Query 004938
Match_columns 722
No_of_seqs 853 out of 5093
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 15:23:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 9E-134 2E-138 1163.6 80.6 705 6-720 80-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 6E-124 1E-128 1056.1 71.7 613 79-722 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.5E-72 3.3E-77 652.5 61.0 671 11-717 50-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 5.7E-66 1.2E-70 585.0 59.4 507 45-589 368-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.3E-64 7.1E-69 569.4 50.4 438 7-485 118-561 (697)
6 PLN03218 maturation of RBCL 1; 100.0 4.2E-63 9E-68 561.7 57.6 502 12-549 370-910 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-31 4.2E-36 316.0 61.3 543 23-584 309-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.7E-31 5.8E-36 314.8 62.4 541 23-582 275-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1.8E-33 3.9E-38 234.1 8.5 106 589-712 2-116 (116)
10 PRK11447 cellulose synthase su 100.0 2.5E-23 5.5E-28 247.6 56.2 540 23-583 42-701 (1157)
11 PRK11447 cellulose synthase su 99.9 1.6E-21 3.4E-26 232.3 60.0 539 23-581 126-739 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 8.6E-20 1.9E-24 207.5 53.4 497 65-583 58-707 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.7E-21 3.6E-26 195.9 34.2 384 184-579 117-516 (966)
14 PRK09782 bacteriophage N4 rece 99.9 1.3E-18 2.7E-23 198.0 54.4 482 85-583 45-673 (987)
15 KOG4626 O-linked N-acetylgluco 99.9 1.9E-19 4.1E-24 181.3 33.0 417 156-582 52-485 (966)
16 TIGR00990 3a0801s09 mitochondr 99.9 4.8E-18 1E-22 190.2 44.9 418 155-582 130-571 (615)
17 PRK11788 tetratricopeptide rep 99.8 1.5E-18 3.2E-23 184.4 29.0 268 317-589 71-354 (389)
18 PRK11788 tetratricopeptide rep 99.8 4.5E-18 9.8E-23 180.7 32.1 298 162-487 45-353 (389)
19 PRK10049 pgaA outer membrane p 99.8 1.2E-16 2.5E-21 182.3 42.3 400 151-583 14-457 (765)
20 PRK15174 Vi polysaccharide exp 99.8 1.6E-16 3.4E-21 177.3 41.4 354 164-553 17-386 (656)
21 PRK10049 pgaA outer membrane p 99.8 1.6E-16 3.5E-21 181.1 42.0 415 116-556 14-464 (765)
22 KOG2002 TPR-containing nuclear 99.8 9.7E-16 2.1E-20 163.2 43.8 541 25-583 146-746 (1018)
23 TIGR00990 3a0801s09 mitochondr 99.8 1E-15 2.2E-20 171.5 45.3 435 122-581 132-596 (615)
24 PRK15174 Vi polysaccharide exp 99.8 6.9E-16 1.5E-20 172.2 37.9 321 223-583 47-382 (656)
25 PRK14574 hmsH outer membrane p 99.8 5.7E-15 1.2E-19 165.0 43.2 421 127-553 44-518 (822)
26 KOG2002 TPR-containing nuclear 99.8 3.7E-14 8E-19 151.4 45.3 552 17-585 167-801 (1018)
27 PRK14574 hmsH outer membrane p 99.8 2.2E-14 4.8E-19 160.3 45.9 412 92-513 44-510 (822)
28 KOG0495 HAT repeat protein [RN 99.7 2.6E-12 5.6E-17 131.4 48.4 498 81-599 379-895 (913)
29 KOG4422 Uncharacterized conser 99.7 2.1E-13 4.6E-18 132.5 38.7 420 82-548 116-590 (625)
30 KOG2003 TPR repeat-containing 99.7 1.1E-14 2.4E-19 141.9 26.3 444 119-569 200-710 (840)
31 KOG4422 Uncharacterized conser 99.6 1.6E-12 3.6E-17 126.4 34.1 364 81-513 206-587 (625)
32 KOG0495 HAT repeat protein [RN 99.6 2.2E-10 4.7E-15 117.6 48.5 492 44-560 377-892 (913)
33 KOG1915 Cell cycle control pro 99.6 2.2E-11 4.7E-16 120.2 35.0 432 153-624 74-538 (677)
34 PF13429 TPR_15: Tetratricopep 99.6 5.3E-15 1.2E-19 148.8 10.3 257 321-581 14-276 (280)
35 KOG2076 RNA polymerase III tra 99.6 3.7E-10 7.9E-15 120.6 46.0 549 23-583 153-850 (895)
36 KOG2076 RNA polymerase III tra 99.6 7.7E-12 1.7E-16 133.1 31.4 361 219-592 140-522 (895)
37 KOG1915 Cell cycle control pro 99.5 4.6E-10 1E-14 111.0 40.9 491 82-580 73-623 (677)
38 KOG0547 Translocase of outer m 99.5 2.1E-11 4.7E-16 120.9 31.3 214 362-581 338-565 (606)
39 KOG2003 TPR repeat-containing 99.5 2.3E-11 4.9E-16 119.2 31.0 425 152-582 201-689 (840)
40 KOG4318 Bicoid mRNA stability 99.5 2.7E-10 5.8E-15 120.9 38.7 85 181-268 202-286 (1088)
41 KOG1155 Anaphase-promoting com 99.5 4.9E-11 1.1E-15 117.7 30.5 329 248-581 159-494 (559)
42 KOG1155 Anaphase-promoting com 99.5 2.7E-10 5.9E-15 112.6 34.0 355 147-510 159-530 (559)
43 KOG1126 DNA-binding cell divis 99.5 4.2E-12 9.2E-17 131.1 21.7 278 298-583 333-621 (638)
44 KOG1173 Anaphase-promoting com 99.5 5E-10 1.1E-14 113.6 33.9 263 314-581 243-517 (611)
45 PRK10747 putative protoheme IX 99.5 1.3E-10 2.8E-15 122.5 31.5 245 326-580 129-388 (398)
46 KOG2047 mRNA splicing factor [ 99.4 6.8E-09 1.5E-13 106.7 41.2 496 70-581 94-686 (835)
47 PRK10747 putative protoheme IX 99.4 1.5E-10 3.3E-15 122.0 30.7 202 314-549 186-391 (398)
48 KOG1126 DNA-binding cell divis 99.4 1.7E-11 3.6E-16 126.8 22.0 244 330-582 334-586 (638)
49 KOG4318 Bicoid mRNA stability 99.4 3.8E-10 8.3E-15 119.8 31.8 459 104-586 12-598 (1088)
50 TIGR00540 hemY_coli hemY prote 99.4 4.1E-10 8.9E-15 119.4 32.6 142 402-547 246-398 (409)
51 PF13429 TPR_15: Tetratricopep 99.4 1.2E-12 2.7E-17 131.6 11.0 226 314-547 43-276 (280)
52 TIGR00540 hemY_coli hemY prote 99.4 6.2E-10 1.3E-14 118.0 29.8 285 196-513 97-396 (409)
53 KOG0547 Translocase of outer m 99.4 1.1E-08 2.4E-13 102.1 34.9 413 85-549 118-567 (606)
54 KOG4162 Predicted calmodulin-b 99.3 1.9E-08 4.1E-13 106.0 34.7 422 147-583 318-784 (799)
55 TIGR02521 type_IV_pilW type IV 99.3 5.8E-10 1.2E-14 109.0 22.9 196 385-581 31-231 (234)
56 COG3071 HemY Uncharacterized e 99.3 1.3E-08 2.9E-13 99.5 30.5 289 196-547 97-389 (400)
57 PF13041 PPR_2: PPR repeat fam 99.3 9.6E-12 2.1E-16 87.7 6.1 50 181-230 1-50 (50)
58 COG2956 Predicted N-acetylgluc 99.3 6.5E-09 1.4E-13 98.5 26.4 247 327-577 47-306 (389)
59 KOG1840 Kinesin light chain [C 99.3 4.1E-09 8.8E-14 110.6 27.9 230 351-580 200-477 (508)
60 COG3071 HemY Uncharacterized e 99.2 3.3E-08 7.1E-13 96.8 30.0 274 165-444 97-389 (400)
61 KOG2376 Signal recognition par 99.2 2.5E-07 5.5E-12 94.8 36.3 441 88-577 18-515 (652)
62 COG2956 Predicted N-acetylgluc 99.2 2.3E-08 4.9E-13 94.9 26.6 158 321-479 113-277 (389)
63 PF13041 PPR_2: PPR repeat fam 99.2 5E-11 1.1E-15 84.0 6.8 50 414-463 1-50 (50)
64 KOG2047 mRNA splicing factor [ 99.2 1.6E-06 3.4E-11 89.8 41.4 444 118-580 103-613 (835)
65 PRK12370 invasion protein regu 99.2 3.7E-09 8E-14 116.5 24.5 244 330-583 276-536 (553)
66 KOG1173 Anaphase-promoting com 99.2 9.4E-08 2E-12 97.5 31.6 267 291-561 251-531 (611)
67 KOG1174 Anaphase-promoting com 99.2 1.7E-07 3.7E-12 91.8 31.7 267 283-555 231-507 (564)
68 TIGR02521 type_IV_pilW type IV 99.1 1.4E-08 3E-13 99.2 23.7 199 316-549 32-233 (234)
69 KOG1840 Kinesin light chain [C 99.1 8.7E-08 1.9E-12 100.7 29.0 245 254-547 200-478 (508)
70 PRK12370 invasion protein regu 99.1 9.7E-09 2.1E-13 113.2 22.9 211 364-582 275-502 (553)
71 KOG1129 TPR repeat-containing 99.1 2.7E-09 5.9E-14 100.8 15.5 230 319-583 227-459 (478)
72 KOG3616 Selective LIM binding 99.1 5.6E-07 1.2E-11 93.9 32.1 192 357-577 739-932 (1636)
73 PRK11189 lipoprotein NlpI; Pro 99.1 8E-08 1.7E-12 96.9 25.6 227 328-562 39-280 (296)
74 KOG1129 TPR repeat-containing 99.1 6.6E-09 1.4E-13 98.3 15.8 190 389-583 227-425 (478)
75 KOG0985 Vesicle coat protein c 99.1 4.5E-06 9.7E-11 90.5 38.7 488 52-579 611-1246(1666)
76 KOG1156 N-terminal acetyltrans 99.0 3E-06 6.6E-11 88.1 35.7 227 129-360 19-262 (700)
77 COG3063 PilF Tfp pilus assembl 99.0 2.8E-08 6.1E-13 90.1 17.9 163 418-584 37-204 (250)
78 KOG3785 Uncharacterized conser 99.0 1E-06 2.2E-11 84.7 29.1 132 418-552 361-494 (557)
79 PRK11189 lipoprotein NlpI; Pro 99.0 2.8E-08 6E-13 100.2 19.7 212 364-584 40-267 (296)
80 KOG4162 Predicted calmodulin-b 99.0 7.1E-06 1.5E-10 87.2 36.2 431 107-554 313-789 (799)
81 KOG3785 Uncharacterized conser 99.0 8.2E-06 1.8E-10 78.6 33.3 213 365-585 269-493 (557)
82 KOG3616 Selective LIM binding 99.0 5.3E-06 1.1E-10 86.9 34.2 369 164-578 718-1130(1636)
83 KOG1125 TPR repeat-containing 99.0 3.5E-08 7.5E-13 101.0 18.1 248 361-627 296-556 (579)
84 KOG1174 Anaphase-promoting com 99.0 1.1E-05 2.3E-10 79.5 33.9 261 314-582 231-500 (564)
85 PF12569 NARP1: NMDA receptor- 98.9 5.8E-06 1.3E-10 88.3 33.8 255 317-578 196-516 (517)
86 KOG1156 N-terminal acetyltrans 98.9 4.4E-05 9.6E-10 79.7 37.4 128 414-545 367-508 (700)
87 KOG0985 Vesicle coat protein c 98.9 0.00012 2.7E-09 79.8 41.4 411 155-584 609-1164(1666)
88 PRK04841 transcriptional regul 98.9 0.0001 2.2E-09 87.7 45.8 233 318-552 494-764 (903)
89 KOG4340 Uncharacterized conser 98.9 6E-06 1.3E-10 77.7 27.2 407 155-582 13-443 (459)
90 COG3063 PilF Tfp pilus assembl 98.9 9.8E-07 2.1E-11 80.3 21.3 192 359-553 44-241 (250)
91 KOG2376 Signal recognition par 98.8 6.5E-05 1.4E-09 77.7 36.4 212 54-282 19-253 (652)
92 KOG1127 TPR repeat-containing 98.8 1.1E-05 2.3E-10 87.9 31.3 525 48-581 493-1103(1238)
93 KOG0548 Molecular co-chaperone 98.8 4.3E-06 9.4E-11 85.3 27.0 214 354-581 228-454 (539)
94 KOG0624 dsRNA-activated protei 98.8 1.3E-05 2.9E-10 76.9 27.0 289 258-554 43-376 (504)
95 KOG1127 TPR repeat-containing 98.8 1.1E-05 2.4E-10 87.8 29.3 421 153-580 493-994 (1238)
96 PF12569 NARP1: NMDA receptor- 98.8 5E-06 1.1E-10 88.8 26.8 126 453-580 196-332 (517)
97 KOG3617 WD40 and TPR repeat-co 98.7 0.00069 1.5E-08 72.7 41.1 117 44-176 723-850 (1416)
98 PF04733 Coatomer_E: Coatomer 98.7 1.9E-07 4E-12 92.8 13.5 145 427-581 113-264 (290)
99 KOG3617 WD40 and TPR repeat-co 98.7 8.5E-05 1.8E-09 79.3 32.6 412 72-537 716-1189(1416)
100 cd05804 StaR_like StaR_like; a 98.7 4.3E-05 9.3E-10 80.0 30.9 256 324-583 52-337 (355)
101 PF04733 Coatomer_E: Coatomer 98.7 7E-07 1.5E-11 88.7 15.8 226 317-553 37-270 (290)
102 KOG0548 Molecular co-chaperone 98.6 0.0001 2.3E-09 75.5 29.9 246 318-576 227-483 (539)
103 PRK04841 transcriptional regul 98.6 4.4E-05 9.6E-10 90.8 32.5 322 262-583 383-761 (903)
104 TIGR03302 OM_YfiO outer membra 98.6 2.8E-06 6.1E-11 83.0 18.7 180 384-582 32-232 (235)
105 cd05804 StaR_like StaR_like; a 98.6 8.8E-05 1.9E-09 77.7 30.2 148 192-343 52-214 (355)
106 KOG1914 mRNA cleavage and poly 98.6 0.00093 2E-08 68.6 35.1 126 352-478 368-499 (656)
107 KOG0624 dsRNA-activated protei 98.6 0.00045 9.8E-09 66.7 30.9 306 157-518 43-373 (504)
108 PRK15359 type III secretion sy 98.6 1.2E-06 2.5E-11 77.8 13.1 122 437-564 14-137 (144)
109 KOG1070 rRNA processing protei 98.6 5.3E-06 1.1E-10 93.2 20.7 200 382-585 1455-1666(1710)
110 PRK10370 formate-dependent nit 98.6 3.5E-06 7.6E-11 79.0 16.8 146 424-583 24-174 (198)
111 PF12854 PPR_1: PPR repeat 98.5 1.1E-07 2.5E-12 59.9 4.0 33 147-179 2-34 (34)
112 KOG4340 Uncharacterized conser 98.5 0.00021 4.6E-09 67.6 26.6 293 65-375 24-335 (459)
113 KOG1070 rRNA processing protei 98.5 2.5E-05 5.4E-10 88.0 23.0 218 250-468 1455-1688(1710)
114 PLN02789 farnesyltranstransfer 98.5 3.9E-05 8.3E-10 77.4 22.3 162 401-566 88-268 (320)
115 COG5010 TadD Flp pilus assembl 98.4 1E-05 2.2E-10 75.6 15.5 134 448-583 63-198 (257)
116 PRK15359 type III secretion sy 98.4 3.6E-06 7.8E-11 74.6 12.0 107 472-583 14-122 (144)
117 PF12854 PPR_1: PPR repeat 98.4 5.7E-07 1.2E-11 56.7 4.3 33 380-412 2-34 (34)
118 PRK10370 formate-dependent nit 98.4 3.7E-05 8E-10 72.1 18.4 155 392-557 23-182 (198)
119 PRK15363 pathogenicity island 98.4 5.2E-06 1.1E-10 72.2 11.6 118 487-627 35-154 (157)
120 PRK15179 Vi polysaccharide bio 98.4 2.5E-05 5.5E-10 86.8 20.0 191 351-557 28-226 (694)
121 KOG2053 Mitochondrial inherita 98.3 0.0066 1.4E-07 66.5 36.4 67 521-587 438-507 (932)
122 COG5010 TadD Flp pilus assembl 98.3 4.6E-05 9.9E-10 71.3 17.7 155 420-577 70-226 (257)
123 TIGR03302 OM_YfiO outer membra 98.3 3.1E-05 6.7E-10 75.7 18.1 181 349-551 32-235 (235)
124 KOG1128 Uncharacterized conser 98.3 1.8E-05 3.9E-10 83.7 16.7 210 356-583 404-617 (777)
125 COG4783 Putative Zn-dependent 98.3 0.00016 3.4E-09 73.6 22.1 119 460-580 315-435 (484)
126 PRK15179 Vi polysaccharide bio 98.3 9.5E-05 2.1E-09 82.3 22.1 191 317-526 30-229 (694)
127 PRK14720 transcript cleavage f 98.2 0.00021 4.6E-09 80.3 23.7 148 387-564 118-268 (906)
128 KOG1128 Uncharacterized conser 98.2 3.3E-05 7.1E-10 81.8 16.0 189 380-583 393-583 (777)
129 KOG1125 TPR repeat-containing 98.2 5.6E-05 1.2E-09 78.1 17.0 116 434-551 412-530 (579)
130 PLN02789 farnesyltranstransfer 98.2 0.00079 1.7E-08 68.0 25.3 209 317-531 39-267 (320)
131 KOG1914 mRNA cleavage and poly 98.2 0.011 2.4E-07 61.1 38.8 210 367-579 310-536 (656)
132 KOG2053 Mitochondrial inherita 98.2 0.018 3.9E-07 63.2 38.3 500 65-580 23-606 (932)
133 TIGR02552 LcrH_SycD type III s 98.2 1.9E-05 4.2E-10 69.5 10.8 95 488-582 18-114 (135)
134 TIGR00756 PPR pentatricopeptid 98.1 4.6E-06 1E-10 53.5 4.6 35 184-218 1-35 (35)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00011 2.4E-09 75.6 16.3 123 453-580 171-295 (395)
136 COG4783 Putative Zn-dependent 98.1 0.00057 1.2E-08 69.7 20.1 140 423-583 313-455 (484)
137 TIGR00756 PPR pentatricopeptid 98.1 6.3E-06 1.4E-10 52.8 4.3 35 83-117 1-35 (35)
138 KOG3060 Uncharacterized conser 98.0 0.00054 1.2E-08 63.7 17.7 182 364-550 26-222 (289)
139 KOG3081 Vesicle coat complex C 98.0 0.0038 8.3E-08 58.6 22.9 117 390-513 113-233 (299)
140 TIGR02552 LcrH_SycD type III s 98.0 0.00017 3.6E-09 63.4 13.4 114 438-555 5-121 (135)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00022 4.7E-09 73.4 15.8 125 389-517 173-298 (395)
142 PRK14720 transcript cleavage f 98.0 0.0019 4.2E-08 72.8 24.3 23 457-479 229-251 (906)
143 PF13812 PPR_3: Pentatricopept 97.9 1.5E-05 3.3E-10 50.6 4.3 34 183-216 1-34 (34)
144 KOG0553 TPR repeat-containing 97.9 8.6E-05 1.9E-09 70.8 10.7 104 460-565 90-195 (304)
145 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.7E-10 50.4 4.1 34 82-115 1-34 (34)
146 KOG3060 Uncharacterized conser 97.9 0.0007 1.5E-08 62.9 15.5 183 398-584 25-222 (289)
147 cd00189 TPR Tetratricopeptide 97.8 0.00021 4.5E-09 57.8 9.7 92 490-581 3-96 (100)
148 PF13414 TPR_11: TPR repeat; P 97.7 6.8E-05 1.5E-09 56.9 5.8 64 518-581 2-66 (69)
149 KOG3081 Vesicle coat complex C 97.7 0.0045 9.8E-08 58.2 18.2 120 257-379 112-236 (299)
150 PF01535 PPR: PPR repeat; Int 97.7 4.5E-05 9.7E-10 47.2 3.7 31 184-214 1-31 (31)
151 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00035 7.6E-09 59.7 10.5 99 454-552 5-109 (119)
152 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00048 1E-08 58.8 11.3 95 489-583 4-106 (119)
153 PF09976 TPR_21: Tetratricopep 97.7 0.0008 1.7E-08 59.9 12.9 124 418-545 14-144 (145)
154 PF12895 Apc3: Anaphase-promot 97.7 3.6E-05 7.8E-10 61.1 3.8 78 500-578 2-83 (84)
155 PF09976 TPR_21: Tetratricopep 97.7 0.0013 2.7E-08 58.6 14.2 114 464-578 24-143 (145)
156 PRK10153 DNA-binding transcrip 97.7 0.0019 4E-08 69.9 17.4 140 413-554 334-488 (517)
157 PF01535 PPR: PPR repeat; Int 97.6 5.5E-05 1.2E-09 46.8 3.3 31 83-113 1-31 (31)
158 PF04840 Vps16_C: Vps16, C-ter 97.6 0.11 2.3E-06 52.6 30.6 122 388-529 180-301 (319)
159 PLN03088 SGT1, suppressor of 97.6 0.00083 1.8E-08 69.5 12.7 102 460-563 11-114 (356)
160 PF13432 TPR_16: Tetratricopep 97.6 0.00017 3.8E-09 53.9 5.7 58 525-582 3-60 (65)
161 PLN03088 SGT1, suppressor of 97.5 0.00042 9.1E-09 71.7 9.9 90 494-583 9-100 (356)
162 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.13 2.9E-06 52.1 29.5 137 414-553 395-536 (660)
163 cd00189 TPR Tetratricopeptide 97.5 0.001 2.2E-08 53.6 10.2 61 490-550 37-99 (100)
164 PRK02603 photosystem I assembl 97.5 0.00071 1.5E-08 62.3 10.1 80 489-568 37-121 (172)
165 CHL00033 ycf3 photosystem I as 97.5 0.00061 1.3E-08 62.4 9.6 93 487-579 35-139 (168)
166 PF05843 Suf: Suppressor of fo 97.5 0.0028 6.1E-08 63.2 14.6 143 417-563 2-150 (280)
167 KOG0553 TPR repeat-containing 97.5 0.00034 7.3E-09 66.9 7.4 89 494-582 88-178 (304)
168 COG4235 Cytochrome c biogenesi 97.4 0.0013 2.9E-08 63.4 11.0 106 482-587 151-261 (287)
169 PRK02603 photosystem I assembl 97.4 0.0041 8.8E-08 57.2 13.6 131 415-568 34-166 (172)
170 KOG0550 Molecular chaperone (D 97.4 0.0033 7.1E-08 62.7 13.3 153 425-583 178-351 (486)
171 KOG1130 Predicted G-alpha GTPa 97.4 0.00081 1.7E-08 66.6 8.8 257 324-581 26-343 (639)
172 PF13432 TPR_16: Tetratricopep 97.4 0.00066 1.4E-08 50.7 6.5 61 493-553 3-65 (65)
173 KOG2041 WD40 repeat protein [G 97.3 0.32 6.9E-06 52.2 29.0 321 166-545 748-1083(1189)
174 PRK15331 chaperone protein Sic 97.3 0.0027 5.9E-08 55.8 10.8 88 494-581 44-133 (165)
175 CHL00033 ycf3 photosystem I as 97.3 0.0096 2.1E-07 54.5 15.2 110 416-552 35-153 (168)
176 KOG1538 Uncharacterized conser 97.3 0.042 9.1E-07 58.0 20.5 156 85-275 559-725 (1081)
177 PF14938 SNAP: Soluble NSF att 97.3 0.084 1.8E-06 52.9 22.4 100 317-416 157-268 (282)
178 PF13371 TPR_9: Tetratricopept 97.2 0.00076 1.7E-08 51.7 5.8 58 526-583 2-59 (73)
179 PF14559 TPR_19: Tetratricopep 97.2 0.00035 7.6E-09 52.8 3.5 53 530-582 2-54 (68)
180 PF13431 TPR_17: Tetratricopep 97.2 0.00021 4.5E-09 45.0 1.5 34 541-574 1-34 (34)
181 PF14938 SNAP: Soluble NSF att 97.1 0.22 4.8E-06 49.8 23.6 121 394-514 123-264 (282)
182 COG3898 Uncharacterized membra 97.1 0.38 8.2E-06 48.2 26.2 243 326-582 131-392 (531)
183 PF12895 Apc3: Anaphase-promot 97.1 0.0011 2.5E-08 52.4 5.6 81 429-512 2-83 (84)
184 PF07079 DUF1347: Protein of u 97.1 0.45 9.7E-06 48.7 33.9 71 508-579 445-521 (549)
185 PF14559 TPR_19: Tetratricopep 97.1 0.00077 1.7E-08 50.9 4.1 57 500-556 4-62 (68)
186 PRK10153 DNA-binding transcrip 97.0 0.016 3.4E-07 62.9 15.5 135 446-584 332-484 (517)
187 PF05843 Suf: Suppressor of fo 97.0 0.015 3.2E-07 58.1 14.3 126 317-444 3-135 (280)
188 COG4700 Uncharacterized protei 97.0 0.069 1.5E-06 47.6 15.9 131 447-581 85-221 (251)
189 PF08579 RPM2: Mitochondrial r 97.0 0.01 2.2E-07 48.2 9.9 80 186-265 28-116 (120)
190 PF08579 RPM2: Mitochondrial r 97.0 0.0087 1.9E-07 48.6 9.5 81 317-397 27-116 (120)
191 PF13414 TPR_11: TPR repeat; P 97.0 0.0013 2.9E-08 49.7 4.8 64 487-550 3-69 (69)
192 COG4700 Uncharacterized protei 97.0 0.094 2E-06 46.7 16.4 97 348-444 87-188 (251)
193 PF12688 TPR_5: Tetratrico pep 96.9 0.011 2.3E-07 49.9 10.3 87 493-579 7-101 (120)
194 PRK15363 pathogenicity island 96.9 0.022 4.7E-07 50.0 12.2 83 425-511 44-127 (157)
195 PF10037 MRP-S27: Mitochondria 96.9 0.017 3.6E-07 60.1 13.6 119 346-464 62-186 (429)
196 PF04840 Vps16_C: Vps16, C-ter 96.9 0.64 1.4E-05 47.1 28.7 109 286-410 179-287 (319)
197 PRK10803 tol-pal system protei 96.8 0.0064 1.4E-07 59.5 9.6 88 494-581 150-245 (263)
198 PF10037 MRP-S27: Mitochondria 96.8 0.014 3E-07 60.7 12.3 116 151-266 65-186 (429)
199 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.004 8.7E-08 63.9 8.3 65 518-582 74-141 (453)
200 KOG2796 Uncharacterized conser 96.8 0.14 3E-06 48.3 16.9 139 316-456 178-324 (366)
201 PRK10866 outer membrane biogen 96.8 0.2 4.3E-06 48.7 19.1 172 391-581 38-240 (243)
202 PF13428 TPR_14: Tetratricopep 96.7 0.0028 6.2E-08 42.7 4.4 42 520-561 2-43 (44)
203 PF12688 TPR_5: Tetratrico pep 96.7 0.042 9.1E-07 46.4 12.4 106 320-426 6-116 (120)
204 PF13371 TPR_9: Tetratricopept 96.7 0.0048 1E-07 47.2 6.3 63 495-557 3-67 (73)
205 PF13281 DUF4071: Domain of un 96.7 0.23 5E-06 50.7 19.7 160 390-552 146-338 (374)
206 COG3898 Uncharacterized membra 96.7 0.81 1.8E-05 45.9 25.8 303 68-380 70-393 (531)
207 PF06239 ECSIT: Evolutionarily 96.6 0.015 3.2E-07 53.5 9.2 90 180-269 44-154 (228)
208 PF07079 DUF1347: Protein of u 96.5 1.2 2.5E-05 45.9 32.9 406 128-545 17-521 (549)
209 KOG2041 WD40 repeat protein [G 96.5 1.7 3.6E-05 47.0 30.1 30 149-178 689-718 (1189)
210 COG5107 RNA14 Pre-mRNA 3'-end 96.5 1.3 2.7E-05 45.5 27.6 144 385-533 397-549 (660)
211 KOG1258 mRNA processing protei 96.5 1.6 3.5E-05 46.6 30.1 181 384-567 296-489 (577)
212 PRK10803 tol-pal system protei 96.4 0.034 7.3E-07 54.5 11.4 92 462-553 154-251 (263)
213 KOG2796 Uncharacterized conser 96.4 0.091 2E-06 49.5 13.1 135 220-356 179-325 (366)
214 KOG2280 Vacuolar assembly/sort 96.4 2.1 4.5E-05 46.9 31.0 109 388-512 687-795 (829)
215 PF06239 ECSIT: Evolutionarily 96.4 0.029 6.3E-07 51.6 9.6 93 307-399 37-152 (228)
216 KOG2280 Vacuolar assembly/sort 96.3 2.2 4.8E-05 46.7 29.4 335 212-579 426-796 (829)
217 PRK10866 outer membrane biogen 96.3 0.37 7.9E-06 46.9 17.6 177 189-375 38-237 (243)
218 KOG1130 Predicted G-alpha GTPa 96.3 0.15 3.2E-06 51.2 14.6 51 192-243 26-80 (639)
219 KOG1538 Uncharacterized conser 96.2 0.22 4.7E-06 52.9 16.3 81 85-177 601-683 (1081)
220 PF03704 BTAD: Bacterial trans 96.2 0.096 2.1E-06 46.5 12.1 107 461-581 16-124 (146)
221 COG0457 NrfG FOG: TPR repeat [ 96.1 1.3 2.8E-05 42.2 26.0 196 385-582 59-265 (291)
222 KOG0543 FKBP-type peptidyl-pro 96.1 0.057 1.2E-06 54.4 11.2 63 520-582 258-320 (397)
223 PF13424 TPR_12: Tetratricopep 96.1 0.0088 1.9E-07 46.5 4.2 62 520-581 6-74 (78)
224 COG0457 NrfG FOG: TPR repeat [ 95.9 1.6 3.5E-05 41.5 23.6 219 329-551 37-268 (291)
225 PF09205 DUF1955: Domain of un 95.9 0.52 1.1E-05 39.6 13.8 140 427-585 13-152 (161)
226 PF13424 TPR_12: Tetratricopep 95.9 0.012 2.5E-07 45.8 4.1 60 489-548 7-75 (78)
227 COG4235 Cytochrome c biogenesi 95.8 0.09 1.9E-06 51.1 10.6 30 415-444 155-184 (287)
228 KOG0550 Molecular chaperone (D 95.8 1.9 4.2E-05 43.7 19.7 51 427-477 260-313 (486)
229 PF13525 YfiO: Outer membrane 95.5 0.99 2.1E-05 42.6 16.5 161 394-573 14-198 (203)
230 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.058 1.3E-06 55.7 8.3 63 486-548 74-141 (453)
231 KOG4555 TPR repeat-containing 95.4 0.12 2.6E-06 43.1 8.5 89 496-584 52-146 (175)
232 PF13525 YfiO: Outer membrane 95.4 1.2 2.5E-05 42.2 16.5 143 418-582 7-170 (203)
233 KOG0543 FKBP-type peptidyl-pro 95.4 0.4 8.6E-06 48.6 13.6 94 489-582 259-355 (397)
234 KOG1941 Acetylcholine receptor 95.2 0.44 9.6E-06 47.2 13.0 122 457-578 128-271 (518)
235 PF12921 ATP13: Mitochondrial 95.2 0.21 4.5E-06 42.7 9.8 50 446-495 47-96 (126)
236 COG1729 Uncharacterized protei 95.2 0.12 2.5E-06 49.6 8.9 57 525-581 184-243 (262)
237 PRK11906 transcriptional regul 95.2 0.7 1.5E-05 48.1 15.0 142 432-576 274-430 (458)
238 KOG2114 Vacuolar assembly/sort 95.1 7 0.00015 43.6 25.6 172 157-341 339-516 (933)
239 PF13512 TPR_18: Tetratricopep 95.1 0.25 5.5E-06 42.6 9.9 57 498-554 21-82 (142)
240 PRK11906 transcriptional regul 95.0 0.29 6.2E-06 50.8 11.8 117 466-582 273-401 (458)
241 KOG2066 Vacuolar assembly/sort 95.0 7.4 0.00016 43.1 27.1 101 125-230 364-467 (846)
242 PF00515 TPR_1: Tetratricopept 94.9 0.047 1E-06 34.2 3.9 33 520-552 2-34 (34)
243 PF07719 TPR_2: Tetratricopept 94.8 0.072 1.6E-06 33.2 4.5 33 520-552 2-34 (34)
244 PF10300 DUF3808: Protein of u 94.8 7.1 0.00015 42.2 22.3 172 202-378 176-375 (468)
245 COG4105 ComL DNA uptake lipopr 94.7 3.3 7.1E-05 39.6 16.9 142 417-582 35-196 (254)
246 PF12921 ATP13: Mitochondrial 94.5 0.42 9E-06 40.8 9.7 79 451-529 2-98 (126)
247 KOG2610 Uncharacterized conser 94.4 1.2 2.5E-05 43.9 13.3 112 399-513 117-235 (491)
248 PF04184 ST7: ST7 protein; In 94.4 1 2.2E-05 47.0 13.7 147 428-589 180-331 (539)
249 smart00299 CLH Clathrin heavy 94.3 3.3 7.2E-05 36.2 15.9 85 121-209 11-95 (140)
250 PF04184 ST7: ST7 protein; In 94.3 3 6.4E-05 43.8 16.9 103 453-555 261-382 (539)
251 KOG1920 IkappaB kinase complex 94.3 14 0.0003 43.2 24.4 54 297-361 893-946 (1265)
252 PF04053 Coatomer_WDAD: Coatom 94.3 0.67 1.4E-05 49.2 12.9 131 426-583 271-403 (443)
253 COG3118 Thioredoxin domain-con 94.3 1.2 2.5E-05 43.4 13.1 120 460-582 143-265 (304)
254 PF13512 TPR_18: Tetratricopep 94.3 1.2 2.7E-05 38.5 12.0 112 425-553 19-133 (142)
255 smart00299 CLH Clathrin heavy 94.2 2.3 5.1E-05 37.2 14.6 62 455-529 73-135 (140)
256 KOG3941 Intermediate in Toll s 94.2 0.32 7E-06 46.4 9.0 100 170-269 52-174 (406)
257 COG4105 ComL DNA uptake lipopr 94.1 5.7 0.00012 38.1 20.0 178 383-581 33-232 (254)
258 PF04053 Coatomer_WDAD: Coatom 94.1 2.5 5.5E-05 45.0 16.7 101 193-309 271-372 (443)
259 PF03704 BTAD: Bacterial trans 94.0 0.5 1.1E-05 41.9 9.8 56 421-477 67-122 (146)
260 COG1729 Uncharacterized protei 94.0 0.53 1.1E-05 45.3 10.2 91 463-555 153-251 (262)
261 KOG4555 TPR repeat-containing 93.8 0.37 8E-06 40.3 7.6 90 460-551 52-147 (175)
262 COG3118 Thioredoxin domain-con 93.6 3.1 6.8E-05 40.5 14.7 47 384-430 235-286 (304)
263 PF13281 DUF4071: Domain of un 93.6 5.2 0.00011 41.1 17.1 33 328-360 195-227 (374)
264 PF10300 DUF3808: Protein of u 93.5 2.9 6.4E-05 45.1 16.3 116 464-581 246-375 (468)
265 KOG1585 Protein required for f 93.3 6.8 0.00015 37.1 15.7 199 353-576 34-250 (308)
266 PRK15331 chaperone protein Sic 93.2 2.7 5.9E-05 37.3 12.5 83 427-513 48-131 (165)
267 PF08631 SPO22: Meiosis protei 93.2 9.9 0.00021 37.9 21.9 20 527-546 254-273 (278)
268 KOG3941 Intermediate in Toll s 92.9 0.44 9.6E-06 45.5 7.7 103 65-167 48-173 (406)
269 KOG4234 TPR repeat-containing 92.9 0.52 1.1E-05 42.7 7.7 89 496-584 104-199 (271)
270 KOG0890 Protein kinase of the 92.7 36 0.00078 43.1 31.4 64 519-584 1670-1733(2382)
271 PRK09687 putative lyase; Provi 92.5 12 0.00027 37.2 26.8 80 384-466 141-221 (280)
272 KOG2114 Vacuolar assembly/sort 92.3 5.5 0.00012 44.4 15.9 114 393-513 376-489 (933)
273 PF02259 FAT: FAT domain; Int 91.9 17 0.00037 37.6 20.0 149 414-564 144-303 (352)
274 PF13181 TPR_8: Tetratricopept 91.7 0.28 6E-06 30.5 3.5 32 520-551 2-33 (34)
275 KOG2610 Uncharacterized conser 91.7 1.4 3E-05 43.3 9.5 159 428-589 115-283 (491)
276 KOG1258 mRNA processing protei 91.6 23 0.0005 38.3 33.3 129 81-212 44-180 (577)
277 PF13176 TPR_7: Tetratricopept 91.3 0.32 7E-06 30.9 3.5 26 522-547 2-27 (36)
278 KOG4648 Uncharacterized conser 91.2 0.32 7E-06 47.7 4.8 114 457-576 103-218 (536)
279 KOG2396 HAT (Half-A-TPR) repea 90.7 25 0.00053 37.2 31.4 102 447-551 455-563 (568)
280 COG4785 NlpI Lipoprotein NlpI, 90.6 10 0.00022 35.2 13.3 159 417-583 100-267 (297)
281 PF09205 DUF1955: Domain of un 90.6 9.8 0.00021 32.3 12.4 81 398-480 69-149 (161)
282 PF13170 DUF4003: Protein of u 90.6 8.4 0.00018 38.6 14.4 132 99-259 79-223 (297)
283 PF07035 Mic1: Colon cancer-as 90.2 14 0.0003 33.3 14.7 33 204-236 15-47 (167)
284 PF02259 FAT: FAT domain; Int 90.1 19 0.00041 37.2 17.6 66 518-583 145-214 (352)
285 KOG1586 Protein required for f 89.9 10 0.00022 35.7 12.8 62 492-553 118-188 (288)
286 PF13176 TPR_7: Tetratricopept 89.9 0.48 1E-05 30.1 3.3 26 555-580 1-26 (36)
287 PF09613 HrpB1_HrpK: Bacterial 89.6 12 0.00025 33.3 12.6 89 460-551 19-109 (160)
288 KOG1920 IkappaB kinase complex 89.4 51 0.0011 38.8 23.7 24 155-178 793-818 (1265)
289 PF00637 Clathrin: Region in C 89.4 0.13 2.7E-06 45.5 0.4 47 230-276 19-65 (143)
290 COG3629 DnrI DNA-binding trans 89.0 2.9 6.4E-05 41.0 9.4 76 385-460 153-236 (280)
291 KOG1585 Protein required for f 88.9 22 0.00047 33.9 16.3 20 391-410 196-215 (308)
292 COG4649 Uncharacterized protei 88.4 7.7 0.00017 34.6 10.5 116 164-279 70-193 (221)
293 PF07035 Mic1: Colon cancer-as 88.2 19 0.00041 32.4 13.9 133 239-379 15-149 (167)
294 KOG1464 COP9 signalosome, subu 88.1 26 0.00055 33.8 16.9 218 320-543 70-327 (440)
295 KOG1550 Extracellular protein 87.8 50 0.0011 36.7 21.6 246 327-582 261-538 (552)
296 KOG1941 Acetylcholine receptor 86.7 38 0.00082 34.2 18.8 162 317-478 85-273 (518)
297 PF00515 TPR_1: Tetratricopept 86.7 1.6 3.5E-05 27.0 4.2 32 417-450 2-33 (34)
298 PF13428 TPR_14: Tetratricopep 86.7 2.3 4.9E-05 28.4 5.2 32 418-451 3-34 (44)
299 PF08631 SPO22: Meiosis protei 86.6 36 0.00078 33.9 22.6 23 558-580 251-273 (278)
300 PRK09687 putative lyase; Provi 86.4 37 0.00081 33.8 26.8 118 150-269 35-158 (280)
301 PF09613 HrpB1_HrpK: Bacterial 85.8 3.8 8.3E-05 36.3 7.4 52 531-582 22-73 (160)
302 KOG1586 Protein required for f 85.8 32 0.0007 32.5 14.9 90 465-554 128-230 (288)
303 PF10345 Cohesin_load: Cohesin 85.7 69 0.0015 36.2 32.5 150 129-279 72-251 (608)
304 KOG4648 Uncharacterized conser 85.6 3 6.5E-05 41.2 7.2 86 423-519 104-198 (536)
305 COG2976 Uncharacterized protei 85.2 31 0.00066 31.7 13.9 91 458-552 96-192 (207)
306 TIGR02561 HrpB1_HrpK type III 85.0 4.4 9.5E-05 35.3 7.1 54 531-584 22-75 (153)
307 KOG4570 Uncharacterized conser 84.5 9.2 0.0002 37.6 9.8 97 380-480 59-164 (418)
308 COG1747 Uncharacterized N-term 84.4 61 0.0013 34.5 22.0 167 382-555 63-241 (711)
309 PF13170 DUF4003: Protein of u 84.2 45 0.00097 33.5 15.1 117 432-550 78-213 (297)
310 COG4649 Uncharacterized protei 84.1 31 0.00068 31.0 15.7 122 426-547 68-195 (221)
311 PF10602 RPN7: 26S proteasome 83.8 21 0.00046 32.7 11.8 55 388-442 39-99 (177)
312 COG3629 DnrI DNA-binding trans 83.8 4.5 9.8E-05 39.7 7.7 63 520-582 154-216 (280)
313 PF04097 Nic96: Nup93/Nic96; 83.7 59 0.0013 36.6 17.6 40 157-196 116-158 (613)
314 TIGR02561 HrpB1_HrpK type III 83.4 25 0.00055 30.7 11.1 43 161-203 53-96 (153)
315 PF13374 TPR_10: Tetratricopep 83.4 2.6 5.6E-05 27.4 4.3 28 520-547 3-30 (42)
316 PF13174 TPR_6: Tetratricopept 83.4 2 4.3E-05 26.2 3.5 27 525-551 6-32 (33)
317 COG3947 Response regulator con 83.3 48 0.001 32.5 15.1 59 523-581 283-341 (361)
318 PF10345 Cohesin_load: Cohesin 83.2 87 0.0019 35.4 36.7 195 44-245 27-252 (608)
319 TIGR02508 type_III_yscG type I 82.8 17 0.00038 29.1 8.9 60 292-354 47-106 (115)
320 PF10602 RPN7: 26S proteasome 82.8 13 0.00029 34.0 10.0 97 417-513 37-139 (177)
321 PRK10941 hypothetical protein; 82.4 5.4 0.00012 39.2 7.7 62 521-582 183-244 (269)
322 TIGR02508 type_III_yscG type I 82.3 18 0.00038 29.1 8.8 61 393-456 47-107 (115)
323 PF07719 TPR_2: Tetratricopept 82.0 3.4 7.4E-05 25.3 4.2 27 418-444 3-29 (34)
324 smart00028 TPR Tetratricopepti 81.5 3.4 7.5E-05 24.2 4.2 31 521-551 3-33 (34)
325 PF14853 Fis1_TPR_C: Fis1 C-te 81.2 3.4 7.3E-05 29.0 4.2 33 524-556 6-38 (53)
326 KOG1464 COP9 signalosome, subu 80.9 33 0.00071 33.1 11.7 176 399-574 41-252 (440)
327 PRK15180 Vi polysaccharide bio 80.6 24 0.00051 36.9 11.5 127 424-554 297-426 (831)
328 PF00637 Clathrin: Region in C 80.5 1.2 2.5E-05 39.3 2.3 84 123-209 13-96 (143)
329 PRK15180 Vi polysaccharide bio 79.9 13 0.00029 38.6 9.5 132 392-528 296-434 (831)
330 KOG4234 TPR repeat-containing 79.9 16 0.00034 33.6 8.9 63 493-555 140-204 (271)
331 PRK11619 lytic murein transgly 79.6 1.2E+02 0.0025 34.5 32.5 331 191-560 41-383 (644)
332 KOG4570 Uncharacterized conser 79.2 12 0.00026 36.8 8.5 101 147-248 59-165 (418)
333 cd00923 Cyt_c_Oxidase_Va Cytoc 79.0 13 0.00028 29.6 7.1 63 431-495 22-84 (103)
334 PF02284 COX5A: Cytochrome c o 79.0 11 0.00024 30.4 6.8 60 434-495 28-87 (108)
335 PF11207 DUF2989: Protein of u 78.7 9.4 0.0002 35.3 7.4 70 504-573 123-198 (203)
336 cd00923 Cyt_c_Oxidase_Va Cytoc 78.7 12 0.00027 29.8 6.9 61 99-160 24-84 (103)
337 PF13431 TPR_17: Tetratricopep 78.4 2.2 4.8E-05 26.6 2.4 20 487-506 13-32 (34)
338 COG4785 NlpI Lipoprotein NlpI, 78.1 8 0.00017 35.9 6.7 91 460-553 74-167 (297)
339 PRK12798 chemotaxis protein; R 77.6 95 0.0021 32.4 21.5 179 398-579 125-321 (421)
340 PF14669 Asp_Glu_race_2: Putat 77.0 60 0.0013 29.7 15.3 94 307-410 99-206 (233)
341 PF06552 TOM20_plant: Plant sp 76.3 14 0.0003 33.4 7.6 46 535-587 96-141 (186)
342 PF07721 TPR_4: Tetratricopept 76.0 2.8 6.1E-05 24.2 2.2 23 555-577 3-25 (26)
343 KOG0403 Neoplastic transformat 75.9 1.1E+02 0.0023 32.1 17.3 69 289-361 514-585 (645)
344 PF13374 TPR_10: Tetratricopep 75.2 7.3 0.00016 25.1 4.5 28 417-444 3-30 (42)
345 PF13174 TPR_6: Tetratricopept 74.5 2.8 6E-05 25.5 2.1 28 555-582 2-29 (33)
346 PF13181 TPR_8: Tetratricopept 74.1 5.5 0.00012 24.4 3.4 28 554-581 2-29 (34)
347 PF02284 COX5A: Cytochrome c o 74.0 14 0.00031 29.7 6.2 60 100-160 28-87 (108)
348 PF11207 DUF2989: Protein of u 73.7 21 0.00046 33.0 8.2 74 331-405 122-198 (203)
349 PF06552 TOM20_plant: Plant sp 73.4 11 0.00024 34.0 6.2 46 535-580 51-100 (186)
350 KOG0276 Vesicle coat complex C 71.1 67 0.0014 34.9 12.1 98 296-410 649-746 (794)
351 PF14853 Fis1_TPR_C: Fis1 C-te 70.7 22 0.00048 24.9 6.0 28 555-582 3-30 (53)
352 KOG1498 26S proteasome regulat 70.1 1.4E+02 0.003 30.8 15.3 110 491-604 135-263 (439)
353 COG1747 Uncharacterized N-term 69.9 1.6E+02 0.0035 31.5 19.3 159 314-479 65-233 (711)
354 PF04910 Tcf25: Transcriptiona 69.7 1.5E+02 0.0031 30.9 17.0 90 458-551 110-225 (360)
355 PF09986 DUF2225: Uncharacteri 69.6 19 0.0004 34.2 7.3 64 520-583 119-195 (214)
356 KOG4642 Chaperone-dependent E3 69.4 11 0.00024 35.5 5.5 81 501-581 24-106 (284)
357 PF09477 Type_III_YscG: Bacter 69.1 50 0.0011 27.0 8.3 86 365-454 21-106 (116)
358 KOG1308 Hsp70-interacting prot 68.8 2.5 5.4E-05 42.0 1.3 60 525-584 154-213 (377)
359 KOG4279 Serine/threonine prote 68.0 65 0.0014 35.9 11.4 183 316-552 202-399 (1226)
360 PRK13800 putative oxidoreducta 67.4 2.7E+02 0.0059 33.2 28.8 125 348-479 754-880 (897)
361 PRK13800 putative oxidoreducta 64.8 3E+02 0.0066 32.8 27.0 81 383-469 726-807 (897)
362 KOG4507 Uncharacterized conser 64.7 18 0.0004 38.7 6.6 100 462-564 618-721 (886)
363 PF09670 Cas_Cas02710: CRISPR- 64.5 88 0.0019 32.8 11.8 121 426-548 141-270 (379)
364 PF13762 MNE1: Mitochondrial s 64.2 96 0.0021 27.2 9.9 77 155-231 42-128 (145)
365 PF04190 DUF410: Protein of un 64.1 1.5E+02 0.0033 29.1 16.5 83 383-480 88-170 (260)
366 KOG3364 Membrane protein invol 63.8 32 0.00069 29.5 6.6 24 558-581 76-99 (149)
367 PF13762 MNE1: Mitochondrial s 63.0 1E+02 0.0022 27.1 9.8 50 415-464 78-128 (145)
368 COG2909 MalT ATP-dependent tra 62.9 2.9E+02 0.0063 31.9 28.1 47 398-444 471-525 (894)
369 PF14561 TPR_20: Tetratricopep 62.9 12 0.00027 29.7 4.0 43 540-582 9-51 (90)
370 PF04910 Tcf25: Transcriptiona 62.9 1.9E+02 0.0041 30.0 13.8 64 518-581 99-167 (360)
371 smart00386 HAT HAT (Half-A-TPR 62.4 13 0.00028 22.2 3.4 29 533-561 1-29 (33)
372 COG2976 Uncharacterized protei 62.2 1.3E+02 0.0029 27.8 14.3 88 359-446 98-189 (207)
373 PF07163 Pex26: Pex26 protein; 62.0 71 0.0015 31.3 9.4 86 321-408 89-181 (309)
374 COG4455 ImpE Protein of avirul 61.7 28 0.00061 32.5 6.5 64 490-553 4-69 (273)
375 TIGR03504 FimV_Cterm FimV C-te 61.5 13 0.00027 24.9 3.2 27 557-583 3-29 (44)
376 cd08819 CARD_MDA5_2 Caspase ac 59.8 40 0.00086 26.4 6.0 32 266-298 49-80 (88)
377 KOG2066 Vacuolar assembly/sort 59.4 3.1E+02 0.0067 31.2 26.7 144 253-416 392-536 (846)
378 KOG0890 Protein kinase of the 59.3 5.2E+02 0.011 33.7 28.7 56 453-512 1672-1727(2382)
379 KOG0292 Vesicle coat complex C 59.2 19 0.00042 40.5 5.9 115 429-575 606-720 (1202)
380 KOG0276 Vesicle coat complex C 58.6 1.3E+02 0.0029 32.8 11.5 101 395-513 647-747 (794)
381 KOG2471 TPR repeat-containing 58.4 2.6E+02 0.0056 29.9 13.9 110 526-640 213-330 (696)
382 PF07163 Pex26: Pex26 protein; 57.9 1.2E+02 0.0027 29.7 10.2 87 423-512 90-183 (309)
383 PF11768 DUF3312: Protein of u 57.4 1.4E+02 0.003 32.5 11.5 56 389-444 412-472 (545)
384 PF13934 ELYS: Nuclear pore co 57.0 1.9E+02 0.004 27.8 12.3 106 419-533 79-186 (226)
385 PRK10941 hypothetical protein; 56.7 62 0.0014 31.9 8.5 66 491-556 185-252 (269)
386 PRK13342 recombination factor 56.5 2.3E+02 0.0049 30.2 13.6 43 185-227 229-274 (413)
387 KOG0376 Serine-threonine phosp 56.1 6.9 0.00015 40.9 1.9 95 458-555 11-108 (476)
388 PF07720 TPR_3: Tetratricopept 55.5 38 0.00082 21.5 4.5 30 522-551 4-35 (36)
389 PF14863 Alkyl_sulf_dimr: Alky 55.4 43 0.00092 29.3 6.3 65 503-570 57-121 (141)
390 KOG2396 HAT (Half-A-TPR) repea 55.1 3E+02 0.0064 29.6 32.3 388 182-581 104-558 (568)
391 PHA02875 ankyrin repeat protei 54.9 2.8E+02 0.0062 29.3 17.0 19 159-177 72-90 (413)
392 KOG3807 Predicted membrane pro 54.1 1.2E+02 0.0027 30.2 9.7 116 422-557 281-400 (556)
393 PF04190 DUF410: Protein of un 52.9 2.4E+02 0.0051 27.8 18.6 159 164-344 2-170 (260)
394 PF10366 Vps39_1: Vacuolar sor 52.3 82 0.0018 26.0 7.3 27 185-211 41-67 (108)
395 PF10579 Rapsyn_N: Rapsyn N-te 51.0 26 0.00056 26.8 3.7 11 468-478 23-33 (80)
396 PF14561 TPR_20: Tetratricopep 50.9 1.2E+02 0.0026 24.1 7.8 62 518-579 21-85 (90)
397 COG4976 Predicted methyltransf 50.8 24 0.00053 33.2 4.3 58 496-553 4-63 (287)
398 PF12862 Apc5: Anaphase-promot 50.6 39 0.00085 27.0 5.1 53 529-581 8-69 (94)
399 KOG0545 Aryl-hydrocarbon recep 49.5 64 0.0014 30.8 6.8 53 530-582 241-293 (329)
400 TIGR03504 FimV_Cterm FimV C-te 49.3 39 0.00085 22.6 4.0 23 422-444 5-27 (44)
401 PF13929 mRNA_stabil: mRNA sta 49.1 2.8E+02 0.0061 27.5 19.4 60 250-309 199-263 (292)
402 KOG2063 Vacuolar assembly/sort 48.6 5.1E+02 0.011 30.4 24.8 130 317-462 506-637 (877)
403 PF10579 Rapsyn_N: Rapsyn N-te 48.3 61 0.0013 24.9 5.3 47 428-474 18-66 (80)
404 PF14669 Asp_Glu_race_2: Putat 48.2 2.3E+02 0.0049 26.2 14.2 96 172-277 96-205 (233)
405 KOG0551 Hsp90 co-chaperone CNS 48.1 62 0.0013 32.5 6.7 90 490-579 84-179 (390)
406 cd08819 CARD_MDA5_2 Caspase ac 47.8 1.3E+02 0.0027 23.7 7.0 39 397-436 48-86 (88)
407 PF11846 DUF3366: Domain of un 47.4 54 0.0012 30.4 6.4 38 514-551 139-176 (193)
408 PF11663 Toxin_YhaV: Toxin wit 47.3 27 0.00059 29.8 3.7 33 93-127 106-138 (140)
409 COG3947 Response regulator con 47.1 3E+02 0.0065 27.3 12.7 57 388-444 282-341 (361)
410 KOG4077 Cytochrome c oxidase, 46.9 1E+02 0.0022 26.1 6.8 71 434-515 67-137 (149)
411 PRK13342 recombination factor 45.9 4E+02 0.0086 28.3 17.7 49 316-364 228-279 (413)
412 PF10366 Vps39_1: Vacuolar sor 45.9 1.6E+02 0.0035 24.3 8.1 27 418-444 41-67 (108)
413 KOG3824 Huntingtin interacting 45.2 32 0.00069 33.8 4.3 60 498-557 127-188 (472)
414 cd08326 CARD_CASP9 Caspase act 45.1 62 0.0013 25.3 5.2 33 298-330 44-76 (84)
415 PF08311 Mad3_BUB1_I: Mad3/BUB 44.8 1.1E+02 0.0024 26.1 7.2 42 537-578 81-124 (126)
416 PF11848 DUF3368: Domain of un 44.4 80 0.0017 21.5 5.1 33 194-226 13-45 (48)
417 PF12862 Apc5: Anaphase-promot 44.2 76 0.0016 25.3 5.9 27 523-549 45-71 (94)
418 PHA02537 M terminase endonucle 44.0 1.8E+02 0.0039 27.8 9.1 22 531-552 190-211 (230)
419 TIGR02270 conserved hypothetic 43.1 4.3E+02 0.0094 28.0 24.9 19 89-109 45-63 (410)
420 KOG4642 Chaperone-dependent E3 43.0 2E+02 0.0043 27.7 8.8 117 395-513 20-143 (284)
421 KOG1524 WD40 repeat-containing 40.9 1.4E+02 0.0031 31.9 8.3 91 484-577 570-668 (737)
422 KOG0991 Replication factor C, 40.6 3.3E+02 0.0071 26.1 9.8 48 404-452 227-274 (333)
423 PF06957 COPI_C: Coatomer (COP 40.4 94 0.002 32.8 7.2 40 513-552 292-333 (422)
424 KOG4507 Uncharacterized conser 39.8 1.4E+02 0.0031 32.4 8.3 133 448-583 568-706 (886)
425 KOG4077 Cytochrome c oxidase, 39.4 1.3E+02 0.0028 25.5 6.3 59 100-159 67-125 (149)
426 PRK11619 lytic murein transgly 39.1 6.3E+02 0.014 28.7 40.5 393 155-587 102-510 (644)
427 PF11848 DUF3368: Domain of un 38.9 73 0.0016 21.7 4.2 33 93-125 13-45 (48)
428 PF09477 Type_III_YscG: Bacter 38.8 2.2E+02 0.0048 23.4 10.3 34 310-345 66-99 (116)
429 COG2912 Uncharacterized conser 38.7 92 0.002 30.4 6.3 60 523-582 185-244 (269)
430 COG2909 MalT ATP-dependent tra 38.2 7E+02 0.015 29.0 25.3 219 325-544 425-684 (894)
431 COG2178 Predicted RNA-binding 37.7 3.4E+02 0.0073 25.2 9.6 51 395-445 39-98 (204)
432 PF11846 DUF3366: Domain of un 37.7 88 0.0019 29.0 6.2 32 448-479 141-172 (193)
433 PHA02875 ankyrin repeat protei 37.1 5.2E+02 0.011 27.2 17.6 83 189-279 71-158 (413)
434 PF00244 14-3-3: 14-3-3 protei 37.0 3.9E+02 0.0085 25.8 10.7 58 321-378 7-65 (236)
435 KOG2062 26S proteasome regulat 36.8 6.8E+02 0.015 28.5 28.3 118 426-547 511-634 (929)
436 KOG2471 TPR repeat-containing 36.8 5.7E+02 0.012 27.5 14.0 103 393-498 248-380 (696)
437 PF14689 SPOB_a: Sensor_kinase 36.6 64 0.0014 23.5 3.9 23 421-443 28-50 (62)
438 KOG2063 Vacuolar assembly/sort 36.6 7.7E+02 0.017 29.0 18.5 129 85-229 507-637 (877)
439 cd00280 TRFH Telomeric Repeat 36.5 3.4E+02 0.0074 24.9 12.8 37 525-562 117-153 (200)
440 PF11838 ERAP1_C: ERAP1-like C 36.1 4.7E+02 0.01 26.4 17.3 98 466-563 145-246 (324)
441 COG0790 FOG: TPR repeat, SEL1 36.0 4.5E+02 0.0097 26.1 16.6 181 399-586 55-270 (292)
442 COG4976 Predicted methyltransf 36.0 50 0.0011 31.2 3.9 56 529-584 5-60 (287)
443 KOG3824 Huntingtin interacting 36.0 56 0.0012 32.2 4.4 56 461-518 126-182 (472)
444 KOG0403 Neoplastic transformat 35.9 5.6E+02 0.012 27.2 17.6 56 390-445 514-572 (645)
445 PF15469 Sec5: Exocyst complex 35.5 3.5E+02 0.0076 24.7 11.8 24 456-479 91-114 (182)
446 PF11663 Toxin_YhaV: Toxin wit 35.4 40 0.00086 28.9 2.9 33 427-461 106-138 (140)
447 PRK10564 maltose regulon perip 35.3 73 0.0016 31.6 5.1 42 417-458 258-299 (303)
448 PF15161 Neuropep_like: Neurop 35.0 24 0.00051 24.5 1.3 17 677-694 11-27 (65)
449 PRK10564 maltose regulon perip 35.0 67 0.0015 31.9 4.8 38 186-223 260-297 (303)
450 KOG2297 Predicted translation 33.7 5E+02 0.011 26.0 10.2 18 521-538 323-340 (412)
451 COG4455 ImpE Protein of avirul 32.8 4.4E+02 0.0095 25.1 12.7 125 418-554 3-140 (273)
452 PRK13184 pknD serine/threonine 32.6 9.3E+02 0.02 28.8 20.9 150 430-582 670-833 (932)
453 cd08332 CARD_CASP2 Caspase act 32.1 1.4E+02 0.0031 23.6 5.5 29 299-327 49-77 (90)
454 PF04781 DUF627: Protein of un 32.0 3E+02 0.0065 22.9 7.7 24 538-561 63-86 (111)
455 PF10255 Paf67: RNA polymerase 31.4 2.8E+02 0.0061 29.2 9.0 54 289-342 127-191 (404)
456 COG2256 MGS1 ATPase related to 30.9 6.5E+02 0.014 26.5 12.3 52 313-364 244-298 (436)
457 KOG4521 Nuclear pore complex, 30.3 1.1E+03 0.023 28.7 14.0 57 454-512 986-1046(1480)
458 cd08326 CARD_CASP9 Caspase act 30.1 2.7E+02 0.0058 21.8 6.7 40 396-435 41-80 (84)
459 PF12968 DUF3856: Domain of Un 30.0 3.4E+02 0.0074 22.9 9.8 22 558-579 105-126 (144)
460 PF11768 DUF3312: Protein of u 29.9 2.9E+02 0.0062 30.1 8.8 60 186-247 411-473 (545)
461 PF08225 Antimicrobial19: Pseu 29.8 35 0.00075 18.3 1.1 12 683-694 10-21 (23)
462 KOG4279 Serine/threonine prote 29.8 3.7E+02 0.008 30.4 9.6 27 681-707 490-516 (1226)
463 PF11838 ERAP1_C: ERAP1-like C 29.6 6E+02 0.013 25.6 16.8 79 367-445 147-230 (324)
464 KOG0687 26S proteasome regulat 29.3 5.2E+02 0.011 26.2 9.7 131 430-583 36-174 (393)
465 smart00777 Mad3_BUB1_I Mad3/BU 29.1 3.3E+02 0.0071 23.2 7.5 67 505-577 51-123 (125)
466 KOG0545 Aryl-hydrocarbon recep 28.6 5.5E+02 0.012 24.9 10.4 63 491-553 234-298 (329)
467 COG5187 RPN7 26S proteasome re 28.5 2.2E+02 0.0047 28.1 6.8 111 473-583 60-185 (412)
468 PF04034 DUF367: Domain of unk 28.3 3.8E+02 0.0082 22.9 7.8 60 486-545 65-125 (127)
469 KOG1114 Tripeptidyl peptidase 28.2 1.1E+03 0.023 28.0 15.2 69 435-503 1215-1283(1304)
470 PF08424 NRDE-2: NRDE-2, neces 28.1 6.5E+02 0.014 25.6 11.6 114 432-549 47-184 (321)
471 COG5108 RPO41 Mitochondrial DN 28.1 2.7E+02 0.0058 30.9 8.1 46 122-167 33-80 (1117)
472 PF04097 Nic96: Nup93/Nic96; 28.0 9.2E+02 0.02 27.3 17.1 41 256-296 114-157 (613)
473 COG5159 RPN6 26S proteasome re 27.7 6.1E+02 0.013 25.1 13.7 120 321-440 9-149 (421)
474 KOG1550 Extracellular protein 27.6 8.9E+02 0.019 27.0 23.9 17 129-145 261-277 (552)
475 COG5191 Uncharacterized conser 27.6 1.2E+02 0.0027 30.1 5.1 76 483-558 103-181 (435)
476 KOG0292 Vesicle coat complex C 27.4 9.4E+02 0.02 28.1 12.2 131 394-548 652-782 (1202)
477 PF08967 DUF1884: Domain of un 27.4 66 0.0014 24.6 2.6 26 613-638 8-33 (85)
478 PF08311 Mad3_BUB1_I: Mad3/BUB 27.3 3.9E+02 0.0085 22.7 9.4 43 434-476 81-124 (126)
479 PF14689 SPOB_a: Sensor_kinase 27.2 1.3E+02 0.0029 21.8 4.3 30 450-479 22-51 (62)
480 PF07575 Nucleopor_Nup85: Nup8 27.2 70 0.0015 35.7 4.2 90 84-177 374-463 (566)
481 PF13929 mRNA_stabil: mRNA sta 27.2 6.4E+02 0.014 25.1 18.2 67 447-513 198-264 (292)
482 PF11525 CopK: Copper resistan 27.1 22 0.00047 26.1 0.1 22 698-719 8-29 (73)
483 PF08424 NRDE-2: NRDE-2, neces 26.9 6.9E+02 0.015 25.4 15.5 115 468-584 48-185 (321)
484 cd08323 CARD_APAF1 Caspase act 26.3 2.3E+02 0.005 22.3 5.6 31 298-328 42-72 (86)
485 PF12968 DUF3856: Domain of Un 26.3 4E+02 0.0087 22.5 7.4 66 252-341 54-126 (144)
486 COG0735 Fur Fe2+/Zn2+ uptake r 26.0 3E+02 0.0065 24.2 7.1 63 206-269 9-71 (145)
487 PF09670 Cas_Cas02710: CRISPR- 25.7 7.9E+02 0.017 25.7 11.8 55 324-379 140-198 (379)
488 COG0735 Fur Fe2+/Zn2+ uptake r 25.2 2.7E+02 0.0059 24.4 6.6 34 86-119 24-57 (145)
489 COG5108 RPO41 Mitochondrial DN 24.7 3.5E+02 0.0076 30.1 8.3 43 258-300 33-81 (1117)
490 PRK11639 zinc uptake transcrip 24.5 2.9E+02 0.0063 25.0 6.9 46 86-131 29-74 (169)
491 KOG1308 Hsp70-interacting prot 24.2 82 0.0018 31.8 3.4 117 463-582 126-244 (377)
492 KOG4567 GTPase-activating prot 24.2 6.1E+02 0.013 25.5 9.1 41 104-144 265-305 (370)
493 KOG0376 Serine-threonine phosp 23.7 1.4E+02 0.0031 31.6 5.1 80 396-477 15-98 (476)
494 smart00544 MA3 Domain in DAP-5 23.7 4.1E+02 0.0089 21.8 7.6 21 189-209 8-28 (113)
495 PRK11639 zinc uptake transcrip 23.5 2.8E+02 0.0061 25.1 6.6 60 209-269 17-76 (169)
496 PF04123 DUF373: Domain of unk 23.3 6.6E+02 0.014 25.8 9.7 83 536-646 28-112 (344)
497 PRK09462 fur ferric uptake reg 23.3 4.3E+02 0.0093 23.2 7.7 61 208-269 7-68 (148)
498 TIGR02270 conserved hypothetic 22.6 9.4E+02 0.02 25.5 25.4 121 383-514 159-279 (410)
499 TIGR02710 CRISPR-associated pr 22.5 9.1E+02 0.02 25.3 12.0 52 425-476 139-196 (380)
500 PF13934 ELYS: Nuclear pore co 22.3 6.9E+02 0.015 23.9 12.3 115 398-520 91-205 (226)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.7e-134 Score=1163.60 Aligned_cols=705 Identities=35% Similarity=0.642 Sum_probs=681.8
Q ss_pred CCCCCCCcchHHHHhhC---CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCCCCc
Q 004938 6 QPTKPLTLPTSTAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPS 82 (722)
Q Consensus 6 ~~~~p~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~~~~ 82 (722)
.+.+|+..++..++++| +.+..+.++|..+.+.+. .++..++|+|+++|++ + |+++.|+++|++|++||+
T Consensus 80 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~n~li~~~~~--~--g~~~~A~~~f~~m~~~d~ 152 (857)
T PLN03077 80 LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP---SLGVRLGNAMLSMFVR--F--GELVHAWYVFGKMPERDL 152 (857)
T ss_pred cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHHHHh--C--CChHHHHHHHhcCCCCCe
Confidence 35678889999999999 678899999999999998 7899999999999999 9 999999999999999999
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 004938 83 RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162 (722)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 162 (722)
++||++|.+|++.|++++|+++|++|...|+.||.+||+.++++|++.+++..+.++|..+++.|+.||+.++|+||.+|
T Consensus 153 ~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y 232 (857)
T PLN03077 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232 (857)
T ss_pred eEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 004938 163 GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242 (722)
Q Consensus 163 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 242 (722)
+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|++.|+++.|.+++.
T Consensus 233 ~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred hcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHH----------------------------
Q 004938 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGY---------------------------- 294 (722)
Q Consensus 243 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---------------------------- 294 (722)
.+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|.++||++|.+|
T Consensus 313 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred HHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 9999999999999999999999999999999999999888888887777776
Q ss_pred ------------------------------------------HhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 004938 295 ------------------------------------------SRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332 (722)
Q Consensus 295 ------------------------------------------~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 332 (722)
+++|++++|.++|++|.++|+++||++|.+|+++|+.+
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~ 472 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCF 472 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHH
Confidence 45566666777777777788899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 004938 333 EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412 (722)
Q Consensus 333 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 412 (722)
+|+.+|++|.. +++||..||+.++.+|++.|+++.+.++|..+.+.|+.++..++|+|+++|+++|++++|.++|+.+
T Consensus 473 eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~- 550 (857)
T PLN03077 473 EALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH- 550 (857)
T ss_pred HHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-
Confidence 99999999986 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHH
Q 004938 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492 (722)
Q Consensus 413 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 492 (722)
.+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999977899999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchH
Q 004938 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 572 (722)
|+++|++.|++++|.+++++|+++||..+|++|+.+|+.+|+.+.|+.+.+++++++|+++..|+.|+++|+..|+|++|
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCcccCCcccccccchHHHhHhhh
Q 004938 573 GELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL 652 (722)
Q Consensus 573 ~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~ 652 (722)
.++++.|+++|++|+||+|||++++.+|.|.+||.+||+.++||+.|+++..+|++.||+||+..++ +.++++|+..++
T Consensus 711 ~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~ 789 (857)
T PLN03077 711 ARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFC 789 (857)
T ss_pred HHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888 457789999999
Q ss_pred hchHHHHHHHHhhcCCCCCcEEEEcccccCcchhHHHHHHhhhcCceEEEecCCccccccCCccCCCC
Q 004938 653 WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKD 720 (722)
Q Consensus 653 ~~~~~la~~~~~~~~~~~~~~~i~~nl~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~ 720 (722)
+||||||+|||||+||+|.||||+||||||+|||+++||||++++|+|||||.+|||||+||+|||+|
T Consensus 790 ~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 790 GHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred hccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.2e-124 Score=1056.15 Aligned_cols=613 Identities=33% Similarity=0.639 Sum_probs=603.3
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHH
Q 004938 79 APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG-LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG 157 (722)
Q Consensus 79 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 157 (722)
.++..+|+++|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999999764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHH
Q 004938 158 LVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237 (722)
Q Consensus 158 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 237 (722)
|+.+|+++|++++|+++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcch
Q 004938 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317 (722)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~ 317 (722)
.+++..+.+.|+.+|..++|+||++|+++|++++|.++ |++|.++|+++
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v-------------------------------f~~m~~~~~vt 292 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV-------------------------------FDGMPEKTTVA 292 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHH-------------------------------HHhCCCCChhH
Confidence 99999999999999999999999999999999999999 78888889999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 004938 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397 (722)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 397 (722)
||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|..+.+.|+.||..++++|+++|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004938 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477 (722)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 477 (722)
+|++++|.++|++|.++|+.+||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 478 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
.+++|+.|+..+|++|+++|++.|++++|.+++++|++.|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|.
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcchHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCcccCCcc
Q 004938 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHS 637 (722)
Q Consensus 558 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~pd~~~ 637 (722)
.|+++|++.|+|++|.++++.|+++|+++.||+|||++++.+|.|.+||..||+..+|++++.++..+|++.||+||+..
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHhHhhhhchHHHHHHHHhhcCCCCCcEEEEcccccCcchhHHHHHHhhhcCceEEEecCCccccccCCccC
Q 004938 638 ALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCS 717 (722)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~i~~nl~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~cs 717 (722)
++|++++++|+..+++||||||+|||||+||+|.||||+||||+|+|||+++||||++++|+|||||.+|||||+||+||
T Consensus 613 ~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~cs 692 (697)
T PLN03081 613 LLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCS 692 (697)
T ss_pred hhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 004938 718 CKDYW 722 (722)
Q Consensus 718 c~~~~ 722 (722)
|+|||
T Consensus 693 c~d~w 697 (697)
T PLN03081 693 CGDYW 697 (697)
T ss_pred ccccC
Confidence 99999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-72 Score=652.55 Aligned_cols=671 Identities=21% Similarity=0.270 Sum_probs=581.6
Q ss_pred CCcchHHHHhhC---CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhcc----CCCCCcc
Q 004938 11 LTLPTSTAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQ----IPAPPSR 83 (722)
Q Consensus 11 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~----~~~~~~~ 83 (722)
...++.++++++ +.+..+..++..+.+.|. .++..+++.++..+.+ . +.++.|.++++. .+.++..
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~---~~~~~~~~~ll~~~~~--~--~~~~~a~~~~~~~~~~~~~~~~~ 122 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRV---PVDEDAYVALFRLCEW--K--RAVEEGSRVCSRALSSHPSLGVR 122 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CCChhHHHHHHHHHhh--C--CCHHHHHHHHHHHHHcCCCCCch
Confidence 334445555555 678888889999988887 8899999999999988 7 889999998875 3557888
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 004938 84 VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYG 163 (722)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 163 (722)
.+|++|.+|++.|+++.|+++|++|. .||..+|+.++.+|++.|++++|.++|+.|.+.|+.||.++|+.++.+|+
T Consensus 123 ~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 99999999999999999999999996 47999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHhcCC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHH
Q 004938 164 ACGKILDARLMFDKMS----YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 239 (722)
+.++++.+.+++..|. .+|+.+||+||.+|++.|++++|.++|++|. .||..||+++|.+|++.|++++|.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHH
Confidence 9999999999998886 4789999999999999999999999999996 4789999999999999999999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcc----cCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCc
Q 004938 240 VHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL----LKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315 (722)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~ 315 (722)
+|.+|.+.|+.||..+|+.++.+|++.|+++.|.+++..|. .+|..+||++|.+|++.|++++|.++|++|..+|+
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 354 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe
Confidence 99999999999999999999999999999999999999985 46899999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 395 (722)
++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.++..++|+|+++|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004938 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 475 (722)
+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|.++.+.+++.
T Consensus 435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999986 599999999999999999999999999999
Q ss_pred HhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCC
Q 004938 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL--DPDHD 553 (722)
Q Consensus 476 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~ 553 (722)
.+.+ .|+.++..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.++|++|.+. .|+ .
T Consensus 514 ~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~ 589 (857)
T PLN03077 514 HVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-E 589 (857)
T ss_pred HHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-c
Confidence 9998 599999999999999999999999999999999 799999999999999999999999999999975 465 4
Q ss_pred chHHHHHHHhhhCCCcchHHHHHHHHH-hCCCccCCcccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCcc
Q 004938 554 GALVLLSNIYAKDKRWQDVGELRKSMK-ERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYV 632 (722)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~ 632 (722)
.+|..++.+|.+.|++++|.++|+.|+ +.|+.|+..... ..+..+. ..++. +++.++++ ++++.
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~----~lv~~l~----r~G~~----~eA~~~~~---~m~~~ 654 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA----CVVDLLG----RAGKL----TEAYNFIN---KMPIT 654 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH----HHHHHHH----hCCCH----HHHHHHHH---HCCCC
Confidence 688999999999999999999999999 678876542100 0000000 01111 23334444 45789
Q ss_pred cCCcccccccchHHHhHhhhhchHHHH-HHHHhhcCCCCCcEEEEcccccCcchhHHHHHHhhhcCceEEE-------ec
Q 004938 633 PDIHSALVDLEDEEKREVILWHSEKLA-LCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVI-------RD 704 (722)
Q Consensus 633 pd~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~~~~~~~~~~i~~nl~~~~~~~~~~~~~s~~~~~~~~~-------~~ 704 (722)
||...|-.-+..+...+.+.- .|+.| ..+.+.|..++..+.+.+-....|+..++.+.-..|-.+.+-- --
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~-~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~ 733 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVEL-GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV 733 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE
Confidence 998776544444322111110 12222 3455666666655545555677899999999998887763221 11
Q ss_pred CCccccccCCccC
Q 004938 705 RTRFHHYKDGVCS 717 (722)
Q Consensus 705 ~~~~h~~~~g~cs 717 (722)
.+..|-|..|--|
T Consensus 734 ~~~~~~f~~~d~~ 746 (857)
T PLN03077 734 KGKVHAFLTDDES 746 (857)
T ss_pred CCEEEEEecCCCC
Confidence 3567888666443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.7e-66 Score=585.03 Aligned_cols=507 Identities=18% Similarity=0.248 Sum_probs=368.1
Q ss_pred CchhHHHHHHHhccCCCCCCCChHHHHHHhccCCCCCcch-----HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCccc
Q 004938 45 QNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRV-----SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119 (722)
Q Consensus 45 ~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 119 (722)
++...+..+++.+.+ + |++++|+++|++|+.++... ++.++.+|.+.|..++|+.+|+.|.. ||..+
T Consensus 368 ~~~~~~~~~y~~l~r--~--G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~T 439 (1060)
T PLN03218 368 RKSPEYIDAYNRLLR--D--GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLST 439 (1060)
T ss_pred CCchHHHHHHHHHHH--C--cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHH
Confidence 344455555555555 5 66666666666665544433 33445556666666666666666653 66666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCC----CCCcccHHHHHHHHHh
Q 004938 120 FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS----YRDIVPWSVMIDGYFQ 195 (722)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~ 195 (722)
|+.++++|++.|+++.|.++|+.|.+.|+.||..+||.||.+|+++|++++|.++|++|. .||.++||+||.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666665 3566666666666666
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH--cCCCCCHhHHHHHHHHHHhcCChHHHH
Q 004938 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID--NNVALDAHLQSTLITMYANCGCMDMAK 273 (722)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~ 273 (722)
.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|++|.+ .|+.||..+|++||.+|+++|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 666666666666666666666666666666666666666666666666654 455666666666666666666666666
Q ss_pred HHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhH
Q 004938 274 GLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353 (722)
Q Consensus 274 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 353 (722)
++|++|.+.+ ..++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 600 elf~~M~e~g---------------------------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 600 EVYQMIHEYN---------------------------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred HHHHHHHHcC---------------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 6644442221 2345678888888888888888888888888888888888888
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChHHHHHHHHHHHHc
Q 004938 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR----RRNVISWTSMINAFAIH 429 (722)
Q Consensus 354 ~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 429 (722)
+.++.+|++.|++++|.++++.|.+.|+.|+..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 88888888888888888888888888888888888888888888888888888888884 47888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH----hc-----
Q 004938 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG----RA----- 500 (722)
Q Consensus 430 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~----- 500 (722)
|+.++|+++|++|...|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.||..+|++|++++. ++
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 88888888888888888888888888888888888888888888888877 488888888888876633 22
Q ss_pred --------------CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-cCCCCCchHHHHHHH
Q 004938 501 --------------NLLREALELVETM---PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ-LDPDHDGALVLLSNI 562 (722)
Q Consensus 501 --------------g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~ 562 (722)
+..++|..+|++| ++.||..+|+.++..+...+..+.+..+++.+.. -.+.+..+|..|++.
T Consensus 812 ~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g 891 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891 (1060)
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh
Confidence 2346799999999 8999999999999777788888888888877643 234556788889887
Q ss_pred hhhCCCcchHHHHHHHHHhCCCccCCc
Q 004938 563 YAKDKRWQDVGELRKSMKERGILKERA 589 (722)
Q Consensus 563 ~~~~g~~~~a~~~~~~m~~~g~~~~~~ 589 (722)
+.+. .++|..++++|.+.|+.|+..
T Consensus 892 ~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 892 FGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 7332 358999999999999997754
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-64 Score=569.36 Aligned_cols=438 Identities=24% Similarity=0.412 Sum_probs=415.2
Q ss_pred CCCCCCcchHHHHhhC---CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCCCCcc
Q 004938 7 PTKPLTLPTSTAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSR 83 (722)
Q Consensus 7 ~~~p~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~~~~~ 83 (722)
+..|+..+|.+++++| ++...+.++|..+.+.|. .+++.++|.|+++|++ + |.++.|+++|++|+.||.+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~---~~~~~~~n~Li~~y~k--~--g~~~~A~~lf~~m~~~~~~ 190 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF---EPDQYMMNRVLLMHVK--C--GMLIDARRLFDEMPERNLA 190 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CcchHHHHHHHHHHhc--C--CCHHHHHHHHhcCCCCCee
Confidence 4678999999999999 678889999999999998 8999999999999999 9 9999999999999999999
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 004938 84 VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYG 163 (722)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 163 (722)
+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|++.+.++.+.++|..+.+.|+.+|..++|+|+++|+
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~ 270 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHH
Q 004938 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 243 (722)
++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|+++|+.
T Consensus 271 k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~ 350 (697)
T PLN03081 271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350 (697)
T ss_pred HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHH
Q 004938 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323 (722)
Q Consensus 244 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 323 (722)
|.+.|+.||..++++|+++|+++|++++|.++ |++|.++|+++||+||.
T Consensus 351 m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v-------------------------------f~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNV-------------------------------FDRMPRKNLISWNALIA 399 (697)
T ss_pred HHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH-------------------------------HHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999 78888889999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCHH
Q 004938 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK-NAFGGDLRVNNAIIDMYAKCGSLE 402 (722)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~ 402 (722)
+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999986 699999999999999999999999
Q ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 004938 403 SAREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNE 480 (722)
Q Consensus 403 ~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 480 (722)
+|.++|++|. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.++
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999987 58888999999999999999999999888865 5665 457888888888888888888888888874
Q ss_pred cCCCC
Q 004938 481 YNIPP 485 (722)
Q Consensus 481 ~~~~~ 485 (722)
|+..
T Consensus 558 -g~~k 561 (697)
T PLN03081 558 -GLSM 561 (697)
T ss_pred -CCcc
Confidence 6543
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.2e-63 Score=561.69 Aligned_cols=502 Identities=17% Similarity=0.209 Sum_probs=399.2
Q ss_pred CcchHHHHhhC---CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCCCCcchHHHH
Q 004938 12 TLPTSTAISSC---SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKF 88 (722)
Q Consensus 12 ~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l 88 (722)
...+..++..| +++..+.+++..+.+.+. .+++..+++.++..|.+ . |.+++|..+|+.|+.||..+||.+
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv--v~~~~v~~~~li~~~~~--~--g~~~eAl~lf~~M~~pd~~Tyn~L 443 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL--LDMDKIYHAKFFKACKK--Q--RAVKEAFRFAKLIRNPTLSTFNML 443 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHHH--C--CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 33444444444 788999999999998885 25678888999999998 7 999999999999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCH
Q 004938 89 IRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKI 168 (722)
Q Consensus 89 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 168 (722)
|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHH--CCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 004938 169 LDARLMFDKMS----YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKM--SNVEPDEMVLSKILSACSRAGNLSYGEAVHE 242 (722)
Q Consensus 169 ~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 242 (722)
++|.++|++|. .||.++||.||.+|++.|++++|.++|++|.. .|+.||..||+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999996 47999999999999999999999999999976 6899999999999999999999999999999
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHH
Q 004938 243 FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMI 322 (722)
Q Consensus 243 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 322 (722)
.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...+ ..+|..+|+.+|
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G---------------------------v~PD~~TynsLI 656 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG---------------------------VKPDEVFFSALV 656 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCCHHHHHHHH
Confidence 99999999999999999999999999999999987774321 234555555555
Q ss_pred HHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 004938 323 SGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLE 402 (722)
Q Consensus 323 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 402 (722)
.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.|+++
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e 736 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---------------
Q 004938 403 SAREVFERMRR----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH--------------- 463 (722)
Q Consensus 403 ~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--------------- 463 (722)
+|.++|++|.+ ||..+|++++.+|++.|+.++|.++|++|.+.|+.||..+|+.++..|.+
T Consensus 737 eAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f 816 (1060)
T PLN03218 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSF 816 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 55555555542 55555555555555555555555555555555555555555555543321
Q ss_pred --------cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc
Q 004938 464 --------AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM---PFAPNVVIWGSLMAACRVH 532 (722)
Q Consensus 464 --------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~ 532 (722)
.+..++|..+|++|.+ .|+.||..+|+.++..+.+.+..+.+..+++.| +..|+..+|++|+.++.+.
T Consensus 817 ~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~ 895 (1060)
T PLN03218 817 DSGRPQIENKWTSWALMVYRETIS-AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY 895 (1060)
T ss_pred hccccccccchHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC
Confidence 1234678889999987 489999999999998888888888898888888 4556788999999988433
Q ss_pred CCHHHHHHHHHHHHccC
Q 004938 533 GEIELAEFAAKQLLQLD 549 (722)
Q Consensus 533 g~~~~a~~~~~~~~~~~ 549 (722)
.++|..++++|.+.+
T Consensus 896 --~~~A~~l~~em~~~G 910 (1060)
T PLN03218 896 --DPRAFSLLEEAASLG 910 (1060)
T ss_pred --hHHHHHHHHHHHHcC
Confidence 468999999988754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-31 Score=316.03 Aligned_cols=543 Identities=13% Similarity=0.067 Sum_probs=403.2
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCch
Q 004938 23 SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP---APPSRVSNKFIRAISWSHRPK 99 (722)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~ 99 (722)
++...+...+..+++..+ .++..+..+...+.. . |+++.|...+..+. +.+...|+.+...+.+.|+++
T Consensus 309 g~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~--~--g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 380 (899)
T TIGR02917 309 GNLEQAYQYLNQILKYAP----NSHQARRLLASIQLR--L--GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380 (899)
T ss_pred CCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHH--C--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHH
Confidence 677778888877776653 456667777777777 6 88888888887653 335567888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCC
Q 004938 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179 (722)
Q Consensus 100 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 179 (722)
+|.++|+++.+..+. +...+..+...+...|+.++|...+..+.+... ........++..|.+.|++++|.++++.+.
T Consensus 381 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 381 KAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 888888888775322 445566667777788888888888888877652 234455667778888888888888888775
Q ss_pred C---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHH
Q 004938 180 Y---RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256 (722)
Q Consensus 180 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 256 (722)
. .+...|+.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|+++.|.+.++.+++.+ +.+..++
T Consensus 459 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 536 (899)
T TIGR02917 459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAI 536 (899)
T ss_pred HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHH
Confidence 3 355568888888888888888888888887642 3345566677777788888888888888887764 3467777
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHHHHHhccCCC---CcchHHHHHHHHHhcCC
Q 004938 257 STLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK---DLICWSAMISGYAENNH 330 (722)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~ 330 (722)
..+...|.+.|+.++|...|+++... +...+..++..|.+.|++++|...++.+... +...|..+...|...|+
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 88888888888888888888877433 4456677788888888888888888877432 45678888888888888
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410 (722)
Q Consensus 331 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 410 (722)
+++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.
T Consensus 617 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888887653 3345567777777788888888888888877653 44567777788888888888888888887
Q ss_pred cCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc
Q 004938 411 MRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487 (722)
Q Consensus 411 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 487 (722)
+.+ .+...|..+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+ ..+.+.
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~ 770 (899)
T TIGR02917 695 LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDA 770 (899)
T ss_pred HHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH
Confidence 764 35566777777788888888888888887774 45556677777778888888888888887776 345566
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM-PF-APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
..+..+...|.+.|++++|.+.|+++ .. +++..+++.+...+...|+ ++|+..+++++++.|+++..+..++.+|..
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 77777788888888888888888776 22 3356677777777777777 668888888887777777777777777777
Q ss_pred CCCcchHHHHHHHHHhCCC
Q 004938 566 DKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 566 ~g~~~~a~~~~~~m~~~g~ 584 (722)
.|++++|.++++++.+.+.
T Consensus 850 ~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAP 868 (899)
T ss_pred cCCHHHHHHHHHHHHhhCC
Confidence 8888888888877777654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.7e-31 Score=314.82 Aligned_cols=541 Identities=15% Similarity=0.062 Sum_probs=379.5
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCch
Q 004938 23 SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIP---APPSRVSNKFIRAISWSHRPK 99 (722)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~ 99 (722)
++...+...+..+++... . ....+..+...+.. . |+++.|...|+... +.+...+..+...+.+.|+++
T Consensus 275 ~~~~~A~~~~~~~l~~~~---~-~~~~~~~~~~~~~~--~--g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 346 (899)
T TIGR02917 275 KNYEDARETLQDALKSAP---E-YLPALLLAGASEYQ--L--GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVD 346 (899)
T ss_pred cCHHHHHHHHHHHHHhCC---C-chhHHHHHHHHHHH--c--CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH
Confidence 566666666666665543 1 12222222333334 4 77888877776542 234455667777777888888
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCC
Q 004938 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179 (722)
Q Consensus 100 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 179 (722)
+|+..+..+..... .+...+..+...+.+.|+.++|.++++.+.+.. +.+...+..+...+...|++++|.+.|+.+.
T Consensus 347 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 424 (899)
T TIGR02917 347 EAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAA 424 (899)
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 88888877776532 245566677777777788888888887777654 3355666777777777888888888777665
Q ss_pred CC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHH
Q 004938 180 YR---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ 256 (722)
Q Consensus 180 ~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 256 (722)
.. +...+..++..+.+.|++++|+++++.+... .+++..++..+...+...|+++.|.+.+..+++.. +.+...+
T Consensus 425 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 502 (899)
T TIGR02917 425 QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAA 502 (899)
T ss_pred hhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHH
Confidence 32 2334566777777888888888888777654 34456677777777777888888888888777654 3355667
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHHHHHhccCCC---CcchHHHHHHHHHhcCC
Q 004938 257 STLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK---DLICWSAMISGYAENNH 330 (722)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~ 330 (722)
..+...+.+.|++++|.+.|+++... +..++..+...+.+.|+.++|...|+++... +...+..++..|...|+
T Consensus 503 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 503 ANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCC
Confidence 77777788888888888888777532 4566777777777888888888887776333 44566677777888888
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410 (722)
Q Consensus 331 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 410 (722)
+++|+.+++++.... +.+..++..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...|++
T Consensus 583 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 583 LKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888777643 4456677777777778888888888887777653 34556677777778888888888888877
Q ss_pred cCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc
Q 004938 411 MRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487 (722)
Q Consensus 411 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 487 (722)
+.+ .+..+|..++..+...|++++|..+++.+...+ +++...+..+...+...|++++|.+.|+.+... .|+.
T Consensus 661 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~ 736 (899)
T TIGR02917 661 ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSS 736 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCc
Confidence 653 346677777778888888888888888777753 344556666777777788888888888777652 3444
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM-P-FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
..+..++.++.+.|++++|.+.++++ . .+.+..++..+...|...|+.++|...|+++++..|+++..+..++.+|..
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE 816 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 66777777788888888888777776 2 233566777777777778888888888888888888777777788888888
Q ss_pred CCCcchHHHHHHHHHhC
Q 004938 566 DKRWQDVGELRKSMKER 582 (722)
Q Consensus 566 ~g~~~~a~~~~~~m~~~ 582 (722)
.|+ ++|..+++++.+.
T Consensus 817 ~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 817 LKD-PRALEYAEKALKL 832 (899)
T ss_pred cCc-HHHHHHHHHHHhh
Confidence 887 7777777777654
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=1.8e-33 Score=234.08 Aligned_cols=106 Identities=55% Similarity=1.009 Sum_probs=97.9
Q ss_pred cccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCcccCCcccccccchHHH--------hHhhhhchHHHHH
Q 004938 589 ACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEK--------REVILWHSEKLAL 660 (722)
Q Consensus 589 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~la~ 660 (722)
||||+++ |.|.+||.+||+. ++..++...||.|++..++|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899876 9999999999987 566777889999999999998888766 5688999999999
Q ss_pred HHHhhcCCCCCcEEEEccc-ccCcchhHHHHHHhhhcCceEEEecCCcccccc
Q 004938 661 CYGLISSKKDSCIRIVKNL-RVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYK 712 (722)
Q Consensus 661 ~~~~~~~~~~~~~~i~~nl-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 712 (722)
||||+++ +|+||+ |||+|||+++|+||+++||+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=2.5e-23 Score=247.56 Aligned_cols=540 Identities=11% Similarity=0.049 Sum_probs=318.3
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCC--CCcc-hH--------------
Q 004938 23 SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA--PPSR-VS-------------- 85 (722)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~--~~~~-~~-------------- 85 (722)
++.+.+.+....++... +.++.++..+...+.. . |+.+.|.+.+++..+ |+.. .+
T Consensus 42 ~~~d~a~~~l~kl~~~~----p~~p~~~~~~~~~~l~--~--g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 42 HREDLVRQSLYRLELID----PNNPDVIAARFRLLLR--Q--GDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred CChHHHHHHHHHHHccC----CCCHHHHHHHHHHHHh--C--CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchh
Confidence 56667777777666554 4577888888888877 7 999999999987633 3322 22
Q ss_pred --HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 004938 86 --NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRF-SFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162 (722)
Q Consensus 86 --~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 162 (722)
-.+...+.+.|++++|++.|+.+.+... |+.. ............++.++|...++.+++.. +.+...+..+...+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll 191 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLL 191 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 2334468889999999999999987532 2321 11111122234589999999999999875 55677888999999
Q ss_pred HhCCCHHHHHHHHhcCCCCCcc------cH-----------------HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh
Q 004938 163 GACGKILDARLMFDKMSYRDIV------PW-----------------SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM 219 (722)
Q Consensus 163 ~~~g~~~~A~~~f~~m~~~~~~------~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 219 (722)
...|+.++|+..|+++...... .| ...+..+-.....+.|...+..+......|+..
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 9999999999999987432110 01 111111111111223333333332221112211
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCc-----hHHHH-----
Q 004938 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL-----VVSTA----- 289 (722)
Q Consensus 220 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~----- 289 (722)
. ...-..+...|++++|...++.+++.. +.+..++..|...|.+.|++++|...|++..+.+. ..|..
T Consensus 272 ~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 272 A-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred H-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 1 111223344555555555555555542 22445555555555555555555555555532211 11111
Q ss_pred -------HHHHHHhcCCHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCC-hhhHH----
Q 004938 290 -------MVSGYSRAGQVEDARLIFDQMVEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD-KVTML---- 354 (722)
Q Consensus 290 -------li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~---- 354 (722)
....+.+.|++++|+..|++.... +...+..+...+...|++++|++.|++..+. .|+ ...+.
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 122344555555555555554322 2334444555555555555555555555543 222 22222
Q ss_pred --------------------------------------HHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 004938 355 --------------------------------------SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396 (722)
Q Consensus 355 --------------------------------------~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 396 (722)
.....+...|++++|.+.++.+++.. +.+..++..+...|.
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 22333445566666666666666543 234455556666666
Q ss_pred hcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHhc
Q 004938 397 KCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV---------TFIGVLYACSHA 464 (722)
Q Consensus 397 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~ 464 (722)
+.|++++|...|+++.+ .+...+..+...+...|+.++|+..++++......++.. .+..+...+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 66666666666665532 233344444444455666666666665543321111111 122334556667
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 004938 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAA 542 (722)
Q Consensus 465 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 542 (722)
|+.++|.++++ ..+++...+..+.+.|.+.|++++|++.+++. ...| +...+..+...+...|++++|+..+
T Consensus 587 G~~~eA~~~l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777665 12455566777888888888888888888887 4455 4677888888888888888888888
Q ss_pred HHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 543 KQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 543 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
+++++..|+++..+..++.++...|++++|.++++.+.+..
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 88888888888888888888888888888888888887653
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.6e-21 Score=232.29 Aligned_cols=539 Identities=12% Similarity=0.017 Sum_probs=393.7
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCC--C-CcchHHHHHHHHHhCCCch
Q 004938 23 SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA--P-PSRVSNKFIRAISWSHRPK 99 (722)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~ 99 (722)
+....+.+.+..++.... ++..+...+....... . |+.++|...|+++.. | +...+..+...+...|+.+
T Consensus 126 g~~~eA~~~~~~~l~~~p----~~~~la~~y~~~~~~~-~--g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 126 GRTEEALASYDKLFNGAP----PELDLAVEYWRLVAKL-P--AQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred CCHHHHHHHHHHHccCCC----CChHHHHHHHHHHhhC-C--ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence 667777777777765443 3332211122222221 3 889999999987643 3 4556788888899999999
Q ss_pred HHHHHHHHHHHCCCCC----------------Cccc---HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 004938 100 HALKVFLKMLNEGLTI----------------DRFS---FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160 (722)
Q Consensus 100 ~a~~~~~~m~~~g~~p----------------~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 160 (722)
+|++.|+++....... +... +...+..+-....+..+...+....+....|+.. ...+..
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~ 277 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGL 277 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHH
Confidence 9999999986542110 0000 1111111111122334444554443332233222 223456
Q ss_pred HHHhCCCHHHHHHHHhcCCC--C-CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHhHH------------HHH
Q 004938 161 MYGACGKILDARLMFDKMSY--R-DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP-DEMVL------------SKI 224 (722)
Q Consensus 161 ~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~------------~~l 224 (722)
.+...|++++|+..|++... | +...+..+...|.+.|++++|+..|++..+..... +...+ ...
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 67789999999999998754 3 55678999999999999999999999988753221 11111 122
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHH
Q 004938 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVE 301 (722)
Q Consensus 225 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 301 (722)
...+.+.|++++|...++.+++.. +.+...+..+...|.+.|++++|.+.|++..+. +...+..+...|. .++.+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHH
Confidence 345678899999999999999975 346778888999999999999999999999653 4456667777774 56789
Q ss_pred HHHHHHhccCCCC------------cchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCchH
Q 004938 302 DARLIFDQMVEKD------------LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD-KVTMLSVISACAHLGVLDQ 368 (722)
Q Consensus 302 ~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 368 (722)
+|...++.+.... ...+..+...+...|++++|++.|++.++. .|+ ...+..+...+.+.|++++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 9999998775431 224556777888999999999999999885 454 4566778888999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----Ch---------HHHHHHHHHHHHcCCHHHH
Q 004938 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR----NV---------ISWTSMINAFAIHGDARNA 435 (722)
Q Consensus 369 a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A 435 (722)
|...++.+++.. +.+...+..+...+.+.|+.++|...++.+... +. ..+..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 999999998753 345555556666778899999999999988642 11 1123456678899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 004938 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-P 514 (722)
Q Consensus 436 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 514 (722)
+.+++. .+++...+..+...+.+.|++++|+..|+.+.+ ..|.+...+..++.+|...|++++|++.++.. .
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 999872 244555677888899999999999999999997 34556788999999999999999999999987 4
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc------hHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 515 FAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG------ALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 515 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
..|+ ...+..+..++...|++++|...++++++..|+++. .+..++.++...|++++|...++....
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4554 567777888899999999999999999998776543 555679999999999999999998864
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=8.6e-20 Score=207.49 Aligned_cols=497 Identities=11% Similarity=-0.002 Sum_probs=360.6
Q ss_pred CChHHHHHHhccC---CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 004938 65 SSLYYALSIFSQI---PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHG 141 (722)
Q Consensus 65 g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 141 (722)
|+++.|...|+.. .+.+..++..|...|.+.|+.++|+..+++..+. .|+...|..++..+ ++.++|..+++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHH
Confidence 9999999999864 3335667889999999999999999999999886 35555555544333 88889999999
Q ss_pred HHHHhCCCCchhhHHHHHHH--------HHhCCCHHHHHHHHhcCCCCC--ccc-HHHHHHHHHhCCChhHHHHHHHHHH
Q 004938 142 LGTKLGFGSDPFVQTGLVGM--------YGACGKILDARLMFDKMSYRD--IVP-WSVMIDGYFQNGLFDEVLNLFEEMK 210 (722)
Q Consensus 142 ~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~f~~m~~~~--~~~-~~~li~~~~~~g~~~~A~~~~~~m~ 210 (722)
++.+.. +.+..++..+... |.+.+...+|++ .+...++ ... .-.+...|.+.|++++|++++.++.
T Consensus 133 ~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 133 ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999875 4455666666665 887777777776 3333444 333 3344889999999999999999999
Q ss_pred HCCCCCCHhHHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhccc-----CCc
Q 004938 211 MSNVEPDEMVLSKILSACSR-AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL-----KNL 284 (722)
Q Consensus 211 ~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~ 284 (722)
+.+.. +..-...+-.+|.. .++ +.+..++.. .+..++.++..+++.|.+.|+.++|.++++++.. ++.
T Consensus 210 k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 210 QQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred hcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 88533 34445566667776 366 777777442 3446889999999999999999999999988832 111
Q ss_pred hHHHHH------------------------------HHHH----------------------------------------
Q 004938 285 VVSTAM------------------------------VSGY---------------------------------------- 294 (722)
Q Consensus 285 ~~~~~l------------------------------i~~~---------------------------------------- 294 (722)
.+|--+ +.-+
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 222111 1111
Q ss_pred -----------------------HhcCCHHHHHHHHhccCCC--C----cchHHHHHHHHHhcCC---chHHHHH-----
Q 004938 295 -----------------------SRAGQVEDARLIFDQMVEK--D----LICWSAMISGYAENNH---PQEALKL----- 337 (722)
Q Consensus 295 -----------------------~~~g~~~~A~~~f~~~~~~--~----~~~~~~li~~~~~~g~---~~~A~~~----- 337 (722)
.+.|+.++|.++|+..... + ...-+-++..|...+. ..+++.+
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 5667777788877776441 1 1233356666666655 2333332
Q ss_pred -----------------HHHHHh-CCCCC---ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 004938 338 -----------------FNEMQV-CGMKP---DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396 (722)
Q Consensus 338 -----------------~~~m~~-~g~~p---~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 396 (722)
+..... .+..| +...+..+..++.. ++.++|...+....... |+......+...+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~ 520 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAY 520 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHH
Confidence 111111 11123 44555666655555 88888999777777653 55444444555557
Q ss_pred hcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 004938 397 KCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREI 473 (722)
Q Consensus 397 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~ 473 (722)
..|++++|...|+++.. ++...+..+...+.+.|+.++|...|++..+. .|+.. .+..+.......|++++|...
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 89999999999998764 44556777788889999999999999999885 35543 333444455667999999999
Q ss_pred HHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
++...+ ..|+...|..+..++.+.|++++|+..+++. ...|+ ...+..+..++...|+.++|+..++++++++|+
T Consensus 599 ~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 599 LTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 999886 3467888999999999999999999999988 56665 567788888899999999999999999999999
Q ss_pred CCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 552 HDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
++..+..++.+|...|++++|...+++..+..
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999987643
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.7e-21 Score=195.93 Aligned_cols=384 Identities=15% Similarity=0.156 Sum_probs=302.3
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-hHHHHHHH
Q 004938 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP-DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA-HLQSTLIT 261 (722)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~li~ 261 (722)
.+|..+...+-..|++++|+.+++.|.+. +| ....|..+..++...|+.+.|.+.+...++. .|+. ...+-+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 34555666666666666666666666553 33 3345566666666666666666666666654 2322 23334445
Q ss_pred HHHhcCChHHHHHHHHhcccCC---chHHHHHHHHHHhcCCHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCchHHH
Q 004938 262 MYANCGCMDMAKGLFDKVLLKN---LVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL---ICWSAMISGYAENNHPQEAL 335 (722)
Q Consensus 262 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~ 335 (722)
.....|++++|...+.+.++.+ .+.|+.|...+..+|++..|+..|++...-|+ .+|-.|...|-..+.+++|+
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 5555677777777776664432 46788888888888888888888988866554 57888999999999999999
Q ss_pred HHHHHHHhCCCCCC-hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 004938 336 KLFNEMQVCGMKPD-KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR- 413 (722)
Q Consensus 336 ~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 413 (722)
..|.+.... .|+ .+.+..+...|...|.++.|+..+++.++.. +.-...|+.|..++-..|++.+|.+.|++...
T Consensus 273 s~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 273 SCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999888764 565 4567777777889999999999999998863 33367899999999999999999999998775
Q ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC-cch
Q 004938 414 --RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK-YEH 489 (722)
Q Consensus 414 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~ 489 (722)
....+.+.|...|...|..++|..+|....+ +.|.- ..++.|...|-+.|++++|+..+++..+ +.|+ ...
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda 424 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADA 424 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHH
Confidence 3467889999999999999999999999888 67774 4789999999999999999999999874 6776 578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCC
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 567 (722)
|+.|...|...|+.+.|...+.+. .+.|. ....+.|...|...|++.+|+..|+.+++++|+.+.+|.+++....-..
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 999999999999999999999887 77776 5788999999999999999999999999999999999999999888888
Q ss_pred CcchHHHHHHHH
Q 004938 568 RWQDVGELRKSM 579 (722)
Q Consensus 568 ~~~~a~~~~~~m 579 (722)
+|.+-.+.++++
T Consensus 505 dw~D~d~~~~kl 516 (966)
T KOG4626|consen 505 DWTDYDKRMKKL 516 (966)
T ss_pred cccchHHHHHHH
Confidence 888754444443
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.3e-18 Score=198.04 Aligned_cols=482 Identities=11% Similarity=0.004 Sum_probs=347.5
Q ss_pred HHHHHHHHH--hCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 004938 85 SNKFIRAIS--WSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162 (722)
Q Consensus 85 ~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 162 (722)
+--++.++. ..|++++|++.|+...+..+. +...+..+...+...|+.++|....++.++.. +.|...+..| ..+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i 121 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI 121 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh
Confidence 344444443 459999999999999986544 46778888899999999999999999999874 3445555544 322
Q ss_pred HhCCCHHHHHHHHhcCCC--C-CcccHHHHHHH--------HHhCCChhHHHHHHHHHHHCCCCCCHhHHHHH-HHHHHc
Q 004938 163 GACGKILDARLMFDKMSY--R-DIVPWSVMIDG--------YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI-LSACSR 230 (722)
Q Consensus 163 ~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~ 230 (722)
++.++|..+++++.. | +...+..+... |.+. ++|.+.++ .......|+..+.... ...|..
T Consensus 122 ---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred ---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHH
Confidence 899999999999864 3 33344444444 6665 55555555 4443344556655555 889999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhc
Q 004938 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN-CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309 (722)
Q Consensus 231 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 309 (722)
.++++.+..++..+.+.+. .+......|..+|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|.+++++
T Consensus 195 l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 9999999999999999974 456667778888888 477 9999998876667899999999999999999999999998
Q ss_pred cCCC-----CcchH---------------------------HH---HHHH------------------------------
Q 004938 310 MVEK-----DLICW---------------------------SA---MISG------------------------------ 324 (722)
Q Consensus 310 ~~~~-----~~~~~---------------------------~~---li~~------------------------------ 324 (722)
+..- +..+| .. ++..
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 352 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVS 352 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhc
Confidence 7321 00000 00 0111
Q ss_pred ---------------------------------HHhcCCchHHHHHHHHHHhC-C-CCCChhhHHHHHHHHHccCC---c
Q 004938 325 ---------------------------------YAENNHPQEALKLFNEMQVC-G-MKPDKVTMLSVISACAHLGV---L 366 (722)
Q Consensus 325 ---------------------------------~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~g~---~ 366 (722)
..+.|+.++|.++|++.... + ..++.....-++..+.+.+. .
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred cccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 23455666666666665541 1 12222233356666665544 2
Q ss_pred hHHHH----------------------HHHHHHHc-CC-CC--ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHH
Q 004938 367 DQAQR----------------------IHLYIDKN-AF-GG--DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWT 420 (722)
Q Consensus 367 ~~a~~----------------------i~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 420 (722)
..+.. ........ +. ++ +...+..+..++.. |+.++|...|.+.....+..++
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~ 511 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ 511 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH
Confidence 22211 12222221 11 33 56778888888887 8999999988776542223444
Q ss_pred HHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH
Q 004938 421 SMINA--FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498 (722)
Q Consensus 421 ~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 498 (722)
.+..+ +...|++++|+..|+++... .|+...+..+..++.+.|+.++|.++++...+. .++....+..+...+.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~ 587 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence 44444 46899999999999998663 566666777788899999999999999999873 2333344444444555
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHH
Q 004938 499 RANLLREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 499 ~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
+.|++++|...+++. ...|+...|..+..++.+.|+.++|+..++++++++|+++..+..++.++...|++++|...++
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 669999999999988 6778888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 004938 578 SMKERG 583 (722)
Q Consensus 578 ~m~~~g 583 (722)
...+..
T Consensus 668 ~AL~l~ 673 (987)
T PRK09782 668 RAHKGL 673 (987)
T ss_pred HHHHhC
Confidence 987754
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.9e-19 Score=181.34 Aligned_cols=417 Identities=14% Similarity=0.153 Sum_probs=341.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC
Q 004938 156 TGLVGMYGACGKILDARLMFDKMSYRDIV---PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232 (722)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 232 (722)
..|..-..+.|++.+|++.-...-+.|.. ..-.+-.++.+..+.+....--....+. ..--..+|..+.+.+-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhc
Confidence 44555566889999999877655443322 1222334566666666655443333332 2334578999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchH---HHHHHHHHHhcCCHHHHHHHHhc
Q 004938 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVV---STAMVSGYSRAGQVEDARLIFDQ 309 (722)
Q Consensus 233 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~f~~ 309 (722)
+++.|...+..+++.. +..+..|..+..++...|+.+.|...|...++-|... .+.+.......|++++|...+.+
T Consensus 131 ~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 131 QLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred hHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 9999999999999874 3367889999999999999999999999887655432 33455566678999999998887
Q ss_pred cCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCCh
Q 004938 310 MVEKD---LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD-KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385 (722)
Q Consensus 310 ~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~ 385 (722)
..+.+ .++|+.|...+-.+|+...|+..|++.... .|+ ...|..+...+...+.++.|...+..+.... +...
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A 286 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHA 286 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccch
Confidence 75543 578999999999999999999999999874 555 3568888888999999999999888877642 3346
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 004938 386 RVNNAIIDMYAKCGSLESAREVFERMRR--RN-VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLYAC 461 (722)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 461 (722)
.++..+...|...|.+|.|...|++..+ |+ ...|+.|..++-..|+..+|...|.+.+. +.|+. ...+.|...+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHH
Confidence 6677788889999999999999999875 44 46899999999999999999999999988 57775 4789999999
Q ss_pred HhcCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 004938 462 SHAGLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELA 538 (722)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 538 (722)
...|.+++|..+|....+ +.|. ....+.|...|-.+|++++|+..+++. .++|+ ...++.+...|...|+.+.|
T Consensus 365 ~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 999999999999998875 3444 577899999999999999999999988 88897 47999999999999999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...+.+++..+|--..++.+|+.+|...|+..+|+.-++...+.
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999988764
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=4.8e-18 Score=190.19 Aligned_cols=418 Identities=14% Similarity=0.048 Sum_probs=288.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHcc
Q 004938 155 QTGLVGMYGACGKILDARLMFDKMS--YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP-DEMVLSKILSACSRA 231 (722)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~ 231 (722)
+..+...|.+.|++++|+..|++.. .|+...|..+..+|.+.|++++|++.+....+. .| +...+..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 4455667777788888888887654 355566777777777888888888888777664 33 345666777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccC
Q 004938 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311 (722)
Q Consensus 232 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 311 (722)
|++++|..-+..+...+...+... ..++..+.+......+...++.- ..+...+..+.. |....+...+..-++...
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 888877776665544422212221 11222111111123333333221 122233333322 222111111111122211
Q ss_pred CCCc---chHHHHHHHH---HhcCCchHHHHHHHHHHhCC-CCC-ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCC
Q 004938 312 EKDL---ICWSAMISGY---AENNHPQEALKLFNEMQVCG-MKP-DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383 (722)
Q Consensus 312 ~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~ 383 (722)
+.+. ..+..+...+ ...+++++|++.|++..+.+ ..| +...+..+...+...|++++|...++.+++.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 1111 1121121111 23478999999999998765 234 34567777777889999999999999998863 33
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLY 459 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 459 (722)
....|..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++.++. .|+ ...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHH
Confidence 466788889999999999999999998764 45788999999999999999999999999884 565 456777888
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNV-------V-IWGSLMAACR 530 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-------~-~~~~ll~~~~ 530 (722)
++.+.|++++|...|+...+ ..+.+...|+.+..+|...|++++|++.|++. ...|+. . .++..+..+.
T Consensus 442 ~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 99999999999999999987 44556788999999999999999999999986 444431 1 1222222344
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..|++++|...++++++++|++...+..++.+|...|++++|.+.+++..+.
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4699999999999999999999889999999999999999999999998764
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.5e-18 Score=184.42 Aligned_cols=268 Identities=13% Similarity=0.112 Sum_probs=178.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPD---KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
+|..+...+...|++++|+.+++.+...+..++ ..++..+...+...|++++|..++..+.+.. +.+..+++.++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 445555555555555555555555554321111 1234445555555566666666665555432 234455566666
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 004938 394 MYAKCGSLESAREVFERMRRRN--------VISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHA 464 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 464 (722)
.|.+.|++++|.+.|+.+.+.+ ...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+.+.
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHC
Confidence 6666666666666666654311 123455666777788888888888887764 344 34666677778888
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004938 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAK 543 (722)
Q Consensus 465 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 543 (722)
|++++|.++|+++.+. ........+..++.+|.+.|++++|.+.++++ ...|+...+..+...+.+.|++++|...++
T Consensus 228 g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 228 GDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred CCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888887752 11111355677888888888888888888887 456777667888888999999999999999
Q ss_pred HHHccCCCCCchHHHHHHHhhh---CCCcchHHHHHHHHHhCCCccCCc
Q 004938 544 QLLQLDPDHDGALVLLSNIYAK---DKRWQDVGELRKSMKERGILKERA 589 (722)
Q Consensus 544 ~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 589 (722)
++++..|++.. +..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 307 ~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 307 EQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99999998764 4444444432 568999999999999999988886
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=4.5e-18 Score=180.71 Aligned_cols=298 Identities=10% Similarity=0.043 Sum_probs=140.9
Q ss_pred HHhCCCHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHccCChH
Q 004938 162 YGACGKILDARLMFDKMSYR---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD---EMVLSKILSACSRAGNLS 235 (722)
Q Consensus 162 ~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~ 235 (722)
+...|++++|...|+++... +..+|..+...+.+.|++++|+.+++.+...+..++ ..++..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 44556666666666666432 223455566666666666666666666655322111 123445555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCc
Q 004938 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315 (722)
Q Consensus 236 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~ 315 (722)
.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.++++...+...... ...
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------------------~~~ 180 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-----------------------EIA 180 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-----------------------HHH
Confidence 5655555555432 2344455555555555555555555555543221100000 000
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 395 (722)
..|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+.+.|++++|.+++..+.+.+......+++.++..|
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 122334444445555555555555554431 1122333444444445555555555555544432111123344455555
Q ss_pred HhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHH
Q 004938 396 AKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH---AGLVDEG 470 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a 470 (722)
.+.|++++|...++++.+ |+...+..++..+.+.|++++|+.+|+++.+. .|+..++..++..+.. .|+.+++
T Consensus 260 ~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhH
Confidence 555555555555554432 33334444555555555555555555555442 4555555544444332 2345555
Q ss_pred HHHHHHhHhhcCCCCCc
Q 004938 471 REIFASMTNEYNIPPKY 487 (722)
Q Consensus 471 ~~~~~~~~~~~~~~~~~ 487 (722)
..+++.+.++ ++.|++
T Consensus 338 ~~~~~~~~~~-~~~~~p 353 (389)
T PRK11788 338 LLLLRDLVGE-QLKRKP 353 (389)
T ss_pred HHHHHHHHHH-HHhCCC
Confidence 5555555542 344443
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=1.2e-16 Score=182.29 Aligned_cols=400 Identities=11% Similarity=0.040 Sum_probs=236.2
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHhcCCC-C--CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 004938 151 DPFVQTGLVGMYGACGKILDARLMFDKMSY-R--DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227 (722)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 227 (722)
+.....-.+......|+.++|++++.+... . +...+..+...+...|++++|.++|++..+.. +.+...+..+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 333444455556666777777777666543 1 22236666666777777777777777665531 2234445555556
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHH
Q 004938 228 CSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDAR 304 (722)
Q Consensus 228 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 304 (722)
+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++... +...+..+...+.+.|..++|+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 666677777777776666652 33444 666666666666666666666665332 2233334444444455555555
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH-----HccCCc---hHHHHHHHHH
Q 004938 305 LIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC-----AHLGVL---DQAQRIHLYI 376 (722)
Q Consensus 305 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-----~~~g~~---~~a~~i~~~~ 376 (722)
..++.... ++.....+ . .......+... ...+++ ++|.+.++.+
T Consensus 171 ~~l~~~~~-~p~~~~~l-------------------------~--~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 171 GAIDDANL-TPAEKRDL-------------------------E--ADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred HHHHhCCC-CHHHHHHH-------------------------H--HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 55544433 11100000 0 00000111111 011122 4555555555
Q ss_pred HHc-CCCCChh-HH-HH---HHHHHHhcCCHHHHHHHHHhcCCCC---h-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004938 377 DKN-AFGGDLR-VN-NA---IIDMYAKCGSLESAREVFERMRRRN---V-ISWTSMINAFAIHGDARNALIFFNKMKDES 446 (722)
Q Consensus 377 ~~~-~~~~~~~-~~-~~---li~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 446 (722)
.+. ...|+.. .+ .. .+..+...|++++|...|+.+.+.+ + ..-..+...|...|++++|+..|+++...
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~- 301 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH- 301 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc-
Confidence 543 1122211 11 01 1223345677788888887776521 1 11122456777788888888888877653
Q ss_pred CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcC----------CCCC---cchHHHHHHHHHhcCCHHHHHH
Q 004938 447 IDPN-----GVTFIGVLYACSHAGLVDEGREIFASMTNEYN----------IPPK---YEHYGCMVDLFGRANLLREALE 508 (722)
Q Consensus 447 ~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~A~~ 508 (722)
.|. ......+..++...|++++|.++++.+..... -.|+ ...+..+..++...|++++|++
T Consensus 302 -~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 302 -PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred -CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 232 23455556677788888888888887775210 0122 1234567778888899999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 509 LVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 509 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
.++++ ...| +...+..+...+...|++++|+..++++++++|++...+..++..+...|+|++|..+++.+.+..
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99887 3344 467888888888899999999999999999999998888888888999999999999998887643
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.6e-16 Score=177.33 Aligned_cols=354 Identities=10% Similarity=0.013 Sum_probs=210.3
Q ss_pred hCCCHHHHHHHHhcCCCC------CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHH
Q 004938 164 ACGKILDARLMFDKMSYR------DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYG 237 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 237 (722)
+..+++.---+|..-++. +......++..+.+.|++++|..+++........+ ...+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 445555555555554432 22234556777788888888888888887653332 33444444555667888888
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcch
Q 004938 238 EAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLIC 317 (722)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~ 317 (722)
...++.+++.. +.+...+..+...+.+.|++++|...|++.... ...+...
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l----------------------------~P~~~~a 146 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA----------------------------FSGNSQI 146 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------CCCcHHH
Confidence 88888887764 335666777777788888888888776665321 1113334
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 004938 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397 (722)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 397 (722)
|..+...+...|++++|...++.+.... |+.......+..+...|++++|...+..+++....++......+...+.+
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 4455555555555555555555544332 22211111122344555555555555555443222222333334455556
Q ss_pred cCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 004938 398 CGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARN----ALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDE 469 (722)
Q Consensus 398 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 469 (722)
.|++++|...|++..+ .+...+..+...|...|++++ |+..|++..+ +.|+ ...+..+...+...|++++
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHH
Confidence 6666666666665543 244556666666666666664 6777777766 3454 3456666677777777777
Q ss_pred HHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIW-GSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 470 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
|...++.+.+ ..+.+...+..+..+|.+.|++++|++.++++ ...|+...+ ..+..++...|+.++|...|+++++
T Consensus 303 A~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 303 AIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777765 22334455666777777777777777777766 345554333 3345567777888888888888887
Q ss_pred cCCCCC
Q 004938 548 LDPDHD 553 (722)
Q Consensus 548 ~~p~~~ 553 (722)
..|++.
T Consensus 381 ~~P~~~ 386 (656)
T PRK15174 381 ARASHL 386 (656)
T ss_pred hChhhc
Confidence 777753
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=1.6e-16 Score=181.13 Aligned_cols=415 Identities=11% Similarity=0.018 Sum_probs=289.5
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCC---CCcccHHHHHHH
Q 004938 116 DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY---RDIVPWSVMIDG 192 (722)
Q Consensus 116 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 192 (722)
+..-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++... .+...+..++..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44455666777888999999999999987633 45566788999999999999999999998543 345568888899
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHH
Q 004938 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272 (722)
Q Consensus 193 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 272 (722)
+...|++++|+..+++..+. -+.+.. +..+..++...|+.+.|...++.+++... .+...+..+...+.+.|..+.|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHH
Confidence 99999999999999999876 233444 77788888999999999999999999753 3666777788899999999999
Q ss_pred HHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc---hHHHHHHHHHHhC-CCCC
Q 004938 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHP---QEALKLFNEMQVC-GMKP 348 (722)
Q Consensus 273 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~-g~~p 348 (722)
.+.+++... +...... +. ...+....+- .+.......+++ ++|++.++.+.+. ...|
T Consensus 170 l~~l~~~~~-~p~~~~~-l~-------~~~~~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p 230 (765)
T PRK10049 170 LGAIDDANL-TPAEKRD-LE-------ADAAAELVRL----------SFMPTRSEKERYAIADRALAQYDALEALWHDNP 230 (765)
T ss_pred HHHHHhCCC-CHHHHHH-HH-------HHHHHHHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 999988765 2210000 00 0000000000 000001111222 5566666666543 1122
Q ss_pred Chh-hHH----HHHHHHHccCCchHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------
Q 004938 349 DKV-TML----SVISACAHLGVLDQAQRIHLYIDKNAFG-GDLRVNNAIIDMYAKCGSLESAREVFERMRRRN------- 415 (722)
Q Consensus 349 ~~~-t~~----~ll~~~~~~g~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------- 415 (722)
+.. .+. ..+.++...|++++|+..|+.+.+.+.+ |+ .....+...|...|++++|...|+++.+.+
T Consensus 231 ~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~ 309 (765)
T PRK10049 231 DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS 309 (765)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC
Confidence 221 111 1123344556777777777777665421 21 122224566777777777777777765321
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDES-----------IDPNG---VTFIGVLYACSHAGLVDEGREIFASMTNEY 481 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 481 (722)
...+..+..++...|++++|++.++++.... -.|+. ..+..+...+...|+.++|++.++.+..
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-- 387 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-- 387 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 2334555666777888888888888877631 12332 2345666788899999999999999987
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchH
Q 004938 482 NIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 482 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
..|.+...+..+..++...|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++.+.
T Consensus 388 ~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 388 NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 45667788999999999999999999999988 56676 56677777788899999999999999999999997543
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=9.7e-16 Score=163.21 Aligned_cols=541 Identities=13% Similarity=0.085 Sum_probs=376.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccC----C--CCCcchHHHHHHHHHhCCCc
Q 004938 25 LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQI----P--APPSRVSNKFIRAISWSHRP 98 (722)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~----~--~~~~~~~~~li~~~~~~g~~ 98 (722)
+..+.+.+..+++.++ ..-+++.-..--+|.+ +++..|..+|... | .||+. -.+-.++.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~sp---~Nil~LlGkA~i~ynk-----kdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~ 215 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP---DNILALLGKARIAYNK-----KDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMS 215 (1018)
T ss_pred HHHHHHHHHHHHhhCC---cchHHHHHHHHHHhcc-----ccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccch
Confidence 4455555556666554 3334444444445666 8999999999762 1 13432 2233566789999
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHH---hcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHH
Q 004938 99 KHALKVFLKMLNEGLTIDRFSFPPILKAIA---RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMF 175 (722)
Q Consensus 99 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 175 (722)
+.|+..|.+..+..+. ++.++..|--.-. .......|.+.+...-+.. +.++.+.+.|.+.|.-.|++..+..+.
T Consensus 216 ~~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la 293 (1018)
T KOG2002|consen 216 EKALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLA 293 (1018)
T ss_pred hhHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHH
Confidence 9999999999885431 2222222211111 2234556666666665544 668889999999999999999999988
Q ss_pred hcCCCCC------cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHccCChHHHHHHHHHHHHc
Q 004938 176 DKMSYRD------IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV--LSKILSACSRAGNLSYGEAVHEFIIDN 247 (722)
Q Consensus 176 ~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~ 247 (722)
..+.... ..+|-.+.++|-..|++++|...|.+..+. .||.++ +.-+...+...|+++.+...|+.+.+.
T Consensus 294 ~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 294 EHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 7765432 224778899999999999999999887654 455544 445677889999999999999999987
Q ss_pred CCCCCHhHHHHHHHHHHhcC----ChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCH------HHHHHHHhcc-CCC
Q 004938 248 NVALDAHLQSTLITMYANCG----CMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQV------EDARLIFDQM-VEK 313 (722)
Q Consensus 248 g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~------~~A~~~f~~~-~~~ 313 (722)
. +.+..+...|...|+..+ ..+.|..++.+...+ |...|-.+...|-...-+ ..|..++..- ...
T Consensus 372 ~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~i 450 (1018)
T KOG2002|consen 372 L-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQI 450 (1018)
T ss_pred C-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCC
Confidence 3 556777778888887775 568888888888665 455666666665444332 3344333332 223
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhC---CCCCChh------hHHHHHHHHHccCCchHHHHHHHHHHHcCCCCC
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVC---GMKPDKV------TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~------t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~ 384 (722)
.+...|.+...+...|++++|...|.+.... ...+|.. +--.+....-..++.+.|.++|..+++.. +.-
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~Y 529 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGY 529 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chh
Confidence 5677899999999999999999999988654 2233331 22234445567789999999999998863 222
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYA 460 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a 460 (722)
+..|-.+.-+.-..+...+|...++.... .|+..|+-+...+.....+..|-+-|....+.- ..+|..+..+|.+.
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 33344444333344677788888887764 677788888888888888888888776665421 23677777777775
Q ss_pred HHh------------cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 004938 461 CSH------------AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--PFAPNVVIWGSLM 526 (722)
Q Consensus 461 ~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 526 (722)
|.. .+..++|+++|..+.+ ..|.+...-|-+.-.++..|++.+|.++|.+. ....+..+|-.+.
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla 687 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA 687 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH
Confidence 543 2456788888888876 55667777788888889999999999999887 2223456788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHccC--CCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 527 AACRVHGEIELAEFAAKQLLQLD--PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 527 ~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
..|...|++-.|+++|+..+... .+++.....|+.++.+.|+|.+|.+.........
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 88999999999999999887642 3455677788999999999999988877776543
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=1e-15 Score=171.54 Aligned_cols=435 Identities=11% Similarity=0.023 Sum_probs=281.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCC
Q 004938 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR---DIVPWSVMIDGYFQNGL 198 (722)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~ 198 (722)
.....+.+.|+++.|...|...++. .|+...|..+..+|.+.|++++|+..++...+. +...|..+..+|...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 3445556667777777777776654 455666666777777777777777777665432 33356667777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHh
Q 004938 199 FDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDK 278 (722)
Q Consensus 199 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (722)
+++|+.-|......+- .+......++..... ..+.......++.. +.+...+..+.. |......+.+..-++.
T Consensus 210 ~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 7777776665543311 111111111111111 11222222222221 112222222222 2211111111111111
Q ss_pred cccCCc---hHHHHHHHH---HHhcCCHHHHHHHHhccCCC------CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 004938 279 VLLKNL---VVSTAMVSG---YSRAGQVEDARLIFDQMVEK------DLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346 (722)
Q Consensus 279 ~~~~~~---~~~~~li~~---~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 346 (722)
..+.+. ..+..+... ....+++++|.+.|+...+. +...|+.+...+...|++++|+..|++..+.
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-- 360 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-- 360 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 111111 111111111 12346778888888876532 3456888888899999999999999998875
Q ss_pred CCC-hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHH
Q 004938 347 KPD-KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSM 422 (722)
Q Consensus 347 ~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 422 (722)
.|+ ..+|..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 454 4577788888889999999999999988864 45678888999999999999999999998864 356778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC-cch-------HHHH
Q 004938 423 INAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK-YEH-------YGCM 493 (722)
Q Consensus 423 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~-------~~~l 493 (722)
...+.+.|++++|+..|++.+.. .|+ ...+..+...+...|++++|...|+..... .|+ ... ++..
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHH
Confidence 88999999999999999998874 555 567888888999999999999999998762 222 111 1222
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcch
Q 004938 494 VDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571 (722)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 571 (722)
...+...|++++|.+++++. ...|+ ...+..+...+...|++++|...|++++++.+.....+ ....|.+
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~ 586 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAE 586 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHH
Confidence 23344579999999999986 56665 45788999999999999999999999999887644322 2223446
Q ss_pred HHHHHHHHHh
Q 004938 572 VGELRKSMKE 581 (722)
Q Consensus 572 a~~~~~~m~~ 581 (722)
|.++....++
T Consensus 587 a~~~~~~~~~ 596 (615)
T TIGR00990 587 ATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHH
Confidence 6666555544
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=6.9e-16 Score=172.21 Aligned_cols=321 Identities=9% Similarity=-0.029 Sum_probs=245.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHH
Q 004938 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVED 302 (722)
Q Consensus 223 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 302 (722)
.++..+.+.|+++.|..++..++..... +......++......|++++|...
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~--------------------------- 98 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQV--------------------------- 98 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHH---------------------------
Confidence 3444455556666666665555554322 233333333444445555555555
Q ss_pred HHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCchHHHHHHHHHHH
Q 004938 303 ARLIFDQMVE---KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKP-DKVTMLSVISACAHLGVLDQAQRIHLYIDK 378 (722)
Q Consensus 303 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~ 378 (722)
|+++.. .+...|..+...+.+.|++++|+..|+++... .| +...+..+..++...|++++|...+..+..
T Consensus 99 ----l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 99 ----VNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred ----HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 555533 24567888889999999999999999999875 45 456677788899999999999999998877
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 004938 379 NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR----NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVT 453 (722)
Q Consensus 379 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 453 (722)
.... +...+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|+..|+++.+. .|+ ...
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~ 248 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAAL 248 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHH
Confidence 6432 33344333 3478899999999999987652 2334455667888999999999999999985 455 556
Q ss_pred HHHHHHHHHhcCCHHH----HHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 004938 454 FIGVLYACSHAGLVDE----GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMA 527 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 527 (722)
+..+...+...|++++ |...|+.+.+ ..|.+...+..+..++.+.|++++|+..+++. ...|+ ...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 7788889999999986 8999999987 34556788999999999999999999999988 45565 567888889
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 528 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
++...|++++|...++++++.+|++...+..++.++...|++++|.+.++...+..
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988777778899999999999999999987654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=5.7e-15 Score=165.03 Aligned_cols=421 Identities=10% Similarity=0.070 Sum_probs=242.6
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHH-H--HHHHHhCCChhHHH
Q 004938 127 IARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV-M--IDGYFQNGLFDEVL 203 (722)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~-l--i~~~~~~g~~~~A~ 203 (722)
..+.|++..|...+.++.+........++ .++..+...|+.++|+..+++...|+...+.. + ...|...|++++|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 56788999999999998876532223344 78888888899999999999888775555443 3 44677779999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC-
Q 004938 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK- 282 (722)
Q Consensus 204 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 282 (722)
++|+++.+.. +-|...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|.+.++++.+.
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999998763 224556667777788889999999888888776 344555555555555566666688888888543
Q ss_pred --CchHHHHHHHHHHhcCCHHHHHHHHhccCCC-CcchHHHH----HHHHHhcC---------C---chHHHHHHHHHHh
Q 004938 283 --NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK-DLICWSAM----ISGYAENN---------H---PQEALKLFNEMQV 343 (722)
Q Consensus 283 --~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~l----i~~~~~~g---------~---~~~A~~~~~~m~~ 343 (722)
+...+..+...+.+.|-...|+++..+-+.- +...+.-+ +.-.++.+ + .+.|+.-++.+..
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 4556677777788888888888777765432 11111111 11111111 1 1234444444332
Q ss_pred C-CCCCCh-hh----HHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---
Q 004938 344 C-GMKPDK-VT----MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR--- 414 (722)
Q Consensus 344 ~-g~~p~~-~t----~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 414 (722)
. +-.|.. .- ..-.+-++...|+..++++.++.+...+.+....+-.++.++|...+++++|..+|..+...
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 1 111221 11 11223345555666666666666655554444445555666666666666666666655321
Q ss_pred ------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCC--HH-HHHHHHHHHHhcCCHHHHHHHH
Q 004938 415 ------NVISWTSMINAFAIHGDARNALIFFNKMKDESI-----------DPN--GV-TFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 415 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~~-t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
+......|.-+|...+++++|..+++++.+.-. .|| -. .+..++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 112234455555566666666666666655200 111 11 2233344455555666666666
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
+.+.. .-|-|......+.+++...|.+.+|++.++.. ...|+ ..+...++.+....+++++|..+.+.+++..|++
T Consensus 440 e~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 440 EDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 55544 33445555555555555566666665555444 33443 2344444445555555555655555555555555
Q ss_pred C
Q 004938 553 D 553 (722)
Q Consensus 553 ~ 553 (722)
+
T Consensus 518 ~ 518 (822)
T PRK14574 518 I 518 (822)
T ss_pred h
Confidence 4
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=3.7e-14 Score=151.38 Aligned_cols=552 Identities=12% Similarity=0.069 Sum_probs=391.4
Q ss_pred HHHhhC-----CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCCCCcchHHHHHHH
Q 004938 17 TAISSC-----SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRA 91 (722)
Q Consensus 17 ~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 91 (722)
.+-++| .+...+..++..++...+ +..+|+.+... ..+.+ + |..+.|...|....+-|...-++++..
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp-~~~aD~rIgig--~Cf~k--l--~~~~~a~~a~~ralqLdp~~v~alv~L 239 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINP-ACKADVRIGIG--HCFWK--L--GMSEKALLAFERALQLDPTCVSALVAL 239 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCc-ccCCCccchhh--hHHHh--c--cchhhHHHHHHHHHhcChhhHHHHHHH
Confidence 344666 567777777777665543 12455544322 22334 6 888998888877655444333433332
Q ss_pred H---HhC---CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhhHHHHHHHHH
Q 004938 92 I---SWS---HRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSD--PFVQTGLVGMYG 163 (722)
Q Consensus 92 ~---~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~ 163 (722)
. ... ..+..++.++...-... .-|+...+.|.+-+.-.++++.+..+...++....... ...|--+..+|-
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 1 112 23455666666655432 22667788888888899999999999998887642211 223556788999
Q ss_pred hCCCHHHHHHHHhcCCCC---C-cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC----ChH
Q 004938 164 ACGKILDARLMFDKMSYR---D-IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG----NLS 235 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~ 235 (722)
..|+++.|...|.+.... + +.++--|...|.+.|+.+.+...|+..... .+-+..|...+-..|+..+ ..+
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHH
Confidence 999999999999876542 2 445677889999999999999999999875 2334556666666666554 456
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhc--------ccCCchHHHHHHHHHHhcCCHHHHHHHH
Q 004938 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV--------LLKNLVVSTAMVSGYSRAGQVEDARLIF 307 (722)
Q Consensus 236 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~f 307 (722)
.|..++....+.- +.|...|-.+..+|-...-+. ++.+|... ....+...|.+...+...|+++.|...|
T Consensus 398 ~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 398 KASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 7777777777664 557777877777776554332 24444333 3346778899999999999999999999
Q ss_pred hccCCC-------Cc------chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHH-HHHHHHHccCCchHHHHHH
Q 004938 308 DQMVEK-------DL------ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML-SVISACAHLGVLDQAQRIH 373 (722)
Q Consensus 308 ~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~i~ 373 (722)
.+.... |. .+-..+...+-..++.+.|.+.|...... .|.-++-- -++......+...+|...+
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 876332 22 12233556667778999999999999885 46554432 2322223456788899888
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHH------------HcCCHHHHH
Q 004938 374 LYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-----RNVISWTSMINAFA------------IHGDARNAL 436 (722)
Q Consensus 374 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~------------~~g~~~~A~ 436 (722)
..+...+ ..++.+++-+.+.|.+...+..|.+-|..+.+ +|+.+.-+|.+.|. ..+..++|+
T Consensus 554 k~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAl 632 (1018)
T KOG2002|consen 554 KDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKAL 632 (1018)
T ss_pred HHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHH
Confidence 8887753 55667777788899999999999887666543 46666656666444 234578899
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---
Q 004938 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--- 513 (722)
Q Consensus 437 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--- 513 (722)
++|.+.++. -+-|...-+.+.-.++..|++.+|..+|..+.+. ......+|-.+...|..+|++..|+++|+..
T Consensus 633 q~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 633 QLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998884 2335567788888899999999999999999984 3345678899999999999999999999876
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh-------------------CCCcchHH
Q 004938 514 -PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK-------------------DKRWQDVG 573 (722)
Q Consensus 514 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------------------~g~~~~a~ 573 (722)
.-..+..+...|..++...|.+.+|.+.+..++.+.|.++....+++-+..+ .+..+.|.
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~ 789 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEAR 789 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 2344678889999999999999999999999999999999877776655443 34567788
Q ss_pred HHHHHHHhCCCc
Q 004938 574 ELRKSMKERGIL 585 (722)
Q Consensus 574 ~~~~~m~~~g~~ 585 (722)
++|..|...+-+
T Consensus 790 r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 790 RLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHhcCCC
Confidence 888888765543
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=2.2e-14 Score=160.33 Aligned_cols=412 Identities=11% Similarity=-0.018 Sum_probs=221.9
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCc--ccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHH
Q 004938 92 ISWSHRPKHALKVFLKMLNEGLTIDR--FSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKIL 169 (722)
Q Consensus 92 ~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 169 (722)
..+.|++..|++.|++..+.. |+. ..+ .++..+...|+.++|...+++.+... +........+...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 346677777777777766543 332 122 55566666677777777666665110 111222222244666667777
Q ss_pred HHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH
Q 004938 170 DARLMFDKMSYR---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIID 246 (722)
Q Consensus 170 ~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 246 (722)
+|+++|+++.+. |...+..++..|...++.++|++.++++... .|+...+..++..+...++...|.+.++.+++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 777777766542 2333555566666667777777777666553 44444443333333334444446666666666
Q ss_pred cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC-CchH--H------HHHHHHH-----HhcCC---HHHHHHHHhc
Q 004938 247 NNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-NLVV--S------TAMVSGY-----SRAGQ---VEDARLIFDQ 309 (722)
Q Consensus 247 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--~------~~li~~~-----~~~g~---~~~A~~~f~~ 309 (722)
.. +.+...+..++..+.+.|-...|.++..+-+.- +... | ..++..- ....+ .+.|+.-++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 63 335566666666667777666666665554311 0000 0 0111000 01111 2223333333
Q ss_pred cCC---CCc---ch----HHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHc
Q 004938 310 MVE---KDL---IC----WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379 (722)
Q Consensus 310 ~~~---~~~---~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~ 379 (722)
+.. +++ .. .--.+-++...|++.++++.|+.|...|.+....+-..+..+|...+.+++|..++..+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 322 111 11 11234456666677777777777766665434446666666777777777777777766553
Q ss_pred C-----CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-------------Ch---HHHHHHHHHHHHcCCHHHHH
Q 004938 380 A-----FGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--R-------------NV---ISWTSMINAFAIHGDARNAL 436 (722)
Q Consensus 380 ~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-------------~~---~~~~~li~~~~~~g~~~~A~ 436 (722)
. .+++......|.-+|...+++++|..+++.+.+ | |. ..+..++..+...|+..+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 2 122233345666666667777777777766653 1 00 12233455566667777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 437 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
+.++++... -+-|......+...+...|.+.+|++.++.+.. -.|-+..+....+..+...|++++|..+.+..
T Consensus 437 ~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 437 KKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 777776653 122444556666666667777777777755443 22333455556666666667777776666555
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=2.6e-12 Score=131.35 Aligned_cols=498 Identities=13% Similarity=0.111 Sum_probs=390.4
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 004938 81 PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160 (722)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 160 (722)
++..|... +.-...+.|.-++.+..+. -|. -.-+.-++++...++.|+.++....+. ++-+..+|.+-..
T Consensus 379 sv~LWKaA----VelE~~~darilL~rAvec--cp~---s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~ 448 (913)
T KOG0495|consen 379 SVRLWKAA----VELEEPEDARILLERAVEC--CPQ---SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAK 448 (913)
T ss_pred hHHHHHHH----HhccChHHHHHHHHHHHHh--ccc---hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHH
Confidence 55566544 3455667788888887764 222 234556778888888999998887664 5677788877776
Q ss_pred HHHhCCCHHHHHHHHhcCC----C----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHc
Q 004938 161 MYGACGKILDARLMFDKMS----Y----RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP--DEMVLSKILSACSR 230 (722)
Q Consensus 161 ~~~~~g~~~~A~~~f~~m~----~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~ 230 (722)
.=-..|+.+...++.++-. . -+...|-.=...+-..|..-.+..+.......|+.- -..||..-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 6677888888888876542 1 123336666666777777777777777777666553 24588888888999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHHHHH
Q 004938 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDARLIF 307 (722)
Q Consensus 231 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f 307 (722)
.+.++-++.+|...++- ++.+..+|...+..--..|..+.-..+|++.... ....|-....-+-..|++..|+.++
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il 607 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVIL 607 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence 99999999999998886 4667788888888778889999999999888543 5567888888888899999999998
Q ss_pred hccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCC
Q 004938 308 DQMVEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD 384 (722)
Q Consensus 308 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~ 384 (722)
.+..+. +...|-+-+.....+.+++.|..+|.+.... .|+...|.--+..---++..++|.++++..++. ++.-
T Consensus 608 ~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f 684 (913)
T KOG0495|consen 608 DQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDF 684 (913)
T ss_pred HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCch
Confidence 887544 4567888888888999999999999998764 567776766666666688999999999988886 4555
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR--R-NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 461 (722)
...|-.+...+-+.++++.|.+.|..-.+ | .+..|-.+...--+.|+.-.|..+|++..-.+ +-|...|...+..=
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRME 763 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHH
Confidence 77888888999999999999999987664 4 45678888888888899999999999987752 33566889999999
Q ss_pred HhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004938 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541 (722)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 541 (722)
.+.|+.++|..+..++.+ ..+.+...|..-|.+..+.++-..+.+.+++.. .|+.+.-++...+....++++|.+.
T Consensus 764 lR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 764 LRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred HHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 577788899999999999888888888888764 4556666677778888899999999
Q ss_pred HHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccCCcccEEEeCCEE
Q 004938 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599 (722)
Q Consensus 542 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~ 599 (722)
|++++..+|++..++..+-..+...|.-++-.++++..... .|..|..|+.+...+
T Consensus 840 f~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 840 FERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKDI 895 (913)
T ss_pred HHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhhH
Confidence 99999999999999999999999999999999999887664 355677776655443
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=2.1e-13 Score=132.50 Aligned_cols=420 Identities=15% Similarity=0.184 Sum_probs=279.9
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHh--cCChHHH-HHHHHHHHHhCCCCchhhHHHH
Q 004938 82 SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIAR--AEGLLEG-MQVHGLGTKLGFGSDPFVQTGL 158 (722)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 158 (722)
+.+=|.|+.. ..+|...++.-+|++|+..|+..+...-..++...+- ..++.-+ .+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3455666654 4577888999999999999887776655555544332 2222222 22333333433 2222222
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHH
Q 004938 159 VGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGE 238 (722)
Q Consensus 159 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 238 (722)
+.|.+.+ ++-+...+...+|..||.|+|+--..+.|.+++++-.....+.+..+||.+|.+..-. .++
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 4465544 4445555677899999999999999999999999999988999999999999886533 348
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhcc----CCCC
Q 004938 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM----VEKD 314 (722)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~----~~~~ 314 (722)
.+..+|+...+.||..|+|+++....+.|+++.|++.+- +++.+| .+|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aal---------------------------qil~EmKeiGVePs 311 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAAL---------------------------QILGEMKEIGVEPS 311 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHH---------------------------HHHHHHHHhCCCcc
Confidence 899999999999999999999999999999999887743 234444 4566
Q ss_pred cchHHHHHHHHHhcCCchH-HHHHHHHHHh----CCCCC----ChhhHHHHHHHHHccCCchHHHHHHHHHHHcC----C
Q 004938 315 LICWSAMISGYAENNHPQE-ALKLFNEMQV----CGMKP----DKVTMLSVISACAHLGVLDQAQRIHLYIDKNA----F 381 (722)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p----~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~----~ 381 (722)
..+|..+|..+++.++..+ |..++.+.+. ..++| |...|...+..|.+..+.+.|.+++....... +
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 7788888888888777644 4555555443 22333 45668888999999999999999988765421 2
Q ss_pred CCC---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004938 382 GGD---LRVNNAIIDMYAKCGSLESAREVFERMRR----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454 (722)
Q Consensus 382 ~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 454 (722)
.|+ ..-|..+....+....++.-...|+.|.. |+..+...++.+....|.++-.-++|..++..|..-+...-
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 222 23455777888888889999999998874 67777777788888888888888888888777654444443
Q ss_pred HHHHHHHHhcC-C--------HHH-----HHHHH-------HHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 455 IGVLYACSHAG-L--------VDE-----GREIF-------ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 455 ~~ll~a~~~~g-~--------~~~-----a~~~~-------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
..++..+++.. . +.. |..++ .++. .........++..-++.|.|+.++|.+++.-.
T Consensus 472 eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 472 EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 33333333322 0 000 00111 1111 12233345667777777888888877776544
Q ss_pred -------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004938 514 -------PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548 (722)
Q Consensus 514 -------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 548 (722)
+..|......-|+.+-.+.++.-.|..+++-+.+.
T Consensus 549 ~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 549 LRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 33344334445556666666677777776666544
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1.1e-14 Score=141.95 Aligned_cols=444 Identities=13% Similarity=0.106 Sum_probs=305.0
Q ss_pred cHHHHH---HHHHhcCChHHHHHHHHHHHHhCCCCchhhH-HHHHHHHHhCCCHHHHHHHHhcCCC--C--C----cccH
Q 004938 119 SFPPIL---KAIARAEGLLEGMQVHGLGTKLGFGSDPFVQ-TGLVGMYGACGKILDARLMFDKMSY--R--D----IVPW 186 (722)
Q Consensus 119 ~~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~f~~m~~--~--~----~~~~ 186 (722)
||+.+. .-|.......+|+..++-+++...-|+.... ..+.+.|.+...+..|++.+..... | + +...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 555544 3344455667888888888887666655432 2344667788889999988754331 1 1 1124
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhH--------HHH
Q 004938 187 SVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL--------QST 258 (722)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--------~~~ 258 (722)
|.+.-.+.+.|.+++|+..|+...+. .||..+-..|+-.+...|+.++.++.|..++.....+|..- -..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44555678899999999999988765 68887766666667778999999999999886533322211 112
Q ss_pred HHHHHHhc---------C--ChHHHHHHHHhccc----CCch---HH----------H--------HHHHHHHhcCCHHH
Q 004938 259 LITMYANC---------G--CMDMAKGLFDKVLL----KNLV---VS----------T--------AMVSGYSRAGQVED 302 (722)
Q Consensus 259 li~~~~~~---------g--~~~~A~~~~~~~~~----~~~~---~~----------~--------~li~~~~~~g~~~~ 302 (722)
|++--.+. . +.+++.-.--++.. ++-. -| . .-..-|.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 22222221 1 12222222222222 2211 01 0 11223689999999
Q ss_pred HHHHHhccCCCCcchH----HHHH-HHHHhcC-CchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHH
Q 004938 303 ARLIFDQMVEKDLICW----SAMI-SGYAENN-HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI 376 (722)
Q Consensus 303 A~~~f~~~~~~~~~~~----~~li-~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~ 376 (722)
|.+++.-...+|..+- |.|- --|.+-| ++..|...-+..+... +-+....+.--+.....|++++|...+.+.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 9999888877654332 2222 2233333 4666666655554321 122222222223334578999999999999
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004938 377 DKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR---RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453 (722)
Q Consensus 377 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 453 (722)
+...-......|| +.-.+-+.|++++|++.|-++. ..+....-.+.+.|-...++..|++++.+.... ++.|...
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 8865444444444 3345778999999999998775 367778888888999999999999999887663 3445667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-H
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACR-V 531 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~-~ 531 (722)
..-|...|-+.|+-.+|.+.+-.--+ -+|.+.++..-|..-|....-+++|+.+|++. -++|+..-|..++..|. +
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 88888999999999999998876544 46678899999999999999999999999998 57899999999998875 6
Q ss_pred cCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCc
Q 004938 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW 569 (722)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 569 (722)
.|++++|..+|+......|++......|..++...|..
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 89999999999999999999999999999998888753
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.6e-12 Score=126.43 Aligned_cols=364 Identities=14% Similarity=0.128 Sum_probs=218.6
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 004938 81 PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160 (722)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 160 (722)
...++..||.++++--..+.|.++|++-.....+.+..+||.+|.+-+ +..++++..+|+.....||.+++|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 334566666666666666666666666665555556666666655433 2223556666666666666666666666
Q ss_pred HHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHH-HHH
Q 004938 161 MYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY-GEA 239 (722)
Q Consensus 161 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~ 239 (722)
..++.|+++.|++ .|++++.+|++-|+.|...+|..+|..+++.++..+ +..
T Consensus 282 c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 282 CAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred HHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 6666666665553 346788899999999999999999999988888754 344
Q ss_pred HHHHHHH----cCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccC
Q 004938 240 VHEFIID----NNVA----LDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV 311 (722)
Q Consensus 240 ~~~~~~~----~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 311 (722)
+..++.. ..+. .|...+..-++.|....+.+-|.++-.-.. .|+- +..|.
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~----------------tg~N------~~~ig 392 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLK----------------TGDN------WKFIG 392 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHH----------------cCCc------hhhcC
Confidence 4444332 2222 245556666777777778777777732221 1110 11111
Q ss_pred C--CCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHH
Q 004938 312 E--KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389 (722)
Q Consensus 312 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~ 389 (722)
. ....-|..+....++....+.-+.+|+.|.-.-+-|+..+...++++....+.++...+++..++..|..-......
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e 472 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE 472 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH
Confidence 1 01234556677778888888888999999887788888999999999888899998888888888776443333322
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChH---HHHHHHHHHHHcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004938 390 AIIDMYAKCGSLESAREVFERMRRRNVI---SWTSMINAFAIHGDARNA-LIFFNKMKDESIDPNGVTFIGVLYACSHAG 465 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 465 (722)
-++..+++.. ..|+.. -+.....-++ -++.++ ...-.+|.+..+.| ...+.++..+.+.|
T Consensus 473 eil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G 536 (625)
T KOG4422|consen 473 EILMLLARDK------------LHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAG 536 (625)
T ss_pred HHHHHHhcCC------------CCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcc
Confidence 2222222211 012211 1111111111 011111 22223455543444 34555556678899
Q ss_pred CHHHHHHHHHHhHhhcCCCCCcchHHHHH---HHHHhcCCHHHHHHHHHhC
Q 004938 466 LVDEGREIFASMTNEYNIPPKYEHYGCMV---DLFGRANLLREALELVETM 513 (722)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~ 513 (722)
..++|.++|..+.+.+.-.|.....++|+ +.-.+......|...++-|
T Consensus 537 ~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 537 RTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999998866555555555566444 4444566666666666655
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=2.2e-10 Score=117.61 Aligned_cols=492 Identities=14% Similarity=0.092 Sum_probs=382.4
Q ss_pred CCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccH
Q 004938 44 SQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPA--P-PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF 120 (722)
Q Consensus 44 ~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 120 (722)
+.++.+|-..+.. -..++|+-++....+ | +.. |.-+|++-.-++.|..+++..++. ++-+...|
T Consensus 377 P~sv~LWKaAVel--------E~~~darilL~rAveccp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IW 443 (913)
T KOG0495|consen 377 PRSVRLWKAAVEL--------EEPEDARILLERAVECCPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIW 443 (913)
T ss_pred CchHHHHHHHHhc--------cChHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHH
Confidence 5677788877773 455668877765422 2 233 444566777788999999999876 66688888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH----HHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCC-----C-CcccHHHHH
Q 004938 121 PPILKAIARAEGLLEGMQVHGLG----TKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY-----R-DIVPWSVMI 190 (722)
Q Consensus 121 ~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~-~~~~~~~li 190 (722)
.+..+.=-+.|+.+...++.+.- ...|+..+..-|-.=...+-+.|..-.+..+...... - --.+|+.-.
T Consensus 444 itaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da 523 (913)
T KOG0495|consen 444 ITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDA 523 (913)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhH
Confidence 88777777788888887777654 3457777777777777777777777777766655432 1 234699999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChH
Q 004938 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMD 270 (722)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 270 (722)
..|.+.+.++-|..+|....+. .+-+...|......--..|..+.-..++..++..- +-....|-....-+-..|++.
T Consensus 524 ~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~ 601 (913)
T KOG0495|consen 524 QSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVP 601 (913)
T ss_pred HHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcH
Confidence 9999999999999999998875 34455667766666667789999999999998873 345666777777888899999
Q ss_pred HHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHHHHHhccCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 004938 271 MAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDARLIFDQMVE--KDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345 (722)
Q Consensus 271 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 345 (722)
.|+.++....+. +...|-+-+.....+..++.|..+|.+... +....|.--+...--.++.++|++++++.++.
T Consensus 602 ~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 602 AARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 999999888543 567899999999999999999999988744 35667877777777889999999999998875
Q ss_pred CCCChh-hHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHH
Q 004938 346 MKPDKV-TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTS 421 (722)
Q Consensus 346 ~~p~~~-t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 421 (722)
-|+.. .|..+...+-+.++++.|+..|..-.+. ++..+..|-.|...--+.|.+-.|+.++++..- .|...|-.
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle 758 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLE 758 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH
Confidence 56654 4566667888899999999988776664 466678899999999999999999999998764 46789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC
Q 004938 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501 (722)
Q Consensus 422 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 501 (722)
.|..-.+.|+.+.|..+..+.++. ++-+...|..-|...-+.+.-......+. ...-|..+.-.+..++-...
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHH
Confidence 999999999999999999988875 34445567666666666666444443333 34556777888889999999
Q ss_pred CHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 502 LLREALELVETM-PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 502 ~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
++++|.+-|.+. ...||. .+|.-+..-+.++|.-+.-.+++.+...-+|.+...+..++
T Consensus 832 k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 999999999988 667764 78988999999999999999999999999999877666554
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.2e-11 Score=120.23 Aligned_cols=432 Identities=13% Similarity=0.156 Sum_probs=297.5
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 004938 153 FVQTGLVGMYGACGKILDARLMFDKMSY---RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229 (722)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 229 (722)
..|-....-=...+++..|+.+|++... +++..|---+..=.++..+..|..+++.....=...|..=| --+..=-
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE 152 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHH
Confidence 3343333333456778889999998764 45666888888888899999999999988764222333222 2222334
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhc--ccCCchHHHHHHHHHHhcCCHHHHHHHH
Q 004938 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV--LLKNLVVSTAMVSGYSRAGQVEDARLIF 307 (722)
Q Consensus 230 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f 307 (722)
..|++..|.++|+.-.+ ..|+...|++.|+.=.+...++.|+.++++. ..|++.+|--....-.+.|++..|..+|
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 56888888888888876 4788888888888888888888888888775 3556666666666556666666666665
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCC--h
Q 004938 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD--L 385 (722)
Q Consensus 308 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~--~ 385 (722)
+...+. + |+-.+ +...|.+...-=.+...++.|.-++..+++. ++.+ .
T Consensus 231 erAie~-----------~---~~d~~---------------~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~rae 280 (677)
T KOG1915|consen 231 ERAIEF-----------L---GDDEE---------------AEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAE 280 (677)
T ss_pred HHHHHH-----------h---hhHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHH
Confidence 543221 0 00000 0111222222222344566666677666654 2222 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHH--------HHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--
Q 004938 386 RVNNAIIDMYAKCGSLESAREV--------FERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV-- 452 (722)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~~--------~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 452 (722)
..|..+...--+-|+.....++ ++.+.+ -|-.+|--.+..-...|+.+...++|++.+.. ++|-..
T Consensus 281 eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr 359 (677)
T KOG1915|consen 281 ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHH
Confidence 4444444444444554333322 223333 35578888888888889999999999999885 566331
Q ss_pred -----HHHHHHHHH---HhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH----hcCCHHHHHHHHHhC-CCCCCH
Q 004938 453 -----TFIGVLYAC---SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG----RANLLREALELVETM-PFAPNV 519 (722)
Q Consensus 453 -----t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~-~~~p~~ 519 (722)
.|.-+=.+| ....+++.+.++|+...+ -+|-...++..+--+|+ |+.++..|.+++... |..|..
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~ 437 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch
Confidence 233232333 246889999999999987 67777788887777765 789999999999877 889999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccCCcccEEEeCCEE
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEV 599 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~ 599 (722)
.++...+..-.+.++++....+|++.++.+|.+..++...+.+-...|+++.|..+|....++...-.|..-| ...
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw----kaY 513 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW----KAY 513 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH----HHh
Confidence 9999999999999999999999999999999999999999999999999999999999999887765565544 234
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHH
Q 004938 600 YEFLTADRSHKQTDQIYEKLNEVIS 624 (722)
Q Consensus 600 ~~f~~~~~~~~~~~~i~~~l~~l~~ 624 (722)
..|......+..++.+|+.|.+...
T Consensus 514 IdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 514 IDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred hhhhhhcchHHHHHHHHHHHHHhcc
Confidence 4566666667777888877765443
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=5.3e-15 Score=148.78 Aligned_cols=257 Identities=16% Similarity=0.133 Sum_probs=112.4
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHH-HHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 004938 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS-VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399 (722)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 399 (722)
+...+.+.|++++|++++++......+|+...|-. +...+...++.+.|.+.++.+.+.+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 45667788888889888866554432455444444 344555678888999988888876532 56667777777 6889
Q ss_pred CHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004938 400 SLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFAS 476 (722)
Q Consensus 400 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 476 (722)
++++|.+++...-+ ++...+..++..+...++++++..+++++.... .+++...|..+...+.+.|+.++|.+.++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988877643 566778888888999999999999999977532 344566778888889999999999999999
Q ss_pred hHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 477 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
..+ ..|.+......++..+...|+.+++.++++.. ..+.|...|..+..++...|+.++|...++++.+.+|+|+.
T Consensus 172 al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 987 34456788889999999999999988888776 12345668889999999999999999999999999999999
Q ss_pred hHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 555 ALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 555 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
....+++++...|+.++|.+++++..+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999887643
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.57 E-value=3.7e-10 Score=120.64 Aligned_cols=549 Identities=11% Similarity=0.055 Sum_probs=321.6
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhc---cCCCCCcchHHHHHHHHHhCCCch
Q 004938 23 SSLTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFS---QIPAPPSRVSNKFIRAISWSHRPK 99 (722)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~---~~~~~~~~~~~~li~~~~~~g~~~ 99 (722)
+++..+..+.-.+++..+ ..+..|..|-..|-. . |+.+.+...+- .+.+.|..-|-.+-.-..+.|.++
T Consensus 153 g~~eeA~~i~~EvIkqdp----~~~~ay~tL~~IyEq--r--Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP----RNPIAYYTLGEIYEQ--R--GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred CCHHHHHHHHHHHHHhCc----cchhhHHHHHHHHHH--c--ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 667777777777777663 566777777777766 5 77777776552 344556667777777777788888
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHH----HHHHHHhCCCHHHHHHHH
Q 004938 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG----LVGMYGACGKILDARLMF 175 (722)
Q Consensus 100 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~f 175 (722)
+|.-.|.+.++..+. +...+---...|-+.|+...|..-+.++.....+.|..-.-. .+..|...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888887765322 322222334556677888888888877777643223222222 244455566667777777
Q ss_pred hcCCC--C---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHH--------------------------HHH
Q 004938 176 DKMSY--R---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL--------------------------SKI 224 (722)
Q Consensus 176 ~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------------------------~~l 224 (722)
+.... . +...+|.++..|.+...++.|......+......+|..-+ .-+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 76653 2 3334888888888888888888888887662222222111 112
Q ss_pred HHHHHccCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC----CchHHHHHHHHHHhcC
Q 004938 225 LSACSRAGNLSYGEAVHEFIIDNN--VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK----NLVVSTAMVSGYSRAG 298 (722)
Q Consensus 225 l~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g 298 (722)
.-+.......+....+...+.+.. +..++..|.-+.++|...|.+.+|.++|..+... +...|-.+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 223344455555666666666665 3445678888999999999999999999888654 5678999999999999
Q ss_pred CHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHh--------CCCCCChhhHHHHHHHHHccCCch
Q 004938 299 QVEDARLIFDQMVEKDL---ICWSAMISGYAENNHPQEALKLFNEMQV--------CGMKPDKVTMLSVISACAHLGVLD 367 (722)
Q Consensus 299 ~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~g~~~ 367 (722)
..++|...|+.+...++ ..--.|-..+.+.|+.++|++.+..+.. .+..|+..........+.+.|+.+
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 99999999998865533 3444556678889999999999988642 223344444444445555666655
Q ss_pred HHHHHHHHHHHcC----------------------CCCChh---------------------------------------
Q 004938 368 QAQRIHLYIDKNA----------------------FGGDLR--------------------------------------- 386 (722)
Q Consensus 368 ~a~~i~~~~~~~~----------------------~~~~~~--------------------------------------- 386 (722)
+-..+-..++... ......
T Consensus 544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid 623 (895)
T KOG2076|consen 544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID 623 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence 5433322222100 000011
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHhcCCC-----Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC--CCC
Q 004938 387 ----VNNAIIDMYAKCGSLESAREVFERMRRR-----NV----ISWTSMINAFAIHGDARNALIFFNKMKDE-SI--DPN 450 (722)
Q Consensus 387 ----~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--~p~ 450 (722)
.+.-++..+++.++.++|..+...+.+- +. ..-..++.+....+++..|...++.|... +. .|.
T Consensus 624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 1223344455555555555555544431 11 11223334444555555555555555442 11 122
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc--chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 004938 451 GV-TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY--EHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLM 526 (722)
Q Consensus 451 ~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll 526 (722)
.. .|+..++.....|+-.--.+++..+.. .+|+- ..+......+..++.+..|+..+-+. ...||....+.++
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~---~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLLV---KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 11 223233333333332222222222211 11111 11112222334566777777766554 3345533333332
Q ss_pred HH-H----------HHcCCHHHHHHHHHHHHccCCC--CCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 527 AA-C----------RVHGEIELAEFAAKQLLQLDPD--HDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 527 ~~-~----------~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
+. + .+|-.+-++...+++..++.-. ...++++++.+|-..|-..-|..++++..+..
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 22 1 1233456677777777666533 45688999999999999999999999987754
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.55 E-value=7.7e-12 Score=133.14 Aligned_cols=361 Identities=15% Similarity=0.136 Sum_probs=218.9
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhc---ccCCchHHHHHHHHHH
Q 004938 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV---LLKNLVVSTAMVSGYS 295 (722)
Q Consensus 219 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 295 (722)
.......+.....|+++.|..++.++++.. +.+...|..|...|-..|+.+++...+-.. ...|...|..+.....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 333333444444488888888888888774 346667777888888888888877765333 3335566777777777
Q ss_pred hcCCHHHHHHHHhccCCCCcchHHH---HHHHHHhcCCchHHHHHHHHHHhCCCCCChh----hHHHHHHHHHccCCchH
Q 004938 296 RAGQVEDARLIFDQMVEKDLICWSA---MISGYAENNHPQEALKLFNEMQVCGMKPDKV----TMLSVISACAHLGVLDQ 368 (722)
Q Consensus 296 ~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~ 368 (722)
+.|++++|.-.|.+..+.++.-|-. -+..|-+.|+...|++-|.++.+...+.|.. +.-.++..+...++-+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7777777777777765544333332 3455666777777777777776643211111 22223334444444455
Q ss_pred HHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 369 AQRIHLYIDK-NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR----RNVISWTSMINAFAIHGDARNALIFFNKMK 443 (722)
Q Consensus 369 a~~i~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 443 (722)
|.+.+..... .+-..+...++.++..|.+...++.|......+.. +|..-|.+-= .++. -+.-..
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~~-----~~~~~~ 368 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRRE-----EPNALC 368 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hccc-----cccccc
Confidence 5555554443 12233344455555556655555555555444332 2221111000 0000 000000
Q ss_pred --HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCC
Q 004938 444 --DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI--PPKYEHYGCMVDLFGRANLLREALELVETM---PFA 516 (722)
Q Consensus 444 --~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~ 516 (722)
..++.++... ..+.-++.+....+....+...... ..+ ..+...|.-+.++|...|++.+|++++..+ +..
T Consensus 369 ~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 369 EVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred cCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 0112333322 1222233444444333333333333 343 335788999999999999999999999998 223
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccCCcccE
Q 004938 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSR 592 (722)
Q Consensus 517 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 592 (722)
.+...|--+...+...|.+++|.+.|++++.+.|++..+-..|+.+|...|+.++|.+++..+..-+-+..+++.|
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 3577999999999999999999999999999999999999999999999999999999999876433333345554
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=4.6e-10 Score=111.02 Aligned_cols=491 Identities=13% Similarity=0.081 Sum_probs=339.7
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 004938 82 SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM 161 (722)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 161 (722)
...|-.-...=-.++++..|.++|++.+..... +...|.--+.+=.+...+..|+.+++.++..-.. -...|-..+.+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHH
Confidence 334544444445567788888999988875422 4445555566666788888999999988876322 23345555556
Q ss_pred HHhCCCHHHHHHHHhcCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHH
Q 004938 162 YGACGKILDARLMFDKMS--YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239 (722)
Q Consensus 162 ~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 239 (722)
=-..|++..|+++|++.. +|+...|++.|..=.+....+.|..+|+...- +.|+..+|..-...=-+.|+...+..
T Consensus 151 EE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 667789999999998765 58888999999999999999999999998875 46888888888887788899999999
Q ss_pred HHHHHHHc-CC-CCCHhHHHHHHHHHHhcCChHHHHHHHHhccc----C-CchHHHHHHHHHHhcCCHHHHHHH------
Q 004938 240 VHEFIIDN-NV-ALDAHLQSTLITMYANCGCMDMAKGLFDKVLL----K-NLVVSTAMVSGYSRAGQVEDARLI------ 306 (722)
Q Consensus 240 ~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~~------ 306 (722)
+++.+++. |- ..+...+.+....=.++..++.|.-+|.-.+. . ....|..+..---+-|+.....+.
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 99888774 11 11234555666666677788888888765532 2 133444444443444544333322
Q ss_pred --HhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCCh-------hhHHHHHHHH---HccCCchHHHH
Q 004938 307 --FDQMVEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK-------VTMLSVISAC---AHLGVLDQAQR 371 (722)
Q Consensus 307 --f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~g~~~~a~~ 371 (722)
++.+... |-.+|--.+..--..|+.+...++|++.... ++|-. ..|.-+=-+| ....+++.+++
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3333333 4467777777777889999999999999865 56632 1222222222 35678999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHH----HhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004938 372 IHLYIDKNAFGGDLRVNNAIIDMY----AKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDE 445 (722)
Q Consensus 372 i~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 445 (722)
+++..++. ++-...++..+=-+| .++.++..|.+++..... |-..++...|..-.+.++++....+|++.++-
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99999884 455556665554444 468899999999987764 67778888888888999999999999999984
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 004938 446 SIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWG 523 (722)
Q Consensus 446 g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 523 (722)
.| |..+|......=...|+.+.|..+|..++....+......|.+.|+.=...|.++.|..++++. ...+-..+|-
T Consensus 467 --~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWi 544 (677)
T KOG1915|consen 467 --SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWI 544 (677)
T ss_pred --ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHH
Confidence 45 4567777777777889999999999998875333333456677777778899999999999988 4445556787
Q ss_pred HHHHHHH-----HcC-----------CHHHHHHHHHHHHcc----CCCCCc--hHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 524 SLMAACR-----VHG-----------EIELAEFAAKQLLQL----DPDHDG--ALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 524 ~ll~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
++..--. +.+ ++..|..+|+++... +|.... .+....+.-...|...+...+-+.|-
T Consensus 545 sFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 545 SFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred hHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 7655332 334 677888888888653 343221 12233444455677666666666664
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2.1e-11 Score=120.93 Aligned_cols=214 Identities=16% Similarity=0.137 Sum_probs=176.5
Q ss_pred ccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHH
Q 004938 362 HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIF 438 (722)
Q Consensus 362 ~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 438 (722)
-.|+.-.+.+-++.+++.... +...|--+..+|....+.++-++.|+.... .|..+|..-...+.-.+++++|+.=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 457888888999998887533 333477777889999999999999998764 4667787777777788899999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 004938 439 FNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFA 516 (722)
Q Consensus 439 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 516 (722)
|++.+. +.|+. ..|..+-.+..+.+.++++...|++.++ .+|.-++.|+.....+..++++++|.+.|+.. .++
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999988 67765 4688888888899999999999999998 57777899999999999999999999999987 445
Q ss_pred CC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 517 PN---------VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 517 p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
|+ +.+-..++-.- =.+++..|+.+++++++++|....+|..|+.+-.+.|+.++|.++|++-..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 54 22222222222 238999999999999999999999999999999999999999999987643
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=2.3e-11 Score=119.20 Aligned_cols=425 Identities=13% Similarity=0.108 Sum_probs=285.8
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCccc-----HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHH-
Q 004938 152 PFVQTGLVGMYGACGKILDARLMFDKMSYRDIVP-----WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKIL- 225 (722)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll- 225 (722)
-.+...|..-|.......+|+..++-+.....++ --.+...+.+...+.+|++.|+.....-...+..+-..++
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 3444556677777788889998888776433222 1224456788899999999998777642222333333333
Q ss_pred ---HHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC----------------CchH
Q 004938 226 ---SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK----------------NLVV 286 (722)
Q Consensus 226 ---~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------~~~~ 286 (722)
-.+.+.|.++.|..-|+...+. .|+..+.-.|+-.+..-|+-++..+.|.+|..- +...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 3467889999999999999886 577777777777888889999999999998421 1111
Q ss_pred HH-----HHHHHHHhcCC--HHH----HHHHHhccCCCCcc---hHH----------H--------HHHHHHhcCCchHH
Q 004938 287 ST-----AMVSGYSRAGQ--VED----ARLIFDQMVEKDLI---CWS----------A--------MISGYAENNHPQEA 334 (722)
Q Consensus 287 ~~-----~li~~~~~~g~--~~~----A~~~f~~~~~~~~~---~~~----------~--------li~~~~~~g~~~~A 334 (722)
.+ -++.-.-+.++ -++ |.++..-+..++-. -|. . -...|.++|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 22 22222222222 111 12222222233211 011 0 12347899999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHH--HHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 004938 335 LKLFNEMQVCGMKPDKVTMLSV--ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412 (722)
Q Consensus 335 ~~~~~~m~~~g~~p~~~t~~~l--l~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 412 (722)
+++++-..+..-+.-+..-+.+ +.-.....++..|.+.-...+... .-+....+.-.+.-...|++++|.+.|.+..
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 9999888765433222222222 222222346677777666554432 1122221111223345799999999999998
Q ss_pred CCChHHHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcch
Q 004938 413 RRNVISWTSMI---NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489 (722)
Q Consensus 413 ~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 489 (722)
..|...-.+|. -.+-..|+.++|++.|-++..- +.-+......+.+.|....+..+|++++..... -+|.|+..
T Consensus 518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~i 594 (840)
T KOG2003|consen 518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAI 594 (840)
T ss_pred cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHH
Confidence 87765544443 3467889999999999887663 344566778888899999999999999988775 67788999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCC
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 567 (722)
.+.|.++|-+.|+-.+|....-.- ..-| +..+..-|...|....-.++++..|+++--+.|+.......++..+.+.|
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 999999999999999999876444 3223 44454446666777777899999999999999998777778888889999
Q ss_pred CcchHHHHHHHHHhC
Q 004938 568 RWQDVGELRKSMKER 582 (722)
Q Consensus 568 ~~~~a~~~~~~m~~~ 582 (722)
++..|..+++....+
T Consensus 675 nyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRK 689 (840)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999998764
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=2.7e-10 Score=120.91 Aligned_cols=85 Identities=15% Similarity=0.068 Sum_probs=72.3
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004938 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260 (722)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 260 (722)
++..+|..++..-.-+|+.+.|..++.+|+++|++.+..-|..++-+ .++...++.++.-|...|+.|+..|+..-+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 67788999999999999999999999999999999998888777755 788888999999999999999999887766
Q ss_pred HHHHhcCC
Q 004938 261 TMYANCGC 268 (722)
Q Consensus 261 ~~~~~~g~ 268 (722)
-.+.++|.
T Consensus 279 ip~l~N~~ 286 (1088)
T KOG4318|consen 279 IPQLSNGQ 286 (1088)
T ss_pred Hhhhcchh
Confidence 65555443
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.9e-11 Score=117.73 Aligned_cols=329 Identities=15% Similarity=0.150 Sum_probs=246.2
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchH-HHHHHHHH
Q 004938 248 NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW-SAMISGYA 326 (722)
Q Consensus 248 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~li~~~~ 326 (722)
+...|...+-...-.+.+.|....|...|......-+..|.+.+....-..+.+.+..+-...+..+...- -.+..++.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 34556665555566677788888898888888776666677666655555555555555444444321111 12345666
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHH-H
Q 004938 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF--GGDLRVNNAIIDMYAKCGSLE-S 403 (722)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~-~ 403 (722)
...+.++++.-.......|.+-+...-+....+.-...++++|+.+|+.+.+... -.|..+|+.++-.-..+.++. -
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 6678888998888888888655555444455555678899999999999998731 125667776663322222222 2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcC
Q 004938 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYN 482 (722)
Q Consensus 404 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 482 (722)
|..+++ +.+--+.|.-.+.+-|.-.++.++|+..|++.++ +.|.. ..|+.+..-|....+...|.+-++.+++ -
T Consensus 319 A~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i 393 (559)
T KOG1155|consen 319 AQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--I 393 (559)
T ss_pred HHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--c
Confidence 333332 2233345666777888889999999999999988 56664 4677788899999999999999999987 5
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 483 IPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 483 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
.|.|...|-.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|+..|++++..+.-+...++.|+
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 5668899999999999999999999999998 6667 6789999999999999999999999999998877888999999
Q ss_pred HHhhhCCCcchHHHHHHHHHh
Q 004938 561 NIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 561 ~~~~~~g~~~~a~~~~~~m~~ 581 (722)
++|.+.++.++|...+++-.+
T Consensus 474 kLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999988766
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.7e-10 Score=112.56 Aligned_cols=355 Identities=10% Similarity=0.020 Sum_probs=208.9
Q ss_pred CCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHH--HHH
Q 004938 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL--SKI 224 (722)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~l 224 (722)
+...|.+.+-...-.+-+.|....|+..|.+....-+.-|.+.+.-.--..+.+.+..+. . |...|..-+ --+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~----~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV----V-GLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH----h-cCcccchHHHHHHH
Confidence 334555554444455667788888998888776654555555443322222222222221 1 122221111 123
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCC------chHHHHHHHHHHhcC
Q 004938 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKN------LVVSTAMVSGYSRAG 298 (722)
Q Consensus 225 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g 298 (722)
..++-.....+++.+-.......|++.+...-+-...++-...++|+|+.+|+++.+.| ..+|..++-.-..+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 44555556777888888888888988888888877788888889999999988886553 345554443322222
Q ss_pred CHH-HHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHH
Q 004938 299 QVE-DARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377 (722)
Q Consensus 299 ~~~-~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 377 (722)
++. -|..++ .+.+--+.|...+.+-|.-.++.++|...|++.++.+ +-....|+.+..-|....+...|.+-++.++
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 211 122222 1122234455555666666777777777777776643 1233455555666677777777777777776
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004938 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454 (722)
Q Consensus 378 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 454 (722)
+-+ +.|-..|-.|.++|.-.+...-|.-.|++..+ .|...|.+|..+|.+.++.++|++.|.+....| ..+...+
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l 469 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSAL 469 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHH
Confidence 653 45666677777777777777777777766543 466677777777777777777777777766654 3355666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhc---CC-CC-CcchHHHHHHHHHhcCCHHHHHHHH
Q 004938 455 IGVLYACSHAGLVDEGREIFASMTNEY---NI-PP-KYEHYGCMVDLFGRANLLREALELV 510 (722)
Q Consensus 455 ~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~ 510 (722)
..|...+-+.++.++|.+.|+.-.+.. |. .| ......-|..-+.+.+++++|....
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 777777777777777777766655422 11 11 1122222344445555655555443
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=4.2e-12 Score=131.11 Aligned_cols=278 Identities=13% Similarity=0.042 Sum_probs=213.2
Q ss_pred CCHHHHHHHHhccCCC--Cc-chHHHHHHHHHhcCCchHHHHHHHHHHhCC--CCCChhhHHHHHHHHHccCCchHHHHH
Q 004938 298 GQVEDARLIFDQMVEK--DL-ICWSAMISGYAENNHPQEALKLFNEMQVCG--MKPDKVTMLSVISACAHLGVLDQAQRI 372 (722)
Q Consensus 298 g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~i 372 (722)
=+..+|...|..++.. |+ .....+..+|...+++++|.++|+...+.. ..-+...|.+++.-+-+ +.+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 3567788888886544 33 334556788999999999999999987642 11155677777765432 122222
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 004938 373 HLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRR---NVISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449 (722)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 449 (722)
+.+-+-.--+..+.+|.++.++|.-+++.+.|.+.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 222222223556889999999999999999999999998863 456788888888889999999999998876 456
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 004938 450 NGV-TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLM 526 (722)
Q Consensus 450 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 526 (722)
... .|..+...|.+.++++.|.-.|+.+.+ --|.+.....++...+-+.|+.++|+++++++ -.+| |+..--.-.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 543 678888899999999999999999875 23345677788888999999999999999998 4444 443333455
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 527 AACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 527 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
..+...+++++|+..++++.++-|++...+.+++.+|.+.|+.+.|..-|.-+.+..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 567778899999999999999999999999999999999999999998888776643
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5e-10 Score=113.60 Aligned_cols=263 Identities=13% Similarity=0.019 Sum_probs=209.4
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
++........-+...+++.+.+++++...+.. ++....+..-|.++...|+..+-..+=..+++. .|....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44444555566778899999999999988763 556666666666778888877777766667665 4666788889998
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004938 394 MYAKCGSLESAREVFERMRRRN---VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 470 (722)
-|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+..-|.+.+..+-|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 8988999999999999876533 368999999999999999999999887663 122223344555568889999999
Q ss_pred HHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--C------CCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 004938 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--P------FAP-NVVIWGSLMAACRVHGEIELAEFA 541 (722)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~------~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 541 (722)
.++|..+.. -.|.|+..++-+.-+....+.+.+|...|+.. + ..+ -..+|+.|.-+|++.+.+++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999998875 44556778888888888889999999998875 1 111 245688889999999999999999
Q ss_pred HHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 542 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
+++++.+.|++..++..++-+|...|+++.|...|.+..-
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987654
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=1.3e-10 Score=122.47 Aligned_cols=245 Identities=10% Similarity=0.074 Sum_probs=124.2
Q ss_pred HhcCCchHHHHHHHHHHhCCCCCChhhHH--HHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 004938 326 AENNHPQEALKLFNEMQVCGMKPDKVTML--SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403 (722)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 403 (722)
.+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|...++.+.+.. +.+..+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555442 33332221 11334445555555555555555443 3344455555555555555555
Q ss_pred HHHHHHhcCCCC---h--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004938 404 AREVFERMRRRN---V--------ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472 (722)
Q Consensus 404 A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 472 (722)
|.+++..+.+.. . ..|..++.......+.+...++++.+.+. .+.+......+..++...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 555555554311 1 12222233233333444444555544332 23344455556666666666666666
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004938 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550 (722)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 550 (722)
+++...+ .+|+... .++......++.+++++.+++. ...|+ ...+..+...|...+++++|.+.|+++++.+|
T Consensus 285 ~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6665554 1233211 1122222346666666666655 33343 34555666666666677777777777776666
Q ss_pred CCCchHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 551 DHDGALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
++ ..+..++.++.+.|+.++|.+++++-.
T Consensus 360 ~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 360 DA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 345566666667777777766666543
No 46
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.44 E-value=6.8e-09 Score=106.71 Aligned_cols=496 Identities=13% Similarity=0.115 Sum_probs=290.1
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 004938 70 ALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-GLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF 148 (722)
Q Consensus 70 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 148 (722)
+......|| +.|-.-+..+.++|+.......|++.+.. -+......|...++-..+.+-++.+..++++.++.
T Consensus 94 ~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-- 167 (835)
T KOG2047|consen 94 CLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-- 167 (835)
T ss_pred HHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--
Confidence 344444554 36777778888888888888888886643 33345567888888788888888888888888764
Q ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCC----------CcccHHHHHHHHHhCCChh---HHHHHHHHHHHCCCC
Q 004938 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMSYR----------DIVPWSVMIDGYFQNGLFD---EVLNLFEEMKMSNVE 215 (722)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----------~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~ 215 (722)
++..-+-.|..+++.+++++|.+.+...... +-..|+.+-...+++-+.- ....+++.+.. .-
T Consensus 168 --~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rf 243 (835)
T KOG2047|consen 168 --APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RF 243 (835)
T ss_pred --CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cC
Confidence 3334677788888888888888888777533 2233666655555543332 23334444432 23
Q ss_pred CCH--hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh----------------------HH
Q 004938 216 PDE--MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM----------------------DM 271 (722)
Q Consensus 216 p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----------------------~~ 271 (722)
+|. ..|++|..-|.+.|.++.|..++++.+.. ...+.-++.+.+.|+..... +-
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~ 321 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL 321 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence 443 35677777788888888888888777664 22334444445555432211 11
Q ss_pred HHHHHHhcccC---------------CchHHHHHHHHHHhcCCHHHHHHHHhccCCC---------CcchHHHHHHHHHh
Q 004938 272 AKGLFDKVLLK---------------NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK---------DLICWSAMISGYAE 327 (722)
Q Consensus 272 A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~ 327 (722)
...-|+.+..+ ++..|..-+. +..|+..+-...+.+.... -...|..+...|-.
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh
Confidence 22222222211 1122222111 2233444444444443211 12357777777888
Q ss_pred cCCchHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCCchHHHHHHHHHHHcC-----------CCC------ChhH
Q 004938 328 NNHPQEALKLFNEMQVCGMKPD---KVTMLSVISACAHLGVLDQAQRIHLYIDKNA-----------FGG------DLRV 387 (722)
Q Consensus 328 ~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~-----------~~~------~~~~ 387 (722)
+|+.+.|..+|++..+-..+-- ..+|..-...=.+..+++.|..+.+.+.... .++ +..+
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 8888888888877765432111 1122222222234556677777666554321 111 2335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH-
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI---NAFAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACS- 462 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~- 462 (722)
|..+++..-..|-++....+|+++.+--+.|=..++ .-+-.+.-++++.+.|++-+..=-.|+.. .|+..+.-+.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 556667677778888888888887752222212222 12334556788888887766542234442 4555554333
Q ss_pred --hcCCHHHHHHHHHHhHhhcCCCCCcc--hHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCC
Q 004938 463 --HAGLVDEGREIFASMTNEYNIPPKYE--HYGCMVDLFGRANLLREALELVETM--PFAPN--VVIWGSLMAACRVHGE 534 (722)
Q Consensus 463 --~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~ 534 (722)
..-.++.|..+|+...+ +.||... .|-.....=.+-|....|++++++. +.++. ...|+..+.--...=-
T Consensus 560 rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred HhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC
Confidence 23468889999999887 7776532 2222223334568888899999888 34443 2567777664443333
Q ss_pred HHHHHHHHHHHHccCCCCCch--HHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 535 IELAEFAAKQLLQLDPDHDGA--LVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 535 ~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
+.....+|+++++.-|++..- ....+++-.+.|..+.|..++..--+
T Consensus 638 v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 638 VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 556678888888887775433 33557777888999999888876544
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=1.5e-10 Score=121.98 Aligned_cols=202 Identities=10% Similarity=0.010 Sum_probs=133.7
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
+......+...|.+.|++++|++++..+.+.+..++. .+..+-. ..|..++.
T Consensus 186 ~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~---------------------------~a~~~l~~ 237 (398)
T PRK10747 186 HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ---------------------------QAWIGLMD 237 (398)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH---------------------------HHHHHHHH
Confidence 4455666667777777777777777777766533211 1110000 01112222
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004938 394 MYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 470 (722)
......+.+...++++.+++ .++.....+...+...|+.++|.+.+++..+. .||... .++.+....++.+++
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~a 313 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQL 313 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHH
Confidence 22233344555555555543 46667777788888888888888888887773 444421 123333455888888
Q ss_pred HHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004938 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549 (722)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 549 (722)
.+..+...+ ..|.|...+.++..++.+.|++++|.+.|++. ...|+...+..|...+...|+.++|..++++.+.+-
T Consensus 314 l~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 314 EKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888888876 44556677888888888888888888888887 677888888888888889999999999999887653
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.7e-11 Score=126.80 Aligned_cols=244 Identities=16% Similarity=0.159 Sum_probs=193.0
Q ss_pred CchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHH-HHHH
Q 004938 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA--FGGDLRVNNAIIDMYAKCGSLE-SARE 406 (722)
Q Consensus 330 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~-~A~~ 406 (722)
+..+|+..|...... +.-+......+..+|...+++++++.+|+.+.+.. ...+..+|.+.+--+-+.=.+. -|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 567899999985443 34445667778889999999999999999998742 1235667776664332221111 1222
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCC
Q 004938 407 VFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPP 485 (722)
Q Consensus 407 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 485 (722)
+.+. ....+.+|-++.++|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.... .
T Consensus 413 Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~ 484 (638)
T KOG1126|consen 413 LIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----V 484 (638)
T ss_pred HHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----C
Confidence 2222 234678999999999999999999999999988 677 466888888888888999999999998764 4
Q ss_pred CcchHHH---HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 486 KYEHYGC---MVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 486 ~~~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
+..+|++ |.-.|.++++++.|+-.|+++ .+.|. .+....+...+.+.|+.|+|++++++++-++|.++-.-+.-+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 5556654 667899999999999999998 77785 566677778889999999999999999999999999999999
Q ss_pred HHhhhCCCcchHHHHHHHHHhC
Q 004938 561 NIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 561 ~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.++...+++++|...++++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999873
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=3.8e-10 Score=119.76 Aligned_cols=459 Identities=12% Similarity=0.067 Sum_probs=261.3
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCc
Q 004938 104 VFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDI 183 (722)
Q Consensus 104 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~ 183 (722)
++-.|...|+.|+..||..++.-|+..|+.+.|- +|..|.-...+....+++.++......++.+.+. +|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 4455666777777777777777777777777766 7777766666666777777777777777665554 5566
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHH-HHH-------CCCCCCHhHHHHHHHHHHccCChHHH---------HHHHHHHHH
Q 004938 184 VPWSVMIDGYFQNGLFDEVLNLFEE-MKM-------SNVEPDEMVLSKILSACSRAGNLSYG---------EAVHEFIID 246 (722)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~g~~p~~~t~~~ll~~~~~~g~~~~a---------~~~~~~~~~ 246 (722)
.+|+.|..+|.+.|+... ++..++ |.. .|+..-..-+-..+.+| .+.+..+ +.+++..++
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~--p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCC--PHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccC--cccchhHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777654 222222 211 12111111111111111 1111111 112222222
Q ss_pred cC--CCCCHhHHHH--HHHHHHh-cCChHHHHHHHHhccc-CCchHHHHHHHHHHhcCCHHHHHHHHhccCCCC----cc
Q 004938 247 NN--VALDAHLQST--LITMYAN-CGCMDMAKGLFDKVLL-KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD----LI 316 (722)
Q Consensus 247 ~g--~~~~~~~~~~--li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~----~~ 316 (722)
.+ .+........ .++-... ...+++-..+.....+ ++..++.+++..-.-+|+++.|..++.+|.++. ..
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 22 1111000000 1111111 1223333333333333 688888999999999999999999999997762 33
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHH-----------HHHHHHH-------
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQR-----------IHLYIDK------- 378 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~-----------i~~~~~~------- 378 (722)
-|..|+-+ .+....+..+++-|.+.|+.|++.|+...+..+...|....+.. +...+..
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 34445444 78888888999999999999999999888877766443222211 1111100
Q ss_pred ------------------cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CChHHHHHHHHHHHHcCC--
Q 004938 379 ------------------NAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-------RNVISWTSMINAFAIHGD-- 431 (722)
Q Consensus 379 ------------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~-- 431 (722)
.|+.....+|...+. ...+|.-++..++-..+.. .++..|..++.-|.+.-+
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 122222333332222 2235666666666666553 234455444444432111
Q ss_pred --------------------HHHHHHHHHHHHHcCCCCCH----------------------------HHHHHHHHHHHh
Q 004938 432 --------------------ARNALIFFNKMKDESIDPNG----------------------------VTFIGVLYACSH 463 (722)
Q Consensus 432 --------------------~~~A~~~~~~m~~~g~~p~~----------------------------~t~~~ll~a~~~ 463 (722)
..+..++... ..||. ..-+.++..|..
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 1111111111 12222 112334444555
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP-----FAPNVVIWGSLMAACRVHGEIELA 538 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a 538 (722)
.-+..+++..-+.... +.++ ..|..||+.+......++|..+.++.. +.-|...+..+.+...+++....+
T Consensus 472 e~n~lK~l~~~ekye~-~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYED-LLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHH-HHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 5455555544333332 1222 678999999999999999999999883 233455677788888899999999
Q ss_pred HHHHHHHHcc---CCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCcc
Q 004938 539 EFAAKQLLQL---DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILK 586 (722)
Q Consensus 539 ~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 586 (722)
..+++++.+. .|........+.+.-...|..+...+..+-+...|+.-
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 9988888763 34334555667777788899999999999998888765
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=4.1e-10 Score=119.39 Aligned_cols=142 Identities=8% Similarity=-0.018 Sum_probs=85.5
Q ss_pred HHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHH
Q 004938 402 ESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF---IGVLYACSHAGLVDEGREIFA 475 (722)
Q Consensus 402 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~ 475 (722)
+...+..+..++ .+...+..+...+...|+.++|.+.+++..+. .||.... ..........++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 344444444443 46777777888888888888888888888774 4554321 111112233466666767666
Q ss_pred HhHhhcCCCCCc--chHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 476 SMTNEYNIPPKY--EHYGCMVDLFGRANLLREALELVET--M-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 476 ~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
...+. .|-+. ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|..++++.+.
T Consensus 324 ~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66652 22233 4455666666667777777776663 2 4456666666666666666777777666666543
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.40 E-value=1.2e-12 Score=131.62 Aligned_cols=226 Identities=18% Similarity=0.252 Sum_probs=105.6
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
|...|..+.......+++++|++.++++...+.. +...+..++.. ...+++++|.++.....+.. ++...+..++.
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~ 118 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQ 118 (280)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHH
Confidence 4555666666666677788888888877765422 34445555554 57777888877776655432 45556667778
Q ss_pred HHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCH
Q 004938 394 MYAKCGSLESAREVFERMR-----RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLV 467 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 467 (722)
.+.+.++++++.++++.+. ..+...|..+...+.+.|+.++|++.+++..+ ..|+ ......++..+...|+.
T Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 119 LYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDY 196 (280)
T ss_dssp -HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCCh
Confidence 8888888888888888754 25677888888889999999999999999988 4676 55677888888999999
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 545 (722)
+++.+++....+. .+.+...+..+..+|...|+.++|+..+++. ...| |..+...+..++...|+.++|..+.+++
T Consensus 197 ~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 197 DEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999888773 3667788889999999999999999999988 3345 6677788888999999999999998887
Q ss_pred Hc
Q 004938 546 LQ 547 (722)
Q Consensus 546 ~~ 547 (722)
++
T Consensus 275 ~~ 276 (280)
T PF13429_consen 275 LR 276 (280)
T ss_dssp --
T ss_pred cc
Confidence 65
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.37 E-value=6.2e-10 Score=118.03 Aligned_cols=285 Identities=13% Similarity=0.044 Sum_probs=168.6
Q ss_pred CCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 004938 196 NGLFDEVLNLFEEMKMSNVEPDE-MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG 274 (722)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 274 (722)
.|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.|.+.+..+.+....+...+.-.....+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555554433 2332 22223334444556666666666555543222222233333555555555555555
Q ss_pred HHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHH
Q 004938 275 LFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354 (722)
Q Consensus 275 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 354 (722)
.++.+.+ ....+...+..+...+.+.|++++|.+++..+.+.++.+......
T Consensus 175 ~l~~l~~----------------------------~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~ 226 (409)
T TIGR00540 175 GVDKLLE----------------------------MAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD 226 (409)
T ss_pred HHHHHHH----------------------------hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5333211 111244556667777777777777777777777765432221111
Q ss_pred HHHHHH---HccCCchHHHHHHHHHHHcC---CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHH---HHHHH
Q 004938 355 SVISAC---AHLGVLDQAQRIHLYIDKNA---FGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVIS---WTSMI 423 (722)
Q Consensus 355 ~ll~~~---~~~g~~~~a~~i~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li 423 (722)
.-..+. ...+..+.+.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+ ||... +....
T Consensus 227 l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~ 306 (409)
T TIGR00540 227 LEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLP 306 (409)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHH
Confidence 111111 12222222233443333322 124777888888899999999999999988775 33321 12222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc
Q 004938 424 NAFAIHGDARNALIFFNKMKDESIDPNGV---TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500 (722)
Q Consensus 424 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 500 (722)
......++.+.+++.+++..+. .|+.. ...++...|.+.|++++|.++|+.... +...|+.+.+..+...+.+.
T Consensus 307 ~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 307 IPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred hhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHc
Confidence 2233457788888888887773 56654 455778889999999999999995433 35578888888999999999
Q ss_pred CCHHHHHHHHHhC
Q 004938 501 NLLREALELVETM 513 (722)
Q Consensus 501 g~~~~A~~~~~~~ 513 (722)
|+.++|.+++++.
T Consensus 384 g~~~~A~~~~~~~ 396 (409)
T TIGR00540 384 GDKAEAAAMRQDS 396 (409)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999874
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.1e-08 Score=102.10 Aligned_cols=413 Identities=11% Similarity=0.018 Sum_probs=255.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-hhhHHHHHHHH
Q 004938 85 SNKFIRAISWSHRPKHALKVFLKMLNEGLTID-RFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSD-PFVQTGLVGMY 162 (722)
Q Consensus 85 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 162 (722)
+-..-+-|-++|.+++|++.|.+.++. .|| +.-|.....+|...|+++...+.-...++. .|+ +-.+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 344556678899999999999999884 577 566777777888899999888877766654 343 33455555677
Q ss_pred HhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH---------HHC--CCCCCHhHHHHHHHHHHcc
Q 004938 163 GACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM---------KMS--NVEPDEMVLSKILSACSRA 231 (722)
Q Consensus 163 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~--g~~p~~~t~~~ll~~~~~~ 231 (722)
-..|++++|+.= +|-.++..++..+.-.-.+.+++... .+. .+.|+.....+....+...
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 777888877632 23333444443333333333333221 111 1234433333333322110
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhcc
Q 004938 232 GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC-GCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM 310 (722)
Q Consensus 232 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 310 (722)
- . ..+...+-..|...-..+=..|... ..+..|...+.+- ...+...
T Consensus 265 ~--~------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~------------------------~~~~~~~ 312 (606)
T KOG0547|consen 265 P--K------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEE------------------------CLGSESS 312 (606)
T ss_pred c--c------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHH------------------------hhhhhhh
Confidence 0 0 0000000001111111111111110 0122222221110 0001111
Q ss_pred CCCC---------cchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCC
Q 004938 311 VEKD---------LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF 381 (722)
Q Consensus 311 ~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~ 381 (722)
...+ ..+.......+.-.|+...|...|+..+.....++. .|.-+..+|....+.++..+.|+.+.+.+
T Consensus 313 ~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld- 390 (606)
T KOG0547|consen 313 LSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD- 390 (606)
T ss_pred ccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-
Confidence 1111 112222233445568888899999988876433333 27677778889999999999999998875
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004938 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458 (722)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 458 (722)
+.+..+|..=..++.-.+++++|..-|++... .++..|-.+.-+..+.+++++++..|++.+.. ++--...|+...
T Consensus 391 p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fA 469 (606)
T KOG0547|consen 391 PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFA 469 (606)
T ss_pred CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHH
Confidence 55677888788888888999999999998876 34556666666677888999999999999885 333356888888
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhcCCCCC-------cchH--HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 004938 459 YACSHAGLVDEGREIFASMTNEYNIPPK-------YEHY--GCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMA 527 (722)
Q Consensus 459 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~--~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 527 (722)
..+...+++++|.+.|+..++ +.|+ ...+ -.++-.-- .+++..|.+++++. .+.|. ...+.+|..
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq 545 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQ 545 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 999999999999999999875 3333 1111 12222222 38899999999988 77775 468899999
Q ss_pred HHHHcCCHHHHHHHHHHHHccC
Q 004938 528 ACRVHGEIELAEFAAKQLLQLD 549 (722)
Q Consensus 528 ~~~~~g~~~~a~~~~~~~~~~~ 549 (722)
.-.+.|++++|+++|++...+-
T Consensus 546 ~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 546 FELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 54
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=1.9e-08 Score=106.01 Aligned_cols=422 Identities=15% Similarity=0.082 Sum_probs=250.0
Q ss_pred CCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-HHH
Q 004938 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY---RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM-VLS 222 (722)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 222 (722)
.+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+...|.-.|.-..|+.+++.-....-.|+.. .+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4567889999999999999999999999987653 233459999999999999999999998876543335443 343
Q ss_pred HHHHHHH-ccCChHHHHHHHHHHHHc--CC--CCCHhHHHHHHHHHHhc----C-------ChHHHHHHHHhcccC---C
Q 004938 223 KILSACS-RAGNLSYGEAVHEFIIDN--NV--ALDAHLQSTLITMYANC----G-------CMDMAKGLFDKVLLK---N 283 (722)
Q Consensus 223 ~ll~~~~-~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~----g-------~~~~A~~~~~~~~~~---~ 283 (722)
..-..|. +.+..+++..+-..+++. +. ......|-.+.-+|... . ...++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444454 446677777666666652 11 11233344444444321 1 123344445544332 2
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhccC----CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004938 284 LVVSTAMVSGYSRAGQVEDARLIFDQMV----EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359 (722)
Q Consensus 284 ~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 359 (722)
..+.-.+.--|+..++++.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+.....- .-|..-...-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 2222233334555666666665555442 2245566666666666666666666666554320 1111111111222
Q ss_pred HHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCh-HHHHHHHHHHHHcCCHH
Q 004938 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-----RNV-ISWTSMINAFAIHGDAR 433 (722)
Q Consensus 360 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~-~~~~~li~~~~~~g~~~ 433 (722)
-...++.+++......++.. |... ......|+-....+.+..+.- .+. .++..+.. ..+ -+..
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~ 625 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLK 625 (799)
T ss_pred hhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhh
Confidence 22344555554444433321 0000 000011112222333333221 111 12222211 111 1111
Q ss_pred HHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 004938 434 NALIFFNKMKDESIDPNG--------VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505 (722)
Q Consensus 434 ~A~~~~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 505 (722)
.+..-. .|...-+.|+. ..|......+...+..++|...+.+..+ ..+-....|......+...|.++|
T Consensus 626 ~~~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 626 SAGSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hccccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHH
Confidence 110000 02222222322 2345556678889999999988888775 445566778888889999999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 506 ALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEF--AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 506 A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
|.+.|... .+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++.+|..|+.++.+.|+.++|.+.|....+
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999887 67786 4688889999999998888888 99999999999999999999999999999999999998876
Q ss_pred CC
Q 004938 582 RG 583 (722)
Q Consensus 582 ~g 583 (722)
..
T Consensus 783 Le 784 (799)
T KOG4162|consen 783 LE 784 (799)
T ss_pred hc
Confidence 53
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=5.8e-10 Score=108.98 Aligned_cols=196 Identities=12% Similarity=0.062 Sum_probs=158.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 461 (722)
...+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45667777888888888888888887653 345677888888889999999999999888752 33445677778888
Q ss_pred HhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 004938 462 SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAE 539 (722)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 539 (722)
...|++++|.+.++.+......+.....+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999998863222334556777888899999999999999887 4344 4567888888999999999999
Q ss_pred HHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 540 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
..++++++..|+++..+..++.++...|++++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999888888888899999999999999998887755
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.28 E-value=1.3e-08 Score=99.47 Aligned_cols=289 Identities=14% Similarity=0.112 Sum_probs=179.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 004938 196 NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275 (722)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 275 (722)
.|++..|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-..+.++.+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466777777666655554332 2344445555566677777777777776654455555666666666667777666666
Q ss_pred HHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHH
Q 004938 276 FDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS 355 (722)
Q Consensus 276 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 355 (722)
.++ +.+|...++........+|.+.|++.+.+.++..|.+.|+--|...-
T Consensus 176 v~~----------------------------ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-- 225 (400)
T COG3071 176 VDQ----------------------------LLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-- 225 (400)
T ss_pred HHH----------------------------HHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH--
Confidence 443 34455556777777888888888888888888888887754443210
Q ss_pred HHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCH
Q 004938 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDA 432 (722)
Q Consensus 356 ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 432 (722)
++ ...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.
T Consensus 226 ---------------~l-----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~ 279 (400)
T COG3071 226 ---------------RL-----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDH 279 (400)
T ss_pred ---------------HH-----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCCh
Confidence 00 011223333322222233333333344332 3455555566666677777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512 (722)
Q Consensus 433 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 512 (722)
++|.++.++..+.+..|+ ...+-.+.+.++.+.-++..+.-.+.++..| ..+.+|...|.+.+.|.+|.+.|+.
T Consensus 280 ~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 280 DEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred HHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777777777666665 2223345566777666666666666444333 6677777777788888888877776
Q ss_pred C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 513 M-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 513 ~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
. +..|+...|+-+..++.+.|+.++|.+..++.+.
T Consensus 354 Al~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 354 ALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6 6677777888788888888888888777777663
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=9.6e-12 Score=87.67 Aligned_cols=50 Identities=32% Similarity=0.707 Sum_probs=47.6
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 004938 181 RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSR 230 (722)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 230 (722)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=6.5e-09 Score=98.47 Aligned_cols=247 Identities=15% Similarity=0.119 Sum_probs=187.5
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHH
Q 004938 327 ENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD---LRVNNAIIDMYAKCGSLES 403 (722)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 403 (722)
-+++.++|.++|-+|.+.. +-+..+-.++.+.|.+.|..|.|+.+|+.+.++.--+. ....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3578999999999998742 22344556677788899999999999999887521111 2233467788999999999
Q ss_pred HHHHHHhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 004938 404 AREVFERMRRRNV---ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV----TFIGVLYACSHAGLVDEGREIFAS 476 (722)
Q Consensus 404 A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~ 476 (722)
|+.+|..+.+.+. .....|+..|-+..++++|++.-+++...|-++..+ .|.-+........+++.|..++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999887333 466778899999999999999999999876565543 366666777778899999999999
Q ss_pred hHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 477 MTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNV--VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 477 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
..+ -.+..+..--.+.+.+...|+++.|.+.++.. ...|+. .+...|..+|...|+.+++...+.++.+..++..
T Consensus 206 Alq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 206 ALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 887 34455666667889999999999999999988 445663 5778889999999999999999999999888754
Q ss_pred chHHHHHHHhhhCCCcchHHHHHH
Q 004938 554 GALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
.-..+...-....-.+.|..+..
T Consensus 284 -~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 284 -AELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred -HHHHHHHHHHHhhChHHHHHHHH
Confidence 44444554444444445554443
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=4.1e-09 Score=110.60 Aligned_cols=230 Identities=14% Similarity=0.145 Sum_probs=171.7
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHHc-----CC-CCCh-hHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC
Q 004938 351 VTMLSVISACAHLGVLDQAQRIHLYIDKN-----AF-GGDL-RVNNAIIDMYAKCGSLESAREVFERMRR--------RN 415 (722)
Q Consensus 351 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~ 415 (722)
.|...+...|...|+++.|..++...++. |. .|.+ ...+.+...|...+++++|..+|+++.. .+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566777888888888888888877653 21 1222 2234567788889999999988888753 12
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcC--C
Q 004938 416 ---VISWTSMINAFAIHGDARNALIFFNKMKD-----ESIDPN-GV-TFIGVLYACSHAGLVDEGREIFASMTNEYN--I 483 (722)
Q Consensus 416 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~-~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 483 (722)
..+++.|...|...|++++|...+++..+ .|..+. .. -++.+...|...+.+++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 25777888889999999988888877544 222222 22 466777789999999999999988776543 2
Q ss_pred CCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-
Q 004938 484 PPK----YEHYGCMVDLFGRANLLREALELVETM---------PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQL- 548 (722)
Q Consensus 484 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 548 (722)
.++ ..+|+.|...|...|+++||+++++++ +..+. ...++.|..+|.+.+++++|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 357899999999999999999999886 12232 456778899999999999999999887653
Q ss_pred ---CCCC---CchHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 549 ---DPDH---DGALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 549 ---~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
.|++ ..+|.+|+.+|...|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4554 4577799999999999999999988875
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.23 E-value=3.3e-08 Score=96.84 Aligned_cols=274 Identities=11% Similarity=0.045 Sum_probs=189.4
Q ss_pred CCCHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHH
Q 004938 165 CGKILDARLMFDKMSYR---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241 (722)
Q Consensus 165 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 241 (722)
.|++..|+++..+-.+. -+..|..-+.+--+.|+.+.+-.++.+.-+..-.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 48899999888765432 333466666777888999999999988877544556666777777788889999999888
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCc-----------hHHHHHHHHHHhcCCHHHHHHHHhcc
Q 004938 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL-----------VVSTAMVSGYSRAGQVEDARLIFDQM 310 (722)
Q Consensus 242 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~f~~~ 310 (722)
+.+.+.+ +.++.+.......|.+.|++.....++.++.+.+. .+|+.+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888876 44677888889999999999999999888865532 35666666655555555555566666
Q ss_pred CCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhH
Q 004938 311 VEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387 (722)
Q Consensus 311 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~ 387 (722)
+.+ ++..-.+++.-+.+.|+.++|.++..+..+.+..|. ...+-.+.+.++.+.-.+..+...+. .+.++..
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L 330 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLL 330 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhH
Confidence 443 556666677777788888888888888777765555 22223445666666666555555543 2334466
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
+.+|...|.+.+.|.+|...|+...+ ++..+|+-+..++.+.|+..+|.+.+++...
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66777777777777777777765542 6666777777777777777777666666544
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=2.5e-07 Score=94.82 Aligned_cols=441 Identities=14% Similarity=0.120 Sum_probs=245.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHH--HHHHHH--
Q 004938 88 FIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTG--LVGMYG-- 163 (722)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~-- 163 (722)
=++-+..+|++++|.....+++..+ +-|...+..-+-++.+.+.+++|..+.+. .+ -..+++. +=.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHH
Confidence 3555667888899999988888765 22445555556667778888888744432 21 1112222 234444
Q ss_pred hCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-ccCChHHHHHHHH
Q 004938 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS-RAGNLSYGEAVHE 242 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~ 242 (722)
+.+..|+|+..++....-+...-..-...+-+.|++++|+++|+.+.+.+.. | +-..+.+-+ ..+. +... .
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a---~l~~-~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAA---ALQV-Q 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHH---hhhH-H
Confidence 6788888888888555445445555667778888888888888888766432 2 211111110 0000 0111 0
Q ss_pred HHHHcCCCCCHhHHHH---HHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhcc-CCCC----
Q 004938 243 FIIDNNVALDAHLQST---LITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQM-VEKD---- 314 (722)
Q Consensus 243 ~~~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~-~~~~---- 314 (722)
.+......| ..+|.. ..-.+...|++.+|+++++... ++-.+- .+.|
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~------------------------~~~~e~l~~~d~~eE 217 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKAL------------------------RICREKLEDEDTNEE 217 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHH------------------------HHHHHhhcccccchh
Confidence 111111122 222222 2344566777888877765441 111100 1110
Q ss_pred -c-----chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHH---HHHccCCchH--HHHHHHH--------
Q 004938 315 -L-----ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVIS---ACAHLGVLDQ--AQRIHLY-------- 375 (722)
Q Consensus 315 -~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~g~~~~--a~~i~~~-------- 375 (722)
. ..--.|.-.+...|+-++|..++...+... .+|........+ +...-.++-. +...++.
T Consensus 218 eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 218 EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHH
Confidence 0 011223345566677777777777777654 344432222211 1111111111 1111110
Q ss_pred ---HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hHHHHHHHHH-HH-HcCCHHHHHHHHHHHHHcCCCC
Q 004938 376 ---IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN-VISWTSMINA-FA-IHGDARNALIFFNKMKDESIDP 449 (722)
Q Consensus 376 ---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~-~~-~~g~~~~A~~~~~~m~~~g~~p 449 (722)
............-+.++.+|. +..+.+.++-...+... ...+.+++.. +. +......|.+++...-+. .|
T Consensus 297 ~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p 372 (652)
T KOG2376|consen 297 LLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HP 372 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CC
Confidence 000000112222345666654 45567777777776532 3344444443 22 233577788888777664 44
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHH--------HhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC------
Q 004938 450 NG--VTFIGVLYACSHAGLVDEGREIFA--------SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM------ 513 (722)
Q Consensus 450 ~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------ 513 (722)
.. +.....+......|+++.|.+++. .+.+ .+.. +.+...++.+|.+.+.-+-|.+++.+.
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 44 345555667778999999999998 4443 2333 456678888998888876666666654
Q ss_pred --CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHH
Q 004938 514 --PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 514 --~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
.-.+. ..+|.-+..--.++|+.++|...++++++.+|++......+..+|+... .+.|..+-+
T Consensus 450 ~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 450 QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 11222 2344444445567899999999999999999999999999998887653 445555443
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=2.3e-08 Score=94.89 Aligned_cols=158 Identities=11% Similarity=0.077 Sum_probs=73.4
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCC----hhHHHHHHHHHH
Q 004938 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD----LRVNNAIIDMYA 396 (722)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~----~~~~~~li~~~~ 396 (722)
|..-|...|-+|.|..+|..+.+.| .--......++..|-...++++|..+-..+.+.+-.+. ...|.-|...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 3344445555555555555554432 11222334444444444455555444444444332221 112333444444
Q ss_pred hcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004938 397 KCGSLESAREVFERMRRR---NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473 (722)
Q Consensus 397 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 473 (722)
...+.+.|..++.+..+. .+..--.+.+.+...|+++.|++.++...+.+..--..+...|..+|.+.|+.+++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445555555555554431 12222233344555666666666666665532111123445555566666666666666
Q ss_pred HHHhHh
Q 004938 474 FASMTN 479 (722)
Q Consensus 474 ~~~~~~ 479 (722)
+..+.+
T Consensus 272 L~~~~~ 277 (389)
T COG2956 272 LRRAME 277 (389)
T ss_pred HHHHHH
Confidence 655554
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=5e-11 Score=84.02 Aligned_cols=50 Identities=22% Similarity=0.489 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004938 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463 (722)
Q Consensus 414 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 463 (722)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.19 E-value=1.6e-06 Score=89.79 Aligned_cols=444 Identities=12% Similarity=0.100 Sum_probs=264.5
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Q 004938 118 FSFPPILKAIARAEGLLEGMQVHGLGTKL-GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQN 196 (722)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 196 (722)
..|..-+..+...+++..-+..|+..+.. .+.....+|...+......|-++-+.+++++-..-++..-+--|..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34666667777888888888888877664 23344567777888878888888899998888777777788888888999
Q ss_pred CChhHHHHHHHHHHHC------CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCC--HhHHHHHHHHHHhc
Q 004938 197 GLFDEVLNLFEEMKMS------NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV--ALD--AHLQSTLITMYANC 266 (722)
Q Consensus 197 g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~~~~~ 266 (722)
+++++|.+.+...... ..+.+...|.-+....++..+.-....+ +.+++.|+ -+| ...|++|.+-|.+.
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 9999998888776432 1233444566555555555443333322 22223332 223 35688888889999
Q ss_pred CChHHHHHHHHhcccC--CchHHHHHHHHHHhcCCHHHHHHHH-h---ccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 004938 267 GCMDMAKGLFDKVLLK--NLVVSTAMVSGYSRAGQVEDARLIF-D---QMVEKDLICWSAMISGYAENNHPQEALKLFNE 340 (722)
Q Consensus 267 g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~f-~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 340 (722)
|.+++|..+|++.... .+.-++.+.+.|+.-..-.-+..+= . .-.+.+...+ +-.+..|+.
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl-------------~~~~a~~e~ 328 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL-------------ELHMARFES 328 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH-------------HHHHHHHHH
Confidence 9999999888877554 3444555555554422211111110 0 0000111111 112222222
Q ss_pred HHhCC-----------CCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCC------ChhHHHHHHHHHHhcCCHHH
Q 004938 341 MQVCG-----------MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG------DLRVNNAIIDMYAKCGSLES 403 (722)
Q Consensus 341 m~~~g-----------~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 403 (722)
+...+ -+-+..++..-.. ...|+..+-...+.++++. +.| -...|..+.+.|-..|+++.
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 22211 0112223322222 2245556666667766654 122 23457778888888888888
Q ss_pred HHHHHHhcCCCC---h----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------C-C------HHHHHHHHH
Q 004938 404 AREVFERMRRRN---V----ISWTSMINAFAIHGDARNALIFFNKMKDESID----------P-N------GVTFIGVLY 459 (722)
Q Consensus 404 A~~~~~~~~~~~---~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-~------~~t~~~ll~ 459 (722)
|+.+|++..+-+ + .+|-.-...-.++.+++.|+++.++.....-. | . ...|...+.
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 888888876522 2 34555555566778888888887776542111 1 1 112333344
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C-C-CCCH-HHHHHHHHHHHH---c
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-P-F-APNV-VIWGSLMAACRV---H 532 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~-~p~~-~~~~~ll~~~~~---~ 532 (722)
.-...|-++....+++.+..-.-..|. ..-.....+.....++++.+.+++- + + -|++ ..|++.+.-+.+ .
T Consensus 486 leEs~gtfestk~vYdriidLriaTPq--ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQ--IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 444567777778888888763222232 2222333445667788999999886 2 2 3454 588887776543 3
Q ss_pred CCHHHHHHHHHHHHccCCCCC--chHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 533 GEIELAEFAAKQLLQLDPDHD--GALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 533 g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
..+|.|..+|+++++.-|... ..|...+..-.+-|.-..|..++++..
T Consensus 564 ~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 564 TKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 378999999999999877422 234455555566688888888888754
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=3.7e-09 Score=116.52 Aligned_cols=244 Identities=12% Similarity=0.035 Sum_probs=179.4
Q ss_pred CchHHHHHHHHHHhCCCCCCh-hhHHHHHHHHH---------ccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 004938 330 HPQEALKLFNEMQVCGMKPDK-VTMLSVISACA---------HLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399 (722)
Q Consensus 330 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 399 (722)
..++|+.+|++..+. .|+. ..+..+..++. ..+++++|...++.+++.+ +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 457899999998875 4544 34444443332 2345789999999998874 456778888888999999
Q ss_pred CHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 004938 400 SLESAREVFERMRR--R-NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREIFA 475 (722)
Q Consensus 400 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 475 (722)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998765 3 456788889999999999999999999988 466643 33344555667899999999999
Q ss_pred HhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 476 SMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETM-PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 476 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
++.+. .+| +...+..+...|...|++++|...++++ +..|+. ..++.+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 98762 334 3456778889999999999999999987 455554 44555666667777 47888788777643222
Q ss_pred CchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 553 DGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
+.....+..+|.-.|+-+.+... +++.+.|
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22333477788888888888777 7776654
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=9.4e-08 Score=97.47 Aligned_cols=267 Identities=13% Similarity=0.075 Sum_probs=178.3
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCch
Q 004938 291 VSGYSRAGQVEDARLIFDQMVEKDL---ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367 (722)
Q Consensus 291 i~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 367 (722)
..-+...+++.+..++++.+.+.|+ ..+..-|..+...|+..+-+.+=.+|.+. .+-...+|-++.--|...|+..
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcH
Confidence 3334445555555555666655443 34445566777777777766666666664 2335567777776677777777
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--R-NVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 368 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
+|++.+......+ +.-...|-.+...|+-.|.-|.|...+....+ + .-..+--+.--|.+.++...|.++|.+...
T Consensus 330 eARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 330 EARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 8877777665532 12244667777777777888877777665432 1 111122233456778888888888888776
Q ss_pred cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcC-C----CCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-C
Q 004938 445 ESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYN-I----PPKYEHYGCMVDLFGRANLLREALELVETM-PF-A 516 (722)
Q Consensus 445 ~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~ 516 (722)
+.|+ +...+-+.-...+.+.+.+|..+|+.....-. + .....+++.|..+|.+.+.+++|+..+++. .. +
T Consensus 409 --i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 409 --IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred --cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 5665 44555555556667888888888887763100 0 112345788888999999999999999887 33 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHH
Q 004938 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSN 561 (722)
Q Consensus 517 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 561 (722)
.|..++.++.-.+...|+++.|.+.|.+++.+.|++..+-..|..
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 477888888888999999999999999999999998655555543
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.7e-07 Score=91.76 Aligned_cols=267 Identities=11% Similarity=0.015 Sum_probs=169.3
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHH---HHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004938 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM---ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA 359 (722)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 359 (722)
|+.....+.+.+...|+.++|...|++...-|+.+...| .-.+.+.|+.+..-.+...+.... .-...-|..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 444555555555555555555555665543333222221 223345566666666555554321 1111111111222
Q ss_pred HHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHH
Q 004938 360 CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNAL 436 (722)
Q Consensus 360 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 436 (722)
.....+++.|..+-+..++.+ +.+...+-.-...+...|+.++|.-.|..... -+..+|.-|+.+|...|...+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 233455566665555555542 22333343334556677888888888876543 46778888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 437 IFFNKMKDESIDPNGVTFIGVL-YACS-HAGLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 437 ~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
-+-+..... +..+..+...+. ..|. ....-++|..++++..+ +.|+ ....+.+...+.+.|..+++..++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 877765553 233444444442 2332 33446789999887764 5665 355677888899999999999999987
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch
Q 004938 514 -PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 514 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 555 (722)
...||....+.|...++..+.+++|...|..++.++|++..+
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 677999999999999999999999999999999999998644
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=1.4e-08 Score=99.16 Aligned_cols=199 Identities=15% Similarity=0.103 Sum_probs=105.5
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 395 (722)
..+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+....+.. +
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~------------- 96 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-P------------- 96 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C-------------
Confidence 345555566666666666666666655432 1123334444444444555555555554444432 1
Q ss_pred HhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004938 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
.+...+..+...+...|++++|++.|++.......| ....+..+..++...|++++|...+
T Consensus 97 ------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 97 ------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 223344445555555555555555555555432112 1233444555566666666666666
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004938 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549 (722)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 549 (722)
+...+ ..+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+.+..
T Consensus 159 ~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 66654 22333445556666666666666666666655 2222 34455555666666777777777766665543
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=8.7e-08 Score=100.73 Aligned_cols=245 Identities=16% Similarity=0.186 Sum_probs=138.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcc-hHHHHHHHHHhcCCch
Q 004938 254 HLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLI-CWSAMISGYAENNHPQ 332 (722)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~ 332 (722)
.+...|..+|...|+++.|..+++...+. ..+.+- +..+.+. ..+.+...|...++++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~--------------------l~k~~G-~~hl~va~~l~~~a~~y~~~~k~~ 258 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRI--------------------LEKTSG-LKHLVVASMLNILALVYRSLGKYD 258 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH--------------------HHHccC-ccCHHHHHHHHHHHHHHHHhccHH
Confidence 34445667777777777777777664322 000000 1111111 1224556677777777
Q ss_pred HHHHHHHHHHhC-----C-CCC-ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 004938 333 EALKLFNEMQVC-----G-MKP-DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR 405 (722)
Q Consensus 333 ~A~~~~~~m~~~-----g-~~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 405 (722)
+|..+|+++..- | ..| -..+++.+..+|.+.|++++|...++.+.+
T Consensus 259 eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~--------------------------- 311 (508)
T KOG1840|consen 259 EAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE--------------------------- 311 (508)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH---------------------------
Confidence 777777776531 1 011 112333344445555555555544443322
Q ss_pred HHHHhcC---CCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCH----HHHHHHHHHHHhcCCHHHHHHHH
Q 004938 406 EVFERMR---RRNV-ISWTSMINAFAIHGDARNALIFFNKMKD---ESIDPNG----VTFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 406 ~~~~~~~---~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
+++... .+.+ .-++.++..+...+++++|..++++..+ .-..++. .+++.+...+.+.|.+++|.++|
T Consensus 312 -I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~ 390 (508)
T KOG1840|consen 312 -IYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY 390 (508)
T ss_pred -HHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 111100 0111 1234444555566666666666655433 1122332 36777777778888888888887
Q ss_pred HHhHhhc----C-CCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 004938 475 ASMTNEY----N-IPP-KYEHYGCMVDLFGRANLLREALELVETM--------PFAPNV-VIWGSLMAACRVHGEIELAE 539 (722)
Q Consensus 475 ~~~~~~~----~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~g~~~~a~ 539 (722)
++++... + ..+ ...+++.|...|.+.+..++|.++|.+. +..|+. .+|..|...|...|++|.|+
T Consensus 391 k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 391 KKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred HHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 7776532 1 111 2345677788888888888887777764 344554 68999999999999999999
Q ss_pred HHHHHHHc
Q 004938 540 FAAKQLLQ 547 (722)
Q Consensus 540 ~~~~~~~~ 547 (722)
++.+++..
T Consensus 471 ~~~~~~~~ 478 (508)
T KOG1840|consen 471 ELEEKVLN 478 (508)
T ss_pred HHHHHHHH
Confidence 99998873
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.10 E-value=9.7e-09 Score=113.23 Aligned_cols=211 Identities=14% Similarity=0.076 Sum_probs=164.6
Q ss_pred CCchHHHHHHHHHHHcCCCCChhHHHHHHHHHH---------hcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCC
Q 004938 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA---------KCGSLESAREVFERMRR---RNVISWTSMINAFAIHGD 431 (722)
Q Consensus 364 g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 431 (722)
+++++|...++++++.. +.+...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34678999999998863 334555666665544 23458899999998875 466788888888999999
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHH
Q 004938 432 ARNALIFFNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRANLLREALEL 509 (722)
Q Consensus 432 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~ 509 (722)
+++|+..|++..+ +.|+. ..+..+..++...|++++|...++.+.+ +.|+ ...+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999998 46764 4677888899999999999999999986 3343 33344455567778999999999
Q ss_pred HHhC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 510 VETM--PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 510 ~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+++. ...|+ ...+..+...+...|+.++|...++++....|++......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9887 22354 4556777778889999999999999998888988888888888888888 4888877777653
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=2.7e-09 Score=100.83 Aligned_cols=230 Identities=16% Similarity=0.133 Sum_probs=175.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 004938 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398 (722)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 398 (722)
+.|..+|.+.|.+.+|.+.|+..++. .|-..||..+-++|.+..+++.|..++.+-++. ++.++.........+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45778888888888888888887775 566677888888888888888888888877765 455665566677777778
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004938 399 GSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475 (722)
Q Consensus 399 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 475 (722)
++.++|.++|+...+ .|+.+...+..+|.-.++++-|+.+|+++.+.|+. +...|..+.-+|...+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 888888888887765 45566666777788888888888888888888753 55677777777888888877777777
Q ss_pred HhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch
Q 004938 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 476 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 555 (722)
+.... --.|+ .-..+|-.|......-||+..|.+.|+-++..+|++..+
T Consensus 383 RAlst-at~~~------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQPG------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCcc------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 66541 11111 123567777777777888999999999999999999999
Q ss_pred HHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 556 LVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 556 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
+++|+-+-.+.|+.++|..++...+...
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999988889999999999988877643
No 72
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.07 E-value=5.6e-07 Score=93.95 Aligned_cols=192 Identities=18% Similarity=0.257 Sum_probs=106.5
Q ss_pred HHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 004938 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436 (722)
Q Consensus 357 l~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 436 (722)
+.+......+.+|..++..+..... ....|..+.+-|+..|+++.|+++|.+.- .++--|..|.+.|+++.|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 3344445566666666665554421 22334556666777777777777665532 2344456666777777666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 004938 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516 (722)
Q Consensus 437 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 516 (722)
++-.+... .......|..-..-+-+.|.+.+|.+++-.+- .|+ .-|.+|-+.|..++.++++++-.
T Consensus 812 kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h-- 877 (1636)
T KOG3616|consen 812 KLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHH-- 877 (1636)
T ss_pred HHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhC--
Confidence 66544321 22223345444455556666666666654332 133 23566667777777666666652
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHH
Q 004938 517 PN--VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 517 p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
|+ ..|...+..-+-..|+++.|+..|-++ .-+..-.++|...+.|++|.++-+
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 22 234445555566666666666665443 234455566666666666666544
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=8e-08 Score=96.93 Aligned_cols=227 Identities=12% Similarity=0.006 Sum_probs=155.9
Q ss_pred cCCchHHHHHHHHHHhCC-CCCC--hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 004938 328 NNHPQEALKLFNEMQVCG-MKPD--KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA 404 (722)
Q Consensus 328 ~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 404 (722)
.+..+.++.-+.+++... ..|+ ...|......+...|+.++|...+..+++.. +.+...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345677777777777532 2222 2346666667788899999998888888864 45678889999999999999999
Q ss_pred HHHHHhcCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 004938 405 REVFERMRR--R-NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY 481 (722)
Q Consensus 405 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 481 (722)
...|++..+ | +..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|.+.|.....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 999998864 3 457888888889999999999999999887 466654322222334556789999999977654
Q ss_pred CCCCCcchHHHHHHHHHhcCCH--HHHHHHHHhC-C----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-C
Q 004938 482 NIPPKYEHYGCMVDLFGRANLL--REALELVETM-P----FAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD-H 552 (722)
Q Consensus 482 ~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~ 552 (722)
..+|+... ..++..+ .|++ +++.+.+.+. . ..| ....|..+...+...|++++|+..|+++++.+|. .
T Consensus 194 ~~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 194 KLDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred hCCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 33343322 2333333 3444 3334333322 1 122 2357889999999999999999999999999974 4
Q ss_pred CchHHHHHHH
Q 004938 553 DGALVLLSNI 562 (722)
Q Consensus 553 ~~~~~~l~~~ 562 (722)
...-..+..+
T Consensus 271 ~e~~~~~~e~ 280 (296)
T PRK11189 271 VEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=6.6e-09 Score=98.28 Aligned_cols=190 Identities=12% Similarity=0.104 Sum_probs=161.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcC
Q 004938 389 NAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI-GVLYACSHAG 465 (722)
Q Consensus 389 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g 465 (722)
+-+..+|.+.|-+.+|.+.|+.-.+ +-+.||-.|-..|.+..++..|+.+|.+-++ ..|-.+||. .....+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHH
Confidence 5677889999999999999987653 7788999999999999999999999999888 477777764 5667888899
Q ss_pred CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004938 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM---PFAPNVVIWGSLMAACRVHGEIELAEFAA 542 (722)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 542 (722)
+.++|.++++...+ ..+.+++...|+...|.-.++.+-|+.+++++ +. .+...|+.+.-.|.-.++++.++..+
T Consensus 305 ~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999987 55667888899999999999999999999986 53 36778888888899999999999999
Q ss_pred HHHHccC--CC-CCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 543 KQLLQLD--PD-HDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 543 ~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
++++..- |+ -...|++|+.+....|++.-|.+.|+.....+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 9998753 33 34588899999999999999999998876543
No 75
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=4.5e-06 Score=90.47 Aligned_cols=488 Identities=13% Similarity=0.138 Sum_probs=291.7
Q ss_pred HHHHhccCCCCCCCChHHHHHHhccCCC--CCcchHH----HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHH
Q 004938 52 LLLTSFSLPTTTPSSLYYALSIFSQIPA--PPSRVSN----KFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125 (722)
Q Consensus 52 ~li~~~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 125 (722)
.+.+.|.+ . |-+..|+..+..+.. +.++.-+ --+-.|.-.-.++.+++.++.|...+++.|..+...+..
T Consensus 611 ~IAqLCEK--A--GL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 611 EIAQLCEK--A--GLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHh--c--chHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444445 5 666666666654432 1111000 012233334456777777888877766666555544444
Q ss_pred HHHhcCChHHHHHHHHHHHHh-----------CCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCC---------------
Q 004938 126 AIARAEGLLEGMQVHGLGTKL-----------GFGSDPFVQTGLVGMYGACGKILDARLMFDKMS--------------- 179 (722)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--------------- 179 (722)
-|...-..+...++|+..... ++..|+.+.-..|.+-++.|++.+..++.++-.
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 444433344444455443321 346677788888999999999999888866542
Q ss_pred CC----------------CcccH------HHHHHHHHhCCChhHHHHHHHHHH---------------HCCCCCCHhHHH
Q 004938 180 YR----------------DIVPW------SVMIDGYFQNGLFDEVLNLFEEMK---------------MSNVEPDEMVLS 222 (722)
Q Consensus 180 ~~----------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~---------------~~g~~p~~~t~~ 222 (722)
-. |.+.| --.|..|++.=++...-.+.-.+. -.|.- ...
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~----~~d 842 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQF----PVD 842 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccC----ChH
Confidence 00 11111 123455555433322222211111 12222 234
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH-HHH--------HHHhc-ccCCc--------
Q 004938 223 KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM-AKG--------LFDKV-LLKNL-------- 284 (722)
Q Consensus 223 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~--------~~~~~-~~~~~-------- 284 (722)
-+..-+-+.+++..-...++..+..|.. |+.++|+|...|...++-.+ -++ +.-+. .++|+
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 4566677778888888888888888854 88888888887776543221 110 00011 11111
Q ss_pred ---------------hHHHHHHHHHHhcCCHHHHHHHHhcc-----------------CCCCcchHHHHHHHHHhcCCch
Q 004938 285 ---------------VVSTAMVSGYSRAGQVEDARLIFDQM-----------------VEKDLICWSAMISGYAENNHPQ 332 (722)
Q Consensus 285 ---------------~~~~~li~~~~~~g~~~~A~~~f~~~-----------------~~~~~~~~~~li~~~~~~g~~~ 332 (722)
..|....+-+.+..+.+--.+++.+- ...|+..-+.-+.++...+-+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 11222333344455555444444221 1125556667788888889899
Q ss_pred HHHHHHHHHHhCCCCC--ChhhHHHHHH---------------------------HHHccCCchHHHHHHHHHHHcCCCC
Q 004938 333 EALKLFNEMQVCGMKP--DKVTMLSVIS---------------------------ACAHLGVLDQAQRIHLYIDKNAFGG 383 (722)
Q Consensus 333 ~A~~~~~~m~~~g~~p--~~~t~~~ll~---------------------------~~~~~g~~~~a~~i~~~~~~~~~~~ 383 (722)
+-++++++..-..-.- +...-+.++- .+...+-+++|..+|.. +..
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkk-----f~~ 1076 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKK-----FDM 1076 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHH-----hcc
Confidence 9999988876432111 1111111211 11222233344444332 223
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 463 (722)
+....+.|++ .-+.++.|.+.-++..+ ...|..+..+-.+.|...+|++-|-+. -|...|..++..+++
T Consensus 1077 n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~ 1145 (1666)
T KOG0985|consen 1077 NVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASR 1145 (1666)
T ss_pred cHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHh
Confidence 3333333433 34566666666666554 457999999999999999999877542 356679999999999
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 543 (722)
.|.+++-..++..++++ .-+|..+ +.|+-+|++.+++.|-++++. .||..-...+.+-|...|.++.|.-+|.
T Consensus 1146 ~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1146 TGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred cCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 99999999999988774 5556554 689999999999999888874 4788888889999999999999998886
Q ss_pred HHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 544 QLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 544 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
.. +.|..|+..+...|.+..|...-++.
T Consensus 1219 ~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1219 NV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred Hh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 54 56778888888888888877655544
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.04 E-value=3e-06 Score=88.09 Aligned_cols=227 Identities=11% Similarity=0.016 Sum_probs=139.6
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCC---cccHHHHHHHHHhCCChhHHHHH
Q 004938 129 RAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRD---IVPWSVMIDGYFQNGLFDEVLNL 205 (722)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~ 205 (722)
..+.+..+++..+.+++ +.+....+.....-.+...|+-++|......-...| .+.|..+.-.+-...++++|+..
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34556666666666665 333333444333344556788888888877665544 45599888888888999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhccc----
Q 004938 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL---- 281 (722)
Q Consensus 206 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 281 (722)
|+.....+ +-|...+.-+--.-++.++++..........+.. +.....|..++.++.-.|+...|..+.+...+
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99987753 2344455544444456777777777666666642 33456677788888888888888888766532
Q ss_pred -CCchHHHH------HHHHHHhcCCHHHHHHHHhccCCC--Ccc-hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChh
Q 004938 282 -KNLVVSTA------MVSGYSRAGQVEDARLIFDQMVEK--DLI-CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV 351 (722)
Q Consensus 282 -~~~~~~~~------li~~~~~~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 351 (722)
++...+.- ......+.|..++|.+.+...... |-. .-.+-...+.+.++.++|..++..++.. .||..
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence 22222221 122345666777777666654433 222 2233445566677777777777777664 46665
Q ss_pred hHHHHHHHH
Q 004938 352 TMLSVISAC 360 (722)
Q Consensus 352 t~~~ll~~~ 360 (722)
-|...+..+
T Consensus 254 ~Yy~~l~~~ 262 (700)
T KOG1156|consen 254 DYYEGLEKA 262 (700)
T ss_pred HHHHHHHHH
Confidence 555544433
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.02 E-value=2.8e-08 Score=90.14 Aligned_cols=163 Identities=18% Similarity=0.145 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 496 (722)
+...+.-+|.+.|+...|..-+++.++ ..|+. .++..+...|.+.|..+.|.+.|+...+ --+.+..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHH
Confidence 344566788888999999999988888 46665 4788888888999999999999998886 445567888888999
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchH
Q 004938 497 FGRANLLREALELVETMPFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572 (722)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 572 (722)
++..|++++|...|++.-..|+ ..+|..+.....+.|+.+.|+..+++.++.+|+.+.....++....+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999988833333 467888887778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 004938 573 GELRKSMKERGI 584 (722)
Q Consensus 573 ~~~~~~m~~~g~ 584 (722)
...++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998887664
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=1e-06 Score=84.68 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHH-HHHHH
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG-CMVDL 496 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~ 496 (722)
--.+|.+.+.-..++++.+-.++....- +.-|..--..+..+.+..|.+.+|.++|-.+.. -.+ .+..+|. .|...
T Consensus 361 GRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~i-kn~~~Y~s~LArC 437 (557)
T KOG3785|consen 361 GRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEI-KNKILYKSMLARC 437 (557)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhh-hhhHHHHHHHHHH
Confidence 3445555555566677777776666553 222333333466777788888888888876653 122 2334443 45677
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 497 FGRANLLREALELVETMPFAPNVVIWGSLM-AACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
|.+.|..+-|++++-++....+..+...++ +-|.+.+++--|-++|..+-.++|..
T Consensus 438 yi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 438 YIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 888888888888888875444555544444 45888888888888888888888764
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=2.8e-08 Score=100.25 Aligned_cols=212 Identities=12% Similarity=0.056 Sum_probs=154.5
Q ss_pred CCchHHHHHHHHHHHcC-CCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHH
Q 004938 364 GVLDQAQRIHLYIDKNA-FGG--DLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALI 437 (722)
Q Consensus 364 g~~~~a~~i~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 437 (722)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666676532 222 245677888889999999999999998764 467899999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 004938 438 FFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--P 514 (722)
Q Consensus 438 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~ 514 (722)
.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 5776 457888888899999999999999999863 343322222233345678899999999765 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------ccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 515 FAPNVVIWGSLMAACRVHGEIELAEFAAKQLL-------QLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 515 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
..|+...| .......|+...+ ..++.+. ++.|+.+.+|..++.+|...|++++|...+++..+.++
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33333223 2222334554433 2333333 45566778999999999999999999999999987553
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.98 E-value=7.1e-06 Score=87.17 Aligned_cols=431 Identities=14% Similarity=0.039 Sum_probs=274.6
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCC----CC
Q 004938 107 KMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY----RD 182 (722)
Q Consensus 107 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~ 182 (722)
+++...++-|...|..+--++...|+++.+-+.|++....- ......|+.+-..|..+|.-..|..+.++-.. |+
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps 391 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS 391 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC
Confidence 33344466678888888888999999999999999887643 34567789999999999999999999986543 33
Q ss_pred ccc-HHHHHHHHHh-CCChhHHHHHHHHHHHC------CCCCCHhHHHHHHHHHHcc----C-------ChHHHHHHHHH
Q 004938 183 IVP-WSVMIDGYFQ-NGLFDEVLNLFEEMKMS------NVEPDEMVLSKILSACSRA----G-------NLSYGEAVHEF 243 (722)
Q Consensus 183 ~~~-~~~li~~~~~-~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~----g-------~~~~a~~~~~~ 243 (722)
..+ +-..-..|.+ -+..+++++.-.+.... -+.| ..|..+--+|... . ...++.+.++.
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~--~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKP--RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 233 3222233333 46677777776666541 1222 2333333333211 1 13456777788
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhccc----CCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchH-
Q 004938 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL----KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICW- 318 (722)
Q Consensus 244 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~- 318 (722)
.++.+. .|+.+.--+.--|+..++++.|.+..++... .+...|..+.-.+.-.+++.+|+.+.+...+.-..-+
T Consensus 470 av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 470 AVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred HHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 777653 2444444455578888999999988877743 3678999999999999999999999887654422222
Q ss_pred --HHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHH--cCCCCChhHHHHHHHH
Q 004938 319 --SAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK--NAFGGDLRVNNAIIDM 394 (722)
Q Consensus 319 --~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~--~~~~~~~~~~~~li~~ 394 (722)
..-+..-..-++.++|+.....+... --+...+. ..++-....+....+.- ......+.++..+...
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 22233344568888888888877641 00000000 11111111111111100 0111112233322222
Q ss_pred HH---hcCCHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc
Q 004938 395 YA---KCGSLESAREVFERMRRRN------VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLYACSHA 464 (722)
Q Consensus 395 ~~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 464 (722)
.. +.-..+.....+...+.|+ ...|......+...++.++|...+.+... +.|-. ..|......+...
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVK 697 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHH
Confidence 21 1111122222222222333 23566777788889999999988888766 44543 3555555677788
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 004938 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE--LVETM-PFAP-NVVIWGSLMAACRVHGEIELAEF 540 (722)
Q Consensus 465 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 540 (722)
|..++|.+.|..... -.|.++....++..++.+.|+..-|.. ++..+ .+.| +...|..|...+.+.|+.+.|-+
T Consensus 698 ~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 999999999988864 334456788899999999998776766 88777 6677 56899999999999999999999
Q ss_pred HHHHHHccCCCCCc
Q 004938 541 AAKQLLQLDPDHDG 554 (722)
Q Consensus 541 ~~~~~~~~~p~~~~ 554 (722)
.|..++++++.+|.
T Consensus 776 cf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 776 CFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHhhccCCCc
Confidence 99999999987763
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=8.2e-06 Score=78.60 Aligned_cols=213 Identities=14% Similarity=0.075 Sum_probs=136.4
Q ss_pred CchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-------HHHHHH
Q 004938 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD-------ARNALI 437 (722)
Q Consensus 365 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~ 437 (722)
+-+.|.+++--+.+. -|. .--.|+-.|.+.+++++|..+.+++...++.-|-.-.-.++..|+ ..-|.+
T Consensus 269 ngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred CCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 345666666555442 222 223456668999999999999998875444433322223334443 334444
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-C
Q 004938 438 FFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP-F 515 (722)
Q Consensus 438 ~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~ 515 (722)
.|+-.-..+..-|.+ --.++.+++.-.-++++.+-++..+.. |-...|...+ .+..+++..|.+.+|+++|-++. .
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh
Confidence 444433444443332 234455555666788999999998876 4444444444 57889999999999999998882 1
Q ss_pred C-CCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHccCCCCC-chHHHHHHHhhhCCCcchHHHHHHHHHhCCCc
Q 004938 516 A-PNVVIWGSLMAAC-RVHGEIELAEFAAKQLLQLDPDHD-GALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585 (722)
Q Consensus 516 ~-p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 585 (722)
+ .|..+|.+++.-| ...|..+.|..++-+. ..|.+. .....+++.|.+++.+=-|.+.|+.+......
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 2 3567777766654 5688898888876443 223332 23447788899999999999999988765543
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.97 E-value=5.3e-06 Score=86.89 Aligned_cols=369 Identities=15% Similarity=0.161 Sum_probs=225.7
Q ss_pred hCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHH
Q 004938 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 243 (722)
..|+++.|..-|-+.. ..--.|.+......+.+|+.+++.++.... -.--|..+..-|+..|+++.|+++|-+
T Consensus 718 ~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 718 QIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHh
Confidence 4455666655553321 112234556677888999999988876532 334577788889999999999998854
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC--CchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHH
Q 004938 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK--NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321 (722)
Q Consensus 244 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l 321 (722)
. ..++--|+||.+.|++++|.++-.+...| ....|-+-..-+-+.|++.+|.+++-.+..|+. -
T Consensus 791 ~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----a 856 (1636)
T KOG3616|consen 791 A---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----A 856 (1636)
T ss_pred c---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----H
Confidence 2 34567789999999999999998888666 455677777778899999999999998888864 4
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 004938 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401 (722)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 401 (722)
|..|-+.|..+..+++..+-.... -..|-..+..-+...|++..|+.-|-... -|.+-+++|-..+-|
T Consensus 857 iqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw 924 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELW 924 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhH
Confidence 778889999999988877643221 12455566667778899999887765443 256778899999999
Q ss_pred HHHHHHHHhcCCCCh-----HHHHHH------HHHHHHcCCHHH-------------HHHHHHHHHHcCCCCCHHHHHHH
Q 004938 402 ESAREVFERMRRRNV-----ISWTSM------INAFAIHGDARN-------------ALIFFNKMKDESIDPNGVTFIGV 457 (722)
Q Consensus 402 ~~A~~~~~~~~~~~~-----~~~~~l------i~~~~~~g~~~~-------------A~~~~~~m~~~g~~p~~~t~~~l 457 (722)
++|.++-+.--..|. ..|.-- +..+-++|-.+. |..+-+-..+. -.|. ....+
T Consensus 925 ~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~~--vhlk~ 1001 (1636)
T KOG3616|consen 925 EDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMGE--VHLKL 1001 (1636)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCcc--chhHH
Confidence 999988765432222 223211 112223333333 33322222211 1111 12223
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhc--CC-----CCCcchH---------HHHHHHHHhcCCHHHHHHHHHhCCCCCCH--
Q 004938 458 LYACSHAGLVDEGREIFASMTNEY--NI-----PPKYEHY---------GCMVDLFGRANLLREALELVETMPFAPNV-- 519 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~--~~-----~~~~~~~---------~~li~~~~~~g~~~~A~~~~~~~~~~p~~-- 519 (722)
..-+...|.+++|...+-+.++-. ++ .|+..-. ..-+.++.+.+++..|.++-+.- .||.
T Consensus 1002 a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h--~~~~l~ 1079 (1636)
T KOG3616|consen 1002 AMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH--CEDLLA 1079 (1636)
T ss_pred hhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh--ChhhhH
Confidence 334567888998887776665421 10 0110000 01233444555555555544433 2222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHH
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 578 (722)
.++..-..+....|++.+|+.++-++ ..|+ ...+-|...+.|.+|.++-+.
T Consensus 1080 dv~tgqar~aiee~d~~kae~fllra--nkp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1080 DVLTGQARGAIEEGDFLKAEGFLLRA--NKPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred HHHhhhhhccccccchhhhhhheeec--CCCc------hHHHHHHHhccChHHHHHHHh
Confidence 23333344445577777777665332 3454 234456778889988887654
No 83
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=3.5e-08 Score=101.02 Aligned_cols=248 Identities=13% Similarity=0.076 Sum_probs=181.1
Q ss_pred HccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHH
Q 004938 361 AHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALI 437 (722)
Q Consensus 361 ~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 437 (722)
.+.|++.+|.-.|+..++.+ +.+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45677777777777777764 45667777777777777777777777777665 456677777778888888888988
Q ss_pred HHHHHHHcCCC-----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004938 438 FFNKMKDESID-----P---NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509 (722)
Q Consensus 438 ~~~~m~~~g~~-----p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 509 (722)
.++.-+....+ + +...-.. .............++|-.+....+..+|++++.+|.-+|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88887653210 0 0000000 122233344556677777776566668999999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccC
Q 004938 510 VETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587 (722)
Q Consensus 510 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 587 (722)
|+.+ ..+| |..+||-|...+....+.++|+.+|.+++++.|....+.++|+-.|...|.++||.+.+=......-+..
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 9988 6777 5689999999999999999999999999999999999999999999999999999998877654322100
Q ss_pred CcccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHh
Q 004938 588 RACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627 (722)
Q Consensus 588 ~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 627 (722)
. ..+..++ ...|++.|...+..|.
T Consensus 533 ~---------------~~~~~~~-se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 533 N---------------HNKAPMA-SENIWQTLRLALSAMN 556 (579)
T ss_pred c---------------cccCCcc-hHHHHHHHHHHHHHcC
Confidence 0 0011222 4678888876666654
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.1e-05 Score=79.52 Aligned_cols=261 Identities=13% Similarity=0.033 Sum_probs=188.7
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhH-HHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM-LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li 392 (722)
|+.....+...+...|+.++|+..|++.+.. .|+..+- ....-.+.+.|+.+....+...+.... ..+..-|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 7788889999999999999999999988763 4543321 111122356777777777776665432 11222222223
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH
Q 004938 393 DMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVD 468 (722)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 468 (722)
......++++.|..+-++..+ +++..+-.-...+.+.|+.++|.-.|+..+. +.| +..+|..|+.+|...|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHH
Confidence 334456788888888887765 4445555555678889999999999998887 565 4578999999999999999
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHH-HHHHh-cCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004938 469 EGREIFASMTNEYNIPPKYEHYGCMV-DLFGR-ANLLREALELVETM-PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQ 544 (722)
Q Consensus 469 ~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 544 (722)
+|.-.-+...+ -++.+..+...+. +.+.- ...-++|.+++++. .++|+. ...+.+...|...|..+.+..++++
T Consensus 386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99888777766 3445555555542 33332 23346788888887 778875 4667777788999999999999999
Q ss_pred HHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 545 LLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 545 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.+...|++ ..++.|++++...+.+.+|.+.|......
T Consensus 464 ~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 464 HLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999876 58889999999999999999998877654
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.92 E-value=5.8e-06 Score=88.31 Aligned_cols=255 Identities=16% Similarity=0.142 Sum_probs=157.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPD-KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 395 (722)
++..+...|-..|++++|++++++.++. .|+ ...|..-.+.+-+.|++.+|...++.+.+.. ..|..+-+..+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHH
Confidence 3455677888999999999999999886 565 4567777888999999999999999998875 46778888888999
Q ss_pred HhcCCHHHHHHHHHhcCCCCh----------HHH--HHHHHHHHHcCCHHHHHHHHHHHHHc--CC---CCC--------
Q 004938 396 AKCGSLESAREVFERMRRRNV----------ISW--TSMINAFAIHGDARNALIFFNKMKDE--SI---DPN-------- 450 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~p~-------- 450 (722)
.++|++++|.+++....+++. ..| ..-..+|.+.|++..|++.|....+. .+ +-|
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK 352 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRK 352 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhh
Confidence 999999999999988876541 133 33456788999999998877665441 11 122
Q ss_pred --HHHHHHHHHHHHhcC-------CHHHHHHHHHHhHhhcCCCCCcch-----------HHHHHHHH---HhcCCHHHHH
Q 004938 451 --GVTFIGVLYACSHAG-------LVDEGREIFASMTNEYNIPPKYEH-----------YGCMVDLF---GRANLLREAL 507 (722)
Q Consensus 451 --~~t~~~ll~a~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~li~~~---~~~g~~~~A~ 507 (722)
..+|..++...-+.. -...|.+++-.+-........... -..+-.-. .+...-+++.
T Consensus 353 ~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~ 432 (517)
T PF12569_consen 353 MTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAE 432 (517)
T ss_pred ccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHH
Confidence 223444443322211 112344444444321100000000 00000000 0111111111
Q ss_pred HHHH-----------hC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcc
Q 004938 508 ELVE-----------TM------PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570 (722)
Q Consensus 508 ~~~~-----------~~------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 570 (722)
..-. +. +..||+.- ..|+ ....=+++|.++++-+.+..|++..+|..--.+|.+.|++-
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~L 508 (517)
T PF12569_consen 433 KAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYL 508 (517)
T ss_pred HHHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHH
Confidence 1110 00 12222211 1111 22334788999999999999999999999999999999998
Q ss_pred hHHHHHHH
Q 004938 571 DVGELRKS 578 (722)
Q Consensus 571 ~a~~~~~~ 578 (722)
-|.+.++.
T Consensus 509 LaLqaL~k 516 (517)
T PF12569_consen 509 LALQALKK 516 (517)
T ss_pred HHHHHHHh
Confidence 88876653
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.89 E-value=4.4e-05 Score=79.71 Aligned_cols=128 Identities=20% Similarity=0.222 Sum_probs=82.5
Q ss_pred CChHHHHH--HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchH
Q 004938 414 RNVISWTS--MINAFAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490 (722)
Q Consensus 414 ~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 490 (722)
|....|.. ++..|-..|+++.|..+.+..+. ..|+.+ -|..-.+.+.+.|++++|..++++..+ -..+|...-
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~IN 442 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAIN 442 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHH
Confidence 34444544 45667788888888888888777 367654 455666778888888888888888875 444555444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CCC--------HHHHHHH--HHHHHHcCCHHHHHHHHHHH
Q 004938 491 GCMVDLFGRANLLREALELVETMPF-APN--------VVIWGSL--MAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 491 ~~li~~~~~~g~~~~A~~~~~~~~~-~p~--------~~~~~~l--l~~~~~~g~~~~a~~~~~~~ 545 (722)
+--+.-..|+.+.++|.++.....- .-+ ...|-.+ ..+|.+.|++.+|++-+..+
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 3555666788888888887766511 101 2345444 33567777777776544433
No 87
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=0.00012 Score=79.79 Aligned_cols=411 Identities=10% Similarity=0.100 Sum_probs=236.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCC--C-----CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 004938 155 QTGLVGMYGACGKILDARLMFDKMSY--R-----DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227 (722)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~f~~m~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 227 (722)
+..+...|.+.|-...|++.+..+.. + +...-..++ .|.-.-.++++++.++.|...+++-|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44556677778888888877776653 1 111122222 344445678888888888888888888877777777
Q ss_pred HHccCChHHHHHHHHHHHHc-----------CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC--------------
Q 004938 228 CSRAGNLSYGEAVHEFIIDN-----------NVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-------------- 282 (722)
Q Consensus 228 ~~~~g~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------- 282 (722)
|...-..+.-.++|+..... ++.-|+.+.--.|.+.++.|++.+.+++.++-.--
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 77666666667777665432 34556777777888888999998888886554111
Q ss_pred ----------CchHHHHHHHHHHhcCCHHHHHHHHhccCCC----------------------------CcchHHHHHHH
Q 004938 283 ----------NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK----------------------------DLICWSAMISG 324 (722)
Q Consensus 283 ----------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----------------------------~~~~~~~li~~ 324 (722)
|..-+..=+..|.-.++..+-.++|-+-..| ..+.-+-|..-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 1111111111122222222222222221111 11122333333
Q ss_pred HHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHH----------HHHHHHHHHc-----------C---
Q 004938 325 YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA----------QRIHLYIDKN-----------A--- 380 (722)
Q Consensus 325 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a----------~~i~~~~~~~-----------~--- 380 (722)
.-+.++..--+.+++.....|. -|..|++++...|...++-.+- ..+=....+. |
T Consensus 848 vEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 4455555556666777777774 4778888888777654432211 1111111111 0
Q ss_pred -----CCCChhHHHHHHHHHHhcCCHHHHHHHHHh-----------cC------CCChHHHHHHHHHHHHcCCHHHHHHH
Q 004938 381 -----FGGDLRVNNAIIDMYAKCGSLESAREVFER-----------MR------RRNVISWTSMINAFAIHGDARNALIF 438 (722)
Q Consensus 381 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----------~~------~~~~~~~~~li~~~~~~g~~~~A~~~ 438 (722)
+...-..|..+...+.+..+.+-=.+++.+ .. ..|+..-+.-+.++...+-+.+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 011122333344444444444433333321 11 14555666677788888888888888
Q ss_pred HHHHHHcCCCCC-HHHHHH----------------------------HHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcch
Q 004938 439 FNKMKDESIDPN-GVTFIG----------------------------VLYACSHAGLVDEGREIFASMTNEYNIPPKYEH 489 (722)
Q Consensus 439 ~~~m~~~g~~p~-~~t~~~----------------------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 489 (722)
+++..-..-.-+ ...... +...+...+.+++|..+|+..-. +...
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~------n~~A 1080 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM------NVSA 1080 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc------cHHH
Confidence 888764211100 111111 11223344556666666654321 1222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCc
Q 004938 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW 569 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 569 (722)
.+.|+ ...+.++.|.++-++.. .+..|..+..+-.+.|.+.+|.+-|-++ ++++.|...+++..+.|+|
T Consensus 1081 ~~VLi---e~i~~ldRA~efAe~~n---~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~ 1149 (1666)
T KOG0985|consen 1081 IQVLI---ENIGSLDRAYEFAERCN---EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKY 1149 (1666)
T ss_pred HHHHH---HHhhhHHHHHHHHHhhC---ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcH
Confidence 22222 24566777777776653 5678999999999999999999988655 7788999999999999999
Q ss_pred chHHHHHHHHHhCCC
Q 004938 570 QDVGELRKSMKERGI 584 (722)
Q Consensus 570 ~~a~~~~~~m~~~g~ 584 (722)
++-.+++...+++.-
T Consensus 1150 edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1150 EDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999887777653
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=0.0001 Score=87.69 Aligned_cols=233 Identities=10% Similarity=-0.008 Sum_probs=142.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCC---CC--ChhhHHHHHHHHHccCCchHHHHHHHHHHHc----CCCC---Ch
Q 004938 318 WSAMISGYAENNHPQEALKLFNEMQVCGM---KP--DKVTMLSVISACAHLGVLDQAQRIHLYIDKN----AFGG---DL 385 (722)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~---~~ 385 (722)
++.+...+...|++++|...+++.....- .+ ...++..+...+...|+++.|...+...... +... ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 45555666777888888887777653211 11 1223444555667788888888877766542 2111 12
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC------C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHH--
Q 004938 386 RVNNAIIDMYAKCGSLESAREVFERMRR------R--NVISWTSMINAFAIHGDARNALIFFNKMKDESID-PNGVTF-- 454 (722)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-- 454 (722)
..+..+...+...|++++|...+.+... + ....+..+...+...|+.++|.+.+++.....-. .....+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 2344555667777888888888776532 1 1234444556677889999999888887542111 111111
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcc----hHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-H
Q 004938 455 ---IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE----HYGCMVDLFGRANLLREALELVETM-------PFAPN-V 519 (722)
Q Consensus 455 ---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~ 519 (722)
...+..+...|+.+.|.+++...... ...... .+..+..++...|+.++|...+++. +..++ .
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKP--EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCC--CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 11123345578888988887765431 111111 1345667788889999998888776 22222 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
.+...+..++...|+.++|...+++++++....
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 356666777889999999999999999876543
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=6e-06 Score=77.66 Aligned_cols=407 Identities=13% Similarity=0.073 Sum_probs=212.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHHc
Q 004938 155 QTGLVGMYGACGKILDARLMFDKMSYRDI---VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSK-ILSACSR 230 (722)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~ 230 (722)
+++.+.-+.+-.++++|++++..-.+++. ...+.|..+|-...++..|-+.++++-.. .|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 45566666677788888888776655444 34667777888888888888888887653 454444432 1233445
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH--HHhcCChHHHHHHHHhccc-CCchHHHHHHHHHHhcCCHHHHHHHH
Q 004938 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITM--YANCGCMDMAKGLFDKVLL-KNLVVSTAMVSGYSRAGQVEDARLIF 307 (722)
Q Consensus 231 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~f 307 (722)
.+.+..|..+...|.+. ++...-..-+.+ ....+++..++.+.++.+. .+..+.+...-...+.|+.+.|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 56666777776665442 121111111122 2234566666666666653 34444444444455666666666666
Q ss_pred hccCCC----CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHH--HHHHHHccCCchHHHHHHHHHHHcCC
Q 004938 308 DQMVEK----DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLS--VISACAHLGVLDQAQRIHLYIDKNAF 381 (722)
Q Consensus 308 ~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~a~~i~~~~~~~~~ 381 (722)
+...+- ...+||.-+ +..+.|+++.|+++..++++.|++-.+. +++ ...+- ....+..-..++...
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegi-DvrsvgNt~~lh~Sa----- 239 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGI-DVRSVGNTLVLHQSA----- 239 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccC-chhcccchHHHHHHH-----
Confidence 655332 234454333 3334556666666666666666542111 000 00000 000000000011100
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004938 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRR-----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456 (722)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 456 (722)
-+..+|.-...+.+.|+.+.|.+.+-.|+. -|++|...+.-.- ..+++.+..+-+.-+..... -...||..
T Consensus 240 --l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 240 --LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred --HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 012233334456788999999999999984 4677766554322 24555555555555555322 23579999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH-HhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcC
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF-GRANLLREALELVETMPFAPN--VVIWGSLMAACRVHG 533 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g 533 (722)
++-.|++..-++-|-.++.+-....-.-.+...|+ |++++ ...-..++|++-++.+.-.-. ......-+.--+..+
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~ 394 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNR 394 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999988888764322000001222333 33333 334556666665554410000 000000011111111
Q ss_pred C---HHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 534 E---IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 534 ~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+ +..+.+-|++.+++.- .+....+++|++..++.-++++|..-.+.
T Consensus 395 dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 395 DDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 1 1223334444444321 24567788899999999999999876653
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.85 E-value=9.8e-07 Score=80.31 Aligned_cols=192 Identities=15% Similarity=0.040 Sum_probs=105.2
Q ss_pred HHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHH
Q 004938 359 ACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNA 435 (722)
Q Consensus 359 ~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 435 (722)
.|...|+...|+.-++.+++.. +.+..++..+...|.+.|+.+.|.+-|++... .+-...|....-+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3444444444444444444432 22334444555555555555555555554432 3344555555555666666666
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 004938 436 LIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM- 513 (722)
Q Consensus 436 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 513 (722)
...|++......-|. ..||..+.-+..+.|+.+.|..+|++..+ ..+........+.......|++..|..+++..
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 666666555322222 23555555555666666666666666654 23333455556666666666666666666655
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 514 -PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 514 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
...++..+.-..+..-...||-+.+-+.-.++....|...
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 2335555555555556667777777666666666666654
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=6.5e-05 Score=77.68 Aligned_cols=212 Identities=11% Similarity=0.023 Sum_probs=128.5
Q ss_pred HHhccCCCCCCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHH--
Q 004938 54 LTSFSLPTTTPSSLYYALSIFSQIP---APPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA-- 128 (722)
Q Consensus 54 i~~~~~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-- 128 (722)
++.+.. . |.+++|.+..+.+- +.+...+..-+-++.+.+++++|+.+.+.-... ..+.+-+ +=++|+
T Consensus 19 ln~~~~--~--~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGK--N--GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEY 90 (652)
T ss_pred HHHhcc--c--hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHH
Confidence 355555 5 89999988776643 235556667777888999999999666542210 1111111 345555
Q ss_pred hcCChHHHHHHHHHHHHhCCCCch-hhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHH
Q 004938 129 RAEGLLEGMQVHGLGTKLGFGSDP-FVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFE 207 (722)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 207 (722)
+.+..++|...+. |..++. .+...-...+.+.|++++|..+++.+...+...+-..+.+-+..-- .+.. -+
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--a~l~-~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--AALQ-VQ 162 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--Hhhh-HH
Confidence 7899999998887 343333 3444455677799999999999999977666665554443221110 0111 11
Q ss_pred HHHHCCCCCCHhHHHHHHHH---HHccCChHHHHHHHHHHHHcCCC-------CCH-------hHHHHHHHHHHhcCChH
Q 004938 208 EMKMSNVEPDEMVLSKILSA---CSRAGNLSYGEAVHEFIIDNNVA-------LDA-------HLQSTLITMYANCGCMD 270 (722)
Q Consensus 208 ~m~~~g~~p~~~t~~~ll~~---~~~~g~~~~a~~~~~~~~~~g~~-------~~~-------~~~~~li~~~~~~g~~~ 270 (722)
.|......| ..||..+.+. +...|++..|+++++...+.+.+ .+. .+.--|.-.+-..|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 244444444 3466655553 35679999999999998443211 011 11223444566778888
Q ss_pred HHHHHHHhcccC
Q 004938 271 MAKGLFDKVLLK 282 (722)
Q Consensus 271 ~A~~~~~~~~~~ 282 (722)
+|..++...+..
T Consensus 242 ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 242 EASSIYVDIIKR 253 (652)
T ss_pred HHHHHHHHHHHh
Confidence 888887777544
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.82 E-value=1.1e-05 Score=87.90 Aligned_cols=525 Identities=10% Similarity=-0.002 Sum_probs=271.3
Q ss_pred hHHHHHHHhccCCCCCCCChHHHHHHhccC---CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC-CCcccHHHH
Q 004938 48 LLLKLLLTSFSLPTTTPSSLYYALSIFSQI---PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLT-IDRFSFPPI 123 (722)
Q Consensus 48 ~~~~~li~~~~~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l 123 (722)
..+..|=..|.. . -+...|.+.|+.. ..-+..+|......|++...++.|+.+.-.--+.... .-...|..+
T Consensus 493 paf~~LG~iYrd--~--~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 493 PAFAFLGQIYRD--S--DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQR 568 (1238)
T ss_pred HHHHHHHHHHHH--H--HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhc
Confidence 456666666655 4 4666778877754 3445667888889999999999988883332221100 001112222
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHH---HHHHHHhCCChh
Q 004938 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSV---MIDGYFQNGLFD 200 (722)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~---li~~~~~~g~~~ 200 (722)
--.+...++...+..-++...+.. +.|...|..|..+|.++|++..|.++|++...-++.+|-. ....-+..|.+.
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHH
Confidence 333455667777777777777665 5578889999999999999999999998876655554322 122345678889
Q ss_pred HHHHHHHHHHHC------CCCCCHhHHHHHHHHHHccCChHH-------HHHHHHHHHHcCCCCCHhHHHHHHHHHH---
Q 004938 201 EVLNLFEEMKMS------NVEPDEMVLSKILSACSRAGNLSY-------GEAVHEFIIDNNVALDAHLQSTLITMYA--- 264 (722)
Q Consensus 201 ~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g~~~~-------a~~~~~~~~~~g~~~~~~~~~~li~~~~--- 264 (722)
+|+..+...... +..--..++..+...+...|-... +.+.+.-.+......+...|-.+-+++.
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~ 727 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFS 727 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH
Confidence 998888776432 111122333333333333333222 3333333333222222233322222211
Q ss_pred --------------------hcCCh---H---HHHHHHHhc--ccCCchHHHHHHHHHHh----c----CCHHHHHHHHh
Q 004938 265 --------------------NCGCM---D---MAKGLFDKV--LLKNLVVSTAMVSGYSR----A----GQVEDARLIFD 308 (722)
Q Consensus 265 --------------------~~g~~---~---~A~~~~~~~--~~~~~~~~~~li~~~~~----~----g~~~~A~~~f~ 308 (722)
+.+.. | -+.+.+-.- ...+..+|-.++..|.+ . .+...|...+.
T Consensus 728 q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K 807 (1238)
T KOG1127|consen 728 QEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK 807 (1238)
T ss_pred HhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 11111 0 000000000 00123344444443322 1 11223444444
Q ss_pred ccC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCCh
Q 004938 309 QMV---EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL 385 (722)
Q Consensus 309 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~ 385 (722)
... ..+...||.|.-. ...|.+.-|..-|-+-.... +-...+|..+.-.|....+++.|.+.+....... +.+.
T Consensus 808 kaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl 884 (1238)
T KOG1127|consen 808 KAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNL 884 (1238)
T ss_pred HHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhh
Confidence 332 2345556655444 33344444444444433321 2244455555555556667777777766665542 2233
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhc-----CC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------cCCC
Q 004938 386 RVNNAIIDMYAKCGSLESAREVFERM-----RR---RNVISWTSMINAFAIHGDARNALIFFNKMKD---------ESID 448 (722)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~g~~ 448 (722)
.-|-...-.....|+.-++..+|..- .+ ++..-|-.-..-...+|+.++-+..-+++.. .|.+
T Consensus 885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p 964 (1238)
T KOG1127|consen 885 VQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHP 964 (1238)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc
Confidence 33333333334456666666666541 11 3444444444444556665554444333221 1233
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHH----HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 004938 449 PNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC----MVDLFGRANLLREALELVETMPFAPNVVIWGS 524 (722)
Q Consensus 449 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 524 (722)
-+...|........+.+.++.|.+...+.+.-...+-+...|+. ....+...|.++.|..-+...+..-|..+-.+
T Consensus 965 ~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt 1044 (1238)
T KOG1127|consen 965 QLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGT 1044 (1238)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhh
Confidence 33456777777777777777777666655432122234444443 33445557777777766665544444444443
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH---HHHHHhhhCCCcchHHHHHHHHHh
Q 004938 525 LMAACRVHGEIELAEFAAKQLLQLDPDHDGALV---LLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 525 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
-+.. .-.++++++.+.|++++.+..++...-+ .++......+.-+.|...+-+...
T Consensus 1045 ~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1045 DLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 3333 4467899999999999987655444333 333334456666777665544443
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.3e-06 Score=85.30 Aligned_cols=214 Identities=17% Similarity=0.110 Sum_probs=95.5
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh----------HHHHHHH
Q 004938 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNV----------ISWTSMI 423 (722)
Q Consensus 354 ~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~li 423 (722)
..+.++..+..+++.+.+-+....... .+..-++....+|...|.+.+....-+...+..- .....+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 334445555556666666666665543 4445555566666666666555554444332111 1122233
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCC
Q 004938 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY-EHYGCMVDLFGRANL 502 (722)
Q Consensus 424 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~ 502 (722)
.+|.+.++++.|+..|.+....-..||..+ +....+++....+... -+.|.. .-...=..-+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 355556666677777666555433433211 1112222222222111 111111 000011333344445
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 503 LREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 503 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
+.+|...+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|..-+.++....+|++|.+.+.+..
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444444 2223 234444444444445555555555555555555444444444444444445555554444443
Q ss_pred h
Q 004938 581 E 581 (722)
Q Consensus 581 ~ 581 (722)
+
T Consensus 454 e 454 (539)
T KOG0548|consen 454 E 454 (539)
T ss_pred h
Confidence 3
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.77 E-value=1.3e-05 Score=76.93 Aligned_cols=289 Identities=14% Similarity=0.119 Sum_probs=169.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCCchHHHHHH---HHHHhcCCHHHHHHHHhccCCCCcchHHHHH---HHHHhcCCc
Q 004938 258 TLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV---SGYSRAGQVEDARLIFDQMVEKDLICWSAMI---SGYAENNHP 331 (722)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~ 331 (722)
-|...+...|++.+|+.-|...++-|+..|.++. ..|...|+-..|+.-|+++.+..+..+.+-| ..+.+.|++
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 3445555566666666666666666666555543 2455566666666666665444333333333 345666777
Q ss_pred hHHHHHHHHHHhCCCCCChh----------------hHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 004938 332 QEALKLFNEMQVCGMKPDKV----------------TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395 (722)
Q Consensus 332 ~~A~~~~~~m~~~g~~p~~~----------------t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 395 (722)
++|..-|+..++.. |+.. .....+..+...|+...++.....+++.. +-|...+..-..+|
T Consensus 123 e~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 123 EQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred HHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 77777777766542 2111 12222333445567777777777666642 44566666667777
Q ss_pred HhcCCHHHHHHHHHhc---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-H---HHH---------HH
Q 004938 396 AKCGSLESAREVFERM---RRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT-F---IGV---------LY 459 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~---~~l---------l~ 459 (722)
...|++..|+.-+... ...|....--+-..+...|+.+.++...++-++ +.||... | -.| +.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 7777777776554443 345566666666667777777777777777666 5676532 1 111 01
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPK-----YEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVH 532 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~ 532 (722)
.....+.+.++.+-.+...+. .|. ...+..+-..+...|++.+|+....+. .+.|| +.++.--..+|...
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 223345566666665555542 222 222334445556667777777776665 55565 55666666777777
Q ss_pred CCHHHHHHHHHHHHccCCCCCc
Q 004938 533 GEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 533 g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
..++.|+.-|+++.+.+|++..
T Consensus 355 E~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHHHHHHHHHHHHHhcCcccHH
Confidence 7777777777777777777653
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.76 E-value=1.1e-05 Score=87.81 Aligned_cols=421 Identities=13% Similarity=0.049 Sum_probs=232.3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHHH
Q 004938 153 FVQTGLVGMYGACGKILDARLMFDKMSY---RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPDEMVLSKILSAC 228 (722)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~ 228 (722)
..|..|...|....+...|.+.|+..-+ .|..++......|++...+++|..+.-..-+.. ...-...|...--.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 3466677777766677777777766543 345556777777777777777776632221110 000111122222234
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHH---HHHHHHhcCCHHHHHH
Q 004938 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTA---MVSGYSRAGQVEDARL 305 (722)
Q Consensus 229 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~ 305 (722)
...++...+..-++...+.. +.|...|..|..+|..+|.+..|.++|++...-++..+-. .....+..|+..+|..
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 55666666666666666654 3366677777777777777777777776664443332221 1222345566666666
Q ss_pred HHhccCCC---------C-cchHHHHHHHHHhcCCchHHHHHHHH-------HHhCC--------------------CCC
Q 004938 306 IFDQMVEK---------D-LICWSAMISGYAENNHPQEALKLFNE-------MQVCG--------------------MKP 348 (722)
Q Consensus 306 ~f~~~~~~---------~-~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~~g--------------------~~p 348 (722)
.+..+... + ..++-.+...+.-.|-..+|.+.|+. ..... +.|
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~ 731 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP 731 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence 55554211 0 11121122222222222222222221 11111 112
Q ss_pred C---hhhHHHHHHHHHccCCc---h---HHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cC----CHHHHHHHHHhc
Q 004938 349 D---KVTMLSVISACAHLGVL---D---QAQRIHLYIDKNAFGGDLRVNNAIIDMYAK----CG----SLESAREVFERM 411 (722)
Q Consensus 349 ~---~~t~~~ll~~~~~~g~~---~---~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~~ 411 (722)
| ......+..-.-..+.. | .|.+.+-. ...+..+...|..|+.-|.+ +| +...|...+...
T Consensus 732 ~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kka 809 (1238)
T KOG1127|consen 732 SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKA 809 (1238)
T ss_pred cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 2 11111111112222222 1 01111111 11112223344444333332 22 233566666654
Q ss_pred C---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcc
Q 004938 412 R---RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE 488 (722)
Q Consensus 412 ~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 488 (722)
. ..+...||+|.-. ...|++.-|...|-+-... .+-+..+|..+.-.|.+..+++.|...|..... -.|.+..
T Consensus 810 V~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~ 885 (1238)
T KOG1127|consen 810 VSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLV 885 (1238)
T ss_pred HHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhH
Confidence 4 3677888887665 5567777777777666553 233456788888888899999999999998864 4444556
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHccCCC
Q 004938 489 HYGCMVDLFGRANLLREALELVETM-------PFAPNVVIWGSLMAACRVHGEIELAEF----------AAKQLLQLDPD 551 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~----------~~~~~~~~~p~ 551 (722)
.|--..-.....|+.-++..+|..- +-.|+...|.........+|+.++-+. ..++.++..|+
T Consensus 886 ~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~ 965 (1238)
T KOG1127|consen 886 QWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQ 965 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcc
Confidence 6655555556788888888888652 345666677666666677777665544 34555667899
Q ss_pred CCchHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 552 HDGALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
...+|...+....+.+.+++|.+...+..
T Consensus 966 ~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 966 LCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888776653
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.76 E-value=5e-06 Score=88.83 Aligned_cols=126 Identities=17% Similarity=0.086 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
++..+...+.+.|++++|+++.+..+. .-|..++.|..-...|-+.|++++|.+.++.. ...+ |..+-+.....+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 344455566777888888888887775 23333677777777788888888888777776 3333 4444455556667
Q ss_pred HcCCHHHHHHHHHHHHccC--CCCC-------chHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 531 VHGEIELAEFAAKQLLQLD--PDHD-------GALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~--p~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
+.|++++|..++......+ |... -...-.+.+|.+.|++..|.+-+..+.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7888888888777765544 2110 012355777888888888777666554
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=0.00069 Score=72.68 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=74.7
Q ss_pred CCchhHHHHHHHh--ccCCCCCCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC-C--------
Q 004938 44 SQNSLLLKLLLTS--FSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNE-G-------- 112 (722)
Q Consensus 44 ~~~~~~~~~li~~--~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-------- 112 (722)
..|+.+..++++. |.. . |+.+.|.+-...+.... .|..|.+.+++..+++-|.-.+-.|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvt--i--G~MD~AfksI~~IkS~~--vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVT--I--GSMDAAFKSIQFIKSDS--VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEE--e--ccHHHHHHHHHHHhhhH--HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 6788888888873 444 5 99999988887776643 5899999999988888877766665421 1
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHh
Q 004938 113 LTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFD 176 (722)
Q Consensus 113 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 176 (722)
-.|+ .+=..+.-.....|.+++|+.+|.+-.+.. .|-..|-..|.+++|.++-+
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE 850 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAE 850 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHh
Confidence 1122 222222223346778888888887766532 23344555566666665544
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=1.9e-07 Score=92.81 Aligned_cols=145 Identities=15% Similarity=0.120 Sum_probs=87.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH----HhcCC
Q 004938 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF----GRANL 502 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~ 502 (722)
...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+ ...| .+...+..++ .-...
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchh
Confidence 3445566665555431 2334444455555666666666666666543 1222 2222232222 22235
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCc-chHHHHHHHH
Q 004938 503 LREALELVETM--PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW-QDVGELRKSM 579 (722)
Q Consensus 503 ~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m 579 (722)
+.+|..+|+++ ...+++.+.+.+..++...|++++|+.+++++++.+|+++.+..+++-+....|+. +.+.+.+.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 67777777777 34466777777777888888888888888888888888888888888888888888 5566777776
Q ss_pred Hh
Q 004938 580 KE 581 (722)
Q Consensus 580 ~~ 581 (722)
+.
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=8.5e-05 Score=79.30 Aligned_cols=412 Identities=14% Similarity=0.093 Sum_probs=235.6
Q ss_pred HHhccCCCCCcchHHHHHH--HHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHh---
Q 004938 72 SIFSQIPAPPSRVSNKFIR--AISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKL--- 146 (722)
Q Consensus 72 ~~f~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 146 (722)
+-|-.+..=|..+-.+|+. .|+..|+.+.|++-.+.+. +...|..+.+.|.+.++++-|+-.+..|...
T Consensus 716 rdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 716 RDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred HHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 3344445556666666665 4677899999988877655 3467889999999988888887777665432
Q ss_pred -----CCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHH
Q 004938 147 -----GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221 (722)
Q Consensus 147 -----g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 221 (722)
..+.+...-....-.-...|.+++|..++.+-.+ |..|=..|...|++++|+++-+.=..-.+ ..||
T Consensus 790 RAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Ty 861 (1416)
T KOG3617|consen 790 RALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTY 861 (1416)
T ss_pred HHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhH
Confidence 1111213333333344577999999999987654 44555677888999999998765432222 2455
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH----------HcCC---------CCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC
Q 004938 222 SKILSACSRAGNLSYGEAVHEFII----------DNNV---------ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282 (722)
Q Consensus 222 ~~ll~~~~~~g~~~~a~~~~~~~~----------~~g~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 282 (722)
..-..-+-..+|.+.|.+.|+..- +..+ ..|...|.--..-+-..|++|.|+.+|...
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A--- 938 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA--- 938 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh---
Confidence 555555556677887777765431 1110 113333333333344467777777776543
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 004938 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH 362 (722)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 362 (722)
.-|-+++...|-.|+.++|-++-++-. |..+...+...|-..|++.+|...|.+.+. |...|+.|-.
T Consensus 939 --~D~fs~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKE 1005 (1416)
T KOG3617|consen 939 --KDYFSMVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKE 1005 (1416)
T ss_pred --hhhhhheeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHh
Confidence 236666777777888888877776643 455666788888888999999888877653 3444444322
Q ss_pred cC---------------CchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------------
Q 004938 363 LG---------------VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-------------- 413 (722)
Q Consensus 363 ~g---------------~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------- 413 (722)
.+ +.-.|...|++ .|. -....+..|-|.|.+.+|+++--+-.+
T Consensus 1006 nd~~d~L~nlal~s~~~d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1006 NDMKDRLANLALMSGGSDLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred cCHHHHHHHHHhhcCchhHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 22 11122222221 111 112234456677776666654322211
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cch
Q 004938 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEH 489 (722)
Q Consensus 414 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~ 489 (722)
.|+...+.-.+-+..+.++++|..++-...+ |...+..|...+ +.-..++-+.|.-...-.|+ ...
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~v 1147 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQV 1147 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHH
Confidence 3445555555556667777777776655433 333444444332 22222222333211111122 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 004938 490 YGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 537 (722)
...+.+.+.++|.+.-|-+-|.+.+.+ ...+.++.+.||.++
T Consensus 1148 Leqvae~c~qQG~Yh~AtKKfTQAGdK------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1148 LEQVAELCLQQGAYHAATKKFTQAGDK------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHHhccchHHHHHHHhhhhhH------HHHHHHHHhcCCcce
Confidence 556667777888888887777776522 123445556666554
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.67 E-value=4.3e-05 Score=80.03 Aligned_cols=256 Identities=9% Similarity=0.005 Sum_probs=135.1
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHc----cCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 004938 324 GYAENNHPQEALKLFNEMQVCGMKPDK-VTMLSVISACAH----LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398 (722)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 398 (722)
.+...|++++|.+.+++..+. .|+. ..+.. ...+.. .+..+.+.+.+... ....+........+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHc
Confidence 445567777777777776654 2332 22221 111212 23334444333331 111112223333455566777
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHH
Q 004938 399 GSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESI-DPNG--VTFIGVLYACSHAGLVDEGRE 472 (722)
Q Consensus 399 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~ 472 (722)
|++++|.+.+++..+ .+...+..+...|...|++++|+..+++.....- .|+. ..|..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777776654 3455666677777777777777777777665321 1222 234456666777777777777
Q ss_pred HHHHhHhhcCCCCCcchH-H--HHHHHHHhcCC------HHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004938 473 IFASMTNEYNIPPKYEHY-G--CMVDLFGRANL------LREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAA 542 (722)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g~------~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 542 (722)
+++.+.......+..... + .+...+...|. ++++....... +.............++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 777764311111111111 1 22222233332 22222221111 11111122234555667788888888888
Q ss_pred HHHHccCCC---------CCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 543 KQLLQLDPD---------HDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 543 ~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
+.+....-. ........+.++...|++++|.+.+......+
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 877652211 23344567778889999999999998887654
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.66 E-value=7e-07 Score=88.74 Aligned_cols=226 Identities=15% Similarity=0.089 Sum_probs=143.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCC-CChhHHHHHHHHH
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG-GDLRVNNAIIDMY 395 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~~ 395 (722)
....+..++...|+++.++. +..... .|.......+...+....+-+.+..-+......... .+..+......+|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 34455677777777665443 332222 555555544444443323333333333322222222 2333333444567
Q ss_pred HhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004938 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH----AGLVDEGR 471 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~ 471 (722)
...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. ...+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHHH
Confidence 7789999998888765 5666777788889999999999999999987 34443 33344443332 34688999
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHcc
Q 004938 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEI-ELAEFAAKQLLQL 548 (722)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~ 548 (722)
.+|+++.. ..++++.+.+.+.-+....|++++|.+++.+. ...| +..++..++-.....|+. +.+.+...++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999877 45677888888999999999999999999886 4445 456677777777777777 7788899998889
Q ss_pred CCCCC
Q 004938 549 DPDHD 553 (722)
Q Consensus 549 ~p~~~ 553 (722)
.|+++
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 99875
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=0.0001 Score=75.49 Aligned_cols=246 Identities=14% Similarity=0.069 Sum_probs=155.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCC------hhHHHHH
Q 004938 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD------LRVNNAI 391 (722)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~------~~~~~~l 391 (722)
...+..+.-+..+++.|++-+....... -+..-++....++...|...+....-...++.|...- ......+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445555566666666776666665543 2333333444455555555555444444333321110 0111123
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHH
Q 004938 392 IDMYAKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVD 468 (722)
Q Consensus 392 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~ 468 (722)
..+|.+.++++.|...|++... ++... ..+....++++...+...- +.|+.. -...-.+.+.+.|++.
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHH
Confidence 4477788899999999988553 22211 2233445566655555444 445542 2223366788999999
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLL 546 (722)
Q Consensus 469 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 546 (722)
.|...|.++++ ..|.|...|+...-+|.+.|.+.+|++-.+.. ...|+. ..|.-=..++....+++.|.+.|++.+
T Consensus 376 ~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 376 EAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 45778899999999999999999999877766 556653 455555566667789999999999999
Q ss_pred ccCCCCCchHHHHHHHhhhCCCcchHHHHH
Q 004938 547 QLDPDHDGALVLLSNIYAKDKRWQDVGELR 576 (722)
Q Consensus 547 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 576 (722)
+.+|++......+...+......+...++.
T Consensus 454 e~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred hcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 999998877777776665433333333333
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.62 E-value=4.4e-05 Score=90.75 Aligned_cols=322 Identities=12% Similarity=0.031 Sum_probs=207.9
Q ss_pred HHHhcCChHHHHHHHHhccc----CCchHHHHHHHHHHhcCCHHHHHHHHhccCC----CC---c-----chHHHHHHHH
Q 004938 262 MYANCGCMDMAKGLFDKVLL----KNLVVSTAMVSGYSRAGQVEDARLIFDQMVE----KD---L-----ICWSAMISGY 325 (722)
Q Consensus 262 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~---~-----~~~~~li~~~ 325 (722)
.....|+++.+...++.+.. .+..........+...|++++|...++.... .+ . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 44556788887777776632 1233333444455677888888887765421 11 1 1112233456
Q ss_pred HhcCCchHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCCchHHHHHHHHHHHcCC---CC--ChhHHHHHHHHHH
Q 004938 326 AENNHPQEALKLFNEMQVCGMKPDK----VTMLSVISACAHLGVLDQAQRIHLYIDKNAF---GG--DLRVNNAIIDMYA 396 (722)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~---~~--~~~~~~~li~~~~ 396 (722)
...|++++|...+++....-...+. ...+.+...+...|+++.|...+.......- .+ .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6889999999999998763111121 2334455566789999999999888765311 11 1234456677888
Q ss_pred hcCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHH
Q 004938 397 KCGSLESAREVFERMRR-------R----NVISWTSMINAFAIHGDARNALIFFNKMKDE--SIDPN--GVTFIGVLYAC 461 (722)
Q Consensus 397 ~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~ 461 (722)
..|++++|...+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999998876542 1 1223445556677789999999999887652 11222 22444556677
Q ss_pred HhcCCHHHHHHHHHHhHhhcCCCCCcchH-----HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHH
Q 004938 462 SHAGLVDEGREIFASMTNEYNIPPKYEHY-----GCMVDLFGRANLLREALELVETMPF-A-PNV----VIWGSLMAACR 530 (722)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~ll~~~~ 530 (722)
...|+.++|.+.++.+............+ ......+...|+.++|...+..... . ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999998876421111111111 1122445568999999999877621 1 111 12445666788
Q ss_pred HcCCHHHHHHHHHHHHccCC------CCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 531 VHGEIELAEFAAKQLLQLDP------DHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
..|+.++|...++++++... .....+..++.+|...|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 89999999999999987531 222356788999999999999999999988654
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.62 E-value=2.8e-06 Score=83.05 Aligned_cols=180 Identities=14% Similarity=0.045 Sum_probs=117.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----H
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRR--RN-V---ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV----T 453 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 453 (722)
....+..+...+.+.|++++|...|+++.. |+ . ..|..+...|...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 445566677777778888888888877654 22 1 35666777777888888888888887763 44322 3
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 004938 454 FIGVLYACSHA--------GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSL 525 (722)
Q Consensus 454 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 525 (722)
+..+..++... |+.++|.+.|+.+... .+.+...+..+... +...... ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 44444445443 6677777777777653 22222222222111 0011100 0011245
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCC---chHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 526 MAACRVHGEIELAEFAAKQLLQLDPDHD---GALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 526 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...+...|++++|...++++++..|+++ ..+..++.+|...|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5668889999999999999999877654 68889999999999999999999988764
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.59 E-value=8.8e-05 Score=77.68 Aligned_cols=148 Identities=15% Similarity=0.101 Sum_probs=77.3
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 004938 192 GYFQNGLFDEVLNLFEEMKMSNVEPD-EMVLSKILSACS----RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266 (722)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~----~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 266 (722)
.+...|++++|.+.+++..+. .|+ ...+.. ...+. ..+....+.+.+.. .....+........+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHc
Confidence 345566777777777666554 232 222221 11111 12333344443333 1111122233344455566677
Q ss_pred CChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHHHHHhccCCC-----Cc--chHHHHHHHHHhcCCchHHHH
Q 004938 267 GCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK-----DL--ICWSAMISGYAENNHPQEALK 336 (722)
Q Consensus 267 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~ 336 (722)
|++++|...+++..+. +...+..+...|...|++++|...+++.... +. ..|..+...+...|++++|+.
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 7777777777666432 3345555666666666666666666655332 11 234456667777777777777
Q ss_pred HHHHHHh
Q 004938 337 LFNEMQV 343 (722)
Q Consensus 337 ~~~~m~~ 343 (722)
+|++...
T Consensus 208 ~~~~~~~ 214 (355)
T cd05804 208 IYDTHIA 214 (355)
T ss_pred HHHHHhc
Confidence 7777643
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.58 E-value=0.00093 Score=68.64 Aligned_cols=126 Identities=13% Similarity=0.108 Sum_probs=53.5
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hHHHHHHHHHHH
Q 004938 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGG-DLRVNNAIIDMYAKCGSLESAREVFERMRR--RN-VISWTSMINAFA 427 (722)
Q Consensus 352 t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~ 427 (722)
+|...++...+..-++.|+.+|..+.+.+..+ ++.++++++..|| .++.+-|.++|+.-.+ +| ..--+..++-+.
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLS 446 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 34444444444444445555555554444333 4444444444443 2344444444443221 12 222233333344
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004938 428 IHGDARNALIFFNKMKDESIDPNG--VTFIGVLYACSHAGLVDEGREIFASMT 478 (722)
Q Consensus 428 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~ 478 (722)
..|+-..|..+|++....++.|+. ..|..+|.-=+.-|++..+.++-+++.
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444444444444444444333332 234444444444444444444444433
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.57 E-value=0.00045 Score=66.74 Aligned_cols=306 Identities=11% Similarity=0.056 Sum_probs=168.9
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHH---HHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHHccC
Q 004938 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWSVMI---DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSK-ILSACSRAG 232 (722)
Q Consensus 157 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~g 232 (722)
.|...+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.=|....+ ++||-..-.. --..+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 3445555667777777777777776776666654 356666777777766666665 3565322110 011234556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 004938 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE 312 (722)
Q Consensus 233 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 312 (722)
.++.|..=|+.+++.....+ ....++.+.-..++-..+
T Consensus 121 ele~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~~l------------------------------------- 158 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHWVL------------------------------------- 158 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHHHH-------------------------------------
Confidence 66666666666555432110 011111111111111111
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHH
Q 004938 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392 (722)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li 392 (722)
-..+..+...|+...|+.....+++-. +.|...+..-..+|...|.+..|+.=+..+.+.. ..++...-.+-
T Consensus 159 ------~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis 230 (504)
T KOG0624|consen 159 ------VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKIS 230 (504)
T ss_pred ------HHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHH
Confidence 112233344555555555555555431 2344444444555555555555555554444432 22233333444
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CCh----HHHHHH---------HHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHH--
Q 004938 393 DMYAKCGSLESAREVFERMRR--RNV----ISWTSM---------INAFAIHGDARNALIFFNKMKDESIDPN--GVT-- 453 (722)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t-- 453 (722)
..+.+.|+.+.++....+..+ ||- ..|-.+ +......+++.++++..+...+. .|. .++
T Consensus 231 ~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~ 308 (504)
T KOG0624|consen 231 QLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYN 308 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeee
Confidence 555555666555555555543 211 111111 12234577888888888887774 444 233
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 004938 454 -FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN 518 (722)
Q Consensus 454 -~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 518 (722)
|..+-.++...|.+.+|++...++.. -.+.|+.++.--.++|.-...+++|+.-|+.. ...++
T Consensus 309 ~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 309 GFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred eeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 34444567788999999999998875 33445888988999999999999999999887 44443
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.57 E-value=1.2e-06 Score=77.80 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=93.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 004938 437 IFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF 515 (722)
Q Consensus 437 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 515 (722)
.+|++.++ +.|+. +.....++...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45555555 45654 44556677788888888888888775 34556777888888888888888888888887 44
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 516 AP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 516 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
.| +...|..+..++...|+.++|...+++++++.|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 55 56788888888888999999999999999999998888877776543
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.57 E-value=5.3e-06 Score=93.17 Aligned_cols=200 Identities=16% Similarity=0.136 Sum_probs=167.6
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004938 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRR--------RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT 453 (722)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 453 (722)
+.....|-..+......+++++|++++++... .-...|.++++.....|.-+...++|+++.+- .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44566777888888899999999999998764 12358999999888889888999999999873 223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN---VVIWGSLMAAC 529 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~ 529 (722)
|..|...|.+.+..++|.++++.|.++++ .....|...++.+.+..+-+.|.+++.++ ..-|. .......+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999999776 56788999999999999999999999887 33333 34455556667
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCc
Q 004938 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 585 (722)
.++|+.+++..+|+-.+.-.|.-...|..+++.-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999999999999999999999988765
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.57 E-value=3.5e-06 Score=79.05 Aligned_cols=146 Identities=13% Similarity=0.149 Sum_probs=107.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH
Q 004938 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503 (722)
Q Consensus 424 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 503 (722)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 456777777665443322211 11 012235666777777777766 4566778888888888899999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHH
Q 004938 504 REALELVETM-PFAP-NVVIWGSLMAAC-RVHGE--IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578 (722)
Q Consensus 504 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 578 (722)
++|...+++. ...| +...+..+..++ ...|+ .++|..+++++++.+|+++.++..++..+...|++++|...+++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988887 5556 466777777764 66676 58999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 004938 579 MKERG 583 (722)
Q Consensus 579 m~~~g 583 (722)
+.+..
T Consensus 170 aL~l~ 174 (198)
T PRK10370 170 VLDLN 174 (198)
T ss_pred HHhhC
Confidence 87754
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.1e-07 Score=59.93 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=26.8
Q ss_pred CCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCC
Q 004938 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMS 179 (722)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 179 (722)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 112
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=0.00021 Score=67.59 Aligned_cols=293 Identities=9% Similarity=0.014 Sum_probs=164.4
Q ss_pred CChHHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHH-HHHHHhcCChHHHHHHH
Q 004938 65 SSLYYALSIFSQIPA---PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI-LKAIARAEGLLEGMQVH 140 (722)
Q Consensus 65 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~ 140 (722)
.++++|.+++....+ ++....+.|-.+|-...++..|-+.|+++.... |...-|..- ...+-+.+.+..|.++.
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 567777776644322 244456666667777777777777777776543 333323221 23344566677777777
Q ss_pred HHHHHhCCCCchhhHHHHHH----HHHhCCCHHHHHHHHhcCC-CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 004938 141 GLGTKLGFGSDPFVQTGLVG----MYGACGKILDARLMFDKMS-YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVE 215 (722)
Q Consensus 141 ~~~~~~g~~~~~~~~~~li~----~~~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 215 (722)
..|... ....+..+. .....+++..++.+.++.+ +.+..+.+...-...+.|++++|++-|+...+-|--
T Consensus 102 ~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 102 FLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence 665431 122222211 1224567777777777777 355555555555566778888888888777654333
Q ss_pred CCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHH----HHHHHHHHhcCC-hHHHHHHHHhcccCCchHHHHH
Q 004938 216 PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQ----STLITMYANCGC-MDMAKGLFDKVLLKNLVVSTAM 290 (722)
Q Consensus 216 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~----~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~l 290 (722)
-....|+..+. ..+.++...|.+...+++.+|+...+..- +-.+++-. .|+ ...+..- =+..+|.-
T Consensus 177 qpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgNt~~lh~Sa-------l~eAfNLK 247 (459)
T KOG4340|consen 177 QPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGNTLVLHQSA-------LVEAFNLK 247 (459)
T ss_pred CchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccchHHHHHHH-------HHHHhhhh
Confidence 33456665543 34557777788877777777654222110 00000000 000 0000000 01123334
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC-----CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 004938 291 VSGYSRAGQVEDARLIFDQMVEK-----DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365 (722)
Q Consensus 291 i~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 365 (722)
...+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-++..+. -...||..++-.||+..-
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHH
Confidence 44457788888888888888765 666655443221 23455555555565655432 345688888888888888
Q ss_pred chHHHHHHHH
Q 004938 366 LDQAQRIHLY 375 (722)
Q Consensus 366 ~~~a~~i~~~ 375 (722)
++.|..++.+
T Consensus 326 f~lAADvLAE 335 (459)
T KOG4340|consen 326 FDLAADVLAE 335 (459)
T ss_pred HhHHHHHHhh
Confidence 8888777654
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=2.5e-05 Score=87.99 Aligned_cols=218 Identities=14% Similarity=0.148 Sum_probs=174.1
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC--------CchHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-cchHH
Q 004938 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK--------NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK-D-LICWS 319 (722)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~-~~~~~ 319 (722)
+.+...|-..|......++.++|++++++.+.. -...|.++++.-..-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 445677888888889999999999999888543 2357888888888888888889999998665 3 34688
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhc
Q 004938 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAF-GGDLRVNNAIIDMYAKC 398 (722)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~~~~~ 398 (722)
.|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++.++++.-. ...+......+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999875 334667788888899999999999999999887521 12456667778888899
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHH
Q 004938 399 GSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV--TFIGVLYACSHAGLVD 468 (722)
Q Consensus 399 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~ 468 (722)
|+.+.++.+|+.... +-...|+..|+.-.++|+.+.+..+|++....++.|-.. .|.-.|..=...|+-+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 999999999998875 356789999999999999999999999999988887653 4455554444444433
No 114
>PLN02789 farnesyltranstransferase
Probab=98.46 E-value=3.9e-05 Score=77.42 Aligned_cols=162 Identities=15% Similarity=0.086 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004938 401 LESAREVFERMRR---RNVISWTSMINAFAIHGDA--RNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 401 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
+++++..++++.+ ++..+|+...-.+.+.|+. ++++.+++++++. .|. ..+|.....++.+.|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555555544432 2333444433333333432 4455555555552 332 345555555555666666666666
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----CCHHHHHHH
Q 004938 475 ASMTNEYNIPPKYEHYGCMVDLFGRA---NL----LREALELVETM-PFAP-NVVIWGSLMAACRVH----GEIELAEFA 541 (722)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~ 541 (722)
+.+++ .-+.+...|+....++.+. |. .++++++..++ ...| |...|+.+...+... ++..+|...
T Consensus 166 ~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHH--HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 66655 2233444455444444332 22 24566666444 5555 457888888888773 345678888
Q ss_pred HHHHHccCCCCCchHHHHHHHhhhC
Q 004938 542 AKQLLQLDPDHDGALVLLSNIYAKD 566 (722)
Q Consensus 542 ~~~~~~~~p~~~~~~~~l~~~~~~~ 566 (722)
+.+++..+|+++.++..|+++|+..
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888888999988889999999863
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.43 E-value=1e-05 Score=75.59 Aligned_cols=134 Identities=17% Similarity=0.116 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 004938 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--PFAPNVVIWGSL 525 (722)
Q Consensus 448 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 525 (722)
.|+......+-.++...|+-+....+...... ..+.|......++....+.|++.+|...+++. +-+||...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44432225555666777777777777766543 34445556666788888888888888888887 344577888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 526 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
.-+|-+.|+++.|...|.+++++.|+++..+.+++..|.-.|++++|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 8888888888888888888888888888888888888888888888888888776654
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.41 E-value=3.6e-06 Score=74.63 Aligned_cols=107 Identities=11% Similarity=-0.063 Sum_probs=92.0
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004938 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549 (722)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 549 (722)
.+++...+ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...|+++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555443 3344 4566788899999999999999987 5556 57899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 550 PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 550 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
|+++.++..++.++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987754
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.38 E-value=5.7e-07 Score=56.72 Aligned_cols=33 Identities=33% Similarity=0.582 Sum_probs=23.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 004938 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412 (722)
Q Consensus 380 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 412 (722)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.37 E-value=3.7e-05 Score=72.14 Aligned_cols=155 Identities=11% Similarity=0.084 Sum_probs=113.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004938 392 IDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471 (722)
Q Consensus 392 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 471 (722)
+-.|.+.|+++....-.+.+..+. ..+...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777777654443332221 01123566778888888777742 344567888888899999999999
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 472 EIFASMTNEYNIPPKYEHYGCMVDLF-GRANL--LREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLL 546 (722)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 546 (722)
..|+...+ ..+.+...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998886 4455678888888864 67777 58999999988 5556 56788888889999999999999999999
Q ss_pred ccCCCCCchHH
Q 004938 547 QLDPDHDGALV 557 (722)
Q Consensus 547 ~~~p~~~~~~~ 557 (722)
++.|.+..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99987765443
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.37 E-value=5.2e-06 Score=72.21 Aligned_cols=118 Identities=11% Similarity=0.066 Sum_probs=96.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
.+..-.+...+...|++++|..+|+-. .+.| +..-|-.|...|...|++++|+..|.++..++|+++.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344445666677889999999999887 4556 46788999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHh
Q 004938 565 KDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 627 (722)
..|+.+.|.+.|+...... ..+|+..++.++.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999887642 135666677777766666554
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=2.5e-05 Score=86.76 Aligned_cols=191 Identities=13% Similarity=0.074 Sum_probs=140.6
Q ss_pred hhHHHHHH-HHHccCCchHH-HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHH
Q 004938 351 VTMLSVIS-ACAHLGVLDQA-QRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINA 425 (722)
Q Consensus 351 ~t~~~ll~-~~~~~g~~~~a-~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 425 (722)
.|...++. +.+..|..+++ .++++++.+ ++..........++..-...... .++..+-.|...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i 95 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARA 95 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHH
Confidence 34444444 45666766655 566666543 22322222222222222222111 457788888899
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHH
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 504 (722)
..+.|..++|+.+++...+ +.||.. ....+..++.+.+.+++|....+.... .-+.+......+..++.+.|+++
T Consensus 96 ~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchH
Confidence 9999999999999999998 688865 677788899999999999999999987 55666788889999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 505 EALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 505 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
+|.++|++. ...|+ ..+|..+..++...|+.++|...|+++++..-+-...|.
T Consensus 172 ~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 172 QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 999999998 33454 678999999999999999999999999987655444444
No 121
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.35 E-value=0.0066 Score=66.47 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccC
Q 004938 521 IWGSLMAACRVHGEI---ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 587 (722)
+-+.|+..|++.++. -+|+-+++..+..+|.|..+-..|+.+|.-.|-+..|.++++.+.-+.+..+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 446777888887764 4677788888889999988888999999999999999999999977666544
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.34 E-value=4.6e-05 Score=71.27 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=97.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh
Q 004938 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499 (722)
Q Consensus 420 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 499 (722)
..+-..+...|+.+....+..+.... ..-|.......+....+.|++.+|...|.+... .-++|.+.|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33444555566666666555554331 112222333456666667777777777776665 556667777777777777
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHH
Q 004938 500 ANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 500 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
.|++++|..-|.+. .+.| +....+.|.-.+.-.|+.+.|+.++..+....+.++..-.+|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777666665 4444 345666677677777777777777777777666666666777777777777777766543
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.34 E-value=3.1e-05 Score=75.67 Aligned_cols=181 Identities=17% Similarity=0.079 Sum_probs=129.0
Q ss_pred ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hH---HH
Q 004938 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD---LRVNNAIIDMYAKCGSLESAREVFERMRR--RN-VI---SW 419 (722)
Q Consensus 349 ~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~ 419 (722)
....+......+...|+++.|...++.+.+.. +.+ ...+..+...|.+.|++++|...|+++.+ |+ .. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45567777788899999999999999998753 222 24667788999999999999999999864 22 22 45
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchH
Q 004938 420 TSMINAFAIH--------GDARNALIFFNKMKDESIDPNGVT-FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHY 490 (722)
Q Consensus 420 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 490 (722)
..+..++... |+.++|++.|+++... .|+... ...+... .. .. .... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~------~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LR------NRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HH------HHHH---------HHH
Confidence 5566666654 7889999999999884 666532 2222111 00 00 0000 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 491 GCMVDLFGRANLLREALELVETM----PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 491 ~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
..+.+.|.+.|++++|...+++. +-.| ....|..+..++...|++++|...++.+....|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677889999999999999887 2233 3468889999999999999999998888766653
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=1.8e-05 Score=83.67 Aligned_cols=210 Identities=11% Similarity=0.015 Sum_probs=133.7
Q ss_pred HHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHH
Q 004938 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDAR 433 (722)
Q Consensus 356 ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 433 (722)
+...+.+.|-...|..+++.+. .+.-+|.+|...|+..+|..+..+..+ ||...|..+.+......-++
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 3344455555666666655443 234455666666666666655544433 45555555555555555556
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 434 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
+|.++++..... .-..+.......++++++.+.|+.-.+ -.+-...+|-.+.-+..+.++++.|.+.|...
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 666665543221 001111111225666777777766554 22233456667777777888888888888766
Q ss_pred -CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 514 -PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 514 -~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
...||. ..||.+-.+|.+.|+-.+|...++++++-+-++...+.+..-+..+.|.|++|.+.+.++.+..
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 567764 6889988889888888899999998888887777777777777788899999998888886543
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=0.00016 Score=73.58 Aligned_cols=119 Identities=21% Similarity=0.166 Sum_probs=84.2
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 537 (722)
.....|..++|+..++.+.+ ..|.|+.......+.+.+.|+.++|.+.++++ ...|+ ...+-.+..++.+.|+.++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 44556777777777777765 44555666666777777777777777777776 45565 4566677777777777777
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
|+..++.....+|+++..|..|+.+|...|+..++...+.++.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 7777777777777777777777777777777766666665554
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.29 E-value=9.5e-05 Score=82.29 Aligned_cols=191 Identities=8% Similarity=0.062 Sum_probs=140.8
Q ss_pred hHHHHHHHHHhcCCchHHH-HHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHH--cCCCCChhHHHHHHH
Q 004938 317 CWSAMISGYAENNHPQEAL-KLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDK--NAFGGDLRVNNAIID 393 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~--~~~~~~~~~~~~li~ 393 (722)
..+.+=.+...-|..++|- ++..+..+ ++ .+.+.+..+..-+-++.. ..++.+...+-.|..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~ 94 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VL---ERHAAVHKPAAALPELLDYVRRYPHTELFQVLVAR 94 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HH---HHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHH
Confidence 3444445566667777764 34443332 22 233444333333333322 245677888999999
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHH
Q 004938 394 MYAKCGSLESAREVFERMRR--R-NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT-FIGVLYACSHAGLVDE 469 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~ 469 (722)
.....|++++|..+++...+ | +...+..+...+.+.+++++|+..+++... ..|+..+ ...+..++.+.|.+++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHH
Confidence 99999999999999999875 4 456788889999999999999999999998 4787765 5566678889999999
Q ss_pred HHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 004938 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--PFAPNVVIWGSLM 526 (722)
Q Consensus 470 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 526 (722)
|..+|+++.. ..+.+...+..+...+...|+.++|...|++. ...|....|+.++
T Consensus 173 A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 173 ADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 9999999997 44455788999999999999999999999988 3445555555444
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=0.00021 Score=80.28 Aligned_cols=148 Identities=14% Similarity=0.181 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004938 387 VNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463 (722)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 463 (722)
.+-.|..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|++++.+.+.. +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444455555555555555555555543 3444555555555555 555555555554432 333
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAK 543 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 543 (722)
..++.++.++|..+.. ..+.+...+-.+...... ..++.--..++.-+-.-|...++++++..+++
T Consensus 182 ~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~------------~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLG------------HREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHh------------hhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3445555555555543 222222222222111111 11111223344445555666777777777777
Q ss_pred HHHccCCCCCchHHHHHHHhh
Q 004938 544 QLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 544 ~~~~~~p~~~~~~~~l~~~~~ 564 (722)
.+++.+|.|..+...++..|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 777777777666666666664
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=3.3e-05 Score=81.79 Aligned_cols=189 Identities=17% Similarity=0.167 Sum_probs=159.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004938 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459 (722)
Q Consensus 380 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 459 (722)
+++|--..-..+.+.+.++|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555556677889999999999999999986 4678889999999999999999988887 4889999999999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 537 (722)
......-+++|.++++....+ .-..+.....+.++++++.+.++.- .+.| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 988888999999999877653 1112222234579999999999865 5555 45789888888889999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
|.+.|.....++|++...+++++.+|.+.|+..+|...+++..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999988766
No 129
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=5.6e-05 Score=78.08 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=86.8
Q ss_pred HHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 434 NALIFFNKMK-DESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512 (722)
Q Consensus 434 ~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 512 (722)
...++|-++. ..+.++|......|.-.|.-.|.+++|...|+.+.. --|.|...||-|...++...+.+||+..|++
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 3444444443 344345555666666667778889999999988876 3344678889999999988999999999888
Q ss_pred C-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 513 M-PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 513 ~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
. .++|.- .++..|.-.|...|.+++|...|-.++.+.+.
T Consensus 490 ALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 490 ALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 7 778874 57777888888999999999988888877554
No 130
>PLN02789 farnesyltranstransferase
Probab=98.22 E-value=0.00079 Score=68.01 Aligned_cols=209 Identities=12% Similarity=0.109 Sum_probs=141.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccC-CchHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKV-TMLSVISACAHLG-VLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 394 (722)
++..+-..+...++.++|+.+..++++. .|+.. .++.--.++...| +++++...+..+++.+ +.+..+|+.-.-.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3444555566677888888888888874 45444 3444444555566 5788888888888764 4455566655545
Q ss_pred HHhcCCH--HHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CC
Q 004938 395 YAKCGSL--ESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA---GL 466 (722)
Q Consensus 395 ~~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~ 466 (722)
+.+.|+. +++..+++.+.+ +|..+|+...-.+...|+++++++.++++++.... |...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 5566653 667777777764 67788998888888899999999999999986422 344555555555444 22
Q ss_pred ----HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 004938 467 ----VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA----NLLREALELVETM-PFAP-NVVIWGSLMAACRV 531 (722)
Q Consensus 467 ----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 531 (722)
.++..++...++. ..|-+...|+-+..+|... +...+|.+++.+. ...| +......|+..+..
T Consensus 195 ~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 3467777767765 4566778888888888773 4456688887775 4344 45677777777764
No 131
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.21 E-value=0.011 Score=61.09 Aligned_cols=210 Identities=12% Similarity=0.100 Sum_probs=144.4
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHH
Q 004938 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG---SLESAREVFERMRR----RNVISWTSMINAFAIHGDARNALIFF 439 (722)
Q Consensus 367 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~ 439 (722)
+++..+++..+..-...+..+|.++.+.--..- ..+.....++++.. .-..+|-..++.-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455566666555433334455554443222111 24444555555442 33457888888888888899999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CC
Q 004938 440 NKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM---PF 515 (722)
Q Consensus 440 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~ 515 (722)
.+..+.+..+ +.....+++.-++ .++.+-|.++|+.-.+++|. +...-...++-+...++-..|..+|++. .+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999988888 4556666666544 68889999999998885554 4455578889999999999999999998 24
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC----chHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 516 APN--VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD----GALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 516 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
.|| ..+|..++.--..-|++..+.++-++....-|.+. ..-..+.+-|.-.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 454 47999999999999999999999988887666221 12335556666666666555444444
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.20 E-value=0.018 Score=63.21 Aligned_cols=500 Identities=13% Similarity=0.044 Sum_probs=254.4
Q ss_pred CChHHHHHHhccCC--CCCcchHHHHHHHH--HhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHH
Q 004938 65 SSLYYALSIFSQIP--APPSRVSNKFIRAI--SWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVH 140 (722)
Q Consensus 65 g~~~~A~~~f~~~~--~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 140 (722)
+++..|....+.+- .||. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|...+..+++..+|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 56666666555442 2443 455555655 4788999999888877655544 7788888888888899999999999
Q ss_pred HHHHHhCCCCchhhHHHHHHHHHhCCCHH----HHHHHHhcCCCCCcccHHHHHHHHHhC-CCh---------hHHHHHH
Q 004938 141 GLGTKLGFGSDPFVQTGLVGMYGACGKIL----DARLMFDKMSYRDIVPWSVMIDGYFQN-GLF---------DEVLNLF 206 (722)
Q Consensus 141 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~---------~~A~~~~ 206 (722)
++.... .|+......+..+|.+-+++. .|.+++...+.+--.-|+. ++.+.+. ... .-|.+.+
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHHH
Confidence 988775 456777778888888877654 4677777666544444554 3333332 222 2344555
Q ss_pred HHHHHCC-CCCCHhHHHHHHHHHHccCChHHHHHHHH-HHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCc
Q 004938 207 EEMKMSN-VEPDEMVLSKILSACSRAGNLSYGEAVHE-FIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNL 284 (722)
Q Consensus 207 ~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 284 (722)
+.+.+.+ ---+..-...-+......|..++|.+++. .....-...+...-+--++.+.+.+++.+-.++-.+...++.
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 5565543 11111122222334456788899988883 333333444566667788899999999888887777765533
Q ss_pred hHHHHHHHHH----------------HhcCCHHHHHHHHhccCCC-CcchHHHHHHH---HHhcCCchHHHHHHHHHHhC
Q 004938 285 VVSTAMVSGY----------------SRAGQVEDARLIFDQMVEK-DLICWSAMISG---YAENNHPQEALKLFNEMQVC 344 (722)
Q Consensus 285 ~~~~~li~~~----------------~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~ 344 (722)
.-|...+..+ ...+..+...+..++.... .-..|-+-+.. +-.-|+.++++..|-+- -
T Consensus 258 Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--f 335 (932)
T KOG2053|consen 258 DDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--F 335 (932)
T ss_pred cchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--h
Confidence 3254444432 2222233322222222111 11223232333 33447777765444322 2
Q ss_pred CCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChh-------HHHHHHHHHHhcCC-----HHHHHHHH----
Q 004938 345 GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR-------VNNAIIDMYAKCGS-----LESAREVF---- 408 (722)
Q Consensus 345 g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~-------~~~~li~~~~~~g~-----~~~A~~~~---- 408 (722)
|-+|- |..=+..|...=..++-..+........ ++.. .+...+..-.-.|. -+.-..++
T Consensus 336 g~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~ 410 (932)
T KOG2053|consen 336 GDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLK 410 (932)
T ss_pred CCCcH---hHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence 22221 1111111111111111111221111110 0000 00111111111111 01111111
Q ss_pred HhcCC---------C------C---hHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004938 409 ERMRR---------R------N---VISWTSMINAFAIHGDAR---NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467 (722)
Q Consensus 409 ~~~~~---------~------~---~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 467 (722)
-.... | + ..+-+.|++.+.+.++.. +|+-+++.-... -+-|..+-..++..|+-.|-.
T Consensus 411 ~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~ 489 (932)
T KOG2053|consen 411 LTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAF 489 (932)
T ss_pred HHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCC
Confidence 11111 1 1 124567788888887755 455555554442 123444566777888888988
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF-APNV-VIWGSLMAACRVHGEIELAEFAAKQ 544 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 544 (722)
..|.+.|..+--+ .+..|..-|- +...+.-.|++..+...++.. .+ ..+. .+-. ++..-.++|.+.+-.+...-
T Consensus 490 p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-yI~~AYr~g~ySkI~em~~f 566 (932)
T KOG2053|consen 490 PDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPE-YIALAYRRGAYSKIPEMLAF 566 (932)
T ss_pred hhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHcCchhhhHHHHHH
Confidence 8888888887654 4555443322 223444566666666665543 10 1111 1111 22233456666655554322
Q ss_pred HHccCCCC----CchHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 545 LLQLDPDH----DGALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 545 ~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
=-.+.-.. ..+-..+.......++.++-.+.+..|+
T Consensus 567 r~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 567 RDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 11121111 1122355666677788888777777776
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.15 E-value=1.9e-05 Score=69.48 Aligned_cols=95 Identities=21% Similarity=0.170 Sum_probs=68.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
.....++..+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44555666666777777777777665 3334 456677777777777888888888888888888877777788888888
Q ss_pred CCCcchHHHHHHHHHhC
Q 004938 566 DKRWQDVGELRKSMKER 582 (722)
Q Consensus 566 ~g~~~~a~~~~~~m~~~ 582 (722)
.|++++|.+.++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888887777664
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=4.6e-06 Score=53.46 Aligned_cols=35 Identities=40% Similarity=0.725 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 004938 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDE 218 (722)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 218 (722)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=0.00011 Score=75.61 Aligned_cols=123 Identities=17% Similarity=0.087 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
...+++..+...+.+++|.++|+++.+. +++....|+..+...++-.+|.+++.+. ...| +...+.....-|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~-----~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER-----DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc-----CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455667777888999999999998873 2345667888888888888999998887 3334 5667776777788
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
..++++.|+.+++++.++.|++..+|..|+.+|...|++++|.-.++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999988774
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.06 E-value=0.00057 Score=69.67 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=108.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC
Q 004938 423 INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL-YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501 (722)
Q Consensus 423 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 501 (722)
.-.+...|++++|+..++.++.. .||...|..+. ..+...++.++|.+.++.+.. ..|......-.+.++|.+.|
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcC
Confidence 33455678889999999998874 67766655544 577888999999999998886 23333566777888999999
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 502 LLREALELVETM--PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 502 ~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
+..+|..++++. ..+.|+..|..|..+|...|+..++.... +..|.-.|+|++|....+..
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHHH
Confidence 999999998887 33346789999999999999888776654 44577889999999999888
Q ss_pred HhCC
Q 004938 580 KERG 583 (722)
Q Consensus 580 ~~~g 583 (722)
+++.
T Consensus 452 ~~~~ 455 (484)
T COG4783 452 SQQV 455 (484)
T ss_pred HHhc
Confidence 8764
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=6.3e-06 Score=52.80 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=32.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc
Q 004938 83 RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDR 117 (722)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 117 (722)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.00054 Score=63.68 Aligned_cols=182 Identities=13% Similarity=0.202 Sum_probs=80.4
Q ss_pred CCchHHHHHHHHHHH---cC-CCCChh-HHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh---HHHHHHHHHHHHcCCHH
Q 004938 364 GVLDQAQRIHLYIDK---NA-FGGDLR-VNNAIIDMYAKCGSLESAREVFERMRR--RNV---ISWTSMINAFAIHGDAR 433 (722)
Q Consensus 364 g~~~~a~~i~~~~~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~li~~~~~~g~~~ 433 (722)
.+.++..+++..++. .| ..++.. +|..++-+...+|+.+.|...++.+.. |+. .-..+| -+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchh
Confidence 345555555555542 22 333322 222333344445555555555555432 111 111111 122345555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 434 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
+|+++++.+++.. +.|.+++..-+...-..|.--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 5555555555542 22334444444444444444455555544444 34445555555555555555555555555554
Q ss_pred -CCCC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCC
Q 004938 514 -PFAP-NVVIWGSLMAACRVHG---EIELAEFAAKQLLQLDP 550 (722)
Q Consensus 514 -~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p 550 (722)
-+.| +...+..+...+...| +++.+...|.+++++.|
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 2223 2333333433332222 44445555555555555
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0038 Score=58.65 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cC
Q 004938 390 AIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH----AG 465 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g 465 (722)
.-...|++.|++++|.+.......-..... =...+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGENLEAAAL--NVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccch
Confidence 334456667777777776666322222222 223344555666667767766651 234455545444432 23
Q ss_pred CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 466 LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
.+.+|.-+|++|.. ..+|+..+.+.+.-+....|++++|..++++.
T Consensus 188 k~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 188 KIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred hhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 34555555555544 23344444444444444444444444444443
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.98 E-value=0.00017 Score=63.44 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=88.1
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 004938 438 FFNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF 515 (722)
Q Consensus 438 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 515 (722)
.|++... ..|+. .....+...+...|++++|.+.|+.+.. ..+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455554 45544 3455666777888899999999888876 34556778888888898999999999888877 44
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch
Q 004938 516 AP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 516 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 555 (722)
.| +...|..+...+...|+.++|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 45 46777778888999999999999999999999988653
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.98 E-value=0.00022 Score=73.44 Aligned_cols=125 Identities=13% Similarity=0.187 Sum_probs=97.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH
Q 004938 389 NAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLV 467 (722)
Q Consensus 389 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~ 467 (722)
.+|+..+...++++.|.++|+++.+.++..+..++..+...++..+|++++++.+.. .| +...+..-...|...+++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCH
Confidence 455666667788999999999988877777777888888888888999999888864 44 344455555667888899
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP 517 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 517 (722)
+.|..+.+++.+ -.|.+..+|..|+..|.+.|++++|+..++.+|.-|
T Consensus 251 ~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 251 ELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999998886 445566788999999999999999999888887544
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.98 E-value=0.0019 Score=72.80 Aligned_cols=23 Identities=13% Similarity=-0.036 Sum_probs=12.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHh
Q 004938 457 VLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
+-..|....+++++..+++.+.+
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHh
Confidence 33445555556666666666554
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.94 E-value=1.5e-05 Score=50.62 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=29.1
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 004938 183 IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216 (722)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 216 (722)
+.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888889998888888877
No 144
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=8.6e-05 Score=70.85 Aligned_cols=104 Identities=20% Similarity=0.177 Sum_probs=85.4
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNV-VIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~ 537 (722)
-..+.+++++|+..|..+++ -.|.|...|..-..+|.+.|.++.|.+-.+.. .+.|.. .+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 35677888888888888886 45567777888888999999999998888776 677764 699999999999999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
|++.|+++++++|++..+...|..+-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 9999999999999998666666544333
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=1.7e-05 Score=50.37 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=30.3
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 004938 82 SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI 115 (722)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 115 (722)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999998887
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0007 Score=62.93 Aligned_cols=183 Identities=14% Similarity=0.139 Sum_probs=143.1
Q ss_pred cCCHHHHHHHHHhcCC--------CCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCH
Q 004938 398 CGSLESAREVFERMRR--------RNV-ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV-LYACSHAGLV 467 (722)
Q Consensus 398 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~ 467 (722)
..+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+ ..-+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4678899998888753 233 24555566677889999999999999886 3 665432222 2234567999
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--PFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 545 (722)
++|.++++.+.+ ..|.|..+|---+.+.-..|+--+|++-+.+. .+..|...|.-|...|...|++++|...++++
T Consensus 103 ~~A~e~y~~lL~--ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLE--DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhc--cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999998 44667778877777777888888888877766 56679999999999999999999999999999
Q ss_pred HccCCCCCchHHHHHHHhhhCC---CcchHHHHHHHHHhCCC
Q 004938 546 LQLDPDHDGALVLLSNIYAKDK---RWQDVGELRKSMKERGI 584 (722)
Q Consensus 546 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g~ 584 (722)
+-..|-++-.+..+++++.-.| +.+-|.+++.+..+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999987766 55567777777766543
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.77 E-value=0.00021 Score=57.79 Aligned_cols=92 Identities=26% Similarity=0.239 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCC
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 567 (722)
+..+...+...|++++|...+++. ...|+ ...|..+...+...|++++|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455666777788888888888776 33443 4667777777888888888888888888888888778888888888888
Q ss_pred CcchHHHHHHHHHh
Q 004938 568 RWQDVGELRKSMKE 581 (722)
Q Consensus 568 ~~~~a~~~~~~m~~ 581 (722)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.75 E-value=6.8e-05 Score=56.91 Aligned_cols=64 Identities=22% Similarity=0.195 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCC-CcchHHHHHHHHHh
Q 004938 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK-RWQDVGELRKSMKE 581 (722)
Q Consensus 518 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 581 (722)
++.+|..+...+...|++++|+..|+++++++|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999 79999999988765
No 149
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0045 Score=58.18 Aligned_cols=120 Identities=15% Similarity=0.144 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCC-cchHHHHHHHHHh----cCCc
Q 004938 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD-LICWSAMISGYAE----NNHP 331 (722)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~----~g~~ 331 (722)
..-...|.+.|++++|++..... .+......-+..+.+..+++-|.+.+++|.+-| ..+.+.|..++.+ .+..
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhh
Confidence 33344556666666666665441 122222222333444555555555555554442 2233333333322 2345
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHc
Q 004938 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379 (722)
Q Consensus 332 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~ 379 (722)
.+|.-+|++|-+. ..|+..+.+....++...|++++|..+++.++..
T Consensus 190 qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 190 QDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5555555555442 3455555555555555555555555555555443
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=4.5e-05 Score=47.18 Aligned_cols=31 Identities=35% Similarity=0.800 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 004938 184 VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNV 214 (722)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 214 (722)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.00035 Score=59.70 Aligned_cols=99 Identities=12% Similarity=0.084 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETM-PFAPN----VVIWGSLMA 527 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 527 (722)
+..+...+...|++++|...|..+...+.-.+ ....+..+...+.+.|++++|.+.++++ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444445555555555555555544211100 0123333444444555555555544443 11121 233444444
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 528 ACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 528 ~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
.+...|+.+.|...++++++..|++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCC
Confidence 4444444555555555544444444
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.70 E-value=0.00048 Score=58.81 Aligned_cols=95 Identities=16% Similarity=0.025 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---CchHHHHH
Q 004938 489 HYGCMVDLFGRANLLREALELVETM-PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH---DGALVLLS 560 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 560 (722)
.+..++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455666667777777777777666 22232 2345556666777777777777777777766664 34566677
Q ss_pred HHhhhCCCcchHHHHHHHHHhCC
Q 004938 561 NIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 561 ~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
.++.+.|++++|.+.++.+.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777777777777777776654
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.70 E-value=0.0008 Score=59.86 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC--cchHH
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNG----VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK--YEHYG 491 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ 491 (722)
.|..++..+ ..++...+...++++... .|+. .....+...+...|++++|...|+.+... ...|. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 444455444 355666666666666553 2222 12233334555566666666666666552 11111 11222
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 492 CMVDLFGRANLLREALELVETMPFA-PNVVIWGSLMAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 545 (722)
.|...+...|++++|+..++..+.. .....+..+...+...|+.++|...|+++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 3444555555555555555544211 12334444444555555555555555543
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.70 E-value=3.6e-05 Score=61.13 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHH
Q 004938 500 ANLLREALELVETM-PFAP---NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575 (722)
Q Consensus 500 ~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 575 (722)
.|++++|+.+++++ ...| +...|..+...+.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666677666666 2222 345566677778888888888888877 666776666677778888888888888887
Q ss_pred HHH
Q 004938 576 RKS 578 (722)
Q Consensus 576 ~~~ 578 (722)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.70 E-value=0.0013 Score=58.58 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=59.3
Q ss_pred cCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETM-PFAPNV----VIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~ 537 (722)
.++...+...++.+.++++-.+ .....-.+...+...|++++|...|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5556666666666665322211 1222334455666666666666666665 112332 233344555566666666
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHH
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 578 (722)
|+..++.. .-.+-.+..+..++++|...|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22222334455666666666666666666654
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.67 E-value=0.0019 Score=69.92 Aligned_cols=140 Identities=11% Similarity=0.028 Sum_probs=78.7
Q ss_pred CCChHHHHHHHHHHHH--cC---CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHhH
Q 004938 413 RRNVISWTSMINAFAI--HG---DARNALIFFNKMKDESIDPNGV-TFIGVLYACSHA--------GLVDEGREIFASMT 478 (722)
Q Consensus 413 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 478 (722)
..|...|...+.+... .+ +...|+.+|++.++ ..|+.. .+..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3566777777776443 22 26688899999888 578753 343333222111 11223333333322
Q ss_pred hhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 479 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
.....+.+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 21112233455555555555566666666666666 45566666666666666666666666666666666666653
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=5.5e-05 Score=46.75 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=27.3
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 004938 83 RVSNKFIRAISWSHRPKHALKVFLKMLNEGL 113 (722)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 113 (722)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988774
No 158
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.59 E-value=0.11 Score=52.58 Aligned_cols=122 Identities=15% Similarity=0.185 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 467 (722)
.+..+.-+...|+...|.++..+..-|+-..|-..+.+|+..+++++-.++... +-.++.|..++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455667788899999998888889999999999999999999877765432 22347788889999999999
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAAC 529 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 529 (722)
.+|..+...+ .+..-+.+|.++|++.+|.+.--+.+ |...+..+..-|
T Consensus 254 ~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 254 KEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 9988887652 12567888999999999887765543 444444444333
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.57 E-value=0.00083 Score=69.54 Aligned_cols=102 Identities=14% Similarity=0.063 Sum_probs=68.4
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 537 (722)
.+...|++++|++.|+.+++ ..+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34455666666666666665 23334555666666667777777777777666 4445 45667777777888888888
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHh
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNIY 563 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~~ 563 (722)
|+..++++++++|+++.....+..+.
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88888888888888877666655543
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.57 E-value=0.00017 Score=53.86 Aligned_cols=58 Identities=28% Similarity=0.284 Sum_probs=43.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 525 LMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 525 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+...+...|++++|+..++++++.+|+++..+..++.++...|++++|...++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455677788888888888888888887778888888888888888888887777653
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.53 E-value=0.00042 Score=71.71 Aligned_cols=90 Identities=16% Similarity=0.101 Sum_probs=80.9
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcch
Q 004938 494 VDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571 (722)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 571 (722)
...+...|++++|+++++++ ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 45667889999999999998 5555 467888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 004938 572 VGELRKSMKERG 583 (722)
Q Consensus 572 a~~~~~~m~~~g 583 (722)
|...++...+..
T Consensus 89 A~~~~~~al~l~ 100 (356)
T PLN03088 89 AKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHhC
Confidence 999999987754
No 162
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.53 E-value=0.13 Score=52.12 Aligned_cols=137 Identities=14% Similarity=0.118 Sum_probs=99.1
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHH
Q 004938 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDES-IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492 (722)
Q Consensus 414 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 492 (722)
+-...|-..++.-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.-... ++.+...-..
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~k 471 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEK 471 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHH
Confidence 445677777777777777888888888888877 5566667777776444 57777888888876653 3333333355
Q ss_pred HHHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 493 MVDLFGRANLLREALELVETM--PFAPN--VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
.++-+.+.++-+.|..+|+.. .+..+ -.+|..++.--...|++..+..+-+++.++-|+..
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 667777888888888888855 22223 46788888888888998888888888888888763
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.51 E-value=0.001 Score=53.56 Aligned_cols=61 Identities=30% Similarity=0.278 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 550 (722)
+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++..|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 333444444444444444444443 1122 224555555666666666666666666666555
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.51 E-value=0.00071 Score=62.26 Aligned_cols=80 Identities=24% Similarity=0.128 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHh
Q 004938 489 HYGCMVDLFGRANLLREALELVETM-PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 563 (722)
.+..+...|.+.|++++|...+++. ...|+ ...|..+...+...|++++|...++++++..|++...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555555566666666666554 21221 356777777888888888888888888888888888888888888
Q ss_pred hhCCC
Q 004938 564 AKDKR 568 (722)
Q Consensus 564 ~~~g~ 568 (722)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 77776
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.50 E-value=0.00061 Score=62.43 Aligned_cols=93 Identities=15% Similarity=-0.094 Sum_probs=72.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHH
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSN 561 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 561 (722)
...|..++..+...|++++|+..+++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 345566666777778888888887776 23232 3578888889999999999999999999999998888888888
Q ss_pred Hhh-------hCCCcchHHHHHHHH
Q 004938 562 IYA-------KDKRWQDVGELRKSM 579 (722)
Q Consensus 562 ~~~-------~~g~~~~a~~~~~~m 579 (722)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 778888666666544
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.0028 Score=63.20 Aligned_cols=143 Identities=17% Similarity=0.258 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA-CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467888888888888999999999987532 2233445544444 33356777799999999984 5667788999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHh
Q 004938 496 LFGRANLLREALELVETM-PFAPNV----VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 563 (722)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+....+.+++.+.-|++. ....+.+-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHh
Confidence 999999999999999987 323333 5999999999999999999999999999988854 333344433
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.00034 Score=66.91 Aligned_cols=89 Identities=22% Similarity=0.189 Sum_probs=80.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcch
Q 004938 494 VDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571 (722)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 571 (722)
.+-+.+.+++++|+..|.++ .+.| |++.|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34567789999999999988 7777 567788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 004938 572 VGELRKSMKER 582 (722)
Q Consensus 572 a~~~~~~m~~~ 582 (722)
|.+.|++..+.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 99999887663
No 168
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0013 Score=63.37 Aligned_cols=106 Identities=18% Similarity=0.097 Sum_probs=89.5
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHccCCCCCchH
Q 004938 482 NIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRV---HGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 482 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
.-|-|.+.|-.|...|.+.|+++.|..-|.+. .+.| +...+..+..++.. .....++..++++++.++|.+..+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34668899999999999999999999999988 4444 56677777777543 2356789999999999999999999
Q ss_pred HHHHHHhhhCCCcchHHHHHHHHHhCCCccC
Q 004938 557 VLLSNIYAKDKRWQDVGELRKSMKERGILKE 587 (722)
Q Consensus 557 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 587 (722)
..|+..+...|++.+|...++.|.+.....+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999998765433
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.40 E-value=0.0041 Score=57.20 Aligned_cols=131 Identities=14% Similarity=0.112 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHH
Q 004938 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN--GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC 492 (722)
Q Consensus 415 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 492 (722)
....+..+...+...|++++|+..|++.......|+ ...+..+...+.+.|++++|...+.+..+ ..+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence 345667777777788888888888888776432222 24566777777788888888888877775 22334455566
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCC
Q 004938 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 568 (722)
+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ +..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544332221 112678889999999999986 4445555544443
No 170
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0033 Score=62.68 Aligned_cols=153 Identities=15% Similarity=0.080 Sum_probs=109.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHhHhhcCCCCCcch-------------
Q 004938 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY--ACSHAGLVDEGREIFASMTNEYNIPPKYEH------------- 489 (722)
Q Consensus 425 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------- 489 (722)
++.-.|++++|...--...+. .++. .+..+++ ++...++.+.|...|++..+ ..|+...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 455677888887766665552 2222 1222222 34456777888888877653 3333221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHh
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAP-----NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 563 (722)
+..-.+...+.|++.+|.+.+.+. .+.| ++..|.....+..+.|+.++|+.-.+.+++++|....+|..-++.+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 112234457889999999999887 5444 4556666667778899999999999999999999988999999999
Q ss_pred hhCCCcchHHHHHHHHHhCC
Q 004938 564 AKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 564 ~~~g~~~~a~~~~~~m~~~g 583 (722)
...++|++|.+-+++..+..
T Consensus 332 l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999887643
No 171
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.37 E-value=0.00081 Score=66.60 Aligned_cols=257 Identities=12% Similarity=0.022 Sum_probs=149.1
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCCchHHHHHHHHHHH----cCCC-CChhHHHHHHHH
Q 004938 324 GYAENNHPQEALKLFNEMQVCGMKPDK----VTMLSVISACAHLGVLDQAQRIHLYIDK----NAFG-GDLRVNNAIIDM 394 (722)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~i~~~~~~----~~~~-~~~~~~~~li~~ 394 (722)
-+++.|+....+.+|+..++.|. -|. ..|..+-++|.-.+++++|.++|..=+. .|-. ........|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 35667777777777777776652 232 2344455566666677777776543211 0100 011112223334
Q ss_pred HHhcCCHHHHHHHHHhcCC---------CChHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH-
Q 004938 395 YAKCGSLESAREVFERMRR---------RNVISWTSMINAFAIHGD--------------------ARNALIFFNKMKD- 444 (722)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~- 444 (722)
+--.|.+++|.-.-.+-.. -....+-.+...|...|+ .+.|.++|.+-.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445666665543322111 112233344445543332 2334444443221
Q ss_pred ---cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH---hHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC---
Q 004938 445 ---ESIDP-NGVTFIGVLYACSHAGLVDEGREIFAS---MTNEYNIPPK-YEHYGCMVDLFGRANLLREALELVETM--- 513 (722)
Q Consensus 445 ---~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~--- 513 (722)
.|-.. -...|..|.+.|.-.|+++.|+..++. +.+++|.... ...+..+.+.+.-.|+++.|.+.++..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11111 123466666666777899998877654 2334554432 456788888999999999999888764
Q ss_pred ----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----C--CCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 514 ----PFA-PNVVIWGSLMAACRVHGEIELAEFAAKQLLQL----D--PDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 514 ----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
+-+ -..-+..+|.+.|....++++|+..+.+-+.+ + .....+++.|+++|...|..+.|....+.-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 211 13446678888888888999999888776543 2 23445788999999999999999877766543
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.36 E-value=0.00066 Score=50.68 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=50.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 493 MVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 55564 57888899999999999999999999999999874
No 173
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.32 Score=52.17 Aligned_cols=321 Identities=16% Similarity=0.166 Sum_probs=141.7
Q ss_pred CCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHccCChHHHHHHH
Q 004938 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPD----EMVLSKILSACSRAGNLSYGEAVH 241 (722)
Q Consensus 166 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~ 241 (722)
|++++|.+++-+|.++|.. |..+.+.|++-.+.++++.= |-..| ...++.+-..++....++.|.+.+
T Consensus 748 g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777666542 45555566665555554321 11111 224444444555555555555544
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHH
Q 004938 242 EFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAM 321 (722)
Q Consensus 242 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l 321 (722)
..--. ....+.+|.+..++++-+.+-+.++ .+......+..++.+.|--++|.+.|-+-..+. +-
T Consensus 820 ~~~~~---------~e~~~ecly~le~f~~LE~la~~Lp-e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aA 884 (1189)
T KOG2041|consen 820 SYCGD---------TENQIECLYRLELFGELEVLARTLP-EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AA 884 (1189)
T ss_pred Hhccc---------hHhHHHHHHHHHhhhhHHHHHHhcC-cccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HH
Confidence 33211 1123444444444444433333222 233344455556666666666655554443332 23
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 004938 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401 (722)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 401 (722)
+..|...++|.+|.++-++.. -|...|+ +. ..|.++++.. + .---|..+-+.|+.
T Consensus 885 v~tCv~LnQW~~avelaq~~~----l~qv~tl---ia--------k~aaqll~~~---~-------~~eaIe~~Rka~~~ 939 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQ----LPQVQTL---IA--------KQAAQLLADA---N-------HMEAIEKDRKAGRH 939 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----chhHHHH---HH--------HHHHHHHhhc---c-------hHHHHHHhhhcccc
Confidence 344555566666665554432 1222221 11 0111111110 0 01234556677776
Q ss_pred HHHHHHHHhcCCCCh---HHHHHHHHHH----HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004938 402 ESAREVFERMRRRNV---ISWTSMINAF----AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 402 ~~A~~~~~~~~~~~~---~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
-+|-+++.+|.++.. ..|..+=..| .-..+..++++-.++....|...+... +...|...++-++.
T Consensus 940 ~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~ 1012 (1189)
T KOG2041|consen 940 LDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRIL 1012 (1189)
T ss_pred hhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHH
Confidence 666666666653111 1111111111 111223344444444444443322211 22334444444554
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM----PFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 545 (722)
+...+ | ....++-.|..--...|..+.|+..--.+ .+-|-..+|..|.-+-+....+...-++|-++
T Consensus 1013 ~n~Wr--g--AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1013 ENTWR--G--AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred Hhhhh--h--HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 43332 1 22345555666666778888887654443 23344455554444333333333333333333
No 174
>PRK15331 chaperone protein SicA; Provisional
Probab=97.34 E-value=0.0027 Score=55.81 Aligned_cols=88 Identities=13% Similarity=0.022 Sum_probs=75.1
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcch
Q 004938 494 VDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571 (722)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 571 (722)
.--+...|++++|..+|+-+ -..| +..-|..|...|...+++++|...|..+..++++++..+...+..|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33445688888888888776 2223 556788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 004938 572 VGELRKSMKE 581 (722)
Q Consensus 572 a~~~~~~m~~ 581 (722)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.33 E-value=0.0096 Score=54.47 Aligned_cols=110 Identities=15% Similarity=0.054 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPN--GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 493 (722)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|...++..... .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34666777777778888888888888776422221 236677777778888888888888777652 22233445555
Q ss_pred HHHHHhcC-------CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 494 VDLFGRAN-------LLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 494 i~~~~~~g-------~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
...|...| ++++|+. .+++|...++++++.+|++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCccc
Confidence 55554322 2222221 2456777888888888865
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.30 E-value=0.042 Score=57.98 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=87.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHH---------HHHHCCCCCCcccHHHHHHHHHhcCChHHHHHH--HHHHHHhCCCCchh
Q 004938 85 SNKFIRAISWSHRPKHALKVFL---------KMLNEGLTIDRFSFPPILKAIARAEGLLEGMQV--HGLGTKLGFGSDPF 153 (722)
Q Consensus 85 ~~~li~~~~~~g~~~~a~~~~~---------~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~ 153 (722)
+.+-+-.|...|.+.+|.++-. .+-.. ..+...++..=++|.+.+++.--+-+ ++.+.+.|-.|+..
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i 636 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL 636 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence 3344445666677666655311 11000 11334455666777777766544433 45667777777766
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCC
Q 004938 154 VQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGN 233 (722)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 233 (722)
. +...++-.|++.+|.++|.+ +|.-..|+++|..|+-- -...-+...|+
T Consensus 637 L---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE~~~~g~ 685 (1081)
T KOG1538|consen 637 L---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQEFLGSGD 685 (1081)
T ss_pred H---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHHHhhcCC
Confidence 5 44566778999999998864 67778888888877632 12334455566
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 004938 234 LSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGL 275 (722)
Q Consensus 234 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 275 (722)
.++-+.+...-.+- ..|+.--.+...++...|+.++|..+
T Consensus 686 ~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI 725 (1081)
T ss_pred hHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh
Confidence 55544444332211 11111112445666677777777666
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.26 E-value=0.084 Score=52.88 Aligned_cols=100 Identities=14% Similarity=0.245 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCC-----hh-hHHHHHHHHHccCCchHHHHHHHHHHHc--CCCCC--hh
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPD-----KV-TMLSVISACAHLGVLDQAQRIHLYIDKN--AFGGD--LR 386 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~-t~~~ll~~~~~~g~~~~a~~i~~~~~~~--~~~~~--~~ 386 (722)
.+..+...+.+.|++++|+++|++....-...+ .. .|...+-++...|++..|...++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 345566677778888888888877765432211 11 1222233444556666666666665543 22222 23
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHhcCCCCh
Q 004938 387 VNNAIIDMYAK--CGSLESAREVFERMRRRNV 416 (722)
Q Consensus 387 ~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~ 416 (722)
+...|++++-. ...+++|..-|+.+.+-|.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 34445555543 2345556666666555443
No 178
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.23 E-value=0.00076 Score=51.73 Aligned_cols=58 Identities=17% Similarity=0.089 Sum_probs=48.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 526 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
...+.+.+++++|..+++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3467788888888888888888888888888888888888888888888888887644
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.20 E-value=0.00035 Score=52.75 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=39.6
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...|++++|+..++++++.+|++......++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677788888888888888887777778888888888888888777766553
No 180
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.16 E-value=0.00021 Score=44.98 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=31.3
Q ss_pred HHHHHHccCCCCCchHHHHHHHhhhCCCcchHHH
Q 004938 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574 (722)
Q Consensus 541 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 574 (722)
+|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.11 E-value=0.22 Score=49.84 Aligned_cols=121 Identities=12% Similarity=0.261 Sum_probs=67.1
Q ss_pred HHHhc-CCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHH-HHHHH
Q 004938 394 MYAKC-GSLESAREVFERMRR-----RN----VISWTSMINAFAIHGDARNALIFFNKMKDESIDP-----NGV-TFIGV 457 (722)
Q Consensus 394 ~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-t~~~l 457 (722)
.|.+. |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-... +.. .|...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 555555555554432 11 1244556677888889999999998877643221 111 23344
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhc-CCCCC--cchHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 004938 458 LYACSHAGLVDEGREIFASMTNEY-NIPPK--YEHYGCMVDLFGR--ANLLREALELVETMP 514 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 514 (722)
+-++...|++..|.+.|+...... ++..+ ......|++++-. ...+++|..-|+.+.
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 446667788888888888876421 22222 2334455566543 456777777777773
No 182
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.09 E-value=0.38 Score=48.17 Aligned_cols=243 Identities=17% Similarity=0.158 Sum_probs=161.4
Q ss_pred HhcCCchHHHHHHHHHHhCCCCCChh--hHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 004938 326 AENNHPQEALKLFNEMQVCGMKPDKV--TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403 (722)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 403 (722)
.-.|+++.|.+-|+.|... |... -+..+.-.-.+.|+.+.|++.-+..-..- +.-...+.+.++..+..|+|+.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 3458888888888888752 2221 12233333457788888888777665542 2335677888999999999999
Q ss_pred HHHHHHhcC-----CCChH--HHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHH
Q 004938 404 AREVFERMR-----RRNVI--SWTSMINAFA---IHGDARNALIFFNKMKDESIDPNGVT-FIGVLYACSHAGLVDEGRE 472 (722)
Q Consensus 404 A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~ 472 (722)
|+++.+.-. ++++. .-..|+.+-. -..+...|...-.+..+ +.||.+. -..-..++.+.|++.++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 999998654 34442 2223333221 23345566665555554 6888653 3445578899999999999
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM----PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
+++.+-+ ..|.+..+... .+.|.|+ .+++=+++. .++|| ..+..++..+-...|++..|..-.+.+..
T Consensus 285 ilE~aWK---~ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 285 ILETAWK---AEPHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred HHHHHHh---cCCChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 9999976 34555443322 2345554 333333332 34565 56777788888899999999999999999
Q ss_pred cCCCCCchHHHHHHHhhhC-CCcchHHHHHHHHHhC
Q 004938 548 LDPDHDGALVLLSNIYAKD-KRWQDVGELRKSMKER 582 (722)
Q Consensus 548 ~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 582 (722)
..|.. +.|.+|+++-... |+-.++...+-+....
T Consensus 358 ~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 EAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99976 5888899887554 8888877777665543
No 183
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.09 E-value=0.0011 Score=52.43 Aligned_cols=81 Identities=15% Similarity=0.241 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 004938 429 HGDARNALIFFNKMKDESI-DPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507 (722)
Q Consensus 429 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 507 (722)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+ .+. .+......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-LDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-HHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-CCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 4667777777777766421 11333444466666777777777777665 21 011 11233334455566666666666
Q ss_pred HHHHh
Q 004938 508 ELVET 512 (722)
Q Consensus 508 ~~~~~ 512 (722)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66553
No 184
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.07 E-value=0.45 Score=48.70 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=45.7
Q ss_pred HHHHhCCCCC----CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 508 ELVETMPFAP----NVVIWGSLMAA--CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 508 ~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
+++++.++.| +...-|.|.+| ...+|++.++.-...-+.+..| ++.+|..++-......++++|..++..+
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3444444443 23344555555 4467777777777777777777 5667777777777777777777777655
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.06 E-value=0.00077 Score=50.86 Aligned_cols=57 Identities=28% Similarity=0.255 Sum_probs=27.4
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchH
Q 004938 500 ANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 500 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
.|++++|+++++++ ...| +...+..+...|...|++++|...++++...+|+++..+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 44445555555444 2222 344444555555555555555555555555555544333
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.04 E-value=0.016 Score=62.85 Aligned_cols=135 Identities=12% Similarity=0.054 Sum_probs=99.2
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc--------CCHHHHHHHHH
Q 004938 446 SIDPNGVTFIGVLYACSHA-----GLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRA--------NLLREALELVE 511 (722)
Q Consensus 446 g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 511 (722)
+...|...|...+.+.... +..++|..+|+++.+ ..|+ ...|..+..+|... ++++++.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456677888888875543 337789999999986 3454 45566555444322 23445555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 512 TM---P-FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 512 ~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
+. + ...+...|..+.-.....|++++|...++++++++|+ ...|..++.+|...|+.++|.+.+++......
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 53 1 2335577888877777889999999999999999995 67999999999999999999999999877543
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.04 E-value=0.015 Score=58.11 Aligned_cols=126 Identities=16% Similarity=0.141 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHH-HHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISA-CAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 395 (722)
+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..||+...+. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45566666666666666666666666432 1122233322222 22345555577777766665 455666666777777
Q ss_pred HhcCCHHHHHHHHHhcCC--C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 396 AKCGSLESAREVFERMRR--R----NVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
.+.|+.+.|+.+|++... + -...|...+.--.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777776654 1 223666666666666666666666666665
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.00 E-value=0.069 Score=47.57 Aligned_cols=131 Identities=13% Similarity=0.062 Sum_probs=96.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C-----CCCCHH
Q 004938 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-P-----FAPNVV 520 (722)
Q Consensus 447 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-----~~p~~~ 520 (722)
+.|....-..|..+....|+..+|...|++... .-+.-|....-.+..+....+++.+|...+++. . ..||..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 466666667777888888888888888888776 233445666667777777788888888888776 1 234443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
..+...+...|..+.|+..|+.++.-.|+. ..-...+..+.++|+.+++..-+..+.+
T Consensus 164 --Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 --LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred --HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 346677888999999999999999988864 4556677888899988888766655544
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.98 E-value=0.01 Score=48.24 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=66.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHccC--------ChHHHHHHHHHHHHcCCCCCHhHH
Q 004938 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNV-EPDEMVLSKILSACSRAG--------NLSYGEAVHEFIIDNNVALDAHLQ 256 (722)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~~ 256 (722)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999999887653 234567889999999999999999
Q ss_pred HHHHHHHHh
Q 004938 257 STLITMYAN 265 (722)
Q Consensus 257 ~~li~~~~~ 265 (722)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987765
No 190
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.98 E-value=0.0087 Score=48.59 Aligned_cols=81 Identities=16% Similarity=0.102 Sum_probs=67.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCC-CCChhhHHHHHHHHHccC--------CchHHHHHHHHHHHcCCCCChhH
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGM-KPDKVTMLSVISACAHLG--------VLDQAQRIHLYIDKNAFGGDLRV 387 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~i~~~~~~~~~~~~~~~ 387 (722)
+-...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. ++-....+++.++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344567777778999999999999999999 999999999999887643 24456778889999899999999
Q ss_pred HHHHHHHHHh
Q 004938 388 NNAIIDMYAK 397 (722)
Q Consensus 388 ~~~li~~~~~ 397 (722)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887765
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.97 E-value=0.0013 Score=49.70 Aligned_cols=64 Identities=25% Similarity=0.254 Sum_probs=51.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCC
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHG-EIELAEFAAKQLLQLDP 550 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 550 (722)
...|..+...+.+.|++++|+..|++. ...|+ ...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777777888888888888888776 44564 568888888899999 79999999999999888
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.96 E-value=0.094 Score=46.72 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=45.4
Q ss_pred CChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHHHHHH
Q 004938 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-----RNVISWTSM 422 (722)
Q Consensus 348 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l 422 (722)
|+...-..+..+....|+..+|...|++...--+..|..+.-.+.++....++...|...++.+.+ +.+.+--.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 343333444445555555555555555554444444444444455555555555555555544432 112222333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 004938 423 INAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 423 i~~~~~~g~~~~A~~~~~~m~~ 444 (722)
...|...|.+.+|...|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 3444445555555555555444
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.93 E-value=0.011 Score=49.94 Aligned_cols=87 Identities=16% Similarity=0.021 Sum_probs=58.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---CCchHHHHHHHhh
Q 004938 493 MVDLFGRANLLREALELVETM---PFAPN--VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD---HDGALVLLSNIYA 564 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 564 (722)
+..++-..|+.++|+.++++. +.... ...+-.+.+.++..|++++|..++++.++..|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555666777777777665 22221 235556777788888888888888888877777 5555666777777
Q ss_pred hCCCcchHHHHHHHH
Q 004938 565 KDKRWQDVGELRKSM 579 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m 579 (722)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888887766443
No 194
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.91 E-value=0.022 Score=49.99 Aligned_cols=83 Identities=7% Similarity=-0.011 Sum_probs=34.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH
Q 004938 425 AFAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503 (722)
Q Consensus 425 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 503 (722)
-+...|++++|..+|+-+.. +.|... -|..|..+|...|++++|+..|..... --+.++..+-.+...|...|+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcCCH
Confidence 33444444444444444443 233322 233344444444444444444444443 1122334444444444444444
Q ss_pred HHHHHHHH
Q 004938 504 REALELVE 511 (722)
Q Consensus 504 ~~A~~~~~ 511 (722)
++|.+.|+
T Consensus 120 ~~A~~aF~ 127 (157)
T PRK15363 120 CYAIKALK 127 (157)
T ss_pred HHHHHHHH
Confidence 44444443
No 195
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.91 E-value=0.017 Score=60.08 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=78.6
Q ss_pred CCCChhhHHHHHHHHHccCCchHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChHHH
Q 004938 346 MKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN--AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR----RNVISW 419 (722)
Q Consensus 346 ~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 419 (722)
.+.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445666666777777777777777766666553 2222234445777777777777777777765443 677777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004938 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464 (722)
Q Consensus 420 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 464 (722)
|.+++.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777777666666666666666666554
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.86 E-value=0.64 Score=47.06 Aligned_cols=109 Identities=21% Similarity=0.277 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 004938 286 VSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365 (722)
Q Consensus 286 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 365 (722)
+.+..|.-+...|+...|.++-.+..-+|...|...+.+++..++|++-.++-.. +-.+.-|-.++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444566667777778888888888888888888889999999998876654321 2234778888899988888
Q ss_pred chHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 366 LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410 (722)
Q Consensus 366 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 410 (722)
..+|..+...+ .+..-+.+|.++|++.+|.+.--+
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 88887766551 125677889999999998776443
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.85 E-value=0.0064 Score=59.52 Aligned_cols=88 Identities=10% Similarity=0.046 Sum_probs=45.5
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---CchHHHHHHHhhh
Q 004938 494 VDLFGRANLLREALELVETM-PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH---DGALVLLSNIYAK 565 (722)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~ 565 (722)
+..+.+.|++++|...|+.+ ...|+ ...+.-+...+...|+++.|...|+++++..|++ +.++..++.+|..
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence 33333445555555555444 11222 1233345555566666666666666666555553 2334445555666
Q ss_pred CCCcchHHHHHHHHHh
Q 004938 566 DKRWQDVGELRKSMKE 581 (722)
Q Consensus 566 ~g~~~~a~~~~~~m~~ 581 (722)
.|++++|.++++.+.+
T Consensus 230 ~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 230 KGDTAKAKAVYQQVIK 245 (263)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665554
No 198
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.85 E-value=0.014 Score=60.72 Aligned_cols=116 Identities=11% Similarity=0.086 Sum_probs=81.3
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHhcCCC-C-----CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 004938 151 DPFVQTGLVGMYGACGKILDARLMFDKMSY-R-----DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224 (722)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 224 (722)
+......+++......+++++..++-+... + -..+.+++|+.|.+.|..+.+++++..=...|+=||.+|++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 334444455555555556666666555432 1 1234568888888888888888888888888888888888888
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 004938 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266 (722)
Q Consensus 225 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 266 (722)
|..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887777666666666555555554
No 199
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.84 E-value=0.004 Score=63.93 Aligned_cols=65 Identities=14% Similarity=0.021 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch---HHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA---LVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 518 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+...|+.+..+|...|++++|+..|+++++++|++..+ |++++.+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34566666666777777777777777777777766533 666777777777777777766666654
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.14 Score=48.28 Aligned_cols=139 Identities=12% Similarity=0.073 Sum_probs=99.3
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHH-----H
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN-----A 390 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~-----~ 390 (722)
...+.++..+.-.|++.-.+.++++.++...+.+..-...+.+.-.+.|+.+.|...++...+..-..+....+ .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566777777778888888888888887655677777778888888899999999998777643333333333 3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004938 391 IIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456 (722)
Q Consensus 391 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 456 (722)
....|.-.+++..|...|+++.. .|++.-|.-.-+..-.|+..+|++..+.|.. ..|...+-++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhh
Confidence 33456667888889999988875 4556666655555567899999999999988 4565554443
No 201
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.75 E-value=0.2 Score=48.71 Aligned_cols=172 Identities=14% Similarity=0.106 Sum_probs=104.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CCh-HH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHH
Q 004938 391 IIDMYAKCGSLESAREVFERMRR--RNV-IS---WTSMINAFAIHGDARNALIFFNKMKDESIDPNG--VTFIGVLYACS 462 (722)
Q Consensus 391 li~~~~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 462 (722)
....+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|+..|++.++. .|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 34445667888888888888764 322 11 234556778888888999888888874 4442 33444444433
Q ss_pred h--cC---------------C---HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 004938 463 H--AG---------------L---VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW 522 (722)
Q Consensus 463 ~--~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 522 (722)
. .+ + ..+|...|+.+++++ -...-..+|...+..+...--..-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y----------------P~S~ya~~A~~rl~~l~~~la~~e- 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY----------------PNSQYTTDATKRLVFLKDRLAKYE- 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC----------------cCChhHHHHHHHHHHHHHHHHHHH-
Confidence 1 11 1 234445555555432 222233444443333310000000
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCC---chHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHD---GALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 523 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
-....-|.+.|.+.-|..-++.+++.-|+.+ .+...+..+|.+.|..++|.++...+..
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 1234457888999999999999999888765 4566888999999999999998876643
No 202
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.74 E-value=0.0028 Score=42.75 Aligned_cols=42 Identities=33% Similarity=0.419 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHH
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSN 561 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 561 (722)
.+|..+..++...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788999999999999999999999999999988877764
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.74 E-value=0.042 Score=46.40 Aligned_cols=106 Identities=12% Similarity=0.126 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCC---ChhHHHHHHHH
Q 004938 320 AMISGYAENNHPQEALKLFNEMQVCGMKPD--KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG---DLRVNNAIIDM 394 (722)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~---~~~~~~~li~~ 394 (722)
.+..++-..|+.++|+.+|++....|...+ ...+..+.+++...|++++|..+++...... +. +..+...+.-+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHH
Confidence 345667778888888888888888776544 2345556667778888888888888776642 11 22222233345
Q ss_pred HHhcCCHHHHHHHHHhcCCCChHHHHHHHHHH
Q 004938 395 YAKCGSLESAREVFERMRRRNVISWTSMINAF 426 (722)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 426 (722)
+...|+.++|.+.+-....++...|.--|..|
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777666554443333444333333
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.73 E-value=0.0048 Score=47.22 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=51.5
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 495 DLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
..|.+.+++++|.+.++++ ...| +...|......+...|++++|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5677888899999988887 5555 4567778888899999999999999999999998765443
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.73 E-value=0.23 Score=50.68 Aligned_cols=160 Identities=16% Similarity=0.087 Sum_probs=97.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-------ChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004938 390 AIIDMYAKCGSLESAREVFERMRRR-------NVISWTSMINAFAI---HGDARNALIFFNKMKDESIDPNGVTFIGVLY 459 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 459 (722)
.++-.|-...+++...++++.+... ....-....-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777777652 11122223334445 7788888888888665555667777766665
Q ss_pred HHHh---------cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHH----HHHHHH---Hh-----C--CCC
Q 004938 460 ACSH---------AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR----EALELV---ET-----M--PFA 516 (722)
Q Consensus 460 a~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~---~~-----~--~~~ 516 (722)
.|-. ....++|...|.+.- .+.|+..+--.++.++...|.-. +..++- .. - .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 4432 224667777777553 44565544334444444444322 222222 11 1 122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 517 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
.|.-.+.+++.++.-.|+.++|.+++++++.+.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 345566789999999999999999999999998764
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.69 E-value=0.81 Score=45.93 Aligned_cols=303 Identities=12% Similarity=0.031 Sum_probs=163.3
Q ss_pred HHHHHHhccCCCCCcchHHHHHHHHHh--CCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHH--hcCChHHHHHHHHHH
Q 004938 68 YYALSIFSQIPAPPSRVSNKFIRAISW--SHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIA--RAEGLLEGMQVHGLG 143 (722)
Q Consensus 68 ~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 143 (722)
..+.+.|..-.+ -..|.+|-.++.. .|+-..|.++-.+-.+. +.-|...+..+|.+-. -.|+.+.|++-|+.|
T Consensus 70 ~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAM 146 (531)
T COG3898 70 YTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAM 146 (531)
T ss_pred HHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 345555543221 2346666666654 45555666655543321 2334444555554332 457777777777777
Q ss_pred HHhCCCCchhhH--HHHHHHHHhCCCHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCC
Q 004938 144 TKLGFGSDPFVQ--TGLVGMYGACGKILDARLMFDKMSYR---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSN-VEPD 217 (722)
Q Consensus 144 ~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 217 (722)
.. .|..... ..|.----+.|..+.|++.-+..-.. -...|.+.+...+..|+++.|+++++.-+... +.++
T Consensus 147 l~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 147 LD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD 223 (531)
T ss_pred hc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh
Confidence 64 2222111 11111223557777777766655432 22346677777888888888888877665432 3333
Q ss_pred Hh--HHHHHHHHHH---ccCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHH
Q 004938 218 EM--VLSKILSACS---RAGNLSYGEAVHEFIIDNNVALDAHL-QSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMV 291 (722)
Q Consensus 218 ~~--t~~~ll~~~~---~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 291 (722)
.. .-..|+.+-. -..+...|+..-.+..+. .||..- --.-...|.+.|++.++-.+++.+-+.....--..+
T Consensus 224 ~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l 301 (531)
T COG3898 224 VAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL 301 (531)
T ss_pred hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH
Confidence 32 1222333222 123455555555555543 333222 223345677888888888887776444333333333
Q ss_pred HHHHhcCCHHHH----HHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH-HccCCc
Q 004938 292 SGYSRAGQVEDA----RLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC-AHLGVL 366 (722)
Q Consensus 292 ~~~~~~g~~~~A----~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~ 366 (722)
..+.+.|+.... .+-+..|...|..+--.+..+-...|++..|..--+.... ..|....|..+...- +..|+-
T Consensus 302 Y~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDq 379 (531)
T COG3898 302 YVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQ 379 (531)
T ss_pred HHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCch
Confidence 344455543322 1235566666666666677777777777766655554443 356666666666554 344777
Q ss_pred hHHHHHHHHHHHcC
Q 004938 367 DQAQRIHLYIDKNA 380 (722)
Q Consensus 367 ~~a~~i~~~~~~~~ 380 (722)
.++++.+.+.++..
T Consensus 380 g~vR~wlAqav~AP 393 (531)
T COG3898 380 GKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHHHHhcCC
Confidence 77777777776653
No 207
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.59 E-value=0.015 Score=53.47 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=68.0
Q ss_pred CCCcccHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC----------------ChHHHH
Q 004938 180 YRDIVPWSVMIDGYFQ-----NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG----------------NLSYGE 238 (722)
Q Consensus 180 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------------~~~~a~ 238 (722)
.+|-.+|..+|..|.+ .|..+=....+..|.+-|+.-|..+|+.||+.+=+.. +-+.|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4555566666666654 3566666677788888888888888888888764422 346788
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 004938 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCM 269 (722)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 269 (722)
+++++|...|+-||..++..|++.+++.+..
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 9999999999999999999999998887753
No 208
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.54 E-value=1.2 Score=45.85 Aligned_cols=406 Identities=9% Similarity=0.072 Sum_probs=195.3
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCc------hhhHHHHHHHHHhCCCHHHHHHHHhcCCCCC-cccHHHHHHHH--HhCCC
Q 004938 128 ARAEGLLEGMQVHGLGTKLGFGSD------PFVQTGLVGMYGACGKILDARLMFDKMSYRD-IVPWSVMIDGY--FQNGL 198 (722)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~--~~~g~ 198 (722)
-+.++..++..+|.++.+.. ..+ ....+.++++|.- .+++.-........+.. -..|-.+..++ -+.+.
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 36788899999998887653 222 2334566777754 34444444444443322 33466665543 35788
Q ss_pred hhHHHHHHHHHHHC--CCCCC-----------HhH-HHHHHHHHHccCChHHHHHHHHHHHHcCCC----CCHhHHHHHH
Q 004938 199 FDEVLNLFEEMKMS--NVEPD-----------EMV-LSKILSACSRAGNLSYGEAVHEFIIDNNVA----LDAHLQSTLI 260 (722)
Q Consensus 199 ~~~A~~~~~~m~~~--g~~p~-----------~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~----~~~~~~~~li 260 (722)
+++|++.+..-... +-+|. .+. =+..+......|.+.+|+.+++.++..=++ -+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 88888888777554 32221 111 133445566778888888777777654333 6777777777
Q ss_pred HHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhc--CCchHHHHHH
Q 004938 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAEN--NHPQEALKLF 338 (722)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~ 338 (722)
-++++.=-++.- +.+...=..-|--|+..|.+.=..-++.. +++.. |-......++....-. .+..--.+++
T Consensus 175 lmlsrSYfLEl~----e~~s~dl~pdyYemilfY~kki~~~d~~~-Y~k~~-peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 175 LMLSRSYFLELK----ESMSSDLYPDYYEMILFYLKKIHAFDQRP-YEKFI-PEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHhHHHHHHHH----HhcccccChHHHHHHHHHHHHHHHHhhch-HHhhC-cHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 776654222211 11111112234445555433211111100 00000 0001111111111111 1122222333
Q ss_pred HHHHhCCCCCChh-hHHHHHHHHHccCCchHHHHHHHHHHHcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 004938 339 NEMQVCGMKPDKV-TMLSVISACAHLGVLDQAQRIHLYIDKNAFGG----DLRVNNAIIDMYAKCGSLESAREVFERMRR 413 (722)
Q Consensus 339 ~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 413 (722)
..-...-+.|+.. ....+...+.+ +.+++..+-+.+....+.+ -+..+..++....+.++...|.+.+.-+.-
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3333344566543 23334444443 5666666655554432211 234566667777788888888888776653
Q ss_pred --CChH-------HHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH---HHHHhcCC-HHHHHHHHH
Q 004938 414 --RNVI-------SWTSMINAFAI----HGDARNALIFFNKMKDESIDPNGVTF-IGVL---YACSHAGL-VDEGREIFA 475 (722)
Q Consensus 414 --~~~~-------~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll---~a~~~~g~-~~~a~~~~~ 475 (722)
|+.. +-.++-+..+. ..+...=+.+|+..... ..|..-. ..++ .-+-+.|. -++|.++++
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~--DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY--DIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh--cccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 4332 11222222221 11112223333333321 1111100 0011 11122222 233333322
Q ss_pred Hh----------------------------------------HhhcCCCCC----cchHHHHHHH--HHhcCCHHHHHHH
Q 004938 476 SM----------------------------------------TNEYNIPPK----YEHYGCMVDL--FGRANLLREALEL 509 (722)
Q Consensus 476 ~~----------------------------------------~~~~~~~~~----~~~~~~li~~--~~~~g~~~~A~~~ 509 (722)
.+ +++-|++|- .+.-|+|.++ +...|++.++.-.
T Consensus 405 ~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 405 LILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 22 222355553 2344555554 3456777776654
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 510 VETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 510 ~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 545 (722)
-.-. .+.|++.+|..++-....+.++++|...+..+
T Consensus 485 s~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 485 SSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3333 57899999988888888899999999887654
No 209
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.48 E-value=1.7 Score=46.99 Aligned_cols=30 Identities=13% Similarity=-0.091 Sum_probs=18.1
Q ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHhcC
Q 004938 149 GSDPFVQTGLVGMYGACGKILDARLMFDKM 178 (722)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 178 (722)
.|.+..|..|...-.+.-.++-|+..|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 566666666666555555666666655444
No 210
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.48 E-value=1.3 Score=45.46 Aligned_cols=144 Identities=17% Similarity=0.233 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR-----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF-IGVL 458 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll 458 (722)
..+|..+++.-.+..-++.|+.+|-+..+ +++..++++|.-++ .|+..-|..+|+--.. .-||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 45666677777777777777777777654 56667777777665 4666777777776444 24554433 3445
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcC
Q 004938 459 YACSHAGLVDEGREIFASMTNEYNIPPK--YEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACRVHG 533 (722)
Q Consensus 459 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g 533 (722)
.-+...++-+.|..+|+.... .+..+ ...|..+++-=..-|++..+..+=+++ ..-|...+-....+-|....
T Consensus 474 ~fLi~inde~naraLFetsv~--r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 474 LFLIRINDEENARALFETSVE--RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHH--HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 556677888888888886665 23333 567888888888888988888877777 34455555555555565443
No 211
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.46 E-value=1.6 Score=46.56 Aligned_cols=181 Identities=17% Similarity=0.137 Sum_probs=125.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRR---NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 460 (722)
+..+|...++.-.+.|+.+.+.-+|++..-| -...|--.+.-....|+.+-|-.++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4667888888889999999999999988754 3346666666666668888888777766553233223332222233
Q ss_pred HHhcCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 004938 461 CSHAGLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRANLLREAL---ELVETM-PFAPNVVIWGSLMA-----ACR 530 (722)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~-----~~~ 530 (722)
+-..|+.+.|..+++.+.+++ |+ ...-.--+.+..|.|..+.+. +++... +..-+..+...+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 567899999999999999853 44 344444566677889998888 555544 22222222222221 244
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCC
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 567 (722)
..++.+.|..++.++.+..|++...|..+.++....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5789999999999999999999999998888876655
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.43 E-value=0.034 Score=54.53 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=57.1
Q ss_pred HhcCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCH
Q 004938 462 SHAGLVDEGREIFASMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETM-PFAPN----VVIWGSLMAACRVHGEI 535 (722)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~ 535 (722)
.+.|++++|...|+.+.+.+.-.+ ....+--+...|...|++++|...|+.+ ...|+ ...|..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 444566666666666655321111 0134445566666666666666666665 11122 34555566677789999
Q ss_pred HHHHHHHHHHHccCCCCC
Q 004938 536 ELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 536 ~~a~~~~~~~~~~~p~~~ 553 (722)
+.|...|+++++..|++.
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 999999999999999875
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.091 Score=49.49 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=97.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC----CchHH-----HHH
Q 004938 220 VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK----NLVVS-----TAM 290 (722)
Q Consensus 220 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-----~~l 290 (722)
...+++......+.+.-...++..+++...+.++.....|+++-.+.||.+.|...|+++.+. |.... ..+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445666666777888888888888888877788888999999999999999999999866432 22222 233
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHH
Q 004938 291 VSGYSRAGQVEDARLIFDQMVEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356 (722)
Q Consensus 291 i~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 356 (722)
...|.-++++.+|...|++++.. |++.-|.-.-...-.|+..+|++.++.|.+. .|...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 34466778888888888887665 4555665555566678889999999998875 4555444433
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=2.1 Score=46.87 Aligned_cols=109 Identities=16% Similarity=0.195 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 467 (722)
.+--+.-+...|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+.+. .+.-|.-...+|.+.|+.
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccH
Confidence 34444456677888899998888888888888888888888888887666655432 145566778888999999
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 512 (722)
++|..++-+... . .-.+.+|.+.|++.+|.++--+
T Consensus 761 ~EA~KYiprv~~---l-------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 761 DEAKKYIPRVGG---L-------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhhhhhccCC---h-------HHHHHHHHHhccHHHHHHHHHH
Confidence 998888765431 1 1567888888888888776544
No 215
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.35 E-value=0.029 Score=51.64 Aligned_cols=93 Identities=11% Similarity=0.195 Sum_probs=64.0
Q ss_pred Hhcc--CCCCcchHHHHHHHHHhc-----CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc----------------
Q 004938 307 FDQM--VEKDLICWSAMISGYAEN-----NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHL---------------- 363 (722)
Q Consensus 307 f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---------------- 363 (722)
|+.. ..+|..+|..++..|.+. |..+-....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 37 f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp 116 (228)
T PF06239_consen 37 FERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYP 116 (228)
T ss_pred HHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCc
Confidence 5554 445666777777766644 56666677778888888888888888888776432
Q ss_pred CCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 004938 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399 (722)
Q Consensus 364 g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 399 (722)
.+-+-|..++++|...|+-||..++..|++.+++.+
T Consensus 117 ~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 117 RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 234556777777777777777777777777775544
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=2.2 Score=46.66 Aligned_cols=335 Identities=9% Similarity=0.049 Sum_probs=177.2
Q ss_pred CCCCCCHhHHH-----HHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC---hHHHHHHHHhccc--
Q 004938 212 SNVEPDEMVLS-----KILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGC---MDMAKGLFDKVLL-- 281 (722)
Q Consensus 212 ~g~~p~~~t~~-----~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~-- 281 (722)
-|+..+..-|. .+|.-+...+.+..|.++-..+...-... ..++.....-+.+..+ -+-+..+=+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 45555554443 34555556666777777665553221111 4566666666665532 2233333333333
Q ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHhccCCC--------CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhH
Q 004938 282 KNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK--------DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353 (722)
Q Consensus 282 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 353 (722)
..-++|..+..---.+|+.+-|.++++.=+.. +..-+..-+.-..+.|+.+-...++-.+.+. .+...|
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH
Confidence 34456666666666777777777776543222 1222333444445555555555555444432 111111
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH--HhcC-----CCChHHHHHHHHHH
Q 004938 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF--ERMR-----RRNVISWTSMINAF 426 (722)
Q Consensus 354 ~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--~~~~-----~~~~~~~~~li~~~ 426 (722)
...+ .+...|..+|.+..+..-. ..|-+.|-...+. .+...| +... +.-........+.+
T Consensus 582 ~~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~ 648 (829)
T KOG2280|consen 582 FMTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANAF 648 (829)
T ss_pred HHHH------HhchhhhHHHHHHHHhhch------hhhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHHH
Confidence 1111 1223344444444332100 1111222222222 221111 1100 01111122222333
Q ss_pred HHcCC---HH-------HHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 427 AIHGD---AR-------NALIFFNKMKD-ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 427 ~~~g~---~~-------~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
.+... .+ +-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~ 723 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLT 723 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHH
Confidence 33322 11 22223333332 2333444566666777888999999988876553 378888888899
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHH
Q 004938 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 575 (722)
+++..+++++-+++-+++. .+.-|.-...+|.+.|+.++|...+-+.-.+ .-...+|.+.|++.+|.+.
T Consensus 724 aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHH
Confidence 9999999999998888773 1344556778999999999999887665322 2567889999999999877
Q ss_pred HHHH
Q 004938 576 RKSM 579 (722)
Q Consensus 576 ~~~m 579 (722)
--+-
T Consensus 793 A~~~ 796 (829)
T KOG2280|consen 793 AAEH 796 (829)
T ss_pred HHHh
Confidence 5443
No 217
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.29 E-value=0.37 Score=46.89 Aligned_cols=177 Identities=13% Similarity=0.091 Sum_probs=81.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-HH---HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004938 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM-VL---SKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264 (722)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~---~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 264 (722)
....+.+.|++++|++.|++.... -|+.. +. -.+..++.+.++++.|...++..++.-+.....-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 344455667777777777777664 23222 11 2344556677777777777777776543222222222222221
Q ss_pred h--cC---------------ChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 004938 265 N--CG---------------CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAE 327 (722)
Q Consensus 265 ~--~g---------------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 327 (722)
. .+ +...+.+.+ ..+..++.-|=.+.-..+|...+..+..+-...--.+...|.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~--------~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAF--------RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHH--------HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 10 111111110 1122333333333334444433333322211111133445666
Q ss_pred cCCchHHHHHHHHHHhC--CCCCChhhHHHHHHHHHccCCchHHHHHHHH
Q 004938 328 NNHPQEALKLFNEMQVC--GMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375 (722)
Q Consensus 328 ~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~ 375 (722)
.|.+..|+.-|+.+++. +.+........+..++...|..++|..+...
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 77777777777766653 1112223444555555566666655554443
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.28 E-value=0.15 Score=51.22 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=32.0
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHccCChHHHHHHHHH
Q 004938 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEM----VLSKILSACSRAGNLSYGEAVHEF 243 (722)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~ 243 (722)
-+++.|+....+.+|+...+.|.. |.. .|..|-++|.-.+++++|.+.|..
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 356777777777777777776632 333 344455566666677777776643
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.24 E-value=0.22 Score=52.88 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=52.6
Q ss_pred HHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 004938 85 SNKFIRAISWSHR--PKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162 (722)
Q Consensus 85 ~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 162 (722)
++.--.+|.+-.+ +-+.+.-+++|.++|-.|+.... ...|+-.|.+.+|.++|. +.|.+ |..+.+|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk---~~G~e------nRAlEmy 668 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK---RSGHE------NRALEMY 668 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH---HcCch------hhHHHHH
Confidence 4444455554433 34455566778888888887543 344666788888888875 44533 5567778
Q ss_pred HhCCCHHHHHHHHhc
Q 004938 163 GACGKILDARLMFDK 177 (722)
Q Consensus 163 ~~~g~~~~A~~~f~~ 177 (722)
-....+|.|.++...
T Consensus 669 TDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHHHhhc
Confidence 777778888777654
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.16 E-value=0.096 Score=46.50 Aligned_cols=107 Identities=20% Similarity=0.209 Sum_probs=71.3
Q ss_pred HHhcCCHHHHHHHHHHhHhhcCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004938 461 CSHAGLVDEGREIFASMTNEYNIP--PKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538 (722)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 538 (722)
....|+.+.+.+.+..+..-+.-+ |+... ........+.+++. -......++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 345667777777777776543221 11111 11222222333322 123456677788899999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
...+++++..+|-+...|..+..+|...|+..+|.++++.+..
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998863
No 221
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.15 E-value=1.3 Score=42.23 Aligned_cols=196 Identities=21% Similarity=0.149 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMR-----RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 459 (722)
..........+...+.+..+...+.... ......+..+...+...++...+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3445555556666666666666655543 23334555555556666666677777666665322221 11112222
Q ss_pred -HHHhcCCHHHHHHHHHHhHhhcCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcC
Q 004938 460 -ACSHAGLVDEGREIFASMTNEYNI--PPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN--VVIWGSLMAACRVHG 533 (722)
Q Consensus 460 -a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g 533 (722)
.+...|+++++...+..... ... ......+......+...++.++|...+.+. ...|+ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 56667777777777776633 111 012223333333455667777777777666 33333 456666667777777
Q ss_pred CHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 534 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+.+.+...+.++.+..|.....+..++..+...|.++++...+....+.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777764455556666666666677777766666553
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.057 Score=54.40 Aligned_cols=63 Identities=16% Similarity=0.034 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.++..|...|.+.+++..|+....++++++|+|..+.+.-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 456667777888999999999999999999999999999999999999999999999999874
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.05 E-value=0.0088 Score=46.46 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc----CCC---CCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQL----DPD---HDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
.+++.+...+...|++++|+..+++++++ +++ ...++..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46677777788888888888888887754 222 234666888888888888888888877643
No 224
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.93 E-value=1.6 Score=41.52 Aligned_cols=219 Identities=21% Similarity=0.152 Sum_probs=144.0
Q ss_pred CCchHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCCchHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004938 329 NHPQEALKLFNEMQVCGMK-PDKVTMLSVISACAHLGVLDQAQRIHLYIDKN-AFGGDLRVNNAIIDMYAKCGSLESARE 406 (722)
Q Consensus 329 g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 406 (722)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...++++.+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 12345555555666666666666666655542 233444555566666677777778877
Q ss_pred HHHhcCC--CCh-HHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004938 407 VFERMRR--RNV-ISWTSMIN-AFAIHGDARNALIFFNKMKDESIDP----NGVTFIGVLYACSHAGLVDEGREIFASMT 478 (722)
Q Consensus 407 ~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 478 (722)
.+..... ++. ........ .+...|+.+.|...|.+... ..| ....+......+...++.+++...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777664 221 22333333 67888999999999998855 344 23344444445677889999999999888
Q ss_pred hhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 479 NEYNIPP-KYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 479 ~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
. ..+. ....+..+...+...+.+++|...+... ...|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 195 ~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 K--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 6 3334 4677888888899999999999999887 44454 455555666666777899999999999999887
No 225
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.91 E-value=0.52 Score=39.60 Aligned_cols=140 Identities=17% Similarity=0.165 Sum_probs=85.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 004938 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 506 (722)
.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 3467778888888877663 23444555554444445555556666665443222 234444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCc
Q 004938 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585 (722)
Q Consensus 507 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 585 (722)
...+-.++ .+.......+++...+|+-+.-.+++..+.+.+..++.....++++|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444443 133445566788889999999999999998766667789999999999999999999999999999975
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.86 E-value=0.012 Score=45.78 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004938 489 HYGCMVDLFGRANLLREALELVETM-------P-FAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQL 548 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 548 (722)
.|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|+..+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444555555555555555555443 1 1122 456777788888888888888888887754
No 227
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.09 Score=51.06 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 415 NVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 415 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
|...|-.|...|...|+.+.|...|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444555555555555555555555555544
No 228
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=1.9 Score=43.75 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=22.9
Q ss_pred HHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004938 427 AIHGDARNALIFFNKMKDE---SIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 477 (722)
.+.|++..|.+.|.+.+.. ..+|+...|.....+..+.|+.++|+.--+..
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 3455555555555554441 12222233444444444555555555444443
No 229
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.50 E-value=0.99 Score=42.61 Aligned_cols=161 Identities=17% Similarity=0.152 Sum_probs=85.2
Q ss_pred HHHhcCCHHHHHHHHHhcCC--CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHh--
Q 004938 394 MYAKCGSLESAREVFERMRR--RN----VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG--VTFIGVLYACSH-- 463 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~-- 463 (722)
.+...|++++|.+.|+.+.. |+ ....-.++.++.+.|++++|...|++.++. -|+. ..+...+.+.+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 34556677777777766653 21 234455666777777777777777777663 3332 122222222221
Q ss_pred -----------cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004938 464 -----------AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532 (722)
Q Consensus 464 -----------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 532 (722)
.+...+|...|+.+++++ =......+|...+..+...--.. --.+..-|.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~y----------------P~S~y~~~A~~~l~~l~~~la~~-e~~ia~~Y~~~ 154 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKRY----------------PNSEYAEEAKKRLAELRNRLAEH-ELYIARFYYKR 154 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHCT
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHHC----------------cCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc
Confidence 122334555555555432 22233334443333321000000 01234457788
Q ss_pred CCHHHHHHHHHHHHccCCCCCc---hHHHHHHHhhhCCCcchHH
Q 004938 533 GEIELAEFAAKQLLQLDPDHDG---ALVLLSNIYAKDKRWQDVG 573 (722)
Q Consensus 533 g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 573 (722)
|.+..|..-++.+++.-|+.+. +...++.+|.+.|..+.|.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999999988653 4567888888888887444
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.45 E-value=0.058 Score=55.69 Aligned_cols=63 Identities=16% Similarity=0.026 Sum_probs=47.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004938 486 KYEHYGCMVDLFGRANLLREALELVETM-PFAPNV----VIWGSLMAACRVHGEIELAEFAAKQLLQL 548 (722)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 548 (722)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556777777777888888888887775 566663 35788888888888888888888888876
No 231
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.45 E-value=0.12 Score=43.13 Aligned_cols=89 Identities=21% Similarity=0.154 Sum_probs=66.1
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCC---chHHHHHHHhhhCCCc
Q 004938 496 LFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLD-PDHD---GALVLLSNIYAKDKRW 569 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~~ 569 (722)
++...|+++.|++.|.+. .+-| ....||.-..+++-+|+.++|+.-+++++++. |... ..|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456677778887777765 3333 56778888888888888888888888888874 3321 3567778888888888
Q ss_pred chHHHHHHHHHhCCC
Q 004938 570 QDVGELRKSMKERGI 584 (722)
Q Consensus 570 ~~a~~~~~~m~~~g~ 584 (722)
+.|..-|+..-+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888888777663
No 232
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.37 E-value=1.2 Score=42.15 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHH
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPN----GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 493 (722)
.+-.....+...|++.+|++.|+++... -|+ ......++.++.+.|++++|...++...+.+.-.|... +...
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y 83 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALY 83 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHH
Confidence 3334455567788888888888888774 232 23456677788888888888888888877554433321 1111
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc-----------------hH
Q 004938 494 VDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG-----------------AL 556 (722)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~ 556 (722)
..+.+.-....... ......+...+|...++.+++..|+++- .-
T Consensus 84 ~~g~~~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 84 MLGLSYYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp HHHHHHHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 11111100000000 0112233456677777777777777552 22
Q ss_pred HHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 557 VLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 557 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..++..|.+.|.+..|..-++.+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 35788899999999999999998774
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.4 Score=48.57 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhC
Q 004938 489 HYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 566 (722)
.+..+.-.|.+.+.+.+|+...++. ..+| |.-..---..+|...|+++.|+..|+++++++|+|-.+...|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4566677777888888888777766 3344 5556666678899999999999999999999999988888888777666
Q ss_pred CCcchH-HHHHHHHHhC
Q 004938 567 KRWQDV-GELRKSMKER 582 (722)
Q Consensus 567 g~~~~a-~~~~~~m~~~ 582 (722)
...++. .++|..|-.+
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 655554 6788888654
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.23 E-value=0.44 Score=47.18 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=59.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhcCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHH-----
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEYNIPP----KYEHYGCMVDLFGRANLLREALELVETM-------PFAPNVV----- 520 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~----- 520 (722)
+..+....+.++++++.|+.+.+-..-.. ...+|..|...|++..++++|.-+..+. +++.-..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 33444445556666666666554111111 1345666666666666666655444332 2221111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCCC----chHHHHHHHhhhCCCcchHHHHHHH
Q 004938 521 IWGSLMAACRVHGEIELAEFAAKQLLQLD--PDHD----GALVLLSNIYAKDKRWQDVGELRKS 578 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~ 578 (722)
+...+.-+++..|..-.|.+..+++.++. ..|. .....++++|...|+.+.|..-++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 12223335566666666666666655432 1221 2233566666666666665554444
No 235
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.23 E-value=0.21 Score=42.66 Aligned_cols=50 Identities=14% Similarity=0.289 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 446 SIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 446 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
...|+..+..+++.+++..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 35577777777777777777777777777777777776666666665554
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.17 E-value=0.12 Score=49.65 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=27.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCC---CchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 525 LMAACRVHGEIELAEFAAKQLLQLDPDH---DGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 525 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
|+..+...|+++.|...|..+.+-.|++ +..+.-|+.+..+.|+.++|..+++++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444555555555555555555443332 23444555555555555555555555443
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=95.17 E-value=0.7 Score=48.09 Aligned_cols=142 Identities=13% Similarity=0.130 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHHh---------cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc
Q 004938 432 ARNALIFFNKMKD-ESIDPNGV-TFIGVLYACSH---------AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500 (722)
Q Consensus 432 ~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 500 (722)
.+.|+.+|.+... ..+.|+.. .|..+..++.. .....+|.+.-+...+ --+.|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 4577778888772 23567643 33333322211 2345566666666665 3344566666666666777
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH--HHHHHhhhCCCcchHHHHH
Q 004938 501 NLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV--LLSNIYAKDKRWQDVGELR 576 (722)
Q Consensus 501 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~~~ 576 (722)
|+++.|...|++. ...|| ..+|......+.-.|+.++|.+.++++++++|.-..+-. ..+++|... ..++|.+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 7788888888887 56665 456666666677788888888888888888887554433 333345543 345555554
No 238
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=7 Score=43.59 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=92.6
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCCCcccHH----HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC
Q 004938 157 GLVGMYGACGKILDARLMFDKMSYRDIVPWS----VMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG 232 (722)
Q Consensus 157 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 232 (722)
.-++++.+...++.|+.+-+.-.. |...-. .-.+-+.+.|++++|...|-+-... +.|. .++.-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 345555666666666666544322 111111 1223345678888887777665432 2332 2344444444
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCch--HHHHHHHHHHhcCCHHHHHHHHhcc
Q 004938 233 NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLV--VSTAMVSGYSRAGQVEDARLIFDQM 310 (722)
Q Consensus 233 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~ 310 (722)
....--.+++.+.+.|+. +...-+.|+.+|.|.++.++-.+..++.. .+.. -....+..+-+.+-.++|..+-..-
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 445555566677777765 55566778888888888887777766654 2211 1233444444555555554443333
Q ss_pred CCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004938 311 VEKDLICWSAMISGYAENNHPQEALKLFNEM 341 (722)
Q Consensus 311 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 341 (722)
.. +... +--.+-..+++++|++.+..|
T Consensus 490 ~~-he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred cc-CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 22 1222 222334557778888777665
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.10 E-value=0.25 Score=42.64 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=36.7
Q ss_pred HhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 498 GRANLLREALELVETM----PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 498 ~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
.+.|++++|.+.|+.+ |..| ..-.-..|+.++.+.+++++|...+++.+++.|.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 4456666666666555 2222 1233445677788888888888888888888877654
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=95.03 E-value=0.29 Score=50.83 Aligned_cols=117 Identities=12% Similarity=0.104 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 004938 466 LVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGR---------ANLLREALELVETM-PFAP-NVVIWGSLMAACRVHG 533 (722)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 533 (722)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788888888744455565 3555555544322 23455677777666 4555 6677777777778888
Q ss_pred CHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 534 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+++.|...|+++..++|+.+..+...+.+..-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999886554
No 241
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=7.4 Score=43.05 Aligned_cols=101 Identities=11% Similarity=0.082 Sum_probs=59.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCC---chhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhH
Q 004938 125 KAIARAEGLLEGMQVHGLGTKLGFGS---DPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDE 201 (722)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 201 (722)
+.+.+.+.+++|...-+... |..+ -..++..+|..+...|++++|-.+.-.|...+..-|-..+.-+...++...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 34444555555555443322 2233 334566777777778888888888877777777777777777777766554
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 004938 202 VLNLFEEMKMSNVEPDEMVLSKILSACSR 230 (722)
Q Consensus 202 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 230 (722)
...+ +....-+.+...|..+|..+..
T Consensus 442 Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 442 IAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 4333 2222222345566666666654
No 242
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.91 E-value=0.047 Score=34.18 Aligned_cols=33 Identities=30% Similarity=0.246 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888899999999999999999999999863
No 243
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.81 E-value=0.072 Score=33.24 Aligned_cols=33 Identities=30% Similarity=0.288 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457778888999999999999999999999875
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.75 E-value=7.1 Score=42.18 Aligned_cols=172 Identities=17% Similarity=0.154 Sum_probs=112.0
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHh------HHHHHHHHHHh----cCChHH
Q 004938 202 VLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAH------LQSTLITMYAN----CGCMDM 271 (722)
Q Consensus 202 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~------~~~~li~~~~~----~g~~~~ 271 (722)
...+|.-+... ++| .+..++....-.||-+.+.+.+....+.+-...+. .|...+..++- ....+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34555555543 333 35566777777899999999888876643221222 23333333332 456788
Q ss_pred HHHHHHhccc--CCchHHHHH-HHHHHhcCCHHHHHHHHhccCCC-------CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 004938 272 AKGLFDKVLL--KNLVVSTAM-VSGYSRAGQVEDARLIFDQMVEK-------DLICWSAMISGYAENNHPQEALKLFNEM 341 (722)
Q Consensus 272 A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m 341 (722)
|.++++.+.. |+...|.-. ...+...|++++|.+.|++.... ....+--+.-.+.-.++|++|.+.|..+
T Consensus 252 a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 9999999876 666666543 34567789999999999975432 2234555666788889999999999999
Q ss_pred HhCCCCCChhhHHHHHHHH-HccCCc-------hHHHHHHHHHHH
Q 004938 342 QVCGMKPDKVTMLSVISAC-AHLGVL-------DQAQRIHLYIDK 378 (722)
Q Consensus 342 ~~~g~~p~~~t~~~ll~~~-~~~g~~-------~~a~~i~~~~~~ 378 (722)
.+.. ..+..+|.-+..+| ...|+. ++|..++..+..
T Consensus 332 ~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 332 LKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred Hhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8754 44455555555544 456666 777777776643
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.69 E-value=3.3 Score=39.65 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDES-IDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 494 (722)
..|-.-+..-.+.|++++|.+.|+.+...- ..| ...+...++.+..+.+++++|....++..+.++-.|+.. |...+
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Yl 113 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYL 113 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHH
Confidence 334444444556778888888887777631 111 234566666677777777787777777777666666543 33333
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC-----------------chH
Q 004938 495 DLFGRANLLREALELVETMP-FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD-----------------GAL 556 (722)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~ 556 (722)
.++. .|..++ ...|. .-...|...++.++..-|++. ..-
T Consensus 114 kgLs----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 114 KGLS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred HHHH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 3333 111111 00011 112344455555555555543 223
Q ss_pred HHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 557 VLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 557 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..+++.|.+.|.|..|..-++.|.+.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 46788999999999999999999885
No 246
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.48 E-value=0.42 Score=40.85 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhH--------------hhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---
Q 004938 451 GVTFIGVLYACSHAGLVDEGREIFASMT--------------NEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--- 513 (722)
Q Consensus 451 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--- 513 (722)
..++..++.++++.|+++....+.+..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455555556666666555555554331 11233455555555555555555555555555544
Q ss_pred -CCCCCHHHHHHHHHHH
Q 004938 514 -PFAPNVVIWGSLMAAC 529 (722)
Q Consensus 514 -~~~p~~~~~~~ll~~~ 529 (722)
+++-+...|..|+.-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 3333455555555443
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=1.2 Score=43.87 Aligned_cols=112 Identities=9% Similarity=0.062 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhcCCHHHHH
Q 004938 399 GSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGV----LYACSHAGLVDEGR 471 (722)
Q Consensus 399 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----l~a~~~~g~~~~a~ 471 (722)
|+..+|-..++++.+ .|..+|+--=.+|.-.|+.+.-...+++.... ..||...|..+ .-++...|-+++|.
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 444444444444432 34444554445555555555555555554432 23333222111 11233445555555
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 472 EIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
+.-++..+ --+.|.-.-.++...+...|+..|+.+++.+-
T Consensus 196 k~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 196 KQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 55444433 11112222223344444455555555555443
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.36 E-value=1 Score=46.98 Aligned_cols=147 Identities=16% Similarity=0.122 Sum_probs=80.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHH---
Q 004938 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR--- 504 (722)
Q Consensus 428 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--- 504 (722)
+..+...-+++-++..+ +.||..+-..++ +--....+.++.++|++..+. +- . .|.+....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~-------~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----A-------SLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----H-------hhchhhhhhccc
Confidence 45556666666666666 567665433333 223345577888888776652 10 0 001100000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 505 EALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD--HDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 505 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...+.+.+-...|-..+=..|...+++.|+.++|.+.++.+++..|. +-....+|++.+...+.+.++..++.+--+-
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 01111111111122223344555667788888888888888876664 3446667888888888888888887776443
Q ss_pred CCccCCc
Q 004938 583 GILKERA 589 (722)
Q Consensus 583 g~~~~~~ 589 (722)
...+...
T Consensus 325 ~lpkSAt 331 (539)
T PF04184_consen 325 SLPKSAT 331 (539)
T ss_pred cCCchHH
Confidence 3333333
No 249
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.33 E-value=3.3 Score=36.21 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChh
Q 004938 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200 (722)
Q Consensus 121 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 200 (722)
..++..+...+.......+++.+.+.+ ..+...+|.|+..|++.. ..+....++. ..+......+++.+.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 445555555555556666666665554 345556666666666543 2333344431 123333444555555555555
Q ss_pred HHHHHHHHH
Q 004938 201 EVLNLFEEM 209 (722)
Q Consensus 201 ~A~~~~~~m 209 (722)
++.-++..+
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 555555554
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.32 E-value=3 Score=43.76 Aligned_cols=103 Identities=11% Similarity=0.162 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCC--HHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP-F-APN--VVIWGSLMAA 528 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~ll~~ 528 (722)
+-..+..++-+.|..++|.+.|.++.+++.......+...|+..|...+.+.++..++.+-. + -|. ...|+..+--
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 33456677788999999999999998754333345577789999999999999999998873 1 233 3566666555
Q ss_pred HHHcCC---------------HHHHHHHHHHHHccCCCCCch
Q 004938 529 CRVHGE---------------IELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 529 ~~~~g~---------------~~~a~~~~~~~~~~~p~~~~~ 555 (722)
.+..++ ...|.++..++.+.+|..+.+
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 554443 134568899999999886643
No 251
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.30 E-value=14 Score=43.17 Aligned_cols=54 Identities=22% Similarity=0.182 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004938 297 AGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361 (722)
Q Consensus 297 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 361 (722)
.+++++|+..+.++. ...|.-.+..--+.|.+.+|+.++ +|+...+..+..+|+
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya 946 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYA 946 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHH
Confidence 345556655555544 223444455555666666666664 577776666665553
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.30 E-value=0.67 Score=49.24 Aligned_cols=131 Identities=19% Similarity=0.213 Sum_probs=87.6
Q ss_pred HHHcCCHHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH
Q 004938 426 FAIHGDARNALIFFN--KMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 503 (722)
....|+++++.++.+ ++.. .++ ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 345677777766654 1111 111 33467777778888888888877554333 24566788999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 504 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
+.|.++.++.. +...|..|......+|+++.|+++|++. .-+..|.-+|...|+.+.-.++.+...++|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99998887764 7789999999999999999999999885 356678888888999888777777776665
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=1.2 Score=43.40 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=80.0
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGS---LMAACRVHGEIE 536 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~~ 536 (722)
.....|+..+|...|+.... -.+-+...-..|+..|...|+.++|..++..+|.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 45567788888888887776 3344456667788888888888888888888864433333333 122222222222
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 537 LAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 537 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+.. .+++-+..+|++...-..++..|...|+.++|.+.+=.+..+
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 233445678998888899999999999999999887766654
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.25 E-value=1.2 Score=38.47 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=55.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC
Q 004938 425 AFAIHGDARNALIFFNKMKDESIDPN---GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501 (722)
Q Consensus 425 ~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 501 (722)
...+.|++++|++.|+.+... .+.. ...-..++.++.+.+++++|...+++.++-+.-.|+ ..|.....+++.-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHH
Confidence 344566666666666666653 1111 234455566666666666666666666654333333 22333333332222
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 502 LLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 502 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
..+..+.-+- +.+ +..+....|...|++++..-|++.
T Consensus 97 ~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 1111111110 111 112235678888888888888864
No 255
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.23 E-value=2.3 Score=37.20 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004938 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA-NLLREALELVETMPFAPNVVIWGSLMAAC 529 (722)
Q Consensus 455 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 529 (722)
..++..|.+.+.++++..++..+.. |...++.+... ++.+.|.+++.+- .+...|..++..+
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 3345555555555555555544321 22223333333 5555566655552 2444555555444
No 256
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.18 E-value=0.32 Score=46.43 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=78.6
Q ss_pred HHHHHHhcCC--CCCcccHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC----------
Q 004938 170 DARLMFDKMS--YRDIVPWSVMIDGYFQN-----GLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG---------- 232 (722)
Q Consensus 170 ~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---------- 232 (722)
..++.|...+ ++|-.+|-+.+..+... +..+=....++.|.+-|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 56777888888777654 556666677889999999999999999998775533
Q ss_pred ------ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 004938 233 ------NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269 (722)
Q Consensus 233 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 269 (722)
+-+-+..++++|...|+-||..+-..|++++.+.+-.
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345788999999999999999999999999888764
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.13 E-value=5.7 Score=38.09 Aligned_cols=178 Identities=16% Similarity=0.147 Sum_probs=109.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHH
Q 004938 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRN------VISWTSMINAFAIHGDARNALIFFNKMKDE-SIDPNGVTFI 455 (722)
Q Consensus 383 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~ 455 (722)
|-...|+.-+. -.+.|++++|.+.|+.+.... ..+.-.++-++.+.+++++|+..+++.... +-.|| .-|.
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~ 110 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYA 110 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHH
Confidence 33445554444 457899999999999997522 234555667788999999999999998874 22333 3444
Q ss_pred HHHHHHHh---c----CCH---HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--H
Q 004938 456 GVLYACSH---A----GLV---DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW--G 523 (722)
Q Consensus 456 ~ll~a~~~---~----g~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~ 523 (722)
..|.+++. . .+. .+|..-|+.++.++ |.+.. ..+|..-+..+. |.... .
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Y--------------a~dA~~~i~~~~---d~LA~~Em 171 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRY--------------APDAKARIVKLN---DALAGHEM 171 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcc--------------hhhHHHHHHHHH---HHHHHHHH
Confidence 44544442 1 222 33444444444432 21111 112222111110 11111 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCCc---hHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDG---ALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 524 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
.+..-|.+.|.+.-|..-++.+++.-|+.+. .+..+..+|...|..++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 2445678899999999999999988776554 455778889999999999998877755
No 258
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.09 E-value=2.5 Score=44.96 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=38.6
Q ss_pred HHhCCChhHHHHHHH-HHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH
Q 004938 193 YFQNGLFDEVLNLFE-EMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDM 271 (722)
Q Consensus 193 ~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 271 (722)
..-+++++++.+..+ .-.-..++ ..-...++..+-+.|..+.|.++-. |+. .-.+...++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHH
Confidence 344566666665554 11111111 2335555555556666665555422 221 12334455555555
Q ss_pred HHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhc
Q 004938 272 AKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQ 309 (722)
Q Consensus 272 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 309 (722)
|.++.++.. +...|..|.....++|+++-|++.|.+
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 555532221 222344444444444444444444433
No 259
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.97 E-value=0.5 Score=41.87 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004938 421 SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477 (722)
Q Consensus 421 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 477 (722)
.++..+...|++++|+.+.+++... -+-|...+..++.++...|+..+|.++|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444444555555555555555552 1223345555555555555555555555544
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.97 E-value=0.53 Score=45.29 Aligned_cols=91 Identities=18% Similarity=0.205 Sum_probs=51.2
Q ss_pred hcCCHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCC
Q 004938 463 HAGLVDEGREIFASMTNEYNIPPK---YEHYGCMVDLFGRANLLREALELVETM----PFAPN-VVIWGSLMAACRVHGE 534 (722)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~ 534 (722)
..|++.+|.+.|...+++| |-+ ...+--|...+...|++++|...|..+ |..|. +..+--|.......|+
T Consensus 153 ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 3444555555555555422 221 223334555555566666655555544 22232 2455556666677778
Q ss_pred HHHHHHHHHHHHccCCCCCch
Q 004938 535 IELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 535 ~~~a~~~~~~~~~~~p~~~~~ 555 (722)
.++|...++++.+..|+.+.+
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHH
Confidence 888888888888877776543
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.84 E-value=0.37 Score=40.34 Aligned_cols=90 Identities=19% Similarity=0.139 Sum_probs=56.3
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-C-CH---HHHHHHHHHHHHcC
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFA-P-NV---VIWGSLMAACRVHG 533 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p-~~---~~~~~ll~~~~~~g 533 (722)
+.+..|+++.|++.|..... -.|.....||.-..+|--+|+.++|++-+++. .+. | .. -.|..-...|+..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45666777777777776664 44455667777777777777777777766665 111 1 11 23333344577788
Q ss_pred CHHHHHHHHHHHHccCCC
Q 004938 534 EIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 534 ~~~~a~~~~~~~~~~~p~ 551 (722)
+.+.|..-|+.+-+++..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888877777666543
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=3.1 Score=40.55 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=27.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHcC
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRR-----NVISWTSMINAFAIHG 430 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 430 (722)
|...-..+...|...|+.++|.+.+-.+.++ |...-..++..+..-|
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 5556666777777777777777666555442 3334444444444444
No 263
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.60 E-value=5.2 Score=41.11 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=21.7
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004938 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC 360 (722)
Q Consensus 328 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 360 (722)
.|+.++|++++..+....-.++..||..+...|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 677777777777755555566666776666554
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.50 E-value=2.9 Score=45.10 Aligned_cols=116 Identities=16% Similarity=0.026 Sum_probs=76.3
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHHcCCHHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP-FA-----PNVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-----p~~~~~~~ll~~~~~~g~~~~ 537 (722)
....+.+.++++.+.++ .|.+....-.-...+...|++++|++.|++.- .+ -....+--+...+....++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677888888888764 33333333333455667888888888888651 01 122334445666777889999
Q ss_pred HHHHHHHHHccCCCCCchHH-HHHHHhhhCCCc-------chHHHHHHHHHh
Q 004938 538 AEFAAKQLLQLDPDHDGALV-LLSNIYAKDKRW-------QDVGELRKSMKE 581 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 581 (722)
|...+.++.+.+.-....|. ..+-.|...|+. ++|.+++++...
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999999987665555554 455566778888 777777776644
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.34 E-value=6.8 Score=37.05 Aligned_cols=199 Identities=13% Similarity=0.127 Sum_probs=99.8
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hHHHHHHHHHHHHcC
Q 004938 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN--VISWTSMINAFAIHG 430 (722)
Q Consensus 353 ~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g 430 (722)
|.-...+|....++++|..-+....+. .+.+...|.+ ...++.|.-+.+++.+-+ +..|+--...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 333444556666777776655554431 1222222211 122344444444444322 224455566777777
Q ss_pred CHHHHHHHHHHHHH--cCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 004938 431 DARNALIFFNKMKD--ESIDPNGV--TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506 (722)
Q Consensus 431 ~~~~A~~~~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 506 (722)
.++-|-..+++.-+ .++.|+.. .|..-+......++...|. +.|......|.+..+++||
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~----------------el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF----------------ELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH----------------HHHHHhhhHhhhhHHhhHH
Confidence 77766666555432 22444432 1222222222222222222 3344455567777777776
Q ss_pred HHHHHhCC-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcc----CCCCCchHHHHHHHhhhCCCcchHHH
Q 004938 507 LELVETMP-------FAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQL----DPDHDGALVLLSNIYAKDKRWQDVGE 574 (722)
Q Consensus 507 ~~~~~~~~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~ 574 (722)
-..+.+-+ --|+. ..+-+.+-.+.-..++..|+..++.--+. .|++..+...|...| ..|+.+++.+
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 66655431 11222 23444444555566788888888775543 456666666777665 4667666665
Q ss_pred HH
Q 004938 575 LR 576 (722)
Q Consensus 575 ~~ 576 (722)
+.
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 54
No 266
>PRK15331 chaperone protein SicA; Provisional
Probab=93.20 E-value=2.7 Score=37.33 Aligned_cols=83 Identities=14% Similarity=0.052 Sum_probs=42.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 004938 427 AIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 505 (722)
.+.|++++|..+|+-+... .| |..-+..|..+|-..+.+++|...|..... -.+.|+..+-.....|...|+.++
T Consensus 48 y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~--l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT--LLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCCCccchHHHHHHHhCCHHH
Confidence 3556666666666555442 22 222344444445555666666666655443 112333334445555556666666
Q ss_pred HHHHHHhC
Q 004938 506 ALELVETM 513 (722)
Q Consensus 506 A~~~~~~~ 513 (722)
|+..|...
T Consensus 124 A~~~f~~a 131 (165)
T PRK15331 124 ARQCFELV 131 (165)
T ss_pred HHHHHHHH
Confidence 66655554
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.20 E-value=9.9 Score=37.90 Aligned_cols=20 Identities=10% Similarity=-0.247 Sum_probs=15.1
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 004938 527 AACRVHGEIELAEFAAKQLL 546 (722)
Q Consensus 527 ~~~~~~g~~~~a~~~~~~~~ 546 (722)
..+.+.++++.|...|+-.+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34667888999998888654
No 268
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.94 E-value=0.44 Score=45.52 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=77.4
Q ss_pred CChHHHHHHhccCC--CCCcchHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC------
Q 004938 65 SSLYYALSIFSQIP--APPSRVSNKFIRAISWS-----HRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE------ 131 (722)
Q Consensus 65 g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------ 131 (722)
..+-.....|...+ .+|..+|-+++..+... +..+-....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 48 K~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nv 127 (406)
T KOG3941|consen 48 KSLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNV 127 (406)
T ss_pred ccccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHH
Confidence 34555667787776 67888999988888653 556666777888999999999999999998775422
Q ss_pred ----------ChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCC
Q 004938 132 ----------GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK 167 (722)
Q Consensus 132 ----------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 167 (722)
.-.-+..++++|...|+.||..+-..|++++++.+-
T Consensus 128 fQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224466778888888888888888888888877654
No 269
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.94 E-value=0.52 Score=42.73 Aligned_cols=89 Identities=18% Similarity=0.145 Sum_probs=68.8
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCC
Q 004938 496 LFGRANLLREALELVETM-PFAPN------VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 568 (722)
-+.+.|++++|..-|.++ ...|. .+.|..-..+..+.+..+.|+.-..++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 345667777777666655 22221 34555556677788999999999999999999888888888999999999
Q ss_pred cchHHHHHHHHHhCCC
Q 004938 569 WQDVGELRKSMKERGI 584 (722)
Q Consensus 569 ~~~a~~~~~~m~~~g~ 584 (722)
+++|.+-++++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999988543
No 270
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.75 E-value=36 Score=43.15 Aligned_cols=64 Identities=8% Similarity=0.030 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 519 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
..+|-.....++..|.++.|....-++.+..+ +..+.-.+......|+-..|..++++..+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 46899999999999999999999888888774 46888999999999999999999999886543
No 271
>PRK09687 putative lyase; Provisional
Probab=92.50 E-value=12 Score=37.18 Aligned_cols=80 Identities=13% Similarity=-0.031 Sum_probs=34.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHG-DARNALIFFNKMKDESIDPNGVTFIGVLYACS 462 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 462 (722)
+..+-...+.++++.|+.+....+..-+..+|...-..-+.++.+.+ ....+...+..+.. .+|...-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 44444455555555554332222233333344433333333443332 12344444444443 334444444555555
Q ss_pred hcCC
Q 004938 463 HAGL 466 (722)
Q Consensus 463 ~~g~ 466 (722)
+.|+
T Consensus 218 ~~~~ 221 (280)
T PRK09687 218 LRKD 221 (280)
T ss_pred ccCC
Confidence 5554
No 272
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.35 E-value=5.5 Score=44.40 Aligned_cols=114 Identities=12% Similarity=0.117 Sum_probs=48.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004938 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472 (722)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 472 (722)
+-+.+.|++++|...|-+...--.. ..+|.-|....+..+-..+++.+.+.|+.-. .--..|+++|.+.++.++-.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHH
Confidence 3344555666655555443220000 1123334444444445555555555554322 222345555555555555544
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
+.+...+ |.- ..-....+..+.+.+-+++|.-+-.+.
T Consensus 453 fI~~~~~--g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 453 FISKCDK--GEW--FFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHhcCCC--cce--eeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 4432221 110 001223344444555555555554444
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.92 E-value=17 Score=37.56 Aligned_cols=149 Identities=10% Similarity=-0.038 Sum_probs=81.9
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh-cCCCCCcch
Q 004938 414 RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP---NGVTFIGVLYACSHAGLVDEGREIFASMTNE-YNIPPKYEH 489 (722)
Q Consensus 414 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 489 (722)
....+|..+...+.+.|+++.|...+.++...+..+ +......-+...-..|+.++|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 445678888888888999999988888887643221 2334444555667778888888888777762 111111111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 004938 490 YGCMVDLFGRANLLREALEL-VETMPFAPNVVIWGSLMAACRVH------GEIELAEFAAKQLLQLDPDHDGALVLLSNI 562 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 562 (722)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+++.++.|+....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000112333333333344 788999999999999999888777777766
Q ss_pred hh
Q 004938 563 YA 564 (722)
Q Consensus 563 ~~ 564 (722)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 54
No 274
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.75 E-value=0.28 Score=30.52 Aligned_cols=32 Identities=25% Similarity=0.214 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
.+|..+...+...|++++|...++++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677778888889999999999999888884
No 275
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.67 E-value=1.4 Score=43.34 Aligned_cols=159 Identities=8% Similarity=-0.003 Sum_probs=118.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH----HHhcCCH
Q 004938 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL----FGRANLL 503 (722)
Q Consensus 428 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~ 503 (722)
-.|+..+|...++++.+. .+.|...+.-.=.+|...|+.+.-...++++.. ...++...|.-+=.+ +..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 578889999999999886 566677777778899999999999999998876 445666555544443 4579999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC----CCchHHHHHHHhhhCCCcchHHHHHH
Q 004938 504 REALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD----HDGALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 504 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
++|++.-++. .+.| |.-.-.++......+|++.++.+..++--..-.+ -...|...+-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999987 5554 4445566666777899999999987765432221 12345567777788899999999999
Q ss_pred HHHhCCCccCCc
Q 004938 578 SMKERGILKERA 589 (722)
Q Consensus 578 ~m~~~g~~~~~~ 589 (722)
.-.-+.+.++-+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 876555555544
No 276
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.56 E-value=23 Score=38.27 Aligned_cols=129 Identities=10% Similarity=0.056 Sum_probs=75.0
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccH-HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 004938 81 PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF-PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159 (722)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 159 (722)
+...|+.+|.---.....+.+..++..++.. -|..+-| .....-=.+.|..+.+.++|++-+. |++-++..|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 3445777766554444555566666666543 2332221 1111222356777777788877665 3556666666665
Q ss_pred HHHHh-CCCHHHHHHHHhcCCC---C---CcccHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 004938 160 GMYGA-CGKILDARLMFDKMSY---R---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS 212 (722)
Q Consensus 160 ~~~~~-~g~~~~A~~~f~~m~~---~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 212 (722)
..... .|+.+..+..|+.... . ...-|-..|.--..++++.....+|++.++-
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 54443 4666677777766542 1 2223777777777777778888888777653
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.30 E-value=0.32 Score=30.87 Aligned_cols=26 Identities=27% Similarity=0.151 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 522 WGSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 522 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
|..|...|...|++++|+.+|+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666777777777666443
No 278
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.22 E-value=0.32 Score=47.66 Aligned_cols=114 Identities=14% Similarity=0.054 Sum_probs=80.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGE 534 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 534 (722)
-.+-|.+.|.+++|+..|...+. -.+-+..++..-..+|.+...+..|+.-.... .+.. -...|.--+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 35568889999999999998775 33448888888999999999998887666554 2211 12344444555556789
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHH
Q 004938 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELR 576 (722)
Q Consensus 535 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 576 (722)
.++|.+-++.+++++|++. -|-..|.......++.-+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIAT 218 (536)
T ss_pred HHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHh
Confidence 9999999999999999965 3444455555555554443
No 279
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=90.74 E-value=25 Score=37.17 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=69.0
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH---HhcCCHHHHHHHHHhC--CCCCCHH
Q 004938 447 IDPNGVTF-IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF---GRANLLREALELVETM--PFAPNVV 520 (722)
Q Consensus 447 ~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~--~~~p~~~ 520 (722)
..|+..|+ +.++.-+.+.|-+.+|...+..+.. .-||+...|..+|..= ..+| +..+.++++.| .+..|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 46666665 3456666777888888888888775 5566777777777643 2344 77777777777 3336777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc-cCCC
Q 004938 521 IWGSLMAACRVHGEIELAEFAAKQLLQ-LDPD 551 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~ 551 (722)
.|...+.--..+|..+.+-.++.++++ ++|.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 787777776777777777777766654 4444
No 280
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.62 E-value=10 Score=35.22 Aligned_cols=159 Identities=13% Similarity=0.074 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
..||-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++.-.|++.-|.+=|...-+ -.|+. .|.+|.-
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~D-PfR~LWL 173 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPND-PFRSLWL 173 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHh---cCCCC-hHHHHHH
Confidence 4566666666777777777777777666 3443 12222222234456666666655554433 12221 1222221
Q ss_pred -HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-------CchHHHHHHHhhhCC
Q 004938 496 -LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH-------DGALVLLSNIYAKDK 567 (722)
Q Consensus 496 -~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 567 (722)
.-.+.-+..+|..-+.+--...|..-|+..+-.+.--.--+ +.+++++.+-..++ ..+|.-|+.-|...|
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 11233345555544433211335555655544432211111 12333333322222 257888999999999
Q ss_pred CcchHHHHHHHHHhCC
Q 004938 568 RWQDVGELRKSMKERG 583 (722)
Q Consensus 568 ~~~~a~~~~~~m~~~g 583 (722)
..++|..+|+.....+
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999876644
No 281
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.58 E-value=9.8 Score=32.32 Aligned_cols=81 Identities=15% Similarity=0.258 Sum_probs=47.1
Q ss_pred cCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004938 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477 (722)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 477 (722)
||++......+-.+. .+......-++.+...|+-+.-.+++.++... -+|+......+..||.+.|+..++.+++..+
T Consensus 69 C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 69 CGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444444443333322 22334455566777888888888888877652 3677777788888888888888888888887
Q ss_pred Hhh
Q 004938 478 TNE 480 (722)
Q Consensus 478 ~~~ 480 (722)
-++
T Consensus 147 Cek 149 (161)
T PF09205_consen 147 CEK 149 (161)
T ss_dssp HHT
T ss_pred HHh
Confidence 763
No 282
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.57 E-value=8.4 Score=38.60 Aligned_cols=132 Identities=13% Similarity=0.186 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHHh--c----CChHHHHHHHHHHHHhCC---CCchhhHHHHHHHHHhCCCHH
Q 004938 99 KHALKVFLKMLNEGLTIDRFSFPPILKAIAR--A----EGLLEGMQVHGLGTKLGF---GSDPFVQTGLVGMYGACGKIL 169 (722)
Q Consensus 99 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~ 169 (722)
.+.+++++.|.+.|++-+.++|.+..-.... . .....++.+|+.|.+... .++...+..|+.. ...+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4456677888888888777776654433332 1 134556667777766542 3333444444332 112111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh--HHHHHHHHHHccCC--hHHHHHHHHHHH
Q 004938 170 DARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM--VLSKILSACSRAGN--LSYGEAVHEFII 245 (722)
Q Consensus 170 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~--~~~a~~~~~~~~ 245 (722)
. + .+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+..+++.+.
T Consensus 157 ~---l------------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~ 209 (297)
T PF13170_consen 157 E---L------------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK 209 (297)
T ss_pred H---H------------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 1 1 134455556665555554322 23333333322222 235566666666
Q ss_pred HcCCCCCHhHHHHH
Q 004938 246 DNNVALDAHLQSTL 259 (722)
Q Consensus 246 ~~g~~~~~~~~~~l 259 (722)
+.|+++....|..+
T Consensus 210 ~~~~kik~~~yp~l 223 (297)
T PF13170_consen 210 KNGVKIKYMHYPTL 223 (297)
T ss_pred HcCCccccccccHH
Confidence 66666655555443
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.17 E-value=14 Score=33.30 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=21.3
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHccCChHH
Q 004938 204 NLFEEMKMSNVEPDEMVLSKILSACSRAGNLSY 236 (722)
Q Consensus 204 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 236 (722)
+.++.+.+.|+.|+...+..++..+.+.|.+..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 445555566677777777777777777766543
No 284
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.05 E-value=19 Score=37.25 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC----CCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD----HDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 518 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
...+|..+...+++.|+++.|...+.++...++. .+.....-+......|+..+|...++...+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999886522 45667778899999999999999998887733
No 285
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.92 E-value=10 Score=35.74 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=34.3
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 492 CMVDLFGRA-NLLREALELVETM-----PFAPNVVIWGSLMAA---CRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 492 ~li~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
.+.+.|... .++++|+..++.. +-+.+...-..++.. -...+++.+|+.+|+++....-+++
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 344444433 5556666666655 112222222233332 3457889999999999887655554
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.87 E-value=0.48 Score=30.09 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.4
Q ss_pred hHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 555 ALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 555 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
++..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999854
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.55 E-value=12 Score=33.30 Aligned_cols=89 Identities=18% Similarity=0.094 Sum_probs=53.4
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~ 537 (722)
.-...++.+++..+++.+.- +.|. .+.-..-...+.+.|++.+|+.+|+++ .-.|....-..|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 34456677777777777653 3443 333334455567788888888888887 233444445566666665444444
Q ss_pred HHHHHHHHHccCCC
Q 004938 538 AEFAAKQLLQLDPD 551 (722)
Q Consensus 538 a~~~~~~~~~~~p~ 551 (722)
=....+++++.+|+
T Consensus 96 Wr~~A~evle~~~d 109 (160)
T PF09613_consen 96 WRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHhcCCC
Confidence 44555666666654
No 288
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.40 E-value=51 Score=38.81 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=12.6
Q ss_pred HHHHHHHHHhCC--CHHHHHHHHhcC
Q 004938 155 QTGLVGMYGACG--KILDARLMFDKM 178 (722)
Q Consensus 155 ~~~li~~~~~~g--~~~~A~~~f~~m 178 (722)
.-.+|..|.+.+ .++.|+....+.
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l 818 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKEL 818 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 345556666655 455555544443
No 289
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.37 E-value=0.13 Score=45.53 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=19.3
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 004938 230 RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLF 276 (722)
Q Consensus 230 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 276 (722)
+.+.++....+++.+.+.+...+....+.++..|++.+..++..+++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 33344444444444444333334444444444444444444444443
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.99 E-value=2.9 Score=40.96 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKD-----ESIDPNGVTFIG 456 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 456 (722)
..++..++..+..+|+.+.+.+.++++.. -+...|..++.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34567788899999999999999998875 4667999999999999999999999998765 577777665544
Q ss_pred HHHH
Q 004938 457 VLYA 460 (722)
Q Consensus 457 ll~a 460 (722)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 291
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.90 E-value=22 Score=33.86 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=9.7
Q ss_pred HHHHHHhcCCHHHHHHHHHh
Q 004938 391 IIDMYAKCGSLESAREVFER 410 (722)
Q Consensus 391 li~~~~~~g~~~~A~~~~~~ 410 (722)
.|-.|.-..++..|.+.++.
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcc
Confidence 33334444455555555554
No 292
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.39 E-value=7.7 Score=34.62 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=49.2
Q ss_pred hCCCHHHHHHHHhcCCCCCcccHHHHH-----HHHHhCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHH--HHccCChH
Q 004938 164 ACGKILDARLMFDKMSYRDIVPWSVMI-----DGYFQNGLFDEVLNLFEEMKMSNVEPDEM-VLSKILSA--CSRAGNLS 235 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~--~~~~g~~~ 235 (722)
..+..++|+.-|..+..-+.-+|-.|. ....+.|+...|+..|++.-...-.|-.. -...|=.+ +...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 334455555555555444444443332 23344555555555555554332223222 11111111 22344444
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhc
Q 004938 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279 (722)
Q Consensus 236 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 279 (722)
......+-+-..+-+.-...-.+|.-+-.|.|++.+|.+.|..+
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 44443333333332333333444444555555555555555444
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.21 E-value=19 Score=32.38 Aligned_cols=133 Identities=11% Similarity=0.107 Sum_probs=86.9
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcC--CHHHHHHHHhccCCCCcc
Q 004938 239 AVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG--QVEDARLIFDQMVEKDLI 316 (722)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~~~~~~~~ 316 (722)
+....+.+.+++++...+..+++.+.+.|++..-..++.--.-+|.......+-.+.... -..-|.+.+.++. .
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----T 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----h
Confidence 445556678899999999999999999999998888876655555444443333222211 1334455555544 2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHc
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~ 379 (722)
.+..++..+...|++-+|+++.+.... .+......++.+..+.++...--.+++...+.
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466677888899999999998877532 22233455666766677666666666655543
No 294
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.14 E-value=26 Score=33.76 Aligned_cols=218 Identities=11% Similarity=0.186 Sum_probs=117.0
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh---CCCC--CChhhHHHHHHHHHccCCchHHHHHHHHHHHc-----CCCCChhHHH
Q 004938 320 AMISGYAENNHPQEALKLFNEMQV---CGMK--PDKVTMLSVISACAHLGVLDQAQRIHLYIDKN-----AFGGDLRVNN 389 (722)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-----~~~~~~~~~~ 389 (722)
.+|..+.+.|++++.+..|.+|+. ..+. -+..+.++++.-.+...+.+.-..+++.-++. +-..-..+-+
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 345555666666666666665532 1111 12345566665555555555555555433221 1111122334
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--------C-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004938 390 AIIDMYAKCGSLESAREVFERMRR--------R-------NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 454 (722)
.|...|...|++..-.+++.++.. . =...|..-|..|....+-.....+|++.+.-.-.......
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 566777777777777777776642 1 1246777788888888877778888877653222222334
Q ss_pred HHHHHHHH-----hcCCHHHHHHHHHHhHhhcCCCCCcc-----hHHHHHHHHHhcCCHHHHHHHHHh--C-CC--CCCH
Q 004938 455 IGVLYACS-----HAGLVDEGREIFASMTNEYNIPPKYE-----HYGCMVDLFGRANLLREALELVET--M-PF--APNV 519 (722)
Q Consensus 455 ~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~--~-~~--~p~~ 519 (722)
..+++-|. +.|.+++|..-|-++.+.|.-.-++. -|-.|.+++.+.|- .-|+. + |. .|..
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEI 304 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEI 304 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHH
Confidence 45555553 56888887755544444343322222 24556667766651 11111 1 33 3445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAK 543 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~ 543 (722)
.....|+.+|..+ ++.+-+++++
T Consensus 305 lAMTnlv~aYQ~N-dI~eFE~Il~ 327 (440)
T KOG1464|consen 305 LAMTNLVAAYQNN-DIIEFERILK 327 (440)
T ss_pred HHHHHHHHHHhcc-cHHHHHHHHH
Confidence 6778888888654 4444444433
No 295
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.81 E-value=50 Score=36.71 Aligned_cols=246 Identities=11% Similarity=0.074 Sum_probs=114.1
Q ss_pred hcCCchHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHccC-----CchHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 004938 327 ENNHPQEALKLFNEMQV-------CGMKPDKVTMLSVISACAHLG-----VLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394 (722)
Q Consensus 327 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~g-----~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 394 (722)
...+.+.|+.+|+.+.+ .| +......+..+|.+.. +.+.|..++....+.|. |+....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 34455555555555544 33 2223344444444432 34446666666555552 222222111111
Q ss_pred HHh-cCCHHHHHHHHHhcCC-CChHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004938 395 YAK-CGSLESAREVFERMRR-RNVISWTSMINAFA----IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468 (722)
Q Consensus 395 ~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 468 (722)
... ..+...|.+.|....+ -.+.+.-.+...|. ...+...|..++++..+.| .|-..--...+..+.. +.++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 111 1245566666665543 22222222222221 2235666777777666665 3332222222233333 4444
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHH-----Hh--cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 004938 469 EGREIFASMTNEYNIPPKYEHYGCMVDLF-----GR--ANLLREALELVETMPFAPNVVIWGSLMAACRV----HGEIEL 537 (722)
Q Consensus 469 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~-----~~--~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~ 537 (722)
.+.-.+..+.. .+.+.....-..+.+.. .+ ....+.+..++.+....-+......|...|.. ..+.+.
T Consensus 415 ~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 415 TALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHH
Confidence 44444444333 12221111111111111 01 22455566666666444455555555554433 236788
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHhhhC-C--CcchHHHHHHHHHhC
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKD-K--RWQDVGELRKSMKER 582 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~m~~~ 582 (722)
|...|.++.+.. .....+++.++..- | .+..|.++++...+.
T Consensus 494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 888888877666 55667777776542 1 257777777776654
No 296
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.74 E-value=38 Score=34.23 Aligned_cols=162 Identities=12% Similarity=0.035 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHh-CCCCC---ChhhHHHHHHHHHccCCchHHHHHHHHHHHcC-----CCCChhH
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQV-CGMKP---DKVTMLSVISACAHLGVLDQAQRIHLYIDKNA-----FGGDLRV 387 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p---~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~-----~~~~~~~ 387 (722)
+|-.+..++-+..++.+++.+-.--.. .|..| -.....++..+....+.++++.+.|+.+.+.. -.....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344455555555555555554333221 12222 11223345556666667777777777665421 1123567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-------CChH------HHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRR-------RNVI------SWTSMINAFAIHGDARNALIFFNKMKD----ESIDPN 450 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~ 450 (722)
+.+|...|.+..++++|.-+..+..+ .|.. +.-.|.-++...|....|.+.-++..+ .|-+|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77788888888777776654433221 2221 222334456666766666666665433 332222
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004938 451 G-VTFIGVLYACSHAGLVDEGREIFASMT 478 (722)
Q Consensus 451 ~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 478 (722)
. .....+...|...|+.+.|+.-|+.+.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1 234445556666777777666665543
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.72 E-value=1.6 Score=26.99 Aligned_cols=32 Identities=25% Similarity=0.521 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 450 (722)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566777777777777777777777776 3443
No 298
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.72 E-value=2.3 Score=28.37 Aligned_cols=32 Identities=19% Similarity=0.431 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 451 (722)
+|..+...|...|++++|+++|++.++. .|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 4556666666677777777777766663 4543
No 299
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.63 E-value=36 Score=33.88 Aligned_cols=23 Identities=13% Similarity=-0.045 Sum_probs=17.5
Q ss_pred HHHHHhhhCCCcchHHHHHHHHH
Q 004938 558 LLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 558 ~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
.-+....+.++|++|.+.++...
T Consensus 251 ~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 251 NKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH
Confidence 44666778899999999887543
No 300
>PRK09687 putative lyase; Provisional
Probab=86.39 E-value=37 Score=33.79 Aligned_cols=118 Identities=11% Similarity=0.083 Sum_probs=46.5
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCCHhHHHHHH
Q 004938 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLF----DEVLNLFEEMKMSNVEPDEMVLSKIL 225 (722)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll 225 (722)
+|..+....+..+...|..+-...+..-+..+|...-...+.++.+-|+. .+++..+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444444444444322222222222233444444444555555542 3455555554222 23444444444
Q ss_pred HHHHccCChHH--HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 004938 226 SACSRAGNLSY--GEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269 (722)
Q Consensus 226 ~~~~~~g~~~~--a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 269 (722)
.++...+.... ...+...+...-..++..+-...+.++.+.|+.
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE 158 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH
Confidence 44443321110 011112221211233555555555556555553
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.85 E-value=3.8 Score=36.26 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=30.6
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..++.+.++.++.-+.-+.|+.+..-..-+.++...|+|.+|..+++.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4455666666666666666665555555555666666666666666665444
No 302
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.80 E-value=32 Score=32.53 Aligned_cols=90 Identities=13% Similarity=0.282 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHhHhhcCCC-CCcchHHHHHH---HHHhcCCHHHHHHHHHhC---CCCCCHHHHHH---HHHH--HHH-
Q 004938 465 GLVDEGREIFASMTNEYNIP-PKYEHYGCMVD---LFGRANLLREALELVETM---PFAPNVVIWGS---LMAA--CRV- 531 (722)
Q Consensus 465 g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~---~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---ll~~--~~~- 531 (722)
.++++|+..|+..-+-|... .+...-.|++. .-+..+++.+|+++|++. ....+..-|.. ++.+ |.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 45566666666655432222 22222223333 335678899999998887 23333333422 2222 332
Q ss_pred cCCHHHHHHHHHHHHccCCCCCc
Q 004938 532 HGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
..+.-.+...+++..+++|.-..
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccc
Confidence 36777788899999999997544
No 303
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.67 E-value=69 Score=36.18 Aligned_cols=150 Identities=15% Similarity=0.056 Sum_probs=71.3
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchh-----hHHHHHHHHHhCCCHHHHHHHHhcCCC----CCcccHHHH-----HHHHH
Q 004938 129 RAEGLLEGMQVHGLGTKLGFGSDPF-----VQTGLVGMYGACGKILDARLMFDKMSY----RDIVPWSVM-----IDGYF 194 (722)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~l-----i~~~~ 194 (722)
...+++.|+..+++.....-.++.. ....++..|.+.+... |.+..++..+ .....|... +..+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 4456666666666543332121111 1223445555554444 6655554321 111222222 22222
Q ss_pred hCCChhHHHHHHHHHHHCC---CCCCHhHHHHHHHHHH--ccCChHHHHHHHHHHHHcCC---------CCCHhHHHHHH
Q 004938 195 QNGLFDEVLNLFEEMKMSN---VEPDEMVLSKILSACS--RAGNLSYGEAVHEFIIDNNV---------ALDAHLQSTLI 260 (722)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~~~~~g~---------~~~~~~~~~li 260 (722)
..+++..|++.++.....- ..|-...+..++.+.. ..+..+.+.+....+..... .|...++..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 3367777888777764322 2333444455555543 33545555555555533211 23445566665
Q ss_pred HHH--HhcCChHHHHHHHHhc
Q 004938 261 TMY--ANCGCMDMAKGLFDKV 279 (722)
Q Consensus 261 ~~~--~~~g~~~~A~~~~~~~ 279 (722)
+.+ ...|+++.+...++++
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 544 4566766666665554
No 304
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.57 E-value=3 Score=41.23 Aligned_cols=86 Identities=19% Similarity=0.141 Sum_probs=61.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC
Q 004938 423 INAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN 501 (722)
Q Consensus 423 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 501 (722)
.+-|.++|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|..=...+.. .-...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 5779999999999999998877 567 889999999999999888877766665543 1123456666655
Q ss_pred C-------HHHHHHHHHhC-CCCCCH
Q 004938 502 L-------LREALELVETM-PFAPNV 519 (722)
Q Consensus 502 ~-------~~~A~~~~~~~-~~~p~~ 519 (722)
. ..||.+-++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 4 44444444443 466763
No 305
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.22 E-value=31 Score=31.75 Aligned_cols=91 Identities=14% Similarity=0.074 Sum_probs=62.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHH-----HHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHH
Q 004938 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGC-----MVDLFGRANLLREALELVETMPFAP-NVVIWGSLMAACRV 531 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~ 531 (722)
...+...+++++|...++.... .|..+.+.. |.......|.+++|+..++...-+. ....-..-.+++..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 3467778888888888876653 133334443 3455677899999999998763111 12223344567889
Q ss_pred cCCHHHHHHHHHHHHccCCCC
Q 004938 532 HGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~p~~ 552 (722)
.|+-++|+..|+++++.++++
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 172 KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cCchHHHHHHHHHHHHccCCh
Confidence 999999999999999887543
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.96 E-value=4.4 Score=35.26 Aligned_cols=54 Identities=7% Similarity=0.028 Sum_probs=42.9
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
..++.+.++.++..+.-+.|+.+..-..-+.++...|+|.||.++++.+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 477888888888888888888887777778888888888888888888776653
No 307
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.50 E-value=9.2 Score=37.60 Aligned_cols=97 Identities=10% Similarity=0.179 Sum_probs=72.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 004938 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-R--------NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN 450 (722)
Q Consensus 380 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 450 (722)
|.+....+...++..-....+++++...+-++.. + ...+|-.++.. -++++++.++..=+.-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccc
Confidence 4445555566666666667788888887777653 2 23444444433 367799999988889999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 004938 451 GVTFIGVLYACSHAGLVDEGREIFASMTNE 480 (722)
Q Consensus 451 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 480 (722)
..++..++..+.+.+++.+|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999998887777653
No 308
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.40 E-value=61 Score=34.49 Aligned_cols=167 Identities=11% Similarity=0.085 Sum_probs=103.4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004938 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459 (722)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 459 (722)
..|....-++++.++..-.++-.+.+..+|.. .+-..|-.++..|..+ ..+.-..+|+++.+ ..-|.+.+..-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHH
Confidence 34445556677777777777777777777764 5566777888888877 55677788888777 3455555555555
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCC------cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPK------YEHYGCMVDLFGRANLLREALELVETM----PFAPNVVIWGSLMAAC 529 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~ 529 (722)
-+...++.+.+..+|..+..+ +-|. .+.|..|+..- ..+.+..+.+..++ +...-.+.+.-+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555557788888888877753 3331 12344444322 23444445554444 2222344555555666
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCCch
Q 004938 530 RVHGEIELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~p~~~~~ 555 (722)
....|+++|++++..+++.+..+.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhH
Confidence 77778888888888887776655433
No 309
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.16 E-value=45 Score=33.49 Aligned_cols=117 Identities=11% Similarity=0.170 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCCH
Q 004938 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSH--A----GLVDEGREIFASMTNEYNIPPK--YEHYGCMVDLFGRANLL 503 (722)
Q Consensus 432 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~----g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~ 503 (722)
.++.+.+++.|.+.|++-+..+|.+....... . .....+..+|+.|++++.+-.. ...+..|+.. +.+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556788889999999888777664433332 2 2356788999999997765433 3344444322 44443
Q ss_pred HH----HHHHHHhC---CCCC-CHHHHHHHHHHHHHc-CC--HHHHHHHHHHHHccCC
Q 004938 504 RE----ALELVETM---PFAP-NVVIWGSLMAACRVH-GE--IELAEFAAKQLLQLDP 550 (722)
Q Consensus 504 ~~----A~~~~~~~---~~~p-~~~~~~~ll~~~~~~-g~--~~~a~~~~~~~~~~~p 550 (722)
++ ++.+++.+ ++.. |..-+.+-+-++... .+ +.++..+++.+.+.+-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ 213 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGV 213 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence 33 33344333 4443 333333333333221 11 4466666776666543
No 310
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.12 E-value=31 Score=30.97 Aligned_cols=122 Identities=15% Similarity=0.107 Sum_probs=79.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHH--HHHHHhcCC
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM--VDLFGRANL 502 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~ 502 (722)
+++.+..++|+.-|.++.+.|...-.+ ............|+...|...|+++-.+..+|.-..-..-| .-++...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356777888888888888776543322 22333445677888888888888887653333222111222 223456888
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 503 LREALELVETMPFAPN---VVIWGSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 503 ~~~A~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
+++...-++.+..+.+ ...-..|.-+-.+.|++..|...|+++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888888877732222 23456677777889999999999998876
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.79 E-value=21 Score=32.67 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRRRN------VISWTSMINAFAIHGDARNALIFFNKM 442 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m 442 (722)
+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444455555555555555555444321 123333444444444444444444433
No 312
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.78 E-value=4.5 Score=39.68 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.++..++..+...|+++.+...++++++.+|-+...|..+..+|.+.|+...|+..++.+.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345556667777778888888888888888888788888888888888888888888877653
No 313
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.75 E-value=59 Score=36.61 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCC---CCCcccHHHHHHHHHhC
Q 004938 157 GLVGMYGACGKILDARLMFDKMS---YRDIVPWSVMIDGYFQN 196 (722)
Q Consensus 157 ~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~ 196 (722)
++|-.+.|+|++++|.++..+.. .+....+-..+..|+.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 45566667777777777773322 22334455555665554
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.44 E-value=25 Score=30.70 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=22.2
Q ss_pred HHHhCCCHHHHHHHHhcCCCCC-cccHHHHHHHHHhCCChhHHH
Q 004938 161 MYGACGKILDARLMFDKMSYRD-IVPWSVMIDGYFQNGLFDEVL 203 (722)
Q Consensus 161 ~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~ 203 (722)
.+...|++++|.++|+++.+.. ..+|..-+.++|-.-.-+..+
T Consensus 53 l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 53 LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH
Confidence 3445666666666666666543 224554444444443333333
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.42 E-value=2.6 Score=27.39 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
.+++.|...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666666654
No 316
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.40 E-value=2 Score=26.19 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=18.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 525 LMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 525 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
+...+...|+.++|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445566667777777777777776665
No 317
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.32 E-value=48 Score=32.51 Aligned_cols=59 Identities=19% Similarity=0.013 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 523 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
+.....|...|.+.+|..+.++++.++|-+...+..|..+|+..|+--.|.+-++.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33445788999999999999999999999999999999999999999999988888854
No 318
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.19 E-value=87 Score=35.37 Aligned_cols=195 Identities=11% Similarity=0.041 Sum_probs=107.1
Q ss_pred CCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCCCCcchHHHHHHHHH-hCCCchHHHHHHHHHHHCCCCCCcc----
Q 004938 44 SQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAIS-WSHRPKHALKVFLKMLNEGLTIDRF---- 118 (722)
Q Consensus 44 ~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~---- 118 (722)
+....-|..||.+-.+ | ++.+.+-+.-.|.....++-.+...+. ...++++|...+++....--+++-.
T Consensus 27 ~~~l~~Y~kLI~~ai~--C----L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~ 100 (608)
T PF10345_consen 27 EEQLKQYYKLIATAIK--C----LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKF 100 (608)
T ss_pred hhhHHHHHHHHHHHHH--H----HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 4566777788876555 4 333332222122234455666666665 6778999999998775433222221
Q ss_pred -cHHHHHHHHHhcCChHHHHHHHHHHHHhC----CCCchhhHHHH-HHHHHhCCCHHHHHHHHhcCCC-----CCc--cc
Q 004938 119 -SFPPILKAIARAEGLLEGMQVHGLGTKLG----FGSDPFVQTGL-VGMYGACGKILDARLMFDKMSY-----RDI--VP 185 (722)
Q Consensus 119 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~m~~-----~~~--~~ 185 (722)
.-..+++.+.+.+... |+...+..++.- ..+-...+.-+ +..+...++...|.+.++.+.. .|. ..
T Consensus 101 ~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 101 RCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred HHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 1123345455555444 888877766542 12223333333 3333334788889888877642 122 22
Q ss_pred HHHHHHHH--HhCCChhHHHHHHHHHHHCCC---------CCCHhHHHHHHHHHH--ccCChHHHHHHHHHHH
Q 004938 186 WSVMIDGY--FQNGLFDEVLNLFEEMKMSNV---------EPDEMVLSKILSACS--RAGNLSYGEAVHEFII 245 (722)
Q Consensus 186 ~~~li~~~--~~~g~~~~A~~~~~~m~~~g~---------~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~~~ 245 (722)
.-.++.+. .+.+..+++++.++++..... .|-..+|..++..++ ..|+++.+.+.+..+.
T Consensus 180 ~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 180 LASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333 345667788888877733221 345567777777665 5577667666655543
No 319
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.80 E-value=17 Score=29.13 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=38.8
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHH
Q 004938 292 SGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTML 354 (722)
Q Consensus 292 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 354 (722)
..+...|++++|..+.+.+.-||...|-+|.. .+.|..+++...+.+|..+| .|...+|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34555666667766677777777777766654 35666676777777777666 45444443
No 320
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.77 E-value=13 Score=33.98 Aligned_cols=97 Identities=13% Similarity=0.143 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHH--H
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV--TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG--C 492 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~ 492 (722)
..+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+.....++..-.....|...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 466778888999999999999999988876566554 577788888888999888888877765211111111111 1
Q ss_pred HHH--HHHhcCCHHHHHHHHHhC
Q 004938 493 MVD--LFGRANLLREALELVETM 513 (722)
Q Consensus 493 li~--~~~~~g~~~~A~~~~~~~ 513 (722)
... .+...|++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 111 224578899988888776
No 321
>PRK10941 hypothetical protein; Provisional
Probab=82.44 E-value=5.4 Score=39.24 Aligned_cols=62 Identities=26% Similarity=0.165 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..+.|-.+|.+.++++.|..+.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 45677778999999999999999999999999988888999999999999999988888764
No 322
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.32 E-value=18 Score=29.10 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=45.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004938 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456 (722)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 456 (722)
..+...|++++|..+.+.+.-||...|-++-.. +.|..+++..-+.+|...| .|....|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 456678999999999998888999999887653 6677777777777777765 555555543
No 323
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.96 E-value=3.4 Score=25.31 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666777777777777777665
No 324
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.49 E-value=3.4 Score=24.21 Aligned_cols=31 Identities=26% Similarity=0.187 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
.|..+...+...|+++.|...+++.++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666677777777777777777777664
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.18 E-value=3.4 Score=28.97 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCCchH
Q 004938 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 524 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
.+.-++.+.|++++|....+.+++.+|++..+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 355678999999999999999999999986443
No 326
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.86 E-value=33 Score=33.06 Aligned_cols=176 Identities=8% Similarity=0.101 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHhcCC----C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCC--CCHHHHHHHHHHHHhcCC
Q 004938 399 GSLESAREVFERMRR----R---NVISWTSMINAFAIHGDARNALIFFNKMKD---ESID--PNGVTFIGVLYACSHAGL 466 (722)
Q Consensus 399 g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~a~~~~g~ 466 (722)
.++++|..-|++..+ + .......||..+.+.|++++.++.|.+|.. ..+. -+..+.++++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456677777766543 1 223455667777788888888888877754 1122 234466777776666655
Q ss_pred HHHHHHHHHHhHhhcC----CCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CC-----CCC-------HHHHHHHHHH
Q 004938 467 VDEGREIFASMTNEYN----IPPKYEHYGCMVDLFGRANLLREALELVETM--PF-----APN-------VVIWGSLMAA 528 (722)
Q Consensus 467 ~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~-----~p~-------~~~~~~ll~~ 528 (722)
.+--.++++.-..... -..-..+-..|...|...|.+.+-.++++++ .. ..| ..+|..-+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 5555555443332111 1112233356777777777777777777665 00 111 2355555666
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCCchH-HHH-----HHHhhhCCCcchHHH
Q 004938 529 CRVHGEIELAEFAAKQLLQLDPDHDGAL-VLL-----SNIYAKDKRWQDVGE 574 (722)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~-~~l-----~~~~~~~g~~~~a~~ 574 (722)
|-.+++-..-..+|++++....--|... ... +.+..+.|.|++|..
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 7777777888888888876543222111 111 234456677887764
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.65 E-value=24 Score=36.91 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=75.9
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 004938 424 NAFAIHGDARNALI-FFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502 (722)
Q Consensus 424 ~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 502 (722)
.--...|+...|-+ ++.-+....-.|+.+-..+.+ ..+.|+++.+.+.+..... -+.....+..+++....+.|+
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhh
Confidence 33345667665544 444444443455554444433 5677888888777776654 344555666777777777788
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 503 LREALELVETM-PFA-PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 503 ~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
+++|..+-..| +.+ -++.+...........|-++++.-.+++++.++|....
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 88887777766 211 13333333344455667777777777777777765443
No 328
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.50 E-value=1.2 Score=39.27 Aligned_cols=84 Identities=13% Similarity=0.131 Sum_probs=55.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHH
Q 004938 123 ILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEV 202 (722)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 202 (722)
+++.+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .....++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777777777766566777888888888888777777777763322 3345566666666766666
Q ss_pred HHHHHHH
Q 004938 203 LNLFEEM 209 (722)
Q Consensus 203 ~~~~~~m 209 (722)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6666654
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.89 E-value=13 Score=38.65 Aligned_cols=132 Identities=15% Similarity=0.141 Sum_probs=84.1
Q ss_pred HHHHHhcCCHHHHH-HHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004938 392 IDMYAKCGSLESAR-EVFERMRR----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL 466 (722)
Q Consensus 392 i~~~~~~g~~~~A~-~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 466 (722)
|.--...|++-.|. ++|.-+.. |+.+...+.| +...|+++.+...+...... +.....+...++......|.
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 33344567776664 55555542 4544444444 45679999999888766543 44556788889999999999
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 004938 467 VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFA-PNVVIWGSLMAA 528 (722)
Q Consensus 467 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~ 528 (722)
+++|...-..|..+ .+ .+.+....-.-.--..|.++++.-.|++. .+. |...-|-..++.
T Consensus 373 ~~~a~s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 373 WREALSTAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHHHHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 99999998888763 22 23333322222334568889999999887 333 344556555554
No 330
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.88 E-value=16 Score=33.58 Aligned_cols=63 Identities=17% Similarity=0.099 Sum_probs=39.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch
Q 004938 493 MVDLFGRANLLREALELVETM-PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 555 (722)
-..++.+.+.++.|++-..+. .+.|.. ....--..+|-+...++.|+.-|+++++.+|....+
T Consensus 140 raaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 140 RAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 334455566666666555444 444432 222223446777788999999999999999976533
No 331
>PRK11619 lytic murein transglycosylase; Provisional
Probab=79.59 E-value=1.2e+02 Score=34.48 Aligned_cols=331 Identities=12% Similarity=0.051 Sum_probs=155.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCCh
Q 004938 191 DGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNN-VALDAHLQSTLITMYANCGCM 269 (722)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~ 269 (722)
....+.|++..+.++...+....+ ..-..|..+..... ....+ ++-..+.+.. .+.....-..-+..+.+.+++
T Consensus 41 ~~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w 115 (644)
T PRK11619 41 KQAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAV---QVTNFIRANPTLPPARSLQSRFVNELARREDW 115 (644)
T ss_pred HHHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccCH
Confidence 345566777777777766643322 12222333222211 11222 3333333322 222333344444555566666
Q ss_pred HHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 004938 270 DMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV---EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGM 346 (722)
Q Consensus 270 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 346 (722)
....+.+.. ...+...--....+....|+.++|......+- .......+.++..+.+.|...... ++.+|.
T Consensus 116 ~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~---- 189 (644)
T PRK11619 116 RGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-YLERIR---- 189 (644)
T ss_pred HHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-HHHHHH----
Confidence 666663222 22233333445555556666555544444431 112334444444444444433222 111111
Q ss_pred CCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHH
Q 004938 347 KPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGD-LRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINA 425 (722)
Q Consensus 347 ~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 425 (722)
.....|+...|..+...+ .++ ......++..+. +...+...+.... ++...-...+.+
T Consensus 190 ------------~al~~~~~~lA~~l~~~l-----~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~ 248 (644)
T PRK11619 190 ------------LAMKAGNTGLVTYLAKQL-----PADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVA 248 (644)
T ss_pred ------------HHHHCCCHHHHHHHHHhc-----ChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHH
Confidence 112334444444444333 111 122333333332 2333333333321 222111111112
Q ss_pred H--HHcCCHHHHHHHHHHHHHc-CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc
Q 004938 426 F--AIHGDARNALIFFNKMKDE-SIDPNGV--TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA 500 (722)
Q Consensus 426 ~--~~~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 500 (722)
+ ....+.+.|..++.+.... ++.+... ....+.......+..+++...++..... ..+.....--+..-.+.
T Consensus 249 l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 249 FASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGT 325 (644)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHc
Confidence 2 1345678899999887553 3333332 3334433333433356777777765431 12444455555555689
Q ss_pred CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 501 NLLREALELVETMPF--APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 501 g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
++++.+...+..|+. .-...-.-=+..+....|+.++|...|+++.. + ...|-.|+
T Consensus 326 ~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 326 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred cCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 999999999999842 11122122255666678999999999999843 2 23555554
No 332
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.18 E-value=12 Score=36.81 Aligned_cols=101 Identities=12% Similarity=0.105 Sum_probs=63.6
Q ss_pred CCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCC-CCc-----ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhH
Q 004938 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY-RDI-----VPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV 220 (722)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 220 (722)
|.+....+...++..-....+++++...+-++.. ++. .+-.+.++-+. .-++++++.++..=.+-|+-||.+|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 4444555555666665656677777776655542 111 11222333322 2356677777777777888888888
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcC
Q 004938 221 LSKILSACSRAGNLSYGEAVHEFIIDNN 248 (722)
Q Consensus 221 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g 248 (722)
++.+|..+.+.+++..|.++.-.|+...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888887777776666543
No 333
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.96 E-value=13 Score=29.61 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 431 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
+.-++.+-++.+....+.|+.....+.+.||.+.+++.-|.++|+.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3446666777777777899999999999999999999999999998876433 24445665543
No 334
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.96 E-value=11 Score=30.39 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 434 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
+..+-++.+....+.|+.....+.+.||.+..++.-|.++|+.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5556666666777899999999999999999999999999999887544 33447776654
No 335
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.73 E-value=9.4 Score=35.25 Aligned_cols=70 Identities=20% Similarity=0.156 Sum_probs=47.9
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC----CCchHHHHHHHhhhCCCcchHH
Q 004938 504 REALELVETMPFAP--NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD----HDGALVLLSNIYAKDKRWQDVG 573 (722)
Q Consensus 504 ~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~ 573 (722)
++|+..|-.+.-.| +.......+..|....|.++++.++-+++++.+. ++..+..|+.+|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45666666652222 3333444555566678889999999998886533 4678889999999999888774
No 336
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.68 E-value=12 Score=29.77 Aligned_cols=61 Identities=8% Similarity=0.029 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 004938 99 KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160 (722)
Q Consensus 99 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 160 (722)
-++.+-++.+......|++....+.|++|.|.+++..|.++++-+.... ..+...|..++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 3566667777777888999999999999999999999999998776321 223445555543
No 337
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=78.40 E-value=2.2 Score=26.61 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=8.9
Q ss_pred cchHHHHHHHHHhcCCHHHH
Q 004938 487 YEHYGCMVDLFGRANLLREA 506 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A 506 (722)
...|..+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 34444444444444444444
No 338
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.09 E-value=8 Score=35.88 Aligned_cols=91 Identities=20% Similarity=0.187 Sum_probs=56.1
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRANLLREALELVETM-PFAPNV-VIWGSLMAACRVHGEIE 536 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~ 536 (722)
.|-..|.+.-|+-=|..... +.|+ +.+||-|.--+...|+++.|.+.|+.. ...|.. .+...-.-++.--|+++
T Consensus 74 lYDSlGL~~LAR~DftQaLa---i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 34455666666666655543 4454 466777777777777787777777776 555532 22222222344567777
Q ss_pred HHHHHHHHHHccCCCCC
Q 004938 537 LAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 537 ~a~~~~~~~~~~~p~~~ 553 (722)
.|.+-+.+..+.+|++|
T Consensus 151 LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 151 LAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hhHHHHHHHHhcCCCCh
Confidence 77777777777777765
No 339
>PRK12798 chemotaxis protein; Reviewed
Probab=77.63 E-value=95 Score=32.38 Aligned_cols=179 Identities=17% Similarity=0.247 Sum_probs=113.5
Q ss_pred cCCHHHHHHHHHhcCC----CChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHH
Q 004938 398 CGSLESAREVFERMRR----RNVISWTSMINAF-AIHGDARNALIFFNKMKDESIDPNGV----TFIGVLYACSHAGLVD 468 (722)
Q Consensus 398 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 468 (722)
.|+.++|.+.+..+.. +....+-+|+.+- ....++.+|+++|++..- .-|... ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5788888888877763 3445666666553 446678899999988765 355432 3444445667889999
Q ss_pred HHHHHHHHhHhhcCCCCCcchHH-HHHHHHHh---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004938 469 EGREIFASMTNEYNIPPKYEHYG-CMVDLFGR---ANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQ 544 (722)
Q Consensus 469 ~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 544 (722)
++..+-.....+|...|-...|. .++..+.+ .-..+.-.+++..|.-.-....|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98887777777666555433332 23333333 334455556666664222356888888888999999999999999
Q ss_pred HHccCCCCCchHHHHHHHhhh-----CCCcchHHHHHHHH
Q 004938 545 LLQLDPDHDGALVLLSNIYAK-----DKRWQDVGELRKSM 579 (722)
Q Consensus 545 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m 579 (722)
++.+... ...-...+.+|.. ..+.+++.+.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9988743 3333444455543 23455555555443
No 340
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=77.02 E-value=60 Score=29.73 Aligned_cols=94 Identities=11% Similarity=0.123 Sum_probs=55.8
Q ss_pred HhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcC------
Q 004938 307 FDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA------ 380 (722)
Q Consensus 307 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~------ 380 (722)
..+..++-.+.|-....+-++.-+.+++-+.|- ...=.+++-.|.+.-++.+++.++..+.+..
T Consensus 99 tkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~L 168 (233)
T PF14669_consen 99 TKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSL 168 (233)
T ss_pred HhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 444444555666666666666655555443321 1112345556677777888888777765432
Q ss_pred --------CCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 381 --------FGGDLRVNNAIIDMYAKCGSLESAREVFER 410 (722)
Q Consensus 381 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 410 (722)
..+--.+.|.....+.+.|.+|.|..++++
T Consensus 169 KGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 169 KGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred cCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 223345566677777777777777777764
No 341
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.30 E-value=14 Score=33.42 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccC
Q 004938 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587 (722)
Q Consensus 535 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 587 (722)
+++|...|+++.+.+|++..+...| .+. ++|-+++.++.+++....
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksL-e~~------~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSL-EMA------AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHH-HHH------HTHHHHHHHHHHSSS---
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHH-HHH------HhhHHHHHHHHHHHhhhh
Confidence 6788889999999999986433333 332 468888888888776543
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.95 E-value=2.8 Score=24.19 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=15.4
Q ss_pred hHHHHHHHhhhCCCcchHHHHHH
Q 004938 555 ALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 555 ~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44566777777777777776654
No 343
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=75.85 E-value=1.1e+02 Score=32.08 Aligned_cols=69 Identities=13% Similarity=0.216 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004938 289 AMVSGYSRAGQVEDARLIFDQMVEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA 361 (722)
Q Consensus 289 ~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 361 (722)
.|+.-|.-.|++.+|.+..+++.-| ..+.+.+++.+.-+.|+.+..+.+++..-..|+ .|.+.+-.+|.
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~ 585 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhh
Confidence 3555566677777777777766554 345666777777777766666666666655542 34444444443
No 344
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.23 E-value=7.3 Score=25.13 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566666666677777777777666544
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.54 E-value=2.8 Score=25.47 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=24.8
Q ss_pred hHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 555 ALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 555 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
++..++.+|.+.|++++|.+.++.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999998764
No 346
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.07 E-value=5.5 Score=24.44 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=25.0
Q ss_pred chHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 554 GALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
..+..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678999999999999999999998765
No 347
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=74.00 E-value=14 Score=29.75 Aligned_cols=60 Identities=8% Similarity=0.026 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 004938 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160 (722)
Q Consensus 100 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 160 (722)
+..+-++.+....+.|++....+.|++|.|.+++..|.++++-+...- .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455566666667788888888888888888888888888888765542 233335655553
No 348
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.72 E-value=21 Score=33.02 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=50.9
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHc---CCCCChhHHHHHHHHHHhcCCHHHHH
Q 004938 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN---AFGGDLRVNNAIIDMYAKCGSLESAR 405 (722)
Q Consensus 331 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~ 405 (722)
-++|++.|-++...+.- +....-..+..|....+.+++.+++..+++. +-.+|+.++.+|+..|.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 35678888887776643 4444444555555567888888888777663 33567778888888888888887764
No 349
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.43 E-value=11 Score=34.02 Aligned_cols=46 Identities=24% Similarity=0.226 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCC----cchHHHHHHHHH
Q 004938 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR----WQDVGELRKSMK 580 (722)
Q Consensus 535 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 580 (722)
+++|..-|++++.++|+...++..++++|...+. ..+|.+.|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 5677888888899999999999999999987764 334445555443
No 350
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.09 E-value=67 Score=34.93 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=49.2
Q ss_pred hcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHH
Q 004938 296 RAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLY 375 (722)
Q Consensus 296 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~ 375 (722)
+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|..... |..++-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 445555554444332 2345566666666677777666666655443 33444455555554444444333
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 376 IDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410 (722)
Q Consensus 376 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 410 (722)
..+.|. .|.-.-+|...|+++++.+++.+
T Consensus 718 ~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 718 AKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 433331 12222334455666665555544
No 351
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.73 E-value=22 Score=24.90 Aligned_cols=28 Identities=14% Similarity=0.031 Sum_probs=22.8
Q ss_pred hHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 555 ALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 555 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..+.++-.+.+.|++++|.+..+.+.+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3556778899999999999999999873
No 352
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=70.05 E-value=1.4e+02 Score=30.81 Aligned_cols=110 Identities=17% Similarity=0.229 Sum_probs=79.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHccC---CCC---
Q 004938 491 GCMVDLFGRANLLREALELVETMPFAPNVVIWGS------------LMAACRVHGEIELAEFAAKQLLQLD---PDH--- 552 (722)
Q Consensus 491 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~------------ll~~~~~~g~~~~a~~~~~~~~~~~---p~~--- 552 (722)
..|...+..+|++++|.+++.+.++ .||++ -+..|...+|+-.|.-+.+++.... |+-
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 3566777889999999999998753 23333 2456888899999988888876532 221
Q ss_pred -CchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEe
Q 004938 553 -DGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 604 (722)
Q Consensus 553 -~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~ 604 (722)
-.+|..+..+..+.+.+=++.+.++...+.|..+.-.--|+.+-..+-.|+.
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~ 263 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV 263 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe
Confidence 1367788898889999999999999998888776644456655444444443
No 353
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.86 E-value=1.6e+02 Score=31.52 Aligned_cols=159 Identities=17% Similarity=0.210 Sum_probs=109.1
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
|-...-+++..+.++..+.-...+..+|..-| .+...|..++.+|... .-+.-..+++++.+..+ .|+.....|++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44566678888888888888889999998865 5677888888888877 55677788888888754 34555566777
Q ss_pred HHHhcCCHHHHHHHHHhcCC------CCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh
Q 004938 394 MYAKCGSLESAREVFERMRR------RNV---ISWTSMINAFAIHGDARNALIFFNKMKD-ESIDPNGVTFIGVLYACSH 463 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~------~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~ 463 (722)
.|.+ ++.+.+...|.++.. .+. ..|.-++..- ..+.+..+.+..+... .|..--.+.+.-+-.-|+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 7766 888888888877643 121 2566655422 2455666666666554 2333344555556667777
Q ss_pred cCCHHHHHHHHHHhHh
Q 004938 464 AGLVDEGREIFASMTN 479 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~ 479 (722)
..++++|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 7788888888777765
No 354
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=69.65 E-value=1.5e+02 Score=30.90 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=57.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhcCCCC--CcchHHHHHHHHH-hcCCHHHHHHHHHhCCC--CCC------HHHHHHHH
Q 004938 458 LYACSHAGLVDEGREIFASMTNEYNIPP--KYEHYGCMVDLFG-RANLLREALELVETMPF--APN------VVIWGSLM 526 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~--~p~------~~~~~~ll 526 (722)
+..+.+.|-+..|.++.+-+.. +.| |+...-.+||.|+ ++++++--+++.+.... ..+ ...|...+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL 186 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH
Confidence 3466778888888888887765 333 5555566677775 77888777777776522 111 13333333
Q ss_pred HHHHHcCCH---------------HHHHHHHHHHHccCCC
Q 004938 527 AACRVHGEI---------------ELAEFAAKQLLQLDPD 551 (722)
Q Consensus 527 ~~~~~~g~~---------------~~a~~~~~~~~~~~p~ 551 (722)
.-+ ..++. +.|...+++++...|.
T Consensus 187 A~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 187 AYF-RLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHH-HhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 333 33444 8888888888887773
No 355
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=69.59 E-value=19 Score=34.20 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCHH-------HHHHHHHHHHccC--CC----CCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 520 VIWGSLMAACRVHGEIE-------LAEFAAKQLLQLD--PD----HDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~-------~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
..+.-+...|+..|+.+ .|.+.|+++.+.+ |. .......++.++.+.|+.++|.+.+..+...+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 45555666677777744 4455555555433 22 23466789999999999999999999987754
No 356
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.41 E-value=11 Score=35.55 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHH
Q 004938 501 NLLREALELVETM-PFAPNVV-IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578 (722)
Q Consensus 501 g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 578 (722)
.+++.|.+.+.+. .+.|... -|..-+-.+.+..+++.+..--.+++++.|+.....+.++........+++|...+.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3445555544443 4566653 3444444555677777777777777778887777777777777777777777777776
Q ss_pred HHh
Q 004938 579 MKE 581 (722)
Q Consensus 579 m~~ 581 (722)
...
T Consensus 104 a~s 106 (284)
T KOG4642|consen 104 AYS 106 (284)
T ss_pred HHH
Confidence 643
No 357
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=69.12 E-value=50 Score=27.02 Aligned_cols=86 Identities=12% Similarity=0.105 Sum_probs=48.3
Q ss_pred CchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 365 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
..++|..|.+.+...+. ....+--.-+..+...|++++|...=.....||...|-++-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45677777776666542 222222233445667888888844444445588888877654 467777777777777765
Q ss_pred cCCCCCHHHH
Q 004938 445 ESIDPNGVTF 454 (722)
Q Consensus 445 ~g~~p~~~t~ 454 (722)
.| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 54 3433333
No 358
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.75 E-value=2.5 Score=41.98 Aligned_cols=60 Identities=7% Similarity=-0.026 Sum_probs=28.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 525 LMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 525 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
-.+++.+.++...|++-+..+++++|+...-|-.-..+....|+|++|...+....+.++
T Consensus 154 r~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 154 RASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred ccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 333444444444455555555555555444444444444444555555555554444443
No 359
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.99 E-value=65 Score=35.88 Aligned_cols=183 Identities=17% Similarity=0.270 Sum_probs=111.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCCh----------hhHHHHHHHHHccCCchHHHHHHHHHHHcC--CCC
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK----------VTMLSVISACAHLGVLDQAQRIHLYIDKNA--FGG 383 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~--~~~ 383 (722)
.+-..++-.|....+++..+++.+.+.. -||. +.|...++--.+.|+-++|..+.--+++.. +.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3455667778888889988898888876 3432 234444444445677788877776666532 233
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHH
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT---FIGVLYA 460 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a 460 (722)
++||-||++ |+.|- +-+.|...+..+.|++.|++.-+ +.|+..+ +..|+.+
T Consensus 279 ---------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 ---------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred ---------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 346667754 33221 11234445566788888888877 6787653 4444433
Q ss_pred HHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004938 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540 (722)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 540 (722)
-.+ .++...++ .. .-..|-.+++|.|.+++-.++|+-. ..+.+-.-.+++.+|..
T Consensus 333 aG~--~Fens~El----q~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 AGE--HFENSLEL----QQ---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQ 387 (1226)
T ss_pred hhh--hccchHHH----HH---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHH
Confidence 221 11111111 10 1123456678999998888877532 23455566788999999
Q ss_pred HHHHHHccCCCC
Q 004938 541 AAKQLLQLDPDH 552 (722)
Q Consensus 541 ~~~~~~~~~p~~ 552 (722)
+.+++.++.|..
T Consensus 388 Aae~mfKLk~P~ 399 (1226)
T KOG4279|consen 388 AAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHhccCCce
Confidence 999999998863
No 360
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=67.36 E-value=2.7e+02 Score=33.20 Aligned_cols=125 Identities=14% Similarity=0.043 Sum_probs=60.8
Q ss_pred CChhhHHHHHHHHHccCCchH-HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH-HHHHhcCCCChHHHHHHHHH
Q 004938 348 PDKVTMLSVISACAHLGVLDQ-AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAR-EVFERMRRRNVISWTSMINA 425 (722)
Q Consensus 348 p~~~t~~~ll~~~~~~g~~~~-a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~ 425 (722)
++...-.....++...+..+. +...+..+.+ .++..+-.+.+..+.+.|..+.+. .+...+..+|...-...+.+
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~a 830 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARA 830 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHH
Confidence 344444444445554444322 2222333322 345556666666666666654442 23333444555455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
+...+. +++...+..+.. .|+...-...+.++.+......+...+..+.+
T Consensus 831 L~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 831 LAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 555554 345555555554 45555555555556554333345555555444
No 361
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=64.79 E-value=3e+02 Score=32.82 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=33.5
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004938 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARN-ALIFFNKMKDESIDPNGVTFIGVLYAC 461 (722)
Q Consensus 383 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~ 461 (722)
+|..+-...+.++.+.+..+ .+......++...-...+.++...+..+. +...+.++.. .+|...-...+.++
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aL 799 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAAL 799 (897)
T ss_pred CCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 34444444444444433322 12222333444444444444444443321 2333333332 34444444555555
Q ss_pred HhcCCHHH
Q 004938 462 SHAGLVDE 469 (722)
Q Consensus 462 ~~~g~~~~ 469 (722)
...|..+.
T Consensus 800 g~~g~~~~ 807 (897)
T PRK13800 800 AELGCPPD 807 (897)
T ss_pred HhcCCcch
Confidence 55554433
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.71 E-value=18 Score=38.71 Aligned_cols=100 Identities=18% Similarity=0.065 Sum_probs=72.4
Q ss_pred HhcCCHHHHHHHHHHhHhhcCCCC--CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHH
Q 004938 462 SHAGLVDEGREIFASMTNEYNIPP--KYEHYGCMVDLFGRANLLREALELVETM-PF-APNVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~ 537 (722)
.-.|+...|...+..+.. ..| .......|...+.+.|...+|-.++.+. .+ ...+.++.++.+++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 346778888887776654 333 2234556777777888888888887665 22 2345677888889999999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
|++.++++++++|+++..-..|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999877776655443
No 363
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.52 E-value=88 Score=32.78 Aligned_cols=121 Identities=13% Similarity=0.044 Sum_probs=60.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHhHhhcCCC--CCcchHHHHHHHHHh
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNGV--TFIGVLYACS--HAGLVDEGREIFASMTNEYNIP--PKYEHYGCMVDLFGR 499 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~ 499 (722)
+...+++..|.++|+++... +.++.. .+..+..+|. ..-++++|.+.++..... ... .....+..++...-.
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~-~~~l~~~~~~l~~~~~~~~~ 218 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR-DKALNQEREGLKELVEVLKA 218 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHHHH
Confidence 33678888888888888876 555544 3333444443 456778888888877652 111 011222222222222
Q ss_pred cCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHH--cCCHHHHHHHHHHHHcc
Q 004938 500 ANLLREALELVETMPFAPN-VVIWGSLMAACRV--HGEIELAEFAAKQLLQL 548 (722)
Q Consensus 500 ~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~ 548 (722)
...+....+....-+.++. ......+.++-++ .|+++.|...+-+++|+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 219 LESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1111111111111111111 1233444455543 78888888777776663
No 364
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.20 E-value=96 Score=27.18 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=47.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCC---------CCCcccHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCCHhHHHHH
Q 004938 155 QTGLVGMYGACGKILDARLMFDKMS---------YRDIVPWSVMIDGYFQNGL-FDEVLNLFEEMKMSNVEPDEMVLSKI 224 (722)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~f~~m~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~l 224 (722)
.|.++.-.+..+++....++++.+. ..+-.+|+.++.+..+..- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3445544444455555555444442 2345567777777755554 34556777777777777777778878
Q ss_pred HHHHHcc
Q 004938 225 LSACSRA 231 (722)
Q Consensus 225 l~~~~~~ 231 (722)
++++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7777654
No 365
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.08 E-value=1.5e+02 Score=29.09 Aligned_cols=83 Identities=17% Similarity=0.260 Sum_probs=45.0
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004938 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462 (722)
Q Consensus 383 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 462 (722)
.++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++ |...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 35677888899999999999999877554333333332233222222332222 111112222 355
Q ss_pred hcCCHHHHHHHHHHhHhh
Q 004938 463 HAGLVDEGREIFASMTNE 480 (722)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~ 480 (722)
..+++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 678888888888777653
No 366
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.81 E-value=32 Score=29.52 Aligned_cols=24 Identities=13% Similarity=0.002 Sum_probs=11.2
Q ss_pred HHHHHhhhCCCcchHHHHHHHHHh
Q 004938 558 LLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 558 ~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
.|+-.+.+.|+++.+.++.+.+.+
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444455555555555444443
No 367
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.04 E-value=1e+02 Score=27.06 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004938 415 NVISWTSMINAFAIHGD-ARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464 (722)
Q Consensus 415 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 464 (722)
+..+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44567777777654444 334566777777766777777777777776654
No 368
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=62.91 E-value=2.9e+02 Score=31.93 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=28.2
Q ss_pred cCCHHHHHHHHHhcCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 398 CGSLESAREVFERMRR--------RNVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 398 ~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
.|+++.|.++-+.... ..++.+..+..+..-.|++++|..+..+..+
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 5666666665554331 3445566666666667777777766655544
No 369
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.88 E-value=12 Score=29.69 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=28.6
Q ss_pred HHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 540 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..+++.++.+|++......++..+...|++++|.+.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4456666677777777777777777777777777776666554
No 370
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=62.85 E-value=1.9e+02 Score=30.03 Aligned_cols=64 Identities=25% Similarity=0.285 Sum_probs=48.7
Q ss_pred CHHHHHHH---HHHHHHcCCHHHHHHHHHHHHccCCC-CCchHHHHHHHhh-hCCCcchHHHHHHHHHh
Q 004938 518 NVVIWGSL---MAACRVHGEIELAEFAAKQLLQLDPD-HDGALVLLSNIYA-KDKRWQDVGELRKSMKE 581 (722)
Q Consensus 518 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 581 (722)
|...|.++ +....+.|-+..|.+..+-++.++|. |+-.....++.|+ +.+.++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34445444 44677899999999999999999998 7777777778775 67888877777776554
No 371
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=62.39 E-value=13 Score=22.16 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHHHHHH
Q 004938 533 GEIELAEFAAKQLLQLDPDHDGALVLLSN 561 (722)
Q Consensus 533 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 561 (722)
|+.+.+..+|++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788889999999888887777766554
No 372
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.16 E-value=1.3e+02 Score=27.78 Aligned_cols=88 Identities=10% Similarity=0.047 Sum_probs=51.7
Q ss_pred HHHccCCchHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHH--HHHHHHHHHHcCCHHH
Q 004938 359 ACAHLGVLDQAQRIHLYIDKNAFGGD--LRVNNAIIDMYAKCGSLESAREVFERMRRRNVIS--WTSMINAFAIHGDARN 434 (722)
Q Consensus 359 ~~~~~g~~~~a~~i~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~ 434 (722)
.+...+++++|...++......-..+ ..+--.|.......|.+|+|...++....++-.+ ...-.+.+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 44566677777766666554311111 1111234455667777777777777776654333 2233455777777777
Q ss_pred HHHHHHHHHHcC
Q 004938 435 ALIFFNKMKDES 446 (722)
Q Consensus 435 A~~~~~~m~~~g 446 (722)
|..-|++.+..+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 877777777654
No 373
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.96 E-value=71 Score=31.26 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=50.9
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC--CCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-
Q 004938 321 MISGYAENNHPQEALKLFNEMQVC--GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK- 397 (722)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~- 397 (722)
=|.+++..|+|.+++.+.-+--+. .++|.. .-.-|-.|.+.+.+....++-...++..-.-+..-|.++++.|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 378888899999988776555432 233333 233333466777777777776666654333334446666666543
Q ss_pred ----cCCHHHHHHHH
Q 004938 398 ----CGSLESAREVF 408 (722)
Q Consensus 398 ----~g~~~~A~~~~ 408 (722)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 45666665554
No 374
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.74 E-value=28 Score=32.52 Aligned_cols=64 Identities=19% Similarity=0.117 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
.+.-+..+.+.+.+++|+...+.- .-+| |...-..|+..++..|++++|..-++-+-++.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345566788889999998887665 4455 455667788889999999999999999989998865
No 375
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=61.51 E-value=13 Score=24.92 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=22.3
Q ss_pred HHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 557 VLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 557 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
..|+.+|...|+.+.|.++++++.+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 467888999999999999999887644
No 376
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.80 E-value=40 Score=26.41 Aligned_cols=32 Identities=9% Similarity=0.136 Sum_probs=13.8
Q ss_pred cCChHHHHHHHHhcccCCchHHHHHHHHHHhcC
Q 004938 266 CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAG 298 (722)
Q Consensus 266 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 298 (722)
.|+.+.|+++++.+. +....|..++.++-..|
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~ 80 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETE 80 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcC
Confidence 344444555544444 44444444444443333
No 377
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.43 E-value=3.1e+02 Score=31.15 Aligned_cols=144 Identities=17% Similarity=0.185 Sum_probs=81.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCC-CCcchHHHHHHHHHhcCCc
Q 004938 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVE-KDLICWSAMISGYAENNHP 331 (722)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~ 331 (722)
..++...|+.+.-.|++++|-...-+|...+..-|.-.+.-+...++..+...++-.-+. -+...|..++..|.. .+
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~- 469 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SD- 469 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HH-
Confidence 346677788888888888888888888888888888877777777776554433322222 245667777777766 11
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 004938 332 QEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERM 411 (722)
Q Consensus 332 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 411 (722)
..-|.+.+.. .+++...-..++++- ..+..+. .-+..+-..|+..|...++++.|...+-..
T Consensus 470 ---~~~F~e~i~~-Wp~~Lys~l~iisa~------------~~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 470 ---VKGFLELIKE-WPGHLYSVLTIISAT------------EPQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred ---HHHHHHHHHh-CChhhhhhhHHHhhc------------chHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhc
Confidence 1223333221 122222222222211 1111111 112223334778888888888888887777
Q ss_pred CCCCh
Q 004938 412 RRRNV 416 (722)
Q Consensus 412 ~~~~~ 416 (722)
..+++
T Consensus 532 k~~~v 536 (846)
T KOG2066|consen 532 QDKDV 536 (846)
T ss_pred cChHH
Confidence 65443
No 378
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=59.27 E-value=5.2e+02 Score=33.73 Aligned_cols=56 Identities=11% Similarity=0.037 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVET 512 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 512 (722)
+|......+..+|.++.|...+-.+.+ .+ . ...+--....+-..|+-..|+.++++
T Consensus 1672 ~wLqsAriaR~aG~~q~A~nall~A~e-~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~ 1727 (2382)
T KOG0890|consen 1672 CWLQSARIARLAGHLQRAQNALLNAKE-SR-L--PEIVLERAKLLWQTGDELNALSVLQE 1727 (2382)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhh-cc-c--chHHHHHHHHHHhhccHHHHHHHHHH
Confidence 455555555556666666555544443 11 2 23344445555566666666665554
No 379
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.23 E-value=19 Score=40.50 Aligned_cols=115 Identities=13% Similarity=0.185 Sum_probs=74.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 004938 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508 (722)
Q Consensus 429 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 508 (722)
+.++++.+.+.+...--| .++|..+.+.|-.+-|+.+.+.=..++ ++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 456666665544322211 234555667777777766654433322 23456899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHH
Q 004938 509 LVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575 (722)
Q Consensus 509 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 575 (722)
.-.+.. |..+|..|+.....+|+.+.|+..|++.... ..|+.+|.-.|+.++-.++
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf--------ekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNF--------EKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh--------hheeEEEEEeCCHHHHHHH
Confidence 888774 7788999999999999999999999887543 3344455555555544433
No 380
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.56 E-value=1.3e+02 Score=32.77 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=56.1
Q ss_pred HHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004938 395 YAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
..+.|+++.|.++..+. .+..-|..|.++....|+...|.+.|.+... |.+|+-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34566677666655443 3556677777777777777777777766543 334555555555554333333
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 475 ASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
....+. | ..|.-.-+|...|+++++.+++.+-
T Consensus 716 ~~~~~~-g------~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQ-G------KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhh-c------ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 333321 2 1222333455667777777766655
No 381
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.43 E-value=2.6e+02 Score=29.89 Aligned_cols=110 Identities=18% Similarity=0.125 Sum_probs=62.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccCCc------ccE-EEeCCE
Q 004938 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA------CSR-IEMNNE 598 (722)
Q Consensus 526 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~------~s~-~~~~~~ 598 (722)
+.++.+..+...+.+-.+.+....-+.+.+...-++.+...|++..|.+++.. .++.+.+| ++. |-.+|-
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~---sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV---SNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh---cccccccCccccchhhhheeecCc
Confidence 34455556666666666666655556666777778899999999999887654 34444443 332 222221
Q ss_pred -EEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCcccCCccccc
Q 004938 599 -VYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALV 640 (722)
Q Consensus 599 -~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~pd~~~~~~ 640 (722)
+..|.. ..|......+.+..+-+..-...|+.|-+.+.+.
T Consensus 290 GcIh~~~--~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 290 GCIHYQL--GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred ceEeeeh--hhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 222222 2233333344444433334445688888776543
No 382
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.92 E-value=1.2e+02 Score=29.67 Aligned_cols=87 Identities=20% Similarity=0.172 Sum_probs=51.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh-
Q 004938 423 INAFAIHGDARNALIFFNKMKD--ESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR- 499 (722)
Q Consensus 423 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~- 499 (722)
|.+++..|++.+++...-+--+ ..++|... ..-|-.|++.|....+.++-..-.+. .-.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 5667777777777665433322 12334333 33333477788877777776666653 222233447777777654
Q ss_pred ----cCCHHHHHHHHHh
Q 004938 500 ----ANLLREALELVET 512 (722)
Q Consensus 500 ----~g~~~~A~~~~~~ 512 (722)
.|.++||++++..
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 6888888888844
No 383
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=57.43 E-value=1.4e+02 Score=32.45 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--Ch---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 389 NAIIDMYAKCGSLESAREVFERMRRR--NV---ISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 389 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
..|+.-|.+.+++++|..++..|.=. .. .+.+.+.+.+.+..-.++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35777888999999999998888621 11 2344444445444434444455555444
No 384
>PF13934 ELYS: Nuclear pore complex assembly
Probab=56.95 E-value=1.9e+02 Score=27.78 Aligned_cols=106 Identities=18% Similarity=0.158 Sum_probs=55.4
Q ss_pred HHHHHHHH--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 004938 419 WTSMINAF--AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496 (722)
Q Consensus 419 ~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 496 (722)
|...+.|+ ..++++++|++.+-.- .+.|+... -++.++...|+.+.|..+++.+.- ...+.+....+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 44445554 3456677777666221 12222211 355666667777777777765421 11122222333333
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004938 497 FGRANLLREALELVETMPFAPNVVIWGSLMAACRVHG 533 (722)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 533 (722)
..+|.+.||..+.+...-.-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 556788888887777642212346666666665433
No 385
>PRK10941 hypothetical protein; Provisional
Probab=56.67 E-value=62 Score=31.90 Aligned_cols=66 Identities=11% Similarity=-0.002 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchH
Q 004938 491 GCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 491 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
+.+-..|.+.++++.|+...+.+ .+.|+ ..-|.--.-.|.+.|....|..-++..++..|+++.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 34556677888888888888877 45554 45677777778888999999999999999888887543
No 386
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.45 E-value=2.3e+02 Score=30.16 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=25.7
Q ss_pred cHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 004938 185 PWSVMIDGYFQ---NGLFDEVLNLFEEMKMSNVEPDEMVLSKILSA 227 (722)
Q Consensus 185 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 227 (722)
.+..+++++.+ .++++.|+..+..|.+.|..|....-..++.+
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34445555554 46777788888888777766664443333333
No 387
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=56.15 E-value=6.9 Score=40.87 Aligned_cols=95 Identities=13% Similarity=0.132 Sum_probs=67.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCC
Q 004938 458 LYACSHAGLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGRANLLREALELVETM-PFAPNV-VIWGSLMAACRVHGE 534 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~ 534 (722)
++.....+.++.|..++.++++ +.|+ ...|..-..++.+.+.+..|+.=..++ ...|.. ..|---..+|.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4455667788999999988886 4554 444555557788888888887666555 555653 344444566777888
Q ss_pred HHHHHHHHHHHHccCCCCCch
Q 004938 535 IELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 535 ~~~a~~~~~~~~~~~p~~~~~ 555 (722)
+.+|...++....+.|+++.+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHH
Confidence 899999999999999988643
No 388
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=55.50 E-value=38 Score=21.48 Aligned_cols=30 Identities=20% Similarity=-0.001 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHHHccCCC
Q 004938 522 WGSLMAACRVHGEIELAEFA--AKQLLQLDPD 551 (722)
Q Consensus 522 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 551 (722)
|-.+.-.+...|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44556667778888888888 4466666654
No 389
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=55.40 E-value=43 Score=29.26 Aligned_cols=65 Identities=20% Similarity=0.082 Sum_probs=45.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcc
Q 004938 503 LREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570 (722)
Q Consensus 503 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 570 (722)
-+.|.++++-|+ ...............|++..|..+...++..+|++..+-...+++|...|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 456777777775 23333344556778999999999999999999999988888888877665443
No 390
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=55.09 E-value=3e+02 Score=29.59 Aligned_cols=388 Identities=10% Similarity=0.064 Sum_probs=186.6
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 004938 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLI 260 (722)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 260 (722)
|+.-|...|..+-+.+.+.+.-.+|.+|... +-.||...+.+. .-+-..-+++.|+.++...++... .++..|-...
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrgLR~np-dsp~Lw~eyf 181 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRGLRFNP-DSPKLWKEYF 181 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHHhhcCC-CChHHHHHHH
Confidence 8888999998888888899999999999764 334444333321 223334458999999988887642 2344444333
Q ss_pred HHHHhcCC-hHHHHHHHHhc-------ccCCchHHHHH------HHHHHhcCCHHHHH-----------HHHhccCC---
Q 004938 261 TMYANCGC-MDMAKGLFDKV-------LLKNLVVSTAM------VSGYSRAGQVEDAR-----------LIFDQMVE--- 312 (722)
Q Consensus 261 ~~~~~~g~-~~~A~~~~~~~-------~~~~~~~~~~l------i~~~~~~g~~~~A~-----------~~f~~~~~--- 312 (722)
++-...-. ...-.+.+... ..+....|+.. +.+..+.-. ++.. .+.+.+..
T Consensus 182 rmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e-~~~~~~~d~~kel~k~i~d~~~~~~~ 260 (568)
T KOG2396|consen 182 RMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVE-LSVAEKFDFLKELQKNIIDDLQSKAP 260 (568)
T ss_pred HHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcc-hHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 32111000 00000000000 00001111110 111111111 0001 11122211
Q ss_pred CCcchHHHHHHHHH----h---------------cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC------Cch
Q 004938 313 KDLICWSAMISGYA----E---------------NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG------VLD 367 (722)
Q Consensus 313 ~~~~~~~~li~~~~----~---------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g------~~~ 367 (722)
.|+.+|.-+..-.. + .-..+....+|++..+. -|+...+...|..|...- .+.
T Consensus 261 ~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~ 338 (568)
T KOG2396|consen 261 DNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRIL 338 (568)
T ss_pred CCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 24445544432211 0 00112233455555442 345555666666664332 233
Q ss_pred HHHHHHHHHHHc-CC-CCChhHHHHHHHHHHhcCCH-HHHHHHHHhcCCCChHHHHHHHHHHHHc-CCHH-HHHHHHHHH
Q 004938 368 QAQRIHLYIDKN-AF-GGDLRVNNAIIDMYAKCGSL-ESAREVFERMRRRNVISWTSMINAFAIH-GDAR-NALIFFNKM 442 (722)
Q Consensus 368 ~a~~i~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~-~A~~~~~~m 442 (722)
.-..+++...+. +. +.....|..+.-++.+.... +-|..+..+.-..+...|-.-+...... .+++ .-.++|...
T Consensus 339 h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~ 418 (568)
T KOG2396|consen 339 HTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHL 418 (568)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 333444444432 22 22345566666666665543 3344444455566666666655554422 1221 112223333
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCC-HHHH-H-HHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-C-C
Q 004938 443 KDESIDPNGVTFIGVLYACSHAGL-VDEG-R-EIFASMTNEYNIPPK-YEHYGCMVDLFGRANLLREALELVETMP-F-A 516 (722)
Q Consensus 443 ~~~g~~p~~~t~~~ll~a~~~~g~-~~~a-~-~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~ 516 (722)
...-..+-...+.+.. .|+ .... . .++..... ...|+ ...-+.+++-+.+.|-..+|...+.+.. . +
T Consensus 419 r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp 491 (568)
T KOG2396|consen 419 RKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPP 491 (568)
T ss_pred HHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCC
Confidence 3321122222333332 122 1111 1 12222222 22344 3445678888888999999999998872 2 3
Q ss_pred CCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 517 PNVVIWGSLMAACR--VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 517 p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
|+...+..++..-. ..-+..-+..+|+.++...-.++..|......-...|.-+.+-.++....+
T Consensus 492 ~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 492 FSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 46677776665422 233477778888888754336666777666666677888777777665543
No 391
>PHA02875 ankyrin repeat protein; Provisional
Probab=54.90 E-value=2.8e+02 Score=29.30 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=10.3
Q ss_pred HHHHHhCCCHHHHHHHHhc
Q 004938 159 VGMYGACGKILDARLMFDK 177 (722)
Q Consensus 159 i~~~~~~g~~~~A~~~f~~ 177 (722)
+...++.|+.+.+..+++.
T Consensus 72 L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHCCCHHHHHHHHHc
Confidence 3344455666666655554
No 392
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=54.06 E-value=1.2e+02 Score=30.24 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=55.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc-chHHHHHHHH
Q 004938 422 MINAFAIHGDARNALIFFNKMKDESIDPNGV---TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY-EHYGCMVDLF 497 (722)
Q Consensus 422 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~ 497 (722)
+..+..+.|+..+|.+.|+.+.+. .|-.. .-..++.+|.....+.....++.+.-. ...+.+. ..|+ .++
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd-islPkSA~icYT---aAL 354 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD-ISLPKSAAICYT---AAL 354 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCcchHHHHHH---HHH
Confidence 333445677888888888776653 33221 223456666665555555444443321 1122211 1111 111
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
. ++..+-++ +.||..+-..|-.+ -..|.+...++.+.+|.-+.+..
T Consensus 355 L------K~RAVa~k--Fspd~asrRGLS~A------E~~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 355 L------KTRAVSEK--FSPETASRRGLSTA------EINAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred H------HHHHHHhh--cCchhhhhccccHH------HHHHHHHHHHHhhcCCCCcHHHH
Confidence 1 12222222 24554433322222 23467778888899988765443
No 393
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.90 E-value=2.4e+02 Score=27.77 Aligned_cols=159 Identities=14% Similarity=0.033 Sum_probs=77.8
Q ss_pred hCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH----HHCCCCCCHhHHHHHHHHHHccCChH-HHH
Q 004938 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEM----KMSNVEPDEMVLSKILSACSRAGNLS-YGE 238 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~ 238 (722)
+.+++++|++++-. =...+.+.|+...|-++-.-| .+.+.++|......++......+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 45566666666532 233455566665554443333 34566666666555555554443211 122
Q ss_pred HHHHHHHH---cC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 004938 239 AVHEFIID---NN--VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313 (722)
Q Consensus 239 ~~~~~~~~---~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 313 (722)
.+.+.+++ .| ...|+.....+...|.+.|++.+|+..|-.-..++...+..++..+...|...++-
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~d--------- 141 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEAD--------- 141 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HH---------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchh---------
Confidence 22222222 22 23477888889999999999999998875544444433333443333333333321
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVC 344 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 344 (722)
....-.+-.|...++...|...++...+.
T Consensus 142 --lfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 142 --LFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp --HHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11222344566677777777777666543
No 394
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.34 E-value=82 Score=26.03 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=22.7
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 004938 185 PWSVMIDGYFQNGLFDEVLNLFEEMKM 211 (722)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 211 (722)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488888888888888888888888766
No 395
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=51.02 E-value=26 Score=26.84 Aligned_cols=11 Identities=0% Similarity=0.051 Sum_probs=4.1
Q ss_pred HHHHHHHHHhH
Q 004938 468 DEGREIFASMT 478 (722)
Q Consensus 468 ~~a~~~~~~~~ 478 (722)
++|+..|....
T Consensus 23 ~~Al~~W~~aL 33 (80)
T PF10579_consen 23 QQALQKWRKAL 33 (80)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 396
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=50.86 E-value=1.2e+02 Score=24.06 Aligned_cols=62 Identities=24% Similarity=0.153 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--CchHHHHHHHhhhCCCcc-hHHHHHHHH
Q 004938 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH--DGALVLLSNIYAKDKRWQ-DVGELRKSM 579 (722)
Q Consensus 518 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~a~~~~~~m 579 (722)
|....-.+...+...|+++.|.+.+-.+++.+|+. ...-..+..++...|.-+ -+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45666677778888899999998888888877654 556667777777777643 455555544
No 397
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=50.80 E-value=24 Score=33.18 Aligned_cols=58 Identities=26% Similarity=0.355 Sum_probs=45.5
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 496 LFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
+....|+.+.|.+++.+. ...| ....|--+...--+.|+++.|.+.|++.++++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345677778888888777 4445 467888888888889999999999999999988753
No 398
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.58 E-value=39 Score=27.00 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=35.5
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCC---------CchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 529 CRVHGEIELAEFAAKQLLQLDPDH---------DGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
..+.||+..|.+.+.+.++..... ..+...++.++...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345677777777777766543221 12334677788888999999888887764
No 399
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.48 E-value=64 Score=30.85 Aligned_cols=53 Identities=11% Similarity=-0.083 Sum_probs=42.5
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...|++-++++....++...|.+..+|+.-+.+.+..=+.++|..-+....+.
T Consensus 241 L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 241 LKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 45788888889999999999999999988888777777777777777776653
No 400
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=49.34 E-value=39 Score=22.60 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=12.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 004938 422 MINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 422 li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 401
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=49.10 E-value=2.8e+02 Score=27.53 Aligned_cols=60 Identities=12% Similarity=0.172 Sum_probs=31.2
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHhccc-----CCchHHHHHHHHHHhcCCHHHHHHHHhc
Q 004938 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLL-----KNLVVSTAMVSGYSRAGQVEDARLIFDQ 309 (722)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~ 309 (722)
.++..+...+++.+++.+++.+-.++++.... .|...|..+|......|+..-..++.++
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 34444555555555555555555555544422 2445555555555555555555555543
No 402
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.64 E-value=5.1e+02 Score=30.42 Aligned_cols=130 Identities=15% Similarity=0.193 Sum_probs=64.8
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 396 (722)
-|..|+..|...|+.++|+++|.+.....-.-|... .+.-..+.+.+.+.+- ++..+.-...+ ..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~-------------~~~~e~ii~YL~~l~~-~~~~Li~~y~~-wv 570 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ-------------LDGLEKIIEYLKKLGA-ENLDLILEYAD-WV 570 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccch-------------hhhHHHHHHHHHHhcc-cchhHHHHHhh-hh
Confidence 488899999999999999999999876321011110 1111123333333331 21111111111 11
Q ss_pred hcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004938 397 KCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462 (722)
Q Consensus 397 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 462 (722)
-..+.+...++|..-.. .....-. -+-.|......+-++.+++.+....-.++..-.+.++.-|.
T Consensus 571 l~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 571 LNKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hccCchhheeeeeccChhhhccCCHH-HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 23445555555544110 0001111 12334556667777788888777655556555555555444
No 403
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.35 E-value=61 Score=24.88 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=32.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHH
Q 004938 428 IHGDARNALIFFNKMKDESIDPN-G-VTFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 428 ~~g~~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
...+.++|+..|....+.-..|. . .++..++.+++..|.+++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888777533332 2 36777788888888888776653
No 404
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=48.24 E-value=2.3e+02 Score=26.20 Aligned_cols=96 Identities=13% Similarity=0.138 Sum_probs=59.6
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC--
Q 004938 172 RLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNV-- 249 (722)
Q Consensus 172 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-- 249 (722)
..+.++-.++-.++|-.....-++.-..+++-+.|-- ..=.+++-.|-+.-++.+++.+++.+-+..+
T Consensus 96 ~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~f 165 (233)
T PF14669_consen 96 EALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHF 165 (233)
T ss_pred HHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444556667788888777777666665443311 1223556667777788888888887765422
Q ss_pred ------------CCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 004938 250 ------------ALDAHLQSTLITMYANCGCMDMAKGLFD 277 (722)
Q Consensus 250 ------------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 277 (722)
.+--.+.|.-...+.+.|.+|.|..+++
T Consensus 166 t~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 166 TSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 2334456666677777777777777754
No 405
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.06 E-value=62 Score=32.45 Aligned_cols=90 Identities=17% Similarity=0.125 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHh
Q 004938 490 YGCMVDLFGRANLLREALELVETM----PFAPN--VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 563 (722)
|.-=.+-|.+..++..|.+.|.+. --.|| .+.|+.-..+-.-.||+..++.-..+++.++|.+...|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 334456678888899999998776 12343 467777777777789999999999999999999988888888888
Q ss_pred hhCCCcchHHHHHHHH
Q 004938 564 AKDKRWQDVGELRKSM 579 (722)
Q Consensus 564 ~~~g~~~~a~~~~~~m 579 (722)
....++++|....+..
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8888866666555443
No 406
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.83 E-value=1.3e+02 Score=23.74 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=27.3
Q ss_pred hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 004938 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNAL 436 (722)
Q Consensus 397 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 436 (722)
..|+.+.|.++++.+. +....|...+.++...|..+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4567777777777777 67777777777777777655543
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.44 E-value=54 Score=30.44 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 514 PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 514 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
...|+..++..++.++...|+.++|.+..+++..+.|.
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 45688888888888888888888888888888888883
No 408
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.29 E-value=27 Score=29.83 Aligned_cols=33 Identities=30% Similarity=0.340 Sum_probs=24.4
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004938 93 SWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAI 127 (722)
Q Consensus 93 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 127 (722)
...|.-..|..+|..|+++|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446677888899999988888874 67777654
No 409
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=47.08 E-value=3e+02 Score=27.32 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
.+.....|..+|.+.+|.++-++... -+...|-.++..++..|+--.|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 44556778888888888888887765 3556788888888888888788877777654
No 410
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=46.94 E-value=1e+02 Score=26.12 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 434 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
+..+-++.+..-.+.|+.......+.+|.+.+++..|.++|+.++.+ ..+....|-.+++ +-..+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH---------HHHHHHHHh
Confidence 44555666666778999999999999999999999999999988764 3343345665543 445555555
Q ss_pred CC
Q 004938 514 PF 515 (722)
Q Consensus 514 ~~ 515 (722)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 43
No 411
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.91 E-value=4e+02 Score=28.35 Aligned_cols=49 Identities=24% Similarity=0.267 Sum_probs=33.8
Q ss_pred chHHHHHHHHHh---cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 004938 316 ICWSAMISGYAE---NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364 (722)
Q Consensus 316 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 364 (722)
..+..+++++.+ .++.+.|+.++..|.+.|..|....-..+..++...|
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 345556666655 4789999999999999998877665555555544443
No 412
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.88 E-value=1.6e+02 Score=24.33 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888888776
No 413
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=45.21 E-value=32 Score=33.81 Aligned_cols=60 Identities=27% Similarity=0.314 Sum_probs=33.0
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 498 GRANLLREALELVETM-PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 498 ~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
.+.|+.++|..+|+.. ...|+. ....-+..-.-.++++-+|..+|-+++.+.|.+..+.+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 4566666666666654 444432 23333333333455666666666666666666655444
No 414
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=45.09 E-value=62 Score=25.30 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=15.8
Q ss_pred CCHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 004938 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNH 330 (722)
Q Consensus 298 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 330 (722)
.+.++|.++++.++.++..+|.....++-..|+
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 334444444555555555555555554444443
No 415
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.84 E-value=1.1e+02 Score=26.12 Aligned_cols=42 Identities=10% Similarity=-0.009 Sum_probs=32.5
Q ss_pred HHHHHHHHHHc--cCCCCCchHHHHHHHhhhCCCcchHHHHHHH
Q 004938 537 LAEFAAKQLLQ--LDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578 (722)
Q Consensus 537 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 578 (722)
.+..+|+.+.. ++-+.+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77778887775 4556667788888889999999999988875
No 416
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.40 E-value=80 Score=21.51 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=19.3
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 004938 194 FQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS 226 (722)
Q Consensus 194 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 226 (722)
.+.|-..++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666666555555443
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.22 E-value=76 Score=25.33 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004938 523 GSLMAACRVHGEIELAEFAAKQLLQLD 549 (722)
Q Consensus 523 ~~ll~~~~~~g~~~~a~~~~~~~~~~~ 549 (722)
-.+.......|+.++|...+++++++-
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 334555677899999999999888753
No 418
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=44.02 E-value=1.8e+02 Score=27.84 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=18.1
Q ss_pred HcCCHHHHHHHHHHHHccCCCC
Q 004938 531 VHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
..++.+.|...++++++++|+.
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 3457789999999999999874
No 419
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=43.11 E-value=4.3e+02 Score=28.01 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=10.1
Q ss_pred HHHHHhCCCchHHHHHHHHHH
Q 004938 89 IRAISWSHRPKHALKVFLKML 109 (722)
Q Consensus 89 i~~~~~~g~~~~a~~~~~~m~ 109 (722)
|.++...| ..+.+.+....
T Consensus 45 LdgL~~~G--~~a~~~L~~aL 63 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSAL 63 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHH
Confidence 55555555 34555555544
No 420
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.01 E-value=2e+02 Score=27.67 Aligned_cols=117 Identities=11% Similarity=-0.038 Sum_probs=69.9
Q ss_pred HHhcCCHHHHHHHHHhcCC--CCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHH
Q 004938 395 YAKCGSLESAREVFERMRR--RNV-ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT-FIGVLYACSHAGLVDEG 470 (722)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a 470 (722)
|....+++.|...|.+... |++ .-|+.-+..+.+..+++.+.+--.+.++ +.||.+- ...+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 4455677888887766543 555 4456667777788888888777766666 6787664 33444566677778888
Q ss_pred HHHHHHhHh---hcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 471 REIFASMTN---EYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 471 ~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
+..+.+... ...+++.......|.++--+.=...++..+.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 887776632 2233444445555544433333334444444443
No 421
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=40.85 E-value=1.4e+02 Score=31.92 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=62.8
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--------CCch
Q 004938 484 PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD--------HDGA 555 (722)
Q Consensus 484 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~ 555 (722)
+.++..|-..+.-|...+++++|.++.+-.+ +...|.+|......+.+..-++.+|..+.+.+.- -+.-
T Consensus 570 pisV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltsk 646 (737)
T KOG1524|consen 570 PISVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSK 646 (737)
T ss_pred eeeccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcH
Confidence 3445567777788888999999999887764 5678888888888888888888888777665421 1112
Q ss_pred HHHHHHHhhhCCCcchHHHHHH
Q 004938 556 LVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 556 ~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
-..++....-.|+..||.-++.
T Consensus 647 e~~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 647 EEQMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHHHhccchhhhHHHH
Confidence 2244444555677777776654
No 422
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=40.56 E-value=3.3e+02 Score=26.14 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=36.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 004938 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV 452 (722)
Q Consensus 404 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 452 (722)
+..+|+-.-+|.+.....|+..+. .++.++|.+.+.++-+.|+.|...
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 345566666677777777777654 578999999999999999888653
No 423
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=40.36 E-value=94 Score=32.76 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=28.8
Q ss_pred CCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 513 MPFAPNV--VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 513 ~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
..++|.. .++.+-++.+.+++|+..|-.+.++++++.|..
T Consensus 292 c~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 292 CKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp S---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3555543 466777888889999999999999999999864
No 424
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=39.82 E-value=1.4e+02 Score=32.45 Aligned_cols=133 Identities=16% Similarity=0.038 Sum_probs=90.8
Q ss_pred CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh-cCCHHHHHHHHHhC-CCCCC--HHH
Q 004938 448 DPNGVTFIGVLYACSHA--GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR-ANLLREALELVETM-PFAPN--VVI 521 (722)
Q Consensus 448 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~-~~~p~--~~~ 521 (722)
-|+..+..+++.-...- ..-+.|-.++-.|.+ .+.|--...| +..+|.| .|+...|...+... ...|. .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 46666655555433322 233445566666654 3444333222 3344554 78999999988876 33332 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 522 WGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 522 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
...|.+.....|-.-.|-.++.+.+.+.-..+-++..++++|....+.+.|.+.++...++.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 45566677777778889999999999888888899999999999999999999999887654
No 425
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=39.41 E-value=1.3e+02 Score=25.53 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 004938 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLV 159 (722)
Q Consensus 100 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 159 (722)
+..+.++.+...++.|++......|++|.+.+|+..|.++++-++.. ..+...+|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 45566666777788899988899999999999999999999877543 233333454444
No 426
>PRK11619 lytic murein transglycosylase; Provisional
Probab=39.11 E-value=6.3e+02 Score=28.75 Aligned_cols=393 Identities=10% Similarity=-0.023 Sum_probs=195.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCCh
Q 004938 155 QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234 (722)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 234 (722)
-...+..+++.+++.+.++.+.. +..+..-.-....+....|+.++|.+....+-..|- ........++..+.+.|.
T Consensus 102 r~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~- 178 (644)
T PRK11619 102 QSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGK- 178 (644)
T ss_pred HHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCC-
Confidence 33445556677888877773322 223444445566777778888878777777654442 223344455555444443
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 004938 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314 (722)
Q Consensus 235 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 314 (722)
-.+..++.- +......|+...|..+...+..........++..+.+-.++ ...+.... ++
T Consensus 179 ---------------lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~---~~~~~~~~-~~ 238 (644)
T PRK11619 179 ---------------QDPLAYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTV---ETFARTTG-PT 238 (644)
T ss_pred ---------------CCHHHHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHH---HHHhhccC-CC
Confidence 222233332 34445566666676666655222222223333333322222 22222221 11
Q ss_pred cchHHHHHHHH--HhcCCchHHHHHHHHHHhCC-CCCChh--hHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHH
Q 004938 315 LICWSAMISGY--AENNHPQEALKLFNEMQVCG-MKPDKV--TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389 (722)
Q Consensus 315 ~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~ 389 (722)
...-..++.++ ....+.+.|..++....... ..+... ....+.......+..+++...+....... .+..+..
T Consensus 239 ~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e 316 (644)
T PRK11619 239 DFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLE 316 (644)
T ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHH
Confidence 11111111222 12345678888888764432 222211 12222222222222445555554433221 2334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004938 390 AIIDMYAKCGSLESAREVFERMRR--RN-VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL 466 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 466 (722)
.-+......++++.+...|..|.. .+ ..-.-=+..++...|+.++|...|+++.. . .+|..++.+ .+.|.
T Consensus 317 ~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa-~~Lg~ 389 (644)
T PRK11619 317 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAA-QRLGE 389 (644)
T ss_pred HHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHH-HHcCC
Confidence 455555688899988888888864 22 22222345566668999999999988743 1 235554432 22221
Q ss_pred HHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004938 467 VDEGREIFASMTNEYNIPPK-----YEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFA 541 (722)
Q Consensus 467 ~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 541 (722)
.-. +. . ...++. ...-..-+..+...|+..+|...+..+-...+......+...-...|..+.+...
T Consensus 390 ~~~----~~---~-~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 390 EYP----LK---I-DKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred CCC----CC---C-CCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 100 00 0 000000 0011223455677899999998887763234555556666666778888888877
Q ss_pred HHHHHccC---CCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccC
Q 004938 542 AKQLLQLD---PDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587 (722)
Q Consensus 542 ~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 587 (722)
..+....+ -.-+..|......+.+.-..+.+.-.--...|.+..+.
T Consensus 462 ~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 462 TIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 76543211 01223455555555555556655533333346666544
No 427
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.89 E-value=73 Score=21.73 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=19.5
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCcccHHHHHH
Q 004938 93 SWSHRPKHALKVFLKMLNEGLTIDRFSFPPILK 125 (722)
Q Consensus 93 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 125 (722)
.+.|-..++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355556666666666666666665555555443
No 428
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=38.82 E-value=2.2e+02 Score=23.44 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=15.2
Q ss_pred cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 004938 310 MVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCG 345 (722)
Q Consensus 310 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 345 (722)
...+|...|-+|-. .+.|..+++...+.++..+|
T Consensus 66 ~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 66 HCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp S--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred CCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34445555544332 35555555655555555444
No 429
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=38.66 E-value=92 Score=30.44 Aligned_cols=60 Identities=27% Similarity=0.146 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 523 GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 523 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..+-.++.+.++++.|....++.+.++|+++.-..--+-+|.+.|...-|.+-+....+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 445556888999999999999999999999888888899999999999999888876553
No 430
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=38.20 E-value=7e+02 Score=29.03 Aligned_cols=219 Identities=14% Similarity=0.116 Sum_probs=115.0
Q ss_pred HHhcCCchHHHHHHHHHHhCCCCCChh-------hHHHHHH-HHHccCCchHHHHHHHHHHHc----CCCCChhHHHHHH
Q 004938 325 YAENNHPQEALKLFNEMQVCGMKPDKV-------TMLSVIS-ACAHLGVLDQAQRIHLYIDKN----AFGGDLRVNNAII 392 (722)
Q Consensus 325 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~-~~~~~g~~~~a~~i~~~~~~~----~~~~~~~~~~~li 392 (722)
.....++.+|..+..+....-..|+.. .++.+-. .....|+++.+..+-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 456678888888888875542233222 2222222 123567888888887776653 2334566667777
Q ss_pred HHHHhcCCHHHHHHHHHhcCC----CChH---HHHHHHHH--HHHcCCH--HHHHHHHHHHHHc--CCCCC----HHHHH
Q 004938 393 DMYAKCGSLESAREVFERMRR----RNVI---SWTSMINA--FAIHGDA--RNALIFFNKMKDE--SIDPN----GVTFI 455 (722)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~----~~~~---~~~~li~~--~~~~g~~--~~A~~~~~~m~~~--g~~p~----~~t~~ 455 (722)
.+..-.|++++|..+.....+ -++. .|..+..+ +...|+. .+.+..|...... +-+|- ..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 788888999999887766543 2433 34444332 4456632 2333334333221 11222 23455
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHhHhhcCCCCCcch--HHHHHHHHHhcCCHHHHHHHHHhC-----CC--CCCHHHHHHH
Q 004938 456 GVLYACSHA-GLVDEGREIFASMTNEYNIPPKYEH--YGCMVDLFGRANLLREALELVETM-----PF--APNVVIWGSL 525 (722)
Q Consensus 456 ~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~-----~~--~p~~~~~~~l 525 (722)
.++.++.+. +...++..-+.--.. +...|-..- +..|+..+...|++++|...++++ .- .++...-...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~-~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSV-YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhh-cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 555555552 122222222222111 111121111 236777888899999999988887 11 1222221222
Q ss_pred HH--HHHHcCCHHHHHHHHHH
Q 004938 526 MA--ACRVHGEIELAEFAAKQ 544 (722)
Q Consensus 526 l~--~~~~~g~~~~a~~~~~~ 544 (722)
+. .....||.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 23457888888777665
No 431
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.75 E-value=3.4e+02 Score=25.18 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=27.1
Q ss_pred HHhcCCHHHHHHHHHhcCC------CChHHHHHHHH-HHHHcCC--HHHHHHHHHHHHHc
Q 004938 395 YAKCGSLESAREVFERMRR------RNVISWTSMIN-AFAIHGD--ARNALIFFNKMKDE 445 (722)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 445 (722)
....|++++|..-++++.+ +-...|..+.. +++.++. +-+|.-++.-....
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 3445666666666665542 22344555554 5565554 44666666555443
No 432
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.71 E-value=88 Score=29.02 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 004938 448 DPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 448 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
.|+..+|..++.++...|+.++|.+...++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555543
No 433
>PHA02875 ankyrin repeat protein; Provisional
Probab=37.11 E-value=5.2e+02 Score=27.24 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=41.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHh---HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhH--HHHHHHHH
Q 004938 189 MIDGYFQNGLFDEVLNLFEEMKMSNVEPDEM---VLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHL--QSTLITMY 263 (722)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~ 263 (722)
.+...++.|+.+.+..+++. |...+.. .-.+.+...+..|+.+ +.+.+++.|..++... ..+.+...
T Consensus 71 ~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A 142 (413)
T PHA02875 71 ELHDAVEEGDVKAVEELLDL----GKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLA 142 (413)
T ss_pred HHHHHHHCCCHHHHHHHHHc----CCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHH
Confidence 34555677877665555542 2211110 0112333444556654 4445556666554321 22344555
Q ss_pred HhcCChHHHHHHHHhc
Q 004938 264 ANCGCMDMAKGLFDKV 279 (722)
Q Consensus 264 ~~~g~~~~A~~~~~~~ 279 (722)
+..|+.+-+..+++.-
T Consensus 143 ~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 143 VMMGDIKGIELLIDHK 158 (413)
T ss_pred HHcCCHHHHHHHHhcC
Confidence 6677777766666544
No 434
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=37.04 E-value=3.9e+02 Score=25.76 Aligned_cols=58 Identities=9% Similarity=0.039 Sum_probs=34.3
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH-ccCCchHHHHHHHHHHH
Q 004938 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA-HLGVLDQAQRIHLYIDK 378 (722)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~i~~~~~~ 378 (722)
++..+-+.|+++++...++++...+...+..--+.+-.+|- ..|....+.+++..+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 55666778888888888888888766666555555555552 23334445555544433
No 435
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.79 E-value=6.8e+02 Score=28.48 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=53.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNGV--TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 503 (722)
+..-|+-++|-.+.++|.... .|-.. -..++..+|+-.|+.....+++.-... ....|+.-+..+.-.+.-..+.
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecCh
Confidence 334456666667777776542 22111 123344466666666665555554443 2233333333333344444455
Q ss_pred HHHHHHHHhC--CCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 504 REALELVETM--PFAPNVV--IWGSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 504 ~~A~~~~~~~--~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
+.....+.-+ ...|-+. +--+|.-+|.-.|+ .+|..+++-+..
T Consensus 588 ~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 5544444433 1222221 11223333444443 445555555554
No 436
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.78 E-value=5.7e+02 Score=27.51 Aligned_cols=103 Identities=10% Similarity=0.037 Sum_probs=68.8
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCCH--
Q 004938 393 DMYAKCGSLESAREVFERMR---RR---------NVISWTSMINAFAIHGDARNALIFFNKMKD-------ESIDPNG-- 451 (722)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~---~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~-- 451 (722)
..+.-.|++.+|.+++.... .+ .-..||.|.-.+.+.|.+..+..+|.+..+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34556789999998887543 11 224578877777777777777777776653 5666642
Q ss_pred ---------HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH
Q 004938 452 ---------VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498 (722)
Q Consensus 452 ---------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 498 (722)
.+|+ ..-.+.+.|++-.|.+.|....+.| ..++..|--|...+.
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
Confidence 2233 2335778899999999999888744 455567777766654
No 437
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.64 E-value=64 Score=23.47 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 004938 421 SMINAFAIHGDARNALIFFNKMK 443 (722)
Q Consensus 421 ~li~~~~~~g~~~~A~~~~~~m~ 443 (722)
.+|.||.+.|++++|.++.+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555554443
No 438
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.61 E-value=7.7e+02 Score=29.03 Aligned_cols=129 Identities=12% Similarity=0.076 Sum_probs=70.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHh
Q 004938 85 SNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGA 164 (722)
Q Consensus 85 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 164 (722)
|..|+--|...|..++|++++.+.....-.-|.. . . +.-..+.+.+.+.+-+...-++.-. .+.-
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-~---~---------~~~e~ii~YL~~l~~~~~~Li~~y~--~wvl 571 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-Q---L---------DGLEKIIEYLKKLGAENLDLILEYA--DWVL 571 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccc-h---h---------hhHHHHHHHHHHhcccchhHHHHHh--hhhh
Confidence 8889999999999999999999877531101111 0 0 0111233344444422111111110 1112
Q ss_pred CCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 004938 165 CGKILDARLMFDKMSY--RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACS 229 (722)
Q Consensus 165 ~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 229 (722)
..+.+.+.++|-.-.. ....+-.. +-.|......+-++..++.+....-.++..-.+.++..|+
T Consensus 572 ~~~p~~gi~Ift~~~~~~~~sis~~~-Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 572 NKNPEAGIQIFTSEDKQEAESISRDD-VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred ccCchhheeeeeccChhhhccCCHHH-HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 3556677777755111 12222222 3346667778888888888876655666666777776665
No 439
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.54 E-value=3.4e+02 Score=24.92 Aligned_cols=37 Identities=32% Similarity=0.439 Sum_probs=27.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 004938 525 LMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562 (722)
Q Consensus 525 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 562 (722)
.+..|.+.|.+++|.+++++..+ +|++...-..|..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 34568899999999999999988 77766544444433
No 440
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=36.05 E-value=4.7e+02 Score=26.37 Aligned_cols=98 Identities=17% Similarity=0.006 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHhHhhcCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004938 466 LVDEGREIFASMTNEYNI---PPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAA 542 (722)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 542 (722)
-.++|.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+.....+.+....++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 367788888888763111 33455666667777788876665556555554567777888888888888999889999
Q ss_pred HHHHccC-CCCCchHHHHHHHh
Q 004938 543 KQLLQLD-PDHDGALVLLSNIY 563 (722)
Q Consensus 543 ~~~~~~~-p~~~~~~~~l~~~~ 563 (722)
+.++.-+ -........+..+.
T Consensus 225 ~~~l~~~~v~~~d~~~~~~~~~ 246 (324)
T PF11838_consen 225 DLLLSNDKVRSQDIRYVLAGLA 246 (324)
T ss_dssp HHHHCTSTS-TTTHHHHHHHHH
T ss_pred HHHcCCcccccHHHHHHHHHHh
Confidence 9998743 12223444444443
No 441
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=36.04 E-value=4.5e+02 Score=26.10 Aligned_cols=181 Identities=9% Similarity=-0.076 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhcCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 004938 399 GSLESAREVFERMRR-----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH----AGLVDE 469 (722)
Q Consensus 399 g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~ 469 (722)
+.+..|...+..... .....-.....+.....+..+|.++|+.+.+.| +......+...+.. ..+..+
T Consensus 55 ~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~ 131 (292)
T COG0790 55 PDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVK 131 (292)
T ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHH
Q ss_pred HHHHHHHhHhhcCCCCCcchHHHHHHHHHhc-----CCHH--HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 004938 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRA-----NLLR--EALELVETMPFAPNVVIWGSLMAACRV----HGEIELA 538 (722)
Q Consensus 470 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~--~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a 538 (722)
|..+|+.+.+ .|..+.......+...|..- -..+ .|...+.++...-+......|...|.. ..|.++|
T Consensus 132 A~~~~~~Aa~-~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A 210 (292)
T COG0790 132 ALKYYEKAAK-LGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKA 210 (292)
T ss_pred HHHHHHHHHH-cCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHH
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHhhhCC---------------CcchHHHHHHHHHhCCCcc
Q 004938 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDK---------------RWQDVGELRKSMKERGILK 586 (722)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~g~~~ 586 (722)
...|+++-+.+. ......++ ++...| +...|...+......+...
T Consensus 211 ~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 211 FRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
No 442
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=36.01 E-value=50 Score=31.22 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=50.5
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
....++.+.+.+++.+++++-|+....|..++..-.+.|+++.|.+.+++..+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34678999999999999999999999999999999999999999999999887543
No 443
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=35.99 E-value=56 Score=32.24 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=36.1
Q ss_pred HHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 004938 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN 518 (722)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 518 (722)
..+.|+.++|..+|+.+.. --+.++....-+.......+++-+|-.++-+. .+.|.
T Consensus 126 ~~~~Gk~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHhccchHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 3578999999999998875 23334455555555555556666777776655 55553
No 444
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=35.92 E-value=5.6e+02 Score=27.17 Aligned_cols=56 Identities=11% Similarity=0.234 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004938 390 AIIDMYAKCGSLESAREVFERMRRR---NVISWTSMINAFAIHGDARNALIFFNKMKDE 445 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 445 (722)
.|+.-|...|++.+|...+.++.-| ..+.+.+++.+.-+.|+....+.++++.-..
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s 572 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS 572 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3455555666666666666655433 3345555555555555555444444444333
No 445
>PF15469 Sec5: Exocyst complex component Sec5
Probab=35.49 E-value=3.5e+02 Score=24.73 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHh
Q 004938 456 GVLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 456 ~ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
.-|.-|.+.|+++.+...|..+..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 345556667777777777766654
No 446
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.41 E-value=40 Score=28.88 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=24.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004938 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 461 (722)
...|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456777889999999999999885 55565543
No 447
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.26 E-value=73 Score=31.63 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 458 (722)
.-|+..|....+.|+.++|+.++++..+.|+.--..||..-+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 346788888889999999999999999988776666665444
No 448
>PF15161 Neuropep_like: Neuropeptide-like
Probab=35.02 E-value=24 Score=24.48 Aligned_cols=17 Identities=35% Similarity=0.854 Sum_probs=12.2
Q ss_pred cccccCcchhHHHHHHhh
Q 004938 677 KNLRVCEDCHNFIKLVSK 694 (722)
Q Consensus 677 ~nl~~~~~~~~~~~~~s~ 694 (722)
---|-|.|||.+. |+.+
T Consensus 11 aesRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCCchhhHHHH-HHHH
Confidence 3468899999765 5554
No 449
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.97 E-value=67 Score=31.86 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 004938 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSK 223 (722)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 223 (722)
||..|....+.|++++|+.++++..+.|+.--..||..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 77788888888888888888888887776654444443
No 450
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=33.70 E-value=5e+02 Score=26.01 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHcCCHHHH
Q 004938 521 IWGSLMAACRVHGEIELA 538 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a 538 (722)
.|.-|+.+++..|+.+..
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 344555555555554433
No 451
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=32.80 E-value=4.4e+02 Score=25.06 Aligned_cols=125 Identities=16% Similarity=0.118 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHH
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGC 492 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 492 (722)
|.+..++.+.+.+...+|+...++-++. +|.. -+-..++..++-.|++++|..-++...+ +.|+ ...|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHH
Confidence 3455566777788888888888776664 4543 4455666777888888888877766543 2232 334444
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCC-----CHHHHHH-HHHHHH--HcCCHHHHHHHHHHHHccCCCCCc
Q 004938 493 MVDLFGRANLLREALELVETMPFAP-----NVVIWGS-LMAACR--VHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~~~~p-----~~~~~~~-ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
+|.. +.+..-+-.-+..| ....|.. |+.+.. ..|.-+.+..+-+++++..|..++
T Consensus 78 lir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 78 LIRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 4432 22222221111111 1233433 333322 233455566666777777776543
No 452
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=32.58 E-value=9.3e+02 Score=28.78 Aligned_cols=150 Identities=7% Similarity=-0.007 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc---CCCCCc--------chHHHHHHHHH
Q 004938 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY---NIPPKY--------EHYGCMVDLFG 498 (722)
Q Consensus 430 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~~--------~~~~~li~~~~ 498 (722)
|..---.++|++..+ .+|-.+...+....+..|.++-+.+..+.+.+.+ ..+.+. .+|-.=+.++.
T Consensus 670 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (932)
T PRK13184 670 GFTPFLPELFQRAWD---LRDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALS 746 (932)
T ss_pred cCchhhHHHHHHHhh---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHH
Confidence 334444455555544 3344555566666778898888877777666421 111111 11222245556
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC---chHHHHHHHhhhCCCcchHHHH
Q 004938 499 RANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD---GALVLLSNIYAKDKRWQDVGEL 575 (722)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~ 575 (722)
....++++.+.+...+...-...+..++.-+..+++.+.-..+.+.+....+... .....-+.+|.-..+|++|.++
T Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (932)
T PRK13184 747 NKEDYEKAFKHLDNTDPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKL 826 (932)
T ss_pred ccccHHHHHhhhhhCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHH
Confidence 6667788887766653111123444455555667777766666666655443322 1223456667778899999998
Q ss_pred HHHHHhC
Q 004938 576 RKSMKER 582 (722)
Q Consensus 576 ~~~m~~~ 582 (722)
+..--+.
T Consensus 827 ~~~~~~~ 833 (932)
T PRK13184 827 LNRYPLD 833 (932)
T ss_pred HHhCChh
Confidence 8655443
No 453
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=32.09 E-value=1.4e+02 Score=23.64 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=13.9
Q ss_pred CHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 004938 299 QVEDARLIFDQMVEKDLICWSAMISGYAE 327 (722)
Q Consensus 299 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 327 (722)
+.+.+.++++.++.++..+|..+..++-.
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 34444444555555555555555554433
No 454
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=32.00 E-value=3e+02 Score=22.88 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=12.4
Q ss_pred HHHHHHHHHccCCCCCchHHHHHH
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSN 561 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~ 561 (722)
+.+.+.+...+.|+.+..+..|++
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~ 86 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELAS 86 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHH
Confidence 445555666666655444444443
No 455
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.37 E-value=2.8e+02 Score=29.16 Aligned_cols=54 Identities=9% Similarity=0.125 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhcc-----------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 004938 289 AMVSGYSRAGQVEDARLIFDQM-----------VEKDLICWSAMISGYAENNHPQEALKLFNEMQ 342 (722)
Q Consensus 289 ~li~~~~~~g~~~~A~~~f~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 342 (722)
.|++.++-.|++..|+++++.+ +.-.+.++.-+.-+|.-.+++.+|++.|...+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544 22245567777788888888888888887764
No 456
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=30.95 E-value=6.5e+02 Score=26.46 Aligned_cols=52 Identities=25% Similarity=0.264 Sum_probs=38.0
Q ss_pred CCcchHHHHHHHHHhc---CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 004938 313 KDLICWSAMISGYAEN---NHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364 (722)
Q Consensus 313 ~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 364 (722)
++-..+..+|+++.+. .+.+.|+-++-+|.+.|-.|-...-..++-+....|
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 3556677788888665 689999999999999997676665555555555444
No 457
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.34 E-value=1.1e+03 Score=28.72 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELVET 512 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 512 (722)
|..++..+-..+..+++.++-..+++ .++++ ..+++++.+-....|.+-+|...+-+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~ 1046 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR 1046 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc
Confidence 44455555555555555555555554 22222 22344555555555555555555544
No 458
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.05 E-value=2.7e+02 Score=21.77 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=30.3
Q ss_pred HhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHH
Q 004938 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 435 (722)
+...+.+.|.++++.++.++..+|.+...++...|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3455678888888888888888888888888777765544
No 459
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=30.04 E-value=3.4e+02 Score=22.94 Aligned_cols=22 Identities=5% Similarity=-0.228 Sum_probs=13.5
Q ss_pred HHHHHhhhCCCcchHHHHHHHH
Q 004938 558 LLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 558 ~l~~~~~~~g~~~~a~~~~~~m 579 (722)
.-+.++...|+.++|.+.|+..
T Consensus 105 sra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 105 SRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHH
Confidence 3445566677777777777654
No 460
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=29.94 E-value=2.9e+02 Score=30.14 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHH---HHHHHHHHccCChHHHHHHHHHHHHc
Q 004938 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL---SKILSACSRAGNLSYGEAVHEFIIDN 247 (722)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~ 247 (722)
-..++.-|.+.+++++|+.++..|.-.-. ....| +.+.+...+..--++.+..++.++..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~--g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTM--GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCcccc--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 45677778888888888888877754321 12222 33333444444334444444544443
No 461
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=29.83 E-value=35 Score=18.31 Aligned_cols=12 Identities=33% Similarity=0.648 Sum_probs=9.1
Q ss_pred cchhHHHHHHhh
Q 004938 683 EDCHNFIKLVSK 694 (722)
Q Consensus 683 ~~~~~~~~~~s~ 694 (722)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 457888888874
No 462
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.76 E-value=3.7e+02 Score=30.43 Aligned_cols=27 Identities=15% Similarity=0.042 Sum_probs=16.0
Q ss_pred cCcchhHHHHHHhhhcCceEEEecCCc
Q 004938 681 VCEDCHNFIKLVSKVYAREIVIRDRTR 707 (722)
Q Consensus 681 ~~~~~~~~~~~~s~~~~~~~~~~~~~~ 707 (722)
.|..-|++.--.|.|-|-.+-=||-|.
T Consensus 490 ~~k~ih~w~F~assIk~Vs~sKrddRc 516 (1226)
T KOG4279|consen 490 KLKGIHRWHFAASSIKGVSESKRDDRC 516 (1226)
T ss_pred hhcCceeeeeehhceecccccccccce
Confidence 355666666666666666665565443
No 463
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.56 E-value=6e+02 Score=25.59 Aligned_cols=79 Identities=10% Similarity=-0.001 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHcCC----CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004938 367 DQAQRIHLYIDKNAF----GGDLRVNNAIIDMYAKCGSLESAREVFERMRR-RNVISWTSMINAFAIHGDARNALIFFNK 441 (722)
Q Consensus 367 ~~a~~i~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 441 (722)
+.+.+.+......+. ..+......+.....+.|..+.-..+++.... ++......++.+++...+.+...++++.
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~ 226 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDL 226 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHH
Confidence 445555555554311 23344444555555555655544444444443 3445556666666666666665666665
Q ss_pred HHHc
Q 004938 442 MKDE 445 (722)
Q Consensus 442 m~~~ 445 (722)
....
T Consensus 227 ~l~~ 230 (324)
T PF11838_consen 227 LLSN 230 (324)
T ss_dssp HHCT
T ss_pred HcCC
Confidence 5553
No 464
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=29.29 E-value=5.2e+02 Score=26.15 Aligned_cols=131 Identities=17% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH-hcCCHHHHHH
Q 004938 430 GDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG-RANLLREALE 508 (722)
Q Consensus 430 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~ 508 (722)
++.+....++..+.+.+..| +++.+.+...+.-|...++.|...=. +...++++++
T Consensus 36 ~~~~~~e~l~~~Ird~~Map-----------------------~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~ie 92 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAP-----------------------LYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIE 92 (393)
T ss_pred cCHHHHHHHHHHHHhcccch-----------------------HHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc------cCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 509 LVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ------LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 509 ~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
-.++- |..--...|.....-|++-||.+.|++.+.+..+ ..-+-..+...++-.|....-..+-.+..+.+.+
T Consensus 93 daeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE 172 (393)
T KOG0687|consen 93 DAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIE 172 (393)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q ss_pred CC
Q 004938 582 RG 583 (722)
Q Consensus 582 ~g 583 (722)
+|
T Consensus 173 ~G 174 (393)
T KOG0687|consen 173 EG 174 (393)
T ss_pred hC
No 465
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=29.08 E-value=3.3e+02 Score=23.23 Aligned_cols=67 Identities=10% Similarity=0.163 Sum_probs=42.3
Q ss_pred HHHHHHHhC-CCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHc--cCCCCCchHHHHHHHhhhCCCcchHHHHHH
Q 004938 505 EALELVETM-PFAPNV---VIWGSLMAACRVHGEIELAEFAAKQLLQ--LDPDHDGALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 505 ~A~~~~~~~-~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
++.+.|... ..+.|+ ..|-..+..| + ...++|+.+.. ++-..+..|...+..+...|++.+|.++++
T Consensus 51 rc~~~f~~~~~YknD~RyLkiWi~ya~~~---~---dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 51 RCIRYFEDDERYKNDPRYLKIWLKYADNC---D---EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhc---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444333 234454 3455555443 2 35667777765 345566677888899999999999999886
No 466
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.60 E-value=5.5e+02 Score=24.88 Aligned_cols=63 Identities=19% Similarity=0.118 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 491 GCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 491 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
..+...+...|++-++++--.+. ...| ++..|-.-..|....-+.++|..-+.++++++|.-.
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 33444555566666666666555 3334 445666666667777789999999999999999644
No 467
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.47 E-value=2.2e+02 Score=28.14 Aligned_cols=111 Identities=14% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHhHhhc-------CCCCCcchHHHHHHHHH-hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004938 473 IFASMTNEY-------NIPPKYEHYGCMVDLFG-RANLLREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAK 543 (722)
Q Consensus 473 ~~~~~~~~~-------~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 543 (722)
++..+.+++ -++-|...++.|+.--. +...++++++-.++- +..-....|..+..-|++-++.+.+.+...
T Consensus 60 lYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~ 139 (412)
T COG5187 60 LYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMR 139 (412)
T ss_pred HHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q ss_pred HHHc------cCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 544 QLLQ------LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 544 ~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
+.++ +.-+---.-..|+-+|....-.++-.+..+.|.++|
T Consensus 140 ~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 140 RLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
No 468
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=28.32 E-value=3.8e+02 Score=22.89 Aligned_cols=60 Identities=12% Similarity=0.048 Sum_probs=35.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHH
Q 004938 486 KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIW-GSLMAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~ 545 (722)
...+-.++..++.=.|..++|.++++..+..++-... .-++..|+...+-++..++-++.
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3344456666666677777777777776544443333 34666666666665555554443
No 469
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=28.15 E-value=1.1e+03 Score=28.01 Aligned_cols=69 Identities=4% Similarity=-0.070 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH
Q 004938 435 ALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503 (722)
Q Consensus 435 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 503 (722)
-.+.|.++..---.-|..++..-..-....|++..+.+++.++.++.+-.++..+|..+++.+...|.-
T Consensus 1215 ~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1215 YNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred HHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 344444444321122333333333344455667777777777776666667777776666666666644
No 470
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=28.13 E-value=6.5e+02 Score=25.58 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh---cCCHHHHH
Q 004938 432 ARNALIFFNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR---ANLLREAL 507 (722)
Q Consensus 432 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~ 507 (722)
.+.-+.++++.++. .|+. ......+..+.+....++..+-|+.+... .+-+...|...++.... .-.+++..
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 56677889998886 4554 46777888888888999999999999873 34466777777765543 23455666
Q ss_pred HHHHhC-------CCCC----------CHHHHHHHHH---HHHHcCCHHHHHHHHHHHHccC
Q 004938 508 ELVETM-------PFAP----------NVVIWGSLMA---ACRVHGEIELAEFAAKQLLQLD 549 (722)
Q Consensus 508 ~~~~~~-------~~~p----------~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~ 549 (722)
++|.+. .... +......++. -++..|..+.|..+++-+++++
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 555543 2221 1122222233 3457899999999999998876
No 471
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.11 E-value=2.7e+02 Score=30.94 Aligned_cols=46 Identities=9% Similarity=-0.130 Sum_probs=23.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCC--CCchhhHHHHHHHHHhCCC
Q 004938 122 PILKAIARAEGLLEGMQVHGLGTKLGF--GSDPFVQTGLVGMYGACGK 167 (722)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~ 167 (722)
+++.+|...|++.++.++++......- ..=...+|..|+-+.+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 566666666666666666666554321 1112234444444445554
No 472
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=28.05 E-value=9.2e+02 Score=27.28 Aligned_cols=41 Identities=20% Similarity=0.141 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcc---cCCchHHHHHHHHHHh
Q 004938 256 QSTLITMYANCGCMDMAKGLFDKVL---LKNLVVSTAMVSGYSR 296 (722)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 296 (722)
.-++|--+.++|++++|.++.++.. ......+...+..|..
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHh
Confidence 3356666777777777777763322 2223344444444433
No 473
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.70 E-value=6.1e+02 Score=25.12 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=63.1
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCCCChhh-------HHHHHHHHHccCCchHHHHHHHHHHH----cCCCCChhHHH
Q 004938 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKVT-------MLSVISACAHLGVLDQAQRIHLYIDK----NAFGGDLRVNN 389 (722)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~g~~~~a~~i~~~~~~----~~~~~~~~~~~ 389 (722)
+..-..+.+++++|+..+.+....|+..|..+ ...+...|.+.|+...-.+......+ ..-+..+.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 34455677889999999999998888766544 44555666666666554443332221 11122344445
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhcCC---C-C-h----HHHHHHHHHHHHcCCHHHHHHHHH
Q 004938 390 AIIDMYAKC-GSLESAREVFERMRR---R-N-V----ISWTSMINAFAIHGDARNALIFFN 440 (722)
Q Consensus 390 ~li~~~~~~-g~~~~A~~~~~~~~~---~-~-~----~~~~~li~~~~~~g~~~~A~~~~~ 440 (722)
+|++.+... ..++.-.++.....+ + + . ..-.-+|..+.+.|.+.+|+.+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 555554432 234444444444332 0 0 0 111224455556666666655443
No 474
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.60 E-value=8.9e+02 Score=26.96 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=10.2
Q ss_pred hcCChHHHHHHHHHHHH
Q 004938 129 RAEGLLEGMQVHGLGTK 145 (722)
Q Consensus 129 ~~~~~~~a~~~~~~~~~ 145 (722)
..++++.|...+..+.+
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 44566666666666555
No 475
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=27.56 E-value=1.2e+02 Score=30.10 Aligned_cols=76 Identities=11% Similarity=0.043 Sum_probs=47.3
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHH
Q 004938 483 IPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGS-LMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558 (722)
Q Consensus 483 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 558 (722)
.+.|+..|...+.--.+.|.+.+.-.++.+. ...| |+..|-. ----+..+++++.+..++.+.+.++|++|..+..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 3444555554444444555555655666555 3334 4556643 1222457889999999999999999998876653
No 476
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.45 E-value=9.4e+02 Score=28.11 Aligned_cols=131 Identities=15% Similarity=0.191 Sum_probs=85.6
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004938 394 MYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 473 (722)
....||+++.|.+.-..+- +...|..|.......|+.+-|...|++... |.-|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3457899999988776664 556899999999999999999999987654 22222234456777776665
Q ss_pred HHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004938 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548 (722)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 548 (722)
-+.+..+ .|.. .....-.-.|+.++-.++++..+..|- .|. .-..+|.-++|.++.++.-..
T Consensus 721 ~~iae~r----~D~~---~~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 721 MKIAEIR----NDAT---GQFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHhh----hhhH---HHHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhccc
Confidence 5544332 2211 111111225888888888888865442 221 134688889999988887663
No 477
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=27.38 E-value=66 Score=24.63 Aligned_cols=26 Identities=42% Similarity=0.588 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhhCCcccCCccc
Q 004938 613 DQIYEKLNEVISELKPAGYVPDIHSA 638 (722)
Q Consensus 613 ~~i~~~l~~l~~~~~~~g~~pd~~~~ 638 (722)
.++.+.+++...+++..|+.||...+
T Consensus 8 i~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 46778888899999999999998654
No 478
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.34 E-value=3.9e+02 Score=22.74 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 004938 434 NALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREIFAS 476 (722)
Q Consensus 434 ~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 476 (722)
++.++|+.|...|+--... -|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7777777777776655533 455556666677777777777654
No 479
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.24 E-value=1.3e+02 Score=21.76 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 004938 450 NGVTFIGVLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 450 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
|-.--..++.++...|++++|.++.+.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333445567777778888888777777665
No 480
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.19 E-value=70 Score=35.70 Aligned_cols=90 Identities=8% Similarity=-0.136 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 004938 84 VSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYG 163 (722)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 163 (722)
.|..-+.-+...++.. ....+..+.+-+-.+...-.-++..|.+.|-.+.+..+...+-..-.. ..-|..-+..+.
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ 449 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFI 449 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHH
Confidence 3555554444433222 444444444333334445555666666666666666666544333211 123445555666
Q ss_pred hCCCHHHHHHHHhc
Q 004938 164 ACGKILDARLMFDK 177 (722)
Q Consensus 164 ~~g~~~~A~~~f~~ 177 (722)
++|+.+....+-+.
T Consensus 450 ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 450 RAGDYSLVTRIADR 463 (566)
T ss_dssp --------------
T ss_pred HCCCHHHHHHHHHH
Confidence 66666555544443
No 481
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=27.15 E-value=6.4e+02 Score=25.14 Aligned_cols=67 Identities=4% Similarity=-0.043 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 447 IDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 447 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
-.++..+...++..++..+++.+-.++++......+...|...|...+......|+..-...++++-
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 4556666666677777777777777776665542234445666677777766677666666666553
No 482
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=27.15 E-value=22 Score=26.09 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=16.8
Q ss_pred ceEEEecCCccccccCCccCCC
Q 004938 698 REIVIRDRTRFHHYKDGVCSCK 719 (722)
Q Consensus 698 ~~~~~~~~~~~h~~~~g~csc~ 719 (722)
..|=+.|.+..|+|+||+-+-.
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 3567889999999999986543
No 483
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=26.89 E-value=6.9e+02 Score=25.43 Aligned_cols=115 Identities=10% Similarity=0.012 Sum_probs=58.1
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH---cCCHHHHHHHH
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRV---HGEIELAEFAA 542 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~ 542 (722)
+.-+.+++++.+. .+.+......++..+.+....++..+-++++ ...| +...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 3445555555552 2334455555556666666666656666555 2223 45566666665443 22355555555
Q ss_pred HHHHccC-----------CCCC-------chHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 543 KQLLQLD-----------PDHD-------GALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 543 ~~~~~~~-----------p~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
.+.+..- ++.+ ..+..+......+|-.+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 5544310 0000 1222344445566666666666666666655
No 484
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=26.27 E-value=2.3e+02 Score=22.27 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=14.1
Q ss_pred CCHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 004938 298 GQVEDARLIFDQMVEKDLICWSAMISGYAEN 328 (722)
Q Consensus 298 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 328 (722)
.+.++|..+++.++.++..+|.....++-..
T Consensus 42 t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~ 72 (86)
T cd08323 42 TQKEKAVMLINMILTKDNHAYVSFYNALLHE 72 (86)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3344444444444444444444444444433
No 485
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=26.25 E-value=4e+02 Score=22.54 Aligned_cols=66 Identities=24% Similarity=0.215 Sum_probs=39.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCC---CcchHHHHH----HH
Q 004938 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK---DLICWSAMI----SG 324 (722)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li----~~ 324 (722)
|...+..|-.++.+.|++++++.- .+.|+..|++--+- .-..|-..+ .+
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~s------------------------A~~aL~YFNRRGEL~qdeGklWIaaVfsra~A 109 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQS------------------------ADRALRYFNRRGELHQDEGKLWIAAVFSRAVA 109 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHH------------------------HHHHHHHHHHH--TTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHH------------------------HHHHHHHHhhccccccccchhHHHHHHHHHHH
Confidence 456677788888888988887766 34455556554322 222343332 35
Q ss_pred HHhcCCchHHHHHHHHH
Q 004938 325 YAENNHPQEALKLFNEM 341 (722)
Q Consensus 325 ~~~~g~~~~A~~~~~~m 341 (722)
+-..|+.++|+..|+..
T Consensus 110 l~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 110 LEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHH
Confidence 66678888888877653
No 486
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.99 E-value=3e+02 Score=24.15 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=36.1
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 004938 206 FEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269 (722)
Q Consensus 206 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 269 (722)
...+++.|++++..-. .++......++.-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 9 ~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 9 IERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 3444556665554332 34455555555566777777777766666555555555666666643
No 487
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.67 E-value=7.9e+02 Score=25.74 Aligned_cols=55 Identities=7% Similarity=-0.078 Sum_probs=31.8
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCCCChh--hHHHHHHHHHc--cCCchHHHHHHHHHHHc
Q 004938 324 GYAENNHPQEALKLFNEMQVCGMKPDKV--TMLSVISACAH--LGVLDQAQRIHLYIDKN 379 (722)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~--~g~~~~a~~i~~~~~~~ 379 (722)
.+.+.+++..|.++|+++... ++++.. .+..+..+|.. .-++++|...++...+.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677888888888888775 444443 23333344432 34556666666655543
No 488
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.15 E-value=2.7e+02 Score=24.42 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCccc
Q 004938 86 NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS 119 (722)
Q Consensus 86 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 119 (722)
-.++..+.+.+.+-.|.++|+++.+.++..+..|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 3445555555555555555555555544444333
No 489
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.70 E-value=3.5e+02 Score=30.12 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=28.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCC------chHHHHHHHHHHhcCCH
Q 004938 258 TLITMYANCGCMDMAKGLFDKVLLKN------LVVSTAMVSGYSRAGQV 300 (722)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~ 300 (722)
+|..+|...|++-.+..+++.....+ ...+|..|+.+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 77888888888888888877664331 23456666666666654
No 490
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.55 E-value=2.9e+02 Score=24.99 Aligned_cols=46 Identities=9% Similarity=-0.007 Sum_probs=23.5
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 004938 86 NKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAE 131 (722)
Q Consensus 86 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 131 (722)
..++..+...++.-.|.++++.+.+.+..++..|.--.|..+.+.|
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3444444444555556666666665555555554444444444433
No 491
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.18 E-value=82 Score=31.78 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=70.5
Q ss_pred hcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHH
Q 004938 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVV-IWGSLMAACRVHGEIELAEF 540 (722)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~ 540 (722)
..|.+++|++.|...+. .-++....|..-..++.+.++...|+.-+... .+.||.. -|-.-..+.+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 45667777777776665 34445556666666677777777777666555 5556542 33333445566788888888
Q ss_pred HHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 541 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.++.+.+++-+.. +-..|-.+.-.++..++-...+++.++.
T Consensus 204 dl~~a~kld~dE~-~~a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 204 DLALACKLDYDEA-NSATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHhccccHH-HHHHHHHhccchhhhhhchhHHHHHHHH
Confidence 8888877765432 3334445555556555555555554443
No 492
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=24.16 E-value=6.1e+02 Score=25.49 Aligned_cols=41 Identities=7% Similarity=0.065 Sum_probs=19.4
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 004938 104 VFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144 (722)
Q Consensus 104 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 144 (722)
+++.|.+.++.|.-++|.=+.-.+++.=.+.+...+++.+.
T Consensus 265 L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 265 LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 44444444555555444444444444444445555555443
No 493
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=23.75 E-value=1.4e+02 Score=31.65 Aligned_cols=80 Identities=14% Similarity=0.045 Sum_probs=32.8
Q ss_pred HhcCCHHHHHHHHHhcCC--CChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 004938 396 AKCGSLESAREVFERMRR--RNVI-SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGR 471 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~ 471 (722)
.+.+.++.|..++.+..+ ||-. .|..-..++.+.+++..|+.=+.+.++. .|... .|..-..+|...+...+|.
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHHHHHHHH
Confidence 344445555555544443 2222 2222224444455555555444444442 23321 2333333444444444444
Q ss_pred HHHHHh
Q 004938 472 EIFASM 477 (722)
Q Consensus 472 ~~~~~~ 477 (722)
..|+..
T Consensus 93 ~~l~~~ 98 (476)
T KOG0376|consen 93 LDLEKV 98 (476)
T ss_pred HHHHHh
Confidence 444443
No 494
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=23.68 E-value=4.1e+02 Score=21.76 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=10.3
Q ss_pred HHHHHHhCCChhHHHHHHHHH
Q 004938 189 MIDGYFQNGLFDEVLNLFEEM 209 (722)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m 209 (722)
++..|...+++++|.+.+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 344444455555555555444
No 495
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.50 E-value=2.8e+02 Score=25.10 Aligned_cols=60 Identities=10% Similarity=0.048 Sum_probs=33.5
Q ss_pred HHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 004938 209 MKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269 (722)
Q Consensus 209 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 269 (722)
+++.|++++..-. .++.......+.-.|.++++.+.+.+...+..|.-.-++.+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3455665554443 33334433444556677777777666655655555556666666654
No 496
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=23.27 E-value=6.6e+02 Score=25.85 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCc--chH
Q 004938 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHK--QTD 613 (722)
Q Consensus 536 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~--~~~ 613 (722)
|..+++.-++--.+|+|+.....+ +|.+++++++++|-. ..-...+|+.... .-.
T Consensus 28 e~vl~AA~~l~laDPeDSD~N~if-----------~avkiydeL~~~Ged------------veVA~VsG~~~~~v~ad~ 84 (344)
T PF04123_consen 28 EAVLDAAVKLALADPEDSDVNAIF-----------GAVKIYDELKAEGED------------VEVAVVSGSPDVGVEADR 84 (344)
T ss_pred HHHHHHHHHHhcCCcccccHHHHH-----------HHHHHHHHHHhcCCC------------eEEEEEECCCCCchhhHH
Confidence 455666666777899998776655 588999999998752 2234556654432 234
Q ss_pred HHHHHHHHHHHHHhhCCcccCCcccccccchHH
Q 004938 614 QIYEKLNEVISELKPAGYVPDIHSALVDLEDEE 646 (722)
Q Consensus 614 ~i~~~l~~l~~~~~~~g~~pd~~~~~~~~~~~~ 646 (722)
++.++++++.++ +.||...+..|-.++|
T Consensus 85 ~I~~qld~vl~~-----~~~~~~i~VsDGaeDE 112 (344)
T PF04123_consen 85 KIAEQLDEVLSK-----FDPDSAIVVSDGAEDE 112 (344)
T ss_pred HHHHHHHHHHHh-----CCCCEEEEEecChhhh
Confidence 455566655544 5566555555555443
No 497
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.26 E-value=4.3e+02 Score=23.16 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=38.8
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHcc-CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 004938 208 EMKMSNVEPDEMVLSKILSACSRA-GNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269 (722)
Q Consensus 208 ~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 269 (722)
.+.+.|++++..-.. ++...... +..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 7 ~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 355667776655433 34444433 45667888888888887766766666666777776644
No 498
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=22.55 E-value=9.4e+02 Score=25.52 Aligned_cols=121 Identities=14% Similarity=0.042 Sum_probs=56.0
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004938 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462 (722)
Q Consensus 383 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 462 (722)
++..+-..-+.++++.+..+..-.+..-....|...-..-+.+....|. ++|......... .|+......+.....
T Consensus 159 ~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~la 234 (410)
T TIGR02270 159 EDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLA 234 (410)
T ss_pred CCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHH
Confidence 3333444444444444443322222222334555555555555555665 455554444322 222222222222222
Q ss_pred hcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 004938 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMP 514 (722)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 514 (722)
..| .+++.+.+..+.++ +. +-...+.++++.|+..-+.-+++.|.
T Consensus 235 l~~-~~~a~~~L~~ll~d----~~--vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 235 VAG-GPDAQAWLRELLQA----AA--TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred hCC-chhHHHHHHHHhcC----hh--hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 222 22555555555442 21 44556666777777776666666664
No 499
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=22.47 E-value=9.1e+02 Score=25.28 Aligned_cols=52 Identities=12% Similarity=-0.053 Sum_probs=30.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHH--hcCCHHHHHHHHHH
Q 004938 425 AFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY----ACS--HAGLVDEGREIFAS 476 (722)
Q Consensus 425 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----a~~--~~g~~~~a~~~~~~ 476 (722)
.+...+++..|.++|+++....+.|+...+...+. +|. ..-++++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34456778888888888887755555444333322 222 34566677776663
No 500
>PF13934 ELYS: Nuclear pore complex assembly
Probab=22.27 E-value=6.9e+02 Score=23.87 Aligned_cols=115 Identities=16% Similarity=0.138 Sum_probs=53.4
Q ss_pred cCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004938 398 CGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASM 477 (722)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 477 (722)
.+++++|.+.+-.-.-. .....-++.++...|+.+.|+.+++.+.-..-. ......++.+ ...+.+.+|..+-+..
T Consensus 91 ~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s--~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 91 HGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSS--PEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred hHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCC--HHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 35555665555332111 011123566666677777777776654321111 1112222222 4456777777665544
Q ss_pred HhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHH
Q 004938 478 TNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVV 520 (722)
Q Consensus 478 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~ 520 (722)
... -....+..++..+.....-....+.+-.+|+.+...
T Consensus 167 ~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 167 PDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred chh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 331 113355556655554332233344444556655443
Done!