDKVTMLSVISACAHLGVLDQ--AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
           ++P+  T  +V++      +L Q  AQ I  Y +K        V  A++D Y K G++  
Sbjct: 404 VRPNHFTYSTVLAGKPS-SLLSQLHAQIIKAYYEKVP-----SVATALLDAYVKTGNVVE 457

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC-S 462
           +  VF  +  +++++W++M+   A   D+  A+  F ++  E + PN  TF  V+ AC S
Sbjct: 458 SARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSS 517

Query: 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522
            A  V+ G++I A+                +     + N+  E+ E V T     ++V W
Sbjct: 518 SAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNI--ESAEKVFTRQEERDIVSW 575

Query: 523 GSLMAACRVHGE----IELAEFAAKQLLQLD 549
            S++     HG+    +E+ +    Q L LD
Sbjct: 576 NSMITGYGQHGDAKKALEVFQIMQNQGLPLD 606



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 193/420 (45%), Gaps = 49/420 (11%)

Query: 17  TAISSCSS---LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           TA+  CS    L   KQ H  ++K  +          + + T+  +  +  SS+  A  +
Sbjct: 311 TALKLCSQQRELNFTKQLHCGVVKNGYE-------FAQDIRTALMVTYSKCSSVDEAFKL 363

Query: 74  FSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           FS   A  + V+    I     ++  K A+ +F +M  EG+  + F++  +L    +   
Sbjct: 364 FSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAG--KPSS 421

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           LL   Q+H    K  +   P V T L+  Y   G ++++  +F  +  +DIV WS M+ G
Sbjct: 422 LLS--QLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTG 479

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVAL 251
             Q    ++ + +F ++    V+P+E   S +++ACS  A  + +G+ +H   + +  + 
Sbjct: 480 LAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSN 539

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
              + S L+TMY+  G ++ A+ +F +   +++V   +M++GY   GQ  DA+       
Sbjct: 540 ALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGY---GQHGDAK------- 589

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
                                +AL++F  MQ  G+  D VT + V++AC H G++++ ++
Sbjct: 590 ---------------------KALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEK 628

Query: 372 -IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
             ++ I            + ++D+Y++ G  + A ++   M    +   W +++ A  +H
Sbjct: 629 YFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVH 688


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/604 (37%), Positives = 358/604 (59%), Gaps = 23/604 (3%)

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
           +A A+ L +  ++ G G +     D      ++  YG   ++  A  +F ++  R+   W
Sbjct: 183 LAEAQELFD--RIGGAGDR-----DATACNAMIAAYGKNARVDLAEGLFAQIKLRNAASW 235

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           S+++  Y QNG  D     F+ M     + D +  + + +  S  G L     +  ++  
Sbjct: 236 SLLLLTYAQNGHLDLAKKSFDRMP----QRDSIAFTAMTAVLSDQGELRGAREMLRYL-- 289

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKV---LLKNLVVSTAMVSGYSRAGQVEDA 303
              A+D    + L+  Y+  G +D  + LF  +    +   VV+  +V+ Y + G+V+DA
Sbjct: 290 --SAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVNLYGKCGRVDDA 347

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
           R + D M  +  + W+AMI+ YA+N +  EA+ LF  M + G +P  +T++SV+ +CA L
Sbjct: 348 RRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVL 407

Query: 364 GVLDQAQRIHLYIDKNA-FGGDLRVNNAIIDMYAKCGSLESAREVFER--MRRRNVISWT 420
           G L   +RIH  I  +  F   L + NA+I MY KCG+LE AREVFE   +R R+V++WT
Sbjct: 408 GTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWT 467

Query: 421 SMINAFAIHGDARNALIFFNKMK-DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           +MI A+A +G    A+  F +M  D   +PN VTF+ VL ACSH G +++  E F SM  
Sbjct: 468 AMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVTFLSVLSACSHLGQLEQAWEHFCSMGP 527

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELV-ETMPFAPNVVIWGSLMAACRVHGEIELA 538
           ++ +PP  +HY C+VDL GRA  L EA +L+     F  +VV W + ++AC+++G++E +
Sbjct: 528 DFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERS 587

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
           + AAK++ +L+P++    VLLSN+YA   R  DV  +R  MK  G+ K    S IE+NN 
Sbjct: 588 QRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNR 647

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           V+EF+ +D SH +  +IY +L  +  E+K AGYVPD    L D+++E+K +++ +HSE+L
Sbjct: 648 VHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKAQLLGYHSERL 707

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+  G+IS+   + +R+VKNLRVC DCH   K +S++  R+I++RD +RFHH+KDGVCSC
Sbjct: 708 AMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSC 767

Query: 719 KDYW 722
            DYW
Sbjct: 768 GDYW 771



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/478 (21%), Positives = 208/478 (43%), Gaps = 74/478 (15%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACG------------- 166
           F   ++A A    L E   +H    +   G +  +   L+ ++G CG             
Sbjct: 10  FEERIRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVR 69

Query: 167 ------------------KILDARLMFDKM------------------------------ 178
                             +I DAR +FD M                              
Sbjct: 70  LPNEYSWSCIIQAYVSSSRIHDARALFDSMPGFDAFTWNIMIAAYARINRLDDARELFHG 129

Query: 179 --SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
             S RD+V W++++ GY ++   +E   LF  M +     D +  + +L   +  G+L+ 
Sbjct: 130 MISGRDVVSWAILVAGYARHDRLEEASALFRRMPLW----DTVTCTSVLQGYAHNGHLAE 185

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
            + + +  I      DA   + +I  Y     +D+A+GLF ++ L+N    + ++  Y++
Sbjct: 186 AQELFDR-IGGAGDRDATACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTYAQ 244

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
            G ++ A+  FD+M ++D I ++AM +  ++    + A ++   +       D +   ++
Sbjct: 245 NGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGAREMLRYLSAV----DVIAWNAL 300

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           +   +  G LD+ +R+   ++       + V   ++++Y KCG ++ AR V + M  R  
Sbjct: 301 LEGYSRTGDLDEVRRLFSAMEHRTVATTV-VAGTLVNLYGKCGRVDDARRVLDAMPVRTS 359

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           +SWT+MI A+A +G+A  A+  F  M  E  +P+ +T I V+ +C+  G +  G+ I A 
Sbjct: 360 VSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHAR 419

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF-APNVVIWGSLMAACRVHG 533
           + +             ++ ++G+   L  A E+ E++P    +VV W +++ A   +G
Sbjct: 420 IRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNG 477


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/652 (34%), Positives = 358/652 (54%), Gaps = 34/652 (5%)

Query: 73   IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
            +F Q+P       N  + +     R   AL +   M+  G +++  +F   L A    E 
Sbjct: 419  VFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEF 478

Query: 133  LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
              +G  +HGL    G   +  +   LV MYG  G +  +R +  +M  RD+V W+ +I G
Sbjct: 479  FDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGG 538

Query: 193  YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL-SYGEAVHEFIIDNNVAL 251
            Y +N   D+ L  F+ +++  V  + + +  +LSAC   G+L   G+ +H +I+      
Sbjct: 539  YAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFES 598

Query: 252  DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
            D H++++LITMYA C                               G +  ++ +F+ + 
Sbjct: 599  DEHVKNSLITMYAKC-------------------------------GDLSSSQDLFNGLD 627

Query: 312  EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
             + +I W+A+++  A + H +E LKL ++M+  G+  D+ +    +SA A L VL++ Q+
Sbjct: 628  NRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQ 687

Query: 372  IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
            +H    K  F  D  + NA  DMY+KCG +    ++      R++ SW  +I+A   HG 
Sbjct: 688  LHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGY 747

Query: 432  ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
                   F++M +  I P  VTF+ +L ACSH GLVD+G   +  +  ++ + P  EH  
Sbjct: 748  FEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCI 807

Query: 492  CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
            C++DL GR+  L EA   +  MP  PN ++W SL+A+C++H +++    AA+ L +L+P+
Sbjct: 808  CVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPE 867

Query: 552  HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQ 611
             D   VL SN++A   RW+DV  +RK M  + I K++ACS +++ ++V  F   DR+H Q
Sbjct: 868  DDSVFVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQ 927

Query: 612  TDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW-HSEKLALCYGLISSKKD 670
            T +IY KL ++   +K +GYV D   AL D  DEE++E  LW HSE+LAL Y L+S+ + 
Sbjct: 928  TMEIYAKLEDIKKLIKESGYVADTSQALQD-TDEEQKEHNLWNHSERLALAYALMSTPEG 986

Query: 671  SCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            S +RI KNLR+C DCH+  K VS+V  R IV+RD+ RFHH++ G+CSCKDYW
Sbjct: 987  STVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFESGLCSCKDYW 1038



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 233/497 (46%), Gaps = 40/497 (8%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           YA  IF+QI    +   N  + A + +   + + ++F  M      ++  +   +L  + 
Sbjct: 314 YANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLG 373

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
             +    G  +HGL  K+GF S   V   L+ MY   G+  +A L+F +M  +D++ W+ 
Sbjct: 374 DVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNS 433

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           ++  +  +G   + L +   M  +    + +  +  L+AC        G  +H  ++   
Sbjct: 434 LMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVV--- 490

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
                                    GLFD     N ++  A+VS Y + G +  +R +  
Sbjct: 491 -----------------------VSGLFD-----NQIIGNALVSMYGKIGGMSTSRRVLL 522

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG-VLD 367
           QM  +D++ W+A+I GYAEN  P +AL  F  ++V G+  + +T++SV+SAC   G +L+
Sbjct: 523 QMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLE 582

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           + + +H YI    F  D  V N++I MYAKCG L S++++F  +  R++I+W +++ A A
Sbjct: 583 RGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANA 642

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
            HG     L   +KM+   +  +  +F   L A +   +++EG+++   +  +       
Sbjct: 643 HHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHG-LAVKLGFELDC 701

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVI--WGSLMAACRVHGEIELAEFAAKQL 545
             +    D++ +     E  E+V+ +P + N  +  W  L++A   HG  E       ++
Sbjct: 702 FIFNAAADMYSKCG---EIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEM 758

Query: 546 LQL--DPDHDGALVLLS 560
           L++   P H   + LL+
Sbjct: 759 LEMGIKPGHVTFVSLLT 775



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 136/595 (22%), Positives = 263/595 (44%), Gaps = 89/595 (14%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYY-------ALSIFSQI 77
           L+   QT    +    +  + ++L +K L+    L T T  ++Y        A  +F ++
Sbjct: 60  LSCFDQTGFSQITRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKM 119

Query: 78  PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL-EG 136
           P       N  +  I         ++ F KM + G+    F    ++ A  R+  +  EG
Sbjct: 120 PVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREG 179

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
           +QVHG   K G  SD +V T ++ +YG  G +  +R +F++M  R++V W+ ++ GY   
Sbjct: 180 VQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDK 239

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS--------------------------- 229
           G  +EV+++++ M+   VE +E  +S ++S+C                            
Sbjct: 240 GEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVE 299

Query: 230 --------RAGNLSYGEAVHEFIIDNNV----------ALDAHLQ--------------- 256
                     GN+ Y   +   I + +           A + H++               
Sbjct: 300 NSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDE 359

Query: 257 ---STLITMYANCGCMDMAK------GLFDKVLLKNLV-VSTAMVSGYSRAGQVEDARLI 306
              +T+ T+ +  G +D  K      GL  K+   ++V V   ++  Y+ AG+ E+A L+
Sbjct: 360 VNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLV 419

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F QM  KDLI W+++++ +  +    +AL +   M   G   + VT  S ++AC      
Sbjct: 420 FKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFF 479

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           D+ + +H  +  +    +  + NA++ MY K G + ++R V  +M RR+V++W ++I  +
Sbjct: 480 DKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGY 539

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG-LVDEGREIFASMTNEYNIPP 485
           A + D   AL  F  ++ E +  N +T + VL AC   G L++ G+ + A     Y +  
Sbjct: 540 AENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHA-----YIVSA 594

Query: 486 KYEH----YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
            +E        ++ ++ +   L  + +L   +    +++ W +++AA   HG  E
Sbjct: 595 GFESDEHVKNSLITMYAKCGDLSSSQDLFNGLD-NRSIITWNAILAANAHHGHGE 648


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/732 (32%), Positives = 386/732 (52%), Gaps = 65/732 (8%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +  +P  +     +S C+ +   +  H+ +         + S L + L+ S +L     +
Sbjct: 222 EGVRPARITLVITLSVCAKIRQARAIHSIV---------RESGLEQTLVVSTAL-----A 267

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWS----------HRPKHALKVFLKMLNEGLTI 115
           S Y  L    Q      R + + +  +SW+          H  + AL +F +ML+EG+  
Sbjct: 268 SAYARLGHLDQAKEVFDRAAERDV--VSWNAMLGAYAQHGHMSEAAL-LFARMLHEGIPP 324

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
            + +   ++ A      L  G  +H    + G   D  +   L+ MY  CG   +AR +F
Sbjct: 325 SKVT---LVNASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLF 381

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS----RA 231
           + +   + V W+ MI G  Q G     L LF+ M++  + P       +L A +     A
Sbjct: 382 EGIPG-NAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEA 440

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
             ++ G  +H  I+    A +  + + ++ MYA+CG +D A   F +             
Sbjct: 441 RAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQR------------- 487

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
                 G +ED           D++ W+A+IS  +++ H + AL  F  M + G+ P+++
Sbjct: 488 ------GAMED---------RHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQI 532

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
           T ++V+ ACA    L +   +H ++  +    ++ V  A+  MY +CGSLESARE+FE++
Sbjct: 533 TCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKV 592

Query: 412 R-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
              R+V+ + +MI A++ +G A  AL  F +M+ E   P+  +F+ VL ACSH GL DEG
Sbjct: 593 AVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEG 652

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
            EIF SM   Y I P  +HY C VD+ GRA  L +A EL+  M   P V++W +L+ ACR
Sbjct: 653 WEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACR 712

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
            + +++    A   + +LDP  + A V+LSNI A   +W +  E+R  M+ RG+ K+   
Sbjct: 713 KYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKQAGK 772

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
           S IE+ + V+EF+  DRSH ++++IY +L  + +E++  GYVPD    L  +++ EK  +
Sbjct: 773 SWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERL 832

Query: 651 ILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHH 710
           +  HSE+LA+  G++SS  D+ +R++KNLRVCEDCHN  K +SK+  +EIV+RD  RFHH
Sbjct: 833 LCQHSERLAIALGVMSSSTDT-VRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHH 891

Query: 711 YKDGVCSCKDYW 722
           + DG CSC DYW
Sbjct: 892 FVDGSCSCGDYW 903



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 157/638 (24%), Positives = 282/638 (44%), Gaps = 104/638 (16%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV 84
           L+  ++ HA+I+ L       N LL +L L   SL             +FS++       
Sbjct: 45  LSQGRRIHARIVSLGLEEELGNHLL-RLYLKCESLGDVEE--------VFSRLEVRDEAS 95

Query: 85  SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
               I A +   + K A+ +F +M  EG+  D  +F  +LKA AR   L +G  +H    
Sbjct: 96  WTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIV 155

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           + G      +   L+ +YG+CG +  A L+F++M  RD+V W+  I    Q+G  D  L 
Sbjct: 156 ESGLEGKSVLANLLLHIYGSCGCVASAMLLFERME-RDLVSWNAAIAANAQSGDLDMALE 214

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           LF+ M++  V P  + L   LS C++   +    A+H  + ++ +     + + L + YA
Sbjct: 215 LFQRMQLEGVRPARITLVITLSVCAK---IRQARAIHSIVRESGLEQTLVVSTALASAYA 271

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM-------------- 310
             G +D AK +FD+   +++V   AM+  Y++ G + +A L+F +M              
Sbjct: 272 RLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVN 331

Query: 311 ----------------------VEKDLICWSAMISGYAENNHPQE--------------- 333
                                 +++D++  +A++  Y     P+E               
Sbjct: 332 ASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPGNAVSW 391

Query: 334 ---------------ALKLFNEMQVCGMKPDKVTMLSVISACA----HLGVLDQAQRIHL 374
                          AL+LF  MQ+ GM P + T L+++ A A        + + +++H 
Sbjct: 392 NTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHS 451

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR---RRNVISWTSMINAFAIHGD 431
            I    +  +  +  A++ MYA CG+++ A   F+R     R +V+SW ++I++ + HG 
Sbjct: 452 RIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGH 511

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN---EYNIPPKYE 488
            + AL FF +M    + PN +T + VL AC+ A  + EG  +   + +   E N+     
Sbjct: 512 GKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVAT- 570

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
               +  ++GR   L  A E+ E +    +VVI+ +++AA   +G   LA  A K   ++
Sbjct: 571 ---ALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNG---LAGEALKLFWRM 624

Query: 549 D-----PDHDGALVLLSNIY---AKDKRWQDVGELRKS 578
                 PD    + +LS        D+ W+    +R+S
Sbjct: 625 QQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQS 662



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 129/463 (27%), Positives = 222/463 (47%), Gaps = 49/463 (10%)

Query: 121 PPILKAIARAEG----LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176
           P  L  + RA G    L +G ++H     LG   +  +   L+ +Y  C  + D   +F 
Sbjct: 29  PAHLVRLLRAAGDDRLLSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFS 86

Query: 177 KMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
           ++  RD   W+ +I  Y ++G     + +F  M+   V  D +    +L AC+R G+LS 
Sbjct: 87  RLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQ 146

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G ++H +I+++ +   + L + L+ +Y +CGC                 V++AM      
Sbjct: 147 GRSIHAWIVESGLEGKSVLANLLLHIYGSCGC-----------------VASAM------ 183

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
                   L+F++M E+DL+ W+A I+  A++     AL+LF  MQ+ G++P ++T++  
Sbjct: 184 --------LLFERM-ERDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVIT 234

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           +S CA    + QA+ IH  + ++     L V+ A+   YA+ G L+ A+EVF+R   R+V
Sbjct: 235 LSVCAK---IRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDV 291

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           +SW +M+ A+A HG    A + F +M  E I P+ VT +     CS       GR I A 
Sbjct: 292 VSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSSLRF---GRMIHAC 348

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE 536
              E  +         ++D++ R     EA  L E +P   N V W +++A     G+++
Sbjct: 349 AL-EKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIP--GNAVSWNTMIAGSSQKGQMK 405

Query: 537 --LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
             L  F   QL  + P     L LL  + +  +  + + E RK
Sbjct: 406 RALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRK 448


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/643 (35%), Positives = 358/643 (55%), Gaps = 42/643 (6%)

Query: 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175
           D F    +L   A+   L +   V    TK     D +    L+  Y   G + +  ++F
Sbjct: 57  DSFIHNQLLHLYAKFGKLSDAQNVFDNMTK----RDVYSWNTLLSAYAKMGMVENLHVVF 112

Query: 176 DKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235
           D+M YRD V ++ +I  +  NG   + L +   M+    +P +      L ACS+  +L 
Sbjct: 113 DQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLR 172

Query: 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295
           +G+ +H  I+  ++  +  +++ +  MYA CG +D A+ LFD ++ KN+V    M+SGY 
Sbjct: 173 HGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYV 232

Query: 296 -----------------------------------RAGQVEDARLIFDQMVEKDLICWSA 320
                                              R G+V+DAR +F ++ +KD ICW+ 
Sbjct: 233 KMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTT 292

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA 380
           MI GYA+N   ++A  LF +M    +KPD  T+ S++S+CA L  L   Q +H  +    
Sbjct: 293 MIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMG 352

Query: 381 FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFN 440
               + V++A++DMY KCG    AR +FE M  RNVI+W +MI  +A +G    AL  + 
Sbjct: 353 IDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYE 412

Query: 441 KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500
           +M+ E+  P+ +TF+GVL AC +A +V EG++ F S++ E+ I P  +HY CM+ L GR+
Sbjct: 413 RMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSIS-EHGIAPTLDHYACMITLLGRS 471

Query: 501 NLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560
             + +A++L++ MP  PN  IW +L++ C   G+++ AE AA  L +LDP + G  ++LS
Sbjct: 472 GSVDKAVDLIQGMPHEPNYRIWSTLLSVC-AKGDLKNAELAASHLFELDPRNAGPYIMLS 530

Query: 561 NIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLN 620
           N+YA   RW+DV  +R  MKE+   K  A S +E+ N+V+ F++ D  H +  +IY +LN
Sbjct: 531 NLYAACGRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELN 590

Query: 621 EVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKD-SCIRIVKNL 679
            +IS L+  GY PD +  L ++ +EEK   I +HSEKLAL + LI      + IRI+KN+
Sbjct: 591 RLISILQQIGYNPDTNIVLHNVGEEEKFRSISYHSEKLALAFALIRKPNGVAPIRIIKNI 650

Query: 680 RVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           RVC+DCH F+K  S   +R I++RD  RFHH+  G CSC D W
Sbjct: 651 RVCDDCHVFMKFASITISRPIIMRDSNRFHHFFGGKCSCNDNW 693



 Score =  175 bits (444), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 201/401 (50%), Gaps = 41/401 (10%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F Q+P   S   N  I   + +     ALKV ++M  +G    ++S    L+A ++   
Sbjct: 111 VFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLD 170

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L  G Q+HG       G + FV+  +  MY  CG I  ARL+FD M  +++V W++MI G
Sbjct: 171 LRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISG 230

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI-------- 244
           Y + G  +E ++LF EM++S ++PD + +S +L+A  R G +   +A + FI        
Sbjct: 231 YVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVD--DARNLFIKLPKKDEI 288

Query: 245 -------------------------IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
                                    +  NV  D++  S++++  A    +   + +  KV
Sbjct: 289 CWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKV 348

Query: 280 LL----KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           ++     +++VS+A+V  Y + G   DAR+IF+ M  +++I W+AMI GYA+N    EAL
Sbjct: 349 VVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEAL 408

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
            L+  MQ    KPD +T + V+SAC +  ++ + Q+    I ++     L     +I + 
Sbjct: 409 TLYERMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSISEHGIAPTLDHYACMITLL 468

Query: 396 AKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNA 435
            + GS++ A ++ + M    N   W+++++  A  GD +NA
Sbjct: 469 GRSGSVDKAVDLIQGMPHEPNYRIWSTLLSVCA-KGDLKNA 508



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 31/227 (13%)

Query: 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE-------------- 327
           K+  +   ++  Y++ G++ DA+ +FD M ++D+  W+ ++S YA+              
Sbjct: 56  KDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQM 115

Query: 328 -----------------NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQ 370
                            N H  +ALK+   MQ  G +P + + ++ + AC+ L  L   +
Sbjct: 116 PYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGK 175

Query: 371 RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
           +IH  I     G +  V NA+ DMYAKCG ++ AR +F+ M  +NV+SW  MI+ +   G
Sbjct: 176 QIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMG 235

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
           +    +  FN+M+   + P+ VT   VL A    G VD+ R +F  +
Sbjct: 236 NPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKL 282



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 2/246 (0%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A ++F ++P          I   + + R + A  +F  ML   +  D ++   ++ + A+
Sbjct: 275 ARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAK 334

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G  VHG    +G  +   V + LV MY  CG  LDAR++F+ M  R+++ W+ M
Sbjct: 335 LASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAM 394

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY QNG   E L L+E M+  N +PD +    +LSAC  A  +  G+   + I ++ +
Sbjct: 395 ILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSISEHGI 454

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLIFD 308
           A      + +IT+    G +D A  L   +  + N  + + ++S  ++ G +++A L   
Sbjct: 455 APTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSVCAK-GDLKNAELAAS 513

Query: 309 QMVEKD 314
            + E D
Sbjct: 514 HLFELD 519


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/588 (38%), Positives = 348/588 (59%), Gaps = 17/588 (2%)

Query: 143 GTKLGFGSDPFVQTG-----LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           G +  F S P   T      L G   A G++ DAR +FD++   D+V ++ ++  +F +G
Sbjct: 35  GAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASG 94

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH-EFIIDNNVALDAHLQ 256
             D    LF  M + +V       + ++S  S++G +   + V     + N+V+ +A   
Sbjct: 95  DADGARRLFASMPVRDVAS----WNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNA--- 147

Query: 257 STLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
             +++ +A  G M  A+  F     K + V+ TAMVSGY   G V  A   F+ M  ++L
Sbjct: 148 --MVSGFACSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNL 205

Query: 316 ICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           + W+A+++GY +N+H  +AL+LF  M +   ++P+  T+ SV+  C++L  L   ++IH 
Sbjct: 206 VSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQ 265

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           +  K     +L V  +++ MY KCG L SA  +F  M  R+V++W +MI+ +A HGD + 
Sbjct: 266 WCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKE 325

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
           A+  F +MKDE ++PN +TF+ VL AC H GL D G + F  M   Y I P+ +HY CMV
Sbjct: 326 AINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMV 385

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DL  RA  L  A++ + +MPF P+   +G+L+AACRV+  +E AE AA +L++ DP   G
Sbjct: 386 DLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAG 445

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
           A V L+NIYA   +W DV  +R+ MK+  ++K    S IE+   ++EF + DR H Q   
Sbjct: 446 AYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYL 505

Query: 615 IYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIR 674
           I+EKL ++   +K  GYVPD+   L D+++  K ++++ HSEKLA+ +GLIS+     +R
Sbjct: 506 IHEKLGQLAERMKEMGYVPDLDFVLHDVDETMKVQMLMRHSEKLAIAFGLISTAHGMTLR 565

Query: 675 IVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           I KNLRVC DCHN  K++S +  REI++RD TRFHH++ G CSC DYW
Sbjct: 566 IFKNLRVCGDCHNAAKVISMIEDREIILRDTTRFHHFRGGHCSCDDYW 613



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 1/169 (0%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIA 128
           A+  F  +P       N  +     +     AL++F  M+ E  +  +  +   +L   +
Sbjct: 193 AIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCS 252

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
               L  G Q+H    KL    +  V T LV MY  CG +  A ++F +M  RD+V W+ 
Sbjct: 253 NLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNA 312

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237
           MI GY Q+G   E +NLFE MK   VEP+ +    +L+AC   G   +G
Sbjct: 313 MISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFG 361



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 103/249 (41%), Gaps = 21/249 (8%)

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN-NHPQEALKLFNEMQVC 344
           +STA V+   R G +  A   F     K    ++ +++GYA       +A  LF+ +   
Sbjct: 19  LSTAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPT- 77

Query: 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
              PD V+  +++      G  D A+R+   +       D+   N ++   +K G++E A
Sbjct: 78  ---PDVVSYNTLLLCHFASGDADGARRLFASMPVR----DVASWNTMVSGLSKSGAVEEA 130

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
           + VF  M  RN +SW +M++ FA  GD   A  +F    ++           VL+    +
Sbjct: 131 KVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPEKE--------DAVLWTAMVS 182

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM----PFAPNVV 520
           G +D G  + A    E         +  +V  + + +   +AL L  TM       PN  
Sbjct: 183 GYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNAS 242

Query: 521 IWGSLMAAC 529
              S++  C
Sbjct: 243 TLSSVLLGC 251


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/622 (36%), Positives = 366/622 (58%), Gaps = 26/622 (4%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDP--FVQTGLVGMYGACGKILDARLMFDK 177
           F  +L+  +RA  L  G Q+H      G  S P  F++  L+ +YG+C     AR +FD+
Sbjct: 23  FRSLLRQCSRATALRPGQQLHATAIVTGLISSPNHFLRNALLHLYGSCSLPSHARKLFDE 82

Query: 178 M--SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR--AGN 233
           +  S++D V ++ +I    ++    E L LF +M+  ++  D +V+   L+AC+R   G+
Sbjct: 83  IPQSHKDSVDYTALI----RHCPPFESLKLFIQMRQFDLPLDGVVMVCALNACARLGGGD 138

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
              G  +H  ++         + + L+ +Y   G +  A+ +F+ + ++++V  +  + G
Sbjct: 139 TKVGSQMHVGVVKFGFVKFDKVCNALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFLEG 198

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPDKVT 352
             +   VE  R++FD+M E++ + W+ MI GY  N   +EA  L  EM   CG +   VT
Sbjct: 199 LVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVT 258

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNA---FGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           + SV+SAC+  G +   + +H Y  K     FG  + V  +++DMYAKCG + +A  VF 
Sbjct: 259 LCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFG--VMVGTSLVDMYAKCGRINAALSVFR 316

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            M +RNV++W +M+   A+HG  + A+  F  M +E + P+GVTF+ +L ACSH+GLV++
Sbjct: 317 SMLKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVEE-VKPDGVTFMALLSACSHSGLVEK 375

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G + F  +   Y I P+ EHY CMV L GRA  L EA  +V+ M   PN V+ GSL+ +C
Sbjct: 376 GWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRLEEAEIMVKNMRIPPNEVVLGSLIGSC 435

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
             HG ++L E   + LL++DP +    ++LSN+YA   + +    LR+ +K+RGI K   
Sbjct: 436 YAHGRLQLGEKIMRDLLEMDPLNTEYHIVLSNMYALSGKVEKANSLRQVLKKRGIKKVPG 495

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV----DLED- 644
            S I ++ ++++F+  D+SH +T +IY KL+E+I  L+ AGYVP+    ++    + +D 
Sbjct: 496 MSSIYVDGKLHQFIAGDKSHTRTSEIYMKLDEMICRLRSAGYVPNTSCQVLFGCSNRDDC 555

Query: 645 ----EEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
               EE  +V+  HSEKLALC+GL+S+   S + I KNLR+C+DCH+ IK+ SKVY REI
Sbjct: 556 SESLEEVEQVLFTHSEKLALCFGLMSTPSGSPLHIFKNLRICQDCHSAIKIASKVYKREI 615

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           V+RDR RFH +K G CSC DYW
Sbjct: 616 VVRDRYRFHSFKHGSCSCSDYW 637


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/620 (36%), Positives = 345/620 (55%), Gaps = 34/620 (5%)

Query: 101  ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
             LK+  ++L  G  ++  +F   L A +  E L+E   VH L    GF     V   LV 
Sbjct: 483  GLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVT 542

Query: 161  MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
            MYG  G +++A+ +   M   D V W+ +I G+ +N   +E +  ++ ++   +  + + 
Sbjct: 543  MYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYIT 602

Query: 221  LSKILSACSRAGNL-SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
            +  +L ACS   +L  +G  +H  I+      D +++++LITMYA C             
Sbjct: 603  MVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKC------------- 649

Query: 280  LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
                              G +  +  IFD +  K  I W+AM++  A +   +EALK+F 
Sbjct: 650  ------------------GDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFG 691

Query: 340  EMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
            EM+  G+  D+ +    ++A A+L VL++ Q++H  + K  F  DL V NA +DMY KCG
Sbjct: 692  EMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCG 751

Query: 400  SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459
             +    ++  +   R+ +SW  +I+AFA HG  + A   F++M      P+ VTF+ +L 
Sbjct: 752  EMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLS 811

Query: 460  ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
            AC+H GLVDEG   + SMT E+ + P  EH  C++DL GR+  L  A   ++ MP  PN 
Sbjct: 812  ACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPND 871

Query: 520  VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579
            + W SL+AACR+HG +ELA   A+ LL+LDP  D A VL SN+ A   +W+DV  LRK M
Sbjct: 872  LAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEM 931

Query: 580  KERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSAL 639
                I K+ ACS +++ ++V+ F   ++ H Q  +I  KL E++   K AGYVPD   AL
Sbjct: 932  GSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFAL 991

Query: 640  VDLEDEEKREVILW-HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAR 698
             D+ DEE++E  LW HSE+LAL +GLI++ + S +RI KNLRVC DCH+  K VS +  R
Sbjct: 992  HDM-DEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGR 1050

Query: 699  EIVIRDRTRFHHYKDGVCSC 718
            +IV+RD  RFHH+  G CSC
Sbjct: 1051 KIVLRDPYRFHHFSGGKCSC 1070



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 215/450 (47%), Gaps = 45/450 (10%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL-EGMQVHGLGTKLGFGSDPFVQTG 157
           + A+ +F +M   G+  + F    ++ A +R+  +  EG QVHG   K G   D +V T 
Sbjct: 177 EEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTA 236

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           LV  YG+ G + +A+ +F++M   ++V W+ ++ GY  +G   EVLN+++ M+   V  +
Sbjct: 237 LVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGN 296

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           +   + + S+C    +   G  V   II                            G  D
Sbjct: 297 QNTFATVTSSCGLLEDQVLGYQVLGHIIQ--------------------------YGFED 330

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
            V + N     +++S +S    VE+A  +FD M E D+I W+AMIS YA +   +E+L+ 
Sbjct: 331 SVSVAN-----SLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRC 385

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F+ M+    + +  T+ S++S C+ +  L   + IH  + K     ++ + N ++ +Y++
Sbjct: 386 FHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSE 445

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
            G  E A  VF+ M  R++ISW SM+  +   G   + L    ++       N VTF   
Sbjct: 446 AGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASA 505

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHY----GCMVDLFGRANLLREALELVETM 513
           L ACS+   + E + + A +     I   +  +      +V ++G+  ++ EA ++++TM
Sbjct: 506 LAACSNPECLIESKIVHALI-----IVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTM 560

Query: 514 PFAPNVVIWGSLMAACRVHGEIELAEFAAK 543
           P  P+ V W +L+     H E E    A K
Sbjct: 561 P-QPDRVTWNALIGG---HAENEEPNEAVK 586



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 190/396 (47%), Gaps = 31/396 (7%)

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
           +Y A  +F ++P          +   S S  P   L V+ +M  EG++ ++ +F  +  +
Sbjct: 247 VYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSS 306

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
               E  + G QV G   + GF     V   L+ M+ +   + +A  +FD M+  DI+ W
Sbjct: 307 CGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISW 366

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + MI  Y  +GL  E L  F  M+  + E +   LS +LS CS   NL +G  +H  ++ 
Sbjct: 367 NAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVV- 425

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
             + LD+                             N+ +   +++ YS AG+ EDA L+
Sbjct: 426 -KLGLDS-----------------------------NVCICNTLLTLYSEAGRSEDAELV 455

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F  M E+DLI W++M++ Y ++    + LK+  E+   G   + VT  S ++AC++   L
Sbjct: 456 FQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECL 515

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
            +++ +H  I    F   L V NA++ MY K G +  A++V + M + + ++W ++I   
Sbjct: 516 IESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGH 575

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462
           A + +   A+  +  ++++ I  N +T + VL ACS
Sbjct: 576 AENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 611



 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 172/355 (48%), Gaps = 37/355 (10%)

Query: 103 KVFLKMLNEGLTI---DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           KVFL+  +    I   +  +FP  LK  +     + G  +H            F    L+
Sbjct: 79  KVFLQQQHTDYGIRCLNAVNFP--LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLI 136

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
            MY   G I  AR +FD+M +R+   WS M+ GY + GL++E + LF +M    VEP+  
Sbjct: 137 NMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGF 196

Query: 220 VLSKILSACSRAGNLS-YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
           +++ +++ACSR+G ++  G  VH F++   +  D ++ + L+  Y + G +  A+ LF++
Sbjct: 197 MVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEE 256

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +   N+V  T+++ GYS +G                               +P E L ++
Sbjct: 257 MPDHNVVSWTSLMVGYSDSG-------------------------------NPGEVLNVY 285

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
             M+  G+  ++ T  +V S+C  L       ++  +I +  F   + V N++I M++  
Sbjct: 286 QRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSF 345

Query: 399 GSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
            S+E A  VF+ M   ++ISW +MI+A+A HG  R +L  F+ M+    + N  T
Sbjct: 346 SSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTT 400



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 163/366 (44%), Gaps = 36/366 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +   +P P     N  I   + +  P  A+K +  +  +G+  +  +   +L A + 
Sbjct: 553 AKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSA 612

Query: 130 AEGLLE-GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
            + LL+ GM +H      GF SD +V+  L+ MY  CG +  +  +FD +  +  + W+ 
Sbjct: 613 PDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNA 672

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           M+     +G  +E L +F EM+   V  D+   S  L+A +    L  G+ +H  +I   
Sbjct: 673 MVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLG 732

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D H+ +  + MY  C                               G++ D   +  
Sbjct: 733 FESDLHVTNAAMDMYGKC-------------------------------GEMHDVLKMLP 761

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           Q + +  + W+ +IS +A +   Q+A + F+EM   G KPD VT +S++SAC H G++D+
Sbjct: 762 QPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDE 821

Query: 369 AQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINA 425
               +  + +  FG    + +   IID+  + G L  A    + M    N ++W S++ A
Sbjct: 822 GLAYYDSMTRE-FGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAA 880

Query: 426 FAIHGD 431
             IHG+
Sbjct: 881 CRIHGN 886


>gi|359493563|ref|XP_002269754.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71420-like [Vitis vinifera]
          Length = 741

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/665 (35%), Positives = 368/665 (55%), Gaps = 44/665 (6%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
            SL YA  +F ++P          +   +   R     +VF  ML      + F+F  ++
Sbjct: 114 GSLDYAHQMFDEMPEKNIVSWTALVSGYAQHGRSNECFRVFRGMLIWHQPTE-FAFASVI 172

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY-GACGKILDARLMFDKMSYRDI 183
            A    +    G QVH L  K  F S  +V   L+ MY  +CG   +A  +++ M +R++
Sbjct: 173 SACGGDDNC--GRQVHALALKTSFDSCVYVGNALIMMYCKSCGGADEAWNVYEAMGFRNL 230

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           V W+ MI G+   G  +  L LF +M +  +  D   L  I S     G+          
Sbjct: 231 VSWNSMIAGFQVCGCGNRALELFSQMHVGGIRFDRATLVSIFSCLCGMGD---------- 280

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR-AGQVED 302
                  L+   Q           C+ +  G   K+      V+TA+V  YS   G+V D
Sbjct: 281 ------GLECCFQLQ---------CLTIKTGFILKI-----EVATALVKAYSSLGGEVSD 320

Query: 303 ARLIFDQM-VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
              IF ++   +D++ W+ +I+ +AE + P++AL +F +     + PD+     V+ ACA
Sbjct: 321 CYRIFLELDGRQDVVSWTGIIAAFAERD-PKKALVIFRQFLRECLAPDRHMFSIVLKACA 379

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
            L     A  +  ++ K  F  D+ + NA+I   A+CGS+  +++VF++M  R+ +SW S
Sbjct: 380 GLATERHALTVQSHVLKVGFEDDIVLANALIHACARCGSVALSKQVFDKMGSRDTVSWNS 439

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           M+ A+A+HG  + AL+ F++M  +   P+G TF+ +L ACSHAG+ +EG +IF +M+N +
Sbjct: 440 MLKAYAMHGQGKEALLLFSQMDAQ---PDGATFVALLSACSHAGMAEEGAKIFETMSNNH 496

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
            I P+ +HY CMVD+ GRA  + EA EL++ MP  P+ V+W +L+ +CR HGE +LA+ A
Sbjct: 497 GIVPQLDHYACMVDILGRAGQISEAKELIDKMPMEPDSVVWSALLGSCRKHGETKLAKLA 556

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
           A +L +LDP++    VL+SNI+  D R+ +   +R+ M+ + + KE   S IE+ N+V+E
Sbjct: 557 AVKLKELDPNNSLGYVLMSNIFCTDGRFNEARLIRREMEGKIVRKEPGLSWIEVGNQVHE 616

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALC 661
           F +  + H + + I  +L E++  LK  GYVP I  AL D+EDE K E + +HSEKLAL 
Sbjct: 617 FASGGQQHPEKEAICARLEELVRRLKDLGYVPQISLALHDIEDEHKEEQLYYHSEKLALA 676

Query: 662 YGLISSKKDSC----IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCS 717
           + L++     C    I+I+KN+R+C DCHNF+KL S++   EIV+RD  RFHH+K  VCS
Sbjct: 677 FALMNVGSICCSGNTIKIMKNIRICVDCHNFMKLASELVDMEIVVRDSNRFHHFKAKVCS 736

Query: 718 CKDYW 722
           C DYW
Sbjct: 737 CNDYW 741



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 121/479 (25%), Positives = 211/479 (44%), Gaps = 57/479 (11%)

Query: 89  IRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLG 147
           IR +      + ALK+F  +     L     ++  + +A AR   L EG  +H    +  
Sbjct: 34  IRLLCSRGHLQEALKLFYSITPPPPLVHSHHTYAALFQACARRSSLPEGQALH----RHM 89

Query: 148 FGSDP------FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201
           F  +P      F+   +V MY  CG +  A  MFD+M  ++IV W+ ++ GY Q+G  +E
Sbjct: 90  FLHNPNSDFNLFLTNHVVNMYAKCGSLDYAHQMFDEMPEKNIVSWTALVSGYAQHGRSNE 149

Query: 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261
              +F  M + + +P E   + ++SAC   G+ + G  VH   +  +     ++ + LI 
Sbjct: 150 CFRVFRGMLIWH-QPTEFAFASVISAC--GGDDNCGRQVHALALKTSFDSCVYVGNALIM 206

Query: 262 MYA-NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSA 320
           MY  +CG  D A  +++ +  +NLV   +M++G+   G                  C   
Sbjct: 207 MYCKSCGGADEAWNVYEAMGFRNLVSWNSMIAGFQVCG------------------C--- 245

Query: 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG-VLDQAQRIHLYIDKN 379
                        AL+LF++M V G++ D+ T++S+ S    +G  L+   ++     K 
Sbjct: 246 ----------GNRALELFSQMHVGGIRFDRATLVSIFSCLCGMGDGLECCFQLQCLTIKT 295

Query: 380 AFGGDLRVNNAIIDMYAKCGS--LESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
            F   + V  A++  Y+  G    +  R   E   R++V+SWT +I AFA   D + AL+
Sbjct: 296 GFILKIEVATALVKAYSSLGGEVSDCYRIFLELDGRQDVVSWTGIIAAFA-ERDPKKALV 354

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI-FASMTNEYNIPPKYEHYGCMVDL 496
            F +   E + P+   F  VL AC  AGL  E   +   S   +            ++  
Sbjct: 355 IFRQFLRECLAPDRHMFSIVLKAC--AGLATERHALTVQSHVLKVGFEDDIVLANALIHA 412

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555
             R   +  + ++ + M  + + V W S++ A  +HG+    + A     Q+D   DGA
Sbjct: 413 CARCGSVALSKQVFDKMG-SRDTVSWNSMLKAYAMHGQ---GKEALLLFSQMDAQPDGA 467


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 251/749 (33%), Positives = 377/749 (50%), Gaps = 82/749 (10%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHM----KQTHAQILKLSHSHHSQNSLLLKLLLTSFSL 59
           L +   P +    +   +CS+L +     KQ HA +L+        N+ L+ +       
Sbjct: 178 LLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTNNALVTMY------ 231

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119
                  +Y A ++F           N  I ++S + R + AL     ML  G+  +  +
Sbjct: 232 --AKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVT 289

Query: 120 FPPILKAIARAEGLLEGMQVHGLG-TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
              +L A +  E L  G ++H           + FV   LV MY  C +    RL+FD M
Sbjct: 290 LASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGM 349

Query: 179 SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACSRAGNLSYG 237
             R I  W+ MI GY +N    E + LF EM     + P+ + LS +L AC R  +    
Sbjct: 350 FRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDK 409

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
           E +H  ++      D ++Q+ L         MDM                      YSR 
Sbjct: 410 EGIHSCVVKWGFEKDKYVQNAL---------MDM----------------------YSRM 438

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG------------ 345
           G++E AR IF  M  KD++ W+ MI+GY       +AL L ++MQ               
Sbjct: 439 GRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYE 498

Query: 346 ------MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399
                 +KP+ VT+++V+  CA L  L + + IH Y  K     D+ V +A++DMYAKCG
Sbjct: 499 DNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCG 558

Query: 400 SLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES-----IDPNGVTF 454
            L  +R VFE+M  RNVI+W  +I A+ +HG    AL  F +M +E      I PN VT+
Sbjct: 559 CLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTY 618

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           I +  + SH+G+VDEG  +F +M  ++ I P  +HY C+VDL GR+  + EA  L++TMP
Sbjct: 619 IAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMP 678

Query: 515 F-APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573
                V  W SL+ AC++H  +E+ E AAK L  LDP          N+     +   +G
Sbjct: 679 SNMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDP----------NVLDYGTKQSMLG 728

Query: 574 ELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVP 633
              + MKE+G+ KE  CS IE  +EV++FL  D SH Q+ +++E L  +   +K  GYVP
Sbjct: 729 ---RKMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVP 785

Query: 634 DIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVS 693
           D    L ++ +EEK  ++  HSE+LA+ +GL+++   + IR+ KNLRVC DCH   K +S
Sbjct: 786 DTSCVLHNVGEEEKETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFIS 845

Query: 694 KVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           K+  REI++RD  RFHH+++G CSC DYW
Sbjct: 846 KIVDREIILRDVRRFHHFRNGTCSCGDYW 874



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 151/570 (26%), Positives = 238/570 (41%), Gaps = 83/570 (14%)

Query: 1   MSTLSQPTKPLTLPTS-TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL 59
           M T   P      P    A +    L   KQ HA + K   +                 L
Sbjct: 76  MVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQA-----------------L 118

Query: 60  PTTTPSSLY----------YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKML 109
           PT  P+SL            A  +F +I        N  I A       + A+ +F  ML
Sbjct: 119 PTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLML 178

Query: 110 NEGLTIDRFSFPPILKAIAR-AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI 168
            E +    F+   +  A +    GLL G QVH    + G     F    LV MY   G++
Sbjct: 179 LENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRV 237

Query: 169 LDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228
            +A+ +FD    +D+V W+ +I    QN  F+E L     M  S V P+ + L+ +L AC
Sbjct: 238 YEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPAC 297

Query: 229 SRAGNLSYGEAVHEFIIDNNVALD-AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS 287
           S    L  G+ +H F++ NN  ++ + +   L+ MY NC   +  + +FD +  + + V 
Sbjct: 298 SHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVW 357

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGM 346
            AM++GY R                               N    EA++LF EM    G+
Sbjct: 358 NAMIAGYVR-------------------------------NEFDYEAIELFVEMVFELGL 386

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE 406
            P+ VT+ SV+ AC         + IH  + K  F  D  V NA++DMY++ G +E AR 
Sbjct: 387 SPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARS 446

Query: 407 VFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM------------------KDESID 448
           +F  M R++++SW +MI  + + G   +AL   + M                  K+  + 
Sbjct: 447 IFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLK 506

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
           PN VT + VL  C+    + +G+EI A    +  +         +VD++ +   L  +  
Sbjct: 507 PNSVTLMTVLPGCAALAALGKGKEIHAYAVKQM-LSKDVAVGSALVDMYAKCGCLNLSRT 565

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELA 538
           + E M    NV+ W  L+ A  +HG+ E A
Sbjct: 566 VFEQMSVR-NVITWNVLIMAYGMHGKGEEA 594



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 169/632 (26%), Positives = 264/632 (41%), Gaps = 146/632 (23%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTT 63
           +S  T+PL LP  ++I +                  + HHS               P T+
Sbjct: 1   MSSFTQPLLLPYPSSIHT-----------------PNKHHS---------------PPTS 28

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFI---RAISWSHRPKH-ALKVFLKMLNEGLTIDRFS 119
            S++    +  + + A P R+ ++++   R+ + S    H A+  +  M+  G+  D F+
Sbjct: 29  SSAITTTTTTTTTVAAEP-RLPSEWVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFA 87

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           FP +LKA A  + L  G Q+H    K G      V   LV MYG CG I  AR +FD+++
Sbjct: 88  FPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEIT 147

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN-LSYGE 238
            RD V W+ MI+   +   ++  ++LF  M + NV P    L  +  ACS   N L  G+
Sbjct: 148 NRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGK 207

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
            VH F++ N         + L+TMYA  G +  AK LFD                     
Sbjct: 208 QVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFD--------------------- 245

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
                  +FD   +KDL+ W+ +IS  ++N+  +EAL   + M   G++P+ VT+ SV+ 
Sbjct: 246 -------VFD---DKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLP 295

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN----AIIDMYAKCGSLESAREVFERMRRR 414
           AC+HL +L   + IH ++  N    DL  N+    A++DMY  C   E  R VF+ M RR
Sbjct: 296 ACSHLEMLGCGKEIHAFVLMN---NDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRR 352

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDE-SIDPNGVTFIGVLYAC------------ 461
            +  W +MI  +  +     A+  F +M  E  + PN VT   VL AC            
Sbjct: 353 TIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGI 412

Query: 462 -----------------------SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
                                  S  G ++  R IF SM  +  +      +  M+  + 
Sbjct: 413 HSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVS-----WNTMITGYV 467

Query: 499 RANLLREALELVETM---------------------PFAPNVVIWGSLMAACRVHGEI-- 535
                 +AL L+  M                     P  PN V   +++  C     +  
Sbjct: 468 VCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGK 527

Query: 536 --ELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565
             E+  +A KQ+L  D     ALV   ++YAK
Sbjct: 528 GKEIHAYAVKQMLSKDVAVGSALV---DMYAK 556


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 249/724 (34%), Positives = 386/724 (53%), Gaps = 43/724 (5%)

Query: 3   TLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQ-NSLLLKLLLTSFSLPT 61
            + +P   L     +A+ S SSL   +  HA IL+   +H +   S L   L+  +S   
Sbjct: 2   NVPRPPNLLGSFLESAVLSRSSLLG-RAVHAHILR---THDTPLPSFLCNHLVNMYS-KL 56

Query: 62  TTPSSLYYALSIFSQIPAPPSRVS-NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
             P+S    LS+ +    P + V+    I     + R   AL  F  M  E +  + F+F
Sbjct: 57  DLPNSAQLVLSLTN----PRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFTF 112

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY 180
           P + KA A     + G Q+H L  K G   D FV      MY   G   +AR MFD+M +
Sbjct: 113 PCVFKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPH 172

Query: 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV 240
           R++  W+  +    Q+G   + +  F++    + EP+ +     L+AC+   +L  G  +
Sbjct: 173 RNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQL 232

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H FI+ +    D  + + LI  Y  CG                 +VS+ +V  +SR G  
Sbjct: 233 HGFIVRSRYREDVSVFNGLIDFYGKCG----------------DIVSSELV--FSRIGS- 273

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
                       ++++ W ++++   +N+  + A  +F + +   ++P    + SV+SAC
Sbjct: 274 ----------GRRNVVSWCSLLAALVQNHEEERACMVFLQARK-EVEPTDFMISSVLSAC 322

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           A LG L+  + +H    K     ++ V +A++D+Y KCGS+E A +VF  M  RN+++W 
Sbjct: 323 AELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERNLVTWN 382

Query: 421 SMINAFAIHGDARNALIFFNKMKDES--IDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           +MI  +A  GD   AL  F +M   S  I  + VT + VL ACS AG V+ G +IF SM 
Sbjct: 383 AMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQIFESMR 442

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538
             Y I P  EHY C+VDL GR+ L+  A E ++ MP  P + +WG+L+ AC++HG+ +L 
Sbjct: 443 GRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMHGKTKLG 502

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
           + AA++L +LDPD  G  V+ SN+ A   RW++   +RK M++ GI K    S + + N 
Sbjct: 503 KIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGIKKNVGYSWVAVKNR 562

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           V+ F   D  H++  +I   L ++  E+K AGYVPD + +L DLE+EEK   + +HSEK+
Sbjct: 563 VHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLEEEEKASEVWYHSEKI 622

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           AL +GLI+  +   IRI KNLR+C DCH+ IK +SK+  REI++RD  RFH +KDG CSC
Sbjct: 623 ALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVGREIIVRDNNRFHRFKDGWCSC 682

Query: 719 KDYW 722
           KDYW
Sbjct: 683 KDYW 686


>gi|302791754|ref|XP_002977643.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
 gi|300154346|gb|EFJ20981.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
          Length = 879

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/641 (35%), Positives = 359/641 (56%), Gaps = 33/641 (5%)

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
           ++   I   +   R   AL++F  ML EG+ +DR +   +L A +   GL EG  +HG  
Sbjct: 270 LATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRIIHGFM 329

Query: 144 TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
            ++ F         L+ MYG CG + +A  +F  M +RD++ W+ +I  + Q+    E L
Sbjct: 330 REIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEAL 389

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
           +L   M++  V+ D++     L  C+ +  L+ G  +H +I+++ +  D  L + ++ MY
Sbjct: 390 HLLHLMQLDGVKADKISFVNALPLCATSEALAKGRMIHSWIVESGIKADVMLDNAILDMY 449

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
            +C   D                               DA  +F  M  +D + W+AMI+
Sbjct: 450 GSCKSTD-------------------------------DASRVFRAMKVRDQVSWNAMIT 478

Query: 324 GYAENNH-PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
            YA       EAL LF +MQ+ G  PD ++ ++ +SACA    L + + +H  I +    
Sbjct: 479 AYAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDRIRETGLE 538

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
            ++ V NA+++MYAK G+L  AR++F +M   +VISW  MI+AFA HG A   L FF +M
Sbjct: 539 SNMTVANAVLNMYAKSGTLVLARKMFGKMPLPDVISWNGMISAFAQHGHADQVLRFFRRM 598

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY-NIPPKYEHYGCMVDLFGRAN 501
             E   PN VTF+ V+ ACSH GLV +G ++F S+ +++  I P+ EHY CMVDL  RA 
Sbjct: 599 NHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIARAG 658

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSN 561
            L  A + +   P  P+ VI  +++ A +VH ++E A  +A+ L++L PD   A V+LSN
Sbjct: 659 KLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRSAAYVVLSN 718

Query: 562 IYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNE 621
           +Y +  +  +  ++R+ M E+ I KE A S I +   V+EF T D ++ +T +I E+L  
Sbjct: 719 LYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTNARTPEILEELER 778

Query: 622 VISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRV 681
           +  E+  AGY PD    L D+ DE+K+ ++ +HSEKLA+ +GLIS+   + +RI+KNLRV
Sbjct: 779 LSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFGLISTAPGTSLRIIKNLRV 838

Query: 682 CEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           C DCH   K +SK+  REIV+RD  RFHH+ +G CSC DYW
Sbjct: 839 CGDCHTATKFISKITGREIVVRDSHRFHHFDNGTCSCGDYW 879



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 137/519 (26%), Positives = 239/519 (46%), Gaps = 56/519 (10%)

Query: 19  ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP 78
           ++   SL   K+ HA+I K   S   +   +  LL+  +        SL  A + F ++P
Sbjct: 8   VADSRSLDLGKEVHARICK---SAMDRGPFMGDLLVRMY----VDCGSLIDAKACFDRMP 60

Query: 79  APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI-ARAEGLLEGM 137
              +    + IRA       + AL +F  M  EG+     +F  +L A  A  E L EG 
Sbjct: 61  VQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGR 120

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           ++HG+       SD +V T L+ MYG C  + DAR +FD + ++ +V W+ MI  Y Q  
Sbjct: 121 RIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQD 180

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAV--------HEFIIDNNV 249
             ++ + +F  M +  V+ + +    +L ACS+  +L   + V        H+ + D++ 
Sbjct: 181 HHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSF 240

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
           A      + L+  Y +CG ++ A   F +  L                            
Sbjct: 241 A------TALVNFYGSCGDLEQAFRAFSRHRL---------------------------- 266

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
               +LI  +AMI+ Y +     EAL+LF  M + G+K D++  ++V++AC+    L++ 
Sbjct: 267 ----ELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEG 322

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           + IH ++ +  F   +   NA+I+MY KCGSLE A EVF  M+ R+VISW ++I A   H
Sbjct: 323 RIIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQH 382

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
                AL   + M+ + +  + ++F+  L  C+ +  + +GR I + +  E  I      
Sbjct: 383 SQHPEALHLLHLMQLDGVKADKISFVNALPLCATSEALAKGRMIHSWIV-ESGIKADVML 441

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
              ++D++G      +A  +   M     V  W +++ A
Sbjct: 442 DNAILDMYGSCKSTDDASRVFRAMKVRDQVS-WNAMITA 479



 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 195/418 (46%), Gaps = 40/418 (9%)

Query: 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
           +  +L  +A +  L  G +VH    K      PF+   LV MY  CG ++DA+  FD+M 
Sbjct: 1   YADLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMP 60

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN-LSYGE 238
            +D + W+ +I  + Q G  ++ L+LF  M++  V P       +L ACS     L  G 
Sbjct: 61  VQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGR 120

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
            +H  +    +  D ++ +TL+ MY  C  ++ A+ +FD +  K +V   AM+       
Sbjct: 121 RIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMI------- 173

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
                                   + YA+ +H ++A+++F  M + G+K +++T + V+ 
Sbjct: 174 ------------------------TAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLD 209

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           AC+ L  L+ A+ + L +++       D     A+++ Y  CG LE A   F R R   +
Sbjct: 210 ACSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAFSRHRLELI 269

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           ++ T+MI  +        AL  F  M  E +  + +  + VL ACS    ++EGR I   
Sbjct: 270 LA-TAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRIIHGF 328

Query: 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
           M  E            +++++G+   L EA+E+  +M    +V+ W +++AA   HG+
Sbjct: 329 M-REIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQH-RDVISWNTIIAA---HGQ 381



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 169/375 (45%), Gaps = 37/375 (9%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           SL  A+ +F  +        N  I A     +   AL +   M  +G+  D+ SF   L 
Sbjct: 353 SLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALP 412

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
             A +E L +G  +H    + G  +D  +   ++ MYG+C    DA  +F  M  RD V 
Sbjct: 413 LCATSEALAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKVRDQVS 472

Query: 186 WSVMIDGY-FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
           W+ MI  Y  Q  L  E L LF++M++    PD +     LSAC+   +L+ G+ +H+ I
Sbjct: 473 WNAMITAYAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDRI 532

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
            +  +  +  + + ++ MYA  G + +A+ +F K+ L +++    M+             
Sbjct: 533 RETGLESNMTVANAVLNMYAKSGTLVLARKMFGKMPLPDVISWNGMI------------- 579

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                             S +A++ H  + L+ F  M   G  P+ VT +SV+SAC+H G
Sbjct: 580 ------------------SAFAQHGHADQVLRFFRRMNHEGKLPNDVTFVSVVSACSHGG 621

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFER--MRRRNVISWT 420
           ++    ++ + +  +      R  +   ++D+ A+ G L++A +      ++   VI  +
Sbjct: 622 LVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIARAGKLDAAEKFIAAAPLKPDRVIH-S 680

Query: 421 SMINAFAIHGDARNA 435
           +M+ A  +H D   A
Sbjct: 681 TMLGASKVHKDVERA 695


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/433 (45%), Positives = 285/433 (65%)

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
           M++G++R GQV   + +FD+M E+D+I W+ M+  Y  N    EAL+ F  M+  G+ PD
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           + T+++++SA A L +L+  Q IH  ID  +    + +  A++DMYAKCG +E +R +FE
Sbjct: 61  EATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFE 120

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            M RR+V +W  MI   A HG  ++AL  F +  +E + P  VTF+GVL ACS AGLV E
Sbjct: 121 NMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKE 180

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           GR  F  MT+ Y I P+ EHYGCMVDL GRA L+ EA++++E+M  +P+ V+W  ++ AC
Sbjct: 181 GRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCAC 240

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
           R+HG  EL E    +L++LDP +DG  V L++IYA  ++W+DV  +R+ M ER   K   
Sbjct: 241 RIHGLAELGEKIGNRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAG 300

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
            S IE   +V+ F+   R H+Q+ +I + L  + + L  AGYVP++   L D+ +EEK  
Sbjct: 301 WSLIEARGKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEEKEN 360

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
            I  HSE+LA+ +GL+ +   SCIRIVKNLRVC DCH   K++S+V+ REI++RD +RFH
Sbjct: 361 AIKVHSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRFH 420

Query: 710 HYKDGVCSCKDYW 722
           H+K+G CSC DYW
Sbjct: 421 HFKEGKCSCLDYW 433



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 134/287 (46%), Gaps = 35/287 (12%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           G++   + +FD+M  RD++ W+ M+  Y  NG   E L  F+ M+ S + PDE  L  +L
Sbjct: 9   GQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATLVTML 68

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
           SA ++   L +G+++H  I   ++ +   + + L+ MYA CGC++ ++ LF+ +  +++ 
Sbjct: 69  SASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDVS 128

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
               M+ G +  G  +DA  +F+                           +  NE    G
Sbjct: 129 TWNVMICGLASHGLGKDALTLFE---------------------------RFLNE----G 157

Query: 346 MKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
           + P  VT + V++AC+  G++ + +    +  D      ++     ++D+  + G +  A
Sbjct: 158 LHPMNVTFVGVLNACSRAGLVKEGRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEA 217

Query: 405 REVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
            +V E M    + + W  ++ A  IHG A       N++ +  +DP 
Sbjct: 218 IKVIESMAISPDPVLWAMVLCACRIHGLAELGEKIGNRLIE--LDPT 262



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 82/175 (46%)

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F ++P       N  + A   + +   AL+ F +M   GL  D  +   +L A A+   
Sbjct: 17  LFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATLVTMLSASAQLCL 76

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDG 192
           L  G  +H +   L       + T L+ MY  CG I  +RL+F+ M  RD+  W+VMI G
Sbjct: 77  LEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDVSTWNVMICG 136

Query: 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
              +GL  + L LFE      + P  +    +L+ACSRAG +  G    + + D+
Sbjct: 137 LASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHYFQMMTDS 191



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 113/287 (39%), Gaps = 60/287 (20%)

Query: 23  SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP------------SSLYYA 70
           ++L  M    AQ+  L H     +      ++ S SLP T                +  +
Sbjct: 62  ATLVTMLSASAQLCLLEHGQSIHS------IIDSLSLPMTISIGTALLDMYAKCGCIEQS 115

Query: 71  LSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARA 130
             +F  +P       N  I  ++     K AL +F + LNEGL     +F  +L A +RA
Sbjct: 116 RLLFENMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRA 175

Query: 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI 190
             + EG     + T   +G +P ++      YG                         M+
Sbjct: 176 GLVKEGRHYFQMMTD-SYGIEPEMEH-----YGC------------------------MV 205

Query: 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVA 250
           D   + GL  E + + E M +S   PD ++ + +L AC   G    GE +   +I+ +  
Sbjct: 206 DLLGRAGLVFEAIKVIESMAIS---PDPVLWAMVLCACRIHGLAELGEKIGNRLIELDPT 262

Query: 251 LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV--STAMVSGYS 295
            D H    L ++YAN      ++   D V ++ L+   +T+ V+G+S
Sbjct: 263 YDGHY-VQLASIYAN------SRKWEDVVRVRRLMAERNTSKVAGWS 302


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/587 (37%), Positives = 342/587 (58%), Gaps = 32/587 (5%)

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G  +H    K G   D F    L+ MY     + DA  +FD+M  R+ + +  +I GY +
Sbjct: 57  GKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAE 116

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           +  F E + LF  +    V P++   + +L AC+    L+ G  +H              
Sbjct: 117 SVRFLEAIELFVRLH-REVLPNQFTFASVLQACATMEGLNLGNQIH-------------- 161

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
                       C  +  GL   V      VS A++  Y++ G++E++  +F +   ++ 
Sbjct: 162 ------------CHVIKIGLHSDVF-----VSNALMDVYAKCGRMENSMELFAESPHRND 204

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + W+ +I G+ +    ++AL+LF  M    ++  +VT  S + ACA L  L+   +IH  
Sbjct: 205 VTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSL 264

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
             K  F  D+ V NA+IDMYAKCGS++ AR VF+ M +++ +SW +MI+ +++HG  R A
Sbjct: 265 TVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREA 324

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
           L  F+KM++  + P+ +TF+GVL AC++AGL+D+G+  F SM  ++ I P  EHY CMV 
Sbjct: 325 LRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVW 384

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555
           L GR   L +A++L++ +PF P+V++W +L+ AC +H +IEL   +A+++L+++P     
Sbjct: 385 LLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKAT 444

Query: 556 LVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQI 615
            VLLSN+YA  KRW +V  +RK+MK +G+ KE   S IE    V+ F   D SH +   I
Sbjct: 445 HVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVI 504

Query: 616 YEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRI 675
              L  +  + K AGY+P+ +  L+D+EDEEK  ++  HSE+LAL +G+I +   S IRI
Sbjct: 505 NGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRI 564

Query: 676 VKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +KNLR+C DCH  IK +SKV  REIV+RD  RFHH+++G+CSC DYW
Sbjct: 565 MKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 176/364 (48%), Gaps = 34/364 (9%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P   +      I+  + S R   A+++F+++  E L  ++F+F  +L+A A 
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREVLP-NQFTFASVLQACAT 150

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            EGL  G Q+H    K+G  SD FV   L+ +Y  CG++ ++  +F +  +R+ V W+ +
Sbjct: 151 MEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTV 210

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G+ Q G  ++ L LF  M    V+  E+  S  L AC+    L  G  +H   +    
Sbjct: 211 IVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTF 270

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             D  + + LI MYA CG +  A+ +FD +  ++ V   AM+SGYS  G   +A  IFD+
Sbjct: 271 DKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDK 330

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M E ++                               KPDK+T + V+SACA+ G+LDQ 
Sbjct: 331 MQETEV-------------------------------KPDKLTFVGVLSACANAGLLDQG 359

Query: 370 QRIHL-YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFA 427
           Q      I  +     +     ++ +  + G L+ A ++ + +  + +V+ W +++ A  
Sbjct: 360 QAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACV 419

Query: 428 IHGD 431
           IH D
Sbjct: 420 IHND 423



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 8/172 (4%)

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           + + +H  I K     DL   N +++MY K   L  A ++F+ M  RN IS+ ++I  +A
Sbjct: 56  RGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYA 115

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
                  A+  F ++  E + PN  TF  VL AC+    ++ G +I   +  +  +    
Sbjct: 116 ESVRFLEAIELFVRLHREVL-PNQFTFASVLQACATMEGLNLGNQIHCHVI-KIGLHSDV 173

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
                ++D++ +   +  ++EL    P   N V W +++      G ++L +
Sbjct: 174 FVSNALMDVYAKCGRMENSMELFAESPHR-NDVTWNTVIV-----GHVQLGD 219


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/727 (31%), Positives = 381/727 (52%), Gaps = 74/727 (10%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F + P     + N  + A   S + + AL++F +M +        +   +L+A  +
Sbjct: 185 ANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGK 244

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM----------- 178
              L EG Q+HG   + G  S+  +   +V MY    ++  AR+ FD             
Sbjct: 245 LRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSI 304

Query: 179 --SYR----------------------DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV 214
             SY                       DI+ W+ ++ G+   G ++ VL  F  ++ +  
Sbjct: 305 ISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGF 364

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA-- 272
           +PD   ++  L A    G  + G+ +H +I+ + +  D ++ ++L+  Y    C+D A  
Sbjct: 365 KPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEV 424

Query: 273 ----------------------KGLFDKV-----------LLKNLVVSTAMVSGYSRAGQ 299
                                 KGLFD             +  +LV   ++VSGYS +G+
Sbjct: 425 VFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGR 484

Query: 300 VEDARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355
            E+A  + +++    +  +++ W+AMISG  +N +  +AL+ F++MQ   +KP+  T+ +
Sbjct: 485 SEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICT 544

Query: 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN 415
           ++ ACA   +L   + IH +  ++ F  D+ +  A+IDMY K G L+ A EVF  ++ + 
Sbjct: 545 LLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNIKEKT 604

Query: 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           +  W  M+  +AI+G        F++M+   + P+ +TF  +L  C ++GLV +G + F 
Sbjct: 605 LPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSGLVMDGWKYFD 664

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           SM  +YNI P  EHY CMVDL G+A  L EAL+ +  +P   +  IWG+++AACR+H +I
Sbjct: 665 SMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIWGAVLAACRLHKDI 724

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           ++AE AA+ LL+L+P +     L+ NIY+   RW DV  L++SM   G+      S I++
Sbjct: 725 KIAEIAARNLLRLEPYNSANYALMMNIYSTFDRWGDVERLKESMTALGVKIPNVWSWIQV 784

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
              ++ F T  +SH +  +IY +L ++ISE+K  GYV DI+    +++D EK +V+L H+
Sbjct: 785 KQTIHVFSTEGKSHPEEGEIYFELYQLISEIKKLGYVLDINCVHQNIDDSEKEKVLLSHT 844

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           EKLA+ YGL+ +K  S IR+VKN R+C DCH   K +S    REI +RD  RFHH+ +G 
Sbjct: 845 EKLAMTYGLMKTKGGSPIRVVKNTRICHDCHTTAKYISLARNREIFLRDGGRFHHFMNGE 904

Query: 716 CSCKDYW 722
           CSCKD W
Sbjct: 905 CSCKDRW 911



 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 130/593 (21%), Positives = 265/593 (44%), Gaps = 26/593 (4%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHH--SQNSLLLKLLLTSFSLPTTT 63
           Q + P   P         +L  +++ HAQI+K+    +  + +  +++  L      + T
Sbjct: 25  QFSPPKFSPFFHPFGEIRTLNSVRELHAQIIKMPKKRNLVTMDGSMMRNYLQFGDFESAT 84

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAI-SWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
                    +F    A    + N FI    S+       L VF ++ ++G+  D  +   
Sbjct: 85  --------KVFFVGFARNYLLWNSFIEEFASFGGDSHEILAVFKELHDKGVKFDSKALTV 136

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +LK       L  GM+VH    K GF  D  +   L+ +Y     I  A  +FD+   ++
Sbjct: 137 VLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPLQE 196

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
              W+ ++    ++  +++ L LF  M+ ++ +  +  + K+L AC +   L+ G+ +H 
Sbjct: 197 DFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHG 256

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302
           ++I      +  + +++++MY+    +++A+  FD     N     +++S Y+    +  
Sbjct: 257 YVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNG 316

Query: 303 ARLIFDQM----VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
           A  +  +M    V+ D+I W++++SG+      +  L  F  +Q  G KPD  ++ S + 
Sbjct: 317 AWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGFKPDSCSITSALQ 376

Query: 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
           A   LG  +  + IH YI ++    D+ V  +++D Y K   L+ A  VF   + +N+ +
Sbjct: 377 AVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICA 436

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478
           W S+I+ +   G   NA    N+MK+E I P+ VT+  ++   S +G  +E   +   + 
Sbjct: 437 WNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINRIK 496

Query: 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP---FAPNVVIWGSLMAACRVHGEI 535
           +   + P    +  M+    +     +AL+    M      PN     +L+ AC     +
Sbjct: 497 S-LGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLL 555

Query: 536 ELAE----FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584
           ++ E    F+ +     D     AL+   ++Y K  + +   E+ +++KE+ +
Sbjct: 556 KIGEEIHCFSMRHGFLDDIYIATALI---DMYGKGGKLKVAHEVFRNIKEKTL 605


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/629 (33%), Positives = 354/629 (56%), Gaps = 34/629 (5%)

Query: 96  HRPKHALKVF--LKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPF 153
           +R + A+++F  L++ ++G  +   ++  ++ A      +    +V       GF  D +
Sbjct: 95  NRHREAMELFEILELEHDGYGVGASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLY 154

Query: 154 VQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN 213
           V   ++ M+  CG +LDAR +FD+M  +D+  W  M+ G    G F E   LF  M    
Sbjct: 155 VMNRVLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEF 214

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
            +      + ++ A +  G +  G+ +H   +   V  D H                   
Sbjct: 215 NDGRSRTFATMIRASAGLGLVQVGKQIHSCALKRGVG-DDHF------------------ 255

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
                       VS A++  YS+ G +EDA  +FDQM EK  + W+++I+ YA + + +E
Sbjct: 256 ------------VSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEE 303

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
           AL L+ EM+  G   D  T+  VI  CA L  L+ A++ H  + ++ F  D+  N A++D
Sbjct: 304 ALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVANTALVD 363

Query: 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453
            Y+K G +E AR VF RMR +NVISW ++I  +  HG  + A+  F +M  E + P  VT
Sbjct: 364 FYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVT 423

Query: 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513
           F+ VL ACS++GL   G EIF SM  ++ + P+  HY CM++L GR +LL EA  L+ T 
Sbjct: 424 FLAVLSACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELLGRESLLDEAYALIRTA 483

Query: 514 PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573
           PF P   +W +L+ ACR+H  +EL + AA++L  ++P+     ++L N+Y    + ++  
Sbjct: 484 PFKPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCNYIVLLNLYNSSGKLKEAA 543

Query: 574 ELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVP 633
            + +++K++G+    ACS +E+  + Y FL  D+SH QT +IY+K++ ++ E+   GY  
Sbjct: 544 GILQTLKKKGLRMLPACSWVEVKKQPYAFLCGDKSHSQTKEIYQKVDNLMVEICKHGYAE 603

Query: 634 DIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVS 693
           +  + L D+++EE+R ++ +HSEKLA+ +GLI++   + ++I +  RVC DCH+ IKL++
Sbjct: 604 ENETLLPDVDEEEQR-ILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKLIA 662

Query: 694 KVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            V  REIV+RD +RFHH+++G CSC DYW
Sbjct: 663 MVTGREIVVRDASRFHHFRNGSCSCGDYW 691



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 132/283 (46%), Gaps = 5/283 (1%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F Q+P   +   N  I + +     + AL ++ +M + G T+D F+   +++  AR
Sbjct: 273 AHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICAR 332

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L    Q H    + GF +D    T LV  Y   G++ DAR +F++M +++++ W+ +
Sbjct: 333 LASLEHAKQAHAALVRHGFATDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNAL 392

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEFIIDNN 248
           I GY  +G   E + +FE+M    V P  +    +LSACS +G    G E  +    D+ 
Sbjct: 393 IAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSGLSQRGWEIFYSMKRDHK 452

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV-VSTAMVSGYSRAGQVEDARLIF 307
           V   A   + +I +      +D A  L      K    +  A+++       +E  +L  
Sbjct: 453 VKPRAMHYACMIELLGRESLLDEAYALIRTAPFKPTANMWAALLTACRMHKNLELGKLAA 512

Query: 308 DQM--VEKDLIC-WSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           +++  +E + +C +  +++ Y  +   +EA  +   ++  G++
Sbjct: 513 EKLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGILQTLKKKGLR 555


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/669 (33%), Positives = 363/669 (54%), Gaps = 71/669 (10%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           ++++ AR   L EG ++H L  ++G GSD +V   LV MYG CG + +ARL+F+    ++
Sbjct: 40  VIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN-LSYGEAVH 241
           +  W+++I    Q+G   E L LF EM    ++P  +  +  ++ACS     L  G A+H
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALH 159

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV---------- 291
             +            ++L++MY+ CG ++ +   F+ +   N V   AM+          
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGL 219

Query: 292 -------------------------SGYSRAGQVEDARLI--------FDQ--------- 309
                                    S Y +  Q++ AR I        FDQ         
Sbjct: 220 EALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVVNVILNM 279

Query: 310 ----------------MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
                           M + D+I W+ MI+ Y+++ H  EAL+ +  MQ  G+ PD  T 
Sbjct: 280 YGKCGCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTY 339

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
           +SVI ACA LG ++  +++H  +   AF     + N++++MY KCG L+ AR +F++  +
Sbjct: 340 VSVIDACATLGDMEVGKQVHRRLGDRAF-QVTELANSLVNMYGKCGILDVARSIFDKTAK 398

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
            +V +W +MI A+A H   + A   F  M+ +  +P+ +TF+ VL AC++AGL +E    
Sbjct: 399 GSV-TWNAMIGAYAQHSHEQQAFELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSY 457

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           F  M  ++ + P   HYGCMV+  G+A  L +A  L++ MPF P+V+ W S +A CR HG
Sbjct: 458 FVCMQQDHGVRPGGGHYGCMVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSHG 517

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
           +++  +FAAK  +++DP+     V L+ I+A    +Q+   +RK M +RGI K    S I
Sbjct: 518 DMKRGKFAAKGAIRIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSII 577

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW 653
           ++   VYEF   D+S+ ++ +I+++L  +  E+K AGY PD+     D+E  +K  ++  
Sbjct: 578 KLGTSVYEFTAGDQSNPRSKEIFDELKRLDKEMKRAGYDPDMTHVAHDVEAGQKEPLLFA 637

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HSE+LA+ +G+IS+ + + +RI+KNLRVC DCH   KL SK+  REI++RD  RFHH+K+
Sbjct: 638 HSERLAIAFGIISTSQGTPLRIMKNLRVCGDCHAMTKLTSKITRREIIVRDSNRFHHFKN 697

Query: 714 GVCSCKDYW 722
           G CSCKD+W
Sbjct: 698 GSCSCKDFW 706



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/476 (25%), Positives = 209/476 (43%), Gaps = 49/476 (10%)

Query: 4   LSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTT 63
           L Q  +P ++  + AI++CS+          +  L   +  Q++++    L S     + 
Sbjct: 127 LKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSM---YSK 183

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
             SL  ++  F  +    +   N  I A +   R   AL+   KM  EG+     ++  +
Sbjct: 184 CGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTYITL 243

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           + A  +   L     +H    + GF  D  V   ++ MYG CG + DA  MF  MS  D+
Sbjct: 244 MSAYDQPSQLKSARYIHDCILRTGFDQD--VVNVILNMYGKCGCLQDAEAMFKSMSQPDV 301

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           + W+ MI  Y Q+G   E L  +E M+   V PD+     ++ AC+  G++  G+ VH  
Sbjct: 302 IAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRR 361

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           + D    +   L ++L+ MY  CG +D+A+ +FDK                         
Sbjct: 362 LGDRAFQV-TELANSLVNMYGKCGILDVARSIFDK------------------------- 395

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
                    K  + W+AMI  YA+++H Q+A +LF  M++ G +P  +T +SV+SACA+ 
Sbjct: 396 -------TAKGSVTWNAMIGAYAQHSHEQQAFELFLLMRLDGEEPSYITFMSVLSACANA 448

Query: 364 GVLDQAQRIHLYIDKN----AFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVIS 418
           G+ ++A    + + ++      GG       +++   K G L  A  + + M    +V++
Sbjct: 449 GLPEEAHSYFVCMQQDHGVRPGGGHY---GCMVESLGKAGRLSDAEALIQGMPFEPDVLT 505

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT-FIGVLYACSHAGLVDEGREI 473
           WTS +     HGD +     F       IDP   T ++ +    + AG   E   I
Sbjct: 506 WTSFLANCRSHGDMKRGK--FAAKGAIRIDPEASTGYVALARIHADAGDFQEASRI 559



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 147/312 (47%), Gaps = 36/312 (11%)

Query: 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282
           +++ +C+R G L+ G  +H+ I    +  D ++ + L+ MY  CG +             
Sbjct: 39  RVIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSL------------- 85

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
                             E+ARL+F+    K++  W+ +I+  A++   QEAL LF EM 
Sbjct: 86  ------------------EEARLVFEATPAKNVFSWTILITVCAQHGRSQEALALFYEML 127

Query: 343 VCGMKPDKVTMLSVISAC-AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
             G++P  V+  + I+AC A    L   + +H  + +  F   +    +++ MY+KCGSL
Sbjct: 128 KQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSKCGSL 187

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
           E + + FE M   N +SW +MI AFA H     AL    KM  E I    VT+I ++ A 
Sbjct: 188 EESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTYITLMSAY 247

Query: 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI 521
                +   R I   +          +    +++++G+   L++A  + ++M   P+V+ 
Sbjct: 248 DQPSQLKSARYIHDCI---LRTGFDQDVVNVILNMYGKCGCLQDAEAMFKSMS-QPDVIA 303

Query: 522 WGSLMAACRVHG 533
           W +++AA   HG
Sbjct: 304 WNTMIAAYSQHG 315


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/628 (36%), Positives = 344/628 (54%), Gaps = 43/628 (6%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           A+++FL ML +G   D ++   ++ A A       G Q+H L  +LG  SD  V  GLV 
Sbjct: 233 AVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVD 292

Query: 161 MYGACG---KILDARLMFDKMSYRDIVPWSVMIDGYFQ-NGLFDEVLNLFEEMKMSNVEP 216
           MY        +  AR +F +M   +++ W+ +I GY Q  G  +  + L  EM   ++EP
Sbjct: 293 MYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEP 352

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           + +  S +L AC+   +   G  +H  ++  ++                           
Sbjct: 353 NHLTYSSLLKACANLSDQDSGRQIHARVMKTSIG-------------------------- 386

Query: 277 DKVLLKNL-VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
                 N+ VV  A+VS Y+ +G +E+AR  FDQ+ E++L+  S+ I     +N    + 
Sbjct: 387 ------NVNVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIGETGRSNASWSS- 439

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
               +++   +     T  S++SA A +G+  + Q++H    K  F  D  ++N+++ MY
Sbjct: 440 ----QIESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMY 495

Query: 396 AKCGSLESAREVFERMRR-RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454
           ++CG L+ A   F+ M    NVISWTS+I+A A HG A  AL  F+ M    + PN VT+
Sbjct: 496 SRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTY 555

Query: 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
           I VL ACSH GLV EG+E F SM  ++ + P+ EHY CMVDL  R+ L++EALE +  MP
Sbjct: 556 IAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMP 615

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574
              + ++W +L+ ACR +  IE+ E AA+ ++ L+P      VLLSN+YA    W +V  
Sbjct: 616 CKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVAR 675

Query: 575 LRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
           +R  M+ R + KE   S + + N ++EF   D SH +  +IY KL  +I E+K  GYVPD
Sbjct: 676 IRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPD 735

Query: 635 IHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSK 694
               L D+ D+ K + +L HSEK+A+ +GLI++     IRI KNLRVC DCH+ IK +SK
Sbjct: 736 TSIVLHDMSDKLKEQCLLQHSEKIAVAFGLITTLPTKPIRIFKNLRVCADCHSAIKYISK 795

Query: 695 VYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              REI++RD  RFH  KDG CSC +YW
Sbjct: 796 STGREIILRDSNRFHRMKDGKCSCGEYW 823



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 185/393 (47%), Gaps = 54/393 (13%)

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM-SYRDIVPWSVMIDGYFQNGLFD 200
           LGT++   +D  V   L+ MY  CG +  AR +FD M   RD+V W+ M     +NG   
Sbjct: 70  LGTEV-LDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQ 128

Query: 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL--SYGEAVHEFIIDNNVALDAHLQST 258
           E L L  EM  S + P+   L     AC   G L  S G  V  F I             
Sbjct: 129 EALVLLGEMLESGLRPNAFTLCAAAHACF-PGELFRSSGGTVLGFAIKT----------- 176

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
                          G +      ++ V  A++  ++R G +  AR +F+ +VE+ ++ W
Sbjct: 177 ---------------GFWGT----DVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVW 217

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           + MI+ Y +     +A++LF  M   G +PD  TM S++SACA  G     Q++H  + +
Sbjct: 218 TLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLR 277

Query: 379 NAFGGDLRVNNAIIDMYAKC---GSLESAREVFERMRRRNVISWTSMINAFA-IHGDARN 434
                D  V+  ++DMY K     S+E AR+VF+RM   NV+SWT++I+ +    G   N
Sbjct: 278 LGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENN 337

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM--TNEYNIP-------P 485
           A+    +M +ESI+PN +T+  +L AC++    D GR+I A +  T+  N+         
Sbjct: 338 AVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVS 397

Query: 486 KYEHYGCM------VDLFGRANLLREALELVET 512
            Y   GCM       D     NLL  + ++ ET
Sbjct: 398 MYAESGCMEEARKAFDQLYERNLLSTSSDIGET 430



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 131/260 (50%), Gaps = 8/260 (3%)

Query: 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE-KDLICWSAMISGYAENNHPQE 333
           L  +VL  + +V+ ++++ YS+ G V  AR +FD M   +DL+ W+AM      N   QE
Sbjct: 70  LGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQE 129

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISAC--AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
           AL L  EM   G++P+  T+ +   AC    L        +   I    +G D+ V  A+
Sbjct: 130 ALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCAL 189

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           IDM+A+ G L +AR+VF  +  R V+ WT MI  +   G A  A+  F  M ++  +P+G
Sbjct: 190 IDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDG 249

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL---LREALE 508
            T   ++ AC+  G    G+++ + +     +       G +VD++ +  +   +  A +
Sbjct: 250 YTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCG-LVDMYTKLQMEQSMECARK 308

Query: 509 LVETMPFAPNVVIWGSLMAA 528
           + + MP   NV+ W +L++ 
Sbjct: 309 VFKRMP-THNVMSWTALISG 327


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/558 (38%), Positives = 322/558 (57%), Gaps = 34/558 (6%)

Query: 169 LDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP--DEMVLSKILS 226
           +DAR  FD++   + V  + M  GY +N L    L LF  M  S+     DE       S
Sbjct: 1   MDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFS 60

Query: 227 ACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV 286
           A +R  +     ++H  I       +A + +T++  YA  G  D+               
Sbjct: 61  ASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDL--------------- 105

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG- 345
                         E AR +FD M E+D++ W++MI+ YA+N    EA+ L+++M   G 
Sbjct: 106 --------------EVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGG 150

Query: 346 -MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
            +K + V + +V+ ACAH G +   + IH  + +     ++ V  +I+DMY+KCG +E A
Sbjct: 151 GIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMA 210

Query: 405 REVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464
              F +++ +N++SW++MI  + +HG  + AL  F +MK   + PN +TFI VL ACSHA
Sbjct: 211 SRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHA 270

Query: 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGS 524
           GL+DEGR  + +M  E+ I    EHYGCMVDL GRA  L EA  L++ M   P+  IWG+
Sbjct: 271 GLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGA 330

Query: 525 LMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584
           L++ACR+H  +ELAE + K+L +LD  + G  VLLSNIYA+   W+DV  +R  +K R I
Sbjct: 331 LLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEAGMWKDVERIRLLVKTRRI 390

Query: 585 LKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLED 644
            K    S  E+  ++Y F   D+SH Q  +IY  L +++  ++ AGYVP+  S L DL++
Sbjct: 391 EKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDE 450

Query: 645 EEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRD 704
           EEK   +  HSEKLA+ + L++S   S I I+KNLRVC DCH  +K ++K+  REI+IRD
Sbjct: 451 EEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRD 510

Query: 705 RTRFHHYKDGVCSCKDYW 722
             RFHH+KDG+CSC+DYW
Sbjct: 511 LQRFHHFKDGLCSCRDYW 528



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 12/222 (5%)

Query: 101 ALKVFLKMLN--EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           A+ ++ KMLN   G+  +  +   +L A A A  +  G  +H    ++G   + +V T +
Sbjct: 138 AIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSI 197

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           V MY  CG++  A   F K+  ++I+ WS MI GY  +G   E L +F EMK S + P+ 
Sbjct: 198 VDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNY 257

Query: 219 MVLSKILSACSRAGNLS-----YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           +    +L+ACS AG L      Y     EF I+  V         ++ +    GC+D A 
Sbjct: 258 ITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGV----EHYGCMVDLLGRAGCLDEAY 313

Query: 274 GLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
            L  ++ +K +  +  A++S       VE A +   ++ E D
Sbjct: 314 SLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELD 355


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/623 (35%), Positives = 345/623 (55%), Gaps = 32/623 (5%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           AL  + KM ++GL  D F++  IL A +  + LL+G  +H    +     +  V+  L+ 
Sbjct: 154 ALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALIT 213

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY  CG + D++ +F  M  +D+V W+ MI  Y   G   +  +LF  M      PD   
Sbjct: 214 MYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYT 273

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
            S IL AC+    L  G  +H  I       D  +Q+ LI+M+  C              
Sbjct: 274 FSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRC-------------- 319

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                            G +E AR  F  + +K+L  W+ M++ YA+ +  ++AL L+  
Sbjct: 320 -----------------GSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKN 362

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M + G  PD+ T  SV+ +CA LG L + + IH       F  D+ +  A+++MYAKCGS
Sbjct: 363 MLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGS 422

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           L  A++ F+ +  ++V+SW++MI A A HG A  AL   + M  + I  N VT   VL+A
Sbjct: 423 LADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHA 482

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           CSH G + EG + F  ++ ++ I    E+    +DL GRA  L+EA  ++ TMPF  + V
Sbjct: 483 CSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFV 542

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
              +L+  C+VHG++   +   K+++ L+P++ G+ VLL+N+YA   RW DV +LR+ M+
Sbjct: 543 ALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLRRYMR 602

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK-PAGYVPDIHSAL 639
           ++G+ ++  CS IE  +++YEF   D S+ +  +I  +L  + S +K   GYVPD     
Sbjct: 603 KKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYVPDTRDVF 662

Query: 640 VDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYARE 699
            D+ D++K E++ +HSEK+A+ +GLI+S   S +RI+KNLRVC DCH   KL SK+  R 
Sbjct: 663 HDVSDDKKEELLKFHSEKMAMGFGLITSPPGSTLRIIKNLRVCSDCHTVGKLASKITGRR 722

Query: 700 IVIRDRTRFHHYKDGVCSCKDYW 722
           I++RD TRFHH++ G+CSC DYW
Sbjct: 723 IIVRDGTRFHHFEGGICSCGDYW 745



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 216/441 (48%), Gaps = 34/441 (7%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           + AL+V+ +M+ + ++ID ++   +L A  +   + EG  V     +LGF  D  V T L
Sbjct: 50  QEALEVYKEMVRKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSL 109

Query: 159 VGMYGACGKILDARLMFDKM-SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           + ++  CG + +A  +F  M + RDI+  + MI  Y ++G  D  L+ + +M+   +EPD
Sbjct: 110 IHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPD 169

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
               + IL ACS    L  G+ +H+ I+++    +  +++ LITMYA CG +  +K LF 
Sbjct: 170 AFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFL 229

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
            + +K++V   AM++ Y+  G                               H ++A  L
Sbjct: 230 TMDVKDVVSWNAMIAAYTLYG-------------------------------HDKDAFSL 258

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
           F+ M   G  PD  T  S++ ACA    L+  + +H+ I    F  D  + N +I M+ +
Sbjct: 259 FHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTR 318

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CGSLESAR  F  + ++ + +W +M+ A+A     ++AL  +  M  E   P+  TF  V
Sbjct: 319 CGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSV 378

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           + +C+  G + EG+ I    T+             +V+++ +   L +A +  + +    
Sbjct: 379 VDSCASLGALREGKFIHECSTS-CGFEKDVILGTALVNMYAKCGSLADAKKSFDGIS-NK 436

Query: 518 NVVIWGSLMAACRVHGEIELA 538
           +VV W +++AA   HG  E A
Sbjct: 437 DVVSWSAMIAASAQHGHAEEA 457



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 190/379 (50%), Gaps = 34/379 (8%)

Query: 151 DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210
           D F+   ++ MYG C    DAR +FD++  R+   WS++++ Y QN ++ E L +++EM 
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 211 MSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270
              +  D   LS +L+AC++  ++  G  V     +     D  + ++LI ++A CGC++
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 271 MAKGLFDKV-LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
            A+ +F  +  +++++  TAM+  Y R G+              DL              
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGK-------------NDL-------------- 153

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389
               AL  + +M+  G++PD  T  +++ AC+    L   + IH +I ++   G++ V N
Sbjct: 154 ----ALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRN 209

Query: 390 AIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449
           A+I MYAKCGSL+ ++ +F  M  ++V+SW +MI A+ ++G  ++A   F++M      P
Sbjct: 210 ALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTP 269

Query: 450 NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
           +  TF  +L AC+    +++GR +   +T        +     ++ +F R   L  A   
Sbjct: 270 DIYTFSSILGACASPKRLEDGRMLHVRITAR-GFDRDFAMQNNLISMFTRCGSLESARRY 328

Query: 510 VETMPFAPNVVIWGSLMAA 528
             ++     +  W +++AA
Sbjct: 329 FYSIE-KKELGAWNTMLAA 346



 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 118/465 (25%), Positives = 201/465 (43%), Gaps = 46/465 (9%)

Query: 5   SQPTKPLTLPTSTAISSCSS---LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPT 61
           SQ  +P     +  + +CSS   L   K  H  IL+   S H  N  +   L+T ++   
Sbjct: 163 SQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILE---SKHFGNISVRNALITMYA--- 216

Query: 62  TTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFP 121
               SL  + S+F  +        N  I A +     K A  +F +M   G T D ++F 
Sbjct: 217 -KCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFS 275

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
            IL A A  + L +G  +H   T  GF  D  +Q  L+ M+  CG +  AR  F  +  +
Sbjct: 276 SILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKK 335

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241
           ++  W+ M+  Y Q     + L L++ M +    PD    S ++ +C+  G L  G+ +H
Sbjct: 336 ELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIH 395

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
           E         D  L + L+ MYA CG +  AK  FD +  K++V  +AM           
Sbjct: 396 ECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAM----------- 444

Query: 302 DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361
                               I+  A++ H +EAL+L + M + G+  ++VT  SV+ AC+
Sbjct: 445 --------------------IAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACS 484

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAI--IDMYAKCGSLESAREVFERMR-RRNVIS 418
           H G L +     + + ++ FG +    N +  ID+  + G L+ A  V   M  + + ++
Sbjct: 485 HGGRLYEGIDYFMGLSQD-FGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVA 543

Query: 419 WTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACS 462
             +++    +HGD R       ++   E  +P     +  +YA +
Sbjct: 544 LVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAA 588


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/553 (38%), Positives = 340/553 (61%), Gaps = 37/553 (6%)

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV--EPDEMVLSKILSACSRA 231
           +F  + Y     W+ +I G   +      +  +  M  SN     D +  S  L AC+RA
Sbjct: 57  IFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARA 116

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
             L+  EA+              L S L+    N                 ++++ T ++
Sbjct: 117 --LARSEAIQ-------------LHSQLLRFGFN----------------ADVLLQTTLL 145

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG-MKPDK 350
             Y++ G ++ A+ +FD+M + D+  W+A+I+G+A+ + P +A+  F  M+V G ++P+ 
Sbjct: 146 DAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNA 205

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           VT+   + AC+ LG L + + +H YI +     +++V N +IDMYAKCGS++ A  VFE 
Sbjct: 206 VTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFEN 265

Query: 411 MR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
           MR  +++I+W +MI AFA+HGD   AL  F K+    + P+ V+++ VL AC+HAGLV++
Sbjct: 266 MRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVED 325

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G ++F SMT +  + P  +HYG MVDL GRA  L+EA ++V ++PF PN+V+W +L+ AC
Sbjct: 326 GLKLFNSMT-QRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGAC 383

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
           R +G++E+AE A+++L+++     G  VLLSN+YA  +RW DVG +R +M+ R + K   
Sbjct: 384 RTYGDVEMAELASRKLVEMGFISCGXFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPG 443

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
            S IE+  ++Y+F+  D+SH    +IY KL+E+   +K  GY  D  + L D+ DE+K  
Sbjct: 444 FSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDEDKEN 503

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
            + +HSEKLA+ +GL  +++ + I+++KNLR+C DCH  IKL+SK+Y REI++RDRTRFH
Sbjct: 504 ALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFH 563

Query: 710 HYKDGVCSCKDYW 722
            +K+G+CSCKDYW
Sbjct: 564 RFKEGLCSCKDYW 576



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 202/422 (47%), Gaps = 42/422 (9%)

Query: 19  ISSCSSLTHMKQTHAQILKLS--HSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
           +  CSS + +KQ  A ++     H   S+  LL    ++SF         L YAL IF  
Sbjct: 8   LQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFG-------DLSYALHIFRY 60

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKML-NEGL-TIDRFSFPPILKAIARAEGLL 134
           IP P +   N  IR  + S  P +A+  +  M  + GL  ID  +    LKA ARA    
Sbjct: 61  IPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARS 120

Query: 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
           E +Q+H    + GF +D  +QT L+  Y   G +  A+ +FD+M   DI  W+ +I G+ 
Sbjct: 121 EAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFA 180

Query: 195 QNGLFDEVLNLFEEMKM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
           Q     + +  F+ MK+  N+ P+ + +   L ACS+ G L  GE+VH++I++  +  + 
Sbjct: 181 QGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNV 240

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
            + + +I MYA CG MD A  +F+                              +   +K
Sbjct: 241 QVCNVVIDMYAKCGSMDKAYWVFE------------------------------NMRCDK 270

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
            LI W+ MI  +A +    +AL LF ++   GM PD V+ L+V+ AC H G+++   ++ 
Sbjct: 271 SLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLF 330

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
             + +     +++   +++D+  + G L+ A ++   +   N++ W +++ A   +GD  
Sbjct: 331 NSMTQRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPNMVLWQTLLGACRTYGDVE 390

Query: 434 NA 435
            A
Sbjct: 391 MA 392



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 134/310 (43%), Gaps = 12/310 (3%)

Query: 12  TLPTSTAISSCS---SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY 68
            L  S A+ +C+   + +   Q H+Q+L+   +    + LL   LL +++        L 
Sbjct: 103 ALTCSFALKACARALARSEAIQLHSQLLRFGFN---ADVLLQTTLLDAYA----KIGDLD 155

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAI 127
            A  +F ++P P     N  I   +   RP  A+  F +M  +G L  +  +    L A 
Sbjct: 156 LAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLAC 215

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY-RDIVPW 186
           ++   L EG  VH    +    S+  V   ++ MY  CG +  A  +F+ M   + ++ W
Sbjct: 216 SQLGALKEGESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITW 275

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + MI  +  +G   + L+LFE++  S + PD +    +L AC+ AG +  G  +   +  
Sbjct: 276 NTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQ 335

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
             +  +     +++ +    G +  A  +   +   N+V+   ++      G VE A L 
Sbjct: 336 RGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPNMVLWQTLLGACRTYGDVEMAELA 395

Query: 307 FDQMVEKDLI 316
             ++VE   I
Sbjct: 396 SRKLVEMGFI 405


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/553 (38%), Positives = 340/553 (61%), Gaps = 37/553 (6%)

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV--EPDEMVLSKILSACSRA 231
           +F  + Y     W+ +I G   +      +  +  M  SN     D +  S  L AC+RA
Sbjct: 57  IFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARA 116

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
             L+  EA+              L S L+    N                 ++++ T ++
Sbjct: 117 --LARSEAIQ-------------LHSQLLRFGFN----------------ADVLLQTTLL 145

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG-MKPDK 350
             Y++ G ++ A+ +FD+M + D+  W+A+I+G+A+ + P +A+  F  M+V G ++P+ 
Sbjct: 146 DAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNA 205

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           VT+   + AC+ LG L + + +H YI +     +++V N +IDMYAKCGS++ A  VFE 
Sbjct: 206 VTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFEN 265

Query: 411 MR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
           MR  +++I+W +MI AFA+HGD   AL  F K+    + P+ V+++ VL AC+HAGLV++
Sbjct: 266 MRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVED 325

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G ++F SMT +  + P  +HYG MVDL GRA  L+EA ++V ++PF PN+V+W +L+ AC
Sbjct: 326 GLKLFNSMT-QRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGAC 383

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
           R +G++E+AE A+++L+++     G  VLLSN+YA  +RW DVG +R +M+ R + K   
Sbjct: 384 RTYGDVEMAELASRKLVEMGFISCGDFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPG 443

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
            S IE+  ++Y+F+  D+SH    +IY KL+E+   +K  GY  D  + L D+ DE+K  
Sbjct: 444 FSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDEDKEN 503

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
            + +HSEKLA+ +GL  +++ + I+++KNLR+C DCH  IKL+SK+Y REI++RDRTRFH
Sbjct: 504 ALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFH 563

Query: 710 HYKDGVCSCKDYW 722
            +K+G+CSCKDYW
Sbjct: 564 RFKEGLCSCKDYW 576



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 202/422 (47%), Gaps = 42/422 (9%)

Query: 19  ISSCSSLTHMKQTHAQILKLS--HSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
           +  CSS + +KQ  A ++     H   S+  LL    ++SF         L YAL IF  
Sbjct: 8   LQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFG-------DLSYALHIFRY 60

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKML-NEGL-TIDRFSFPPILKAIARAEGLL 134
           IP P +   N  IR  + S  P +A+  +  M  + GL  ID  +    LKA ARA    
Sbjct: 61  IPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARS 120

Query: 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
           E +Q+H    + GF +D  +QT L+  Y   G +  A+ +FD+M   DI  W+ +I G+ 
Sbjct: 121 EAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFA 180

Query: 195 QNGLFDEVLNLFEEMKM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA 253
           Q     + +  F+ MK+  N+ P+ + +   L ACS+ G L  GE+VH++I++  +  + 
Sbjct: 181 QGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNV 240

Query: 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313
            + + +I MYA CG MD A  +F+                              +   +K
Sbjct: 241 QVCNVVIDMYAKCGSMDKAYWVFE------------------------------NMRCDK 270

Query: 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373
            LI W+ MI  +A +    +AL LF ++   GM PD V+ L+V+ AC H G+++   ++ 
Sbjct: 271 SLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLF 330

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433
             + +     +++   +++D+  + G L+ A ++   +   N++ W +++ A   +GD  
Sbjct: 331 NSMTQRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPNMVLWQTLLGACRTYGDVE 390

Query: 434 NA 435
            A
Sbjct: 391 MA 392



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 134/310 (43%), Gaps = 12/310 (3%)

Query: 12  TLPTSTAISSCS---SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLY 68
            L  S A+ +C+   + +   Q H+Q+L+   +    + LL   LL +++        L 
Sbjct: 103 ALTCSFALKACARALARSEAIQLHSQLLRFGFN---ADVLLQTTLLDAYA----KIGDLD 155

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAI 127
            A  +F ++P P     N  I   +   RP  A+  F +M  +G L  +  +    L A 
Sbjct: 156 LAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLAC 215

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY-RDIVPW 186
           ++   L EG  VH    +    S+  V   ++ MY  CG +  A  +F+ M   + ++ W
Sbjct: 216 SQLGALKEGESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITW 275

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + MI  +  +G   + L+LFE++  S + PD +    +L AC+ AG +  G  +   +  
Sbjct: 276 NTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQ 335

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
             +  +     +++ +    G +  A  +   +   N+V+   ++      G VE A L 
Sbjct: 336 RGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPNMVLWQTLLGACRTYGDVEMAELA 395

Query: 307 FDQMVEKDLI 316
             ++VE   I
Sbjct: 396 SRKLVEMGFI 405


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/601 (38%), Positives = 342/601 (56%), Gaps = 48/601 (7%)

Query: 22  CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPP 81
           CSSL  +KQ HAQ+LK   ++  + S + + L+ +FSL       +  A+++F+QI  P 
Sbjct: 27  CSSLNQVKQIHAQVLK---ANLHRESFVGQKLIAAFSLC----RQMTLAVNVFNQIQDPD 79

Query: 82  SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG 141
             + N  IRA   +  P  A  VF +M + G+  D F++P +LKA +    +     +H 
Sbjct: 80  VLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHA 139

Query: 142 LGTKLGFGSDPFVQTGLVGMYGACG--KILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF 199
              K+GF  D FV   L+  Y  CG   +  AR +F+ M+ RD V W+ MI G  + G  
Sbjct: 140 QVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGEL 199

Query: 200 DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259
            E   LF+EM      P+   +S                                  +T+
Sbjct: 200 GEARRLFDEM------PERDTVS---------------------------------WNTI 220

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWS 319
           +  Y   G M+ A  LF+K+  +N+V  + MV GYS+AG ++ AR++FD+M  K+L+ W+
Sbjct: 221 LDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWT 280

Query: 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379
            MISGYAE    ++A+ L+N+M+  G+K D  T++S++SACA  G+L   +R+H  I++ 
Sbjct: 281 IMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERT 340

Query: 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFF 439
            F     V+NA+IDMYAKCGSLE+A  +F  M R++V+SW ++I   A+HG    AL  F
Sbjct: 341 RFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLF 400

Query: 440 NKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499
           ++MK E   P+ VTF+GVL AC+HAG VDEG   F +M  +Y +PP+ EHYGCMVDL GR
Sbjct: 401 SRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGR 460

Query: 500 ANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLL 559
              L+EA  LV +MP  PN +IWG+L+ ACR+H    LAE    +L++ +    G L +L
Sbjct: 461 GGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSML 520

Query: 560 SNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKL 619
           SNIYA    W +   +R  MK   I K    S IE+++EV+EF   DRSH ++D+IY+ +
Sbjct: 521 SNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHEFTVFDRSHPKSDRIYKTI 580

Query: 620 N 620
           +
Sbjct: 581 D 581


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 339/578 (58%), Gaps = 6/578 (1%)

Query: 62  TTPSSLYYALSIFSQIP-APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120
           + P  L +A ++ +Q    P + +    +R    + +P HAL +F ++L + L  D  + 
Sbjct: 76  SDPPRLAHAAAVLAQCAEGPNAYMLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTI 135

Query: 121 PPILKAIARAEGLLEGMQVHGLGTKLGF-GSDPFVQTGLVGMYGACGKILDARLMFDKMS 179
              +KA   +    E   +H +  K GF G    V   LV MY +   + DAR +FD+M+
Sbjct: 136 VFAVKAATTSSSPAEA--IHCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMA 193

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE-PDEMVLSKILSACSRAGNLSYGE 238
            RD+V W+ ++DGY + GL DE   +F  M ++    P+E+ L    SA  + G L  G 
Sbjct: 194 DRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGR 253

Query: 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298
            VH+ ++++ V +  +L++ L+ M+  CGC+  AK +FD + +K++   T+MVS Y++ G
Sbjct: 254 MVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCG 313

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
            +E+A  +F ++  ++ + WS M++ Y++ N P+EA+++FN+M   G++P   T++SV+S
Sbjct: 314 DLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLS 373

Query: 359 ACAHLGVLDQAQRIH-LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
           ACA LG LD  + ++  YI  +     + ++NA IDM+AKCG + +A  +F  M  +NV+
Sbjct: 374 ACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVV 433

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
           SW +MI A A+HG +  AL  F K K   I P+ +T+IGVL ACSH+GLV EGR  F  M
Sbjct: 434 SWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEM 493

Query: 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537
              Y I P+ EHY CM+DL G+  LL EA E+  +MP   +   WG+L+ ACR+HG +E+
Sbjct: 494 KIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGNVEI 553

Query: 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNN 597
            + AA +L+ LDP   G  VL+S IYA   +W  V  +R  M++RG+ K   CS IE++ 
Sbjct: 554 GKCAADKLVGLDPSDSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCSSIEVDG 613

Query: 598 EVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
           + +EFL AD SH  ++ IY  L  +    K  GY+  +
Sbjct: 614 KFHEFLAADVSHAHSEDIYAALENIYLHSKLEGYISHV 651


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/645 (36%), Positives = 357/645 (55%), Gaps = 31/645 (4%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSI 73
           P    I +C +L  +K  HA++L  S    S+   ++  LL  +S    T     YA  +
Sbjct: 4   PILHIIHNCKTLKSLKSIHARLLIESSVASSE--FVINKLLRLYSRFGATD----YAHKV 57

Query: 74  FSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGL 133
           F +I  P + +    I     + +   A  +F++M  E +++  F+   +LKA+AR    
Sbjct: 58  FDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRF 117

Query: 134 LEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGY 193
             G  V+G   K GF  D  VQ  ++ ++  C K+  AR  FD+M  +DIV W++MI GY
Sbjct: 118 KGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGY 177

Query: 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA---------------------- 231
             N   D     F+ M   NV     ++   + A   A                      
Sbjct: 178 GNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVS 237

Query: 232 GNLSYGEAVHEFIIDNNVAL-DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
           G +  G+ V+  II   + + D    + +I+ +   G ++ AK  FD++  KN++    M
Sbjct: 238 GYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIM 297

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           + GY + G    AR +FDQM  K+L+ WS MI GYA N  P +AL+LF   +   +KPD+
Sbjct: 298 LDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDE 357

Query: 351 VTMLSVISACAHLGVLDQAQRI-HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
             +L +ISAC+ LG++D A+ I H Y+  +    DLRV  ++IDMYAKCGS+E A ++FE
Sbjct: 358 TFILGIISACSQLGIIDAAESIIHNYVGPSLLS-DLRVFTSLIDMYAKCGSIEKALQMFE 416

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
               ++++ +++MI A A HG  R+A+  F+KM+  +I P+ VTF+GVL AC+H GLVDE
Sbjct: 417 MAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDE 476

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           GR+ F  MT E+ I P  +HY C+VDL GR   L EA  L+  MP AP+ V+WG+L+AAC
Sbjct: 477 GRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAAC 536

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
           RVH  ++LAE AA +L +++PD+ G  +LLSNIYA   RW  V ++R  ++E  + K R 
Sbjct: 537 RVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRG 596

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPD 634
            S IE+++ V+EF+  D SH  +D I   L  +  ++K +GY+ D
Sbjct: 597 SSWIELSHVVHEFVMGDMSHTDSDSISLILYLLCEDMKLSGYLID 641


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/687 (34%), Positives = 372/687 (54%), Gaps = 77/687 (11%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVF------------------------ 105
           A  +F Q+P+P   +  K I   + S+R   AL +F                        
Sbjct: 54  AREVFDQVPSPHVSLYTKMISGYTRSNRLVDALNLFDEMPLRDVVSWNSMISGCVECGDI 113

Query: 106 ---LKMLNEGLTIDRFSFPPILKAIAR------AEGLLEGMQVHGLGTKLGFGSDPFVQT 156
              +KM +E       S+  ++    R      AE L   M V           D     
Sbjct: 114 DTAVKMFDEMPERSVVSWTAMVNGCFRFGMVDQAERLFCQMPV----------KDIAAWN 163

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
            +V  Y   GK+ DA  +F +M  ++++ W+ MI G  QN    E LNLF+ M    ++ 
Sbjct: 164 AMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKS 223

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
                + +++AC+ A     G  VH FII +    + ++ ++LIT+YANC          
Sbjct: 224 TSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCK--------- 274

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
                                 + ED+R +F +MV + +  W+A++SGY+ N   ++AL 
Sbjct: 275 ----------------------RTEDSRKVFGEMVHEKVAVWTALLSGYSLNRKHEDALN 312

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           +F+EM    + P++ T  S +++C+ LG LD  + IH    K   G    V N+++ MY+
Sbjct: 313 VFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIHGVAVKLGLGTVAFVGNSLVVMYS 372

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
             G++  A  VF  + +++++SW S+I   A HG  + A + F +M   + +P+ +TF G
Sbjct: 373 DSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTG 432

Query: 457 VLYACSHAGLVDEGREIFASMTNEYN-IPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
           +L ACSH G + +GR++F  +++  N I  K +HY CMVD+ GR   L+EA +L+E+M  
Sbjct: 433 LLSACSHCGFLQKGRKLFYYISSGLNHIDRKIQHYTCMVDILGRCGELKEAEKLIESMVV 492

Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575
            PN ++W +L++ACR+H +++  E AA  +  LD     A VLLSNIYA   RW  V +L
Sbjct: 493 KPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSSVSKL 552

Query: 576 RKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDI 635
           R  MK++GI+K+   S + +  + +EF + DR H    +I+EKL  +  +LK  GYVPD 
Sbjct: 553 RVKMKQKGIMKKPGSSWVVIRGKKHEFFSGDRPH--CLRIFEKLEFLREKLKELGYVPDY 610

Query: 636 HSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKV 695
            SAL D+EDE+K E++ +HSE+LA+ +GLI++ + S + ++KNLRVCEDCH  IKL+S+V
Sbjct: 611 RSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSTVTVMKNLRVCEDCHTVIKLISRV 670

Query: 696 YAREIVIRDRTRFHHYKDGVCSCKDYW 722
              +IV+RD TRFHH+K+G+CSC DYW
Sbjct: 671 VGCKIVLRDPTRFHHFKNGMCSCGDYW 697



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 197/387 (50%), Gaps = 16/387 (4%)

Query: 170 DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229
           +AR +FD++    +  ++ MI GY ++    + LNLF+EM + +V    +  + ++S C 
Sbjct: 53  EAREVFDQVPSPHVSLYTKMISGYTRSNRLVDALNLFDEMPLRDV----VSWNSMISGCV 108

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC---GCMDMAKGLFDKVLLKNLVV 286
             G++     + + + + +V        +   M   C   G +D A+ LF ++ +K++  
Sbjct: 109 ECGDIDTAVKMFDEMPERSVV-------SWTAMVNGCFRFGMVDQAERLFCQMPVKDIAA 161

Query: 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346
             AMV GY + G+V+DA  +F QM  K++I W+ MI G  +N    EAL LF  M  C +
Sbjct: 162 WNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCI 221

Query: 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESARE 406
           K    T   VI+ACA+        ++H +I K+ F  +  V  ++I +YA C   E +R+
Sbjct: 222 KSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRK 281

Query: 407 VFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL 466
           VF  M    V  WT++++ ++++    +AL  F++M   SI PN  TF   L +CS  G 
Sbjct: 282 VFGEMVHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGT 341

Query: 467 VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLM 526
           +D G+EI   +  +  +         +V ++  +  + +A+ +   + F  ++V W S++
Sbjct: 342 LDWGKEIHG-VAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEI-FKKSIVSWNSII 399

Query: 527 AACRVHGEIELAEFAAKQLLQLDPDHD 553
             C  HG  + A     Q+++L+ + D
Sbjct: 400 VGCAQHGRGKWAFVIFGQMIRLNKEPD 426


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/641 (32%), Positives = 372/641 (58%), Gaps = 17/641 (2%)

Query: 89  IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148
           I  +   +R K AL++  ++     ++    +  ++++  ++  L +G +VH      GF
Sbjct: 46  IHILCQQNRLKEALQILHQIDKPSASV----YSTLIQSCIKSRLLQQGKKVHQHIKLSGF 101

Query: 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
               F+   L+ MY  C  ++D++ +FD+M  RD+  W+++I GY + GL  E  +LF++
Sbjct: 102 VPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDK 161

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII---DNNVALDAHLQSTLITMYAN 265
           M     E D    + ++S   R    +  EA+  F +    +N   +    S+ +   A 
Sbjct: 162 MP----ERDNFSWTAMISGYVRHDRPN--EALELFRMMKRSDNSKSNKFTVSSALAAAAA 215

Query: 266 CGCMDMAKGLFDKVLLKNL----VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321
             C+ + K +   ++   L    VV +A+   Y + G +E+AR IFD+MV++D++ W+AM
Sbjct: 216 VPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAM 275

Query: 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF 381
           I  Y ++   +E   LF ++   G++P++ T   V++ACA+    +  +++H Y+ +  F
Sbjct: 276 IDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGF 335

Query: 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNK 441
                  +A++ MY+KCG++ SA  VF+   + ++ SWTS+I  +A +G    A+ +F  
Sbjct: 336 DPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFEL 395

Query: 442 MKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501
           +      P+ +TF+GVL AC+HAGLVD+G + F S+  +Y +    +HY C++DL  R+ 
Sbjct: 396 LVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSG 455

Query: 502 LLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSN 561
              EA  ++  M   P+  +W SL+  CR+HG ++LA+ AA+ L +++P++    V L+N
Sbjct: 456 QFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLAN 515

Query: 562 IYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNE 621
           IYA    W +V ++RK+M +RG++K+   S I +  +V+ FL  D SH ++ +I E L +
Sbjct: 516 IYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGK 575

Query: 622 VISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRV 681
           +   +K  G+VPD +  L D+EDE+K + + +HSEKLA+ +G+IS+ + + I++ KNLR 
Sbjct: 576 LSKRMKEEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRT 635

Query: 682 CEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           C DCH  IK +SK+  R+I++RD  RFH ++DG CSC+DYW
Sbjct: 636 CVDCHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/622 (34%), Positives = 353/622 (56%), Gaps = 32/622 (5%)

Query: 102 LKVFLKMLN-EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
           L++F  M++ + +  + + F  I+ + + +  ++EG Q HG   K G     +V+  L+ 
Sbjct: 113 LRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALIC 172

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
           MY     +  A  ++ ++   D+  ++++I+G  +NG   E L + + M    +  D + 
Sbjct: 173 MYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVT 232

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
                  CS   +L  G  VH  +       D+ + S +I MY  C              
Sbjct: 233 YVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKC-------------- 278

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
                            G + +AR +F+++  K+++ W+A+++ Y++N   +EAL  F E
Sbjct: 279 -----------------GNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPE 321

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS 400
           M+V G+ P++ T   ++++CA +  L   + +H  I K+ F   + V NA+I+MY+K GS
Sbjct: 322 MEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGS 381

Query: 401 LESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460
           +E+A +VF  M  R+ I+W++MI   + HG  R AL+ F +M      P+ VTF+GVL A
Sbjct: 382 IEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSA 441

Query: 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520
           C+H G V EG      +  +  I P  EHY C+V L  +A  L EA   +++ P   +VV
Sbjct: 442 CAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVV 501

Query: 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580
            W +L++AC VH    L +  A+ +LQ+DP   G  +LLSN+YAK KRW  V ++RK M+
Sbjct: 502 AWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMR 561

Query: 581 ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640
           ER + KE   S IE+ N ++ F++  ++H +++QIYEK+ E+++ ++P GYVPDI +   
Sbjct: 562 ERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYVPDIAAVFH 621

Query: 641 DLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREI 700
           D+EDE+KRE + +HSEKLA+ YGL+ +   + IR++KNLR+C DCH+ +KL+SKV  R I
Sbjct: 622 DVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVKLISKVTNRMI 681

Query: 701 VIRDRTRFHHYKDGVCSCKDYW 722
           ++RD  RFH + DG CSC DYW
Sbjct: 682 IVRDANRFHCFGDGGCSCADYW 703



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 205/428 (47%), Gaps = 47/428 (10%)

Query: 9   KPLTLPTSTAISSCS---SLTHMKQTHAQILK--LSHSHHSQNSLLLKLLLTSFSLPTTT 63
           +P     +T ISSCS    +    Q H   LK  L    + +N+L+            + 
Sbjct: 126 RPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMY---------SR 176

Query: 64  PSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123
            S +  A+S++ ++P       N  I  +  +  P  AL+V  +M++E +  D  ++   
Sbjct: 177 RSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTA 236

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
               +  + L  G+QVH    + G   D FV + ++ MYG CG IL+AR +F+++  +++
Sbjct: 237 FGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNV 296

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           V W+ ++  Y QNG F+E LN F EM++  + P+E   + +L++C+    L +G+ +H  
Sbjct: 297 VSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTR 356

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           I                             G  D +++ N     A+++ YS++G +E A
Sbjct: 357 I--------------------------KKSGFEDHIIVGN-----ALINMYSKSGSIEAA 385

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
             +F +M+ +D I WSAMI G + +   +EAL +F EM      P  VT + V+SACAHL
Sbjct: 386 HKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHL 445

Query: 364 GVLDQA-QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTS 421
           G + +    ++  + +      +     I+ +  K G L+ A    +    + +V++W +
Sbjct: 446 GSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRT 505

Query: 422 MINAFAIH 429
           +++A  +H
Sbjct: 506 LLSACHVH 513


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/623 (37%), Positives = 343/623 (55%), Gaps = 49/623 (7%)

Query: 8   TKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSL 67
           T+ L     + +  C++L  +KQ HAQILK   S+   +  ++  L+++FSL       +
Sbjct: 16  TRKLLEQKLSDLHKCTNLNQVKQLHAQILK---SNLHVDLFVVPKLISAFSLC----RQM 68

Query: 68  YYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
             A + F+Q+  P   + N  IRA S + +P  A   F  M  +G   D F+FP +LK  
Sbjct: 69  LLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVC 128

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK--ILDARLMFDKM-SYRDIV 184
                L     VH    K GF SD FV   L+  Y  CG   I  A+ +F  M + RD+V
Sbjct: 129 TGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVV 188

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ MI G  + GL++E   +F+EM      P++                          
Sbjct: 189 SWNSMISGLAKGGLYEEARKVFDEM------PEK-------------------------- 216

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
                  D    +T++  Y   G MD A  LFD++  +N+V  + MV GY +AG +E AR
Sbjct: 217 -------DGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMAR 269

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
           ++FD+M  K+L+ W+ ++SG+AE    +EA+ LF++M+   +K D  T++S+++ACA  G
Sbjct: 270 MLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAESG 329

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
           +L   ++IH  I  N F     ++NA++DMYAKCG L  A +VF  ++ ++V+SW +M+ 
Sbjct: 330 LLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQ 389

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
             A+HG    AL  F +MK+E   PN VT IGVL AC+HAGL+D+G   F++M  +Y + 
Sbjct: 390 GLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLV 449

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544
           P+ EHYGCMVDL GR   L EA+ L+  MP APN +IWG+L+ ACR+H  +ELA      
Sbjct: 450 PEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNAVELAREVLDH 509

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           L++L+P   G   +LSNIYA    W  V   R  M+  G  K    S IE+NNEV+EF  
Sbjct: 510 LVELEPTDSGNFSMLSNIYAAAGDWNCVANTRLRMRSIGTKKPSGASSIEVNNEVHEFTV 569

Query: 605 ADRSHKQTDQIYEKLNEVISELK 627
            DRSH ++D IY+ +N +  ELK
Sbjct: 570 FDRSHPKSDNIYQVINGLRHELK 592


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1134

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/629 (36%), Positives = 344/629 (54%), Gaps = 39/629 (6%)

Query: 101  ALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160
            +L +F +M  +G+  + F+F   LKA      L +G+Q+HG   K+GF     V   LV 
Sbjct: 454  SLSLFTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVD 513

Query: 161  MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE--PDE 218
            MY  CG+I +A  +F  M  R ++ W+ MI GY   G     L  F  M+ + ++  PDE
Sbjct: 514  MYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDE 573

Query: 219  MVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL--DAHLQSTLITMYANCGCMDMAKGLF 276
              L+ +L ACS  G +  G+ +H F++ +       A +  +L+ +Y  CG       LF
Sbjct: 574  FTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCG------NLF 627

Query: 277  DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
                                      AR  FDQ+ EK +I WS++I GYA+     EA+ 
Sbjct: 628  S-------------------------ARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMG 662

Query: 337  LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
            LF  +Q    + D   + S+I   A   +L Q +++   + K   G +  V+N+++DMY 
Sbjct: 663  LFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYL 722

Query: 397  KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
            KCG ++ A + F  M+ ++VISWT MI  +  HG  + A+  FNKM   +I+P+ V ++ 
Sbjct: 723  KCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLA 782

Query: 457  VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516
            VL ACSH+G++ EG E+F+ +     I P+ EHY C+VDL GRA  L+EA  LV+TMP  
Sbjct: 783  VLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIK 842

Query: 517  PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576
            PNV IW +L++ CRVHG+IEL +   K LL++D  +    V++SN+Y +   W + G  R
Sbjct: 843  PNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNPANYVMMSNLYGQAGYWNEQGNAR 902

Query: 577  KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPA-GYVPDI 635
            +    +G+ KE   S +E+  EV+ F + + SH  T  I E L EV   L+   GYV  +
Sbjct: 903  ELGSIKGLQKEAGMSWVEIEREVHFFRSGEDSHPLTLVIQETLKEVERRLREELGYVYGL 962

Query: 636  HSALVDLEDEEKREVILWHSEKLALCYGLIS---SKKDSCIRIVKNLRVCEDCHNFIKLV 692
               L D++DE K E +  HSEKLA+   L +   ++K   IR+ KNLRVC DCH FIK +
Sbjct: 963  KHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGL 1022

Query: 693  SKVYAREIVIRDRTRFHHYKDGVCSCKDY 721
            SK+     V+RD  RFH ++DG CSC DY
Sbjct: 1023 SKITKIAYVVRDAVRFHSFEDGCCSCGDY 1051



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 202/422 (47%), Gaps = 43/422 (10%)

Query: 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLF 206
           G G +      L+ MY  C + L A  +FD M  R++V W+ ++ G+  NG  +  L+LF
Sbjct: 399 GSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLF 458

Query: 207 EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
            EM    + P+E   S  L AC     L  G  +H F +     +   + ++L+ MY+ C
Sbjct: 459 TEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKC 518

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
           G ++ A+ +F  ++ ++L+   AM++GY  AG                            
Sbjct: 519 GRINEAEKVFRWMVGRSLISWNAMIAGYVHAG---------------------------- 550

Query: 327 ENNHPQEALKLFNEMQVCGMK--PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF--G 382
              +   AL  F  MQ   +K  PD+ T+ S++ AC+  G++   ++IH ++ ++ F   
Sbjct: 551 ---YGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCP 607

Query: 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442
               +  +++D+Y KCG+L SAR+ F++++ + +ISW+S+I  +A  GD   A+  F ++
Sbjct: 608 SSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRL 667

Query: 443 KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH--YGCMVDLFGRA 500
           ++ S   +      ++   +   L+ +G+++ A +     +P   E      +VD++ + 
Sbjct: 668 QELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVV---KLPSGLETSVSNSLVDMYLKC 724

Query: 501 NLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ--LDPDHDGALVL 558
            L+ EA +    M    +V+ W  ++     HG  + A     ++L+  ++PD    L +
Sbjct: 725 GLVDEAEKCFAEMQL-KDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAV 783

Query: 559 LS 560
           LS
Sbjct: 784 LS 785



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 5/283 (1%)

Query: 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342
           NL+ S  ++  Y +  +   A  +FD M E++++ W+A++SG+  N     +L LF EM 
Sbjct: 403 NLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMG 462

Query: 343 VCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402
             G+ P++ T  + + AC  L  L++  +IH +  K  F   + V N+++DMY+KCG + 
Sbjct: 463 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 522

Query: 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID--PNGVTFIGVLYA 460
            A +VF  M  R++ISW +MI  +   G    AL  F  M++  I   P+  T   +L A
Sbjct: 523 EAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKA 582

Query: 461 CSHAGLVDEGREIFASMTNE-YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV 519
           CS  G++  G++I   +    ++ P      G +VDL+ +   L  A +  + +     +
Sbjct: 583 CSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIK-EKTM 641

Query: 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562
           + W SL+      G+   A    K+L +L    D + VL S I
Sbjct: 642 ISWSSLILGYAQEGDFVEAMGLFKRLQELSSQID-SFVLSSII 683



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 21/218 (9%)

Query: 345 GMKPDKVTMLSVISACAHL---------GVLDQAQRIHLYIDKNA------FGGDLRVNN 389
           G    +   L + S C HL          VL+    +   I  N+       G +L  +N
Sbjct: 349 GSSESQTATLCLCSFCQHLLHSPTEEDSHVLENCYVLEFIIFTNSNFRLSGSGLNLITSN 408

Query: 390 AIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449
            +IDMY KC     A +VF+ M  RNV+SWT++++   ++GD   +L  F +M  + I P
Sbjct: 409 YLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYP 468

Query: 450 NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509
           N  TF   L AC     +++G +I      +       E    +VD++ +   + EA ++
Sbjct: 469 NEFTFSTNLKACGLLNALEKGLQIHG-FCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKV 527

Query: 510 VETMPFAPNVVIWGSLMAACRVH---GEIELAEFAAKQ 544
              M    +++ W +++A   VH   G   LA F   Q
Sbjct: 528 FRWM-VGRSLISWNAMIAG-YVHAGYGSRALATFGMMQ 563


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/640 (34%), Positives = 360/640 (56%), Gaps = 36/640 (5%)

Query: 84  VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLG 143
           V N  + +   S+R   A ++F +M      ID F+F  +L A    + ++ G Q+H   
Sbjct: 181 VGNTLVDSYCKSNRLDLACQLFKEMPE----IDSFTFAAVLCANIGLDDIVLGQQIHSFV 236

Query: 144 TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203
            K  F  + FV   L+  Y     ++DAR +FD+M  +D V ++V+I GY  +G      
Sbjct: 237 IKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAF 296

Query: 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
           +LF E++ +  +  +   + +LS  S   +   G  +H   I      +  + ++L+ MY
Sbjct: 297 DLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMY 356

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
           A C                               G+ E+A +IF  +  +  + W+AMIS
Sbjct: 357 AKC-------------------------------GKFEEAEMIFTNLTHRSAVPWTAMIS 385

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
            Y +    +E L+LFN+M+   +  D+ T  S++ A A +  L   +++H +I K+ F  
Sbjct: 386 AYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMS 445

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
           ++   +A++D+YAKCGS++ A + F+ M  RN++SW +MI+A+A +G+A   L  F +M 
Sbjct: 446 NVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMV 505

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
              + P+ V+F+GVL ACSH+GLV+EG   F SMT  Y + P+ EHY  +VD+  R+   
Sbjct: 506 LSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRF 565

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA-LVLLSNI 562
            EA +L+  MP  P+ ++W S++ ACR+H   ELA  AA QL  ++   D A  V +SNI
Sbjct: 566 NEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNI 625

Query: 563 YAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEV 622
           YA   +W++V ++ K+M++RG+ K  A S +E+ +E + F   DR H Q ++I +K++ +
Sbjct: 626 YAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDML 685

Query: 623 ISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVC 682
              ++  GY PD   AL + +++ K E + +HSE+LA+ + LIS+ + S I ++KNLR C
Sbjct: 686 TKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRAC 745

Query: 683 EDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
            DCH  IK++SK+  REI +RD TRFHH++DG CSC D+W
Sbjct: 746 IDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 785



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 205/442 (46%), Gaps = 43/442 (9%)

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           ++  Y   G + +AR +FD M  R  V W+++I GY Q   F E   LF +M+    EPD
Sbjct: 84  MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPD 143

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL--QSTLITMYANCGCMDMAKGL 275
            +    +LS C+     +    V   II   +  D+ L   +TL+  Y     +D+A  L
Sbjct: 144 YVTFVTLLSGCNGHEMGNQITQVQTQII--KLGYDSRLIVGNTLVDSYCKSNRLDLACQL 201

Query: 276 F---------------------DKVLLK--------------NLVVSTAMVSGYSRAGQV 300
           F                     D ++L               N+ VS A++  YS+   V
Sbjct: 202 FKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSV 261

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
            DAR +FD+M E+D + ++ +ISGYA +   + A  LF E+Q       +    +++S  
Sbjct: 262 IDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIA 321

Query: 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
           ++    +  ++IH          ++ V N+++DMYAKCG  E A  +F  +  R+ + WT
Sbjct: 322 SNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWT 381

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +MI+A+   G     L  FNKM+  S+  +  TF  +L A +    +  G+++ + +   
Sbjct: 382 AMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKS 441

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE--LA 538
             +   +     ++D++ +   +++A++  + MP   N+V W ++++A   +GE E  L 
Sbjct: 442 GFMSNVFSG-SALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISAYAQNGEAEATLK 499

Query: 539 EFAAKQLLQLDPDHDGALVLLS 560
            F    L  L PD    L +LS
Sbjct: 500 SFKEMVLSGLQPDSVSFLGVLS 521



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 169/367 (46%), Gaps = 35/367 (9%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
           S+  A  +F ++P       N  I   +W  + K+A  +F ++        +F F  +L 
Sbjct: 260 SVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLS 319

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
             +       G Q+H         S+  V   LV MY  CGK  +A ++F  +++R  VP
Sbjct: 320 IASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVP 379

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ MI  Y Q G ++E L LF +M+ ++V  D+   + +L A +   +LS G+ +H FII
Sbjct: 380 WTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFII 439

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
            +    +    S L+ +YA CG +  A   F ++  +N+V   AM+S Y++ G+ E    
Sbjct: 440 KSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAE---- 495

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
                                        LK F EM + G++PD V+ L V+SAC+H G+
Sbjct: 496 ---------------------------ATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGL 528

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSM 422
           +++    H       +  D R  +  +++DM  + G    A ++   M    + I W+S+
Sbjct: 529 VEEG-LWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSV 587

Query: 423 INAFAIH 429
           +NA  IH
Sbjct: 588 LNACRIH 594



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 95/159 (59%)

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
           G +  A+ LF+K+  KN V +  M+SGY ++G + +AR +FD MVE+  + W+ +I GY+
Sbjct: 61  GELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYS 120

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
           + N  +EA +LF +MQ CG +PD VT ++++S C    + +Q  ++   I K  +   L 
Sbjct: 121 QLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLI 180

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           V N ++D Y K   L+ A ++F+ M   +  ++ +++ A
Sbjct: 181 VGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCA 219



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 13/132 (9%)

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           N +I  Y K G+L  AR++F+ M  R  ++WT +I  ++     + A   F +M+    +
Sbjct: 82  NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 141

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYN--IPPKYEHY----GCMVDLFGRANL 502
           P+ VTF+ +L  C+       G E+   +T      I   Y+        +VD + ++N 
Sbjct: 142 PDYVTFVTLLSGCN-------GHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNR 194

Query: 503 LREALELVETMP 514
           L  A +L + MP
Sbjct: 195 LDLACQLFKEMP 206



 Score = 46.2 bits (108), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 346 MKPDKVTMLSVISACAHLGV----LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401
            +P+ +  L+ +++ A L      L+    I   I K  F  D   +N  +  + K G L
Sbjct: 4   FRPNALQNLTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGEL 63

Query: 402 ESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461
             AR++FE+M  +N +S   MI+ +   G+   A   F+ M    ++   VT+  ++   
Sbjct: 64  SQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGM----VERTAVTWTILIGGY 119

Query: 462 SHAGLVDEGREIFASM 477
           S      E  E+F  M
Sbjct: 120 SQLNQFKEAFELFVQM 135


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/598 (38%), Positives = 337/598 (56%), Gaps = 45/598 (7%)

Query: 138 QVHGLGTKLGFG--SDPFVQTGLVGMYGACGK-----ILDARLMFDKMSYRDIVPW---- 186
           Q+H +  K G G  + P   T L+ +    G      +  AR +FD++ +   V W    
Sbjct: 46  QLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTL 105

Query: 187 -SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
                 G    G  +E   +F  M    V PD      +L AC+ A     G   H   +
Sbjct: 106 LRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAV 165

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
               A   ++  TLI MYA CG                                V  AR+
Sbjct: 166 KAGAAEHEYVAPTLINMYAECG-------------------------------DVRAARV 194

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +FD+M  + ++ ++AMI+    ++ P EAL LF EMQ  G+KP  VT++SV+SACA LG 
Sbjct: 195 MFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGA 254

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L+  + IH YI K      ++VN A+IDMYAKCGSLE A  VF+ M  R+  +W+ M+ A
Sbjct: 255 LELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVA 314

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
           +A HG  R A+  F +MK + + P+ VTF+GVLYACSH+G+V EG + F SM  EY I  
Sbjct: 315 YANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVS 373

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
             +HYGC+ DL  R+  L  A + ++ +P  P  ++W +L++AC  HG++++ +   +++
Sbjct: 374 GIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERI 433

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
           L+LD  H G  V+ SN+ A   RW+++  +RK M E+G++K   CS IE++N V+EF   
Sbjct: 434 LELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAG 493

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDI-HSALVDLEDEEKREVILWHSEKLALCYGL 664
           D SH  + +    ++EVI +LK  GYVP+  H   V++ +EEK   + +HSEKLA+ +GL
Sbjct: 494 DGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGL 553

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +++   + +RIVKNLRVC DCH+  KLVS V+ R I++RD  RFHH++DGVCSC DYW
Sbjct: 554 LNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 128/454 (28%), Positives = 210/454 (46%), Gaps = 38/454 (8%)

Query: 22  CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPP 81
           C+SL  + Q HA  +K      +  + + +LL          P+ L YA  +F +IP P 
Sbjct: 38  CTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPG 97

Query: 82  SRV-SNKFIRAISWSHRPKHALK----VFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
             V  N  +R  +         +    VF++M+ EG+  D ++F  +LKA A A    EG
Sbjct: 98  DVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEG 157

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
            Q HG+  K G     +V   L+ MY  CG +  AR+MFD+M    +V ++ MI    ++
Sbjct: 158 RQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRS 217

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
            L  E L LF EM+   ++P  + L  +LSAC+  G L  G  +H++I    +     + 
Sbjct: 218 SLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVN 277

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           + LI MYA CG                                +EDA  +F  M  +D  
Sbjct: 278 TALIDMYAKCG-------------------------------SLEDAIGVFQDMESRDKQ 306

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            WS M+  YA + + +EA+ +F EM+  GMKPD VT L V+ AC+H G++ +  +    +
Sbjct: 307 AWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM 366

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNA 435
            +      ++    + D+ A+ G LE A +  + +  +   I W ++++A A HGD    
Sbjct: 367 REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMG 426

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
              F ++  E  D +G  ++     C++ G  +E
Sbjct: 427 KRVFERIL-ELDDSHGGDYVIFSNLCANTGRWEE 459


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/651 (33%), Positives = 359/651 (55%), Gaps = 42/651 (6%)

Query: 101 ALKVFLKMLNEGLTI-DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           A+K F     EG+   + +++  I+ A+++A  + +   V+         S   + TGL 
Sbjct: 278 AVKFF-----EGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGL- 331

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV----- 214
                 G+I DA+++FD++   ++V W+ MI GY QN + DE  +LF  M   N      
Sbjct: 332 ---ARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAG 388

Query: 215 ---------EPDEMVLS-----------------KILSACSRAGNLSYGEAVHEFIIDNN 248
                      ++ ++S                     ACS    L  G+ VH   +   
Sbjct: 389 MIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAG 448

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              ++++ + LIT+Y     +   + +FD++ +K+ V   + +S   +    ++AR +F+
Sbjct: 449 CQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFN 508

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
            M   D++ W+ +IS  A+ +   EA+++F  M      P+   +  ++    +LG    
Sbjct: 509 NMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQL 568

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            Q+IH    K      L V NA++ MY KC S +S + VF+ M  R++ +W ++I  +A 
Sbjct: 569 GQQIHTIAIKLGMDSGLVVANALVSMYFKCSSADSLK-VFDSMEERDIFTWNTIITGYAQ 627

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG  R A+  +  M    + PN VTF+G+L+ACSH+GLVDEG + F SM+++Y + P  E
Sbjct: 628 HGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLE 687

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HY CMVDL GRA  ++ A   +  MP  P+ VIW +L+ AC++H  +E+   AA++L  +
Sbjct: 688 HYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSI 747

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           +P + G  V+LSNIY+    W +V ++RK MKERG+ K+  CS +++ N+++ F+T D  
Sbjct: 748 EPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEE 807

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
           H+Q   IY  L E+ + LK  GYVPD    L D+++E+K   +L+HSEKLA+ YGL+ + 
Sbjct: 808 HEQIQNIYATLWELYTLLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTP 867

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCK 719
           K   I+I+KNLR+C DCH FIK VS V  REI +RD  RFHH+++G CSC+
Sbjct: 868 KGMPIQIMKNLRICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSCE 918



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 192/386 (49%), Gaps = 21/386 (5%)

Query: 155 QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV 214
           Q+  +   G  G++ +AR +FD M +RDI+ W+ MI  Y  NG+ D   +L + +   N+
Sbjct: 36  QSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNL 95

Query: 215 EPDEMVLSKILSACSRAGNLSYGEAVHEFI-IDNNVALDAHLQSTLITMYANCGCMDMAK 273
               +    +LS  +RAG +     V + + + N VA +A     ++T Y   G + +A+
Sbjct: 96  RTGTI----LLSGYARAGRVRDARRVFDGMGVRNTVAWNA-----MVTCYVQNGDITLAR 146

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
            LFD +  +++     M++GY  +  +E+AR +F++M E++ + W+ MISGY        
Sbjct: 147 KLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGR 206

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393
           A  +F  M   GM P++  ++SV+SA  HLG     + IH+ + K  F  D+ V  AI++
Sbjct: 207 AWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILN 266

Query: 394 MYAK-CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452
            Y K    L+SA + FE M  RN  +W+++I A +  G   +A   + +   +S+     
Sbjct: 267 GYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTS 326

Query: 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512
              G+    +  G +D+ + +F  +       P    +  M+  + +  ++ EA +L   
Sbjct: 327 MLTGL----ARYGRIDDAKILFDQIHE-----PNVVSWNAMITGYMQNEMVDEAEDLFNR 377

Query: 513 MPFAPNVVIWGSLMAACRVHGEIELA 538
           MPF  N + W  ++A    +G  E A
Sbjct: 378 MPFR-NTISWAGMIAGYARNGRSEQA 402



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 185/387 (47%), Gaps = 48/387 (12%)

Query: 101 ALKVFLKMLNEGLTIDRFSFPPILKAIAR--AEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           A  +F  ML EG+T ++ +   +L A+      G+LE   +H L  K GF  D  V T +
Sbjct: 207 AWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILE--SIHVLVHKTGFERDVVVGTAI 264

Query: 159 VGMYGACGKILDARL-MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD 217
           +  Y     +LD+ +  F+ M+ R+   WS +I    Q G  D+   +++       +P 
Sbjct: 265 LNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQR------DPL 318

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFD 277
           + V S+                                 ++++T  A  G +D AK LFD
Sbjct: 319 KSVPSR---------------------------------TSMLTGLARYGRIDDAKILFD 345

Query: 278 KVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL 337
           ++   N+V   AM++GY +   V++A  +F++M  ++ I W+ MI+GYA N   ++AL  
Sbjct: 346 QIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVS 405

Query: 338 FNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
              +   GM P   ++ S   AC+++  L+  +++H    K     +  V NA+I +Y K
Sbjct: 406 LQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGK 465

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
             S+ S R++F+RM  ++ +S+ S ++A   +     A   FN M      P+ V++  +
Sbjct: 466 YRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMP----SPDVVSWTTI 521

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIP 484
           + AC+ A   +E  EIF SM +E  +P
Sbjct: 522 ISACAQADQGNEAVEIFRSMLHERELP 548



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 193/411 (46%), Gaps = 22/411 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F+++P   +      I   + + R + AL     +  +G+     S      A + 
Sbjct: 371 AEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSN 430

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            E L  G QVH L  K G   + +V   L+ +YG    I   R +FD+M+ +D V ++  
Sbjct: 431 IEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSF 490

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           +    QN LFDE  ++F  M      PD +  + I+SAC++A   +    +   ++    
Sbjct: 491 MSALVQNNLFDEARDVFNNMP----SPDVVSWTTIISACAQADQGNEAVEIFRSMLHERE 546

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLL----KNLVVSTAMVSGYSRAGQVEDARL 305
             +  + + L+ +  N G   + + +    +       LVV+ A+VS Y +     D+  
Sbjct: 547 LPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSA-DSLK 605

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +FD M E+D+  W+ +I+GYA++   +EA++++  M   G+ P++VT + ++ AC+H G+
Sbjct: 606 VFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGL 665

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNA-IIDMYAKCGSLESARE-VFERMRRRNVISWTSMI 423
           +D+  +    +  +     L  + A ++D+  + G ++ A   +++     + + W++++
Sbjct: 666 VDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALL 725

Query: 424 NAFAIHGDA----RNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDE 469
            A  IH +     R A   F      SI+P N   ++ +    S  G+ DE
Sbjct: 726 GACKIHKNVEIGRRAAEKLF------SIEPSNAGNYVMLSNIYSSQGMWDE 770


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/685 (32%), Positives = 373/685 (54%), Gaps = 46/685 (6%)

Query: 30  QTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFI 89
           Q HA+ILK   S    +  +   L+ S+S      +    A  +   IP P     +  I
Sbjct: 36  QAHARILK---SGAQNDGYISAKLIASYS----NYNCFNDADLVLQSIPDPTIYSFSSLI 88

Query: 90  RAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFG 149
            A++ +     ++ VF +M + GL  D    P + K  A       G Q+H +    G  
Sbjct: 89  YALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLD 148

Query: 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
            D FVQ  +  MY  CG++ DAR +FD+MS +D+V  S ++  Y + G  +EV+ +  EM
Sbjct: 149 MDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEM 208

Query: 210 KMSNVE-----------------------------------PDEMVLSKILSACSRAGNL 234
           + S +E                                   PD++ +S +L +   +  L
Sbjct: 209 ESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEML 268

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
           + G  +H ++I   +  D  + S +I MY   G +     LF++  +    V  A ++G 
Sbjct: 269 NMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGL 328

Query: 295 SRAGQVEDARLIFD----QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           SR G V+ A  +F+    Q +E +++ W+++I+G A+N    EAL+LF EMQV G+KP+ 
Sbjct: 329 SRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNH 388

Query: 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410
           VT+ S++ AC ++  L   +  H +  +     ++ V +A+IDMYAKCG +  ++ VF  
Sbjct: 389 VTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNM 448

Query: 411 MRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470
           M  +N++ W S++N F++HG A+  +  F  +    + P+ ++F  +L AC   GL DEG
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508

Query: 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACR 530
            + F  M+ EY I P+ EHY CMV+L GRA  L+EA +L++ MPF P+  +WG+L+ +CR
Sbjct: 509 WKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCR 568

Query: 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERAC 590
           +   ++LAE AA++L  L+P++ G  VLLSNIYA    W +V  +R  M+  G+ K   C
Sbjct: 569 LQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGC 628

Query: 591 SRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREV 650
           S I++ N VY  L  D+SH Q DQI EK++E+  E++ +G+ P++  AL D+E++E+ ++
Sbjct: 629 SWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQM 688

Query: 651 ILWHSEKLALCYGLISSKKDSCIRI 675
           +  HSEKLA+ +GL+++   + +++
Sbjct: 689 LWGHSEKLAVVFGLLNTPDGTPLQV 713


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/644 (33%), Positives = 348/644 (54%), Gaps = 68/644 (10%)

Query: 109 LNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI 168
           L+     +   +P +L +      LL   Q+H      GF     + T L+ +Y    K 
Sbjct: 44  LSSSTYTNYLHYPRLLSSCKHLNPLL---QIHAQIIVSGFKHHHSI-THLINLYSLFHKC 99

Query: 169 LDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228
             AR +FD       + W+ MI  Y ++  ++E L ++  M                   
Sbjct: 100 DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCM------------------- 140

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
                          +    +  D  + + L+ MY+  G +  A+ +FDK+  +++V   
Sbjct: 141 ---------------VEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWN 185

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA---------------------- 326
           AM++G S++     AR +FDQMV++D + W  M++GYA                      
Sbjct: 186 AMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTW 245

Query: 327 --------ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
                   +N H +EA+  F++M++    P+ VT +SV+ A A+L    +    H  I +
Sbjct: 246 NVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ 305

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIF 438
             F  +  V N++IDMYAKCG L+ + ++F  M  ++ +SW +M++ +A+HG    A+  
Sbjct: 306 MGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIAL 365

Query: 439 FNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498
           F+ M++  +  + V+F+ VL AC HAGLV+EGR+IF SM+++Y+I P  EHY CMVDL G
Sbjct: 366 FSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLG 425

Query: 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558
           RA L  E L  ++ MP  P+  +WG+L+ +CR+H  ++L E A   L++L+P +    V+
Sbjct: 426 RAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVV 485

Query: 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEK 618
           LS+IYA+  RW D G+ R  M + G+ K   CS +E+ N+V+ F   D+SH Q + ++  
Sbjct: 486 LSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLL 545

Query: 619 LNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKN 678
            N ++ +++  GYVPD    L ++E+E+K   +  HSE+LA+ + L+++   S I+IVKN
Sbjct: 546 WNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKN 605

Query: 679 LRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           LRVC DCH   K +SK+  R I++RD TRFHH++DG+CSC DYW
Sbjct: 606 LRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 126/528 (23%), Positives = 201/528 (38%), Gaps = 145/528 (27%)

Query: 3   TLSQPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTT 62
           +LS  T    L     +SSC  L  + Q HAQI+     HH   + L+ L          
Sbjct: 43  SLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLY--------- 93

Query: 63  TPSSLYY----ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF 118
              SL++    A S+F   P P   + N  IRA + S +   AL+++  M+ +G      
Sbjct: 94  ---SLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG------ 144

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
                                       G   D F+  GLV MY   G +  AR +FDKM
Sbjct: 145 ----------------------------GLERDVFIGAGLVDMYSKMGDLKRAREVFDKM 176

Query: 179 SYRDIVPWSVMI-------------------------------DGYFQNGLFDEVLNLFE 207
             RD+V W+ MI                                GY  NG F EVL LF+
Sbjct: 177 PKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFD 236

Query: 208 EMKMSNV------------------------------EPDEMVLSKILSACSRAGNLSYG 237
           +MK+ NV                               P+ +    +L A +       G
Sbjct: 237 KMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREG 296

Query: 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRA 297
            A H  II      +  + ++LI MYA CG +D ++ LF+++  K+ V   AM+SGY+  
Sbjct: 297 MAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVH 356

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           G                               H   A+ LF+ MQ   ++ D V+ +SV+
Sbjct: 357 G-------------------------------HGDRAIALFSLMQESQVQIDSVSFVSVL 385

Query: 358 SACAHLGVLDQAQRI-HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRN 415
           SAC H G++++ ++I H   DK     DL     ++D+  + G  +      + M    +
Sbjct: 386 SACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPD 445

Query: 416 VISWTSMINAFAIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACS 462
              W +++ +  +H + +   +  + + K E  +P     +  +YA S
Sbjct: 446 AGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQS 493



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 122/268 (45%), Gaps = 7/268 (2%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  I A   +   K A+  F +M  E    +  +F  +L A A      EGM  H    +
Sbjct: 246 NVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ 305

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
           +GF S+  V   L+ MY  CG++  +  +F++M ++D V W+ M+ GY  +G  D  + L
Sbjct: 306 MGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIAL 365

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN-NVALDAHLQSTLITMYA 264
           F  M+ S V+ D +    +LSAC  AG +  G  +   + D  ++  D    + ++ +  
Sbjct: 366 FSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLG 425

Query: 265 NCGCMDMAKGLFDKVLL--KNLVVSTAMVSGYSRAGQVEDARLIFDQMVE---KDLICWS 319
             G  D   G F KV+    +  V  A++        V+   +  D +V+   ++   + 
Sbjct: 426 RAGLFDETLG-FIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFV 484

Query: 320 AMISGYAENNHPQEALKLFNEMQVCGMK 347
            + S YA++    +A K  ++M   G+K
Sbjct: 485 VLSSIYAQSGRWADAGKARSKMNDLGLK 512


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/609 (35%), Positives = 342/609 (56%), Gaps = 34/609 (5%)

Query: 117 RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG--MYGACGKILDARLM 174
           +F+    L  + R + + E  +VH    KLG   D F  + LV        G +  A  +
Sbjct: 28  KFNEQGWLSLLKRCKSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSI 87

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           F ++       ++ MI G   +   +E L L+ EM    +EPD      +L ACS    L
Sbjct: 88  FRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVAL 147

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
             G  +H  + +  + +D  +Q+ LI+MY                               
Sbjct: 148 KEGVQIHAHVFNAGLEVDVFVQNGLISMYG------------------------------ 177

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM-KPDKVTM 353
            + G +E A ++F+QM EK +  WS++I  +A      E L L  +M   G  + ++  +
Sbjct: 178 -KCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESIL 236

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR 413
           +S +SAC HLG  +  + IH  + +N    ++ V  ++IDMY KCGSLE    VF+ M  
Sbjct: 237 VSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAH 296

Query: 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473
           +N  S+T MI   AIHG  R AL  F+ M +E + P+ V ++GVL ACSHAGLV EG + 
Sbjct: 297 KNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQC 356

Query: 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
           F  M  E+ I P  +HYGCMVDL GRA +L+EA +L+++MP  PN V+W SL++AC+VH 
Sbjct: 357 FNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHH 416

Query: 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
            +E+ E AA  + +L+  + G  ++L+N+YA+ ++W +V  +R  M E+ +++    S +
Sbjct: 417 NLEIGEIAADNIFKLNKHNPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLV 476

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILW 653
           E N  VY+F++ D+S  Q + IY+ + ++  +LK  GY PD+   L+D++++EKR+ +  
Sbjct: 477 EANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKH 536

Query: 654 HSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKD 713
           HS+KLA+ + LI + + S +RI +NLR+C DCH + K +S +Y REI +RD  RFHH+KD
Sbjct: 537 HSQKLAIAFALIQTSEGSPVRISRNLRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKD 596

Query: 714 GVCSCKDYW 722
           G CSCKDYW
Sbjct: 597 GTCSCKDYW 605



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 206/439 (46%), Gaps = 49/439 (11%)

Query: 4   LSQPTKPLTLPTSTA----------ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLL 53
           LS P  PL      A          +  C S+   K+ HA ILKL   +   +S     L
Sbjct: 13  LSLPNSPLQSSELNAKFNEQGWLSLLKRCKSMEEFKKVHAHILKLGLFY---DSFCGSNL 69

Query: 54  LTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGL 113
           + S +L  +   S+ YA SIF QI  P S   N  IR    S   + AL ++++ML  G+
Sbjct: 70  VASCAL--SRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGI 127

Query: 114 TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARL 173
             D F++P +LKA +    L EG+Q+H      G   D FVQ GL+ MYG CG I  A +
Sbjct: 128 EPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGV 187

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAG 232
           +F++M  + +  WS +I  +    ++ E L L  +M +      +E +L   LSAC+  G
Sbjct: 188 VFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLG 247

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
           + + G  +H  ++ N   L+  ++++LI MY  CG ++    +F  +  KN    T M++
Sbjct: 248 SPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIA 307

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
           G +  G+  +A  +F  M+E+                               G+ PD V 
Sbjct: 308 GLAIHGRGREALRVFSDMLEE-------------------------------GLTPDDVV 336

Query: 353 MLSVISACAHLGVLDQA-QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
            + V+SAC+H G++ +  Q  +    ++     ++    ++D+  + G L+ A ++ + M
Sbjct: 337 YVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSM 396

Query: 412 R-RRNVISWTSMINAFAIH 429
             + N + W S+++A  +H
Sbjct: 397 PIKPNDVVWRSLLSACKVH 415


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/553 (37%), Positives = 322/553 (58%), Gaps = 36/553 (6%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230
           AR +F ++   D + ++ +I  +         L+ F  M+ + +  D      +L ACSR
Sbjct: 41  ARYVFSRIPSPDTIAYNTIIRSH-SRFFPSHSLSYFFSMRSNGIPLDNFTFPFVLKACSR 99

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
              L     +H  I+   +  D  +Q+ LI +Y  CG +                     
Sbjct: 100 ---LQINLHLHSLIVKYGLGSDIFVQNALICVYGYCGSL--------------------- 135

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV-CGMKPD 349
                     E A  +FD+M E+D + WS +I+ +  N +  EAL LF +MQ+   + PD
Sbjct: 136 ----------EMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPD 185

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
           +VTMLSVISA +HLG L+  + +  +I +  FG  + +  A+IDM+++CGS++ +  VFE
Sbjct: 186 EVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFE 245

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
           +M  RNV++WT++IN   IHG +  AL  F+ M+   + P+ VTF GVL ACSH GLV E
Sbjct: 246 KMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKE 305

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G +IF S+   Y + P  +HYGCMVD+ GRA LL EA + VE MP  PN +IW +L+ AC
Sbjct: 306 GWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGAC 365

Query: 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589
             H  + LAE    ++ ++    +G LVLLSN+Y    RW +   +R  M+E+ I KE  
Sbjct: 366 VNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPG 425

Query: 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKRE 649
           CS I ++  ++EF++ D SH Q++ I + L+ +I +L+  GY+    + L D+E+EE+  
Sbjct: 426 CSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREH 485

Query: 650 VILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFH 709
            + +HSEKLA+ + ++S K    IRI+KNLR+C DCH+F+K +S  + R+I+IRDR RFH
Sbjct: 486 SLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFH 545

Query: 710 HYKDGVCSCKDYW 722
           H++ G+CSC DYW
Sbjct: 546 HFEKGLCSCHDYW 558



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 131/411 (31%), Positives = 210/411 (51%), Gaps = 45/411 (10%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV 84
           + ++ + H  I+K   S    + L L+ LL   S     P SL YA  +FS+IP+P +  
Sbjct: 1   MNNVYRLHCYIIK---SSKQNDPLSLRTLL--LSCVAAAPESLSYARYVFSRIPSPDTIA 55

Query: 85  SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
            N  IR+ S    P H+L  F  M + G+ +D F+FP +LKA +R   L   + +H L  
Sbjct: 56  YNTIIRSHS-RFFPSHSLSYFFSMRSNGIPLDNFTFPFVLKACSR---LQINLHLHSLIV 111

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           K G GSD FVQ  L+ +YG CG +  A  +FD+MS RD V WS +I  +  NG   E L+
Sbjct: 112 KYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALD 171

Query: 205 LFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
           LFE+M++ + V PDE+ +  ++SA S  G+L  G  V  FI      +   L + LI M+
Sbjct: 172 LFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMF 231

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
           + CG +D +  +F+K+ ++N++  TA+++G    G+                        
Sbjct: 232 SRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGR------------------------ 267

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
                    EAL +F+ M+  G++PD VT   V+ AC+H G++ +   I   I K  +G 
Sbjct: 268 -------SMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRK-VYGM 319

Query: 384 DLRVNN--AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGD 431
           D  +++   ++D+  + G L  A +  ERM  + N I W +++ A   H +
Sbjct: 320 DPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNN 370


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/598 (38%), Positives = 337/598 (56%), Gaps = 45/598 (7%)

Query: 138 QVHGLGTKLGFG--SDPFVQTGLVGMYGACGK-----ILDARLMFDKMSYRDIVPW---- 186
           Q+H +  K G G  + P   T L+ +    G      +  AR +FD++ +   V W    
Sbjct: 46  QLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVIWYNTL 105

Query: 187 -SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
                 G    G  +E   +F  M    V PD      +L AC+ A     G   H   +
Sbjct: 106 LRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAV 165

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
               A   ++  TLI MYA CG                                V  AR+
Sbjct: 166 KAGAAEHEYVAPTLINMYAECG-------------------------------DVRAARV 194

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
           +FD+M  + ++ ++AMI+    ++ P EAL LF EMQ  G+KP  VT++SV+SACA LG 
Sbjct: 195 MFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGA 254

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425
           L+  + IH YI K      ++VN A+IDMYAKCGSLE A  VF+ M  R+  +W+ M+ A
Sbjct: 255 LELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVA 314

Query: 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485
           +A HG  R A+  F +MK + + P+ VTF+GVLYACSH+G+V EG + F SM  EY I  
Sbjct: 315 YANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVS 373

Query: 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545
             +HYGC+ DL  R+  L  A + ++ +P  P  ++W +L++AC  HG++++ +   +++
Sbjct: 374 GIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERI 433

Query: 546 LQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTA 605
           L+LD  H G  V+ SN+ A   RW+++  +RK M E+G++K   CS IE++N V+EF   
Sbjct: 434 LELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAG 493

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDI-HSALVDLEDEEKREVILWHSEKLALCYGL 664
           D SH  + +    ++EVI +LK  GYVP+  H   V++ +EEK   + +HSEKLA+ +GL
Sbjct: 494 DGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGL 553

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +++   + +RIVKNLRVC DCH+  KLVS V+ R I++RD  RFHH++DGVCSC DYW
Sbjct: 554 LNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 210/454 (46%), Gaps = 38/454 (8%)

Query: 22  CSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPP 81
           C+SL  + Q HA  +K      +  + + +LL          P+ L YA  +F +IP P 
Sbjct: 38  CTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPG 97

Query: 82  SRV-SNKFIRAISWSHRPKHALK----VFLKMLNEGLTIDRFSFPPILKAIARAEGLLEG 136
             +  N  +R  +         +    VF++M+ EG+  D ++F  +LKA A A    EG
Sbjct: 98  DVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEG 157

Query: 137 MQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196
            Q HG+  K G     +V   L+ MY  CG +  AR+MFD+M    +V ++ MI    ++
Sbjct: 158 RQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRS 217

Query: 197 GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
            L  E L LF EM+   ++P  + L  +LSAC+  G L  G  +H++I    +     + 
Sbjct: 218 SLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVN 277

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           + LI MYA CG +                               EDA  +F  M  +D  
Sbjct: 278 TALIDMYAKCGSL-------------------------------EDAIGVFQDMESRDKQ 306

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376
            WS M+  YA + + +EA+ +F EM+  GMKPD VT L V+ AC+H G++ +  +    +
Sbjct: 307 AWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM 366

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNA 435
            +      ++    + D+ A+ G LE A +  + +  +   I W ++++A A HGD    
Sbjct: 367 REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMG 426

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
              F ++  E  D +G  ++     C++ G  +E
Sbjct: 427 KRVFERIL-ELDDSHGGDYVIFSNLCANTGRWEE 459


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/566 (38%), Positives = 328/566 (57%), Gaps = 26/566 (4%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F  +P P     N  +   +   R + +L+ F+KM  E   ++ +SF   L A A 
Sbjct: 100 AARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAG 159

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L  G QVH L +K  + +D ++ + L+ MY  CG +  A  +F  M  R++V W+ +
Sbjct: 160 LMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSL 219

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN- 248
           I  Y QNG   E L +F  M  S +EPDE+ L+ ++SAC+    L  G  +H  ++  N 
Sbjct: 220 ITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNK 279

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D  L + L+ MYA C  ++ A+ +FD++ ++N+V  T+MVSGY+RA  V+ AR +F 
Sbjct: 280 FRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFS 339

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
           +M +++++ W+A+I+GY +N   +EAL+LF  ++   + P   T                
Sbjct: 340 KMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTF--------------- 384

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
                     N    D+ V N++IDMY KCGS+E    VFE+M+ R+ +SW ++I  +A 
Sbjct: 385 ---------GNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQ 435

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           +G    AL  F KM      P+ VT IGVL ACSHAGLV+EGR  F SM  E+ + P  +
Sbjct: 436 NGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKD 494

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HY CMVDL GRA  L EA  L+E MP  P+ V+WGSL+AAC+VHG IE+ + AA++LL++
Sbjct: 495 HYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEI 554

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           DP + G  VLLSN+YA+  RW DV  +RK M+++G+ K+  CS IE+ + V+ FL  D+S
Sbjct: 555 DPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKS 614

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPD 634
           H    QIY  L  +  ++K  GY+PD
Sbjct: 615 HPHRKQIYSVLKMLTEQMKRVGYIPD 640



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 179/332 (53%), Gaps = 1/332 (0%)

Query: 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275
           P+    +K+L +C R+ +      VH  I+    +++  +Q+ LI +Y  C C+D A+ L
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           FD++  +N     +++S  +++G +++A  +F  M E D   W++M+SG+A+++  +E+L
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           + F +M       ++ +  S +SACA L  L+   ++H  + K+ +  D+ + +A+IDMY
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
           +KCGS+  A EVF  M  RN+++W S+I  +  +G A  AL  F +M D  ++P+ VT  
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252

Query: 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPF 515
            V+ AC+    + EG +I A +               +VD++ + + + EA  + + M  
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312

Query: 516 APNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
             NVV   S+++       ++ A F   ++ Q
Sbjct: 313 R-NVVSETSMVSGYARAASVKAARFMFSKMTQ 343



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/495 (25%), Positives = 215/495 (43%), Gaps = 87/495 (17%)

Query: 108 MLNEGLTIDRF-----SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162
           M   GL  D +      F  +L +  R+        VH       F  + F+Q  L+ +Y
Sbjct: 1   MAKHGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVY 60

Query: 163 GACGKILDARLMFDKMSYR-------------------------------DIVPWSVMID 191
           G C  + DAR +FD+M  R                               D   W+ M+ 
Sbjct: 61  GKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVS 120

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           G+ Q+  F+E L  F +M   +   +E      LSAC+   +L+ G  VH  +  +  + 
Sbjct: 121 GFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYST 180

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
           D ++ S LI MY+ CG +  A+ +F  ++ +NLV   ++++ Y                 
Sbjct: 181 DVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYE---------------- 224

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
                          +N    EAL++F  M   G++PD+VT+ SV+SACA L  L +  +
Sbjct: 225 ---------------QNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQ 269

Query: 372 IHLYIDK-NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG 430
           IH  + K N F  DL + NA++DMYAKC  +  AR VF+RM  RNV+S TSM++ +A   
Sbjct: 270 IHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAA 329

Query: 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490
             + A   F+KM   ++    V++  ++   +  G  +E   +F  +  E +I P +  +
Sbjct: 330 SVKAARFMFSKMTQRNV----VSWNALIAGYTQNGENEEALRLFRLLKRE-SIWPTHYTF 384

Query: 491 G-----------CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA--ACRVHGEIEL 537
           G            ++D++ +   + +   + E M    + V W +++   A   +G   L
Sbjct: 385 GNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMK-ERDCVSWNAIIVGYAQNGYGAEAL 443

Query: 538 AEFAAKQLLQLDPDH 552
             F    +    PDH
Sbjct: 444 QIFRKMLVCGEKPDH 458


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 241/738 (32%), Positives = 374/738 (50%), Gaps = 101/738 (13%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           AL +F ++    + + N  I+  +       A++ + +M+  G+  D F++P ++K++A 
Sbjct: 83  ALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAG 142

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L EG ++H +  KLGF SD +V   L+ +Y   G   DA  +F++M  RDIV W+ M
Sbjct: 143 ISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSM 202

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDE------------------------------- 218
           I GY   G     L LF+EM     +PD                                
Sbjct: 203 ISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRI 262

Query: 219 -----MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
                MV++ IL   S+ G +SY E +   +I  N+       + +I  YA  G +  A 
Sbjct: 263 ETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVA----WNVMIGCYARNGRVTDAF 318

Query: 274 GLFDKV------------------------------------LLKNLVVSTAMVSGYSRA 297
             F K+                                     L ++V+ TA++  Y   
Sbjct: 319 LCFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGEC 378

Query: 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357
           GQ++ A +IFD+M EK++I W+++I+ Y +N     AL+LF E+    + PD  T+ S++
Sbjct: 379 GQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASIL 438

Query: 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVI 417
            A A    L + + IH YI K+ +  +  + N+++ MYA CG LE AR+ F  +  ++V+
Sbjct: 439 PAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVV 498

Query: 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477
           SW S+I A+A+HG  R ++  F++M    ++PN  TF  +L ACS +G+VDEG E F SM
Sbjct: 499 SWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESM 558

Query: 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537
             EY I P  EHYGCM+DL GR      A   +E MPF P   IWGSL+ A R H +I +
Sbjct: 559 KREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITI 618

Query: 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNN 597
           AEFAA+Q+ +++ D+ G  VLL N+YA+  RW+DV  ++  M+ +GI +  + S +E   
Sbjct: 619 AEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKG 678

Query: 598 EVYEFLTADRSHKQTDQIYEKLNEV-------------ISELKPAGYVPDIHSALVDLED 644
           + + F   DRSH  T++IYE L+ V             +S L+P          LV    
Sbjct: 679 KSHVFTNGDRSHVATNKIYEVLDVVSRMVGEEDIYVHCVSRLRP--------ETLVKSRS 730

Query: 645 EEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRD 704
              R     HS +LA C+GLIS++    + +  N R+C  CH F++  S++  REIV+ D
Sbjct: 731 NSPRR----HSVRLATCFGLISTETGRRVTVRNNTRICRKCHEFLEKASRLTRREIVVGD 786

Query: 705 RTRFHHYKDGVCSCKDYW 722
              FHH+ +G CSC +YW
Sbjct: 787 SKIFHHFSNGRCSCGNYW 804



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 194/400 (48%), Gaps = 44/400 (11%)

Query: 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
           +DP +   L G +     + DA  +FD+M+  D   W+VMI G+   GL+ E +  +  M
Sbjct: 63  NDPALTRALRG-FADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRM 121

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
             + V+ D      ++ + +   +L  G+ +H  +I      D ++ ++LI++Y   GC 
Sbjct: 122 VFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCA 181

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
             A+ +F+++  +++V   +M+SGY   G                         G++   
Sbjct: 182 WDAEKVFEEMPERDIVSWNSMISGYLALGD------------------------GFS--- 214

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF-GGDLRVN 388
               +L LF EM  CG KPD+ + +S + AC+H+      + IH +  ++    GD+ V 
Sbjct: 215 ----SLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVM 270

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES-I 447
            +I+DMY+K G +  A  +F  M +RN+++W  MI  +A +G   +A + F KM +++ +
Sbjct: 271 TSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGL 330

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            P+ +T I +L A +    + EGR I         +P        ++D++G    L+ A 
Sbjct: 331 QPDVITSINLLPASA----ILEGRTIHGYAMRRGFLPHMVLETA-LIDMYGECGQLKSAE 385

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
            + + M    NV+ W S++AA   +G+     ++A +L Q
Sbjct: 386 VIFDRMA-EKNVISWNSIIAAYVQNGK----NYSALELFQ 420



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 202/429 (47%), Gaps = 47/429 (10%)

Query: 9   KPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLK--LLLTSFSLPTTTPSS 66
           KP    T +A+ +CS +   K       K  H H  ++ +     +++TS     +    
Sbjct: 228 KPDRFSTMSALGACSHVYSPKMG-----KEIHCHAVRSRIETGDVMVMTSILDMYSKYGE 282

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPILK 125
           + YA  IF+ +        N  I   + + R   A   F KM  + GL  D  +   +L 
Sbjct: 283 VSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLP 342

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
           A A    +LEG  +HG   + GF     ++T L+ MYG CG++  A ++FD+M+ ++++ 
Sbjct: 343 ASA----ILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVIS 398

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ +I  Y QNG     L LF+E+  S++ PD   ++ IL A + + +LS G  +H +I+
Sbjct: 399 WNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIV 458

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
            +    +  + ++L+ MYA CG ++ A+  F+ +LLK                       
Sbjct: 459 KSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLK----------------------- 495

Query: 306 IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365
                   D++ W+++I  YA +   + ++ LF+EM    + P+K T  S+++AC+  G+
Sbjct: 496 --------DVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGM 547

Query: 366 LDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMRRRNVIS-WTSM 422
           +D+    +    K  +G D  + +   ++D+  + G+  +A+   E M        W S+
Sbjct: 548 VDEGWE-YFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSL 606

Query: 423 INAFAIHGD 431
           +NA   H D
Sbjct: 607 LNASRNHKD 615



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 135/280 (48%), Gaps = 14/280 (5%)

Query: 288 TAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMK 347
           T  + G++ +  +EDA  +FD+M + D   W+ MI G+       EA++ ++ M   G+K
Sbjct: 68  TRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVK 127

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
            D  T   VI + A +  L++ ++IH  + K  F  D+ V N++I +Y K G    A +V
Sbjct: 128 ADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKV 187

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           FE M  R+++SW SMI+ +   GD  ++L+ F +M      P+  + +  L ACSH    
Sbjct: 188 FEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSP 247

Query: 468 DEGREIFASMTNEYNIPPKYEHYGCMV-----DLFGRANLLREALELVETMPFAPNVVIW 522
             G+EI       + +  + E    MV     D++ +   +  A  +   M    N+V W
Sbjct: 248 KMGKEIHC-----HAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGM-IQRNIVAW 301

Query: 523 GSLMAACRVHGEIELAEFAAKQLLQ---LDPDHDGALVLL 559
             ++     +G +  A    +++ +   L PD   ++ LL
Sbjct: 302 NVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLL 341


>gi|297733830|emb|CBI15077.3| unnamed protein product [Vitis vinifera]
          Length = 804

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/626 (37%), Positives = 342/626 (54%), Gaps = 68/626 (10%)

Query: 101 ALKVFLKML-NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159
           AL+ F  ML ++ +  +      IL A A    L +G  +H    K        + T L+
Sbjct: 243 ALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALI 302

Query: 160 GMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219
            MY  CG+I  AR +FD +  RD++ W+ MI G   +GL  E L  F EM     +PD++
Sbjct: 303 DMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDI 362

Query: 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279
            L  +L+ CS +G L   E VH  ++                           K  F+  
Sbjct: 363 TLLGVLNGCSHSG-LVEEEIVHGMVV---------------------------KSGFES- 393

Query: 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFN 339
              NL V  ++++  S   ++EDAR +F+QM E+D+  W++++ GYA++     A   F 
Sbjct: 394 ---NLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRASLTFF 450

Query: 340 EMQVCG--MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397
              +C   + P++  ++ V+SACAHLG LDQ   IHLYIDK        ++ A+IDMYAK
Sbjct: 451 CNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAK 510

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           CG ++ A  VF  + +R+V+S+TSMI+  + HG  ++AL                     
Sbjct: 511 CGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDAL--------------------- 549

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
                       G  I A+M + + I PK EHYGC +DL GRA  L  ALE+V+TMP  P
Sbjct: 550 -----------RGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEP 598

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQL-DPDHDGALVLLSNIYAKDKRWQDVGELR 576
           ++VIW +L++A R+H  + L E     + QL   DH+G  VLLSN+YA   RW+ V E+R
Sbjct: 599 DIVIWRALLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMR 658

Query: 577 KSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636
           K M +R       CS IE+N  V+EF  AD+ H Q  +I  KLNE++  L   GY  +  
Sbjct: 659 KLMVDRRSESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTM 718

Query: 637 SALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
               DL +EEK + + WHSEKLA+ +GL+S++  + IRIVKNLR CEDCH+ +K +S+VY
Sbjct: 719 QVSFDLNEEEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVY 778

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
            REIV+RDR+RFH + +G CSCKD+W
Sbjct: 779 GREIVVRDRSRFHTFIEGDCSCKDFW 804



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 219/434 (50%), Gaps = 45/434 (10%)

Query: 118 FSFPP---ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
           FS P     ++ + +   L +  Q+H      G   +  +   L+  Y  C  +  AR++
Sbjct: 50  FSLPSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIV 109

Query: 175 FDKM-SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP---DEMVLSKILSACSR 230
           FD+  S    + W++MI  Y +     E L LF +M +++  P   D+   + + +ACSR
Sbjct: 110 FDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQM-LAHGRPTSADKYTFTFVFTACSR 168

Query: 231 AGNL-SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
              L  YGE VH  ++ +    D  + ++L+ MY+    M  AK +FD++  ++++  T+
Sbjct: 169 HPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTS 228

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG--MK 347
           +V GY+  G+  +                              EAL+ FN+M +C   +K
Sbjct: 229 VVKGYAMRGEFYN------------------------------EALQCFNDM-LCHDEVK 257

Query: 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407
           P++  ++S++SACAHLG LDQ + IH+YIDKN       ++ A+IDMYAKCG ++ AR V
Sbjct: 258 PNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRV 317

Query: 408 FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467
           F+ + +R++++WTSMI+  ++HG     L  F++M  E   P+ +T +GVL  CSH+GLV
Sbjct: 318 FDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLV 377

Query: 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA 527
           +E  EI   M  +            ++++      + +A ++   M    +V  W SL+ 
Sbjct: 378 EE--EIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMS-ERDVFSWTSLLG 434

Query: 528 ACRVHGEIELAEFA 541
               HGE++ A   
Sbjct: 435 GYAKHGEMDRASLT 448


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/515 (41%), Positives = 306/515 (59%), Gaps = 33/515 (6%)

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           ++  +  P+   L+  L AC+       G  +H   +   +A  A++Q+ L+ +YA C  
Sbjct: 117 LRAGSPRPNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCE- 175

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV-EKDLICWSAMISGYAE 327
                                         QV  AR +FD M  +K+L+ WSAM+SGY+ 
Sbjct: 176 ------------------------------QVALARTVFDGMAGDKNLVAWSAMVSGYSR 205

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
                EAL LF EMQ  G++PD+VTM+SVISACA  G LD  + +H YID+     DL +
Sbjct: 206 VGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLEL 265

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
           + A+IDMYAKCG +E AR VF+ M  ++  +W++MI  FAIHG   +AL  F++M +  +
Sbjct: 266 STALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKV 325

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            PN VTFIGVL AC+H+GLV++GR  ++ M N   I P  E+YGCMVDL  R+ LL +A 
Sbjct: 326 RPNNVTFIGVLSACAHSGLVEDGRRYWSIMQN-LGIKPSMENYGCMVDLLCRSGLLDDAY 384

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
             V  MP +PN VIW +L+ AC+    I++AE A K+LL+L+P +    VLLSN+YA + 
Sbjct: 385 SFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLSNLYASNS 444

Query: 568 RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627
           +W  V  LR+ MK + +      S IE+N  ++EF+ +D SH +  +I   L E+   ++
Sbjct: 445 QWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLREMADRVR 504

Query: 628 PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHN 687
            AG+ P   + L D+ +EEK   +  HSE+LA+ YGL+ ++    IR+VKNLR C DCH 
Sbjct: 505 RAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLRFCLDCHE 564

Query: 688 FIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             K++SK Y REIV+RDR RFH +  G CSCKD+W
Sbjct: 565 VAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 123/413 (29%), Positives = 203/413 (49%), Gaps = 44/413 (10%)

Query: 4   LSQPTKPLTLPTS-------TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTS 56
           L +P +  TLP         + +  C  L  ++  HA + +L     +    L KLL + 
Sbjct: 3   LLKPKEAATLPREALEAHIVSLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKLLASC 62

Query: 57  FSLPTTTPSSLYYAL---SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGL 113
            S P    +    +    ++F QIP P +   N  IRA+  +     AL V+ +ML  G 
Sbjct: 63  VSAPAPAAAQAAASSYARNLFDQIPDPTAFCYNSLIRALPAAGSAP-ALAVYRRMLRAGS 121

Query: 114 T-IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR 172
              + F+    LKA A      EG Q+H    + G  +  +VQTGL+ +Y  C ++  AR
Sbjct: 122 PRPNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALAR 181

Query: 173 LMFDKMSY-RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
            +FD M+  +++V WS M+ GY + G+ +E L LF EM+   VEPDE+ +  ++SAC++A
Sbjct: 182 TVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKA 241

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
           G L  G+ VH +I    + +D  L + LI MYA CG ++ A+G+FD ++ K+    +AM+
Sbjct: 242 GALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMI 301

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
            G++  G VEDA  +F +M+E                      LK+         +P+ V
Sbjct: 302 VGFAIHGLVEDALGLFSRMLE----------------------LKV---------RPNNV 330

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
           T + V+SACAH G+++  +R    +        +     ++D+  + G L+ A
Sbjct: 331 TFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDA 383



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 157/314 (50%), Gaps = 20/314 (6%)

Query: 304 RLIFDQMVEKDLICWSAMISGY-AENNHPQEALKLFNEMQVCGM-KPDKVTMLSVISACA 361
           R +FDQ+ +    C++++I    A  + P  AL ++  M   G  +P+  T+   + ACA
Sbjct: 80  RNLFDQIPDPTAFCYNSLIRALPAAGSAP--ALAVYRRMLRAGSPRPNSFTLAFALKACA 137

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWT 420
            +    + +++H    +        V   ++++YAKC  +  AR VF+ M   +N+++W+
Sbjct: 138 AVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWS 197

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +M++ ++  G    AL  F +M+   ++P+ VT + V+ AC+ AG +D G+ + A + + 
Sbjct: 198 AMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYI-DR 256

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE--LA 538
             I    E    ++D++ +  L+  A  + + M    +   W +++    +HG +E  L 
Sbjct: 257 KGITVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIHGLVEDALG 315

Query: 539 EFAAKQLLQLDPDHDGALVLLSNI----YAKDKR--W---QDVGELRKSMKERGILKERA 589
            F+    L++ P++   + +LS        +D R  W   Q++G ++ SM+  G + +  
Sbjct: 316 LFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLG-IKPSMENYGCMVDLL 374

Query: 590 CSRIEMNNEVYEFL 603
           C R  + ++ Y F+
Sbjct: 375 C-RSGLLDDAYSFV 387


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/588 (36%), Positives = 338/588 (57%), Gaps = 34/588 (5%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGAC--GKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           Q H    K G   D F  + LV        G +  A  +F +M       ++ M+ G+ +
Sbjct: 6   QSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVK 65

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           +   +E L  ++EM    V+PD      +L AC+R   +  G  VH  I+   +  D  +
Sbjct: 66  DMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFV 125

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
           Q++LI+MY  C                               G++     +F+QM E+ +
Sbjct: 126 QNSLISMYGKC-------------------------------GEIGVCCAVFEQMNERSV 154

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGM-KPDKVTMLSVISACAHLGVLDQAQRIHL 374
             WSA+I+ +A      + L+L  +M   G  + ++  ++SV+SAC HLG LD  + +H 
Sbjct: 155 ASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHG 214

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
           ++ +N  G ++ V  ++I+MY KCG L     +F++M ++N +S++ MI+  A+HG  R 
Sbjct: 215 FLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGRE 274

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494
            L  F +M ++ ++P+ + ++GVL ACSHAGLV EG + F  M  E+ I P  +HYGCMV
Sbjct: 275 GLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMV 334

Query: 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554
           DL GRA  + EALEL+++MP  PN V+W SL++A +VH  ++  E AAKQL +LD     
Sbjct: 335 DLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKAS 394

Query: 555 ALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQ 614
             V+LSN+YA+ +RW+DV   R +M  +G+ +    S +E+  +++ F++ D  H Q++ 
Sbjct: 395 DYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSES 454

Query: 615 IYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIR 674
           +YE L ++  +LK  GY PD    L D+++EEK++ +  HS+KLA+ Y LI + + S +R
Sbjct: 455 VYEMLYQMEWQLKFEGYXPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVR 514

Query: 675 IVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           IV+NLR+C DCH + KL+S ++ REI +RDR RFHH+KDG CSC+DYW
Sbjct: 515 IVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 562



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/413 (28%), Positives = 201/413 (48%), Gaps = 45/413 (10%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV 84
           +   KQ+HA+ILK        +S     L+ + +L  +   S+ YA SIF Q+  P S  
Sbjct: 1   MEEFKQSHARILKXGLF---XDSFCASNLVATCAL--SDWGSMDYACSIFRQMDEPGSFZ 55

Query: 85  SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
            N  +R        + AL  + +M   G+  D F++P +LKA AR   + EGMQVH    
Sbjct: 56  FNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHIL 115

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           KLG  +D FVQ  L+ MYG CG+I     +F++M+ R +  WS +I  +   G++ + L 
Sbjct: 116 KLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLR 175

Query: 205 LFEEMKMSNV-EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
           L  +M        +E +L  +LSAC+  G L  G +VH F++ N   L+  ++++LI MY
Sbjct: 176 LLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMY 235

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
             CG +     LF K+  KN +  + M+SG +  G                         
Sbjct: 236 LKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHG------------------------- 270

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA----QRIHLYIDKN 379
                 + +E L++F EM   G++PD +  + V++AC+H G++ +      R+ L   ++
Sbjct: 271 ------YGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKL---EH 321

Query: 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGD 431
                ++    ++D+  + G ++ A E+ + M    N + W S+++A  +H +
Sbjct: 322 GIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNN 374


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/607 (35%), Positives = 349/607 (57%), Gaps = 34/607 (5%)

Query: 119 SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM 178
           ++  IL++   +  +  G Q+H      G G D  + T LV +Y +CG +  AR +FD+M
Sbjct: 70  NYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEM 129

Query: 179 SYR-DIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSY 236
             + ++  W+V+I  Y ++G  +  + L+  M    +++PD      +L AC+   +LS 
Sbjct: 130 PNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSA 189

Query: 237 GEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSR 296
           G  VH+ ++  N A D                               + V T ++  Y++
Sbjct: 190 GREVHDRVMRTNWATD-------------------------------VFVCTGLIDMYAK 218

Query: 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356
            G +++A  +F+    +D   W++MI+   +N  P EAL L   M   G+ P   T++S 
Sbjct: 219 CGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNMAAEGIAPTIATLVSA 278

Query: 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
           ISA A    L + + +H Y  +  FG   ++  +++DMYAK G +  A  +FE++  R +
Sbjct: 279 ISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHREL 338

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFA 475
           ISW +MI  F +HG A +A   F++M+ E+ + P+ +TF+GVL AC+H G+V E +E+F 
Sbjct: 339 ISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAKEVFD 398

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
            M   Y+I P  +HY C+VD+ G +   +EA ++++ M   P+  IWG+L+  C++H  +
Sbjct: 399 LMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNV 458

Query: 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEM 595
           ELAE A ++L++L+P+  G  VLLSNIYA+  +W++   +RK M  RG+ K  ACS IE+
Sbjct: 459 ELAELALQKLIELEPEDAGNYVLLSNIYAESGKWEEAARVRKLMTNRGLKKIIACSWIEL 518

Query: 596 NNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHS 655
             + + FL  D SH ++D IYE+L  +   +   GYVPD      ++ED+EKR ++  HS
Sbjct: 519 KGKFHGFLVGDASHPRSDDIYEELERLEGLISQTGYVPDTTPVFHNVEDDEKRNMVWGHS 578

Query: 656 EKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGV 715
           E+LA+ +GLIS+   + + + KNLRVCEDCH  IKL+S++  REI+IRD  R+HH+ +G 
Sbjct: 579 ERLAIAFGLISTPPRTKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGE 638

Query: 716 CSCKDYW 722
           CSCKD+W
Sbjct: 639 CSCKDHW 645



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 187/416 (44%), Gaps = 37/416 (8%)

Query: 70  ALSIFSQIPAPPSR-VSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAI 127
           A  +F ++P   +  + N  IRA +     + A++++  ML  G +  D F++PP+LKA 
Sbjct: 122 ARRVFDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKAC 181

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
           A    L  G +VH    +  + +D FV TGL+ MY  CG + +A  +F+  + RD   W+
Sbjct: 182 AALLDLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWN 241

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
            MI    QNG   E L L   M    + P    L   +SA + A  L  G  +H +    
Sbjct: 242 SMIAACGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRR 301

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
                  L+++L+ MYA  G + +A  LF+++L + L+   AM+ G+   G  + A  +F
Sbjct: 302 GFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELF 361

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
            +M                            +E QV    PD +T + V+SAC H G++ 
Sbjct: 362 SRM---------------------------RSEAQV---MPDHITFVGVLSACNHGGMVQ 391

Query: 368 QAQRI-HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINA 425
           +A+ +  L +   +    ++    ++D+    G  + A +V + M  + +   W +++N 
Sbjct: 392 EAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNG 451

Query: 426 FAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
             IH +   A +   K+ + E  D      +  +YA   +G  +E   +   MTN 
Sbjct: 452 CKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYA--ESGKWEEAARVRKLMTNR 505


>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Brachypodium distachyon]
          Length = 652

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/477 (43%), Positives = 316/477 (66%), Gaps = 4/477 (0%)

Query: 250 ALDAH--LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
             D H  ++++LI  Y  CG +  A+ +FD++++K+++  T++V  YSR+  +  A  +F
Sbjct: 176 GFDKHRFVENSLIGAYIACGDVGAARKVFDEMVVKDVICWTSIVVAYSRSRDMGSAEEVF 235

Query: 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367
            Q   KD++ W+AM++GYA+N  P +AL++F+ M   G+  D+V++   ISACA LG + 
Sbjct: 236 GQCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVK 295

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           +A  +    + N FG ++ V + ++DMYAKCG ++ A +VF+ M+ +NV +++SM+   A
Sbjct: 296 RAAWVQEIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLA 355

Query: 428 IHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
            HG AR A+  F  M +   + PN VTFIGVL ACSHAG+V +GR  FA M ++Y I P 
Sbjct: 356 SHGRAREAIALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPS 415

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            +HY CMVDL GRA L+ EAL+LV +M   P+  +WG+L+ ACR+HG+ E+A+ AA+ L 
Sbjct: 416 ADHYTCMVDLLGRAGLVDEALDLVRSMTVEPHGGVWGALLGACRIHGKTEVAKVAAEHLF 475

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE-MNNEVYEFLTA 605
           +L+P+  G  VLLSN  A   +W +V ++RK M+ R + K  A S  E  +  V++F   
Sbjct: 476 KLEPEGIGNYVLLSNTLAAAGKWDEVSKVRKVMRSRRLKKVPAVSWFEGRDGLVHQFFAG 535

Query: 606 DRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLI 665
           D SH +T +I + L E++++LK AGYVP + S + D+ +EEK  +++ HSEKLAL +GL+
Sbjct: 536 DNSHPRTREIKKALLELVAKLKHAGYVPILSSIVYDVSNEEKERLLMGHSEKLALLFGLL 595

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +      IRIVKNLR+C+DCH FI+LVS+    EI++RD  RFHH+KDG CSC  +W
Sbjct: 596 TLGSRCTIRIVKNLRICDDCHLFIRLVSRFEPVEIIVRDNMRFHHFKDGECSCGGFW 652



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 121/502 (24%), Positives = 211/502 (42%), Gaps = 75/502 (14%)

Query: 17  TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ 76
            A+ S  SL H++  HA +++L     S    +L  LL   +      + L YALS+F+ 
Sbjct: 42  AAVDSSPSLRHLRHLHALLIRLPLPPRSL-PFILSRLLRRLAALPPPHAPLPYALSVFAA 100

Query: 77  IPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG----LTIDRFSFPPILKAIARAEG 132
           +  P   ++   +R    +  P     +F ++L       L    F+F P+ K+ A A  
Sbjct: 101 LSPPDPFLAAALLRFALLTQPPLSPFHLFSRILRTARGGELPFLPFAFSPLAKSAAAARS 160

Query: 133 LLEGMQVHGLGTKLG-FGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI-------- 183
           L      H +   +G F    FV+  L+G Y ACG +  AR +FD+M  +D+        
Sbjct: 161 LPAAQAAHAVSFLVGGFDKHRFVENSLIGAYIACGDVGAARKVFDEMVVKDVICWTSIVV 220

Query: 184 -----------------------VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220
                                  V W+ M+ GY QN +  + L +F+ M    +  DE+ 
Sbjct: 221 AYSRSRDMGSAEEVFGQCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVS 280

Query: 221 LSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280
           L+  +SAC++ G +     V E    N   ++  + S L+ MYA CG +D A  +FD + 
Sbjct: 281 LTGAISACAQLGAVKRAAWVQEIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQ 340

Query: 281 LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNE 340
            KN+   ++MV G +  G+  +A  +F  MV +                           
Sbjct: 341 EKNVYTYSSMVVGLASHGRAREAIALFKDMVRR--------------------------- 373

Query: 341 MQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKC 398
                + P+ VT + V++AC+H G++    R +    K+ +G     ++   ++D+  + 
Sbjct: 374 ---ADVAPNHVTFIGVLTACSHAGMVTDG-RYYFAQMKDKYGILPSADHYTCMVDLLGRA 429

Query: 399 GSLESAREVFERMR-RRNVISWTSMINAFAIHGD---ARNALIFFNKMKDESIDPNGVTF 454
           G ++ A ++   M    +   W +++ A  IHG    A+ A     K++ E I  N V  
Sbjct: 430 GLVDEALDLVRSMTVEPHGGVWGALLGACRIHGKTEVAKVAAEHLFKLEPEGIG-NYVLL 488

Query: 455 IGVLYACSHAGLVDEGREIFAS 476
              L A      V + R++  S
Sbjct: 489 SNTLAAAGKWDEVSKVRKVMRS 510


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/611 (36%), Positives = 334/611 (54%), Gaps = 34/611 (5%)

Query: 106 LKMLNEG-LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFV-QTGLVGMYG 163
           L ++  G L  D   +  +LK   R   + +G  VH       F  +  V Q  +V MY 
Sbjct: 75  LDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYA 134

Query: 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSK 223
            CG + DAR MFD+M  +D+V W+ +I G+ QN    + L LF +M     +P+   LS 
Sbjct: 135 KCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSS 194

Query: 224 ILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           +L A      L  G  +H F +        ++ S L+ MYA                   
Sbjct: 195 LLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYA------------------- 235

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
                       R G ++ A+L FD M  K  + W+A+ISG+A     + AL L  +MQ 
Sbjct: 236 ------------RCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQR 283

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
              +P   T  SV+SACA +G L+Q + +H ++ K+       + N ++DMYAK GS++ 
Sbjct: 284 KNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDD 343

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
           A+ VF+R+ + +V+SW +M+   A HG  +  L  F +M    I+PN ++F+ VL ACSH
Sbjct: 344 AKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSH 403

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG 523
           +GL+DEG   F  M  +Y + P   HY   VDL GR  LL  A   +  MP  P   +WG
Sbjct: 404 SGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWG 462

Query: 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583
           +L+ ACR+H  +EL  +AA++  +LDP   G  +LLSNIYA   RW+DV ++RK MKE G
Sbjct: 463 ALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESG 522

Query: 584 ILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLE 643
           + K+ ACS +E+ N V+ F+  D +H +  +I  K  E+  ++K  GYVPD    L+ ++
Sbjct: 523 VKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVD 582

Query: 644 DEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIR 703
            +E+ E + +HSEKLAL + L+++   S IRI KN+RVC DCH  IK VSKV  REI++R
Sbjct: 583 QQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKVVDREIIVR 642

Query: 704 DRTRFHHYKDG 714
           D  RFH ++DG
Sbjct: 643 DTNRFHRFRDG 653



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 192/415 (46%), Gaps = 35/415 (8%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
           S  +  C+ L  ++Q       L  SH   N L+L+ ++ +          L  A  +F 
Sbjct: 91  SKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKC---GCLDDARRMFD 147

Query: 76  QIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLE 135
           ++P          I   S ++RP+ AL +F +ML  G   + F+   +LKA     GL  
Sbjct: 148 EMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDP 207

Query: 136 GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQ 195
           G Q+H    K G+ S  +V + LV MY  CG +  A+L FD M  +  V W+ +I G+ +
Sbjct: 208 GTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHAR 267

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
            G  +  L+L  +M+  N +P     S +LSAC+  G L  G+ VH  +I + + L A +
Sbjct: 268 KGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFI 327

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
            +TL+ MYA  G +D AK +FD+                               +V+ D+
Sbjct: 328 GNTLLDMYAKAGSIDDAKRVFDR-------------------------------LVKPDV 356

Query: 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375
           + W+ M++G A++   +E L  F +M   G++P++++ L V++AC+H G+LD+       
Sbjct: 357 VSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFEL 416

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           + K     D+      +D+  + G L+ A      M        W +++ A  +H
Sbjct: 417 MKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMH 471


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/550 (41%), Positives = 323/550 (58%), Gaps = 46/550 (8%)

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVE----PDEMVLSKILSACSRAGNLSYGEAVH 241
           W+++I  Y ++ L  +   L  +  ++  E    PD+     +L AC+   +L  G+ VH
Sbjct: 49  WNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKACAYLFSLFEGKQVH 108

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVE 301
             ++     LD ++ ++LI  YA+CG                                +E
Sbjct: 109 AHVLKLGFELDTYICNSLIHFYASCG-------------------------------YLE 137

Query: 302 DARLIFDQMVE-KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
            AR +FD+M E ++++ W+ MI  YA+       L +F EM     +PD  TM SVI AC
Sbjct: 138 TARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEMMKV-YEPDCYTMQSVIRAC 196

Query: 361 AHLGVLDQAQRIHLYI----DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV 416
             LG L     +H ++    DKN    D+ VN  ++DMY KCGSLE A++VFE M  R+V
Sbjct: 197 GGLGSLSLGMWVHAFVLKKCDKNVVC-DVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDV 255

Query: 417 ISWTSMINAFAIHGDARNALIFFNKM-KDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475
            SW S+I  FA+HG A+ AL +F +M K E I PN +TF+GVL AC+H+G+VDEG   F 
Sbjct: 256 SSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFE 315

Query: 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC-RVHGE 534
            MT EYN+ P   HYGC+VDL+ RA  ++EAL +V  MP  P+ VIW SL+ AC + H  
Sbjct: 316 MMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYKQHAS 375

Query: 535 IELAEFAAKQLLQLDPD-HDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593
           +EL+E  AKQ+ + +     GA VLLS +YA   RW DVG LRK M ++G+ K+  CS I
Sbjct: 376 VELSEEMAKQIFESNGSVCGGAYVLLSKVYASASRWNDVGLLRKLMNDKGVSKKPGCSLI 435

Query: 594 EMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA-LVDLEDEEKREVIL 652
           E+N   +EF   D +H Q+  IY+ +NE+  +L+  GY+PD   A L+D  +E K+  + 
Sbjct: 436 EINGAAHEFFAGDTNHPQSKDIYKFMNEIQEKLESVGYLPDYSGAPLIDEINEGKQNTMR 495

Query: 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712
            HSE+LA+ +GL++SK    IR+ KNLRVC DCH   KL+S++Y  EI++RDR RFHH+K
Sbjct: 496 LHSERLAIAFGLLNSKPSMPIRVFKNLRVCNDCHKVTKLISRIYNVEIIVRDRVRFHHFK 555

Query: 713 DGVCSCKDYW 722
           DG CSC DYW
Sbjct: 556 DGSCSCMDYW 565



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 201/435 (46%), Gaps = 87/435 (20%)

Query: 10  PLTLPTSTA----------ISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSL 59
           PL++ T+            ++  +S++H+KQ HAQIL+   + H+ NS    +L+ S+S 
Sbjct: 2   PLSIATTNTNTNIKHINHLLNQSNSISHVKQIHAQILR---TIHTPNSFTWNILIQSYSK 58

Query: 60  PTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHAL--KVFLKMLNEGLTIDR 117
            T                                  H+ K  L  K  +      L  D+
Sbjct: 59  STL---------------------------------HKQKAILLYKAIITEQENELFPDK 85

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDK 177
            ++P +LKA A    L EG QVH    KLGF  D ++   L+  Y +CG +  AR +FD+
Sbjct: 86  HTYPFVLKACAYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDR 145

Query: 178 M-SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236
           M  +R++V W+VMID Y + G +D VL +F EM M   EPD   +  ++ AC   G+LS 
Sbjct: 146 MCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEM-MKVYEPDCYTMQSVIRACGGLGSLSL 204

Query: 237 GEAVHEFII---DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           G  VH F++   D NV  D  + + L+ MY  CG +++AK                    
Sbjct: 205 GMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQ------------------- 245

Query: 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM-QVCGMKPDKVT 352
                       +F+ M  +D+  W+++I G+A +   + AL  F  M +V  + P+ +T
Sbjct: 246 ------------VFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSIT 293

Query: 353 MLSVISACAHLGVLDQA-QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411
            + V+SAC H G++D+      +   +      L     ++D+YA+ G ++ A  V   M
Sbjct: 294 FVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEM 353

Query: 412 R-RRNVISWTSMINA 425
             + + + W S+++A
Sbjct: 354 PIKPDAVIWRSLLDA 368



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 135/332 (40%), Gaps = 65/332 (19%)

Query: 8   TKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSL 67
           T P  L    A +   SL   KQ HA +LKL                  F L T   +SL
Sbjct: 87  TYPFVLK---ACAYLFSLFEGKQVHAHVLKL-----------------GFELDTYICNSL 126

Query: 68  --YYALSIFSQIPAPPSRVSNKFIRAISW-----SHRPKHALKVFLKMLNEGLTI---DR 117
             +YA   + +          ++   +SW     S+       + L M  E + +   D 
Sbjct: 127 IHFYASCGYLETARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEMMKVYEPDC 186

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTK---LGFGSDPFVQTGLVGMYGACGKILDARLM 174
           ++   +++A      L  GM VH    K        D  V T LV MY  CG +  A+ +
Sbjct: 187 YTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQV 246

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGN 233
           F+ MSYRD+  W+ +I G+  +G     L+ F  M K+  + P+ +    +LSAC+ +G 
Sbjct: 247 FEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGM 306

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293
           +  G    E +       + +++ +L+    + GC                     +V  
Sbjct: 307 VDEGLMYFEMMTK-----EYNVEPSLV----HYGC---------------------LVDL 336

Query: 294 YSRAGQVEDARLIFDQM-VEKDLICWSAMISG 324
           Y+RAG +++A  +  +M ++ D + W +++  
Sbjct: 337 YARAGHIQEALNVVSEMPIKPDAVIWRSLLDA 368


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/576 (36%), Positives = 337/576 (58%), Gaps = 45/576 (7%)

Query: 151 DPFVQTGLVGMYGAC--GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEE 208
           D   +T ++  +G C  G++ +AR +FD+MS R ++ W+ M+ GY QN   D+   +F+ 
Sbjct: 171 DNIARTSMI--HGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDV 228

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M      P++  +S                                  ++++  Y   G 
Sbjct: 229 M------PEKTEVS---------------------------------WTSMLMGYVQNGR 249

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
           ++ A+ LF+ + +K ++   AM+SG  + G++  AR +FD M E++   W  +I  +  N
Sbjct: 250 IEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERN 309

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN 388
               EAL LF  MQ  G++P   T++S++S CA L  L   +++H  + +  F  D+ V 
Sbjct: 310 GFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVA 369

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK-DESI 447
           + ++ MY KCG L  ++ +F+R   +++I W S+I+ +A HG    AL  F +M    S 
Sbjct: 370 SVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGST 429

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            PN VTF+  L ACS+AG+V+EG +I+ SM + + + P   HY CMVD+ GRA    EA+
Sbjct: 430 KPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAM 489

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
           E++++M   P+  +WGSL+ ACR H ++++AEF AK+L++++P++ G  +LLSN+YA   
Sbjct: 490 EMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQG 549

Query: 568 RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD-RSHKQTDQIYEKLNEVISEL 626
           RW DV ELRK MK R + K   CS  E+ N+V+ F      SH + + I + L+E+   L
Sbjct: 550 RWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLL 609

Query: 627 KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCH 686
           + AGY PD   AL D+++EEK   + +HSE+LA+ Y L+   +   IR++KNLRVC DCH
Sbjct: 610 REAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCH 669

Query: 687 NFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             IK++SKV  REI++RD  RFHH+++G CSCKDYW
Sbjct: 670 TAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 189/394 (47%), Gaps = 56/394 (14%)

Query: 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216
           GLV  Y   G+I +AR +FD M  R++V W+ ++ GY  NG  D   +LF +M     E 
Sbjct: 84  GLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMP----EK 139

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIID-NNVALDAHLQSTLITMYANCGCMDMAKGL 275
           +++  + +L    + G +     ++E I D +N+A     ++++I      G +D A+ +
Sbjct: 140 NKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIA-----RTSMIHGLCKEGRVDEAREI 194

Query: 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEAL 335
           FD++  ++++  T MV+GY +  +V+DAR IFD M EK  + W++M+ GY +N   ++A 
Sbjct: 195 FDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAE 254

Query: 336 KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395
           +LF  M V   KP        + AC                            NA+I   
Sbjct: 255 ELFEVMPV---KP--------VIAC----------------------------NAMISGL 275

Query: 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI 455
            + G +  AR VF+ M+ RN  SW ++I     +G    AL  F  M+ + + P   T I
Sbjct: 276 GQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLI 335

Query: 456 GVLYACSHAGLVDEGREIFASMTN-EYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
            +L  C+    +  G+++ A +   ++++         ++ ++ +   L ++  + +  P
Sbjct: 336 SILSVCASLASLHHGKQVHAQLVRCQFDVDVYVA--SVLMTMYIKCGELVKSKLIFDRFP 393

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
            + ++++W S+++    HG   L E A K   ++
Sbjct: 394 -SKDIIMWNSIISGYASHG---LGEEALKVFCEM 423



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 183/423 (43%), Gaps = 78/423 (18%)

Query: 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL 225
           GKI +AR +FD    + I  W+ M+ GYF N +  +   LF+EM      PD  ++S   
Sbjct: 31  GKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEM------PDRNIIS--- 81

Query: 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV 285
                                          + L++ Y   G +D A+ +FD +  +N+V
Sbjct: 82  ------------------------------WNGLVSGYMKNGEIDEARKVFDLMPERNVV 111

Query: 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345
             TA+V GY   G+V+ A  +F +M EK+ + W+ M+ G+ ++    +A KL+       
Sbjct: 112 SWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYE------ 165

Query: 346 MKPDK--VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403
           M PDK  +   S+I      G +D+A+ I   + + +    +     ++  Y +   ++ 
Sbjct: 166 MIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERS----VITWTTMVTGYGQNNRVDD 221

Query: 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463
           AR++F+ M  +  +SWTSM+  +  +G   +A   F  M  + +    +    ++     
Sbjct: 222 ARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPV----IACNAMISGLGQ 277

Query: 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM------PFAP 517
            G + + R +F SM    +       +  ++ +  R     EAL+L   M      P  P
Sbjct: 278 KGEIAKARRVFDSMKERNDAS-----WQTVIKIHERNGFELEALDLFILMQKQGVRPTFP 332

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLL--QLDPDHDGALVLLSNIYAKDKRWQDVGEL 575
            ++   S+++ C     +   +    QL+  Q D D   A VL++ +Y K       GEL
Sbjct: 333 TLI---SILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMT-MYIK------CGEL 382

Query: 576 RKS 578
            KS
Sbjct: 383 VKS 385



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 120/254 (47%), Gaps = 40/254 (15%)

Query: 101 ALKVFLKMLNEGLTIDRFSFP---PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           AL +F+ M  +G+   R +FP    IL   A    L  G QVH    +  F  D +V + 
Sbjct: 315 ALDLFILMQKQGV---RPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASV 371

Query: 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-NVEP 216
           L+ MY  CG+++ ++L+FD+   +DI+ W+ +I GY  +GL +E L +F EM +S + +P
Sbjct: 372 LMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKP 431

Query: 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276
           +E+     LSACS AG +  G  ++E       ++++      IT +  C          
Sbjct: 432 NEVTFVATLSACSYAGMVEEGLKIYE-------SMESVFGVKPITAHYAC---------- 474

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM-VEKDLICWSAMISGYAENNHPQEAL 335
                        MV    RAG+  +A  + D M VE D   W +++   A   H Q  +
Sbjct: 475 -------------MVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLG--ACRTHSQLDV 519

Query: 336 KLFNEMQVCGMKPD 349
             F   ++  ++P+
Sbjct: 520 AEFCAKKLIEIEPE 533



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 125/280 (44%), Gaps = 49/280 (17%)

Query: 260 ITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWS 319
           IT  +  G +  A+ LFD    K++    +MV+GY       DAR +FD+M ++++I W+
Sbjct: 24  ITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWN 83

Query: 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379
            ++SGY +N    EA K+F+ M      P++    +V+S                     
Sbjct: 84  GLVSGYMKNGEIDEARKVFDLM------PER----NVVSW-------------------- 113

Query: 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFF 439
                     A++  Y   G ++ A  +F +M  +N +SWT M+  F   G   +A   +
Sbjct: 114 ---------TALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLY 164

Query: 440 NKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499
             + D+    + +    +++     G VDE REIF  M+    I      +  MV  +G+
Sbjct: 165 EMIPDK----DNIARTSMIHGLCKEGRVDEAREIFDEMSERSVIT-----WTTMVTGYGQ 215

Query: 500 ANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAE 539
            N + +A ++ + MP    V  W S++     +G IE AE
Sbjct: 216 NNRVDDARKIFDVMPEKTEVS-WTSMLMGYVQNGRIEDAE 254



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 105/266 (39%), Gaps = 48/266 (18%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           +PT P  +   +  +S +SL H KQ HAQ+++        +  +  +L+T +        
Sbjct: 328 RPTFPTLISILSVCASLASLHHGKQVHAQLVR---CQFDVDVYVASVLMTMY----IKCG 380

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT-IDRFSFPPIL 124
            L  +  IF + P+    + N  I   +     + ALKVF +M   G T  +  +F   L
Sbjct: 381 ELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATL 440

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            A + A  + EG++++     + FG  P      +  + AC                   
Sbjct: 441 SACSYAGMVEEGLKIYESMESV-FGVKP------ITAHYAC------------------- 474

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
               M+D   + G F+E + + + M    VEPD  V   +L AC     L     V EF 
Sbjct: 475 ----MVDMLGRAGRFNEAMEMIDSM---TVEPDAAVWGSLLGACRTHSQLD----VAEFC 523

Query: 245 IDNNVALDAHLQSTLI---TMYANCG 267
               + ++     T I    MYA+ G
Sbjct: 524 AKKLIEIEPENSGTYILLSNMYASQG 549



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 15/198 (7%)

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448
           N  I   ++ G +  AR++F+    +++ SW SM+  +  +   R+A   F++M D +I 
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI- 79

Query: 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508
              +++ G++      G +DE R++F  M  E N+      +  +V  +     +  A  
Sbjct: 80  ---ISWNGLVSGYMKNGEIDEARKVFDLMP-ERNVVS----WTALVKGYVHNGKVDVAES 131

Query: 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG-ALVLLSNIYAKDK 567
           L   MP   N V W  ++      G I+     A +L ++ PD D  A   + +   K+ 
Sbjct: 132 LFWKMP-EKNKVSWTVMLIGFLQDGRID----DACKLYEMIPDKDNIARTSMIHGLCKEG 186

Query: 568 RWQDVGELRKSMKERGIL 585
           R  +  E+   M ER ++
Sbjct: 187 RVDEAREIFDEMSERSVI 204


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/664 (35%), Positives = 355/664 (53%), Gaps = 36/664 (5%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
           S ++ A  +F + P P +   N  I   + +     A+ +F +M   G  +D F+   ++
Sbjct: 88  SKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGLI 147

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM-SYRDI 183
            A      L++  Q+H      GF S   V    V  Y   G + +A  +F  M   RD 
Sbjct: 148 AACCDRVDLIK--QLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDE 205

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           V W+ MI  Y Q+    + L L++EM     + D   L+ +L+A +   +L  G   H  
Sbjct: 206 VSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGK 265

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           +I      ++H+ S LI  Y+ CG  D                             + D+
Sbjct: 266 LIKAGFHQNSHVGSGLIDFYSKCGGRD----------------------------GMSDS 297

Query: 304 RLIFDQMVEKDLICWSAMISGYAENN-HPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
             +F +++  DL+ W+ MISGY+ N  H +EA+K F +MQ  G +PD  + + V SAC++
Sbjct: 298 EKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSN 357

Query: 363 LGVLDQAQRIH-LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
           L    Q ++IH L I  N     + VNNA+I +Y K G+L  AR VF+RM   N +S+  
Sbjct: 358 LSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNC 417

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI  +A HG    AL  + +M D  I PN +TF+ +L AC+H G VDEG++ F +M   +
Sbjct: 418 MIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETF 477

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
            I P+ EHY CM+DL GRA  L EA   ++ MP+ P  V W +L+ ACR H  + LAE A
Sbjct: 478 KIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERA 537

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
           AK+L+ + P      V+L+N+YA   +W+++  +RKSM+ + I K+  CS IE+  + + 
Sbjct: 538 AKELMVMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHV 597

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL---WHSEKL 658
           F+  D SH    ++ E L E++ ++K  GYV D   A+V  ++  + E  +    HSEKL
Sbjct: 598 FVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGEEEMRLGHHSEKL 657

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+ +GL+S++    I +VKNLR+C DCHN IK +S V  REI++RD  RFH +KDG CSC
Sbjct: 658 AVAFGLMSTRDGEEIVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSC 717

Query: 719 KDYW 722
            DYW
Sbjct: 718 GDYW 721



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 199/425 (46%), Gaps = 27/425 (6%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +LK++A  + L  G  +H L  K    S  ++    V +Y  CG +  AR  FD     +
Sbjct: 15  LLKSVAERD-LFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPN 73

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +  ++V++  Y ++        LF+E    N +PD +  + ++S  + A        + +
Sbjct: 74  VFSYNVIVKAYAKDSKIHIARQLFDE----NPQPDTVSYNTLISGYADARETVAAMVLFK 129

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAK--------GLFDKVLLKNLVVSTAMVSGY 294
            + +    +D    S LI   A C  +D+ K        G FD        V+ A V+ Y
Sbjct: 130 RMRELGFEVDGFTLSGLIA--ACCDRVDLIKQLHCFAVSGGFDSY----SSVNNAFVTYY 183

Query: 295 SRAGQVEDARLIFDQMVE-KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           S+ G + +A  +F  M   +D + W++MI  Y ++    +AL L+ EM   G K D  T+
Sbjct: 184 SKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTL 243

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG---SLESAREVFER 410
            SV++A   L  L   ++ H  + K  F  +  V + +ID Y+KCG    +  + +VF+ 
Sbjct: 244 ASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQE 303

Query: 411 MRRRNVISWTSMINAFAIHGD-ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
           +   +++ W +MI+ ++++ + +  A+  F +M+     P+  +F+ V  ACS+     +
Sbjct: 304 ILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQ 363

Query: 470 GREIFASMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           G++I   +  + NIP  +      ++ L+ ++  L +A  + + MP   N V +  ++  
Sbjct: 364 GKQIHG-LAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMP-ELNAVSFNCMIKG 421

Query: 529 CRVHG 533
              HG
Sbjct: 422 YAQHG 426



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 152/326 (46%), Gaps = 11/326 (3%)

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
           +L  G+++H   + + VA   +L +  + +Y+ CGC+  A+  FD     N+     +V 
Sbjct: 23  DLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVK 82

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
            Y++  ++  AR +FD+  + D + ++ +ISGYA+      A+ LF  M+  G + D  T
Sbjct: 83  AYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFT 142

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           +  +I+AC     +D  +++H +     F     VNNA +  Y+K G L  A  VF  M 
Sbjct: 143 LSGLIAACCDR--VDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMD 200

Query: 413 R-RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471
             R+ +SW SMI A+  H +   AL  + +M  +    +  T   VL A +    +  GR
Sbjct: 201 GLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGR 260

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL---ELVETMPFAPNVVIWGSLMAA 528
           +    +         +   G ++D + +    R+ +   E V     +P++V+W ++++ 
Sbjct: 261 QFHGKLIKAGFHQNSHVGSG-LIDFYSKCG-GRDGMSDSEKVFQEILSPDLVLWNTMISG 318

Query: 529 CRV---HGEIELAEFAAKQLLQLDPD 551
             +   H E  +  F   Q +   PD
Sbjct: 319 YSMNEEHSEEAVKSFRQMQRIGHRPD 344



 Score = 46.2 bits (108), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 14/181 (7%)

Query: 15  TSTAISSCSSLTHMKQTHAQILK--LSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALS 72
            ++A S+ SS +  KQ H   +K  +  +  S N+ L+ L   S         +L  A  
Sbjct: 351 VTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKS--------GNLLDARR 402

Query: 73  IFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG 132
           +F ++P   +   N  I+  +       AL+++ +ML+ G+  +  +F  IL A A    
Sbjct: 403 VFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGK 462

Query: 133 LLEGMQVHGLGTKLGFGSDPFVQ--TGLVGMYGACGKILDARLMFDKMSYR-DIVPWSVM 189
           + EG +      K  F  +P  +  + ++ + G  GK+ +A    D M Y+   V W+ +
Sbjct: 463 VDEGQKYFNT-MKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAAL 521

Query: 190 I 190
           +
Sbjct: 522 L 522


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/571 (38%), Positives = 334/571 (58%), Gaps = 37/571 (6%)

Query: 153 FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN-GLFDEVLNLFEEMKM 211
           FV   LV MY   G + DA  +F  M  R++V W+ ++       G   E L    EM+ 
Sbjct: 108 FVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRR 167

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
             V  +    S +L AC   G L+   A+H  II   V LD+                  
Sbjct: 168 DGVAANSYTFSSVLGACGTPGVLA---AMHADII--KVGLDS------------------ 204

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
                      ++ V ++++  Y + G ++  R +FD+MV  DL+ W+++I+G+A++   
Sbjct: 205 -----------DVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDG 253

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
             A++LF  M+  G   ++ T+ SV+ AC  + +L+  +++H ++ K  +  DL ++NA+
Sbjct: 254 VGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHVLK--YDRDLILHNAL 311

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           +DMY KCG L  A  +F RM  R+VISW++MI+  A +G +  AL  F+ MK E   PN 
Sbjct: 312 LDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNN 371

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
           +T +GVL+ACSHAGLV++G   F SM   + I P+ EH  CMVDL GRA  L EA++ + 
Sbjct: 372 ITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIG 431

Query: 512 TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
            M F P+ VIW +L+ ACR+H    LA +AA ++L+L+P+  GA +LLSNIYA  ++W +
Sbjct: 432 EMKFEPDSVIWRTLLGACRMHKNATLASYAATEILKLEPEDQGARILLSNIYADLRQWSN 491

Query: 572 VGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY 631
             +  K+M+++G+ KE   S IE+   V+ F+  + SH  +D+I ++LN +I   K  GY
Sbjct: 492 AEKSWKTMRDQGVKKEPGRSWIELGKLVHVFIAGELSHPCSDRIVQELNRLIRRAKDLGY 551

Query: 632 VPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKL 691
           VP     L DL  E+K +++ +HSEKLA+ +G ++S +   +RI+KNLR+C DCH F KL
Sbjct: 552 VPQTEFVLQDLGTEQKEDLLKYHSEKLAIAFGTMNSMEGKPVRIMKNLRICGDCHAFAKL 611

Query: 692 VSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           VSK   + I+IRD  RFHH++ GVCSC DYW
Sbjct: 612 VSKTEGKAIIIRDPVRFHHFQHGVCSCGDYW 642



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 172/367 (46%), Gaps = 41/367 (11%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWS-HRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           AL +F  +P          + A++ +  R K AL+  ++M  +G+  + ++F  +L A  
Sbjct: 126 ALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDGVAANSYTFSSVLGACG 185

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
              G+L  M  H    K+G  SD FV++ L+  Y   G +   R +FD+M   D+V W+ 
Sbjct: 186 -TPGVLAAM--HADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNS 242

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           +I G+ Q+G     + LF  MK S    ++  L+ +L AC+    L  G  VH  ++  +
Sbjct: 243 IIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHVLKYD 302

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D  L + L+ MY  CGC+  A  LF ++  ++++  + M+SG               
Sbjct: 303 --RDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISG--------------- 345

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
                            A+N    EALK+F+ M+  G  P+ +TM+ V+ AC+H G+++ 
Sbjct: 346 ----------------LAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVED 389

Query: 369 AQRIHLYIDKNAFG--GDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINA 425
                  +DK  FG   +    N ++D+  + G L+ A +    M+   + + W +++ A
Sbjct: 390 GWHYFRSMDK-LFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGA 448

Query: 426 FAIHGDA 432
             +H +A
Sbjct: 449 CRMHKNA 455



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 157/344 (45%), Gaps = 41/344 (11%)

Query: 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL 255
           +G F   L L  ++  + V  D + L +++  C R G +  G A+H  +           
Sbjct: 44  DGPFTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHV----------- 92

Query: 256 QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315
                          +           +L VS ++VS Y++ G ++DA  +F  M ++++
Sbjct: 93  --------------SLCAHGGGGATHGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNV 138

Query: 316 ICWSAMISGYAEN-NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374
           + W+ +++  A      +EAL+   EM+  G+  +  T  SV+ AC   GVL     +H 
Sbjct: 139 VSWTTVVAALANAPGRKKEALRFLVEMRRDGVAANSYTFSSVLGACGTPGVL---AAMHA 195

Query: 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN 434
            I K     D+ V +++ID Y K G L+S R VF+ M   +++ W S+I  FA  GD   
Sbjct: 196 DIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVG 255

Query: 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH----Y 490
           A+  F +MK+     N  T   VL AC+   +++ GR++ A +        KY+     +
Sbjct: 256 AMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHVL-------KYDRDLILH 308

Query: 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
             ++D++ +   L +A  L   M    +V+ W ++++    +G 
Sbjct: 309 NALLDMYCKCGCLLDADALFSRM-HDRDVISWSTMISGLAQNGR 351


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/515 (41%), Positives = 306/515 (59%), Gaps = 33/515 (6%)

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           ++  +  P+   L+  L AC+       G  +H   +   +A  A++Q+ L+ +YA C  
Sbjct: 166 LRAGSPRPNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCE- 224

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV-EKDLICWSAMISGYAE 327
                                         QV  AR +FD M  +K+L+ WSAM+SGY+ 
Sbjct: 225 ------------------------------QVALARTVFDGMAGDKNLVAWSAMVSGYSR 254

Query: 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387
                EAL LF EMQ  G++PD+VTM+SVISACA  G LD  + +H YID+     DL +
Sbjct: 255 VGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLEL 314

Query: 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESI 447
           + A+IDMYAKCG +E AR VF+ M  ++  +W++MI  FAIHG   +AL  F++M +  +
Sbjct: 315 STALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKV 374

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            PN VTFIGVL AC+H+GLV++GR  ++ M N   I P  E+YGCMVDL  R+ LL +A 
Sbjct: 375 RPNNVTFIGVLSACAHSGLVEDGRRYWSIMQN-LGIKPSMENYGCMVDLLCRSGLLDDAY 433

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567
             V  MP +PN VIW +L+ AC+    I++AE A K+LL+L+P +    VLLSN+YA + 
Sbjct: 434 SFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLSNLYASNS 493

Query: 568 RWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627
           +W  V  LR+ MK + +      S IE+N  ++EF+ +D SH +  +I   L E+   ++
Sbjct: 494 QWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLREMADRVR 553

Query: 628 PAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHN 687
            AG+ P   + L D+ +EEK   +  HSE+LA+ YGL+ ++    IR+VKNLR C DCH 
Sbjct: 554 RAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLRFCLDCHE 613

Query: 688 FIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             K++SK Y REIV+RDR RFH +  G CSCKD+W
Sbjct: 614 VAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 123/413 (29%), Positives = 203/413 (49%), Gaps = 44/413 (10%)

Query: 4   LSQPTKPLTLPTS-------TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTS 56
           L +P +  TLP         + +  C  L  ++  HA + +L     +    L KLL + 
Sbjct: 52  LLKPKEAATLPREALEAHIVSLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKLLASC 111

Query: 57  FSLPTTTPSSLYYAL---SIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGL 113
            S P    +    +    ++F QIP P +   N  IRA+  +     AL V+ +ML  G 
Sbjct: 112 VSAPAPAAAQAAASSYARNLFDQIPDPTAFCYNSLIRALPAAGSAP-ALAVYRRMLRAGS 170

Query: 114 T-IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR 172
              + F+    LKA A      EG Q+H    + G  +  +VQTGL+ +Y  C ++  AR
Sbjct: 171 PRPNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALAR 230

Query: 173 LMFDKMSY-RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRA 231
            +FD M+  +++V WS M+ GY + G+ +E L LF EM+   VEPDE+ +  ++SAC++A
Sbjct: 231 TVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKA 290

Query: 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291
           G L  G+ VH +I    + +D  L + LI MYA CG ++ A+G+FD ++ K+    +AM+
Sbjct: 291 GALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMI 350

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351
            G++  G VEDA  +F +M+E                      LK+         +P+ V
Sbjct: 351 VGFAIHGLVEDALGLFSRMLE----------------------LKV---------RPNNV 379

Query: 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
           T + V+SACAH G+++  +R    +        +     ++D+  + G L+ A
Sbjct: 380 TFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDA 432



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 157/314 (50%), Gaps = 20/314 (6%)

Query: 304 RLIFDQMVEKDLICWSAMISGY-AENNHPQEALKLFNEMQVCGM-KPDKVTMLSVISACA 361
           R +FDQ+ +    C++++I    A  + P  AL ++  M   G  +P+  T+   + ACA
Sbjct: 129 RNLFDQIPDPTAFCYNSLIRALPAAGSAP--ALAVYRRMLRAGSPRPNSFTLAFALKACA 186

Query: 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR-RRNVISWT 420
            +    + +++H    +        V   ++++YAKC  +  AR VF+ M   +N+++W+
Sbjct: 187 AVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWS 246

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +M++ ++  G    AL  F +M+   ++P+ VT + V+ AC+ AG +D G+ + A + + 
Sbjct: 247 AMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYI-DR 305

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIE--LA 538
             I    E    ++D++ +  L+  A  + + M    +   W +++    +HG +E  L 
Sbjct: 306 KGITVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIHGLVEDALG 364

Query: 539 EFAAKQLLQLDPDHDGALVLL-----SNIYAKDKRW----QDVGELRKSMKERGILKERA 589
            F+    L++ P++   + +L     S +    +R+    Q++G ++ SM+  G + +  
Sbjct: 365 LFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLG-IKPSMENYGCMVDLL 423

Query: 590 CSRIEMNNEVYEFL 603
           C R  + ++ Y F+
Sbjct: 424 C-RSGLLDDAYSFV 436


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/699 (32%), Positives = 378/699 (54%), Gaps = 64/699 (9%)

Query: 55  TSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT 114
           T FS+P    +S++   +I  +      R S+   +  +   +  H  + F   L+E   
Sbjct: 9   TRFSVPIVFQNSIFRFSTISFKTHFQNGRFSDGNEQFATLCSKG-HIREAFESFLSEIWA 67

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
             R  F  +L+A    + +  G Q+H L    G  SD F+   L+ +Y   G++  A  +
Sbjct: 68  EPRL-FSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVAL 126

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE------------------- 215
           FD+M  R+I+  ++MI  Y   G  +   NLF+EM   NV                    
Sbjct: 127 FDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEAL 186

Query: 216 ------------PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263
                       PDE  L  +L  C+  G L  G+ VH +++                  
Sbjct: 187 LLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVM------------------ 228

Query: 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323
             CG               NLVV  ++   Y +AG + D   + + M +  L+ W+ ++S
Sbjct: 229 -KCG------------FECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMS 275

Query: 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383
           G A+  + +  L  +  M++ G +PDK+T +SVIS+C+ L +L Q ++IH    K     
Sbjct: 276 GKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASS 335

Query: 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443
           ++ V ++++ MY++CG L+ + + F   + R+V+ W+SMI A+  HG    A+  FN+M+
Sbjct: 336 EVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEME 395

Query: 444 DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503
            E++  N +TF+ +LYACSH GL D+G  +F  M  +Y +  + +HY C+VDL GR+  L
Sbjct: 396 QENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCL 455

Query: 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563
            EA  ++ +MP   + +IW +L++AC++H   E+A   A ++L++DP    + VLL+NIY
Sbjct: 456 EEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLLANIY 515

Query: 564 AKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVI 623
           +   RWQ+V E+R++MK++ + KE   S +E+ N+V++F   D  H +  +I + L E+ 
Sbjct: 516 SSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYLEELT 575

Query: 624 SELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCE 683
           SE+K  GYVPD  S L D+++EEK +++  HSEKLA+ + L+++ +   IR++KNLRVC 
Sbjct: 576 SEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRVMKNLRVCS 635

Query: 684 DCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           DCH  IK +S++   EI++RD +RFHH+K+G CSC DYW
Sbjct: 636 DCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/664 (35%), Positives = 359/664 (54%), Gaps = 36/664 (5%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
           S ++ A  +F +IP P +   N  I   + +     A+ +F +M   G  +D F+   ++
Sbjct: 88  SKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLI 147

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKM-SYRDI 183
            A      L++  Q+H      GF S   V    V  Y   G + +A  +F  M   RD 
Sbjct: 148 AACCDRVDLIK--QLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDE 205

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           V W+ MI  Y Q+    + L L++EM     + D   L+ +L+A +   +L  G   H  
Sbjct: 206 VSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGK 265

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
           +I      ++H+ S LI  Y+ CG  D   G++D                         +
Sbjct: 266 LIKAGFHQNSHVGSGLIDFYSKCGGCD---GMYD-------------------------S 297

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNH-PQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362
             +F +++  DL+ W+ MISGY+ N    +EA+K F +MQ  G +PD  + + V SAC++
Sbjct: 298 EKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSN 357

Query: 363 LGVLDQAQRIH-LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTS 421
           L    Q ++IH L I  +     + VNNA+I +Y K G+L+ AR VF+RM   N +S+  
Sbjct: 358 LSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNC 417

Query: 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481
           MI  +A HG    AL+ + +M D  I PN +TF+ VL AC+H G VDEG+E F +M   +
Sbjct: 418 MIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETF 477

Query: 482 NIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541
            I P+ EHY CM+DL GRA  L EA   ++ MP+ P  V W +L+ ACR H  + LAE A
Sbjct: 478 KIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERA 537

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYE 601
           A +L+ + P      V+L+N+YA  ++W+++  +RKSM+ + I K+  CS IE+  + + 
Sbjct: 538 ANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHV 597

Query: 602 FLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL---WHSEKL 658
           F+  D SH    ++ E L E++ ++K  GYV D   A+V  ++  + +  +    HSEKL
Sbjct: 598 FVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKL 657

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+ +GL+S++    + +VKNLR+C DCHN IK +S V  REI++RD  RFH +KDG CSC
Sbjct: 658 AVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSC 717

Query: 719 KDYW 722
            DYW
Sbjct: 718 GDYW 721



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 195/424 (45%), Gaps = 25/424 (5%)

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           +LK++A  + L  G  +H L  K    S  ++    V +Y  CG++  AR  F      +
Sbjct: 15  LLKSVAERD-LFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPN 73

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242
           +  ++V++  Y ++        LF+E+     +PD +  + ++S  + A        + +
Sbjct: 74  VFSYNVIVKAYAKDSKIHIARQLFDEIP----QPDTVSYNTLISGYADARETFAAMVLFK 129

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAK--------GLFDKVLLKNLVVSTAMVSGY 294
            +      +D    S LI   A C  +D+ K        G FD        V+ A V+ Y
Sbjct: 130 RMRKLGFEVDGFTLSGLIA--ACCDRVDLIKQLHCFSVSGGFDSY----SSVNNAFVTYY 183

Query: 295 SRAGQVEDARLIFDQMVE-KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353
           S+ G + +A  +F  M E +D + W++MI  Y ++    +AL L+ EM   G K D  T+
Sbjct: 184 SKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTL 243

Query: 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES---AREVFER 410
            SV++A   L  L   ++ H  + K  F  +  V + +ID Y+KCG  +    + +VF+ 
Sbjct: 244 ASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQE 303

Query: 411 MRRRNVISWTSMINAFAIHGD-ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
           +   +++ W +MI+ ++++ + +  A+  F +M+     P+  +F+ V  ACS+     +
Sbjct: 304 ILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQ 363

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
            ++I       +    +      ++ L+ ++  L++A  + + MP   N V +  ++   
Sbjct: 364 CKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMP-ELNAVSFNCMIKGY 422

Query: 530 RVHG 533
             HG
Sbjct: 423 AQHG 426



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 155/320 (48%), Gaps = 10/320 (3%)

Query: 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVS 292
           +L  G+++H   + + VA   +L +  + +Y+ CG +  A+  F      N+     +V 
Sbjct: 23  DLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVK 82

Query: 293 GYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352
            Y++  ++  AR +FD++ + D + ++ +ISGYA+      A+ LF  M+  G + D  T
Sbjct: 83  AYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFT 142

Query: 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412
           +  +I+AC     +D  +++H +     F     VNNA +  Y+K G L  A  VF  M 
Sbjct: 143 LSGLIAACCDR--VDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMD 200

Query: 413 R-RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471
             R+ +SW SMI A+  H +   AL  + +M  +    +  T   VL A +    +  GR
Sbjct: 201 ELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGR 260

Query: 472 EIFASMTNEYNIPPKYEHYGCMVDLF---GRANLLREALELVETMPFAPNVVIWGSLMAA 528
           +    +         +   G ++D +   G  + + ++ ++ + +  +P++V+W ++++ 
Sbjct: 261 QFHGKLIKAGFHQNSHVGSG-LIDFYSKCGGCDGMYDSEKVFQEI-LSPDLVVWNTMISG 318

Query: 529 CRVHGEIELAEFAAKQLLQL 548
             ++   EL+E A K   Q+
Sbjct: 319 YSMNE--ELSEEAVKSFRQM 336


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/566 (38%), Positives = 338/566 (59%), Gaps = 9/566 (1%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHR--PKHALKVFLKMLNEGLTIDRFSFPPILKAI 127
           A ++F  IP P     N  + A++   R     AL+    M  +   ++ +SF   L A 
Sbjct: 102 ARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSAC 161

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
           A  + L  G QVHGL  +     D  + T LV MY  C + +DAR +FD M  R++V W+
Sbjct: 162 AAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWN 221

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
            +I  Y QNG   E L LF EM  +   PDE+ LS ++SAC+       G  VH  ++  
Sbjct: 222 SLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKR 281

Query: 248 N-VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
           + +  D  L + L+ MYA CG    A+ +FD +  +++V  T++++GY+++  VEDA+++
Sbjct: 282 DRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVV 341

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F QMVEK++I W+ +I+ YA+N   +EA++LF +++   + P   T  +V++AC ++ VL
Sbjct: 342 FSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVL 401

Query: 367 DQAQRIHLYIDKNAF------GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420
              Q+ H+++ K  F        D+ V N+++DMY K GS++   +VFERM  R+ +SW 
Sbjct: 402 QLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWN 461

Query: 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           +MI  +A +G A++AL  F +M   + +P+ VT IGVL AC H+GLVDEGR  F  MT +
Sbjct: 462 AMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTED 521

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540
           + I P  +HY CMVDL GRA  L+EA EL++ MP  P+ V+W SL+ ACR+H  +EL E 
Sbjct: 522 HGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGER 581

Query: 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVY 600
            A +L +LDP++ G  VLLSN+YA+  +W DV  +R+SMK+RG+ K+  CS IE+ +++ 
Sbjct: 582 TAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMN 641

Query: 601 EFLTADRSHKQTDQIYEKLNEVISEL 626
            FL  D  H   ++I+  L  +  E+
Sbjct: 642 VFLARDNRHPCRNEIHSTLRIIQMEM 667



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 206/475 (43%), Gaps = 102/475 (21%)

Query: 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR 181
           P+   +  A  L      HG   K     + F+   LV  Y   G++ +AR +FD +  R
Sbjct: 22  PLADLLRSAPSLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLR 81

Query: 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMK----------------------------MSN 213
           +   ++ ++  Y + G  DE   LFE +                             ++ 
Sbjct: 82  NTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAA 141

Query: 214 VEPDEMVL-----SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           +  D+ VL     +  LSAC+   +L  GE VH  +  +  A D H+ + L+ MYA C  
Sbjct: 142 MHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCER 201

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
              A+ +FD +  +N+V   ++++ Y + G V                            
Sbjct: 202 PVDARRVFDAMPERNVVSWNSLITCYEQNGPV---------------------------- 233

Query: 329 NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY-IDKNAFGGDLRV 387
               EAL LF EM   G  PD+VT+ SV+SACA L    + +++H + + ++    D+ +
Sbjct: 234 ---GEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVL 290

Query: 388 NNAIIDMYAKCG-------------------------------SLESAREVFERMRRRNV 416
           NNA++DMYAKCG                               ++E A+ VF +M  +NV
Sbjct: 291 NNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNV 350

Query: 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476
           I+W  +I A+A +G+   A+  F ++K +SI P   T+  VL AC +  ++  G++    
Sbjct: 351 IAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVH 410

Query: 477 MTNE---YNIPPKYEHY--GCMVDLFGRANLLREALELVETMPFAPNVVIWGSLM 526
           +  E   ++  P+ + +    +VD++ +   + +  ++ E M    NV  W +++
Sbjct: 411 VLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVS-WNAMI 464



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 161/319 (50%), Gaps = 3/319 (0%)

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
           A +L    A H  ++ + VA +  L +TL++ YA  G +  A+ +FD + L+N     A+
Sbjct: 30  APSLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNAL 89

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN--NHPQEALKLFNEMQVCGMKP 348
           +S Y+R G+ ++AR +F+ + + D   ++A+++  A +   H  +AL+    M       
Sbjct: 90  LSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVL 149

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
           +  +  S +SACA    L   +++H  + ++    D+ +  A++DMYAKC     AR VF
Sbjct: 150 NAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVF 209

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
           + M  RNV+SW S+I  +  +G    AL+ F +M      P+ VT   V+ AC+      
Sbjct: 210 DAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAER 269

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           EGR++ A M     +         +VD++ +     EA  + ++MP + +VV   S++A 
Sbjct: 270 EGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP-SRSVVSETSILAG 328

Query: 529 CRVHGEIELAEFAAKQLLQ 547
                 +E A+    Q+++
Sbjct: 329 YAKSANVEDAQVVFSQMVE 347


>gi|302782465|ref|XP_002973006.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
 gi|300159607|gb|EFJ26227.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
          Length = 698

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/691 (34%), Positives = 382/691 (55%), Gaps = 41/691 (5%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI--DRFSFPPILKAI 127
           A ++F  +P          I A   + + + AL ++  ++     I  D F F  +L A 
Sbjct: 11  ARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADAFIFSSVLAAC 70

Query: 128 ARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWS 187
           AR + L +G+++H    K G   D  +Q  LV MY  CG+I  A+ +FD++++RD+V W+
Sbjct: 71  ARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFDRITHRDVVSWN 130

Query: 188 VMIDGYFQNGLFDEVLNLFEEMKMSN------------------------------VEPD 217
            M+    + G  +  L +++EM  ++                              V P+
Sbjct: 131 AMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALELYREMILSVRPN 190

Query: 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG-LF 276
              L+ +L+AC+R G+LS G  V +  I + +  DA + +TL+ +YA  G +  A+  LF
Sbjct: 191 ASTLATVLAACTRLGDLSSGALVRDGAIQSGLDRDAVVGTTLVNLYARFGDVIAAREVLF 250

Query: 277 DKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336
           D +  + +V   AMV+ +++  +V++A  +F +M +K +I W+AMI+G+ +N  P++AL+
Sbjct: 251 DSMKDRTVVSWNAMVTAFAQNARVDEAEKLFREMPDKSVISWNAMIAGFGQNGRPKQALE 310

Query: 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396
           LF  M + G++P ++T  SV+ ACA+L      + I   +D+ A   D+ V N+I +MY 
Sbjct: 311 LFRRMDLEGLQPSRMTYCSVLDACANLTASSLGRFICDGMDE-ALAKDISVANSICNMYG 369

Query: 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456
           KCG  E AR+ F  M  R+V+SWT++I A++ +G +  AL  F  M    ++PNG+T I 
Sbjct: 370 KCGLPELARQTFLEMTYRDVVSWTAIIAAYSQNGYSSEALDIFRIMVQAGVEPNGITLIN 429

Query: 457 VLYACSHAGLVDEGREIFASMT--NEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514
            L ACSH  L DEG +IF+S+   + Y +     H+ C +DL GRA  L++A  L+  MP
Sbjct: 430 TLSACSHGALFDEGSDIFSSLVSGDYYGVTANESHFLCAIDLLGRAGYLKDAETLITKMP 489

Query: 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH---DGALVLLSNIYAKDKRWQD 571
           F    V W SL++ACR   +++ A   A  L +LD          V+LSNIYA       
Sbjct: 490 FKAGAVAWTSLLSACRTFRDLKRAGRVANHLFELDESSIKDPAPYVMLSNIYASAGDRAA 549

Query: 572 VGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY 631
             +LR  ++ +   K    S I +  +  EF + D +H + D  Y +L  +  ++K AGY
Sbjct: 550 EMKLRDQIRIKCRKKLPGKSTITIKGQTNEFYSLDETHPRRDDAYNELRRLFQKMKEAGY 609

Query: 632 VPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKL 691
           VPD   A +  E+EE  + + +HSEKLAL +G++++  ++ + IVKNLRVC DCHN IK 
Sbjct: 610 VPDTRIAEM--EEEETEQSLSYHSEKLALAFGVLNTPPEASLCIVKNLRVCSDCHNVIKF 667

Query: 692 VSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +SK   R+I +RD TRFHH+++G CSC+D W
Sbjct: 668 LSKHLNRKIAVRDATRFHHFENGFCSCRDCW 698



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/395 (32%), Positives = 211/395 (53%), Gaps = 18/395 (4%)

Query: 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE--PDE 218
           MY  CG++ DAR +FD M  R+   W+++I  Y   G   E L L+  +  S+ E   D 
Sbjct: 1   MYRDCGRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADA 60

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
            + S +L+AC+R   L  G  +HE I+   V  D  LQ+ L+TMYA CG +D AK +FD+
Sbjct: 61  FIFSSVLAACARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFDR 120

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           +  +++V   AMVS  + AG +E A  I+ +MV  D++CWS MIS  A   H +EAL+L+
Sbjct: 121 ITHRDVVSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALELY 180

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398
            EM +  ++P+  T+ +V++AC  LG L     +     ++    D  V   ++++YA+ 
Sbjct: 181 REM-ILSVRPNASTLATVLAACTRLGDLSSGALVRDGAIQSGLDRDAVVGTTLVNLYARF 239

Query: 399 GSLESAREV-FERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
           G + +AREV F+ M+ R V+SW +M+ AFA +     A   F +M D+S+    +++  +
Sbjct: 240 GDVIAAREVLFDSMKDRTVVSWNAMVTAFAQNARVDEAEKLFREMPDKSV----ISWNAM 295

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE--LVETM-- 513
           +      G   +  E+F  M  E  + P    Y  ++D    ANL   +L   + + M  
Sbjct: 296 IAGFGQNGRPKQALELFRRMDLE-GLQPSRMTYCSVLD--ACANLTASSLGRFICDGMDE 352

Query: 514 PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
             A ++ +  S+   C ++G+  L E A +  L++
Sbjct: 353 ALAKDISVANSI---CNMYGKCGLPELARQTFLEM 384


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/586 (38%), Positives = 335/586 (57%), Gaps = 2/586 (0%)

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H    K G    P     LV  Y     + DA  +FD+   RDI  +S ++     +  
Sbjct: 107 MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSAS 166

Query: 199 FDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
            +  L +   M  ++ + PD  V+S + S  +R  +   G  +H   + +    D  ++S
Sbjct: 167 PELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKS 226

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
           +L+ MY  CG  D  + +FD +  KN VV TA+VSGY+  G+ E+A  +F  M  ++L  
Sbjct: 227 SLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFA 286

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS-VISACAHLGVLDQAQRIHLYI 376
           W+A+ISG         A++LF EM+  G++ D   +LS VI   A L      +++H   
Sbjct: 287 WTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGST 346

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            +  F  ++ V NA+IDMY+KC  + SAREVFE +  R+VISWT+M+   A HG A  AL
Sbjct: 347 MRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEAL 406

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             +++M      PN VTF+G++YACSHAGLV +GR++F SM NEY I P+ +HY C +DL
Sbjct: 407 ALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDL 466

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
             R+  L EA EL+ TMP+ P+   WG+L++AC  + + E+    + +LL+L P      
Sbjct: 467 LSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTY 526

Query: 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           +LLSN+YA + +W  V ++RK M    I KE   S IE   E   F   +      ++I 
Sbjct: 527 ILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIM 586

Query: 617 EKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIV 676
             L E++ E++  GYVPD  S + DLE+ EK   +  HSE+LA+ +GLI S   S IR+V
Sbjct: 587 VFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVV 646

Query: 677 KNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KNLRVC DCH  +KL+S++  R+IV+RD +RFHH++ G CSC ++W
Sbjct: 647 KNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 206/423 (48%), Gaps = 19/423 (4%)

Query: 28  MKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNK 87
           ++  HA+ILK   +HH  N      L+++++     P +L+    +F + P     + + 
Sbjct: 104 VRGMHARILKEGLAHHPPNP---AALVSAYAKSRLLPDALH----LFDETPRRDIYIYSS 156

Query: 88  FIRAISWSHRPKHALKVFLKMLN-EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKL 146
            + A+S S  P+ AL +   ML+ + L  D F    +    AR      G Q+H      
Sbjct: 157 LLTAVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVS 216

Query: 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLF 206
            +  D  V++ LV MY  CG   D R +FD MS ++ V W+ ++ GY  NG  +E L LF
Sbjct: 217 PYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLF 276

Query: 207 EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
             M   N+     ++S +++     G +   E   E   D     DA + S +I   A+ 
Sbjct: 277 RSMPGRNLFAWTALISGLVNTGESVGAV---ELFVEMRRDGVRIDDAFVLSIVIGGSADL 333

Query: 267 GCMDMAKGLFDKVL----LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
               + + L    +    L N++V  A++  YS+   +  AR +F+ +  +D+I W+ M+
Sbjct: 334 AAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMV 393

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
            G A++   +EAL L++ M + G KP++VT + +I AC+H G++ + +++   + KN +G
Sbjct: 394 VGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESM-KNEYG 452

Query: 383 GDLRVNN--AIIDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFF 439
              R+ +    +D+ ++ G L  A E+   M    +  +W ++++A   + DA   +   
Sbjct: 453 ITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRIS 512

Query: 440 NKM 442
           +K+
Sbjct: 513 DKL 515


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/658 (35%), Positives = 347/658 (52%), Gaps = 36/658 (5%)

Query: 69  YALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA 128
           +A S+F  +    S   N  I  +  +   + A+K +  M   GL    F+    L + A
Sbjct: 156 HARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCA 215

Query: 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV 188
               +L G Q HG G KLG   D  V   L+ +Y    ++ + + +F  M  RD V W+ 
Sbjct: 216 SLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNT 275

Query: 189 MIDGYFQNGL-FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDN 247
           +I     +G    E + +F EM  +   P+ +    +L+  S          +H  I+  
Sbjct: 276 VIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKY 335

Query: 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307
           NV  D  +++ L+  Y   G                               ++E+   IF
Sbjct: 336 NVKDDNAIENALLACYGKSG-------------------------------EMENCEEIF 364

Query: 308 DQMVE-KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
            +M E +D + W++MISGY  N    +A+ L   M   G + D  T  +V+SACA +  L
Sbjct: 365 SRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATL 424

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
           +    +H    +     D+ + +A++DMY+KCG ++ A   F  M  RN+ SW SMI+ +
Sbjct: 425 ECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGY 484

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
           A HG   NAL  F +MK     P+ +TF+GVL ACSH GLVDEG E F SMT  Y + P+
Sbjct: 485 ARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPR 544

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA-CRVHG-EIELAEFAAKQ 544
            EHY CMVDL GRA  L +    +  MP  PN++IW +++ A CR +G + EL   AA+ 
Sbjct: 545 VEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEM 604

Query: 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604
           L  +DP +    VLLSN+YA   +W+D+   R++M+E  + KE  CS + M + V+ F+ 
Sbjct: 605 LFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVA 664

Query: 605 ADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGL 664
            D SH +   IY KL E+  +++ AGYVP I  AL DLE E K E++ +HSEKLA+ + +
Sbjct: 665 GDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELLSYHSEKLAVAF-V 723

Query: 665 ISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           ++      IRI+KNLRVC DCH+  K +SKV  R IV+RD  RFHH++DG CSC+DYW
Sbjct: 724 LTRNSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRDYW 781



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 137/526 (26%), Positives = 233/526 (44%), Gaps = 56/526 (10%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++P          I   + +  P+ A  V  +M+ EG   +RF+F   ++A   
Sbjct: 54  ARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQ- 112

Query: 130 AEGLL---EGMQVHGLGTKLGFGSDPF-VQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
            E +L   +G QVHG   + G       V  GL+ MY  CG I  AR +F  M  +D V 
Sbjct: 113 -ESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVS 171

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII 245
           W+ MI G  QN  F++ +  +  M+ + + P    L   LS+C+  G +  G+  H   I
Sbjct: 172 WNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGI 231

Query: 246 DNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305
              + +D  + +TL+ +YA                                  ++ + + 
Sbjct: 232 KLGLDMDVSVSNTLLALYA-------------------------------ETSRLAECQK 260

Query: 306 IFDQMVEKDLICWSAMISGYAENNHP-QEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
           +F  M+E+D + W+ +I   A++     EA+++F EM   G  P++VT +++++  + L 
Sbjct: 261 VFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLS 320

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMI 423
               + +IH  I K     D  + NA++  Y K G +E+  E+F RM  RR+ +SW SMI
Sbjct: 321 TSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMI 380

Query: 424 NAFAIHGD---ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480
           + + IH +       L++    + + +D    TF  VL AC+    ++ G E+ A     
Sbjct: 381 SGY-IHNELLCKAMDLVWLMMQRGQRLDC--FTFATVLSACATVATLECGMEVHACAIRA 437

Query: 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMA--ACRVHGEIELA 538
             +         +VD++ +   +  A      MP   N+  W S+++  A   HG+  L 
Sbjct: 438 C-LESDVVIGSALVDMYSKCGRIDYASRFFNLMP-VRNLYSWNSMISGYARHGHGDNALR 495

Query: 539 EFAAKQLLQLDPDH---DGALVLLSNIYAKDKRWQDVGELRKSMKE 581
            F   +L    PDH    G L   S+I   D+ +    E  KSM E
Sbjct: 496 LFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGF----EYFKSMTE 537



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 180/398 (45%), Gaps = 44/398 (11%)

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           K GF SD F+   L+ +Y   G  + AR +FD+M  R+ V W+ +I GY QNG+ ++   
Sbjct: 28  KHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACG 87

Query: 205 LFEEMKMSNVEPDEMVLSKILSACS------RAGNLSYGEAVHEFIIDNNVALDAHLQST 258
           + +EM      P+       + AC       R G   +G A+   + D  VA+     + 
Sbjct: 88  VLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVG----NG 143

Query: 259 LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
           LI MYA CG +D A+ +F  ++ K+ V   +M++G              DQ         
Sbjct: 144 LINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITG-------------LDQ--------- 181

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
                    N   ++A+K +N M+  G+ P    ++S +S+CA LG +   Q+ H    K
Sbjct: 182 ---------NKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIK 232

Query: 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG-DARNALI 437
                D+ V+N ++ +YA+   L   ++VF  M  R+ +SW ++I A A  G     A+ 
Sbjct: 233 LGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIE 292

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F +M      PN VTFI +L   S         +I A +  +YN+         ++  +
Sbjct: 293 VFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHA-LILKYNVKDDNAIENALLACY 351

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEI 535
           G++  +    E+   M    + V W S+++   +H E+
Sbjct: 352 GKSGEMENCEEIFSRMSERRDEVSWNSMISG-YIHNEL 388



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 194/433 (44%), Gaps = 50/433 (11%)

Query: 10  PLTLPTSTAISSCSSLTHM---KQTHAQILKLSHSHH-SQNSLLLKLLLTSFSLPTTTPS 65
           P      +A+SSC+SL  +   +QTH + +KL      S ++ LL L   +        S
Sbjct: 202 PSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAET--------S 253

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRP-KHALKVFLKMLNEGLTIDRFSFPPIL 124
            L     +FS +        N  I A++ S      A++VFL+M+  G + +R +F  +L
Sbjct: 254 RLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLL 313

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS-YRDI 183
             ++         Q+H L  K     D  ++  L+  YG  G++ +   +F +MS  RD 
Sbjct: 314 ATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDE 373

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243
           V W+ MI GY  N L  + ++L   M       D    + +LSAC+    L  G  VH  
Sbjct: 374 VSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHAC 433

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDA 303
            I   +  D  + S L+ MY+ CG +D A   F+ + ++NL    +M+SGY+R G     
Sbjct: 434 AIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHG----- 488

Query: 304 RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL 363
                                     H   AL+LF  M++ G  PD +T + V+SAC+H+
Sbjct: 489 --------------------------HGDNALRLFTRMKLSGQLPDHITFVGVLSACSHI 522

Query: 364 GVLDQAQRIHLYIDKNAFGGDLRVN--NAIIDMYAKCGSLESAREVFERMR-RRNVISWT 420
           G++D+       + +  +G   RV   + ++D+  + G L+       +M  + N++ W 
Sbjct: 523 GLVDEGFEYFKSMTE-VYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWR 581

Query: 421 SMINAFAIHGDAR 433
           +++ A    G+ R
Sbjct: 582 TVLGA-CCRGNGR 593



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 33/234 (14%)

Query: 241 HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300
           H  ++ +    D  L +TLI +Y   G    A+ LFD++  +N V    ++SGY++ G  
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM- 81

Query: 301 EDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360
                                         P++A  +  EM   G  P++    S I AC
Sbjct: 82  ------------------------------PEDACGVLKEMIFEGFLPNRFAFGSAIRAC 111

Query: 361 AHLGVLDQAQR-IHLYIDKNAFG-GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS 418
               +  +  R +H Y  +       + V N +I+MYAKCG ++ AR VF  M  ++ +S
Sbjct: 112 QESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVS 171

Query: 419 WTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472
           W SMI     +    +A+  +N M+   + P+    I  L +C+  G +  G++
Sbjct: 172 WNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQ 225



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
           A   HL + K+ F  DL + N +I++Y + G   SAR++F+ M  RN ++W  +I+ +  
Sbjct: 19  ANLFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQ 78

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV-DEGREI 473
           +G   +A     +M  E   PN   F   + AC  + L   +GR++
Sbjct: 79  NGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQV 124


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/637 (35%), Positives = 357/637 (56%), Gaps = 36/637 (5%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  + A S +  P  AL+VF + L      +  +F   L A AR   L     V      
Sbjct: 77  NGLLSAHSRAGAPGAALRVF-RALPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAFA 135

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
            G+G D FV + L+ +Y  CG + +A  +FD M  +D V WS M+ G+   G   E L +
Sbjct: 136 AGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAM 195

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           +  M+   V  DE+V+  ++ AC   GN   G +VH  ++ +                  
Sbjct: 196 YSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRH------------------ 237

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
             CM M           ++V +T++VS Y++ G ++ A  +F  M  ++ + WSA+ISG+
Sbjct: 238 --CMRM-----------DVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGF 284

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385
           A+N    EAL LF E+Q  G++P    ++S + ACA +G L   + IH +I +       
Sbjct: 285 AQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRR-LEWQC 343

Query: 386 RVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDE 445
            +  A++DMY+KCGSLESAR++F ++  R+++ W ++I     HG   +AL  F ++ + 
Sbjct: 344 ILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNET 403

Query: 446 SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505
            I P+  TF  +L A SH+GLV+EG+  F  M  E+ I P  +HY C+VDL  R+ L+ E
Sbjct: 404 GIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEE 463

Query: 506 ALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565
           A +++ +M   P + IW  L++ C  + ++EL E  AK++L+L P+  G L L+SN+YA 
Sbjct: 464 ANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAA 523

Query: 566 DKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISE 625
            K+W  V E+RK MK+ G  K    S IE+    + F+  D+SH Q  +I + + ++ SE
Sbjct: 524 AKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNSE 583

Query: 626 LKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDC 685
           ++  GYVP       DL+++   +++ +HSE+LA+ +GL+++   + + I+KNLRVC DC
Sbjct: 584 MRKLGYVPRTEFVYHDLDED---QLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDC 640

Query: 686 HNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           H+ IK +SK+  REIV+RD  RFHH+KDG CSC DYW
Sbjct: 641 HDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/576 (35%), Positives = 341/576 (59%), Gaps = 31/576 (5%)

Query: 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLF 206
           GF  D +++  ++ M+  CG ++DA  +FD+M  R+ V W  +I GY  +G + E   LF
Sbjct: 162 GFEPDQYMRNRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLF 221

Query: 207 EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
             M+    +      + ++ A +    +  G  +H   I   +  D              
Sbjct: 222 ILMREEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQD-------------- 267

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
                            + VS A++  YS+ G +EDA  +FD+M +K ++ W+++I+GYA
Sbjct: 268 -----------------IFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYA 310

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
            + + +EAL L++EM+  G+K D  T   +I  C+ L  + +A+++H  + +N FG D+ 
Sbjct: 311 LHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVV 370

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
            N A++D Y+K G ++ AR VF+RM  RN+ISW ++I  +  HG    A+  F KM  E 
Sbjct: 371 ANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREG 430

Query: 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
           + PN VTF+ VL ACS +GL + G EIF SMT ++ + P+  H+ CM++L GR  LL EA
Sbjct: 431 MMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEA 490

Query: 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566
             L+   PF P   +W +L+ ACRVHG +EL +FAA++L  ++P+     ++L NIY   
Sbjct: 491 YALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNIYNSS 550

Query: 567 KRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL 626
            + ++  ++ +++K +G+    ACS IE+NN+ + FL+ D+ H Q +++  K++E++  +
Sbjct: 551 GKLKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQIEKVVGKVDELMLNI 610

Query: 627 KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCH 686
              GYVP+  + ++   DE + ++ ++HSEKLA+ YGL+++ + + ++IV++ R+C DCH
Sbjct: 611 SKLGYVPEEQNFMLPDVDENEEKIRMYHSEKLAIAYGLLNTLEKTPLQIVQSHRICSDCH 670

Query: 687 NFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           + IKL++ +  REIVIRD +RFHH++DG CSC DYW
Sbjct: 671 SVIKLIAMITKREIVIRDASRFHHFRDGSCSCGDYW 706



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 194/446 (43%), Gaps = 70/446 (15%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A  +F ++PA  +      I     S     A ++F+ M  E       +F  +++A A 
Sbjct: 186 ACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASAG 245

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            E +  G Q+H    K G G D FV   L+ MY  CG + DA  +FD+M  + IV W+ +
Sbjct: 246 LEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSI 305

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I GY  +G  +E L+L+ EM+ S V+ D    S I+  CSR  +++  + VH  ++ N  
Sbjct: 306 IAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGF 365

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            LD    + L+  Y+  G +D A+ +FD++  +N++   A+++GY   G           
Sbjct: 366 GLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHG----------- 414

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
                               H +EA+ +F +M   GM P+ VT L+V+SAC+  G+    
Sbjct: 415 --------------------HGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGL---- 450

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
                                           E   E+F+ M R + +   +M  A  I 
Sbjct: 451 -------------------------------FERGWEIFQSMTRDHKVKPRAMHFACMIE 479

Query: 430 GDARNALI--FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
              R  L+   +  ++     P    +  +L AC   G ++ G+  FA+       P K 
Sbjct: 480 LLGREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLELGK--FAAEKLYGMEPEKL 537

Query: 488 EHYGCMVDLFGRANLLREALELVETM 513
            +Y  +++++  +  L+EA ++ +T+
Sbjct: 538 SNYIVLLNIYNSSGKLKEAADVFQTL 563



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 144/309 (46%), Gaps = 13/309 (4%)

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
            SL  A  +F ++P       N  I   +     + AL ++ +M + G+ +D F+F  I+
Sbjct: 282 GSLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIII 341

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
           +  +R   +    QVH    + GFG D    T LV  Y   GK+ DAR +FD+MS R+I+
Sbjct: 342 RICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNII 401

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVHEF 243
            W+ +I GY  +G  +E +++FE+M    + P+ +    +LSACS +G    G E     
Sbjct: 402 SWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFERGWEIFQSM 461

Query: 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV-VSTAMVSGYSRAGQVED 302
             D+ V   A   + +I +    G +D A  L  K   +    +  A++      G +E 
Sbjct: 462 TRDHKVKPRAMHFACMIELLGREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLEL 521

Query: 303 ARLIFDQ---MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
            +   ++   M  + L  +  +++ Y  +   +EA  +F  ++  G++        ++ A
Sbjct: 522 GKFAAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLR--------MLPA 573

Query: 360 CAHLGVLDQ 368
           C+ + V +Q
Sbjct: 574 CSWIEVNNQ 582



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 101/208 (48%), Gaps = 3/208 (1%)

Query: 332 QEALKLFNEMQV-CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNA 390
           ++AL++F   ++  G      T  ++I+AC  L  +   +R+  Y+  N F  D  + N 
Sbjct: 113 RDALEMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNR 172

Query: 391 IIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450
           ++ M+ KCG +  A  +F+ M  RN +SW ++I+ +   G+   A   F  M++E  D  
Sbjct: 173 VLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCG 232

Query: 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELV 510
             TF  ++ A +   ++  GR++  S   +  +         ++D++ +   L +A  + 
Sbjct: 233 PRTFATMIRASAGLEIIFPGRQLH-SCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVF 291

Query: 511 ETMPFAPNVVIWGSLMAACRVHGEIELA 538
           + MP    +V W S++A   +HG  E A
Sbjct: 292 DEMP-DKTIVGWNSIIAGYALHGYSEEA 318


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/596 (36%), Positives = 354/596 (59%), Gaps = 10/596 (1%)

Query: 6   QPTKPLTLPTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           Q +K L     + + SC S++ +KQ  A I            +L KL+  +FS+ ++   
Sbjct: 2   QCSKLLKGTYISLLKSCKSMSQLKQIQAHIF--CFGLQQDRDILNKLM--AFSMDSSL-G 56

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125
              YA  IF+ I  P   + N  I+A       + A+ +F ++   G+  D +++P +LK
Sbjct: 57  DFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLK 116

Query: 126 AIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP 185
            I     + EG ++H    K G   DP+V   L+ MY   G +     +F++M  RD V 
Sbjct: 117 GIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVS 176

Query: 186 WSVMIDGYFQNGLFDEVLNLFEEMKM-SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
           W++MI GY +   F+E ++++  M+M SN +P+E  +   LSAC+   NL  G+ +H++I
Sbjct: 177 WNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYI 236

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
             N + L   + + L+ MY  CGC+ +A+ +FD +++KN+   T+MV+GY   GQ++ AR
Sbjct: 237 A-NELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQAR 295

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
            +F++   +D++ W+AMI+GY + NH ++A+ LF EMQ+ G++PDK  ++++++ CA LG
Sbjct: 296 YLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLG 355

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMIN 424
            L+Q + IH YID+N    D  V+ A+I+MYAKCG +E + E+F  ++  +  SWTS+I 
Sbjct: 356 ALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIIC 415

Query: 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIP 484
             A++G    AL  F  M+   + P+ +TF+ VL AC HAGLV+EGR++F SM++ Y+I 
Sbjct: 416 GLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIE 475

Query: 485 PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVI---WGSLMAACRVHGEIELAEFA 541
           P  EHYGC +DL GRA LL+EA ELV+ +P   N +I   +G+L++ACR +G I++ E  
Sbjct: 476 PNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERL 535

Query: 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNN 597
           A  L ++         LL++IYA   RW+DV ++R  MK+ GI K    S IE++ 
Sbjct: 536 ATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEVDG 591


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/604 (36%), Positives = 345/604 (57%), Gaps = 34/604 (5%)

Query: 122 PILKAIARAEGLLEGMQ-VHGLGTKLGFGSDPFVQTGLVGM-YGACGKILDARLMFDKMS 179
           PI  +I  A   L+ +Q +H      G G    + T L+   Y A   I   R +F  + 
Sbjct: 20  PIYHSIILAGPRLKPLQQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIP 79

Query: 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239
             D   +  +I    +     E L  +  M ++N+       S ++ + +     S GE 
Sbjct: 80  KPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGET 139

Query: 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQ 299
           +H  +      LDA++Q+ L++ YA                               ++G 
Sbjct: 140 IHCHVYICGYGLDAYVQAALVSFYA-------------------------------KSGH 168

Query: 300 VEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359
           V  AR +FD+M EK ++ W++MISGY +N   +EA++LF  MQ  G+KPD  T +S++SA
Sbjct: 169 VMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSA 228

Query: 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISW 419
           CA +G +     +H YI +N F  ++ +  A+++MY++CG++  AREVF+ M  +N+++W
Sbjct: 229 CAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAW 288

Query: 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479
           T+MI+ + +HG    A+  FN+M  +   PN VTF+ VL AC+HAGLVDEGR+IF +M  
Sbjct: 289 TAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQ 348

Query: 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVE-TMPFAPNVVIWGSLMAACRVHGEIELA 538
           EY + P  EH  CMVD+ GRA  L EA + ++ T P  P   +W +++ AC++H   +L 
Sbjct: 349 EYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLG 408

Query: 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 598
              A+ LL ++P++ G  V+LSNIYA   R   V ++R  M    + KE   S I+++++
Sbjct: 409 VEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDVDHK 468

Query: 599 VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKL 658
           VY F   D+SH +T+QIY  L+E++S  + AGY+P   S + ++E+EE+   + +HSEKL
Sbjct: 469 VYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVMHEVEEEEREYALRYHSEKL 528

Query: 659 ALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSC 718
           A+ +GL+ +     IRIVKNLR+CEDCH  IK +S +  REI +RDR RFHH+KDG CSC
Sbjct: 529 AIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANREINVRDRLRFHHFKDGSCSC 588

Query: 719 KDYW 722
           +DYW
Sbjct: 589 QDYW 592



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/411 (31%), Positives = 207/411 (50%), Gaps = 42/411 (10%)

Query: 25  LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV 84
           L  ++Q HA+I+          SL+ KLL  SF+    +P S  Y   +F  IP P + +
Sbjct: 32  LKPLQQIHARIIITGLGR--TRSLITKLL--SFAYAAASPIS--YTRRLFFSIPKPDTFL 85

Query: 85  SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
            +  I   S    P+ +L  + +ML   ++   ++F  ++K+ A       G  +H    
Sbjct: 86  FHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVY 145

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
             G+G D +VQ  LV  Y   G ++ AR +FDKM  + +V W+ MI GY QNG   E + 
Sbjct: 146 ICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVE 205

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           LF  M+   V+PD      +LSAC++ G +  G  VHE+I  N                 
Sbjct: 206 LFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARN----------------- 248

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
              C D+           N+V+ TA+++ YSR G V  AR +FD M EK+++ W+AMISG
Sbjct: 249 ---CFDL-----------NVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISG 294

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
           Y  + H  +A++LFNEM   G +P+ VT ++V+SACAH G++D+ ++I   + K  +G  
Sbjct: 295 YGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTM-KQEYGLV 353

Query: 385 LRVNNAI--IDMYAKCGSLESAREVFERMRRRNVIS--WTSMINAFAIHGD 431
             V + +  +DM  + G L  A +  +    +      WT+M+ A  +H +
Sbjct: 354 PSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKN 404


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/554 (39%), Positives = 330/554 (59%), Gaps = 35/554 (6%)

Query: 171 ARLMFDKMSYRDIVPWSVMIDGYFQNGL-FDEVLNLFEEMKMSNV-EPDEMVLSKILSAC 228
           AR +F ++    I  ++ +I G     +   E ++LF++M       P+   ++ +L AC
Sbjct: 43  ARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKAC 102

Query: 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVST 288
           S    L  G+ +H  I+ +  +   ++QS+L+  Y+ C                      
Sbjct: 103 SIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCE--------------------- 141

Query: 289 AMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP 348
                     ++  AR +FD++ E++L+CWSAM+SGYA      EAL +F EMQV G++P
Sbjct: 142 ----------EITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEP 191

Query: 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408
           D+V+++ V+SACA +G LD  + +H YI K     DL +N A+I+MYAKCG +E ARE+F
Sbjct: 192 DEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIF 251

Query: 409 ERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468
           + MR ++  +W+SMI   AIHG A +AL  F++M++    PN VTFIG+L AC+H GLV 
Sbjct: 252 DEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVS 311

Query: 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAA 528
           +G+  ++SM  E  I P  EHYGCMVDL  R  L+ EA +    +P  P+ VIW +L+ A
Sbjct: 312 DGKRYWSSML-ELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIP-TPDPVIWRTLLVA 369

Query: 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKER 588
              +  ++ AE  A +LL+L+P      ++L+N+YA   + + V  +RK MKE GI    
Sbjct: 370 YTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMMKENGIKALP 429

Query: 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKR 648
            C+ IE++  V+ F+T D SH + ++I + L +V  ++  +GY P +   L  + DEEK 
Sbjct: 430 GCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPFVSVVLHLVNDEEKE 489

Query: 649 EVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRF 708
            V+  HSE+LA+ YGL+ +K  + IRIVKNLRVC DCH   K++SK+Y REI++RDR RF
Sbjct: 490 NVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRF 549

Query: 709 HHYKDGVCSCKDYW 722
           H + +G CSCKDYW
Sbjct: 550 HKFVNGTCSCKDYW 563



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 203/403 (50%), Gaps = 38/403 (9%)

Query: 28  MKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTP-SSLYYALSIFSQIPAPPSRVSN 86
           ++Q HA+IL       S + L+ K+L    S    +P  +  YA  IFSQIP P     N
Sbjct: 4   LRQIHARILTHVPPISSVSFLISKIL----SFAALSPFGNFDYARKIFSQIPNPGIFAYN 59

Query: 87  KFIRAISWSHRP-KHALKVFLKMLNEGL-TIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144
             IR   ++  P K  + +F  M+ +G    + F+   +LKA +    L EG Q+H    
Sbjct: 60  SVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQIL 119

Query: 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLN 204
           + GF S P+VQ+ LV  Y  C +I  AR +FD+++ R++V WS M+ GY + G+ +E L 
Sbjct: 120 RSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALI 179

Query: 205 LFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264
           +F EM++  +EPDE+ L  +LSAC+  G L  G+ VH +I    + +D  L + LI MYA
Sbjct: 180 MFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYA 239

Query: 265 NCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISG 324
            CGC++ A+ +FD++ +K+    ++M+ G +  G  ED                      
Sbjct: 240 KCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAED---------------------- 277

Query: 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384
                    AL +F+ M+    KP+ VT + ++SACAH G++   +R    + +      
Sbjct: 278 ---------ALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSMLELGIEPS 328

Query: 385 LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
           +     ++D+  + G ++ A +    +   + + W +++ A+ 
Sbjct: 329 MEHYGCMVDLLCRGGLIDEAYDFALIIPTPDPVIWRTLLVAYT 371



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 164/323 (50%), Gaps = 15/323 (4%)

Query: 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP-QEALKLFNEMQVCGM-KPD 349
           +  S  G  + AR IF Q+    +  ++++I G      P +E + LF +M   G   P+
Sbjct: 32  AALSPFGNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPN 91

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409
             TM  V+ AC+ +  L++ ++IH  I ++ F     V +++++ Y+KC  +  AR+VF+
Sbjct: 92  TFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFD 151

Query: 410 RMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE 469
            +  RN++ W++M++ +A  G    ALI F +M+   I+P+ V+ +GVL AC+  G +D 
Sbjct: 152 EITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDI 211

Query: 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529
           G+ + A +     I    E    +++++ +   + +A E+ + M    +   W S++   
Sbjct: 212 GKWVHAYIKKRM-IHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKA-WSSMIVGL 269

Query: 530 RVHG--EIELAEFAAKQLLQLDPDHDGALVLLS-----NIYAKDKR-WQDVGEL--RKSM 579
            +HG  E  L  F+  +  Q  P+H   + +LS      + +  KR W  + EL    SM
Sbjct: 270 AIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSMLELGIEPSM 329

Query: 580 KERGILKERACSRIEMNNEVYEF 602
           +  G + +  C R  + +E Y+F
Sbjct: 330 EHYGCMVDLLC-RGGLIDEAYDF 351



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 136/308 (44%), Gaps = 14/308 (4%)

Query: 10  PLTLPTSTAISSCS---SLTHMKQTHAQILK--LSHSHHSQNSLLLKLLLTSFSLPTTTP 64
           P T   +  + +CS   +L   KQ HAQIL+   S S + Q+SL+      +F    +  
Sbjct: 90  PNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLV------NF---YSKC 140

Query: 65  SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPIL 124
             +  A  +F +I        +  +   +       AL +F +M   G+  D  S   +L
Sbjct: 141 EEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVL 200

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            A A    L  G  VH    K     D  + T L+ MY  CG I  AR +FD+M  +D  
Sbjct: 201 SACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSK 260

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            WS MI G   +GL ++ LN+F  M+ +  +P+ +    ILSAC+  G +S G+     +
Sbjct: 261 AWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSM 320

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           ++  +         ++ +    G +D A      +   + V+   ++  Y++   ++ A 
Sbjct: 321 LELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPTPDPVIWRTLLVAYTKNRMLQKAE 380

Query: 305 LIFDQMVE 312
           ++  +++E
Sbjct: 381 MVAGKLLE 388


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/534 (39%), Positives = 313/534 (58%), Gaps = 31/534 (5%)

Query: 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN 248
           M+ GY       + L LF  +  S  + D++ L+    AC     L  G+ +H   I   
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 249 VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308
              D H+ S ++ MY  CG  DM                              +A ++F+
Sbjct: 61  FDSDLHVNSGILDMYIKCG--DMV-----------------------------NAGIVFN 89

Query: 309 QMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368
            +   D + W++MISG  +N +  +AL++++ M+   + PD+ T  ++I A + +  L+Q
Sbjct: 90  YISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQ 149

Query: 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428
            +++H  + K     D  V  +++DMYAKCG++E A  +F++M  RN+  W +M+   A 
Sbjct: 150 GRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQ 209

Query: 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488
           HG+A  A+  F  MK   I+P+ V+FIG+L ACSHAGL  E  E   SM N+Y I P+ E
Sbjct: 210 HGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIE 269

Query: 489 HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548
           HY C+VD  GRA L++EA +++ETMPF  +  I  +L+ ACR+ G++E  +  A +L  L
Sbjct: 270 HYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVEXGKRVAARLFAL 329

Query: 549 DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRS 608
           +P    A VLLSNIYA   RW DV + RK MK + + K+   S I++ N ++ F+  DRS
Sbjct: 330 EPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRS 389

Query: 609 HKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSK 668
           H Q D IY+K+ E++  ++  GYVPD    L+D+EDEEK   + +HSEKLA+ YGLIS+ 
Sbjct: 390 HPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTP 449

Query: 669 KDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
             + IR++KNLRVC DCHN IK +SKV+ REIV+RD  RFHH++DGVCSC DYW
Sbjct: 450 ASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 503



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 164/336 (48%), Gaps = 35/336 (10%)

Query: 99  KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           K AL++F  +   G   D+ +     KA      L +G Q+H    K GF SD  V +G+
Sbjct: 12  KKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGI 71

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           + MY  CG +++A ++F+ +S  D V W+ MI G   NG  D+ L ++  M+ S V PDE
Sbjct: 72  LDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDE 131

Query: 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278
              + ++ A S    L  G  +H  +I  +   D  + ++L+ MYA CG ++ A  LF K
Sbjct: 132 YTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKK 191

Query: 279 VLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338
           + ++N+ +  AM+ G ++ G  E                               EA+ LF
Sbjct: 192 MNVRNIALWNAMLVGLAQHGNAE-------------------------------EAVNLF 220

Query: 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVN--NAIIDMYA 396
             M+  G++PD+V+ + ++SAC+H G+  +A   +L+   N +G +  +   + ++D   
Sbjct: 221 KSMKSHGIEPDRVSFIGILSACSHAGLTSEAYE-YLHSMPNDYGIEPEIEHYSCLVDALG 279

Query: 397 KCGSLESAREVFERMRRRNVISWT-SMINAFAIHGD 431
           + G ++ A +V E M  +   S   +++ A  I GD
Sbjct: 280 RAGLVQEADKVIETMPFKASASINRALLGACRIQGD 315



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 138/306 (45%), Gaps = 12/306 (3%)

Query: 5   SQPTKPLTLPTSTAISSCSSL-THMKQTHAQILKLS-HSHHSQNSLLLKLLLTSFSLPTT 62
            + +  +TL T+     C  L    KQ HA  +K    S    NS +L + +        
Sbjct: 25  GEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKC------ 78

Query: 63  TPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPP 122
               +  A  +F+ I AP        I     +     AL+++ +M    +  D ++F  
Sbjct: 79  --GDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFAT 136

Query: 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD 182
           ++KA +    L +G Q+H    KL   SDPFV T LV MY  CG I DA  +F KM+ R+
Sbjct: 137 LIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRN 196

Query: 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG-EAVH 241
           I  W+ M+ G  Q+G  +E +NLF+ MK   +EPD +    ILSACS AG  S   E +H
Sbjct: 197 IALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLH 256

Query: 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSRAGQV 300
               D  +  +    S L+      G +  A  + + +  K +  ++ A++      G V
Sbjct: 257 SMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDV 316

Query: 301 EDARLI 306
           E  + +
Sbjct: 317 EXGKRV 322


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/649 (35%), Positives = 364/649 (56%), Gaps = 39/649 (6%)

Query: 14  PTSTAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFS--------------L 59
           P +  + S  +L+  +  HA+ILK   S  +  + LL  L+++++              +
Sbjct: 22  PLADLLRSAPNLSGARAAHARILK---SPVAGETFLLNTLVSTYARLGRLRDARRVFDEI 78

Query: 60  PTTTPSSLYYALS-------------IFSQIPAPPSRVSNKFIRAISWSHR--PKHALKV 104
           P     S    LS             +F  IP P     N  + A++   R     AL+ 
Sbjct: 79  PLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRF 138

Query: 105 FLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA 164
              M  +   ++ +SF   L A A  +    G QVHGL  +     D  +++ LV MY  
Sbjct: 139 LAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAK 198

Query: 165 CGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224
           C +  DAR +FD M  R++V W+ +I  Y QNG   E L LF EM  +   PDE+ LS +
Sbjct: 199 CERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSV 258

Query: 225 LSACSRAGNLSYGEAVHEFIID-NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN 283
           +SAC+       G  VH  ++  + +  D  L + L+ MYA CG    A+ +FD +  ++
Sbjct: 259 MSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRS 318

Query: 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343
           +V  T++++GY+++  VEDA+++F QMVEK++I W+ +I+ YA+N   +EA++LF +++ 
Sbjct: 319 IVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKR 378

Query: 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF------GGDLRVNNAIIDMYAK 397
             + P   T  +V++AC ++  L   Q+ H+++ K  F        D+ V N+++DMY K
Sbjct: 379 DSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLK 438

Query: 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV 457
            GS++   +VFERM  R+ +SW +MI  +A +G A++AL  F +M   + +P+ VT IGV
Sbjct: 439 TGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGV 498

Query: 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517
           L AC H+GLVDEGR  F SMT ++ I P  +HY CMVDL GRA  L+EA EL+  MP  P
Sbjct: 499 LSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEP 558

Query: 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577
           + V+W SL+ ACR+H  +EL E+ A +L +LDP + G  VLLSN+YA+  +W +V  +R+
Sbjct: 559 DSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRR 618

Query: 578 SMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL 626
           SMK+RG+ K+  CS IE+  ++  FL  D+ H   ++I+  L  +  E+
Sbjct: 619 SMKDRGVSKQPGCSWIEIGRKMNVFLARDKRHPCRNEIHNTLRIIQMEM 667


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/516 (38%), Positives = 320/516 (62%), Gaps = 33/516 (6%)

Query: 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC 268
           M++  VE +++    +LS  +  G+L  G  VH  +    + +D                
Sbjct: 1   MEIRGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVD---------------- 44

Query: 269 MDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN 328
                          ++V TA+V+ Y +   VE+AR  F+++   +++ WSAM++ YA+N
Sbjct: 45  ---------------VIVGTALVNMYGKCQSVEEARAAFEKISRPNVVSWSAMLAAYAQN 89

Query: 329 NHPQEALKLFNEMQVC--GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386
            H + AL+L+ EM     GM P++VT ++++ AC+ LG L + ++IH  + +  F  DL 
Sbjct: 90  GHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLV 149

Query: 387 VNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES 446
           V NA+++ Y +CGSL  A+ VF+ MRRR+VISW+SMI+AFA  G    A+  +++M  E 
Sbjct: 150 VCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEG 209

Query: 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506
             P+ + FI VL+ACS++G+V+   + F S+  +  + P  EHY CMVD+ GRA  LR+A
Sbjct: 210 TLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDA 269

Query: 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566
            +L+  MPF P  +++ ++++AC+++ ++E  E AA+ + +LDP++    + L+NIY+  
Sbjct: 270 EDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAA 329

Query: 567 KRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISEL 626
           KR +D   +RK M+ERGI K+  CS IE+ + V+EF+  D+ H Q D+IY ++  +  ++
Sbjct: 330 KRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQM 389

Query: 627 KPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCH 686
           K AGY  D    L D+E++EK  ++ +HSEKLA+ +GLIS+   + +RIVKNLRVC DCH
Sbjct: 390 KEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCH 449

Query: 687 NFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              K++SKV  REI++RD  RFHH+ DG+CSC DYW
Sbjct: 450 AATKVISKVTGREILVRDTNRFHHFLDGMCSCNDYW 485



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 139/308 (45%), Gaps = 44/308 (14%)

Query: 112 GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDA 171
           G+  ++ ++  +L        L EG +VH      G   D  V T LV MYG C  + +A
Sbjct: 5   GVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEA 64

Query: 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS--NVEPDEMVLSKILSACS 229
           R  F+K+S  ++V WS M+  Y QNG     L L+ EM  +   + P+ +    +L ACS
Sbjct: 65  RAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACS 124

Query: 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA 289
             G L+ G  +H  + +     D  + + L+  Y  CG +  AK +FD +  ++++  ++
Sbjct: 125 FLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSS 184

Query: 290 MVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD 349
           M+S +++ G+V+                               EA++L++ M   G  PD
Sbjct: 185 MISAFAQRGRVD-------------------------------EAMELYHRMLSEGTLPD 213

Query: 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI------IDMYAKCGSLES 403
            +  +SV+ AC++ GV++ +      I      GD +V   +      +D+  + G L  
Sbjct: 214 DIIFISVLFACSNSGVVEASGDFFRSIV-----GDTQVEPTLEHYACMVDVLGRAGKLRD 268

Query: 404 AREVFERM 411
           A ++   M
Sbjct: 269 AEDLLRLM 276



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 147/318 (46%), Gaps = 18/318 (5%)

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKM--LNEGLTIDRFSFPPI 123
           S+  A + F +I  P     +  + A + +   + AL+++ +M    +G+  +R +F  +
Sbjct: 60  SVEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITL 119

Query: 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183
           L A +    L EG ++H    + GF +D  V   LV  YG CG + DA+++FD M  RD+
Sbjct: 120 LDACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDV 179

Query: 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL-SYGEAVHE 242
           + WS MI  + Q G  DE + L+  M      PD+++   +L ACS +G + + G+    
Sbjct: 180 ISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRS 239

Query: 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL-KNLVVSTAMVSG---YSRAG 298
            + D  V       + ++ +    G +  A+ L   +      ++   M+S    Y+   
Sbjct: 240 IVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVE 299

Query: 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS 358
           + E A  +  ++  ++   +  + + Y+    P++A ++   M+  G+K           
Sbjct: 300 RGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKK--------P 351

Query: 359 ACAHLGVLDQAQRIHLYI 376
            C+ + VLD   R+H +I
Sbjct: 352 GCSWIEVLD---RVHEFI 366


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/586 (38%), Positives = 335/586 (57%), Gaps = 2/586 (0%)

Query: 139 VHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGL 198
           +H    K G    P     LV  Y     + DA  +FD+   RDI  +S ++     +  
Sbjct: 25  MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSAS 84

Query: 199 FDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQS 257
            +  L +   M  ++ + PD  V+S + S  +R  +   G  +H   + +    D  ++S
Sbjct: 85  PELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKS 144

Query: 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
           +L+ MY  CG  D  + +FD +  KN VV TA+VSGY+  G+ E+A  +F  M  ++L  
Sbjct: 145 SLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFA 204

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS-VISACAHLGVLDQAQRIHLYI 376
           W+A+ISG         A++LF EM+  G++ D   +LS VI   A L      +++H   
Sbjct: 205 WTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGST 264

Query: 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436
            +  F  ++ V NA+IDMY+KC  + SAREVFE +  R+VISWT+M+   A HG A  AL
Sbjct: 265 MRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEAL 324

Query: 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496
             +++M      PN VTF+G++YACSHAGLV +GR++F SM NEY I P+ +HY C +DL
Sbjct: 325 ALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDL 384

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556
             R+  L EA EL+ TMP+ P+   WG+L++AC  + + E+    + +LL+L P      
Sbjct: 385 LSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTY 444

Query: 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 616
           +LLSN+YA + +W  V ++RK M    I KE   S IE   E   F   +      ++I 
Sbjct: 445 ILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIM 504

Query: 617 EKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIV 676
             L E++ E++  GYVPD  S + DLE+ EK   +  HSE+LA+ +GLI S   S IR+V
Sbjct: 505 VFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVV 564

Query: 677 KNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           KNLRVC DCH  +KL+S++  R+IV+RD +RFHH++ G CSC ++W
Sbjct: 565 KNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 610



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 205/423 (48%), Gaps = 19/423 (4%)

Query: 28  MKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNK 87
           ++  HA+ILK   +HH  N      L+++++     P     AL +F + P     + + 
Sbjct: 22  VRGMHARILKEGLAHHPPNP---AALVSAYAKSRLLPD----ALHLFDETPRRDIYIYSS 74

Query: 88  FIRAISWSHRPKHALKVFLKMLN-EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKL 146
            + A+S S  P+ AL +   ML+ + L  D F    +    AR      G Q+H      
Sbjct: 75  LLTAVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVS 134

Query: 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLF 206
            +  D  V++ LV MY  CG   D R +FD MS ++ V W+ ++ GY  NG  +E L LF
Sbjct: 135 PYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLF 194

Query: 207 EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
             M   N+     ++S +++     G +   E   E   D     DA + S +I   A+ 
Sbjct: 195 RSMPGRNLFAWTALISGLVNTGESVGAV---ELFVEMRRDGVRIDDAFVLSIVIGGSADL 251

Query: 267 GCMDMAKGLFDKVL----LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322
               + + L    +    L N++V  A++  YS+   +  AR +F+ +  +D+I W+ M+
Sbjct: 252 AAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMV 311

Query: 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG 382
            G A++   +EAL L++ M + G KP++VT + +I AC+H G++ + +++   + KN +G
Sbjct: 312 VGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESM-KNEYG 370

Query: 383 GDLRVNN--AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNALIFF 439
              R+ +    +D+ ++ G L  A E+   M    +  +W ++++A   + DA   +   
Sbjct: 371 ITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRIS 430

Query: 440 NKM 442
           +K+
Sbjct: 431 DKL 433


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/605 (38%), Positives = 335/605 (55%), Gaps = 52/605 (8%)

Query: 138 QVHGLGTKLGFGSDP---FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
           Q+H    +  +  +P   F+   ++ +  +   +  A  +FD +       W+ +I    
Sbjct: 66  QLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACA 125

Query: 195 QN-GLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
            +    +E   L+ +M +     PD+     +L AC+     S G+ VH  I+ +    D
Sbjct: 126 HDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGD 185

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
            ++ + LI +Y +CGC+D+A                               R +FD+M E
Sbjct: 186 VYVNNGLIHLYGSCGCLDLA-------------------------------RKVFDEMPE 214

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           + L+ W++MI           AL+LF EMQ    +PD  TM SV+SACA LG L      
Sbjct: 215 RSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWA 273

Query: 373 HLYIDKNA---FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           H ++ +        D+ V N++I+MY KCGSL  A +VF+ M++R++ SW +MI  FA H
Sbjct: 274 HAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATH 333

Query: 430 GDARNALIFFNKMKD--ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
           G A  A+ FF++M D  E++ PN VTF+G+L AC+H G V++GR+ F  M  +Y I P  
Sbjct: 334 GRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPAL 393

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLM-AACRVHGEIELAEFAAKQLL 546
           EHYGC+VDL  RA  + EA+++V +MP  P+ VIW SL+ A C+    +EL+E  A+ ++
Sbjct: 394 EHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNII 453

Query: 547 QLDPDHD-------GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
               D++       GA VLLS +YA   RW DVG +RK M E GI KE  CS IE+N   
Sbjct: 454 GTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGIS 513

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA-LVDLEDEEKREVIL-WHSEK 657
           +EF   D SH QT QIY++L  +   L+  GY+PD   A LVD  ++  +E  L  HSE+
Sbjct: 514 HEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSER 573

Query: 658 LALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCS 717
           LA+ +GLI+    + IRI KNLRVC DCH   KL+SKV+  EI++RDR RFHH+KDG CS
Sbjct: 574 LAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCS 633

Query: 718 CKDYW 722
           C DYW
Sbjct: 634 CLDYW 638



 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 130/413 (31%), Positives = 209/413 (50%), Gaps = 43/413 (10%)

Query: 21  SCSSLTHMKQTHAQILKLSHSHHSQNSLLL-KLLLTSFSLPTTTPSSLYYALSIFSQIPA 79
           +CS ++ +KQ HA  L+ ++        L  K+L  S S      S + YA  +F  I  
Sbjct: 57  TCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSF-----SDVNYAFRVFDSIEN 111

Query: 80  PPSRVSNKFIRAISWS-HRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLEGM 137
             S + N  IRA +    R + A  ++ KML  G  + D+ +FP +LKA A   G  EG 
Sbjct: 112 HSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGK 171

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           QVH    K GFG D +V  GL+ +YG+CG +  AR +FD+M  R +V W+ MID   + G
Sbjct: 172 QVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFG 231

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII---DNNVALDAH 254
            +D  L LF EM+ S  EPD   +  +LSAC+  G+LS G   H F++   D +VA+D  
Sbjct: 232 EYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 290

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           ++++LI MY  CG + MA+ +F  +  ++L    AM+ G++  G+ E+A   FD+MV+K 
Sbjct: 291 VKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDK- 349

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA-QRIH 373
                       EN                 ++P+ VT + ++ AC H G +++  Q   
Sbjct: 350 -----------REN-----------------VRPNSVTFVGLLIACNHRGFVNKGRQYFD 381

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINA 425
           + +        L     I+D+ A+ G +  A ++   M  + + + W S+++A
Sbjct: 382 MMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDA 434


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/531 (38%), Positives = 313/531 (58%), Gaps = 35/531 (6%)

Query: 86  NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
           N  +   +   RPK A  V+ +++ +G   D F+FP +LK+ A+  G+ EG QVHG+  K
Sbjct: 3   NALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVIIK 62

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
           +GF  + +V+  LV  Y  C +  DA  +FD+M  RD+V W+ +I GY + GLFDE + L
Sbjct: 63  MGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGL 122

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN 265
           F  M   +VEP+      +L AC R G LS G+ +H     +   +   + + L+ MY  
Sbjct: 123 FLRM---DVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVK 179

Query: 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
           C                               G +  A+ +FD++ EKD++ W+++ISG 
Sbjct: 180 C-------------------------------GCLPGAKQVFDELAEKDIVSWTSIISGL 208

Query: 326 AENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385
            + N P+EAL+LF +MQ  G++PD + + SV+SACA LG LD  + +H +ID+ A   D+
Sbjct: 209 VQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDI 268

Query: 386 RVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDE 445
           ++  A++DMYAKCG +E + ++F  M  +NV++W +++N  A+HG A   L  F +M   
Sbjct: 269 QIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRV 328

Query: 446 SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN-EYNIPPKYEHYGCMVDLFGRANLLR 504
            + PN VTF+ +L AC H GLV+EGR+ F  M   +YN+PP+ EHYGCMVDL  RA LL 
Sbjct: 329 GMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLD 388

Query: 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564
           EALEL + MP +P+V I G+L++AC+ +G  EL +    + ++LD    G  VLLSNI+A
Sbjct: 389 EALELTKAMPMSPDVRIMGALLSACKENGNTELPQEILDRFVELDSHDSGVYVLLSNIHA 448

Query: 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQI 615
            ++RW DV  +R+ MKE+GI K    + IE++ + +EF+  D  H Q  +I
Sbjct: 449 INQRWDDVTRIRRLMKEKGIKKPPGSTVIELDGKAHEFIVGDTRHPQDKRI 499



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 117/238 (49%), Gaps = 11/238 (4%)

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           ++A++SGYA  + P+ A  ++  +   G  PD  T  +V+ +CA    + + +++H  I 
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
           K  F  ++ V N+++  Y+ C     A  VF+ M  R+V+SWT +I+ +   G    A+ 
Sbjct: 62  KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA-SMTNEYNIPPKYEHYGCMVDL 496
            F +M    ++PN  TF+ VL AC   G +  G+ I   S  + + +    E    ++D+
Sbjct: 122 LFLRM---DVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGV--GLEVSNALMDM 176

Query: 497 FGRANLLREALELVETMPFAPNVVIWGSLMAA---CRVHGEIELAEFAAKQLLQLDPD 551
           + +   L  A ++ + +    ++V W S+++    C    E  L  F   Q   ++PD
Sbjct: 177 YVKCGCLPGAKQVFDELA-EKDIVSWTSIISGLVQCNCPKE-ALELFQDMQSSGIEPD 232


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/535 (39%), Positives = 312/535 (58%), Gaps = 34/535 (6%)

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEP--DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           GY +N L    L LF  M  S+     DE       SA +R  +     ++H  I     
Sbjct: 170 GYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGF 229

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
             +A + +T++  YA  G  D+                             E AR +FD 
Sbjct: 230 ERNAGVVNTMLDSYAKGGSRDL-----------------------------EVARKVFDT 260

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG--MKPDKVTMLSVISACAHLGVLD 367
           M E+D++ W++MI+ YA+N    EA+ L+++M   G  +K + V + +V+ ACAH G + 
Sbjct: 261 M-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQ 319

Query: 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFA 427
             +RIH  + +     ++ V  +I+DMY+KCG +E A   F +++ +N++SW++MI  + 
Sbjct: 320 TGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYG 379

Query: 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
           +HG  + AL  F +MK   + PN +TFI VL ACSHAGL+DEGR  + +M  E+ I    
Sbjct: 380 MHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGV 439

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
           EHYGCMVDL GRA  L EA  L++ M   P+  IWG+L++ACR+H  +ELAE + K+L +
Sbjct: 440 EHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFE 499

Query: 548 LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607
           LD  + G  VLLSNIYA+ + W+DV  +R  +K R I K    S  E+  ++Y F   D+
Sbjct: 500 LDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDK 559

Query: 608 SHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISS 667
           SH Q  +IY  L +++  ++ AGYVP+  S L DL++EEK   +  HSEKLA+ + L++S
Sbjct: 560 SHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNS 619

Query: 668 KKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
              S I I+KNLRVC DCH  +K ++K+  REI+IRD  RFHH+KDG+CSC+DYW
Sbjct: 620 VPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 169/339 (49%), Gaps = 42/339 (12%)

Query: 100 HALKVFLKML--NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157
           H+L++F  M+  +    +D  +      A AR         +H L  K+GF  +  V   
Sbjct: 179 HSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNT 238

Query: 158 LVGMYGACGK--ILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM--KMSN 213
           ++  Y   G   +  AR +FD M  RD+V W+ MI  Y QNG+  E + L+ +M      
Sbjct: 239 MLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGG 297

Query: 214 VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           ++ + + LS +L AC+ AG +  G+ +H  ++                            
Sbjct: 298 IKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMG------------------------- 332

Query: 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQE 333
                 L +N+ V T++V  YS+ G+VE A   F ++ EK+++ WSAMI+GY  +   QE
Sbjct: 333 ------LEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQE 386

Query: 334 ALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN--AI 391
           AL++F EM+  G++P+ +T +SV++AC+H G+LD+  R      K  FG +  V +   +
Sbjct: 387 ALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEG-RYWYNAMKQEFGIEAGVEHYGCM 445

Query: 392 IDMYAKCGSLESAREVFERMR-RRNVISWTSMINAFAIH 429
           +D+  + G L+ A  + + M+ + +   W ++++A  IH
Sbjct: 446 VDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIH 484



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 17/233 (7%)

Query: 101 ALKVFLKMLN--EGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158
           A+ ++ KMLN   G+  +  +   +L A A A  +  G ++H    ++G   + +V T +
Sbjct: 284 AIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSI 343

Query: 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218
           V MY  CG++  A   F K+  ++I+ WS MI GY  +G   E L +F EMK S + P+ 
Sbjct: 344 VDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNY 403

Query: 219 MVLSKILSACSRAGNLS-----YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAK 273
           +    +L+ACS AG L      Y     EF I+  V         ++ +    GC+D A 
Sbjct: 404 ITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGV----EHYGCMVDLLGRAGCLDEAY 459

Query: 274 GLFDKVLLK-NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGY 325
            L  ++ +K +  +  A++S       VE A +   ++ E D     A  SGY
Sbjct: 460 SLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELD-----ASNSGY 507


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/587 (37%), Positives = 333/587 (56%), Gaps = 2/587 (0%)

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           +VH    K G    P     LV  Y     + DAR  FD    RD+  +S ++     + 
Sbjct: 22  RVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSS 81

Query: 198 LFDEVLNLFEEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256
             + VL L   M   + + PD  VL+ + SA  R  +L  G  +H     +  + D  ++
Sbjct: 82  DPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVK 141

Query: 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI 316
           S+LI MY  CG    A+ +FD + +KN VV TA++SGY+  G   +A  +F  M    L 
Sbjct: 142 SSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLF 201

Query: 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMK-PDKVTMLSVISACAHLGVLDQAQRIHLY 375
            W+A+ISG+ +  +   A+ LF EM+   ++  D   + +VI   A L  L   +++H +
Sbjct: 202 TWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGF 261

Query: 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435
           + +  F   + V NA++DMY+KC  + SAREVFE +  R+VISWT+++   A HG A   
Sbjct: 262 VMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEV 321

Query: 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495
              +N+M    + PN VTF+G++YACSHAGLV +GR++F SM  EY + P  +HY C +D
Sbjct: 322 FALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLD 381

Query: 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555
           L  R+  L EA +L+ TMP+ P+   WG+L++AC+ H + ++    A  LL+L P     
Sbjct: 382 LLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRPKDPST 441

Query: 556 LVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQI 615
            +LLSN+YA + +W  V ++RK M E  I K    S +E   E   F   +      ++I
Sbjct: 442 YILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLDVGEEI 501

Query: 616 YEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRI 675
              L E++SE++  GYVPD  S + DLE+ EK + +  HSE+LA+ +G++ S   S IR+
Sbjct: 502 TCFLEELVSEMRKRGYVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPPGSVIRV 561

Query: 676 VKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           VKNLRVC DCH  +K +S +  R+I++RD +RFHH++DG CSC ++W
Sbjct: 562 VKNLRVCGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 215/446 (48%), Gaps = 28/446 (6%)

Query: 28  MKQTHAQILKLSHSH-HSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSN 86
           +++ HA++LK   +   S  +LL+     S  LP         A   F   P     + +
Sbjct: 20  VRRVHARLLKEGLADLPSAPALLVSAYARSCLLPD--------ARRAFDDAPRRDLHLYS 71

Query: 87  KFIRAISWSHRPKHALKVFLKML-NEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTK 145
             + A+S S  P+  L +  +ML ++ L  D F    +  A  R   L  G Q+H     
Sbjct: 72  ALLAAVSHSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAA 131

Query: 146 LGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL 205
             + +D  V++ L+ MY  CG   DAR +FD +  ++ V W+ +I GY  NG   E L+L
Sbjct: 132 SPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDL 191

Query: 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI---IDNNVALDAHLQSTLITM 262
           F+ M    +       + ++S   +AGN  Y  A+  F+    D+    DA + +T+I  
Sbjct: 192 FQSMPAHGL----FTWTALISGFVKAGN--YTGAMGLFVEMRRDDIRIHDAFVLATVIGG 245

Query: 263 YANCGCMDMAKGLFDKVL----LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW 318
            A+   + + + L   V+    L +++V  A+V  YS+   +  AR +F+ +  +D+I W
Sbjct: 246 AADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISW 305

Query: 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK 378
           + ++ G A++   +E   L+N M + GMKP++VT + +I AC+H G++ + +++   + K
Sbjct: 306 TTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSM-K 364

Query: 379 NAFGGDLRVNN--AIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINAFAIHGDARNA 435
             +G    V +    +D+ ++ G L  A ++   M    +  +W ++++A   H D +  
Sbjct: 365 REYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMC 424

Query: 436 L-IFFNKMKDESIDPNGVTFIGVLYA 460
           L +  N ++    DP+    +  +YA
Sbjct: 425 LRVADNLLELRPKDPSTYILLSNVYA 450


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/645 (33%), Positives = 347/645 (53%), Gaps = 43/645 (6%)

Query: 121 PPILKAIARAEGLLEG----MQVHGLGTKL---GFGSDPFVQTGLVGMYGACGKILDARL 173
           PP     A    L+ G    +Q+H +  ++      S   + T L+        I  +  
Sbjct: 75  PPTTPTEAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLA 134

Query: 174 MFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233
           +F+    +++  ++ +I G   N  F   +  F  M  S ++PD +    +L + +   +
Sbjct: 135 VFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFS 194

Query: 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYAN---------------------------- 265
              G A+H  I+   + LD+ ++ +L+ MY                              
Sbjct: 195 TELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWN 254

Query: 266 --------CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317
                    G M  A  LF  +  K  V  + ++ G+++ G ++ A  +FDQM EK+++ 
Sbjct: 255 VLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVS 314

Query: 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377
           W+ M+ G++ N   ++AL +F++M   G++P+  T++S +SACA +G L+   RIH YI 
Sbjct: 315 WTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIK 374

Query: 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALI 437
            N       +  A++DMYAKCG++ESA EVF    ++++ +WT MI  +AIHG +  A+ 
Sbjct: 375 DNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIA 434

Query: 438 FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497
            F +M    I P+ V F+ +L AC H+G VD G   F SM  +Y I P  +HY  +VD+ 
Sbjct: 435 CFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDML 494

Query: 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557
           GR+  L+EAL  +E MP  P+ VIWG+L  ACR H + ++A+FA  +LL+L+P H G  +
Sbjct: 495 GRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYI 554

Query: 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYE 617
            LSN YA   +W+D   +R  M+ RG+ K    S IE+  +V+ F++ D  HK +  I  
Sbjct: 555 FLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAICL 614

Query: 618 KLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVK 677
           KL E+++     GY+P     L ++E EEK +V+  H EKLAL + LI +     IRIVK
Sbjct: 615 KLEEIMAGAVKQGYIPGTEWVLHNMEQEEKEDVLGSHGEKLALAFALICTSPGMTIRIVK 674

Query: 678 NLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           NL+VC DCH+ +K  SK+  REI++RD  RFHH+KDG CSC+D+W
Sbjct: 675 NLQVCGDCHSLMKYASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 132/538 (24%), Positives = 220/538 (40%), Gaps = 122/538 (22%)

Query: 2   STLSQPTKPLTLPTS----TAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSF 57
           S+LS    P T PT     + I    ++  + Q HAQI+     + S +SL+   L++S 
Sbjct: 67  SSLSALFIPPTTPTEAHFISLIHGSKTILQLHQIHAQIII---HNLSSSSLITTQLISSS 123

Query: 58  SLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117
           SL      S+ ++L++F+          N  IR ++ +    +A+  F  ML  G+  DR
Sbjct: 124 SLR----KSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDR 179

Query: 118 FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY--------------- 162
            ++P +LK++A       GM +H +  + G   D FV+  LV MY               
Sbjct: 180 LTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDE 239

Query: 163 -------------------GAC--GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201
                              G C  G +  A  +F  M  ++ V WS +IDG+ +NG  D 
Sbjct: 240 SPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDR 299

Query: 202 VLNLFEEMKMSN-------------------------------VEPDEMVLSKILSACSR 230
            + LF++M   N                               V P+   +   LSAC++
Sbjct: 300 AMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAK 359

Query: 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAM 290
            G L  G  +H++I DN + L   L + L+ MYA CG ++ A  +F +   K++   T M
Sbjct: 360 IGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVM 419

Query: 291 VSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK 350
           + G++  G                               H ++A+  F +M   G+KPD+
Sbjct: 420 IWGWAIHG-------------------------------HSEQAIACFKQMMFAGIKPDE 448

Query: 351 VTMLSVISACAHLGVLD------QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404
           V  L++++AC H G +D       + R+   I+ +     ++    I+DM  + G L+ A
Sbjct: 449 VVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPS-----MKHYTLIVDMLGRSGQLKEA 503

Query: 405 REVFERM-RRRNVISWTSMINAFAIHGDARNALIFFNK-MKDESIDPNGVTFIGVLYA 460
               ERM    + + W ++  A   H   + A    NK +K E        F+   YA
Sbjct: 504 LRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYA 561



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 133/315 (42%), Gaps = 44/315 (13%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           A+ +F Q+P          +   S +   + AL +F KML EG+  + F+    L A A+
Sbjct: 300 AMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAK 359

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
             GL  G+++H      G      + T LV MY  CG I  A  +F +   + I  W+VM
Sbjct: 360 IGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVM 419

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           I G+  +G  ++ +  F++M  + ++PDE+V   +L+AC  +G +               
Sbjct: 420 IWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQV--------------- 464

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVS-----TAMVSGYSRAGQVEDAR 304
                               D+    FD + L   +       T +V    R+GQ+++A 
Sbjct: 465 --------------------DIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEAL 504

Query: 305 LIFDQM-VEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS-ACAH 362
              ++M +  D + W A+    A   H +  +  F   ++  ++P        +S A A 
Sbjct: 505 RFIERMPMNPDFVIWGALFC--ACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAA 562

Query: 363 LGVLDQAQRIHLYID 377
           LG  + A+R+ + + 
Sbjct: 563 LGQWEDAERVRVLMQ 577


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 245/746 (32%), Positives = 385/746 (51%), Gaps = 114/746 (15%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           AL +F ++    + V N  I+  +       AL+++ +M+  G+  D F++P ++K++  
Sbjct: 79  ALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADSFTYPFVIKSVTG 138

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
              L EG ++H +  KL F SD +V   L+ +Y   G   DA  +F++M  RDIV W+ M
Sbjct: 139 ISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSM 198

Query: 190 IDGYF--QNGLFDEVLNLFEEMKMSNVEPDE----------------------------- 218
           I GY   ++G     L LF+EM     +PD                              
Sbjct: 199 ISGYLALEDGF--RSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAVRS 256

Query: 219 -------MVLSKILSACSRAGNLSYGEAVHEFIIDNNVA---------------LDAHL- 255
                  MV++ IL   S+ G +SY E + + II  N+                 DA L 
Sbjct: 257 RIETGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFLC 316

Query: 256 ------QS-------TLITMYANCGCMD--------MAKGLFDKVLLKNLVVSTAMVSGY 294
                 Q+       TLI +   C  ++        M +G      L ++V+ TA++  Y
Sbjct: 317 FQKMSEQNGLQPDVITLINLLPACAILEGRTIHGYAMRRGF-----LPHIVLDTALIDMY 371

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
              GQ++ A +IFD++ EK+LI W+++I+ Y +N     AL+LF ++    + PD  T+ 
Sbjct: 372 GEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIA 431

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           S++ A A    L + ++IH YI K+ +G +  + N+++ MYA CG LE AR+ F  +  +
Sbjct: 432 SILPAYAESLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLK 491

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           +V+SW S+I A+A+HG  R ++  F++M    +DPN  TF  +L ACS +G+VDEG E F
Sbjct: 492 DVVSWNSIIMAYAVHGFGRISVCLFSEMIASKVDPNKSTFASLLAACSISGMVDEGWEYF 551

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
            SM  EY I P  EHYG M+DL GR      A   +  MPF P   IWGSL+ A R H +
Sbjct: 552 ESMKREYGIDPGIEHYGYMLDLIGRTGNFSSAKRFIREMPFLPTARIWGSLLNASRNHND 611

Query: 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 594
           I +AEFAA+Q+ +++ D+ G  VLL N+YA+ +RW+DV  ++  M+ +GI +  + S +E
Sbjct: 612 ITVAEFAAEQIFKMEHDNTGCYVLLLNMYAEARRWEDVNRIKLLMESKGISRTSSRSTVE 671

Query: 595 MNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEE-------- 646
             ++ +     DRSH +T++IYE              V DI S ++  E+EE        
Sbjct: 672 AKSKTHVLTNGDRSHVETNKIYE--------------VLDIVSRMIGEEEEEDSYVHYVS 717

Query: 647 --KREVIL--------WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVY 696
             +RE +          HS +LA C+GLIS++    + +  N R+C  CH F++  SK+ 
Sbjct: 718 KLRRETLAKSRSNSPRRHSVRLATCFGLISTETGRTVTVRNNTRICRKCHEFLEKASKMT 777

Query: 697 AREIVIRDRTRFHHYKDGVCSCKDYW 722
            REIV+ D   FHH+ +G CSC +YW
Sbjct: 778 RREIVVGDSKIFHHFSNGRCSCGNYW 803



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 196/400 (49%), Gaps = 44/400 (11%)

Query: 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM 209
           +DP +   L G +   G + DA  +FD+M+  D   W+VMI G+   GL+ E L L+  M
Sbjct: 59  NDPALTRALRG-FADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRM 117

Query: 210 KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269
             S V+ D      ++ + +   +L  G+ +H  +I      D ++ ++LI++Y   GC 
Sbjct: 118 VFSGVKADSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCS 177

Query: 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329
             A+ +F+++  +++V   +M+SGY                         A+  G+    
Sbjct: 178 WDAEKVFEEMPERDIVSWNSMISGY------------------------LALEDGF---- 209

Query: 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF-GGDLRVN 388
               +L LF EM   G KPD+ + +S + AC+H+   +  + +H +  ++    GD+ V 
Sbjct: 210 ---RSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGDVMVM 266

Query: 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDES-I 447
            +I+DMY+K G +  A  +F+ + +RN+++W  +I  +A +    +A + F KM +++ +
Sbjct: 267 TSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQKMSEQNGL 326

Query: 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507
            P+ +T I +L AC+    + EGR I           P       ++D++G    L+ A 
Sbjct: 327 QPDVITLINLLPACA----ILEGRTIHGYAMRR-GFLPHIVLDTALIDMYGEWGQLKSA- 380

Query: 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547
           E++       N++ W S++AA   +G+     ++A +L Q
Sbjct: 381 EVIFDRIAEKNLISWNSIIAAYVQNGK----NYSALELFQ 416



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 198/430 (46%), Gaps = 49/430 (11%)

Query: 9   KPLTLPTSTAISSCS---SLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPS 65
           KP    T +A+ +CS   S    K+ H       H+  S+      +++TS     +   
Sbjct: 224 KPDRFSTMSALGACSHVYSPNMGKELHC------HAVRSRIETGDVMVMTSILDMYSKYG 277

Query: 66  SLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPIL 124
            + YA  IF  I        N  I   + + R   A   F KM  + GL  D  +   +L
Sbjct: 278 EVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITLINLL 337

Query: 125 KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIV 184
            A A    +LEG  +HG   + GF     + T L+ MYG  G++  A ++FD+++ ++++
Sbjct: 338 PACA----ILEGRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLI 393

Query: 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFI 244
            W+ +I  Y QNG     L LF+++  S++ PD   ++ IL A + + +LS G  +H +I
Sbjct: 394 SWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHAYI 453

Query: 245 IDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304
           + +    +  + ++L+ MYA CG ++ A+  F+ VLLK                      
Sbjct: 454 VKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLK---------------------- 491

Query: 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364
                    D++ W+++I  YA +   + ++ LF+EM    + P+K T  S+++AC+  G
Sbjct: 492 ---------DVVSWNSIIMAYAVHGFGRISVCLFSEMIASKVDPNKSTFASLLAACSISG 542

Query: 365 VLDQAQRIHLYIDKNAFGGDLRVNN--AIIDMYAKCGSLESAREVFERMRRRNVIS-WTS 421
           ++D+    +    K  +G D  + +   ++D+  + G+  SA+     M        W S
Sbjct: 543 MVDEGWE-YFESMKREYGIDPGIEHYGYMLDLIGRTGNFSSAKRFIREMPFLPTARIWGS 601

Query: 422 MINAFAIHGD 431
           ++NA   H D
Sbjct: 602 LLNASRNHND 611


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 239/694 (34%), Positives = 374/694 (53%), Gaps = 43/694 (6%)

Query: 32  HAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRA 91
           H+ I+KL +     N+ +   L+ ++S+  +  S    A S+F  I      V    +  
Sbjct: 169 HSPIVKLGYD---SNAFVGAALINAYSVCGSVDS----ARSVFEGILCKDIVVWAGIVSC 221

Query: 92  ISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSD 151
              +   + +L++  +M  +G   + ++F   LKA            VHG   K  +  D
Sbjct: 222 YVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELD 281

Query: 152 PFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM 211
           P V  GL+ +Y   G + DA  +F++M   D+VPWS MI  + QNG  ++ +++F  M+ 
Sbjct: 282 PRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMRE 341

Query: 212 SNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271
             V P+E  LS IL+ C+       GE +H  ++     LD ++ + LI +YA C  MD 
Sbjct: 342 GFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDT 401

Query: 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP 331
           A  LF ++  KN+V                                W+ +I GY      
Sbjct: 402 AVKLFAELSSKNVV-------------------------------SWNTVIVGYENLGEG 430

Query: 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI 391
            +AL +F E     +   +VT  S + ACA L  ++   ++H    K      + V+N++
Sbjct: 431 GKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSL 490

Query: 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451
           IDMYAKCG ++ A+ VF  M   +V SW ++I+ ++ HG  R AL  F+ MK     PNG
Sbjct: 491 IDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNG 550

Query: 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511
           +TF+GVL  CS+AGL+D+G++ F SM  ++ I P  EHY CMV LFGR+  L +A+ L+E
Sbjct: 551 LTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIE 610

Query: 512 TMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571
            +P+ P+V+IW ++++A       E A  +A+++L+++P  +   VLLSN+YA  K+W +
Sbjct: 611 GIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGAKQWAN 670

Query: 572 VGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGY 631
           V  +RKSMKE+G+ KE   S IE   +V+ F      H     I   L  +  +   AGY
Sbjct: 671 VASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDHPDMKLINGMLEWLNMKATRAGY 730

Query: 632 VPDIHSALVDLEDEEKREVILWHSEKLALCYGLI---SSKKDSCIRIVKNLRVCEDCHNF 688
           VPD ++ L+D++DEEK + +  HSE+LAL YGL+   SS+    I I+KNLR+C DCH+ 
Sbjct: 731 VPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNR--ILIMKNLRICSDCHSA 788

Query: 689 IKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +K++S +  R++VIRD  RFHH+  GVCSC D+W
Sbjct: 789 MKVISSIVQRDLVIRDMNRFHHFHAGVCSCDDHW 822



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/464 (22%), Positives = 211/464 (45%), Gaps = 37/464 (7%)

Query: 70  ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR 129
           AL++F ++P      +N     ++  +  +  + ++ ++  EG  ++   F   LK    
Sbjct: 103 ALNLFDEMPER----NNVSYVTLTQGYACQDPVGLYSRLHREGHELNPHVFTSFLKLFVS 158

Query: 130 AEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVM 189
            +       +H    KLG+ S+ FV   L+  Y  CG +  AR +F+ +  +DIV W+ +
Sbjct: 159 LDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGI 218

Query: 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV 249
           +  Y +NG F++ L L   M M    P+       L A    G   + ++VH  I+    
Sbjct: 219 VSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCY 278

Query: 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309
            LD  +   L+ +                               Y++ G + DA  +F++
Sbjct: 279 ELDPRVGVGLLQL-------------------------------YTQLGDMSDAFKVFNE 307

Query: 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369
           M + D++ WS MI+ + +N    +A+ +F  M+   + P++ T+ S+++ CA        
Sbjct: 308 MPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLG 367

Query: 370 QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           +++H  + K  F  D+ V+NA+ID+YAKC  +++A ++F  +  +NV+SW ++I  +   
Sbjct: 368 EQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENL 427

Query: 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489
           G+   AL  F +     +    VTF   L AC+    ++ G ++   +  + N   +   
Sbjct: 428 GEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHG-LAIKTNNAKRVAV 486

Query: 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533
              ++D++ +   ++ A  +   M    +V  W +L++    HG
Sbjct: 487 SNSLIDMYAKCGDIKVAQTVFNEME-TIDVASWNALISGYSTHG 529



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 182/401 (45%), Gaps = 44/401 (10%)

Query: 29  KQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKF 88
           K  H QILK  +    +  + L  L T           +  A  +F+++P       +  
Sbjct: 267 KSVHGQILKTCYELDPRVGVGLLQLYTQLG-------DMSDAFKVFNEMPKNDVVPWSFM 319

Query: 89  IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK--AIARAEGLLEGMQVHGLGTKL 146
           I     +     A+ +F++M    +  + F+   IL   AI +  GL  G Q+HGL  K+
Sbjct: 320 IARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGL--GEQLHGLVVKV 377

Query: 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLF 206
           GF  D +V   L+ +Y  C K+  A  +F ++S +++V W+ +I GY   G   + LN+F
Sbjct: 378 GFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMF 437

Query: 207 EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266
            E   + V   E+  S  L AC+   ++  G  VH   I  N A    + ++LI MYA C
Sbjct: 438 REALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKC 497

Query: 267 GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYA 326
           G + +A+ +F+++   ++    A++SGYS  G                            
Sbjct: 498 GDIKVAQTVFNEMETIDVASWNALISGYSTHGL--------------------------- 530

Query: 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-IHLYIDKNAFGGDL 385
                ++AL++F+ M+    KP+ +T L V+S C++ G++DQ Q      I  +     L
Sbjct: 531 ----GRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCL 586

Query: 386 RVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINA 425
                ++ ++ + G L+ A  + E +    +V+ W +M++A
Sbjct: 587 EHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSA 627



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/420 (21%), Positives = 169/420 (40%), Gaps = 37/420 (8%)

Query: 115 IDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLM 174
           +D  ++  +L+   R    +    +H    K G   D F    L+  Y   G   DA  +
Sbjct: 47  LDSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNL 106

Query: 175 FDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234
           FD+M  R+ V +  +  GY       + + L+  +     E +  V +  L         
Sbjct: 107 FDEMPERNNVSYVTLTQGY----ACQDPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKA 162

Query: 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY 294
                +H  I+      +A + + LI  Y+ CG +D A+ +F+ +L K++VV   +VS Y
Sbjct: 163 EICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCY 222

Query: 295 SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354
              G  ED                               +L+L + M + G  P+  T  
Sbjct: 223 VENGCFED-------------------------------SLQLLSRMGMDGFMPNNYTFD 251

Query: 355 SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR 414
           + + A   LG    A+ +H  I K  +  D RV   ++ +Y + G +  A +VF  M + 
Sbjct: 252 TALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKN 311

Query: 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474
           +V+ W+ MI  F  +G    A+  F +M++  + PN  T   +L  C+       G ++ 
Sbjct: 312 DVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLH 371

Query: 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGE 534
             +  +            ++D++ +   +  A++L   +  + NVV W +++      GE
Sbjct: 372 G-LVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELS-SKNVVSWNTVIVGYENLGE 429


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/605 (38%), Positives = 335/605 (55%), Gaps = 52/605 (8%)

Query: 138 QVHGLGTKLGFGSDP---FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYF 194
           Q+H    +  +  +P   F+   ++ +  +   +  A  +FD +       W+ +I    
Sbjct: 57  QLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACA 116

Query: 195 QN-GLFDEVLNLFEEM-KMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD 252
            +    +E   L+ +M +     PD+     +L AC+     S G+ VH  I+ +    D
Sbjct: 117 HDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGD 176

Query: 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312
            ++ + LI +Y +CGC+D+A                               R +FD+M E
Sbjct: 177 VYVNNGLIHLYGSCGCLDLA-------------------------------RKVFDEMPE 205

Query: 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRI 372
           + L+ W++MI           AL+LF EMQ    +PD  TM SV+SACA LG L      
Sbjct: 206 RSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWA 264

Query: 373 HLYIDKNA---FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH 429
           H ++ +        D+ V N++I+MY KCGSL  A +VF+ M++R++ SW +MI  FA H
Sbjct: 265 HAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATH 324

Query: 430 GDARNALIFFNKMKD--ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487
           G A  A+ FF++M D  E++ PN VTF+G+L AC+H G V++GR+ F  M  +Y I P  
Sbjct: 325 GRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPAL 384

Query: 488 EHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLM-AACRVHGEIELAEFAAKQLL 546
           EHYGC+VDL  RA  + EA+++V +MP  P+ VIW SL+ A C+    +EL+E  A+ ++
Sbjct: 385 EHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNII 444

Query: 547 QLDPDHD-------GALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599
               D++       GA VLLS +YA   RW DVG +RK M E GI KE  CS IE+N   
Sbjct: 445 GTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGIS 504

Query: 600 YEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSA-LVDLEDEEKREVIL-WHSEK 657
           +EF   D SH QT QIY++L  +   L+  GY+PD   A LVD  ++  +E  L  HSE+
Sbjct: 505 HEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSER 564

Query: 658 LALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCS 717
           LA+ +GLI+    + IRI KNLRVC DCH   KL+SKV+  EI++RDR RFHH+KDG CS
Sbjct: 565 LAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCS 624

Query: 718 CKDYW 722
           C DYW
Sbjct: 625 CLDYW 629



 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 130/413 (31%), Positives = 209/413 (50%), Gaps = 43/413 (10%)

Query: 21  SCSSLTHMKQTHAQILKLSHSHHSQNSLLL-KLLLTSFSLPTTTPSSLYYALSIFSQIPA 79
           +CS ++ +KQ HA  L+ ++        L  K+L  S S      S + YA  +F  I  
Sbjct: 48  TCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSF-----SDVNYAFRVFDSIEN 102

Query: 80  PPSRVSNKFIRAISWS-HRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLEGM 137
             S + N  IRA +    R + A  ++ KML  G  + D+ +FP +LKA A   G  EG 
Sbjct: 103 HSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGK 162

Query: 138 QVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNG 197
           QVH    K GFG D +V  GL+ +YG+CG +  AR +FD+M  R +V W+ MID   + G
Sbjct: 163 QVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFG 222

Query: 198 LFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFII---DNNVALDAH 254
            +D  L LF EM+ S  EPD   +  +LSAC+  G+LS G   H F++   D +VA+D  
Sbjct: 223 EYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 281

Query: 255 LQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314
           ++++LI MY  CG + MA+ +F  +  ++L    AM+ G++  G+ E+A   FD+MV+K 
Sbjct: 282 VKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDK- 340

Query: 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA-QRIH 373
                       EN                 ++P+ VT + ++ AC H G +++  Q   
Sbjct: 341 -----------REN-----------------VRPNSVTFVGLLIACNHRGFVNKGRQYFD 372

Query: 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM-RRRNVISWTSMINA 425
           + +        L     I+D+ A+ G +  A ++   M  + + + W S+++A
Sbjct: 373 MMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDA 425


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/717 (32%), Positives = 377/717 (52%), Gaps = 43/717 (5%)

Query: 10  PLTLPTSTAISSCSSLTHMKQT---HAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSS 66
           P +   S+ + +  +L  +KQ    H   LK   +     +  L  +   F  PT     
Sbjct: 205 PDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTD---- 260

Query: 67  LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKA 126
              A  +F ++    S   N  I         + ++++FL+ L++    D  +   +L+A
Sbjct: 261 ---ARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRA 316

Query: 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPW 186
                 L     ++    K GF  +  V+  L+ +Y  CG ++ AR +F+ M  +D V W
Sbjct: 317 CGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSW 376

Query: 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246
           + +I GY Q+G   E + LF+ M +   + D +    ++S  +R  +L +G+ +H   I 
Sbjct: 377 NSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIK 436

Query: 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLI 306
           + + +D                               L VS A++  Y++ G+V D+  I
Sbjct: 437 SGICID-------------------------------LSVSNALIDMYAKCGEVGDSLKI 465

Query: 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL 366
           F  M   D + W+ +IS           L++  +M+   + PD  T L  +  CA L   
Sbjct: 466 FSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAK 525

Query: 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAF 426
              + IH  + +  +  +L++ NA+I+MY+KCG LE++  VFERM RR+V++WT MI A+
Sbjct: 526 RLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAY 585

Query: 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK 486
            ++G+   AL  F  M+   I P+ V FI ++YACSH+GLVDEG   F  M   Y I P 
Sbjct: 586 GMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPM 645

Query: 487 YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546
            EHY C+VDL  R+  + +A E ++ MP  P+  IW S++ ACR  G++E AE  +++++
Sbjct: 646 IEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRII 705

Query: 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTAD 606
           +L+PD  G  +L SN YA  ++W  V  +RKS+K++ I K    S IE+   V+ F + D
Sbjct: 706 ELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGD 765

Query: 607 RSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDL-EDEEKREVILWHSEKLALCYGLI 665
            S  Q++ IY+ L  + S +   GY+PD      +L E+EEKR +I  HSE+LA+ +GL+
Sbjct: 766 DSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLL 825

Query: 666 SSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 722
           +++  + ++++KNLRVC DCH   KL+SK+  REI++RD  RFH +KDG CSCKD W
Sbjct: 826 NTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 164/661 (24%), Positives = 299/661 (45%), Gaps = 79/661 (11%)

Query: 16  STAISSCSSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS 75
           S A+SS S+L  +++ HA ++ L        S  L    + F  P ++       LS+F 
Sbjct: 11  SRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASS-------LSVFR 63

Query: 76  QI-PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLL 134
           ++ PA    + N  IRA S +     AL+ + K+    ++ D+++FP ++KA A   GL 
Sbjct: 64  RVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACA---GLF 120

Query: 135 E---GMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMID 191
           +   G  V+     +GF SD FV   LV MY   G +  AR +FD+M  RD+V W+ +I 
Sbjct: 121 DAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLIS 180

Query: 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVAL 251
           GY  +G ++E L ++ E+K S + PD   +S +L A      +  G+ +H F + + V  
Sbjct: 181 GYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNS 240

Query: 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311
              + + L+ MY        A+ +FD++ +++ V    M+ GY +   VE++  +F + +
Sbjct: 241 VVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENL 300

Query: 312 EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR 371
           ++                                 KPD +T+ SV+ AC HL  L  A+ 
Sbjct: 301 DQ--------------------------------FKPDLLTVSSVLRACGHLRDLSLAKY 328

Query: 372 IHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD 431
           I+ Y+ K  F  +  V N +ID+YAKCG + +AR+VF  M  ++ +SW S+I+ +   GD
Sbjct: 329 IYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGD 388

Query: 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491
              A+  F  M       + +T++ ++   +    +  G+ + ++      I        
Sbjct: 389 LMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKS-GICIDLSVSN 447

Query: 492 CMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551
            ++D++ +   + ++L++  +M    + V W ++++AC   G+         Q+ + +  
Sbjct: 448 ALIDMYAKCGEVGDSLKIFSSMG-TGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVV 506

Query: 552 HDGALVLLSNIYAKDKRWQDVG-ELRKSMKERGILKE-----------RACSRIEMNNEV 599
            D A  L++         + +G E+   +   G   E             C  +E ++ V
Sbjct: 507 PDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRV 566

Query: 600 YEFLTADRSHKQTDQIY--------EKLNEVISELKPAGYVPD-----------IHSALV 640
           +E ++       T  IY        EK  E  ++++ +G VPD            HS LV
Sbjct: 567 FERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLV 626

Query: 641 D 641
           D
Sbjct: 627 D 627


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.136    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,886,075,404
Number of Sequences: 23463169
Number of extensions: 443945049
Number of successful extensions: 1319760
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9929
Number of HSP's successfully gapped in prelim test: 2513
Number of HSP's that attempted gapping in prelim test: 1113409
Number of HSP's gapped (non-prelim): 61467
length of query: 722
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 572
effective length of database: 8,839,720,017
effective search space: 5056319849724
effective search space used: 5056319849724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 81 (35.8 bits)