Query 004938
Match_columns 722
No_of_seqs 853 out of 5093
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 10:24:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.3E-43 4.4E-48 398.6 36.7 491 65-564 67-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.1E-39 7.1E-44 364.3 38.8 479 93-583 64-580 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2E-25 6.7E-30 236.1 41.8 369 191-568 7-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 99.9 1.5E-24 5.2E-29 229.3 41.2 350 225-582 6-368 (388)
5 4g26_A Pentatricopeptide repea 99.9 3.6E-27 1.2E-31 254.1 20.4 183 316-499 27-222 (501)
6 4g26_A Pentatricopeptide repea 99.9 3.8E-27 1.3E-31 254.0 19.3 185 82-266 26-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 2E-22 6.8E-27 221.3 34.6 446 83-559 7-489 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.3E-22 7.8E-27 220.8 32.6 262 316-583 187-479 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.1E-21 7E-26 209.5 34.3 319 252-578 25-405 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 9.5E-21 3.2E-25 204.2 35.1 360 185-571 28-443 (450)
11 3fp2_A TPR repeat-containing p 99.9 1.2E-20 3.9E-25 208.6 34.8 418 152-583 25-492 (537)
12 3fp2_A TPR repeat-containing p 99.9 1.6E-20 5.5E-25 207.4 34.5 438 82-557 25-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 7.5E-18 2.6E-22 175.1 32.6 303 252-582 2-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 8.2E-18 2.8E-22 174.8 32.0 320 217-565 2-352 (359)
15 1xi4_A Clathrin heavy chain; a 99.8 4.4E-15 1.5E-19 169.0 49.5 485 25-575 855-1377(1630)
16 3hym_B Cell division cycle pro 99.8 4.7E-17 1.6E-21 167.0 30.9 289 250-570 19-322 (330)
17 2ooe_A Cleavage stimulation fa 99.8 6E-16 2.1E-20 170.3 39.1 407 150-582 11-492 (530)
18 1b89_A Protein (clathrin heavy 99.8 6.9E-18 2.4E-22 173.1 21.7 320 164-550 15-343 (449)
19 1fch_A Peroxisomal targeting s 99.8 1.4E-17 4.6E-22 174.2 23.8 276 297-578 38-355 (368)
20 1b89_A Protein (clathrin heavy 99.8 5.5E-18 1.9E-22 173.8 20.0 217 65-310 17-233 (449)
21 3hym_B Cell division cycle pro 99.8 6.6E-17 2.2E-21 165.9 28.3 265 313-582 20-299 (330)
22 2xm6_A Protein corresponding t 99.8 1.4E-15 4.7E-20 165.6 39.9 319 231-565 92-452 (490)
23 2ooe_A Cleavage stimulation fa 99.8 1.8E-15 6.3E-20 166.4 39.7 410 182-624 12-494 (530)
24 2xm6_A Protein corresponding t 99.8 9.5E-15 3.3E-19 159.0 41.8 361 203-584 27-434 (490)
25 1xi4_A Clathrin heavy chain; a 99.8 6.5E-14 2.2E-18 159.5 49.2 349 186-577 988-1340(1630)
26 4eqf_A PEX5-related protein; a 99.7 3.1E-17 1.1E-21 171.4 19.3 259 314-578 64-352 (365)
27 3mkr_A Coatomer subunit epsilo 99.7 7.3E-16 2.5E-20 154.8 26.2 268 294-575 9-287 (291)
28 4g1t_A Interferon-induced prot 99.7 1.2E-14 4.1E-19 157.4 33.4 328 252-593 93-470 (472)
29 1fch_A Peroxisomal targeting s 99.7 8.6E-16 3E-20 160.4 23.5 127 416-546 217-357 (368)
30 3cv0_A Peroxisome targeting si 99.7 5.4E-16 1.8E-20 158.9 21.2 260 315-579 21-312 (327)
31 4eqf_A PEX5-related protein; a 99.7 3E-16 1E-20 163.9 18.9 231 349-582 64-310 (365)
32 3mkr_A Coatomer subunit epsilo 99.7 2.4E-15 8.2E-20 151.0 21.3 247 322-583 6-265 (291)
33 4g1t_A Interferon-induced prot 99.7 3.5E-14 1.2E-18 153.8 28.6 377 153-560 52-471 (472)
34 3cv0_A Peroxisome targeting si 99.6 2.8E-15 9.6E-20 153.5 18.3 270 253-550 21-317 (327)
35 3spa_A Mtrpol, DNA-directed RN 99.6 9.4E-17 3.2E-21 177.2 7.4 131 149-279 124-262 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.6 3E-16 1E-20 173.3 7.6 151 316-501 128-286 (1134)
37 3uq3_A Heat shock protein STI1 99.6 4.7E-14 1.6E-18 138.8 21.5 214 356-582 11-236 (258)
38 2pl2_A Hypothetical conserved 99.6 4.1E-14 1.4E-18 135.5 20.0 194 382-579 2-211 (217)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 7.3E-14 2.5E-18 139.0 20.4 241 327-576 17-269 (275)
40 3uq3_A Heat shock protein STI1 99.6 5.4E-14 1.8E-18 138.4 19.1 234 316-562 6-256 (258)
41 3u4t_A TPR repeat-containing p 99.6 1E-13 3.4E-18 137.9 19.7 243 288-566 7-268 (272)
42 3e4b_A ALGK; tetratricopeptide 99.5 8.3E-13 2.8E-17 141.5 20.7 377 158-581 9-420 (452)
43 2ho1_A Type 4 fimbrial biogene 99.5 3.1E-12 1E-16 125.5 22.9 166 388-555 74-245 (252)
44 3e4b_A ALGK; tetratricopeptide 99.5 2.9E-12 1E-16 137.2 24.3 342 226-585 11-390 (452)
45 2h6f_A Protein farnesyltransfe 99.5 1.5E-12 5.1E-17 135.2 21.0 243 315-564 97-364 (382)
46 2q7f_A YRRB protein; TPR, prot 99.5 5.1E-13 1.8E-17 130.1 16.1 172 388-562 60-236 (243)
47 4e6h_A MRNA 3'-END-processing 99.5 8E-11 2.7E-15 130.4 35.2 435 94-553 44-575 (679)
48 2ho1_A Type 4 fimbrial biogene 99.5 2.3E-12 7.8E-17 126.4 20.4 197 385-583 37-239 (252)
49 1ouv_A Conserved hypothetical 99.5 1.5E-11 5.1E-16 122.3 26.5 224 314-583 5-252 (273)
50 2q7f_A YRRB protein; TPR, prot 99.5 9.8E-13 3.3E-17 128.1 17.0 197 384-583 22-223 (243)
51 2pl2_A Hypothetical conserved 99.5 2.6E-12 8.8E-17 122.9 19.5 194 314-513 4-211 (217)
52 2vq2_A PILW, putative fimbrial 99.5 3.7E-12 1.3E-16 122.2 20.5 195 385-581 8-210 (225)
53 2vq2_A PILW, putative fimbrial 99.5 6E-12 2.1E-16 120.7 21.8 203 354-559 12-222 (225)
54 1ouv_A Conserved hypothetical 99.5 1.2E-11 4.2E-16 122.9 24.2 229 283-552 5-255 (273)
55 3u4t_A TPR repeat-containing p 99.4 8.6E-12 2.9E-16 123.8 22.8 224 253-479 3-249 (272)
56 4a1s_A PINS, partner of inscut 99.4 5.4E-13 1.9E-17 141.4 14.3 263 318-582 51-372 (411)
57 3sf4_A G-protein-signaling mod 99.4 2.6E-12 9E-17 135.6 18.3 263 317-581 11-335 (406)
58 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.3E-11 7.8E-16 120.8 23.9 242 196-474 18-269 (275)
59 3sf4_A G-protein-signaling mod 99.4 8.8E-12 3E-16 131.6 21.9 300 218-570 9-364 (406)
60 3vtx_A MAMA; tetratricopeptide 99.4 7.2E-12 2.5E-16 116.3 18.7 164 415-582 4-170 (184)
61 4abn_A Tetratricopeptide repea 99.4 8.8E-13 3E-17 142.2 14.2 193 383-579 100-318 (474)
62 2h6f_A Protein farnesyltransfe 99.4 3.3E-12 1.1E-16 132.6 17.6 225 351-581 98-347 (382)
63 3ro2_A PINS homolog, G-protein 99.4 4.1E-12 1.4E-16 130.0 17.7 262 319-582 9-332 (338)
64 2ond_A Cleavage stimulation fa 99.4 1.2E-10 4.2E-15 117.9 25.6 218 332-553 33-275 (308)
65 3vtx_A MAMA; tetratricopeptide 99.4 1.6E-11 5.6E-16 113.8 16.4 167 383-553 3-175 (184)
66 4a1s_A PINS, partner of inscut 99.4 6.1E-12 2.1E-16 133.3 15.2 267 254-551 49-375 (411)
67 4gyw_A UDP-N-acetylglucosamine 99.3 1.5E-11 5.1E-16 137.9 17.5 162 416-581 9-173 (723)
68 3ro2_A PINS homolog, G-protein 99.3 1.1E-10 3.9E-15 119.1 22.7 274 225-551 12-335 (338)
69 4e6h_A MRNA 3'-END-processing 99.3 3.3E-09 1.1E-13 117.5 33.8 433 135-584 50-572 (679)
70 3ulq_A Response regulator aspa 99.3 3.7E-11 1.3E-15 126.0 17.5 221 360-581 113-367 (383)
71 2ond_A Cleavage stimulation fa 99.3 2E-10 6.7E-15 116.4 21.3 212 367-583 33-271 (308)
72 3ulq_A Response regulator aspa 99.3 2.9E-10 9.8E-15 119.2 22.1 230 321-550 109-370 (383)
73 3nf1_A KLC 1, kinesin light ch 99.3 6.2E-12 2.1E-16 127.3 8.0 165 315-479 27-223 (311)
74 3as5_A MAMA; tetratricopeptide 99.2 1.5E-10 5.3E-15 106.8 16.6 159 387-582 10-173 (186)
75 3nf1_A KLC 1, kinesin light ch 99.2 1.2E-11 4.2E-16 125.2 9.7 246 284-551 27-310 (311)
76 1hz4_A MALT regulatory protein 99.2 3.8E-09 1.3E-13 110.0 28.5 262 321-582 20-322 (373)
77 4i17_A Hypothetical protein; T 99.2 4.5E-10 1.5E-14 108.1 19.6 205 348-564 5-225 (228)
78 3q15_A PSP28, response regulat 99.2 2.1E-09 7.3E-14 112.3 25.1 227 321-547 107-364 (378)
79 3as5_A MAMA; tetratricopeptide 99.2 7.1E-10 2.4E-14 102.3 18.7 168 351-554 9-179 (186)
80 4i17_A Hypothetical protein; T 99.2 4.6E-10 1.6E-14 108.0 17.5 187 385-582 7-209 (228)
81 4abn_A Tetratricopeptide repea 99.2 6E-10 2E-14 120.0 17.8 208 331-544 84-317 (474)
82 1hz4_A MALT regulatory protein 99.1 4.3E-08 1.5E-12 102.0 30.3 266 190-479 21-321 (373)
83 3q15_A PSP28, response regulat 99.1 1.5E-09 5.1E-14 113.4 17.8 308 249-581 6-364 (378)
84 1qqe_A Vesicular transport pro 99.1 9.4E-10 3.2E-14 110.3 14.0 186 394-579 46-266 (292)
85 4gyw_A UDP-N-acetylglucosamine 99.1 6.1E-10 2.1E-14 124.9 13.0 164 384-551 8-177 (723)
86 1qqe_A Vesicular transport pro 99.0 2.8E-09 9.5E-14 106.9 15.8 167 387-555 79-276 (292)
87 3edt_B KLC 2, kinesin light ch 99.0 2.2E-09 7.6E-14 106.5 13.8 221 361-581 12-280 (283)
88 3qky_A Outer membrane assembly 99.0 7.8E-09 2.7E-13 101.7 16.5 183 385-571 15-250 (261)
89 3qky_A Outer membrane assembly 99.0 2.5E-08 8.6E-13 98.0 19.7 191 413-628 12-247 (261)
90 3edt_B KLC 2, kinesin light ch 99.0 1.4E-08 4.8E-13 100.6 17.5 199 351-549 44-282 (283)
91 4ga2_A E3 SUMO-protein ligase 98.9 7.8E-10 2.7E-14 98.5 6.0 139 426-568 7-149 (150)
92 2fo7_A Synthetic consensus TPR 98.9 1.6E-08 5.6E-13 87.3 13.7 129 418-581 3-131 (136)
93 2pzi_A Probable serine/threoni 98.9 4.5E-09 1.5E-13 118.4 12.7 168 396-568 402-583 (681)
94 2fo7_A Synthetic consensus TPR 98.9 3.3E-08 1.1E-12 85.3 15.5 92 387-479 3-97 (136)
95 2yhc_A BAMD, UPF0169 lipoprote 98.9 3.9E-08 1.3E-12 94.2 17.4 182 385-585 4-216 (225)
96 2uy1_A Cleavage stimulation fa 98.9 1.1E-06 3.7E-11 94.5 30.0 370 130-546 7-411 (493)
97 3mv2_B Coatomer subunit epsilo 98.9 1.3E-07 4.3E-12 93.1 20.6 174 404-582 85-282 (310)
98 3mv2_B Coatomer subunit epsilo 98.9 1.5E-07 5.2E-12 92.5 20.0 237 296-554 25-288 (310)
99 3qou_A Protein YBBN; thioredox 98.8 5.6E-08 1.9E-12 97.0 16.1 173 403-580 104-282 (287)
100 4ga2_A E3 SUMO-protein ligase 98.8 4.8E-09 1.7E-13 93.3 6.2 122 458-581 4-128 (150)
101 2pzi_A Probable serine/threoni 98.8 1.2E-07 4E-12 106.9 18.9 190 361-556 402-610 (681)
102 3rjv_A Putative SEL1 repeat pr 98.8 2.3E-07 7.9E-12 87.8 17.9 172 404-584 5-199 (212)
103 3urz_A Uncharacterized protein 98.8 9.1E-08 3.1E-12 90.3 14.9 127 421-552 59-190 (208)
104 2ifu_A Gamma-SNAP; membrane fu 98.8 6.8E-08 2.3E-12 97.5 14.3 219 328-574 4-253 (307)
105 2vsy_A XCC0866; transferase, g 98.8 6.1E-08 2.1E-12 107.2 14.9 159 398-560 2-169 (568)
106 2yhc_A BAMD, UPF0169 lipoprote 98.7 2E-07 6.7E-12 89.2 16.2 184 350-554 4-219 (225)
107 4gco_A Protein STI-1; structur 98.7 5.2E-08 1.8E-12 83.5 10.8 114 447-562 8-124 (126)
108 2r5s_A Uncharacterized protein 98.7 6.7E-08 2.3E-12 88.5 12.0 157 388-581 9-172 (176)
109 2vsy_A XCC0866; transferase, g 98.7 1.3E-07 4.6E-12 104.4 16.6 146 363-513 2-154 (568)
110 3gyz_A Chaperone protein IPGC; 98.7 2.5E-08 8.6E-13 88.3 8.1 97 487-583 36-134 (151)
111 2r5s_A Uncharacterized protein 98.7 1.2E-07 4E-12 86.9 12.7 158 352-512 8-169 (176)
112 2vgx_A Chaperone SYCD; alterna 98.7 4.8E-08 1.7E-12 86.5 8.7 97 486-582 20-118 (148)
113 3dra_A Protein farnesyltransfe 98.7 1.4E-06 4.7E-11 86.7 20.1 225 327-557 44-297 (306)
114 2ifu_A Gamma-SNAP; membrane fu 98.7 5.9E-08 2E-12 97.9 10.3 196 363-580 4-222 (307)
115 2uy1_A Cleavage stimulation fa 98.7 2.3E-05 8E-10 84.1 30.7 200 236-444 197-412 (493)
116 2qfc_A PLCR protein; TPR, HTH, 98.6 8.4E-07 2.9E-11 88.7 17.6 164 418-581 77-265 (293)
117 3u3w_A Transcriptional activat 98.6 2.2E-06 7.5E-11 85.6 20.5 160 422-581 81-265 (293)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.3E-06 4.5E-11 82.4 17.5 146 388-553 9-155 (213)
119 3dra_A Protein farnesyltransfe 98.6 1.1E-05 3.6E-10 80.2 24.3 212 365-581 48-286 (306)
120 3qou_A Protein YBBN; thioredox 98.6 2.8E-07 9.7E-12 91.8 12.9 159 384-546 116-282 (287)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.6 9.7E-07 3.3E-11 83.3 15.9 124 456-584 11-152 (213)
122 4gco_A Protein STI-1; structur 98.6 1.8E-07 6.3E-12 80.1 9.7 96 487-582 13-110 (126)
123 2c2l_A CHIP, carboxy terminus 98.6 1.2E-07 4.2E-12 94.1 9.6 191 385-582 4-199 (281)
124 1a17_A Serine/threonine protei 98.6 6.1E-07 2.1E-11 80.7 13.0 126 454-581 16-145 (166)
125 1na0_A Designed protein CTPR3; 98.6 6.7E-07 2.3E-11 75.7 12.4 114 452-567 10-125 (125)
126 3urz_A Uncharacterized protein 98.6 1.2E-06 4.2E-11 82.5 15.1 182 320-527 9-198 (208)
127 2vyi_A SGTA protein; chaperone 98.5 6.4E-07 2.2E-11 76.6 12.0 116 453-570 14-131 (131)
128 2xcb_A PCRH, regulatory protei 98.5 3.1E-07 1E-11 80.6 9.9 96 487-582 18-115 (142)
129 2lni_A Stress-induced-phosphop 98.5 6.4E-07 2.2E-11 77.0 11.6 115 452-568 17-133 (133)
130 3rjv_A Putative SEL1 repeat pr 98.5 4.5E-06 1.6E-10 78.8 17.6 171 201-380 4-198 (212)
131 3u3w_A Transcriptional activat 98.5 1.8E-05 6.1E-10 78.9 22.3 158 391-548 81-266 (293)
132 1p5q_A FKBP52, FK506-binding p 98.5 7.5E-07 2.6E-11 90.9 11.9 143 416-580 147-292 (336)
133 2vgx_A Chaperone SYCD; alterna 98.4 2.7E-07 9.4E-12 81.6 7.2 103 453-557 23-127 (148)
134 2kck_A TPR repeat; tetratricop 98.4 1.6E-06 5.4E-11 71.8 11.4 98 486-583 5-107 (112)
135 1wao_1 Serine/threonine protei 98.4 7.5E-07 2.6E-11 95.5 11.7 117 460-578 15-135 (477)
136 3upv_A Heat shock protein STI1 98.4 9.7E-07 3.3E-11 75.4 9.2 95 488-582 5-101 (126)
137 2e2e_A Formate-dependent nitri 98.4 4.9E-07 1.7E-11 82.7 7.7 117 464-582 23-144 (177)
138 3gyz_A Chaperone protein IPGC; 98.4 1.1E-06 3.7E-11 77.7 9.4 99 453-553 38-138 (151)
139 4f3v_A ESX-1 secretion system 98.4 2.4E-06 8.2E-11 82.9 12.4 134 422-560 108-248 (282)
140 1hxi_A PEX5, peroxisome target 98.4 1E-06 3.6E-11 74.7 8.5 95 488-582 18-114 (121)
141 1elw_A TPR1-domain of HOP; HOP 98.4 4.4E-06 1.5E-10 69.7 12.5 108 453-562 6-115 (118)
142 4f3v_A ESX-1 secretion system 98.4 3E-06 1E-10 82.2 12.4 182 397-583 18-238 (282)
143 2fbn_A 70 kDa peptidylprolyl i 98.4 2.8E-06 9.5E-11 79.2 12.0 169 394-583 13-187 (198)
144 2e2e_A Formate-dependent nitri 98.3 2.4E-06 8.1E-11 78.0 11.1 127 427-557 21-153 (177)
145 3q49_B STIP1 homology and U bo 98.3 3.1E-06 1.1E-10 73.3 10.6 97 486-582 8-106 (137)
146 4gcn_A Protein STI-1; structur 98.3 1.2E-06 4.1E-11 75.0 7.8 92 490-581 11-111 (127)
147 2xcb_A PCRH, regulatory protei 98.3 1.7E-06 5.9E-11 75.7 8.9 106 453-560 20-127 (142)
148 3gw4_A Uncharacterized protein 98.3 4.5E-06 1.5E-10 77.8 12.4 151 397-547 4-175 (203)
149 2qfc_A PLCR protein; TPR, HTH, 98.3 6.9E-06 2.4E-10 81.9 14.4 161 388-548 78-266 (293)
150 3sz7_A HSC70 cochaperone (SGT) 98.3 2.2E-06 7.6E-11 77.1 9.1 102 453-556 13-116 (164)
151 3upv_A Heat shock protein STI1 98.3 5E-06 1.7E-10 70.8 10.8 109 453-563 6-122 (126)
152 3q7a_A Farnesyltransferase alp 98.3 0.00032 1.1E-08 70.4 25.2 178 319-502 58-257 (349)
153 1a17_A Serine/threonine protei 98.3 1.1E-05 3.9E-10 72.1 13.6 127 417-547 14-145 (166)
154 3dss_A Geranylgeranyl transfer 98.3 9.8E-05 3.3E-09 73.7 21.3 229 326-561 40-317 (331)
155 3sz7_A HSC70 cochaperone (SGT) 98.3 6.9E-06 2.4E-10 73.8 12.0 93 417-513 12-105 (164)
156 2c2l_A CHIP, carboxy terminus 98.3 1.1E-05 3.7E-10 79.9 14.2 190 350-549 4-200 (281)
157 3q7a_A Farnesyltransferase alp 98.2 4.1E-05 1.4E-09 76.8 17.9 214 363-581 67-330 (349)
158 2dba_A Smooth muscle cell asso 98.2 6.3E-06 2.2E-10 72.2 10.9 92 490-581 31-127 (148)
159 1elw_A TPR1-domain of HOP; HOP 98.2 5.5E-06 1.9E-10 69.1 9.8 97 487-583 4-102 (118)
160 3gw4_A Uncharacterized protein 98.2 6.5E-06 2.2E-10 76.7 11.2 81 297-377 5-93 (203)
161 1na0_A Designed protein CTPR3; 98.2 7.4E-06 2.5E-10 69.1 10.6 97 487-583 9-107 (125)
162 2lni_A Stress-induced-phosphop 98.2 4.5E-06 1.6E-10 71.5 9.2 98 485-582 14-113 (133)
163 2dba_A Smooth muscle cell asso 98.2 1.5E-05 5.1E-10 69.7 12.7 109 454-565 31-145 (148)
164 1wao_1 Serine/threonine protei 98.2 1.5E-05 5.1E-10 85.4 14.8 83 395-479 16-102 (477)
165 2hr2_A Hypothetical protein; a 98.2 4.3E-06 1.5E-10 73.1 8.1 63 520-582 58-131 (159)
166 1p5q_A FKBP52, FK506-binding p 98.2 1.1E-05 3.9E-10 82.1 12.2 113 364-479 127-258 (336)
167 3q49_B STIP1 homology and U bo 98.2 9.6E-06 3.3E-10 70.1 10.1 100 450-551 8-109 (137)
168 1hxi_A PEX5, peroxisome target 98.1 8.6E-06 2.9E-10 68.9 8.7 98 454-553 20-119 (121)
169 1elr_A TPR2A-domain of HOP; HO 98.1 7.2E-06 2.5E-10 69.9 8.3 105 457-564 10-123 (131)
170 2xev_A YBGF; tetratricopeptide 98.1 7.4E-06 2.5E-10 70.0 8.4 91 492-582 7-105 (129)
171 2vyi_A SGTA protein; chaperone 98.1 3.6E-05 1.2E-09 65.4 12.4 115 417-534 13-129 (131)
172 2kck_A TPR repeat; tetratricop 98.1 1.2E-05 4E-10 66.4 8.9 99 453-553 8-111 (112)
173 3dss_A Geranylgeranyl transfer 98.1 0.00034 1.2E-08 69.8 20.7 218 361-582 40-304 (331)
174 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.7E-05 6E-10 84.5 12.1 144 416-581 268-414 (457)
175 2xev_A YBGF; tetratricopeptide 98.1 3.3E-05 1.1E-09 65.8 11.7 101 458-560 9-117 (129)
176 3rkv_A Putative peptidylprolyl 98.1 2.1E-05 7.2E-10 70.4 10.6 64 519-582 63-126 (162)
177 1dce_A Protein (RAB geranylger 98.0 0.00015 5.2E-09 79.0 19.2 168 400-571 44-244 (567)
178 3k9i_A BH0479 protein; putativ 98.0 2.8E-06 9.7E-11 71.4 4.2 83 500-582 3-90 (117)
179 2fbn_A 70 kDa peptidylprolyl i 98.0 6.5E-06 2.2E-10 76.7 7.0 145 358-507 12-176 (198)
180 4gcn_A Protein STI-1; structur 98.0 1.1E-05 3.6E-10 69.0 7.6 106 417-551 9-115 (127)
181 4b4t_Q 26S proteasome regulato 98.0 3.2E-05 1.1E-09 81.8 12.9 163 419-581 58-244 (434)
182 3rkv_A Putative peptidylprolyl 98.0 1.1E-05 3.8E-10 72.2 7.4 76 487-562 63-141 (162)
183 1elr_A TPR2A-domain of HOP; HO 98.0 1.6E-05 5.5E-10 67.7 8.1 95 488-582 5-108 (131)
184 2if4_A ATFKBP42; FKBP-like, al 98.0 1.6E-05 5.5E-10 81.0 8.7 147 417-583 180-329 (338)
185 1ihg_A Cyclophilin 40; ppiase 97.9 2.4E-05 8.2E-10 80.7 10.0 139 416-575 223-363 (370)
186 3ro3_A PINS homolog, G-protein 97.9 3.2E-05 1.1E-09 68.5 9.6 136 417-581 10-157 (164)
187 2hr2_A Hypothetical protein; a 97.9 1.7E-05 5.7E-10 69.4 7.2 71 489-559 59-142 (159)
188 3n71_A Histone lysine methyltr 97.9 6.5E-05 2.2E-09 79.9 12.9 123 461-583 319-465 (490)
189 3ro3_A PINS homolog, G-protein 97.9 5.7E-05 2E-09 66.9 10.0 136 385-549 9-159 (164)
190 4b4t_Q 26S proteasome regulato 97.9 0.00025 8.6E-09 74.8 16.6 161 353-513 58-242 (434)
191 3k9i_A BH0479 protein; putativ 97.8 1.1E-05 3.7E-10 67.8 4.3 93 464-557 3-99 (117)
192 2l6j_A TPR repeat-containing p 97.8 3.3E-05 1.1E-09 63.7 6.8 91 487-577 4-102 (111)
193 2if4_A ATFKBP42; FKBP-like, al 97.8 2.6E-05 8.9E-10 79.5 6.9 114 453-583 181-294 (338)
194 3ma5_A Tetratricopeptide repea 97.8 8.8E-05 3E-09 60.1 8.4 65 518-582 6-70 (100)
195 1na3_A Designed protein CTPR2; 97.7 0.00014 4.7E-09 57.2 8.5 80 488-567 10-91 (91)
196 2kat_A Uncharacterized protein 97.7 8.2E-05 2.8E-09 62.0 7.2 78 505-582 3-82 (115)
197 1ihg_A Cyclophilin 40; ppiase 97.7 0.00016 5.3E-09 74.5 10.8 112 452-582 224-336 (370)
198 1zu2_A Mitochondrial import re 97.7 2E-05 6.7E-10 68.8 3.2 86 498-583 13-121 (158)
199 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00032 1.1E-08 74.6 12.3 120 384-507 267-405 (457)
200 1dce_A Protein (RAB geranylger 97.6 0.00047 1.6E-08 75.1 13.5 150 430-583 43-222 (567)
201 3n71_A Histone lysine methyltr 97.6 0.00011 3.9E-09 78.1 7.9 115 496-628 318-450 (490)
202 1zu2_A Mitochondrial import re 97.5 6.7E-05 2.3E-09 65.4 4.9 74 503-583 62-148 (158)
203 3qwp_A SET and MYND domain-con 97.4 0.0003 1E-08 73.6 9.2 113 497-627 297-427 (429)
204 2l6j_A TPR repeat-containing p 97.3 0.00039 1.3E-08 57.0 7.1 67 517-583 2-68 (111)
205 3bee_A Putative YFRE protein; 97.3 0.00065 2.2E-08 53.8 7.9 69 516-584 3-74 (93)
206 1klx_A Cysteine rich protein B 97.3 0.0014 4.7E-08 56.6 10.4 89 493-583 31-127 (138)
207 3qww_A SET and MYND domain-con 97.3 0.00017 5.8E-09 75.4 5.2 81 501-581 312-410 (433)
208 2kat_A Uncharacterized protein 97.2 0.00078 2.7E-08 55.8 7.6 81 470-552 4-86 (115)
209 1na3_A Designed protein CTPR2; 97.1 0.00098 3.3E-08 52.2 7.1 64 519-582 9-72 (91)
210 3ly7_A Transcriptional activat 97.1 0.0093 3.2E-07 59.7 14.8 138 414-553 192-344 (372)
211 1klx_A Cysteine rich protein B 97.1 0.0022 7.5E-08 55.3 9.0 113 429-550 8-128 (138)
212 3qww_A SET and MYND domain-con 96.9 0.0033 1.1E-07 65.6 10.6 69 488-556 341-424 (433)
213 3qwp_A SET and MYND domain-con 96.9 0.0061 2.1E-07 63.7 12.3 69 489-557 331-414 (429)
214 2kc7_A BFR218_protein; tetratr 96.8 0.0046 1.6E-07 49.2 8.3 64 493-556 6-72 (99)
215 3lvg_A Clathrin heavy chain 1; 96.7 0.00022 7.5E-09 72.5 -0.9 252 67-336 41-325 (624)
216 2kc7_A BFR218_protein; tetratr 96.6 0.0033 1.1E-07 50.2 6.2 59 525-583 6-65 (99)
217 3mkq_A Coatomer beta'-subunit; 96.6 0.21 7.1E-06 57.1 23.8 129 257-410 633-761 (814)
218 1wy6_A Hypothetical protein ST 96.6 0.13 4.3E-06 42.5 14.9 140 427-585 18-157 (172)
219 3ma5_A Tetratricopeptide repea 96.5 0.01 3.5E-07 47.5 8.2 61 416-478 7-68 (100)
220 1pc2_A Mitochondria fission pr 96.4 0.015 5E-07 50.0 8.8 65 517-581 30-99 (152)
221 3u64_A Protein TP_0956; tetrat 96.4 0.012 4.1E-07 56.4 9.1 87 503-589 179-276 (301)
222 3ly7_A Transcriptional activat 96.3 0.033 1.1E-06 55.7 12.0 132 448-583 191-340 (372)
223 3lvg_A Clathrin heavy chain 1; 96.2 0.0039 1.3E-07 63.6 5.2 421 44-509 51-534 (624)
224 3mkq_B Coatomer subunit alpha; 96.1 0.2 6.7E-06 44.2 14.8 129 393-545 13-141 (177)
225 3bee_A Putative YFRE protein; 96.1 0.022 7.5E-07 44.8 8.0 75 484-559 3-82 (93)
226 3mkq_A Coatomer beta'-subunit; 96.1 0.29 9.8E-06 55.9 20.7 153 325-513 609-762 (814)
227 2v5f_A Prolyl 4-hydroxylase su 95.7 0.047 1.6E-06 44.0 8.5 43 518-560 45-87 (104)
228 1pc2_A Mitochondria fission pr 95.6 0.037 1.3E-06 47.5 7.9 73 485-557 30-109 (152)
229 3mkq_B Coatomer subunit alpha; 94.4 1.7 5.9E-05 38.2 15.2 98 298-412 19-116 (177)
230 2v5f_A Prolyl 4-hydroxylase su 93.4 0.24 8.1E-06 39.7 7.4 65 518-582 4-75 (104)
231 1nzn_A CGI-135 protein, fissio 92.9 0.42 1.4E-05 39.4 8.0 97 458-556 8-111 (126)
232 1nzn_A CGI-135 protein, fissio 92.7 0.73 2.5E-05 37.9 9.3 88 428-518 13-106 (126)
233 2wpv_A GET4, UPF0363 protein Y 92.6 8 0.00027 37.6 22.0 168 287-480 36-217 (312)
234 4gns_B Protein CSD3, chitin bi 92.3 0.58 2E-05 51.8 10.7 53 527-579 345-397 (754)
235 4h7y_A Dual specificity protei 92.0 0.6 2E-05 39.5 7.9 54 501-554 74-129 (161)
236 3u64_A Protein TP_0956; tetrat 91.9 2.3 7.9E-05 40.7 12.9 115 165-281 134-268 (301)
237 1wy6_A Hypothetical protein ST 91.6 5.1 0.00017 33.2 13.3 84 397-483 73-156 (172)
238 4h7y_A Dual specificity protei 91.5 0.43 1.5E-05 40.4 6.5 54 532-585 73-126 (161)
239 1y8m_A FIS1; mitochondria, unk 91.4 4.3 0.00015 34.0 12.5 47 535-581 58-105 (144)
240 4ady_A RPN2, 26S proteasome re 89.5 32 0.0011 38.9 29.3 251 263-522 384-664 (963)
241 1qsa_A Protein (soluble lytic 89.0 28 0.00097 37.6 27.8 123 430-560 228-356 (618)
242 3lpz_A GET4 (YOR164C homolog); 89.0 18 0.00063 35.4 23.3 167 287-479 38-215 (336)
243 4ady_A RPN2, 26S proteasome re 88.2 39 0.0013 38.3 30.4 286 255-546 341-656 (963)
244 2wpv_A GET4, UPF0363 protein Y 86.6 24 0.00083 34.2 21.6 130 155-295 36-176 (312)
245 3lpz_A GET4 (YOR164C homolog); 86.5 26 0.00088 34.3 22.6 110 156-276 39-159 (336)
246 2p58_C Putative type III secre 84.9 7.6 0.00026 30.0 8.8 86 365-455 22-107 (116)
247 3txn_A 26S proteasome regulato 84.9 23 0.00077 35.8 15.5 56 457-512 105-164 (394)
248 4b4t_P 26S proteasome regulato 84.5 40 0.0014 34.8 22.3 31 383-413 291-323 (445)
249 2uwj_G Type III export protein 84.0 7.1 0.00024 30.1 8.3 86 365-455 21-106 (115)
250 2p58_C Putative type III secre 84.0 10 0.00035 29.3 9.2 57 294-353 50-106 (116)
251 3ffl_A Anaphase-promoting comp 83.3 5 0.00017 34.7 8.3 26 489-514 124-149 (167)
252 1v54_E Cytochrome C oxidase po 82.2 6.5 0.00022 30.6 7.6 63 431-495 25-87 (109)
253 3o48_A Mitochondria fission 1 82.0 4 0.00014 33.7 6.9 69 485-553 38-112 (134)
254 3ffl_A Anaphase-promoting comp 81.0 5.4 0.00019 34.4 7.7 120 446-579 13-148 (167)
255 1v54_E Cytochrome C oxidase po 80.1 6.9 0.00023 30.5 7.1 61 99-160 27-87 (109)
256 2uwj_G Type III export protein 79.6 15 0.0005 28.4 8.6 86 131-221 20-105 (115)
257 2ff4_A Probable regulatory pro 79.0 4.1 0.00014 41.5 7.7 67 522-588 174-245 (388)
258 1y8m_A FIS1; mitochondria, unk 78.6 26 0.00087 29.4 10.8 35 521-555 79-113 (144)
259 3o48_A Mitochondria fission 1 77.7 15 0.00053 30.3 9.1 73 446-519 35-111 (134)
260 1zbp_A Hypothetical protein VP 76.9 9.5 0.00033 35.9 8.6 53 425-479 6-59 (273)
261 2ff4_A Probable regulatory pro 76.9 13 0.00046 37.6 10.8 68 420-488 175-246 (388)
262 4gns_B Protein CSD3, chitin bi 76.9 67 0.0023 35.5 16.8 55 225-280 344-398 (754)
263 4fhn_B Nucleoporin NUP120; pro 74.9 1.3E+02 0.0046 35.3 20.1 84 219-302 900-989 (1139)
264 2y69_E Cytochrome C oxidase su 74.0 13 0.00046 30.6 7.6 62 432-495 69-130 (152)
265 3esl_A Checkpoint serine/threo 74.0 49 0.0017 29.6 12.6 96 515-636 73-173 (202)
266 4fhn_B Nucleoporin NUP120; pro 72.3 39 0.0013 39.9 14.6 59 522-580 902-965 (1139)
267 3ltm_A Alpha-REP4; protein eng 71.5 56 0.0019 29.2 18.0 17 252-268 94-110 (211)
268 1qsa_A Protein (soluble lytic 70.7 1.2E+02 0.0041 32.7 36.7 391 155-587 75-484 (618)
269 2qx5_A Nucleoporin NIC96; mRNA 70.6 90 0.0031 33.9 15.7 21 498-518 549-569 (661)
270 2y69_E Cytochrome C oxidase su 69.8 16 0.00054 30.2 7.1 60 100-160 71-130 (152)
271 4b4t_P 26S proteasome regulato 69.2 1.1E+02 0.0037 31.5 22.1 95 419-513 140-244 (445)
272 3ltm_A Alpha-REP4; protein eng 68.3 66 0.0022 28.7 19.6 61 383-444 124-184 (211)
273 3ltj_A Alpharep-4; protein eng 66.6 69 0.0023 28.3 19.3 59 384-443 120-178 (201)
274 1wdy_A 2-5A-dependent ribonucl 65.9 67 0.0023 30.0 12.7 115 156-278 6-127 (285)
275 1n11_A Ankyrin; clathrin, BAND 65.5 88 0.003 31.8 14.3 12 65-76 25-36 (437)
276 1zbp_A Hypothetical protein VP 64.3 9.1 0.00031 36.1 5.5 59 495-553 5-65 (273)
277 4b4t_R RPN7, 26S proteasome re 61.8 40 0.0014 34.6 10.6 92 488-579 132-234 (429)
278 3mv2_A Coatomer subunit alpha; 61.8 62 0.0021 31.3 10.8 57 512-582 198-256 (325)
279 1wdy_A 2-5A-dependent ribonucl 61.0 73 0.0025 29.7 11.9 118 122-252 7-132 (285)
280 1k1a_A B-cell lymphoma 3-encod 60.3 74 0.0025 28.8 11.5 87 89-179 13-103 (241)
281 2qx5_A Nucleoporin NIC96; mRNA 55.3 2.3E+02 0.0079 30.7 20.7 42 154-196 155-199 (661)
282 3ltj_A Alpharep-4; protein eng 54.8 1.1E+02 0.0038 26.8 19.0 85 308-400 83-167 (201)
283 4a1g_A Mitotic checkpoint seri 54.6 62 0.0021 27.5 8.5 77 504-586 52-134 (152)
284 3txn_A 26S proteasome regulato 54.4 1.8E+02 0.0062 29.2 20.2 289 256-585 22-346 (394)
285 4b4t_R RPN7, 26S proteasome re 52.1 98 0.0033 31.6 11.5 57 387-443 133-195 (429)
286 3jxi_A Vanilloid receptor-rela 51.9 29 0.00098 32.4 7.0 92 89-180 9-118 (260)
287 2wvi_A Mitotic checkpoint seri 51.8 75 0.0026 27.3 8.7 76 505-586 48-129 (164)
288 3kea_A K1L; tropism, ANK repea 51.5 95 0.0033 29.3 10.9 20 158-177 65-84 (285)
289 2zu6_B Programmed cell death p 48.8 95 0.0033 30.0 10.1 57 155-211 6-66 (307)
290 3bqo_A Telomeric repeat-bindin 47.9 94 0.0032 27.5 8.6 62 503-564 94-162 (211)
291 1k1a_A B-cell lymphoma 3-encod 47.8 84 0.0029 28.4 9.6 84 124-208 13-101 (241)
292 3hra_A Ankyrin repeat family p 47.0 1.3E+02 0.0043 26.2 10.4 47 65-116 16-66 (201)
293 3eu9_A Huntingtin-interacting 45.0 83 0.0029 28.3 9.1 105 65-178 20-132 (240)
294 3jxi_A Vanilloid receptor-rela 44.1 42 0.0014 31.2 6.8 53 192-244 11-72 (260)
295 2l0z_A Glycoprotein G2; zinc-b 42.2 8.4 0.00029 23.8 0.9 17 705-721 12-29 (42)
296 3hra_A Ankyrin repeat family p 40.7 1.4E+02 0.0047 26.0 9.6 176 91-275 11-197 (201)
297 2nsz_A Programmed cell death p 40.6 1.3E+02 0.0045 24.5 8.4 64 388-451 10-78 (129)
298 3eu9_A Huntingtin-interacting 38.6 1.9E+02 0.0065 25.8 10.5 20 392-411 214-233 (240)
299 3esl_A Checkpoint serine/threo 36.4 2.3E+02 0.0079 25.2 10.1 49 234-282 95-144 (202)
300 3aji_A 26S proteasome non-ATPa 36.2 1.2E+02 0.004 27.2 8.5 13 93-105 14-26 (231)
301 3ljn_A Hypothetical protein; a 36.1 1.1E+02 0.0039 29.9 9.0 14 164-177 62-75 (364)
302 2r9g_A AAA ATPase, central reg 36.0 1.5E+02 0.0051 26.3 8.2 49 316-365 12-63 (204)
303 3ygs_P Procaspase 9; apoptosis 35.9 52 0.0018 25.4 4.8 34 299-332 52-85 (97)
304 3kea_A K1L; tropism, ANK repea 35.5 1.7E+02 0.006 27.4 9.9 101 92-200 38-143 (285)
305 2nsz_A Programmed cell death p 35.3 90 0.0031 25.5 6.5 22 258-279 12-33 (129)
306 4a1g_A Mitotic checkpoint seri 34.7 2E+02 0.0069 24.3 8.6 46 171-216 84-134 (152)
307 2pnn_A Transient receptor pote 34.3 1.3E+02 0.0045 27.9 8.7 16 263-278 108-123 (273)
308 3d9h_A CDNA FLJ77766, highly s 33.6 2E+02 0.0069 26.9 10.0 88 81-178 56-148 (285)
309 3b7b_A Euchromatic histone-lys 32.8 1.7E+02 0.0056 26.3 9.0 14 163-176 85-98 (237)
310 2ion_A PDCD4, programmed cell 31.7 1.3E+02 0.0044 25.5 7.0 64 388-451 12-80 (152)
311 2d2s_A Exocyst complex compone 30.6 1.7E+02 0.0056 27.0 8.1 24 87-110 23-46 (235)
312 1ug3_A EIF4GI, eukaryotic prot 30.6 2.5E+02 0.0086 27.4 10.1 26 257-282 15-40 (339)
313 2d2s_A Exocyst complex compone 30.2 1.8E+02 0.0061 26.8 8.3 84 190-276 25-114 (235)
314 2pnn_A Transient receptor pote 29.7 1.1E+02 0.0039 28.3 7.4 96 83-180 12-126 (273)
315 2k0q_A Putative uncharacterize 29.5 15 0.00053 25.9 0.7 22 698-719 8-29 (74)
316 2ion_A PDCD4, programmed cell 28.5 84 0.0029 26.6 5.3 23 258-280 14-36 (152)
317 3mkr_B Coatomer subunit alpha; 28.5 1.1E+02 0.0038 29.5 6.7 59 511-583 188-248 (320)
318 4b4t_S RPN3, 26S proteasome re 28.5 1.2E+02 0.0042 31.6 7.4 57 453-513 233-296 (523)
319 2rfa_A Transient receptor pote 28.4 1.7E+02 0.0059 26.1 8.2 82 193-279 128-220 (232)
320 1oyz_A Hypothetical protein YI 28.3 3.6E+02 0.012 24.9 22.2 46 383-428 140-185 (280)
321 3ygs_P Procaspase 9; apoptosis 27.5 63 0.0021 24.9 4.0 38 166-203 51-88 (97)
322 2rfa_A Transient receptor pote 27.0 3.3E+02 0.011 24.1 10.1 173 65-245 14-221 (232)
323 4gq2_M Nucleoporin NUP120; bet 26.8 4.1E+02 0.014 30.4 12.3 33 521-553 899-932 (950)
324 1qc6_A EVH1 domain from ENA/VA 26.5 22 0.00075 29.4 1.2 40 670-717 44-87 (130)
325 2lo3_A SAGA-associated factor 26.1 20 0.00069 22.4 0.7 11 678-688 16-26 (44)
326 2pk8_A Uncharacterized protein 26.0 46 0.0016 25.1 2.7 27 612-638 15-41 (103)
327 1bd8_A P19INK4D CDK4/6 inhibit 25.0 1.4E+02 0.0047 24.6 6.4 14 163-176 43-56 (156)
328 2etb_A Transient receptor pote 24.6 1.9E+02 0.0065 26.4 7.8 92 88-180 5-115 (256)
329 1ya0_A SMG-7 transcript varian 24.1 1.4E+02 0.0048 31.1 7.2 41 529-569 162-202 (497)
330 3ctd_A Putative ATPase, AAA fa 24.0 2.2E+02 0.0074 25.5 7.1 51 314-364 31-84 (213)
331 2p1h_A APAF-1, apoptotic prote 23.6 1.2E+02 0.0041 23.0 5.0 30 300-329 52-81 (94)
332 1oyz_A Hypothetical protein YI 23.5 4.4E+02 0.015 24.3 23.6 19 250-268 139-157 (280)
333 3bge_A Predicted ATPase; struc 23.1 1.9E+02 0.0065 25.6 6.5 47 318-364 7-56 (201)
334 1n11_A Ankyrin; clathrin, BAND 22.8 5.7E+02 0.02 25.4 14.4 55 392-451 315-372 (437)
335 2etb_A Transient receptor pote 22.5 1.7E+02 0.0057 26.8 6.9 27 191-217 7-33 (256)
336 2fu4_A Ferric uptake regulatio 22.3 2.2E+02 0.0077 20.5 6.9 62 207-269 6-68 (83)
337 3re2_A Predicted protein; meni 21.8 2.3E+02 0.0079 27.7 7.3 78 485-571 294-393 (472)
338 2fe3_A Peroxide operon regulat 21.3 1.9E+02 0.0066 24.0 6.3 62 207-269 11-72 (145)
339 3eiq_C Programmed cell death p 20.9 6E+02 0.021 24.9 15.3 198 121-327 58-296 (358)
340 3ljn_A Hypothetical protein; a 20.5 5.4E+02 0.018 24.8 10.7 87 81-176 17-105 (364)
341 3b7b_A Euchromatic histone-lys 20.2 3.5E+02 0.012 24.0 8.7 12 65-76 55-66 (237)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-43 Score=398.62 Aligned_cols=491 Identities=9% Similarity=-0.018 Sum_probs=343.3
Q ss_pred CChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 004938 65 SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144 (722)
Q Consensus 65 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 144 (722)
|.+..++..|+.++.++...|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+++.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 144 (597)
T 2xpi_A 67 GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKED 144 (597)
T ss_dssp ---------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh
Confidence 8888899999999989999999999999999999999999999985 45788899999999999999999999999886
Q ss_pred HhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCC-------------------CcccHHHHHHHHHhCCChhHHHHH
Q 004938 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR-------------------DIVPWSVMIDGYFQNGLFDEVLNL 205 (722)
Q Consensus 145 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~ 205 (722)
.. +++..+++.++.+|.++|++++|+++|+++... ++.+|+.++.+|.+.|++++|+++
T Consensus 145 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 145 LY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp GG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 54 678999999999999999999999999965433 367899999999999999999999
Q ss_pred HHHHHHCCCCCC-HhHHHHHHHHHHccCChHHH--HHH-HHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 004938 206 FEEMKMSNVEPD-EMVLSKILSACSRAGNLSYG--EAV-HEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL 281 (722)
Q Consensus 206 ~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 281 (722)
|++|.+.+ |+ ...+..+...+...+..+.+ ..+ +..+...+..+...+++.++.+|.+.|++++|.++|+++..
T Consensus 223 ~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 223 YKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 99998753 43 34444444433322222111 111 34444444445556677777888888888888888877765
Q ss_pred --CCchHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHH
Q 004938 282 --KNLVVSTAMVSGYSRAGQVEDARLIFDQMVE---KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSV 356 (722)
Q Consensus 282 --~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 356 (722)
++..+|+.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+.+|+++.+.. +.+..++..+
T Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 379 (597)
T 2xpi_A 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAV 379 (597)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 5677777777777777777777777777632 256677777777777777777777777776542 3456666777
Q ss_pred HHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHH
Q 004938 357 ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDAR 433 (722)
Q Consensus 357 l~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 433 (722)
...|.+.|++++|.++++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|+++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHH
Confidence 777777777777777777776642 33456677777777777777777777776542 35667777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc---CCCCC--cchHHHHHHHHHhcCCHHHHHH
Q 004938 434 NALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEY---NIPPK--YEHYGCMVDLFGRANLLREALE 508 (722)
Q Consensus 434 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~li~~~~~~g~~~~A~~ 508 (722)
+|+++|+++.+.. +.+..+|..++..+.+.|++++|.++|+.+.+.. +..|+ ..+|..++.+|.+.|++++|.+
T Consensus 459 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 459 LANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7777777776642 2345667777777777777777777777766532 44555 4567777777777777777777
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 509 LVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 509 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..++++|.
T Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 77665 2233 56677777777777777777777777777777777777777766664
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-39 Score=364.32 Aligned_cols=479 Identities=10% Similarity=-0.032 Sum_probs=401.8
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHH
Q 004938 93 SWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDAR 172 (722)
Q Consensus 93 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 172 (722)
...|.+..+...+..+. .++...|+.++..+.+.|++++|..+++.+.+. .|+..++..++.+|.+.|++++|+
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 34555556666665543 357788999999999999999999999999864 567789999999999999999999
Q ss_pred HHHhcC--CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC---------------CCCCCHhHHHHHHHHHHccCChH
Q 004938 173 LMFDKM--SYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS---------------NVEPDEMVLSKILSACSRAGNLS 235 (722)
Q Consensus 173 ~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~g~~~ 235 (722)
.+|+++ ..+++.+|+.++.+|.+.|++++|+++|+++... |..++..+|+.++.+|.+.|+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 999998 4678889999999999999999999999954222 33456889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH--H-HHhcccC----CchHHHHHHHHHHhcCCHHHHHHHHh
Q 004938 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKG--L-FDKVLLK----NLVVSTAMVSGYSRAGQVEDARLIFD 308 (722)
Q Consensus 236 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~--~-~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~ 308 (722)
+|.++|+.+++.+. .+...+..+...+...+..+.+.. + +..+... ...+|+.++..|.+.|++++|.++|+
T Consensus 218 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 99999999998753 356666666665544433322221 1 3333332 23456677889999999999999999
Q ss_pred ccCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChh
Q 004938 309 QMVE--KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLR 386 (722)
Q Consensus 309 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~ 386 (722)
++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|..++..+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9987 689999999999999999999999999999865 4477889999999999999999999999998753 56788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004938 387 VNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463 (722)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 463 (722)
+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 999999999999999999999998763 568899999999999999999999999999853 4467899999999999
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCC
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-------PFAPN--VVIWGSLMAACRVHGE 534 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~ 534 (722)
.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999873 4557889999999999999999999999988 45787 7899999999999999
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 535 IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 535 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
+++|...++++++.+|+++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999998753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2e-25 Score=236.07 Aligned_cols=369 Identities=14% Similarity=0.115 Sum_probs=283.7
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 004938 191 DGYFQNGLFDEVLNLFEEMKMSNVEPD-EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269 (722)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 269 (722)
..+.+.|++++|++.+.++.+. .|+ ...+..+...+...|+++.|...+..+++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4455566677777766666543 233 3344444555566677777777766666653 34566677777777777777
Q ss_pred HHHHHHHHhccc--C-CchHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 004938 270 DMAKGLFDKVLL--K-NLVVSTAMVSGYSRAGQVEDARLIFDQMVE--K-DLICWSAMISGYAENNHPQEALKLFNEMQV 343 (722)
Q Consensus 270 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (722)
++|...|+++.. | +..+|..+...+.+.|++++|.+.|+++.+ | +...+..+...+...|++++|++.|+++.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777766642 2 334566677777777777777777776632 2 445677777888888888888888888877
Q ss_pred CCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHH
Q 004938 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWT 420 (722)
Q Consensus 344 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 420 (722)
.. +.+..++..+...+...|++++|...++.+++.+ +.+...+..+...+...|++++|...|++..+ .+..+|.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 53 2346678888888888888888888888888764 44567788888889999999999999887653 4578899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh
Q 004938 421 SMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499 (722)
Q Consensus 421 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 499 (722)
.+...|...|++++|+..|+++.+. .|+ ..++..+..++.+.|++++|.+.|+.+.+ ..+.+...+..++..+.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHH
Confidence 9999999999999999999999884 554 56788899999999999999999999987 356678889999999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCC
Q 004938 500 ANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568 (722)
Q Consensus 500 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 568 (722)
.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++|+++..+..++.++...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999987 5555 467899999999999999999999999999999999999999998877663
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.5e-24 Score=229.25 Aligned_cols=350 Identities=13% Similarity=0.106 Sum_probs=307.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHH
Q 004938 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVE 301 (722)
Q Consensus 225 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 301 (722)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++..... +..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 445677899999999999998874 446777888889999999999999999887543 5678999999999999999
Q ss_pred HHHHHHhccCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHccCCchHHHHHHHHHH
Q 004938 302 DARLIFDQMVE--K-DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK-VTMLSVISACAHLGVLDQAQRIHLYID 377 (722)
Q Consensus 302 ~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~i~~~~~ 377 (722)
+|...|+++.. | +..+|..+...+.+.|++++|++.|+++.+. .|+. ..+..+...+...|++++|.+.+..++
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999998843 3 4567999999999999999999999999885 4554 456667778888999999999999998
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 004938 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVT 453 (722)
Q Consensus 378 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 453 (722)
+.. +.+..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .|+ ..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHH
Confidence 864 45678899999999999999999999999864 45678999999999999999999999999884 565 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHH
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF-APNVVIWGSLMAACRV 531 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 531 (722)
+..+..++...|++++|.+.|+.+.+ ..+.+...|..++..|.+.|++++|.+.++++ .. +++..+|..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 88999999999999999999999987 34455788999999999999999999999998 33 3467899999999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.|++++|...++++++..|++...+..++.+|.+.|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999763
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.6e-27 Score=254.09 Aligned_cols=183 Identities=13% Similarity=0.144 Sum_probs=163.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC---------chHHHHHHHHHHHcCCCCChh
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV---------LDQAQRIHLYIDKNAFGGDLR 386 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~i~~~~~~~~~~~~~~ 386 (722)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 578889999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004938 387 VNNAIIDMYAKCGSLESAREVFERMRR----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS 462 (722)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 462 (722)
+||+||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999998863 7899999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh
Q 004938 463 HAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499 (722)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 499 (722)
+.|++++|.++|++|.+ .+..|+..+|+.+++.|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 99999999999999987 4899999999999888865
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.8e-27 Score=253.97 Aligned_cols=185 Identities=14% Similarity=0.093 Sum_probs=172.2
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC---------hHHHHHHHHHHHHhCCCCch
Q 004938 82 SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEG---------LLEGMQVHGLGTKLGFGSDP 152 (722)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~ 152 (722)
...++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|+.|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346889999999999999999999999999999999999999999987654 68899999999999999999
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHhcCC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 004938 153 FVQTGLVGMYGACGKILDARLMFDKMS----YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228 (722)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 228 (722)
.+||+||.+|++.|++++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999986 4788999999999999999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 004938 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC 266 (722)
Q Consensus 229 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 266 (722)
++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2e-22 Score=221.32 Aligned_cols=446 Identities=12% Similarity=0.018 Sum_probs=295.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 004938 83 RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMY 162 (722)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 162 (722)
..|......+.+.|++++|+..|+++.+.. |+..++..+..++.+.|++++|...++.+++.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 346667778888999999999999988764 678888888888888999999999998888875 45667788888888
Q ss_pred HhCCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHH
Q 004938 163 GACGKILDARLMFDKMSY---RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEA 239 (722)
Q Consensus 163 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 239 (722)
.+.|++++|+..|+++.. .+......++..+........+.+.+..+...+..|+...+..-...............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 888888888888887643 23333444454444443344444444333333222322222111110111111111111
Q ss_pred HHHHHHHcCC---------CCCHhHHHHHHHHHHh---cCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHH
Q 004938 240 VHEFIIDNNV---------ALDAHLQSTLITMYAN---CGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIF 307 (722)
Q Consensus 240 ~~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f 307 (722)
+...+..... +.+...+..+...+.. .|++++|...|+++.. .+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------------~~ 219 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR------------------------LF 219 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH------------------------HH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH------------------------Hh
Confidence 1111111000 1112233333333332 4555555555443321 01
Q ss_pred hccC----------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHH
Q 004938 308 DQMV----------EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377 (722)
Q Consensus 308 ~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 377 (722)
+... ..+..+|..+...+...|++++|+..|+++.+.. |+..++..+..++...|++++|...+..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp HHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred hhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 0001 1134567778888888888888888888887754 446677777888888888888888888887
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004938 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTF 454 (722)
Q Consensus 378 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 454 (722)
+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+..++
T Consensus 298 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 375 (514)
T 2gw1_A 298 KLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVP 375 (514)
T ss_dssp TTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHH
T ss_pred hcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHH
Confidence 753 44567788888888889999999888887653 456788888888999999999999999988742 2345678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 004938 455 IGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGR---ANLLREALELVETM-PFAP-NVVIWGSL 525 (722)
Q Consensus 455 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l 525 (722)
..+...+...|++++|...++.+.+...-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 455 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 88888899999999999999988764222222 3378889999999 99999999999887 3334 56788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 004938 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLL 559 (722)
Q Consensus 526 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 559 (722)
...+...|++++|...++++++++|+++..+..+
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999999999999887766655
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.3e-22 Score=220.81 Aligned_cols=262 Identities=11% Similarity=-0.027 Sum_probs=224.2
Q ss_pred chHHHHHHHHHh---cCCchHHHHHHHHHHh-----CCCCC--------ChhhHHHHHHHHHccCCchHHHHHHHHHHHc
Q 004938 316 ICWSAMISGYAE---NNHPQEALKLFNEMQV-----CGMKP--------DKVTMLSVISACAHLGVLDQAQRIHLYIDKN 379 (722)
Q Consensus 316 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~ 379 (722)
..+......+.. .|++++|+..|+++.+ ..-.| +..++..+...+...|++++|...+..+.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 344444554554 8999999999999987 31122 3456777888899999999999999999987
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHH
Q 004938 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFI 455 (722)
Q Consensus 380 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~ 455 (722)
... ...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++... .| +..++.
T Consensus 267 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 342 (514)
T 2gw1_A 267 FPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYI 342 (514)
T ss_dssp CCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHH
T ss_pred Ccc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHH
Confidence 533 88889999999999999999999998765 46788999999999999999999999999985 44 456888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHH
Q 004938 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM----PFAPN----VVIWGSLMA 527 (722)
Q Consensus 456 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~ 527 (722)
.+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ +..|+ ...|..+..
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 8999999999999999999999873 4556788999999999999999999999887 22233 448899999
Q ss_pred HHHH---cCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 528 ACRV---HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 528 ~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
.+.. .|++++|...++++++.+|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999 9999999999999999999999999999999999999999999999998754
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.1e-21 Score=209.46 Aligned_cols=319 Identities=12% Similarity=0.068 Sum_probs=238.7
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHhccc---CCchHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHH
Q 004938 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLL---KNLVVSTAMVSGYSRAGQVEDARLIFDQMVE---KDLICWSAMISGY 325 (722)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 325 (722)
+...+..+...|.+.|++++|..+|+++.. .+..+|..+...|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 444555555555555555555555555532 2344555555555555555555555655532 2455677777777
Q ss_pred HhcCCchHHHHHHHHHHhCCCCCCh----hhHHHH------------HHHHHccCCchHHHHHHHHHHHcCCCCChhHHH
Q 004938 326 AENNHPQEALKLFNEMQVCGMKPDK----VTMLSV------------ISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNN 389 (722)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~ 389 (722)
.+.|++++|+..|+++.+. .|+. ..+..+ ...+...|++++|...+..+.+.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 7777777777777777664 3433 333333 344778899999999999888764 45678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHH--------
Q 004938 390 AIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVT-FIGV-------- 457 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l-------- 457 (722)
.+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.. ..|+... +..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999998764 5788999999999999999999999999987 4566543 3333
Q ss_pred ----HHHHHhcCCHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 004938 458 ----LYACSHAGLVDEGREIFASMTNEYNIPPK-----YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLM 526 (722)
Q Consensus 458 ----l~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 526 (722)
...+.+.|++++|..+|+.+.+. .|+ ..+|..++.++.+.|++++|++.++++ ...| +..+|..+.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 78899999999999999999873 343 347899999999999999999999987 4445 678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH------------HHhhhCC-----CcchHHHHHHH
Q 004938 527 AACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS------------NIYAKDK-----RWQDVGELRKS 578 (722)
Q Consensus 527 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 578 (722)
.+|...|++++|...++++++++|+++..+..++ +.|...| +.+++.+.+++
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999998 5577777 34445555554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=9.5e-21 Score=204.24 Aligned_cols=360 Identities=12% Similarity=0.028 Sum_probs=197.8
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 004938 185 PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYA 264 (722)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 264 (722)
.|..+...|.+.|++++|+.+|+++.+. .+.+..++..+..++...|+++.|...++.+++.+ +.+..++..+..+|.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 3555555555555666666665555543 12345555555556666666666666666665553 234556666666666
Q ss_pred hcCChHHHHHHHHhcccCCc------hHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 004938 265 NCGCMDMAKGLFDKVLLKNL------VVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF 338 (722)
Q Consensus 265 ~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 338 (722)
+.|++++|...|+++...+. ..|..++..+... .+..+...+...|++++|+..|
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666644322 3333333321110 1112222344444444444444
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CC
Q 004938 339 NEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RN 415 (722)
Q Consensus 339 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~ 415 (722)
+++.+.. +.+..++..+..++...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+
T Consensus 167 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 244 (450)
T 2y4t_A 167 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 244 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh
Confidence 4444331 2233444444444444555555555544444432 23344455555555555555555555554432 12
Q ss_pred hHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004938 416 VISWTSM------------INAFAIHGDARNALIFFNKMKDESIDPN-----GVTFIGVLYACSHAGLVDEGREIFASMT 478 (722)
Q Consensus 416 ~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 478 (722)
...+..+ ...+...|++++|+..|+++.. +.|+ ...+..+..++.+.|++++|...++.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2233322 6667777777777777777776 3454 2356666777777777777777777776
Q ss_pred hhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHHcC-----CHHHHH
Q 004938 479 NEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAA------------CRVHG-----EIELAE 539 (722)
Q Consensus 479 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~------------~~~~g-----~~~~a~ 539 (722)
+. .+.+...|..+..+|...|++++|.+.++++ ...|+ ...|..+..+ |...| +.+++.
T Consensus 323 ~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 323 QM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred Hh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 52 3445677777777777777888777777776 55554 4455555432 22233 567778
Q ss_pred HHHHH-HHccCCCCCc----------hHHHHHHHhhhCCCcch
Q 004938 540 FAAKQ-LLQLDPDHDG----------ALVLLSNIYAKDKRWQD 571 (722)
Q Consensus 540 ~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 571 (722)
+.|++ +++..|++.. .+..+..+|...|+.+.
T Consensus 401 ~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 401 KAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 88886 7778887532 33455555555555544
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.2e-20 Score=208.55 Aligned_cols=418 Identities=11% Similarity=0.039 Sum_probs=323.2
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 004938 152 PFVQTGLVGMYGACGKILDARLMFDKMSY---RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSAC 228 (722)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 228 (722)
...+..+...|.+.|++++|++.|+++.. .+...|..+...|.+.|++++|++.|+++.+.. +.+..++..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 45677788889999999999999988753 366678889999999999999999999988753 33567888888888
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC------CchHHHHHHHHHHhcCCHHH
Q 004938 229 SRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK------NLVVSTAMVSGYSRAGQVED 302 (722)
Q Consensus 229 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 302 (722)
...|+++.|...++ .+.. .|+ .....+..+...+....|...++++... ........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999886 4332 222 2233355666667778888888888653 22334566667777888888
Q ss_pred HHHHHhccCCCCcc---hHHHHHHHHHh--------cCCchHHHHHHHHHHhCCCCCC--------hhhHHHHHHHHHcc
Q 004938 303 ARLIFDQMVEKDLI---CWSAMISGYAE--------NNHPQEALKLFNEMQVCGMKPD--------KVTMLSVISACAHL 363 (722)
Q Consensus 303 A~~~f~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~ 363 (722)
+...+......+.. .+..+...+.. .|++++|+.+|+++.+. .|+ ..++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhc
Confidence 88777777665543 33333333222 25789999999999875 344 22466666778889
Q ss_pred CCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHH
Q 004938 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFN 440 (722)
Q Consensus 364 g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 440 (722)
|++++|...+..+.+.. |+...+..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999864 5578888899999999999999999998763 567889999999999999999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CC
Q 004938 441 KMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM----PF 515 (722)
Q Consensus 441 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 515 (722)
++... .|+ ...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ +.
T Consensus 335 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99885 444 567888999999999999999999999873 4556778999999999999999999999886 11
Q ss_pred CC----CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 516 AP----NVVIWGSLMAACRVH----------GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 516 ~p----~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
.+ ....+..+...+... |++++|...++++++.+|+++..+..++.+|...|++++|.+.+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 223344555667777 9999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004938 582 RG 583 (722)
Q Consensus 582 ~g 583 (722)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 54
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.6e-20 Score=207.36 Aligned_cols=438 Identities=11% Similarity=0.024 Sum_probs=308.0
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 004938 82 SRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGM 161 (722)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 161 (722)
...|..+...+.+.|++++|++.|+++.+..+ .+..++..+..++.+.|++++|...++.+++.. +.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34677888899999999999999999988643 266778888888899999999999999998876 4567788888888
Q ss_pred HHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCCHhHHHHHHHHHHccCChH
Q 004938 162 YGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS------NVEPDEMVLSKILSACSRAGNLS 235 (722)
Q Consensus 162 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g~~~ 235 (722)
|...|++++|+..|+.+ ..+....+..+..+...+...+|+..++++... ...|+..... .+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA----SFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH----HHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH----HHHHhcChH
Confidence 99999999999988644 223333334455556666667888888887543 1223333222 222333333
Q ss_pred HHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcC-ChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 004938 236 YGEAVHEFIIDNNVALD-AHLQSTLITMYANCG-CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK 313 (722)
Q Consensus 236 ~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 313 (722)
.+...+..... ..+. ......+...+...+ ++. ...|++++|...|+++.+.
T Consensus 178 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~------------------------~a~~~~~~A~~~~~~~l~~ 231 (537)
T 3fp2_A 178 LEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYL------------------------VANDLLTKSTDMYHSLLSA 231 (537)
T ss_dssp HHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHH------------------------HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhH------------------------HHHHHHHHHHHHHHHHHHH
Confidence 32222111110 0111 112222222222111 000 1113455555556665443
Q ss_pred C----------cchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCC
Q 004938 314 D----------LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG 383 (722)
Q Consensus 314 ~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~ 383 (722)
+ ..+|..+...+...|++++|+..|+++.+. .|+..++..+...+...|++++|...+..+.+.. +.
T Consensus 232 ~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 308 (537)
T 3fp2_A 232 NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PE 308 (537)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TT
T ss_pred CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CC
Confidence 2 124666777888999999999999999885 5667788888888999999999999999998864 45
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLY 459 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 459 (722)
+..++..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|+..|+++.+. .|+ ...+..+..
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 386 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAE 386 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 678899999999999999999999998763 45778999999999999999999999999885 444 568888899
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHHHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRA----------NLLREALELVETM-PFAP-NVVIWG 523 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~ 523 (722)
.+...|++++|...|+.+.+.....++ ...+..+...|.+. |++++|...++++ ...| +..+|.
T Consensus 387 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 466 (537)
T 3fp2_A 387 ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKI 466 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999998764211111 11234456777777 9999999999988 3344 578899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 524 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
.+...+...|++++|...+++++++.|+++....
T Consensus 467 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 467 GLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999999999999999998875544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=7.5e-18 Score=175.13 Aligned_cols=303 Identities=12% Similarity=0.051 Sum_probs=185.7
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHH
Q 004938 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDARLIFDQMVE---KDLICWSAMISGY 325 (722)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 325 (722)
|+..+..+...+.+.|++++|...|+++... +..+|..+...+...|++++|...|+++.+ .+...|..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4556777788888888888888888777432 455666677777777777777777766532 2445666677777
Q ss_pred HhcCCchHHHHHHHHHHhCCCCC---C-hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 004938 326 AENNHPQEALKLFNEMQVCGMKP---D-KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSL 401 (722)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~g~~p---~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 401 (722)
...|++++|+..|+++.+. .| + ...+..+.... . ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCH
Confidence 7777777777777776654 33 2 22222221000 0 00111224555566666
Q ss_pred HHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004938 402 ESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMT 478 (722)
Q Consensus 402 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 478 (722)
++|.+.|+++.+ .+...|..+...+...|++++|+..++++.... +.+..++..+...+...|++++|...|+.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666665542 344556666666666666666666666666531 2234455566666666666666666666665
Q ss_pred hhcCCCCCcchHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCCHHHHHH
Q 004938 479 NEYNIPPKYEHYG------------CMVDLFGRANLLREALELVETM-PFAPN-V----VIWGSLMAACRVHGEIELAEF 540 (722)
Q Consensus 479 ~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~ 540 (722)
+. .+.+...+. .+...+.+.|++++|.+.++++ ...|+ . ..|..+...+...|++++|..
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 42 122222222 2255577777777777777766 22333 2 234456667777888888888
Q ss_pred HHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 541 AAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 541 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888888888877777778888888888888888888777663
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=8.2e-18 Score=174.83 Aligned_cols=320 Identities=13% Similarity=0.041 Sum_probs=238.0
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhccc--C-CchHHHHHHHH
Q 004938 217 DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL--K-NLVVSTAMVSG 293 (722)
Q Consensus 217 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 293 (722)
|...+..+...+...|+++.|...++.+++.. +.+..++..+...|...|++++|...|+++.. | +...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 35567788888999999999999999999875 44788999999999999999999999999854 2 56789999999
Q ss_pred HHhcCCHHHHHHHHhccCCCCc------chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCch
Q 004938 294 YSRAGQVEDARLIFDQMVEKDL------ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLD 367 (722)
Q Consensus 294 ~~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 367 (722)
|.+.|++++|...|++..+.++ ..+..+...+ . ...+......+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999999866544 2233331110 0 011222334455666666
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 368 QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 368 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
+|...+..+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666665543 34456666677777777777777777776653 4566777777777788888888888887776
Q ss_pred cCCCCCHH-HHH------------HHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc----chHHHHHHHHHhcCCHHHHH
Q 004938 445 ESIDPNGV-TFI------------GVLYACSHAGLVDEGREIFASMTNEYNIPPKY----EHYGCMVDLFGRANLLREAL 507 (722)
Q Consensus 445 ~g~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~ 507 (722)
. .|+.. .+. .+...+...|++++|...++.+.+.. +.+. ..+..+...|.+.|++++|.
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 3 34432 222 23556888899999999999888732 2222 23556788899999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 508 ELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 508 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
+.+++. ...| +..+|..+...+...|++++|...++++++++|++......+..++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 999887 3345 678999999999999999999999999999999998888887776543
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=4.4e-15 Score=169.01 Aligned_cols=485 Identities=10% Similarity=0.065 Sum_probs=337.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCCCCcchHH-HHHHHHHhCCCchHHHH
Q 004938 25 LTHMKQTHAQILKLSHSHHSQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSN-KFIRAISWSHRPKHALK 103 (722)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~a~~ 103 (722)
+.......+.-+..| ..++.++|+|...|.. . .++++. .+.+-+- |. ..+.-|+...++..|.-
T Consensus 855 Lkll~p~LE~~~~~g----~~~~~~hnalakiyid--~-n~npe~---fL~~n~~-----yd~~~vgkyce~rDp~la~i 919 (1630)
T 1xi4_A 855 LKLLLPWLEARIHEG----CEEPATHNALAKIYID--S-NNNPER---FLRENPY-----YDSRVVGKYCEKRDPHLACV 919 (1630)
T ss_pred HHHHHHHHHHHHhCC----CCCHHHHHHHHHHHhc--c-CCCHHH---HhhccCc-----ccHHHHHHHHHhcCcchHHH
Confidence 344444455555556 4789999999999987 2 144443 2222111 21 23334444444444444
Q ss_pred HHHHHHHC----CC----------------CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCchhhHHHHHHH
Q 004938 104 VFLKMLNE----GL----------------TIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGF--GSDPFVQTGLVGM 161 (722)
Q Consensus 104 ~~~~m~~~----g~----------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~ 161 (722)
.|++-.-. .+ +-|...|..++. .+-+-=+++.++.....+ ..++.-....+..
T Consensus 920 ay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~-----~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKa 994 (1630)
T 1xi4_A 920 AYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLL-----ESNPYRRPLIDQVVQTALSETQDPEEVSVTVKA 994 (1630)
T ss_pred HhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhc-----CCcHHHHHHHHHHHHhhcccccCHHHhHHHHHH
Confidence 44320000 00 013334444441 111112234444333332 2233444567788
Q ss_pred HHhCCCHHHHHHHHhcCC-CCC-----cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChH
Q 004938 162 YGACGKILDARLMFDKMS-YRD-----IVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLS 235 (722)
Q Consensus 162 ~~~~g~~~~A~~~f~~m~-~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 235 (722)
|...|.+.+|+++++++. +++ ...-|.++....+. +..+..+...+.... + ...+...+...|.++
T Consensus 995 f~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 995 FMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFE 1066 (1630)
T ss_pred HHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHH
Confidence 889999999999999876 222 23366677777776 556666666655421 1 333667788899999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCc
Q 004938 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDL 315 (722)
Q Consensus 236 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~ 315 (722)
+|.++++... ......+.+ +-..|++++|.++.++. .+..+|..+..++.+.|++++|.+.|.+. .|.
T Consensus 1067 EAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~ 1134 (1630)
T 1xi4_A 1067 EAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDP 1134 (1630)
T ss_pred HHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CCh
Confidence 9999998752 112222333 23788999999998877 44778999999999999999999999774 677
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 395 (722)
..|..++..+.+.|++++|++.|...++.. ++....+.++.+|++.+++++...+. + .++...+..+.+.|
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRC 1205 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHH
Confidence 888999999999999999999999877754 44433445888999998888644442 2 34556677899999
Q ss_pred HhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004938 396 AKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFA 475 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 475 (722)
...|++++|...|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|++..|.....
T Consensus 1206 e~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred HhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999999985 58999999999999999999999876 356889999999999999999988765
Q ss_pred HhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH--cCCHHHHHHHHHHHHccCC-
Q 004938 476 SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRV--HGEIELAEFAAKQLLQLDP- 550 (722)
Q Consensus 476 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~p- 550 (722)
.+ ..+.+.+..++..|.+.|.+++|+.+++.. +.+|. ...|.-|...+.+ -++..++.+.|..-..+.|
T Consensus 1275 ~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~ 1348 (1630)
T 1xi4_A 1275 HI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 1348 (1630)
T ss_pred hh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchH
Confidence 43 345667789999999999999999999876 66554 3567666666665 4566777777777766666
Q ss_pred ----CCCchHHHHHHHhhhCCCcchHHHH
Q 004938 551 ----DHDGALVLLSNIYAKDKRWQDVGEL 575 (722)
Q Consensus 551 ----~~~~~~~~l~~~~~~~g~~~~a~~~ 575 (722)
++...|..+..+|.+.|+|+.|...
T Consensus 1349 ~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1349 LRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 6677888999999999999999853
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=4.7e-17 Score=167.04 Aligned_cols=289 Identities=13% Similarity=0.048 Sum_probs=192.0
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 004938 250 ALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENN 329 (722)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 329 (722)
+.+..++..+...+...|++++|.++|+++... ...+...+..++..+...|
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----------------------------~p~~~~~~~~~~~~~~~~~ 70 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK----------------------------DPFHASCLPVHIGTLVELN 70 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------CTTCTTTHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------------------CCCChhhHHHHHHHHHHhh
Confidence 344455555666666666666666665544221 1113344445555555666
Q ss_pred CchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-CchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004938 330 HPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG-VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVF 408 (722)
Q Consensus 330 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 408 (722)
++++|+.+++++.+.. +.+...+..+...+...| ++++|...+..+.+.. +.+...+..+...|...|++++|.+.|
T Consensus 71 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 148 (330)
T 3hym_B 71 KANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAY 148 (330)
T ss_dssp CHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 6666666666665532 223445555555566666 6666666666665543 334555666677777777777777777
Q ss_pred HhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcC--
Q 004938 409 ERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYN-- 482 (722)
Q Consensus 409 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 482 (722)
++..+ .+...|..+...|...|++++|+..|++..+. .| +...+..+...+...|++++|...++.+.+...
T Consensus 149 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 226 (330)
T 3hym_B 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226 (330)
T ss_dssp HHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc
Confidence 66543 34556666777777778888888888777764 33 345677777777888888888888877765321
Q ss_pred -----CCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch
Q 004938 483 -----IPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 483 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 555 (722)
.+.....+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..
T Consensus 227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp SCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 1344568888888899999999999888887 3333 56788889999999999999999999999999999989
Q ss_pred HHHHHHHh-hhCCCcc
Q 004938 556 LVLLSNIY-AKDKRWQ 570 (722)
Q Consensus 556 ~~~l~~~~-~~~g~~~ 570 (722)
+..++.++ ...|+.+
T Consensus 307 ~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 307 VTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhCchh
Confidence 99999888 4555543
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=6e-16 Score=170.29 Aligned_cols=407 Identities=11% Similarity=0.061 Sum_probs=225.3
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 004938 150 SDPFVQTGLVGMYGACGKILDARLMFDKMSYR---DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILS 226 (722)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 226 (722)
.+...|..++. +.+.|++++|+.+|+++... +...|..++..+.+.|++++|..+|++.... .|+...|...+.
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 34555555555 35556666666666665432 2223666666666666666666666666553 245444444443
Q ss_pred HH-HccCChHHHHH----HHHHHHHc-CCCC-CHhHHHHHHHHHHh---------cCChHHHHHHHHhcccCCc----hH
Q 004938 227 AC-SRAGNLSYGEA----VHEFIIDN-NVAL-DAHLQSTLITMYAN---------CGCMDMAKGLFDKVLLKNL----VV 286 (722)
Q Consensus 227 ~~-~~~g~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~----~~ 286 (722)
.. ...|+.+.|.+ +++.+++. |..| +..+|...+....+ .|+++.|..+|++.+.... ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 22 23344444443 45444432 3332 34555555555443 5666777777766654211 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH------HhCC---CCCCh-------
Q 004938 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEM------QVCG---MKPDK------- 350 (722)
Q Consensus 287 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g---~~p~~------- 350 (722)
|..........|. ..+..++.+ ..+++++|..++++. .+.. ++|+.
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 2221110000000 001111110 122334444444331 1111 12221
Q ss_pred -hhHHHHHHHHHc----cCCc----hHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCHH-------HHHHH
Q 004938 351 -VTMLSVISACAH----LGVL----DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK-------CGSLE-------SAREV 407 (722)
Q Consensus 351 -~t~~~ll~~~~~----~g~~----~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~ 407 (722)
..|...+..... .++. +.+..+++++++. .+.+..+|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 223333322111 1222 2556667766665 24456677777766664 57765 77788
Q ss_pred HHhcCC---C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 004938 408 FERMRR---R-NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG--VTFIGVLYACSHAGLVDEGREIFASMTNEY 481 (722)
Q Consensus 408 ~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 481 (722)
|++..+ | +...|..++..+.+.|++++|..+|+++++ +.|+. ..|...+..+.+.|++++|.++|+...+.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~- 385 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED- 385 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 877653 2 466777777777788888888888888777 45543 36777777777778888888888877752
Q ss_pred CCCCCcchHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc----
Q 004938 482 NIPPKYEHYGCMVDL-FGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG---- 554 (722)
Q Consensus 482 ~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---- 554 (722)
.+.+...|...+.+ +...|+.++|..+|++. ...| +...|..++..+...|+.++|..+|+++++..|.++.
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 22223333332222 23578888888888766 3334 4677777777777788888888888888877665544
Q ss_pred hHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 555 ALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 555 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
.+...+......|+.+.+.++.+++.+.
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5556666677778888888887777654
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=6.9e-18 Score=173.07 Aligned_cols=320 Identities=15% Similarity=0.157 Sum_probs=115.1
Q ss_pred hCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHH
Q 004938 164 ACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEF 243 (722)
Q Consensus 164 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 243 (722)
+.|++++|.+.++++..|+ .|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999996664 8999999999999999999999653 5778999999999999999999998888
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHH
Q 004938 244 IIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMIS 323 (722)
Q Consensus 244 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 323 (722)
..+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.++..|...|++++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 7774 45678899999999999999998888643 45556666666666666666666666655 35666666
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 004938 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403 (722)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 403 (722)
++.+.|++++|.+.++++ .+..||..++.+|...|+++.|.
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~--------------------------------- 197 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ--------------------------------- 197 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH---------------------------------
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHH---------------------------------
Confidence 666666666666666665 14556666666666666666653
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH--hcCCHHHHHHHHHHhHhh
Q 004938 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACS--HAGLVDEGREIFASMTNE 480 (722)
Q Consensus 404 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~--~~g~~~~a~~~~~~~~~~ 480 (722)
.....+. .++.....++..|.+.|++++|+.+++.... ..+. ...|+.+.-+++ +.+.+.+.++.|. ++
T Consensus 198 --~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ 269 (449)
T 1b89_A 198 --MCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFW---SR 269 (449)
T ss_dssp --HTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TT
T ss_pred --HHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HH
Confidence 3222222 1222222355566666666666666666554 2232 223333333333 3344444444443 22
Q ss_pred cCCCC------CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004938 481 YNIPP------KYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP 550 (722)
Q Consensus 481 ~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 550 (722)
-.++| +..+|.-++-.|...++++.|...+-+-+ |+..--........+-.+.|.--++..-.++..|
T Consensus 270 ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 270 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 34444 46778889999999999998887766552 2211122233334445554444444444444333
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=1.4e-17 Score=174.18 Aligned_cols=276 Identities=12% Similarity=-0.004 Sum_probs=208.2
Q ss_pred cCCHHHHHH-HHhccCCC-------CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchH
Q 004938 297 AGQVEDARL-IFDQMVEK-------DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQ 368 (722)
Q Consensus 297 ~g~~~~A~~-~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 368 (722)
.|++++|.. .|++.... +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 345555555 55543211 24557777777777788888888887777653 3355667777777777788888
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHHHHH---------------HHHHHHHcC
Q 004938 369 AQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--R-NVISWTS---------------MINAFAIHG 430 (722)
Q Consensus 369 a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~g 430 (722)
|...+..+++.. +.+..++..+...|...|++++|.+.|+++.+ | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 888777777764 44566777777788888888888888777653 1 2222211 133344889
Q ss_pred CHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 004938 431 DARNALIFFNKMKDESIDPN---GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507 (722)
Q Consensus 431 ~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 507 (722)
++++|+..|+++.+. .|+ ..++..+...+...|++++|...|+.+.+. .+.+...+..++..|.+.|++++|.
T Consensus 196 ~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 196 LFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999884 454 678889999999999999999999999873 4456788999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----------CchHHHHHHHhhhCCCcchHHH
Q 004938 508 ELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH-----------DGALVLLSNIYAKDKRWQDVGE 574 (722)
Q Consensus 508 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~ 574 (722)
+.++++ ...| +..+|..+...+...|++++|...+++++++.|++ ...+..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999987 3344 57889999999999999999999999999999887 7789999999999999999999
Q ss_pred HHHH
Q 004938 575 LRKS 578 (722)
Q Consensus 575 ~~~~ 578 (722)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=5.5e-18 Score=173.79 Aligned_cols=217 Identities=12% Similarity=0.123 Sum_probs=68.8
Q ss_pred CChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 004938 65 SSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGT 144 (722)
Q Consensus 65 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 144 (722)
|++++|..++++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+....
T Consensus 17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999997775 8999999999999999999999763 578899999999999999999999888877
Q ss_pred HhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 004938 145 KLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKI 224 (722)
Q Consensus 145 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 224 (722)
+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..+
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 74 55688899999999999999999988864 67778999999999999999999999876 257777
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHH
Q 004938 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDAR 304 (722)
Q Consensus 225 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 304 (722)
..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|.
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHH
Confidence 77777777777777776665 256677777777777777777755543322 22222223444444444444444
Q ss_pred HHHhcc
Q 004938 305 LIFDQM 310 (722)
Q Consensus 305 ~~f~~~ 310 (722)
.+++..
T Consensus 228 ~lLe~a 233 (449)
T 1b89_A 228 TMLEAA 233 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=6.6e-17 Score=165.95 Aligned_cols=265 Identities=11% Similarity=-0.002 Sum_probs=230.8
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHH
Q 004938 313 KDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392 (722)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li 392 (722)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...+..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 366778888999999999999999999998764 3455667778888899999999999999999864 45678889999
Q ss_pred HHHHhcC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004938 393 DMYAKCG-SLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVD 468 (722)
Q Consensus 393 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 468 (722)
..|...| ++++|.+.|++..+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 456789999999999999999999999999852 223567777889999999999
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHHcCCHHH
Q 004938 469 EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF----------APNVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 469 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~g~~~~ 537 (722)
+|...++.+.+ ..+.+...+..+...|.+.|++++|.+.++++ .. ..+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999987 44556788999999999999999999999876 11 3345789999999999999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999987653
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=1.4e-15 Score=165.63 Aligned_cols=319 Identities=9% Similarity=-0.015 Sum_probs=219.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHhcccC-CchHHHHHHHHHHh----cCCHH
Q 004938 231 AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN----CGCMDMAKGLFDKVLLK-NLVVSTAMVSGYSR----AGQVE 301 (722)
Q Consensus 231 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~ 301 (722)
.++.+.|...+....+.| +...+..|..+|.. .+++++|...|++.... +...+..+...|.. .++.+
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 344444444444444432 33333444444444 44444444444444333 23334444444443 44555
Q ss_pred HHHHHHhccCC-CCcchHHHHHHHHHh----cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCchHHHHH
Q 004938 302 DARLIFDQMVE-KDLICWSAMISGYAE----NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH----LGVLDQAQRI 372 (722)
Q Consensus 302 ~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~i 372 (722)
+|.+.|++..+ .+..++..+...|.. .++.++|+++|++..+.| +...+..+...+.. .++.++|...
T Consensus 169 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 169 MAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 55555555433 255667777777776 778888888888877754 44556666666654 6788888888
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChHHHHHHHHHHHHc-----CCHHHHHHHHHHH
Q 004938 373 HLYIDKNAFGGDLRVNNAIIDMYAK----CGSLESAREVFERMRR-RNVISWTSMINAFAIH-----GDARNALIFFNKM 442 (722)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m 442 (722)
+....+.+ +...+..+..+|.. .++.++|.+.|++..+ .+...+..+...|... ++.++|+..|++.
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 88877754 45566677777777 7889999999988765 4667788888888877 8999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCC
Q 004938 443 KDESIDPNGVTFIGVLYACSHAG---LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR----ANLLREALELVETMPF 515 (722)
Q Consensus 443 ~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 515 (722)
.+.| +...+..+...+...| +.++|.++|+...+. .+...+..|..+|.. .+++++|.+.+++.-.
T Consensus 323 ~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 323 AEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 8864 4456666777777656 789999999998873 456788889999988 8999999999998732
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCC---CCchHHHHHHHhhh
Q 004938 516 APNVVIWGSLMAACRV----HGEIELAEFAAKQLLQLDPD---HDGALVLLSNIYAK 565 (722)
Q Consensus 516 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 565 (722)
..+...+..|...|.. .++.++|...|+++.+.+|+ ++.....++.++..
T Consensus 396 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 396 QGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 3467788888888888 89999999999999999854 66666677666553
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.8e-15 Score=166.40 Aligned_cols=410 Identities=11% Similarity=0.057 Sum_probs=269.0
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 004938 182 DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLIT 261 (722)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 261 (722)
|...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+++.|..+++.+++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5667888887 47788999999999998865 34456678888888888899999999999888764 57777777665
Q ss_pred HH-HhcCChHHHHH----HHHhccc------CCchHHHHHHHHHHh---------cCCHHHHHHHHhccCCCCcchHHHH
Q 004938 262 MY-ANCGCMDMAKG----LFDKVLL------KNLVVSTAMVSGYSR---------AGQVEDARLIFDQMVEKDLICWSAM 321 (722)
Q Consensus 262 ~~-~~~g~~~~A~~----~~~~~~~------~~~~~~~~li~~~~~---------~g~~~~A~~~f~~~~~~~~~~~~~l 321 (722)
.. ...|+++.|.+ +|++... .+...|...+....+ .|+++.|..+|++..+........+
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 34577766655 5554421 234556665554433 4556666666665543211101111
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHH------HHcC---CCCC--------
Q 004938 322 ISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYI------DKNA---FGGD-------- 384 (722)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~------~~~~---~~~~-------- 384 (722)
-..|.. +++.. +..+...++. ...++++.|..++... .+.. ++|+
T Consensus 168 ~~~~~~---~e~~~-------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNK---YEEGI-------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHH---HHHHH-------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHH---HHHhh-------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 111110 00000 0000001110 1234566777766653 2221 2333
Q ss_pred hhHHHHHHHHHHhc----CCH----HHHHHHHHhcCC---CChHHHHHHHHHHHH-------cCCHH-------HHHHHH
Q 004938 385 LRVNNAIIDMYAKC----GSL----ESAREVFERMRR---RNVISWTSMINAFAI-------HGDAR-------NALIFF 439 (722)
Q Consensus 385 ~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~~~ 439 (722)
...|...+...... ++. +.|..+|++... .+...|..++..+.+ .|+.+ +|..+|
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 24666666544332 232 477788887764 467889988888876 69977 899999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc--chHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 004938 440 NKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY--EHYGCMVDLFGRANLLREALELVETM-PF 515 (722)
Q Consensus 440 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 515 (722)
++..+. +.|+ ...+..++..+.+.|++++|..+|+.+.+ .+|+. ..|..++..+.+.|++++|.++|++. ..
T Consensus 310 ~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 310 ERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 998863 3565 56788888999999999999999999987 34542 47899999999999999999999988 44
Q ss_pred CCC-HHHHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCc-cC-Cccc
Q 004938 516 APN-VVIWGSLMAA-CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL-KE-RACS 591 (722)
Q Consensus 516 ~p~-~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~-~~~s 591 (722)
.|+ ...|...... +...|+.++|..+|+++++..|+++..+..++.++.+.|+.++|..++++..+.+.. ++ ...-
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 443 3333332222 346899999999999999999999999999999999999999999999999887432 21 1112
Q ss_pred E---EEeCCEEEEEEeCCCCCcchHHHHHHHHHHHH
Q 004938 592 R---IEMNNEVYEFLTADRSHKQTDQIYEKLNEVIS 624 (722)
Q Consensus 592 ~---~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~ 624 (722)
| +.. ............+..++.+.+.
T Consensus 466 w~~~~~~-------e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 466 WARFLAF-------ESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHH-------HHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHH-------HHHcCCHHHHHHHHHHHHHHCc
Confidence 3 322 1111234456777777777764
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=9.5e-15 Score=158.98 Aligned_cols=361 Identities=11% Similarity=0.023 Sum_probs=299.6
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCChHHHHH
Q 004938 203 LNLFEEMKMSNVEPDEMVLSKILSACSR----AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYAN----CGCMDMAKG 274 (722)
Q Consensus 203 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 274 (722)
++.+....+.| +...+..+-..+.. .++++.|...+....+.| +...+..|...|.. .+++++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44455444433 55666666666666 789999999999988875 67788889999998 899999999
Q ss_pred HHHhcccC-CchHHHHHHHHHHh----cCCHHHHHHHHhccCCC-CcchHHHHHHHHHh----cCCchHHHHHHHHHHhC
Q 004938 275 LFDKVLLK-NLVVSTAMVSGYSR----AGQVEDARLIFDQMVEK-DLICWSAMISGYAE----NNHPQEALKLFNEMQVC 344 (722)
Q Consensus 275 ~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 344 (722)
.|++..+. +...+..+...|.. .++.++|.+.|++..+. +..++..|...|.. .+++++|+++|++..+.
T Consensus 101 ~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 101 WYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 99998765 56778888888888 89999999999987655 56788888888887 78999999999999886
Q ss_pred CCCCChhhHHHHHHHHHc----cCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CC
Q 004938 345 GMKPDKVTMLSVISACAH----LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK----CGSLESAREVFERMRR-RN 415 (722)
Q Consensus 345 g~~p~~~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~ 415 (722)
| +...+..+...+.. .++.++|...+....+.+ +...+..+..+|.. .+++++|.+.|++..+ .+
T Consensus 181 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 254 (490)
T 2xm6_A 181 G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN 254 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC
T ss_pred C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5 56777777778877 899999999999998865 56678888888886 8899999999998765 56
Q ss_pred hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhHhhcCCCCC
Q 004938 416 VISWTSMINAFAI----HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA-----GLVDEGREIFASMTNEYNIPPK 486 (722)
Q Consensus 416 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~ 486 (722)
...+..+...|.. .++.++|+..|++..+.| +...+..+...+... ++.++|..+|+...+. + +
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~ 327 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---D 327 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---C
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---C
Confidence 7788888888887 899999999999998754 455667777777777 8999999999999873 2 4
Q ss_pred cchHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCCchHHHH
Q 004938 487 YEHYGCMVDLFGRAN---LLREALELVETMPFAPNVVIWGSLMAACRV----HGEIELAEFAAKQLLQLDPDHDGALVLL 559 (722)
Q Consensus 487 ~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l 559 (722)
...+..|..+|.+.| ++++|.+.+++.-...+...+..|...|.. .+++++|...++++.+.+ ++.++..|
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L 405 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHH
Confidence 567788888888767 789999999988323578889999999988 899999999999998864 56789999
Q ss_pred HHHhhh----CCCcchHHHHHHHHHhCCC
Q 004938 560 SNIYAK----DKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 560 ~~~~~~----~g~~~~a~~~~~~m~~~g~ 584 (722)
+.+|.. .+++++|.+.+++..+.+.
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999998 8999999999999998763
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=6.5e-14 Score=159.51 Aligned_cols=349 Identities=14% Similarity=0.123 Sum_probs=271.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004938 186 WSVMIDGYFQNGLFDEVLNLFEEMKMSNV--EPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263 (722)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 263 (722)
-...+.+|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +...+.+.....-+ .....+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHH
Confidence 34567788889999999999998873321 11223444455555555 55666655554432 1234477788
Q ss_pred HhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 004938 264 ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV 343 (722)
Q Consensus 264 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (722)
...|.+++|..+|++.. ......+.+ +-..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+.
T Consensus 1060 i~lglyEEAf~IYkKa~-~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 88999999999999974 222222333 237889999999998774 4678999999999999999999999663
Q ss_pred CCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHH
Q 004938 344 CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMI 423 (722)
Q Consensus 344 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 423 (722)
-|...|..++.+|.+.|+++++.+.+...++.. ++..+.+.++.+|++.+++++..... ..++...|..+.
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVG 1202 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHH
Confidence 467788889999999999999999999988864 44444556999999999999655443 456777888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH
Q 004938 424 NAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLL 503 (722)
Q Consensus 424 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 503 (722)
..|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..++...|++
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHH
Confidence 9999999999999999985 379999999999999999999998763 357888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhC--CCcchHHHHHH
Q 004938 504 REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD--KRWQDVGELRK 577 (722)
Q Consensus 504 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 577 (722)
..|....... .-++..+..++..|...|.+++|+.++++.++++|.+.+.+..|+.+|++- ++..++.+.|.
T Consensus 1267 ~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1267 RLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999988754 335556668899999999999999999999999999999998888888764 56666666655
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=3.1e-17 Score=171.38 Aligned_cols=259 Identities=10% Similarity=-0.026 Sum_probs=209.5
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888889999999999999888753 3466778888888888999999999998888864 455778888899
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHH
Q 004938 394 MYAKCGSLESAREVFERMRRRN-------------VISWTSMINAFAIHGDARNALIFFNKMKDESIDP---NGVTFIGV 457 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~l 457 (722)
.|.+.|++++|.+.|+++.+.+ ...+..+...+...|++++|+..|+++... .| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 9999999999999998876411 223344578889999999999999999985 44 46788999
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 004938 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEI 535 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 535 (722)
...+...|++++|...|+.+.+ ..+.+...|..+..+|.+.|++++|++.++++ ...| +..+|..+...+...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999987 34556789999999999999999999999987 4445 478999999999999999
Q ss_pred HHHHHHHHHHHccCCC------------CCchHHHHHHHhhhCCCcchHHHHHHH
Q 004938 536 ELAEFAAKQLLQLDPD------------HDGALVLLSNIYAKDKRWQDVGELRKS 578 (722)
Q Consensus 536 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 578 (722)
++|...+++++++.|+ +...+..++.++...|+.+.+.++.+.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999877 356788999999999999988877654
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=7.3e-16 Score=154.82 Aligned_cols=268 Identities=9% Similarity=-0.025 Sum_probs=206.1
Q ss_pred HHhcCCHHHHHHHHhccCCCCc----chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHH
Q 004938 294 YSRAGQVEDARLIFDQMVEKDL----ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQA 369 (722)
Q Consensus 294 ~~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 369 (722)
....|++..|+..++.....++ .....+..+|...|++++|+..++.. -+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3445666777766776654432 23455677888888888888766441 355667777788888888888888
Q ss_pred HHHHHHHHHcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004938 370 QRIHLYIDKNAF-GGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESID 448 (722)
Q Consensus 370 ~~i~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 448 (722)
.+.++.++..+. +.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|++.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 888888887664 34566677788899999999999999998 567889999999999999999999999999985 5
Q ss_pred CCHHHH---HHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 004938 449 PNGVTF---IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWG 523 (722)
Q Consensus 449 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 523 (722)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++ ...| +..+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 765321 12334444568999999999999984 5677889999999999999999999999997 4455 577899
Q ss_pred HHHHHHHHcCCHHH-HHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHH
Q 004938 524 SLMAACRVHGEIEL-AEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL 575 (722)
Q Consensus 524 ~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 575 (722)
.++..+...|+.++ +..+++++++++|+++.. .+...+.+.++++..-
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 99999999998865 678999999999998743 3445555666655543
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.2e-14 Score=157.40 Aligned_cols=328 Identities=13% Similarity=0.031 Sum_probs=205.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHhccc-------C----CchHHHHHHHHHHhc--CCHHHHHHHHhccCC--C-Cc
Q 004938 252 DAHLQSTLITMYANCGCMDMAKGLFDKVLL-------K----NLVVSTAMVSGYSRA--GQVEDARLIFDQMVE--K-DL 315 (722)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~--g~~~~A~~~f~~~~~--~-~~ 315 (722)
...+|+.+..+|...|++++|...+++... + ...++..+..++.+. +++++|...|++..+ | ++
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~ 172 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP 172 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence 456788888999999999999988877632 1 234555555555554 468899999988743 2 44
Q ss_pred chHHHHHHH---HHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCchHHHHHHHHHHHcCCCCChhHH
Q 004938 316 ICWSAMISG---YAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH----LGVLDQAQRIHLYIDKNAFGGDLRVN 388 (722)
Q Consensus 316 ~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~ 388 (722)
..+..+... +...++.++|++.|++..+.. +.+..++..+...+.. .++.++|.+.++.+.+.. +.+..++
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 555555444 345677888999988887753 2244455555444443 467788888888887764 4566778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHcC
Q 004938 389 NAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIH-------------------GDARNALIFFNKMKDES 446 (722)
Q Consensus 389 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~g 446 (722)
..+...|.+.|++++|...|++..+ .+..+|..+...|... +..++|+..|++....
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~- 329 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA- 329 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-
Confidence 8888899999999999999988764 4556777777776532 2356677777777663
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc--chHHHHHHH-HHhcCCHHHHHHHHHhC-CCCCCHHH
Q 004938 447 IDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY--EHYGCMVDL-FGRANLLREALELVETM-PFAPNVVI 521 (722)
Q Consensus 447 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p~~~~ 521 (722)
.|+ ..++..+...+...|++++|...|+++.+. ...+.. ..+..+... +...|++++|++.+++. .+.|+...
T Consensus 330 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 330 -NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp -CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred -CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 343 446777778888888888888888887762 211111 122333322 34678888888888776 55666443
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccCCcccEE
Q 004938 522 WGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRI 593 (722)
Q Consensus 522 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 593 (722)
+... .+.+..++++.++.+|+++.++..|+.+|...|++++|.+.+++..+.+-......+|+
T Consensus 408 ~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 408 KEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 3222 34456677788888999999999999999999999999999999988775544455553
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=8.6e-16 Score=160.39 Aligned_cols=127 Identities=15% Similarity=0.067 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 494 (722)
..+|..+...|...|++++|+..|+++... .|+ ..++..+...+...|++++|...|+.+.+. .+.+...+..+.
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~ 292 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLG 292 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 334444444444444444444444444442 222 334444444445555555555555544431 222334444555
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 495 DLFGRANLLREALELVETM-PFAP------------NVVIWGSLMAACRVHGEIELAEFAAKQLL 546 (722)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 546 (722)
.+|.+.|++++|.+.++++ ...| ...+|..+..++...|+.++|..++++.+
T Consensus 293 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 5555555555555555443 1111 14566666666666666666666655443
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=5.4e-16 Score=158.86 Aligned_cols=260 Identities=10% Similarity=-0.052 Sum_probs=197.5
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 004938 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDM 394 (722)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 394 (722)
...|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3455666667777777777777777776643 2345566666667777777777777777776653 3456666777777
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004938 395 YAKCGSLESAREVFERMRR---RNVISWTSM--------------IN-AFAIHGDARNALIFFNKMKDESIDPNGVTFIG 456 (722)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 456 (722)
|...|++++|.+.|+++.+ .+...+..+ .. .+...|++++|+..++++.+.. +.+...+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 7777777777777776643 122222222 22 3667888999999999998852 335678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGE 534 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 534 (722)
+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 889999999999999999999873 4456788999999999999999999999987 3334 57889999999999999
Q ss_pred HHHHHHHHHHHHccCCC------------CCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 535 IELAEFAAKQLLQLDPD------------HDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 535 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
+++|...++++++..|+ ++..+..++.+|...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999 6788999999999999999999988754
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=3e-16 Score=163.87 Aligned_cols=231 Identities=11% Similarity=0.018 Sum_probs=196.7
Q ss_pred ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHH
Q 004938 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINA 425 (722)
Q Consensus 349 ~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 425 (722)
+...+..+...+.+.|++++|...++.+++.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568888899999999999999999999874 55788999999999999999999999998764 567899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNGV-----------TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 494 (722)
|...|++++|+..|+++.+. .|+.. .+..+...+...|++++|.++|+.+.+.....++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999883 44432 233457788999999999999999998532222678899999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchH
Q 004938 495 DLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572 (722)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 572 (722)
..|.+.|++++|++.++++ ...| +..+|..+...+...|++++|+..+++++++.|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3344 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 004938 573 GELRKSMKER 582 (722)
Q Consensus 573 ~~~~~~m~~~ 582 (722)
.+.++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=2.4e-15 Score=151.03 Aligned_cols=247 Identities=12% Similarity=0.078 Sum_probs=202.3
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 004938 322 ISGYAENNHPQEALKLFNEMQVCGMKPDK--VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG 399 (722)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 399 (722)
|.-....|++.+|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34566789999999999876543 4443 3556678899999999999875543 24567788889999999999
Q ss_pred CHHHHHHHHHhcC----CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004938 400 SLESAREVFERMR----RR-NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 400 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999874 23 566777888999999999999999987 456778888999999999999999999
Q ss_pred HHhHhhcCCCCCcchH---HHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004938 475 ASMTNEYNIPPKYEHY---GCMVDLFGRANLLREALELVETM--PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549 (722)
Q Consensus 475 ~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 549 (722)
+.+.+. .|+.... ..++..+...|++++|..+|+++ ..+++...|+.+..++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999874 3553211 23345555669999999999998 334578899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhhCCCcch-HHHHHHHHHhCC
Q 004938 550 PDHDGALVLLSNIYAKDKRWQD-VGELRKSMKERG 583 (722)
Q Consensus 550 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~g 583 (722)
|+++.++..++.++...|++++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987 568888887743
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=3.5e-14 Score=153.75 Aligned_cols=377 Identities=10% Similarity=0.026 Sum_probs=188.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHhcCC-----------CC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHC-----C-C
Q 004938 153 FVQTGLVGMYGACGKILDARLMFDKMS-----------YR-DIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-----N-V 214 (722)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~f~~m~-----------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~ 214 (722)
..||.|...|...|+.++|++.|++.. .+ ..++|+.+...|...|++++|...+++..+. + .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 345555555555555555555554321 11 2334556666666666666666666554321 0 1
Q ss_pred CC-CHhHHHHHHHHHH--ccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH---HHhcCChHHHHHHHHhccc--C-Cch
Q 004938 215 EP-DEMVLSKILSACS--RAGNLSYGEAVHEFIIDNNVALDAHLQSTLITM---YANCGCMDMAKGLFDKVLL--K-NLV 285 (722)
Q Consensus 215 ~p-~~~t~~~ll~~~~--~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~--~-~~~ 285 (722)
.+ ...++...-.++. ..+++++|...|+.+++..+ .++..+..+... +...++.++|.+.|++..+ | +..
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 11 1233433333332 23456667777776666532 234444444433 2334555666666655432 1 233
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHhccC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCC-hhhHHHHH
Q 004938 286 VSTAMVSGYSR----AGQVEDARLIFDQMV---EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPD-KVTMLSVI 357 (722)
Q Consensus 286 ~~~~li~~~~~----~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 357 (722)
++..+...+.. .|+.++|.+.+++.. ..+..++..+...|...|++++|+..|++..+. .|+ ..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHH
Confidence 34433333332 345556666666542 234556777777777888888888888777764 343 33344443
Q ss_pred HHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHH
Q 004938 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARN 434 (722)
Q Consensus 358 ~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 434 (722)
.++...+.. ..... ...........+..+.|...|+...+ .+..+|..+...|...|++++
T Consensus 289 ~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 289 CCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 333211100 00000 00000111112335677777776543 456788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004938 435 ALIFFNKMKDESIDPNGV--TFIGVLY-ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVE 511 (722)
Q Consensus 435 A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 511 (722)
|+..|++..+....|... .+..+.. ...+.|+.++|+..|.+..+ +.|+...... ..+.+..+++
T Consensus 353 A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~---------~~~~l~~~~~ 420 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEK---------MKDKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHH---------HHHHHHHHHH
Confidence 999999998853332221 2233322 34578999999999998876 3454332222 2233334444
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 512 TM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 512 ~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
+. ...| +..+|..|...+...|++++|++.|+++++++|.+|.+..-++
T Consensus 421 ~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 33 2233 5678999999999999999999999999999998887665544
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=2.8e-15 Score=153.45 Aligned_cols=270 Identities=10% Similarity=0.030 Sum_probs=156.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHH
Q 004938 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDARLIFDQMVE---KDLICWSAMISGYA 326 (722)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 326 (722)
...+..+...+.+.|++++|..+|+++... +...|..+...+.+.|++++|...|+++.+ .+..+|..+...+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 344556666777777777777777665322 334455555555555555555555555422 13344555555555
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHH-HH-HHHhcCCHHH
Q 004938 327 ENNHPQEALKLFNEMQVCGMKPDKV-TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAI-ID-MYAKCGSLES 403 (722)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~ 403 (722)
..|++++|++.|+++.... |+.. .+..+...+ ++......+ .. .+...|++++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 5555555555555555432 2211 111110000 000000011 11 2555666677
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 004938 404 AREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 404 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
|.+.++++.+ .+...|..+...|...|++++|+..++++.+. .| +..++..+...+...|++++|...|+.+.+
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777666542 35566777777777777777777777777664 33 345667777777777777777777777765
Q ss_pred hcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-------------VVIWGSLMAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 480 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~ 545 (722)
. .+.+...+..+...|.+.|++++|.+.++++ ...|+ ..+|..+..++...|+.++|...++++
T Consensus 235 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 I--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred c--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2 3345566777777777777777777777765 22233 567778888888888888888887766
Q ss_pred HccCC
Q 004938 546 LQLDP 550 (722)
Q Consensus 546 ~~~~p 550 (722)
++..|
T Consensus 313 l~~~~ 317 (327)
T 3cv0_A 313 VEPFA 317 (327)
T ss_dssp SHHHH
T ss_pred HHhcc
Confidence 65443
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=9.4e-17 Score=177.18 Aligned_cols=131 Identities=11% Similarity=0.123 Sum_probs=115.2
Q ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHhcCC-------CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHH
Q 004938 149 GSDPFVQTGLVGMYGACGKILDARLMFDKMS-------YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVL 221 (722)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 221 (722)
..-..+||+||++||++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 4445789999999999999999999997763 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCh-HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhc
Q 004938 222 SKILSACSRAGNL-SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279 (722)
Q Consensus 222 ~~ll~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 279 (722)
+++|.++++.|+. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999985 789999999999999999999999998877766555555554333
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=3e-16 Score=173.25 Aligned_cols=151 Identities=10% Similarity=0.119 Sum_probs=97.6
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh---CCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHH
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQV---CGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII 392 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li 392 (722)
.+||+||.+|++.|+.++|.++|++|.+ .|+.||.+|||++|.+|++.|++++|.++|..|.+.|+.|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P--------- 198 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP--------- 198 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC---------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---------
Confidence 4666666666666666666666665542 3556666666666666666666666666666665555555
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004938 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGD-ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGR 471 (722)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 471 (722)
|++|||+||.++++.|+ .++|.++|++|.+.|+.||.+||++++.++.+.+-++..
T Consensus 199 ----------------------DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V- 255 (1134)
T 3spa_A 199 ----------------------DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV- 255 (1134)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH-
T ss_pred ----------------------cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH-
Confidence 55555556666666666 467889999999999999999999998877665444443
Q ss_pred HHHHHhHhhcCCC----CCcchHHHHHHHHHhcC
Q 004938 472 EIFASMTNEYNIP----PKYEHYGCMVDLFGRAN 501 (722)
Q Consensus 472 ~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g 501 (722)
+.+..++..+ |...+...|.+.|.+.+
T Consensus 256 ---rkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 256 ---HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp ---GGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred ---HHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 3333222221 22455667888888766
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.7e-14 Score=138.83 Aligned_cols=214 Identities=14% Similarity=0.051 Sum_probs=143.9
Q ss_pred HHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----C----hHHHHHHHHH
Q 004938 356 VISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--R----N----VISWTSMINA 425 (722)
Q Consensus 356 ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~ 425 (722)
+...+...|++++|...+..+++.. .+..++..+...|...|++++|.+.|++..+ | + ...|..+...
T Consensus 11 ~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 88 (258)
T 3uq3_A 11 EGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNA 88 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHH
Confidence 3333444444444444444444433 3344444445555555555555555544432 1 1 4566677777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 505 (722)
|...|++++|+..|++.... .|+. ..+...|++++|...++.+.. ..+.+...+..+...+...|++++
T Consensus 89 ~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 89 YHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHH
Confidence 77777777777777777763 4553 235556777888888877765 233345677778888888888888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 506 ALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 506 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
|.+.++++ ...| +..+|..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888776 3233 56788888888888889999999999998888888888888889999999999998888887664
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=4.1e-14 Score=135.53 Aligned_cols=194 Identities=10% Similarity=-0.007 Sum_probs=154.8
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 004938 382 GGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGV 457 (722)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 457 (722)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45667778888888899999999999988764 45678888889999999999999999998884 565 4577888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 004938 458 LYACSHA-----------GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSL 525 (722)
Q Consensus 458 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 525 (722)
..++... |++++|...|+...+ ..|.+...+..+..+|...|++++|++.+++. ....+...|..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 999999999999987 33445788899999999999999999999987 222678899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 526 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
...+...|++++|+..++++++++|+++..+..++.++...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988765
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=7.3e-14 Score=139.05 Aligned_cols=241 Identities=10% Similarity=-0.052 Sum_probs=190.8
Q ss_pred hcCCchHHHHHHHHHHhCCC--C-CChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 004938 327 ENNHPQEALKLFNEMQVCGM--K-PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403 (722)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~g~--~-p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 403 (722)
..|++++|+..|+++.+... . .+..++..+..++...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34778888888888887532 1 135567777888888899999999998888864 4567888889999999999999
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 004938 404 AREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480 (722)
Q Consensus 404 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 480 (722)
|.+.|++..+ .+...|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998764 4678899999999999999999999999998 4677665555666667889999999999888773
Q ss_pred cCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 481 YNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 481 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 44554444 4777788888999999999887 33332 578889999999999999999999999999998754
Q ss_pred hHHHHHHHhhhCCCcchHHHHH
Q 004938 555 ALVLLSNIYAKDKRWQDVGELR 576 (722)
Q Consensus 555 ~~~~l~~~~~~~g~~~~a~~~~ 576 (722)
. .+.++...|++++|.+.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 3 356778889998887765
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.4e-14 Score=138.38 Aligned_cols=234 Identities=13% Similarity=0.006 Sum_probs=184.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCC--CC----hhHHH
Q 004938 316 ICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG--GD----LRVNN 389 (722)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~--~~----~~~~~ 389 (722)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+++.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456677778888888888888888887765 67777788888888888888888888877764211 11 46778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 004938 390 AIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGL 466 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 466 (722)
.+...|.+.|++++|.+.|++..+ ++. ..+...|++++|+..++++... .|+ ...+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcC
Confidence 888888889999999888888764 442 3456678889999999998883 454 3467788888999999
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004938 467 VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQ 544 (722)
Q Consensus 467 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 544 (722)
+++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999998873 4556788899999999999999999999887 3344 478899999999999999999999999
Q ss_pred HHccC------CCCCchHHHHHHH
Q 004938 545 LLQLD------PDHDGALVLLSNI 562 (722)
Q Consensus 545 ~~~~~------p~~~~~~~~l~~~ 562 (722)
+++++ |++...+..+..+
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHhChhhcCCCchHHHHHHHHHh
Confidence 99998 8776666655543
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=1e-13 Score=137.89 Aligned_cols=243 Identities=13% Similarity=-0.001 Sum_probs=120.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHc
Q 004938 288 TAMVSGYSRAGQVEDARLIFDQMVEK---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDK--VTMLSVISACAH 362 (722)
Q Consensus 288 ~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~ 362 (722)
......+.+.|++++|...|++..+. +...|..+...|...|++++|+..|++..+.+-.|+. .++..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 33444555555555555555554221 3334555555555555555555555555542211111 114444444555
Q ss_pred cCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442 (722)
Q Consensus 363 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 442 (722)
.|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|+ +.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-------------------------------~a 134 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYME-------------------------------KQ 134 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHG-------------------------------GG
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHH-------------------------------HH
Confidence 555555555555554432 2233444444444444555555554444 44
Q ss_pred HHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC---HHHHHHHHHhC----C
Q 004938 443 KDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL---LREALELVETM----P 514 (722)
Q Consensus 443 ~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~----~ 514 (722)
.+. .|+ ...+..+...+...+++++|.+.|+.+.+. .+.+...+..+...+...|+ +++|...++++ .
T Consensus 135 l~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 135 IRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp CCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred hhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 432 222 222333331222333555555555544441 22223344444444444444 43444444333 1
Q ss_pred CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhC
Q 004938 515 FAPN------VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD 566 (722)
Q Consensus 515 ~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 566 (722)
..|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 1122 256777888899999999999999999999999987777766655443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=8.3e-13 Score=141.52 Aligned_cols=377 Identities=8% Similarity=-0.012 Sum_probs=174.7
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCC-CcccHHHHHHHHHhCCCh---hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC-
Q 004938 158 LVGMYGACGKILDARLMFDKMSYR-DIVPWSVMIDGYFQNGLF---DEVLNLFEEMKMSNVEPDEMVLSKILSACSRAG- 232 (722)
Q Consensus 158 li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g- 232 (722)
+...+.+.|++++|.++|++..++ +...+..|...|...|+. ++|++.|++..+. +...+..+-..+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 445556667777777777665432 444555566666666666 6777777666543 3333444444333333
Q ss_pred ----ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHh
Q 004938 233 ----NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFD 308 (722)
Q Consensus 233 ----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 308 (722)
+.++|...++...+.|.. ..+..|..+|...+..+.+.+.++. +.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~----------------------------~~ 133 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQ----------------------------IS 133 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHH----------------------------HH
T ss_pred CCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHH----------------------------HH
Confidence 556677777776665532 2555566666555443332222111 11
Q ss_pred ccC-CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---CchHHHHHHHHHHHcCCCCC
Q 004938 309 QMV-EKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG---VLDQAQRIHLYIDKNAFGGD 384 (722)
Q Consensus 309 ~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~i~~~~~~~~~~~~ 384 (722)
... ..+...+..+...|...+.++++........+.-...+...+..+...+...| +.++|...+....+.| +++
T Consensus 134 ~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~ 212 (452)
T 3e4b_A 134 QWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVT 212 (452)
T ss_dssp HHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSC
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHH
Confidence 111 11233444444444444433333332222211111112223444444444444 4445555555544443 222
Q ss_pred hhHHHHHHHHHHhc----CCHHHHHHHHHhcCCCChHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004938 385 LRVNNAIIDMYAKC----GSLESAREVFERMRRRNVISWTSMINA-F--AIHGDARNALIFFNKMKDESIDPNGVTFIGV 457 (722)
Q Consensus 385 ~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 457 (722)
...+..|..+|... +++++|.+.|++....+...+..+... | ...++.++|++.|++..+.| +...+..+
T Consensus 213 a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~L 289 (452)
T 3e4b_A 213 AQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLL 289 (452)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 22223444444333 456666666655553344455555554 2 34666777777777766654 44445555
Q ss_pred HHHHHhcC-----CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004938 458 LYACSHAG-----LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR----ANLLREALELVETMPFAPNVVIWGSLMAA 528 (722)
Q Consensus 458 l~a~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~ 528 (722)
...|. .| ++++|.++|+... +-+...+..|..+|.. ..++++|...|++.-...+......|...
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~ 363 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQL 363 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 55454 34 6777777776554 2344555666666654 33777777777766212233344445555
Q ss_pred HHH----cCCHHHHHHHHHHHHccCCCCCchHHHHHHHh--hhCCCcchHHHHHHHHHh
Q 004938 529 CRV----HGEIELAEFAAKQLLQLDPDHDGALVLLSNIY--AKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 529 ~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~ 581 (722)
|.. ..+.++|...++++.+.++.. ....+..+. ...+..++|.++.++-++
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 543 457888888888887766543 333333333 233455566666555443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=3.1e-12 Score=125.47 Aligned_cols=166 Identities=13% Similarity=0.015 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSH 463 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 463 (722)
+..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++...+..|+ ...+..+...+..
T Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 153 (252)
T 2ho1_A 74 HAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ 153 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH
Confidence 33344444444444444444443321 2344455555555555666666666655554223343 2345555556666
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFA 541 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 541 (722)
.|++++|..+|+.+.+. .+.+...+..++..|.+.|++++|.+.++++ ...| +...|..+...+...|+.++|...
T Consensus 154 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 231 (252)
T 2ho1_A 154 MKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASY 231 (252)
T ss_dssp TTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 66666666666666542 2333455566666666666666666666655 2223 445566666666777777777777
Q ss_pred HHHHHccCCCCCch
Q 004938 542 AKQLLQLDPDHDGA 555 (722)
Q Consensus 542 ~~~~~~~~p~~~~~ 555 (722)
++++++..|+++..
T Consensus 232 ~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 232 GLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHCTTSHHH
T ss_pred HHHHHHHCCCCHHH
Confidence 77777777766543
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=2.9e-12 Score=137.22 Aligned_cols=342 Identities=10% Similarity=0.006 Sum_probs=221.6
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh---HHHHHHHHhcccCCchHHHHHHHHHHhcC----
Q 004938 226 SACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM---DMAKGLFDKVLLKNLVVSTAMVSGYSRAG---- 298 (722)
Q Consensus 226 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g---- 298 (722)
..+.+.|++++|.+.+..+.+.| +...+..|..+|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 33445566666666666665554 223334445555555655 66666666665555555555555444443
Q ss_pred -CHHHHHHHHhccCCC-CcchHHHHHHHHHhcCCch---HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHH
Q 004938 299 -QVEDARLIFDQMVEK-DLICWSAMISGYAENNHPQ---EALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIH 373 (722)
Q Consensus 299 -~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~ 373 (722)
+.++|...|++..++ +..++..|...|...+..+ ++++.+......| +......+...+...+.++++....
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 566777777776544 5567788888887766543 4566666665544 3445666667777777665555443
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhcCC---CChHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 004938 374 LYIDKNAFGGDLRVNNAIIDMYAKCG---SLESAREVFERMRR---RNVISWTSMINAFAIH----GDARNALIFFNKMK 443 (722)
Q Consensus 374 ~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~ 443 (722)
....+.-...+...+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|+..|++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 33333323344458889999999999 99999999988764 3444456777777554 68999999999987
Q ss_pred HcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC-----CHHHHHHHHHhCCC
Q 004938 444 DESIDPNGVTFIGVLYA-C--SHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN-----LLREALELVETMPF 515 (722)
Q Consensus 444 ~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~ 515 (722)
.| +...+..+... + ...++.++|.++|+...+. | +...+..|..+|. .| ++++|.+.|++.-
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 33 33445555554 3 4689999999999998873 3 5667788888887 55 9999999999998
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh----CCCcchHHHHHHHHHhCCCc
Q 004938 516 APNVVIWGSLMAACRV----HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK----DKRWQDVGELRKSMKERGIL 585 (722)
Q Consensus 516 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 585 (722)
..+...+..|...|.. ..++++|...|+++.+. .++.....|+.+|.. ..+.++|...++...+.|..
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 5677888888877765 34999999999999874 556789999999975 45899999999999888753
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=1.5e-12 Score=135.22 Aligned_cols=243 Identities=10% Similarity=0.037 Sum_probs=199.6
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCC-chHHHHHHHHHHHcCCCCChhHHHHHH
Q 004938 315 LICWSAMISGYAENNHPQEALKLFNEMQVCGMKP-DKVTMLSVISACAHLGV-LDQAQRIHLYIDKNAFGGDLRVNNAII 392 (722)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~-~~~a~~i~~~~~~~~~~~~~~~~~~li 392 (722)
...|+.+...+.+.|++++|+..|++.+.. .| +...|..+..++...|+ +++|...++.+++.. +.+..+|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 356888888899999999999999999875 44 45677788888888996 999999999998875 45678889999
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-cCCH
Q 004938 393 DMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSH-AGLV 467 (722)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~ 467 (722)
.+|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|+++++. .|+ ...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999998764 57789999999999999999999999999984 565 5678888888888 6665
Q ss_pred HHH-----HHHHHHhHhhcCCCCCcchHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC------
Q 004938 468 DEG-----REIFASMTNEYNIPPKYEHYGCMVDLFGRAN--LLREALELVETMPFAPN-VVIWGSLMAACRVHG------ 533 (722)
Q Consensus 468 ~~a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g------ 533 (722)
++| ++.|+.+++ ..+.+...|..+..+|.+.| ++++|++.++++...|+ ...+..+...+...|
T Consensus 252 ~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 777 588888876 33445678888999999888 68999999988855554 578888888888764
Q ss_pred --C-HHHHHHHHHHH-HccCCCCCchHHHHHHHhh
Q 004938 534 --E-IELAEFAAKQL-LQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 534 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~ 564 (722)
+ +++|+.+++++ .+++|.....|..++..+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 2 58999999999 9999999888888777654
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=5.1e-13 Score=130.10 Aligned_cols=172 Identities=13% Similarity=0.065 Sum_probs=92.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 464 (722)
+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...
T Consensus 60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 33333444444444444444443321 234445555555555555555655555555531 22344455555555566
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 004938 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAA 542 (722)
Q Consensus 465 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 542 (722)
|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...+
T Consensus 139 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 139 EQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 6666666666655542 2334445555666666666666666666554 2222 3556666666677777777777777
Q ss_pred HHHHccCCCCCchHHHHHHH
Q 004938 543 KQLLQLDPDHDGALVLLSNI 562 (722)
Q Consensus 543 ~~~~~~~p~~~~~~~~l~~~ 562 (722)
+++++++|+++..+..++.+
T Consensus 217 ~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 217 DKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHccCcchHHHHHHHHHH
Confidence 77777777766555554443
No 47
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.48 E-value=8e-11 Score=130.40 Aligned_cols=435 Identities=9% Similarity=0.048 Sum_probs=284.8
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCC---HHH
Q 004938 94 WSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGK---ILD 170 (722)
Q Consensus 94 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~ 170 (722)
+.....+.+..|++.+...+ -|..+|..++..+.+.+.++.++.+|+.++.. ++.....|...+..-.+.|+ .+.
T Consensus 44 ~~~~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 44 RVRDESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp --CCCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHH
T ss_pred cccCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHH
Confidence 33445666767777766654 37888999999888888999999999998887 46677788888888888888 999
Q ss_pred HHHHHhcCCC-----CCcccHHHHHHHHHhCCCh--------hHHHHHHHHHH-HCCC-CCC-HhHHHHHHHHHHc----
Q 004938 171 ARLMFDKMSY-----RDIVPWSVMIDGYFQNGLF--------DEVLNLFEEMK-MSNV-EPD-EMVLSKILSACSR---- 230 (722)
Q Consensus 171 A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~-~~g~-~p~-~~t~~~ll~~~~~---- 230 (722)
+..+|++... +++..|..-+....+.++. +...++|+... ..|. .|+ ...|...+.....
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc
Confidence 9999987653 5555677766655554443 23346666654 3465 554 3455555544322
Q ss_pred -----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHH
Q 004938 231 -----AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARL 305 (722)
Q Consensus 231 -----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 305 (722)
.++++.+..+|..++......-..+|......-...+. ..+.+++.+. ..+++.|..
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-----------------~~~y~~Ar~ 263 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-----------------SAQYMNARS 263 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-----------------HHHHHHHHH
T ss_pred CcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-----------------hHHHHHHHH
Confidence 23456677777777753222122333322221111111 1122221110 011222222
Q ss_pred HHhc-------cCC--------------C--C------cchHHHHHHHHHhcCC-------chHHHHHHHHHHhCCCCCC
Q 004938 306 IFDQ-------MVE--------------K--D------LICWSAMISGYAENNH-------PQEALKLFNEMQVCGMKPD 349 (722)
Q Consensus 306 ~f~~-------~~~--------------~--~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~ 349 (722)
.+.+ +.. | + ...|...+.---.++. .+.+..+|++.+.. .+-+
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFA 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTC
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCC
Confidence 2221 100 0 0 1346555554433331 23355678887765 2335
Q ss_pred hhhHHHHHHHHHccCCchHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC
Q 004938 350 KVTMLSVISACAHLGVLDQAQ-RIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-------------RN 415 (722)
Q Consensus 350 ~~t~~~ll~~~~~~g~~~~a~-~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~ 415 (722)
...|...+.-+...|+.+.|. .+++..+.. ++.+...+-.++....+.|+++.|.++|+++.. |+
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 667777777777889999996 999999875 456677788899999999999999999998763 21
Q ss_pred ------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhHhhc
Q 004938 416 ------------VISWTSMINAFAIHGDARNALIFFNKMKDE-SIDPNGVTFIGVLYACSHA-GLVDEGREIFASMTNEY 481 (722)
Q Consensus 416 ------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~ 481 (722)
...|-..+....+.|+.+.|..+|.+..+. +. +....|...+..-.+. ++.+.|..+|+...+.
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 236888888888899999999999999875 21 1223343332222333 5589999999999985
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 482 NIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP----NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 482 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
.+.+...+...++.....|+.+.|..+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|+++
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 4455667788899889999999999999987 3333 246899999999999999999999999999999875
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=2.3e-12 Score=126.39 Aligned_cols=197 Identities=10% Similarity=-0.041 Sum_probs=171.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 461 (722)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45667788888899999999999988753 467889999999999999999999999998852 33567888889999
Q ss_pred HhcCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 004938 462 SHAGLVDEGREIFASMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELA 538 (722)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 538 (722)
...|++++|.++++.+.+ .+..| +...+..++..|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999886 23444 4677888999999999999999999987 3334 578899999999999999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
...++++++..|++...+..++.+|...|++++|.+.++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998754
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=1.5e-11 Score=122.29 Aligned_cols=224 Identities=11% Similarity=-0.024 Sum_probs=132.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCchHHHHHHHHHHHcCCCCChhHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAH----LGVLDQAQRIHLYIDKNAFGGDLRVNN 389 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~ 389 (722)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 34455555555666666666666666655521 23334444444444 455555555554444432
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 004938 390 AIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI----HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH-- 463 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-- 463 (722)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 34444555555555 555566666665555542 44455555555555
Q ss_pred --cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 004938 464 --AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR----ANLLREALELVETMPFAPNVVIWGSLMAACRV----HG 533 (722)
Q Consensus 464 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g 533 (722)
.+++++|..+|+...+. + +...+..+...|.. .+++++|.+.+++.-...+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 56666666666665542 2 33445555556655 66666666666655111245666667777777 77
Q ss_pred CHHHHHHHHHHHHccCCCCCchHHHHHHHhhh----CCCcchHHHHHHHHHhCC
Q 004938 534 EIELAEFAAKQLLQLDPDHDGALVLLSNIYAK----DKRWQDVGELRKSMKERG 583 (722)
Q Consensus 534 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 583 (722)
++++|...++++++.+| +..+..++.+|.. .+++++|.+.+++..+.|
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 88888888888877765 4567777888877 788888888888777665
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=9.8e-13 Score=128.09 Aligned_cols=197 Identities=13% Similarity=0.146 Sum_probs=156.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 460 (722)
....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 455667777888889999999999988764 467889999999999999999999999998852 3356788888999
Q ss_pred HHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 004938 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELA 538 (722)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 538 (722)
+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999873 4556788999999999999999999999987 3333 678899999999999999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
...++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998754
No 51
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=2.6e-12 Score=122.93 Aligned_cols=194 Identities=14% Similarity=0.029 Sum_probs=106.4
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++.+++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34456666666666666666666666666542 2244555555566666666666666666666553 334455556666
Q ss_pred HHHhc-----------CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004938 394 MYAKC-----------GSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLY 459 (722)
Q Consensus 394 ~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 459 (722)
.|.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66665 666666666665542 234556666666666666666666666666644 45555666666
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
++...|++++|...|+.+.+ ..|.+...+..+..++.+.|++++|.+.+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666655 22334455555666666666666666655543
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=3.7e-12 Score=122.19 Aligned_cols=195 Identities=11% Similarity=0.018 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYAC 461 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 461 (722)
..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.... +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 33444555555555555555555554432 234455555555666666666666666655531 22344555555556
Q ss_pred Hhc-CCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 004938 462 SHA-GLVDEGREIFASMTNEYNIPP-KYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 462 ~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 537 (722)
... |++++|..+++.+.+ .+..| +...+..+...+...|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 666 666666666666554 12222 2345555666666666666666666555 2223 35556666666666666666
Q ss_pred HHHHHHHHHccCC-CCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 538 AEFAAKQLLQLDP-DHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 538 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
|...++++++..| ++...+..++.++...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666666 6666666666666666666666666666554
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=6e-12 Score=120.68 Aligned_cols=203 Identities=10% Similarity=-0.046 Sum_probs=134.7
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHc-
Q 004938 354 LSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIH- 429 (722)
Q Consensus 354 ~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~- 429 (722)
..+...+...|++++|.+.+..+.+.. +.+...+..+...|...|++++|.+.|++..+ .+..+|..+...|...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc
Confidence 333334444444444444444444332 22344455555556666666666666655432 3455667777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 004938 430 GDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508 (722)
Q Consensus 430 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 508 (722)
|++++|+..|+++.+.+..|+ ...+..+..++...|++++|...|+.+.+. .+.+...+..++..|.+.|++++|.+
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 778888888877776333344 346677777788888888888888887762 33456777788888888888888888
Q ss_pred HHHhC-CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 004938 509 LVETM-PFA--PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLL 559 (722)
Q Consensus 509 ~~~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 559 (722)
.++++ ... .+...|..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 88876 222 3566777777778899999999999999999999987655443
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=1.2e-11 Score=122.89 Aligned_cols=229 Identities=9% Similarity=-0.045 Sum_probs=155.4
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHhccCCC-CcchHHHHHHHHHh----cCCchHHHHHHHHHHhCCCCCChhhHHHHH
Q 004938 283 NLVVSTAMVSGYSRAGQVEDARLIFDQMVEK-DLICWSAMISGYAE----NNHPQEALKLFNEMQVCGMKPDKVTMLSVI 357 (722)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 357 (722)
+..++..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5667888999999999999999999988665 56788889999999 999999999999999875 666777777
Q ss_pred HHHHc----cCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Q 004938 358 SACAH----LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDAR 433 (722)
Q Consensus 358 ~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 433 (722)
..+.. .+++++|...++...+.+ +...+..+...|.... ...++++
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~~~~ 131 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTRDFK 131 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCCCHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------CcccCHH
Confidence 77777 778888887777776653 4445555555555400 0044455
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCCHHH
Q 004938 434 NALIFFNKMKDESIDPNGVTFIGVLYACSH----AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR----ANLLRE 505 (722)
Q Consensus 434 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 505 (722)
+|+..|++..+.+ +...+..+...+.. .+++++|..+|+...+. .+...+..+..+|.. .+++++
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 5555555544432 23334444444444 55555555555555542 123445555666666 666666
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCC
Q 004938 506 ALELVETM-PFAPNVVIWGSLMAACRV----HGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 506 A~~~~~~~-~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 552 (722)
|++.+++. ... +...+..+...+.. .+++++|...++++++++|++
T Consensus 205 A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 205 ALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 66666655 222 35566677777777 888889999999998888864
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=8.6e-12 Score=123.77 Aligned_cols=224 Identities=9% Similarity=-0.022 Sum_probs=162.0
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcCCHHHHHHHHhccCC--CCcc----hHHHHHH
Q 004938 253 AHLQSTLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAGQVEDARLIFDQMVE--KDLI----CWSAMIS 323 (722)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~----~~~~li~ 323 (722)
...+......+.+.|++++|...|++..+. +...|..+...|.+.|++++|...|++..+ .+.. +|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445667788899999999999999998543 456899999999999999999999998755 2322 4889999
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHH-HHHHhcCCHH
Q 004938 324 GYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAII-DMYAKCGSLE 402 (722)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~ 402 (722)
.+...|++++|+..|++..+.. +.+..++..+...+...|++++|...+..+++.. +.+...+..+. ..|. .++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999999998863 3356788899999999999999999999988762 44556666666 4443 44777
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHHhcCCHHH
Q 004938 403 SAREVFERMRR---RNVISWTSMINAFAIHGD---ARNALIFFNKMKDES-IDPNG------VTFIGVLYACSHAGLVDE 469 (722)
Q Consensus 403 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~~ 469 (722)
+|.+.|++..+ .+...|..+...+...|+ .++|+..|++..+.. -.|+. .+|..+...+...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777776653 335566666666666666 666777666665521 11321 244455555556666666
Q ss_pred HHHHHHHhHh
Q 004938 470 GREIFASMTN 479 (722)
Q Consensus 470 a~~~~~~~~~ 479 (722)
|.+.|+.+.+
T Consensus 240 A~~~~~~al~ 249 (272)
T 3u4t_A 240 ADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666554
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=5.4e-13 Score=141.44 Aligned_cols=263 Identities=11% Similarity=-0.021 Sum_probs=178.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCCCCh-----hhHHHHHHHHHccCCchHHHHHHHHHHHc----C-CCCChhH
Q 004938 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDK-----VTMLSVISACAHLGVLDQAQRIHLYIDKN----A-FGGDLRV 387 (722)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~-~~~~~~~ 387 (722)
+..+...+...|++++|+..|+++.+.+ |+. ..+..+...+...|++++|...+..+++. + .+....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3344555666666666666666666542 221 24555556666667777776666665542 1 1123445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---------CChHHHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRR---------RNVISWTSMINAFAIHGD-----------------ARNALIFFNK 441 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 441 (722)
+..+...|...|++++|...|++..+ ....+|..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 66677777777777777777766542 123467777777888888 8888888777
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 442 MKDE----SIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELVET 512 (722)
Q Consensus 442 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 512 (722)
..+. +..|. ..++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|.+.+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6541 11122 236677777888888888888888887653211111 22677888888999999999888877
Q ss_pred C----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------CchHHHHHHHhhhCCCcchHHHHHHH
Q 004938 513 M----PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH------DGALVLLSNIYAKDKRWQDVGELRKS 578 (722)
Q Consensus 513 ~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 578 (722)
. +...+ ..+|..+...+...|++++|...+++++++.++. ...+..++.+|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6 11111 4677888888999999999999999998875443 33778899999999999999999998
Q ss_pred HHhC
Q 004938 579 MKER 582 (722)
Q Consensus 579 m~~~ 582 (722)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8663
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=2.6e-12 Score=135.60 Aligned_cols=263 Identities=11% Similarity=0.015 Sum_probs=171.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHccCCchHHHHHHHHHHHc----CCC-CChh
Q 004938 317 CWSAMISGYAENNHPQEALKLFNEMQVCGMKPD-----KVTMLSVISACAHLGVLDQAQRIHLYIDKN----AFG-GDLR 386 (722)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~-~~~~ 386 (722)
.+......+...|++++|+..|++..+.+ |+ ...+..+...+...|++++|...+..+.+. +.. ....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34455556666666666666666666542 22 134555556666666777776666655432 111 1234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCC--------------------HHHHHH
Q 004938 387 VNNAIIDMYAKCGSLESAREVFERMRR-----RN----VISWTSMINAFAIHGD--------------------ARNALI 437 (722)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 437 (722)
++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 556666777777777777777766543 12 3366777777777777 778877
Q ss_pred HHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHH
Q 004938 438 FFNKMKDE----SIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALE 508 (722)
Q Consensus 438 ~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~ 508 (722)
.+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77765441 11121 235667777788888888888888877653211122 2367777888888888888888
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------CchHHHHHHHhhhCCCcchHHH
Q 004938 509 LVETM----PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH------DGALVLLSNIYAKDKRWQDVGE 574 (722)
Q Consensus 509 ~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 574 (722)
.+++. +..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88765 11112 4567777888888888888888888888765443 3467788888888888888888
Q ss_pred HHHHHHh
Q 004938 575 LRKSMKE 581 (722)
Q Consensus 575 ~~~~m~~ 581 (722)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=2.3e-11 Score=120.81 Aligned_cols=242 Identities=12% Similarity=-0.004 Sum_probs=154.8
Q ss_pred CCChhHHHHHHHHHHHCCCC---CCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHH
Q 004938 196 NGLFDEVLNLFEEMKMSNVE---PDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMA 272 (722)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 272 (722)
.|++++|++.|+++.+.... .+..++..+...+...|+++.|...++.+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777777654221 124455666666667777777777777776653 23566666667777777777777
Q ss_pred HHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhh
Q 004938 273 KGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVT 352 (722)
Q Consensus 273 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 352 (722)
...|++... +...+..+|..+...|...|++++|+..|+++.+. .|+...
T Consensus 97 ~~~~~~al~----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~ 146 (275)
T 1xnf_A 97 YEAFDSVLE----------------------------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPF 146 (275)
T ss_dssp HHHHHHHHH----------------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHh----------------------------cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChH
Confidence 666544321 12235667888888888888888888888888774 455555
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hHHHHHHHHH
Q 004938 353 MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRN-------VISWTSMINA 425 (722)
Q Consensus 353 ~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~ 425 (722)
....+..+...|++++|...+....... +++...+ .++..+...++.++|.+.++...+.+ ...|..+...
T Consensus 147 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 224 (275)
T 1xnf_A 147 RSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY 224 (275)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence 5555555667788888888887777653 3333333 36667777778888888888776532 3567777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
|...|++++|+..|++.... .|+.. .....++...|++++|++.+
T Consensus 225 ~~~~g~~~~A~~~~~~al~~--~p~~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 225 YLSLGDLDSATALFKLAVAN--NVHNF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--CCTTC--HHHHHHHHHHHHHHHC----
T ss_pred HHHcCCHHHHHHHHHHHHhC--CchhH--HHHHHHHHHHHHHHhhHHHH
Confidence 77788888888888877763 45332 12233455666666665554
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=8.8e-12 Score=131.55 Aligned_cols=300 Identities=11% Similarity=-0.012 Sum_probs=176.8
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHH
Q 004938 218 EMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALD----AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSG 293 (722)
Q Consensus 218 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 293 (722)
...+......+...|+++.|...++.+++.+.. + ..++..+...|...|++++|...|++.
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------- 73 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD-------------- 73 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--------------
Confidence 334444555556666666666666666665322 2 245666677777777777777775443
Q ss_pred HHhcCCHHHHHHHHhccCCC--CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHccCC-
Q 004938 294 YSRAGQVEDARLIFDQMVEK--DLICWSAMISGYAENNHPQEALKLFNEMQVCGM-KPD----KVTMLSVISACAHLGV- 365 (722)
Q Consensus 294 ~~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~- 365 (722)
..+......+ ...+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|+
T Consensus 74 ----------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 143 (406)
T 3sf4_A 74 ----------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 143 (406)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCc
Confidence 2222222111 234566677777788888888887777654210 011 2244444555555555
Q ss_pred -------------------chHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHH
Q 004938 366 -------------------LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMIN 424 (722)
Q Consensus 366 -------------------~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 424 (722)
+++|...+....+ ++..... ....+|..+..
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~----------------------------~~~~~~~~~~~~~~~~~la~ 195 (406)
T 3sf4_A 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLS----------------------------LVTALGDRAAQGRAFGNLGN 195 (406)
T ss_dssp CC-------CCCCHHHHHHHHHHHHHHHHHHH----------------------------HHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHH----------------------------HHHhccCcHHHHHHHHHHHH
Confidence 4444444433322 1111111 01235566666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHH
Q 004938 425 AFAIHGDARNALIFFNKMKDES-IDPN----GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVD 495 (722)
Q Consensus 425 ~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~ 495 (722)
.|...|++++|+..|++..+.. -.++ ..++..+...+...|++++|..+++...+...-.++ ...+..+..
T Consensus 196 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 275 (406)
T 3sf4_A 196 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN 275 (406)
T ss_dssp HHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHH
Confidence 6667777777777776655420 0111 125666666777777777777777766542111111 345667777
Q ss_pred HHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------CCchHHHHHH
Q 004938 496 LFGRANLLREALELVETM----PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD------HDGALVLLSN 561 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~ 561 (722)
.|.+.|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+. ...++..++.
T Consensus 276 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 355 (406)
T 3sf4_A 276 TYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSD 355 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 888888888888887765 11122 457788888899999999999999999886432 3456778888
Q ss_pred HhhhCCCcc
Q 004938 562 IYAKDKRWQ 570 (722)
Q Consensus 562 ~~~~~g~~~ 570 (722)
+|...|+..
T Consensus 356 ~~~~~g~~~ 364 (406)
T 3sf4_A 356 LQMVLGLSY 364 (406)
T ss_dssp HHHHHHTTS
T ss_pred HHHHhhHhH
Confidence 888887664
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=7.2e-12 Score=116.28 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=126.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHH
Q 004938 415 NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCM 493 (722)
Q Consensus 415 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 493 (722)
+...|..+...|...|++++|++.|++.++. .|+ ..++..+..++.+.|++++|...+..... ..+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHH
Confidence 4566777777777888888888888877773 454 44677777777888888888888877766 334455666777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcch
Q 004938 494 VDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571 (722)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 571 (722)
...+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77778888888888888776 3334 467788888888888889999999999888888888888888888988999999
Q ss_pred HHHHHHHHHhC
Q 004938 572 VGELRKSMKER 582 (722)
Q Consensus 572 a~~~~~~m~~~ 582 (722)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 98888888764
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=8.8e-13 Score=142.23 Aligned_cols=193 Identities=10% Similarity=-0.008 Sum_probs=155.4
Q ss_pred CChhHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004938 383 GDLRVNNAIIDMYAKCGSL-ESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVL 458 (722)
Q Consensus 383 ~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 458 (722)
.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 3455566666666666666 777666666542 3466788888888888888888888888887 467777777888
Q ss_pred HHHHhc---------CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc--------CCHHHHHHHHHhC-CCCC---
Q 004938 459 YACSHA---------GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA--------NLLREALELVETM-PFAP--- 517 (722)
Q Consensus 459 ~a~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~p--- 517 (722)
..+... |++++|.+.|+++.+ ..+.+...|..+..+|... |++++|++.+++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 888888 888888888888887 3345577888888888888 8899999999887 4455
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 518 -NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 518 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
+...|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67899999999999999999999999999999999999999999999999999998765444
No 62
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.42 E-value=3.3e-12 Score=132.61 Aligned_cols=225 Identities=12% Similarity=0.059 Sum_probs=193.4
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CChHHHHHHHHHH
Q 004938 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS-LESAREVFERMRR---RNVISWTSMINAF 426 (722)
Q Consensus 351 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 426 (722)
..|..+..++...|++++|...+..+++.. +.+..+|+.+...|.+.|+ +++|...|++..+ .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456667778889999999999999999875 5568889999999999997 9999999998874 5778999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh-cCCHH
Q 004938 427 AIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR-ANLLR 504 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 504 (722)
...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..|+.+++ ..+.+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999984 565 56899999999999999999999999997 345567899999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCC--------
Q 004938 505 EA-----LELVETM-PFAP-NVVIWGSLMAACRVHG--EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK-------- 567 (722)
Q Consensus 505 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 567 (722)
+| ++.+++. .+.| +...|..+...+...| ++++|...++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777766 4556 5679999999998888 689999999998 999999999999999999875
Q ss_pred -CcchHHHHHHHH-Hh
Q 004938 568 -RWQDVGELRKSM-KE 581 (722)
Q Consensus 568 -~~~~a~~~~~~m-~~ 581 (722)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 55
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=4.1e-12 Score=129.96 Aligned_cols=262 Identities=11% Similarity=0.011 Sum_probs=176.5
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHccCCchHHHHHHHHHHHc----CCC-CChhHH
Q 004938 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPD-----KVTMLSVISACAHLGVLDQAQRIHLYIDKN----AFG-GDLRVN 388 (722)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~-~~~~~~ 388 (722)
......+...|++++|+..|+++.+.. |+ ...+..+...+...|++++|...+..+.+. +.. ....++
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 334455666667777777776666542 22 234555566666667777776666655432 111 124456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 004938 389 NAIIDMYAKCGSLESAREVFERMRR-----RN----VISWTSMINAFAIHGD--------------------ARNALIFF 439 (722)
Q Consensus 389 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 439 (722)
..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 6677777777777777777776542 22 2367777777777788 78888887
Q ss_pred HHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHH
Q 004938 440 NKMKDE----SIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELV 510 (722)
Q Consensus 440 ~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~ 510 (722)
++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776541 11121 235667777888888888888888887652211111 236778888888899999998888
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------CchHHHHHHHhhhCCCcchHHHHH
Q 004938 511 ETM----PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH------DGALVLLSNIYAKDKRWQDVGELR 576 (722)
Q Consensus 511 ~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~ 576 (722)
++. +..++ ..++..+...+...|++++|...++++++..|.. ...+..++.+|...|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 776 11122 4577788888999999999999999998875543 236778999999999999999999
Q ss_pred HHHHhC
Q 004938 577 KSMKER 582 (722)
Q Consensus 577 ~~m~~~ 582 (722)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 988764
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=1.2e-10 Score=117.91 Aligned_cols=218 Identities=11% Similarity=0.080 Sum_probs=158.7
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHH-------ccCCc-------hHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 004938 332 QEALKLFNEMQVCGMKPDKVTMLSVISACA-------HLGVL-------DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAK 397 (722)
Q Consensus 332 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 397 (722)
++|+..|++.+... +-+...|..+...+. ..|++ ++|..+++.+++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777887777642 234445555555544 34775 7888888888873224456678888888888
Q ss_pred cCCHHHHHHHHHhcCC--C-ChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 004938 398 CGSLESAREVFERMRR--R-NVI-SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACS-HAGLVDEGRE 472 (722)
Q Consensus 398 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 472 (722)
.|++++|.++|++..+ | +.. .|..++..+.+.|+.++|..+|++..+.. +++...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888765 3 333 78888888888889999999998888742 223344443333322 3688999999
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-P---FAP--NVVIWGSLMAACRVHGEIELAEFAAKQLL 546 (722)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 546 (722)
+|+.+.+. .+.+...|..+++.+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99888873 3446678888888888889999999888887 2 354 35688888888888899999999999999
Q ss_pred ccCCCCC
Q 004938 547 QLDPDHD 553 (722)
Q Consensus 547 ~~~p~~~ 553 (722)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8888765
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=1.6e-11 Score=113.85 Aligned_cols=167 Identities=13% Similarity=0.062 Sum_probs=140.3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 004938 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVL 458 (722)
Q Consensus 383 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 458 (722)
.+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|...|++++|+..+.+.... .|+ ...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 3567788888889999999999999988764 46778888999999999999999999998874 444 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 004938 459 YACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIE 536 (722)
Q Consensus 459 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 536 (722)
..+...++++.+...+....+ ..+.+...+..+...|.+.|++++|++.+++. ...| +..+|..+...+...|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 788899999999999998887 34556778889999999999999999999887 4445 5788999999999999999
Q ss_pred HHHHHHHHHHccCCCCC
Q 004938 537 LAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 537 ~a~~~~~~~~~~~p~~~ 553 (722)
+|+..++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999753
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=6.1e-12 Score=133.25 Aligned_cols=267 Identities=13% Similarity=0.027 Sum_probs=161.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcccC--C-c----hHHHHHHHHHHhcCCHHHHHHHHhccCCC---------Ccch
Q 004938 254 HLQSTLITMYANCGCMDMAKGLFDKVLLK--N-L----VVSTAMVSGYSRAGQVEDARLIFDQMVEK---------DLIC 317 (722)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~----~~~~~li~~~~~~g~~~~A~~~f~~~~~~---------~~~~ 317 (722)
..+..+...+...|++++|...|++.... + . ..|..+...|...|++++|...|++..+. ...+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455666777888888888887766432 1 1 23444555555555555555555443211 1223
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcC-CCCChhHHHHHHHHHH
Q 004938 318 WSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNA-FGGDLRVNNAIIDMYA 396 (722)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~~~ 396 (722)
|..+...|...|++++|+..|++..... .+.+ .+....++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443210 0000 0112334555556666
Q ss_pred hcCC-----------------HHHHHHHHHhcCC-----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC
Q 004938 397 KCGS-----------------LESAREVFERMRR-----R----NVISWTSMINAFAIHGDARNALIFFNKMKDESI-DP 449 (722)
Q Consensus 397 ~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p 449 (722)
..|+ +++|.+.+++..+ . ...+|..+...|...|++++|+..|++..+... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 6666 6666666555432 1 224677777788888888888888887765210 11
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CC---CC
Q 004938 450 N----GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELVETM-PF---AP 517 (722)
Q Consensus 450 ~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p 517 (722)
+ ..++..+...+...|++++|...++.+.....-..+ ...+..+...|.+.|++++|.+.+++. .. .+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 2 126777777888888888888888877653211111 456778888889999999999888876 11 11
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 518 N----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 518 ~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
+ ..++..+...+...|++++|...+++++++.+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 2 357788888999999999999999999987664
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=1.5e-11 Score=137.92 Aligned_cols=162 Identities=17% Similarity=0.201 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 494 (722)
..+|+.|...|.+.|++++|++.|++.++ +.|+ ...+..+..++.+.|++++|++.|+++.+. -+.+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 45778888888888888888888888887 4665 457888888888888888888888888762 334567888888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchH
Q 004938 495 DLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV 572 (722)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 572 (722)
.+|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888899999999888887 5556 4678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 004938 573 GELRKSMKE 581 (722)
Q Consensus 573 ~~~~~~m~~ 581 (722)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888754
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=1.1e-10 Score=119.13 Aligned_cols=274 Identities=11% Similarity=0.013 Sum_probs=154.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCH
Q 004938 225 LSACSRAGNLSYGEAVHEFIIDNNVALD----AHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQV 300 (722)
Q Consensus 225 l~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 300 (722)
...+...|+++.|...++.+++.... + ..++..+...|...|++++|...+++..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------- 70 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL-------------------- 70 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------
Confidence 34455566666666666666665322 2 3456666777777777777777754431
Q ss_pred HHHHHHHhccCCC--CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHccCC--------
Q 004938 301 EDARLIFDQMVEK--DLICWSAMISGYAENNHPQEALKLFNEMQVCGM-KPD----KVTMLSVISACAHLGV-------- 365 (722)
Q Consensus 301 ~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~-------- 365 (722)
++......+ ...++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+
T Consensus 71 ----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (338)
T 3ro2_A 71 ----TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 146 (338)
T ss_dssp ----HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC
T ss_pred ----HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhh
Confidence 112221111 234566677777778888888887777654210 011 2244445555555555
Q ss_pred ------------chHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCC
Q 004938 366 ------------LDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINAFAIHGD 431 (722)
Q Consensus 366 ------------~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~ 431 (722)
+++|...+....+ ++..... ....++..+...|...|+
T Consensus 147 ~~~~~~~~a~~~~~~A~~~~~~a~~----------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~ 198 (338)
T 3ro2_A 147 DTGEFPEDVRNALQAAVDLYEENLS----------------------------LVTALGDRAAQGRAFGNLGNTHYLLGN 198 (338)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHH----------------------------HHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH----------------------------HHHhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 4444444433322 1111111 012345555666666666
Q ss_pred HHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCC
Q 004938 432 ARNALIFFNKMKDESI-DPN----GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANL 502 (722)
Q Consensus 432 ~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~ 502 (722)
+++|+..+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ ...+..+...|...|+
T Consensus 199 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (338)
T 3ro2_A 199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 278 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC
Confidence 6666666666543100 011 125566666677777777777777766542111111 3456667777778888
Q ss_pred HHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 503 LREALELVETM----PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 503 ~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
+++|...+++. +..++ ..++..+...+...|++++|...+++++++.++
T Consensus 279 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 279 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 88888777765 11112 347778888899999999999999999987764
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.30 E-value=3.3e-09 Score=117.54 Aligned_cols=433 Identities=10% Similarity=0.037 Sum_probs=286.3
Q ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCC---CcccHHHHHHHHHhCCC---hhHHHHHHHH
Q 004938 135 EGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYR---DIVPWSVMIDGYFQNGL---FDEVLNLFEE 208 (722)
Q Consensus 135 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~---~~~A~~~~~~ 208 (722)
+....++..+... +-|...|..++..+.+.+.++.|+.+|+++... ...-|...+..-.+.|. ++.+.++|++
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3444556666655 568999999999999999999999999988753 33348888888888888 9999999999
Q ss_pred HHHCC-CCCCHhHHHHHHHHHHccCCh--------HHHHHHHHHHHH-cCC-CC-CHhHHHHHHHHHHh---------cC
Q 004938 209 MKMSN-VEPDEMVLSKILSACSRAGNL--------SYGEAVHEFIID-NNV-AL-DAHLQSTLITMYAN---------CG 267 (722)
Q Consensus 209 m~~~g-~~p~~~t~~~ll~~~~~~g~~--------~~a~~~~~~~~~-~g~-~~-~~~~~~~li~~~~~---------~g 267 (722)
..... ..|+...|..-+......++. +...++|+.++. .|. .+ +..+|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 98753 147887777777665555543 334577877765 465 44 35688888776543 34
Q ss_pred ChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh--CC
Q 004938 268 CMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQV--CG 345 (722)
Q Consensus 268 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g 345 (722)
+++.++++|++.+.-....+..+-..|.. |+.-. +..+-..++.- ...+++.|...+.++.. .+
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~----------fe~~~--~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~ 274 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQ----------WEQDV--NQLTARRHIGE--LSAQYMNARSLYQDWLNITKG 274 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHH----------HHHHH--CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHH----------HHHhc--CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHh
Confidence 57788899888865322112222222211 11100 11111111111 11233344444444321 11
Q ss_pred CC---------------C--C---h---hhHHHHHHHHHccC-C------chHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 004938 346 MK---------------P--D---K---VTMLSVISACAHLG-V------LDQAQRIHLYIDKNAFGGDLRVNNAIIDMY 395 (722)
Q Consensus 346 ~~---------------p--~---~---~t~~~ll~~~~~~g-~------~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 395 (722)
+. | + . ..|...+.---..+ . .+....+|++++.. ++....+|-..+..+
T Consensus 275 l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~ 353 (679)
T 4e6h_A 275 LKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQ 353 (679)
T ss_dssp CCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHH
T ss_pred HhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 10 1 0 0 11222222211111 1 22345678888775 455788888888888
Q ss_pred HhcCCHHHHH-HHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCC------------
Q 004938 396 AKCGSLESAR-EVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDES---------IDPN------------ 450 (722)
Q Consensus 396 ~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------ 450 (722)
...|+.++|. ++|++... .+...|-..+...-+.|+.++|.++|++++... -.|+
T Consensus 354 ~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 8999999996 99988764 456678888888999999999999999988631 0142
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 004938 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN-LLREALELVETM--PFAPNVVIWGSLMA 527 (722)
Q Consensus 451 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~ll~ 527 (722)
...|...+....+.|..+.|..+|..+.+. ........|...+.+-.+.| +.+.|.++|+.. .+..+...|...+.
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 235777778888889999999999999873 11223445554444445554 589999999887 33346778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCC---CCchHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 528 ACRVHGEIELAEFAAKQLLQLDPD---HDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 528 ~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
-....|+.+.|..+|+++++..|+ ....+...+..-.+.|+.+.+.++.+++.+.-.
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 888899999999999999998874 345667778878889999999999999987643
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=3.7e-11 Score=125.97 Aligned_cols=221 Identities=10% Similarity=0.026 Sum_probs=109.4
Q ss_pred HHccCCchHHHHHHHHHHHc--CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----hHHHHHHHH
Q 004938 360 CAHLGVLDQAQRIHLYIDKN--AFGG---DLRVNNAIIDMYAKCGSLESAREVFERMRR-----RN-----VISWTSMIN 424 (722)
Q Consensus 360 ~~~~g~~~~a~~i~~~~~~~--~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~ 424 (722)
+...|++++|...+..+.+. ..+. ...++..+...|...|++++|...+++..+ ++ ..+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34445555555555554432 0011 123444555555555555555555544331 11 234555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhhc---CC-CCCcchHHHHHH
Q 004938 425 AFAIHGDARNALIFFNKMKDESI-DPNG----VTFIGVLYACSHAGLVDEGREIFASMTNEY---NI-PPKYEHYGCMVD 495 (722)
Q Consensus 425 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~~~li~ 495 (722)
.|...|++++|+..|++..+..- .++. .++..+...+...|++++|.+.|+...+-. +. +.....+..+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 56666666666666655543100 0111 245555556666666666666665555410 11 112344555666
Q ss_pred HHHhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 496 LFGRANLLREALELVETM-PF-----APN-VVIWGSLMAACRVHGE---IELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
.|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ +++|...+++. ...|.....+..++.+|..
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 666666666666666554 10 111 1223444455555565 55555555554 2223333455566666777
Q ss_pred CCCcchHHHHHHHHHh
Q 004938 566 DKRWQDVGELRKSMKE 581 (722)
Q Consensus 566 ~g~~~~a~~~~~~m~~ 581 (722)
.|++++|.+.+++..+
T Consensus 352 ~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777766666643
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=2e-10 Score=116.38 Aligned_cols=212 Identities=10% Similarity=0.016 Sum_probs=173.2
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hcCCH-------HHHHHHHHhcCC---C-ChHHHHHHHHHHHH
Q 004938 367 DQAQRIHLYIDKNAFGGDLRVNNAIIDMYA-------KCGSL-------ESAREVFERMRR---R-NVISWTSMINAFAI 428 (722)
Q Consensus 367 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 428 (722)
+.|..+|+++++.. +.+..+|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888763 567778888887776 35886 899999998754 3 55689999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH-hcCCHHH
Q 004938 429 HGDARNALIFFNKMKDESIDPNGV--TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFG-RANLLRE 505 (722)
Q Consensus 429 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 505 (722)
.|++++|..+|++.++ +.|+.. .|..+...+.+.|++++|..+|+.+.+ ..+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 567643 788899999999999999999999987 33445555554444432 3799999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---CCC-CCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 506 ALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQL---DPD-HDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 506 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
|.++|++. ...| +...|..++..+...|++++|..+|+++++. .|+ ....+..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 3333 6789999999999999999999999999995 553 5567888899999999999999999999
Q ss_pred HhCC
Q 004938 580 KERG 583 (722)
Q Consensus 580 ~~~g 583 (722)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8754
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.27 E-value=2.9e-10 Score=119.18 Aligned_cols=230 Identities=8% Similarity=-0.003 Sum_probs=161.9
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCC------CChhHHH
Q 004938 321 MISGYAENNHPQEALKLFNEMQVC----GMKP-DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFG------GDLRVNN 389 (722)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~------~~~~~~~ 389 (722)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+..+.+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344555666666666666666542 1111 1234555666666677777777666666542111 1134567
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 004938 390 AIIDMYAKCGSLESAREVFERMRR-----RN----VISWTSMINAFAIHGDARNALIFFNKMKDE----SIDPN-GVTFI 455 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 455 (722)
.+...|...|++++|.+.|++..+ ++ ..+|..+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888888888888877653 22 247888889999999999999999988762 23244 45688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhc---CCCCCcchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 004938 456 GVLYACSHAGLVDEGREIFASMTNEY---NIPPKYEHYGCMVDLFGRANL---LREALELVETMPFAPNV-VIWGSLMAA 528 (722)
Q Consensus 456 ~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~ 528 (722)
.+...+...|++++|...++...+.. +.+.....+..+...|...|+ +++|+.++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 88889999999999999999877532 112223345678888999999 99999999998655543 577788889
Q ss_pred HHHcCCHHHHHHHHHHHHccCC
Q 004938 529 CRVHGEIELAEFAAKQLLQLDP 550 (722)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~p 550 (722)
+...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987643
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=6.2e-12 Score=127.34 Aligned_cols=165 Identities=11% Similarity=0.065 Sum_probs=109.8
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHc------CC
Q 004938 315 LICWSAMISGYAENNHPQEALKLFNEMQVC-------GMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKN------AF 381 (722)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~------~~ 381 (722)
..+|..+...+...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+++. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456888888899999999999999888763 12223456667777788888888888888877653 11
Q ss_pred -CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 004938 382 -GGDLRVNNAIIDMYAKCGSLESAREVFERMRR-----------RNVISWTSMINAFAIHGDARNALIFFNKMKDE---- 445 (722)
Q Consensus 382 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 445 (722)
+....++..+...|...|++++|.+.|++..+ .....|..+...|...|++++|++.|+++...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22345566777777777777777777766542 12245666666777777777777777776553
Q ss_pred --CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 004938 446 --SIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 446 --g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
+..|+. .++..+...+...|++++|..+++.+.+
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112222 3456666666777777777777776664
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=1.5e-10 Score=106.82 Aligned_cols=159 Identities=15% Similarity=0.044 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004938 387 VNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463 (722)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 463 (722)
.+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+. .
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~--------------- 72 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--A--------------- 72 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C---------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C---------------
Confidence 344445555555555555555555543 23344555555555555555555555555442 2
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF-APNVVIWGSLMAACRVHGEIELAEFA 541 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~ 541 (722)
+.+...+..++..|...|++++|.+.++++ .. +.+...|..+...+...|++++|...
T Consensus 73 --------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 73 --------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 223334444444455555555555555444 11 22455666666667777777777777
Q ss_pred HHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 542 AKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 542 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
++++++..|+++..+..++.+|...|++++|.+.++...+.
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777677777777777777777777777766543
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=1.2e-11 Score=125.16 Aligned_cols=246 Identities=14% Similarity=0.092 Sum_probs=160.3
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhccCC--------C---CcchHHHHHHHHHhcCCchHHHHHHHHHHhC------CC
Q 004938 284 LVVSTAMVSGYSRAGQVEDARLIFDQMVE--------K---DLICWSAMISGYAENNHPQEALKLFNEMQVC------GM 346 (722)
Q Consensus 284 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 346 (722)
..++..+...|...|++++|...|+++.+ . ...++..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45788888999999999999999988754 2 2456888889999999999999999998764 21
Q ss_pred CC-ChhhHHHHHHHHHccCCchHHHHHHHHHHHc------CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----
Q 004938 347 KP-DKVTMLSVISACAHLGVLDQAQRIHLYIDKN------AF-GGDLRVNNAIIDMYAKCGSLESAREVFERMRRR---- 414 (722)
Q Consensus 347 ~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 414 (722)
.| ...++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|.+.|++..+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22 3556778888889999999999999988764 22 223556788889999999999999998876431
Q ss_pred -------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc
Q 004938 415 -------NVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY 487 (722)
Q Consensus 415 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 487 (722)
...+|..+...|...|++++|+..|+++.+. .|+. .+..+- ......... .
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~-~~~~~~---~~~~~~~~~----------------~ 244 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR--AHER-EFGSVD---DENKPIWMH----------------A 244 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHH-HHC---------CCHHHH----------------H
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHh-cCCCCC---cchHHHHHH----------------H
Confidence 2357888889999999999999999998773 1110 000000 000000000 0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 488 EHYGCMVDLFGRANLLREALELVETMP-FAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
..+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 011112222333444445555555542 233 3456777888888888888888888888877664
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.24 E-value=3.8e-09 Score=110.03 Aligned_cols=262 Identities=13% Similarity=0.008 Sum_probs=171.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCCCChh----hHHHHHHHHHccCCchHHHHHHHHHHHcCCC-CC----hhHHHHH
Q 004938 321 MISGYAENNHPQEALKLFNEMQVCGMKPDKV----TMLSVISACAHLGVLDQAQRIHLYIDKNAFG-GD----LRVNNAI 391 (722)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~-~~----~~~~~~l 391 (722)
....+...|++++|...+++.....-..+.. .+..+...+...|++++|...+....+.... .+ ...+..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445566777777777777766543111211 3444455666777787777777766542111 11 1234566
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C--CHHHHHH
Q 004938 392 IDMYAKCGSLESAREVFERMRR-------R----NVISWTSMINAFAIHGDARNALIFFNKMKDESID--P--NGVTFIG 456 (722)
Q Consensus 392 i~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ 456 (722)
...+...|++++|...+++..+ + ....+..+...+...|++++|...+++.....-. | ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 7777888888888888776542 1 1235566777788889999999888887763211 1 1245667
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHH
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG-----CMVDLFGRANLLREALELVETM-PFAPN-----VVIWGSL 525 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l 525 (722)
+...+...|++++|...++..............+. .++..+...|++++|...+++. ...|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77788888999999999888765322111111222 2334477889999999999887 22221 3356677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCC------CchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 526 MAACRVHGEIELAEFAAKQLLQLDPDH------DGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 526 l~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...+...|++++|...++++++..+.. ...+..++.+|...|+.++|...++...+.
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 788888999999999999888754322 136667888899999999999988887653
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=4.5e-10 Score=108.10 Aligned_cols=205 Identities=12% Similarity=0.046 Sum_probs=147.9
Q ss_pred CChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHH
Q 004938 348 PDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMIN 424 (722)
Q Consensus 348 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 424 (722)
.|...+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 355677777788888899999999999888876436667777788888889999999888887754 34567888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC---cchHHHH
Q 004938 425 AFAIHGDARNALIFFNKMKDESIDPNG--------VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK---YEHYGCM 493 (722)
Q Consensus 425 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 493 (722)
.|...|++++|+..|++..+. .|+. ..|..+...+...|++++|.+.|+.+.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 888889999999999888874 4543 3466667777888888888888888875 2343 5667777
Q ss_pred HHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 494 VDLFGRANLL--REALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 494 i~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
...|...|+. ++|..+ . ..+...+..+. ....+.+++|...++++++++|+++.....+..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 7777665543 222221 1 12333333332 334566899999999999999999877777766543
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=2.1e-09 Score=112.26 Aligned_cols=227 Identities=15% Similarity=0.089 Sum_probs=133.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHccCCchHHHHHHHHHHHcC--CC----CChhHHH
Q 004938 321 MISGYAENNHPQEALKLFNEMQVCGM-KPD----KVTMLSVISACAHLGVLDQAQRIHLYIDKNA--FG----GDLRVNN 389 (722)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~--~~----~~~~~~~ 389 (722)
....+...|++++|+..|++..+.-. .+| ..++..+..++...|+++.|...+..+.+.. .. ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677777777777777654311 122 2345556666677777777777776665421 11 1134556
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHH
Q 004938 390 AIIDMYAKCGSLESAREVFERMRR-----RN----VISWTSMINAFAIHGDARNALIFFNKMKDE----SIDPNGVTFIG 456 (722)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ 456 (722)
.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..|++.... +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 666777777777777777665542 11 235666777777777777777777776651 11112345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEYNIPPK---YEHYGCMVDLFGRANL---LREALELVETMPFAPNV-VIWGSLMAAC 529 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~~ 529 (722)
+...+.+.|++++|..+++...+...-.++ ...+..+...|...|+ +++|+..+++.+..|+. ..+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 667777777777777777776653222112 2234445555556666 66677766665433332 3445555666
Q ss_pred HHcCCHHHHHHHHHHHHc
Q 004938 530 RVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~ 547 (722)
...|++++|...++++++
T Consensus 347 ~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666666666666666654
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=7.1e-10 Score=102.29 Aligned_cols=168 Identities=18% Similarity=0.058 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHH
Q 004938 351 VTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFA 427 (722)
Q Consensus 351 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 427 (722)
..+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.++++.+ .+...|..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456677788899999999999999887753 45678889999999999999999999998763 46778888888899
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 004938 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507 (722)
Q Consensus 428 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 507 (722)
..|++++|.+.|+++.... +.+...+..+...+...|++++|..+++.+.+. .
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~------------------------ 140 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--R------------------------ 140 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C------------------------
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--C------------------------
Confidence 9999999999998887742 234455666666666777777777776666542 1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 508 ELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 508 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
+.+...|..+...+...|++++|...++++++..|+++.
T Consensus 141 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 141 --------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred --------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 123556677777777888888888888888887777653
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=4.6e-10 Score=108.00 Aligned_cols=187 Identities=10% Similarity=-0.045 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLY 459 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 459 (722)
+..+......|.+.|++++|...|++..+ ++...|..+...+...|++++|+..|++..+ ..|+. ..+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 34455555555556666666655554432 3444444455555555666666666555555 23432 34555555
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCc-------chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKY-------EHYGCMVDLFGRANLLREALELVETM-PFAPN---VVIWGSLMAA 528 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~ 528 (722)
++...|++++|...|+...+. .+.+. ..|..+...+.+.|++++|++.+++. ...|+ ...|..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 555555555555555555542 12222 23444445555555555555555544 33443 2344444444
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+.. .+...++++..+.+.+...+.. ......+.+++|...+++..+.
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 422 2333344444444443322221 1223334457788777777664
No 81
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.16 E-value=6e-10 Score=120.01 Aligned_cols=208 Identities=12% Similarity=-0.008 Sum_probs=138.9
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCc-hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 004938 331 PQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVL-DQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFE 409 (722)
Q Consensus 331 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 409 (722)
+++++..+++..... +.+...+..+..++...|++ ++|...++.+++.. +.+...+..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555544331 23455566666666677777 77777777766653 3346667777777777777777777777
Q ss_pred hcCC--CChHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc--------CCHHH
Q 004938 410 RMRR--RNVISWTSMINAFAIH---------GDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHA--------GLVDE 469 (722)
Q Consensus 410 ~~~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~--------g~~~~ 469 (722)
+..+ |+...|..+...|... |++++|+..|++..+. .|+ ...+..+..++... |++++
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 6653 5556677777777777 7777888887777773 444 45667777777777 77888
Q ss_pred HHHHHHHhHhhcCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004938 470 GREIFASMTNEYNIP---PKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQ 544 (722)
Q Consensus 470 a~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 544 (722)
|...|+.+.+. .+ .+...|..+..+|.+.|++++|++.+++. ...| +...|..+...+...|++++|...+++
T Consensus 240 A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888777762 22 35667777778888888888888887776 3344 355677777777777777777665443
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=4.3e-08 Score=101.99 Aligned_cols=266 Identities=11% Similarity=-0.012 Sum_probs=155.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HhHHHHHH
Q 004938 190 IDGYFQNGLFDEVLNLFEEMKMSNVEPDEM----VLSKILSACSRAGNLSYGEAVHEFIIDNNVA-LD----AHLQSTLI 260 (722)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~li 260 (722)
...+...|++++|...+++.....-..+.. ++..+...+...|+++.|...+...++.... .+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556777777777777766543222221 3444445566677777777777766543111 11 12345566
Q ss_pred HHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCchHHHH
Q 004938 261 TMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK----DLICWSAMISGYAENNHPQEALK 336 (722)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~ 336 (722)
..|...|++++|...+++. .++..+...+ ....+..+...+...|++++|..
T Consensus 101 ~~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 156 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6777777777777775433 2333332222 12345667777888888888888
Q ss_pred HHHHHHhCCCC--C--ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCCh-hHHH-----HHHHHHHhcCCHHHHHH
Q 004938 337 LFNEMQVCGMK--P--DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDL-RVNN-----AIIDMYAKCGSLESARE 406 (722)
Q Consensus 337 ~~~~m~~~g~~--p--~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~ 406 (722)
.+++....... + ...++..+...+...|++++|...++...+....++. ..+. ..+..+...|++++|..
T Consensus 157 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 236 (373)
T 1hz4_A 157 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN 236 (373)
T ss_dssp HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 88887653211 1 1234566666777888888888888877654211111 1111 23344667888888888
Q ss_pred HHHhcCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 004938 407 VFERMRRRN-------VISWTSMINAFAIHGDARNALIFFNKMKDE----SIDPNGV-TFIGVLYACSHAGLVDEGREIF 474 (722)
Q Consensus 407 ~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 474 (722)
.+++...++ ...+..+...+...|++++|...+++.... |..++.. .+..+..++...|+.++|...+
T Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 237 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp HHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 888776522 124556667777788888888888776542 1111221 3444455666667777777666
Q ss_pred HHhHh
Q 004938 475 ASMTN 479 (722)
Q Consensus 475 ~~~~~ 479 (722)
+....
T Consensus 317 ~~al~ 321 (373)
T 1hz4_A 317 LDALK 321 (373)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.11 E-value=1.5e-09 Score=113.42 Aligned_cols=308 Identities=9% Similarity=-0.013 Sum_probs=206.2
Q ss_pred CCCCHhHHHHHHHHH--HhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCC-CcchHHHHHHH-
Q 004938 249 VALDAHLQSTLITMY--ANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEK-DLICWSAMISG- 324 (722)
Q Consensus 249 ~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~- 324 (722)
..|+..+-+.|-+.| .+.+++++|..+++++. +.++.|.+. ++..|-.++..
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~------------------------~~~~~~~~~~~~~~yy~l~~~r 61 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVE------------------------QDIQQMEEDQDLLIYYSLMCFR 61 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHGGGBCCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH------------------------HHHHHhcccHHHHHHHHHHHHH
Confidence 356667777777777 77888888888865542 223333221 22333333321
Q ss_pred -HHhcCCchHHH---------HHHHHHHhCCCCCCh-h---hHHHHHHHHHccCCchHHHHHHHHHHHcCC-CC----Ch
Q 004938 325 -YAENNHPQEAL---------KLFNEMQVCGMKPDK-V---TMLSVISACAHLGVLDQAQRIHLYIDKNAF-GG----DL 385 (722)
Q Consensus 325 -~~~~g~~~~A~---------~~~~~m~~~g~~p~~-~---t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~-~~----~~ 385 (722)
..-.+....+. +.++.+.....+.+. . .+......+...|++++|...+..+.+... .+ ..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a 141 (378)
T 3q15_A 62 HQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKA 141 (378)
T ss_dssp HHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHH
T ss_pred HHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHH
Confidence 11112222222 555554332111111 1 122233456789999999999999876421 12 24
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-
Q 004938 386 RVNNAIIDMYAKCGSLESAREVFERMRR-----RN-----VISWTSMINAFAIHGDARNALIFFNKMKDE----SIDPN- 450 (722)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~- 450 (722)
.++..+...|...|+++.|...+++..+ ++ ..+++.+...|...|++++|++.|++..+. +..+.
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5778899999999999999998887642 22 357888999999999999999999987762 11111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc---CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HH
Q 004938 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEY---NIPPKYEHYGCMVDLFGRANLLREALELVETM----PF--APN-VV 520 (722)
Q Consensus 451 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~ 520 (722)
..++..+...+...|++++|.+.|+...+-. +.+.....+..+...|.+.|++++|.+.+++. +. .|. ..
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 2467788889999999999999999887611 22333567888999999999999999999886 21 233 33
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 521 IWGSLMAACRVHGE---IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 521 ~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
.+..+...+...++ +++|...+++. ...|.....+..++.+|...|++++|.+.+++..+
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45556666777788 77787777762 23344445777899999999999999999998764
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=9.4e-10 Score=110.34 Aligned_cols=186 Identities=10% Similarity=0.005 Sum_probs=117.4
Q ss_pred HHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHH
Q 004938 394 MYAKCGSLESAREVFERMRR-----RN----VISWTSMINAFAIHGDARNALIFFNKMKDESI---DPN--GVTFIGVLY 459 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~ 459 (722)
.|...|++++|.+.|++..+ .+ ..+|+.+...|...|++++|+..|++...... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555666666655554432 11 34666777777777777777777776654210 111 235677777
Q ss_pred HHHhc-CCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---H-----HHHHHH
Q 004938 460 ACSHA-GLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELVETM-PFAPN---V-----VIWGSL 525 (722)
Q Consensus 460 a~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~l 525 (722)
.+... |++++|+..|++..+.+.-..+ ...+..+...|.+.|++++|++.+++. ...|+ . ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 78875 8888888888887753211111 245777888888899999999888876 22222 1 256777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCCch-----HHHHHHHhh--hCCCcchHHHHHHHH
Q 004938 526 MAACRVHGEIELAEFAAKQLLQLDPDHDGA-----LVLLSNIYA--KDKRWQDVGELRKSM 579 (722)
Q Consensus 526 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m 579 (722)
...+...|++++|...++++++++|+.... +..++..|. ..+++++|.+.++.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 778888999999999999999999986543 334555554 456777777776544
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.06 E-value=6.1e-10 Score=124.93 Aligned_cols=164 Identities=12% Similarity=0.176 Sum_probs=133.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLY 459 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 459 (722)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++.++ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 456777888888888888888888887653 4567888888888888999999999988887 4666 457888888
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN-VVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 537 (722)
++...|++++|++.|+++.+ --+.+...|..+..+|.+.|++++|++.+++. .+.|+ ...|..|...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88899999999999988886 23445678888999999999999999999887 55564 6788889999999999999
Q ss_pred HHHHHHHHHccCCC
Q 004938 538 AEFAAKQLLQLDPD 551 (722)
Q Consensus 538 a~~~~~~~~~~~p~ 551 (722)
|.+.+++++++.|+
T Consensus 164 A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 164 YDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh
Confidence 99999998876543
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=2.8e-09 Score=106.90 Aligned_cols=167 Identities=11% Similarity=-0.026 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCC------
Q 004938 387 VNNAIIDMYAKCGSLESAREVFERMRR-----RN----VISWTSMINAFAIH-GDARNALIFFNKMKDESIDPN------ 450 (722)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~------ 450 (722)
+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 444555555555555555555554432 11 24677777888885 8888888888887662 221
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcc-----hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----
Q 004938 451 -GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE-----HYGCMVDLFGRANLLREALELVETM-PFAPNV---- 519 (722)
Q Consensus 451 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~---- 519 (722)
..++..+...+...|++++|...|+.+.+...-.+... .|..+..++...|++++|...+++. .+.|+.
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 24577788888888999999999888886321112211 4567778888889999999999887 445542
Q ss_pred --HHHHHHHHHHH--HcCCHHHHHHHHHHHHccCCCCCch
Q 004938 520 --VIWGSLMAACR--VHGEIELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 520 --~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~ 555 (722)
..+..++.++. ..+++++|...|+++..++|.....
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 13444555554 3567888888888888888865433
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=2.2e-09 Score=106.48 Aligned_cols=221 Identities=10% Similarity=0.099 Sum_probs=154.3
Q ss_pred HccCCchHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChHHHHHH
Q 004938 361 AHLGVLDQAQRIHLYIDKN-------AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-----------RNVISWTSM 422 (722)
Q Consensus 361 ~~~g~~~~a~~i~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 422 (722)
...|++++|...+++.++. ..+....++..+...|...|++++|...|++..+ ....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4568888888888877652 2233466788899999999999999999987652 124578888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc-----C-CCCCcch
Q 004938 423 INAFAIHGDARNALIFFNKMKDE------SIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEY-----N-IPPKYEH 489 (722)
Q Consensus 423 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~ 489 (722)
...|...|++++|+..|++.... .-.|+ ..++..+...+...|++++|..+++.+.+.. . .+.....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998763 11233 3567888889999999999999999887631 1 1223467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-C---------CCCC-HHHHHHHHHHHHHcC------CHHHHHHHHHHHHccCCCC
Q 004938 490 YGCMVDLFGRANLLREALELVETM-P---------FAPN-VVIWGSLMAACRVHG------EIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p~-~~~~~~ll~~~~~~g------~~~~a~~~~~~~~~~~p~~ 552 (722)
+..+...|.+.|++++|.+.+++. . ..+. ...|..+.......+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 788889999999999999998876 1 1222 234444433333322 2333344444333344556
Q ss_pred CchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 553 DGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
...+..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66888999999999999999999998765
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=7.8e-09 Score=101.69 Aligned_cols=183 Identities=14% Similarity=0.018 Sum_probs=115.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR--R-N---VISWTSMINAFAIHGDARNALIFFNKMKDESIDPN----GVTF 454 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~ 454 (722)
...+..+...+.+.|++++|...|+++.+ | + ...|..+...|.+.|++++|+..|++.++. .|+ ...+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHHH
Confidence 34444455556666666666666666543 2 2 345556666666666666666666666653 221 2244
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHhHhhcCCCCCcchH-----------------HHHHHHHHhcCCHHHHHHH
Q 004938 455 IGVLYACSH--------AGLVDEGREIFASMTNEYNIPPKYEHY-----------------GCMVDLFGRANLLREALEL 509 (722)
Q Consensus 455 ~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~A~~~ 509 (722)
..+..++.. .|++++|...|+.+.+.+ |.+.... ..+...|.+.|++++|+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 455555555 666677777766666532 2222233 5567888999999999999
Q ss_pred HHhC-CCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHccCCCCCch---HHHHHHHhhhCCCcch
Q 004938 510 VETM-PFAPN----VVIWGSLMAACRVH----------GEIELAEFAAKQLLQLDPDHDGA---LVLLSNIYAKDKRWQD 571 (722)
Q Consensus 510 ~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~ 571 (722)
++++ ...|+ ...+..+..++... |++++|...++++++..|+++.. ...+..++...|++++
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 9887 22333 35677777777765 88999999999999999998643 3345555544444433
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=2.5e-08 Score=98.01 Aligned_cols=191 Identities=14% Similarity=0.042 Sum_probs=149.9
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC-c
Q 004938 413 RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN----GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK-Y 487 (722)
Q Consensus 413 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~ 487 (722)
..+...+-.+...+.+.|++++|+..|+++++. .|+ ...+..+..++...|++++|...|+.+.+.+.-.|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 356677788888899999999999999999884 454 457888889999999999999999999985332222 4
Q ss_pred chHHHHHHHHHh--------cCCHHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHHcCCHHHHHH
Q 004938 488 EHYGCMVDLFGR--------ANLLREALELVETM-PFAPN-VVIW-----------------GSLMAACRVHGEIELAEF 540 (722)
Q Consensus 488 ~~~~~li~~~~~--------~g~~~~A~~~~~~~-~~~p~-~~~~-----------------~~ll~~~~~~g~~~~a~~ 540 (722)
..+..+..++.+ .|++++|+..|++. ...|+ ...+ ..+...+...|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 567788888988 99999999999987 23333 2222 456778899999999999
Q ss_pred HHHHHHccCCCCC---chHHHHHHHhhhC----------CCcchHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCC
Q 004938 541 AAKQLLQLDPDHD---GALVLLSNIYAKD----------KRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADR 607 (722)
Q Consensus 541 ~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~ 607 (722)
.++++++..|+++ ..+..++.+|... |++++|...++++.+...
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p----------------------- 226 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP----------------------- 226 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----------------------
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----------------------
Confidence 9999999999854 4788999999877 999999999999887432
Q ss_pred CCcchHHHHHHHHHHHHHHhh
Q 004938 608 SHKQTDQIYEKLNEVISELKP 628 (722)
Q Consensus 608 ~~~~~~~i~~~l~~l~~~~~~ 628 (722)
.+|...+....+.++...+.+
T Consensus 227 ~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp TCTHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 244455666666666666553
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.97 E-value=1.4e-08 Score=100.63 Aligned_cols=199 Identities=12% Similarity=0.052 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHccCCchHHHHHHHHHHHc------CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C--
Q 004938 351 VTMLSVISACAHLGVLDQAQRIHLYIDKN------AF-GGDLRVNNAIIDMYAKCGSLESAREVFERMRR-------R-- 414 (722)
Q Consensus 351 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-- 414 (722)
.++..+...+...|++++|...+..+++. +. +....++..+...|...|++++|.+.|++..+ +
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444445555555555555555554432 11 11234555666666666666666666665432 1
Q ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc----
Q 004938 415 --NVISWTSMINAFAIHGDARNALIFFNKMKDE------SIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEY---- 481 (722)
Q Consensus 415 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---- 481 (722)
...+|..+...|...|++++|+..|++..+. +-.|+ ..++..+...+...|++++|..+++.+.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2346777777788888888888888877663 11332 3467777888888888888888888877521
Q ss_pred --CCCC-CcchHHHHHHHHHh------cCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004938 482 --NIPP-KYEHYGCMVDLFGR------ANLLREALELVETMP-FAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLD 549 (722)
Q Consensus 482 --~~~~-~~~~~~~li~~~~~------~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 549 (722)
...+ ....+..+...+.. ...+.++...++... ..|+ ..+|..+...+...|++++|...++++++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1122 23344444444333 233555666666653 2333 4578889999999999999999999998753
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=7.8e-10 Score=98.51 Aligned_cols=139 Identities=8% Similarity=-0.049 Sum_probs=94.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHH
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLR 504 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 504 (722)
+...|+.++|+..+++... ..|+. ..+..+...|.+.|++++|++.|+...+ -.|.+...|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchH
Confidence 3445566666666665543 23332 2445566666666777777777766665 23344566777777777777777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHHHHccCCCCCchHHHHHHHhhhCCC
Q 004938 505 EALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEF-AAKQLLQLDPDHDGALVLLSNIYAKDKR 568 (722)
Q Consensus 505 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 568 (722)
+|+..|++. .+.| +..+|..+...+...|+.++|.. .++++++++|+++.+|.....++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777766 4455 46788888888888888876655 4689999999999888888888877775
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.91 E-value=1.6e-08 Score=87.29 Aligned_cols=129 Identities=22% Similarity=0.285 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 497 (722)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~------------ 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPR------------ 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCC------------
Confidence 45556666666666666666666666532 223444555555555666666666666655542 122
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHH
Q 004938 498 GRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
+...|..+...+...|++++|...++++++..|++...+..++.+|...|++++|.+.++
T Consensus 68 --------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 68 --------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp --------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 334455555555555666666666666666666555555566666666666666666665
Q ss_pred HHHh
Q 004938 578 SMKE 581 (722)
Q Consensus 578 ~m~~ 581 (722)
.+.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5544
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=4.5e-09 Score=118.45 Aligned_cols=168 Identities=11% Similarity=-0.026 Sum_probs=124.7
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 004938 396 AKCGSLESAREVFERMR-----------RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSH 463 (722)
Q Consensus 396 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 463 (722)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 56777788877777765 235567777777888888888888888887773 454 4567777777888
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFA 541 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 541 (722)
.|++++|.+.|+++.+ ..+.+...|..+..+|.+.|++++ ++.+++. ...| +...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888776 234456777888888888888888 8777776 3444 456788888888888888888888
Q ss_pred HHHHHccCCCCCchHHHHHHHhhhCCC
Q 004938 542 AKQLLQLDPDHDGALVLLSNIYAKDKR 568 (722)
Q Consensus 542 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 568 (722)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888888888888888876555
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.91 E-value=3.3e-08 Score=85.35 Aligned_cols=92 Identities=20% Similarity=0.295 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004938 387 VNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH 463 (722)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 463 (722)
.+..+...|...|++++|..+|+++.+ .+...|..+...+...|++++|...|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 567888999999999999999998753 567889999999999999999999999998853 3345677777888888
Q ss_pred cCCHHHHHHHHHHhHh
Q 004938 464 AGLVDEGREIFASMTN 479 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~ 479 (722)
.|++++|.++++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALE 97 (136)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 8888888888888776
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=3.9e-08 Score=94.20 Aligned_cols=182 Identities=14% Similarity=0.053 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR--RN----VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV----TF 454 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 454 (722)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455566778888888888888888763 32 246777788888888888888888888874 44432 34
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 004938 455 IGVLYACSH------------------AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFA 516 (722)
Q Consensus 455 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 516 (722)
..+..++.. .|+.++|...|+.+.+. .|.+...+..+..+ +.+.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----HHHHHHH---------
Confidence 444444443 35666666666666652 22222222211110 0000000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC---chHHHHHHHhhhCCCcchHHHHHHHHHhCCCc
Q 004938 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD---GALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585 (722)
Q Consensus 517 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 585 (722)
......+...+...|++++|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01113456678899999999999999999999976 56889999999999999999999999886543
No 96
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.90 E-value=1.1e-06 Score=94.51 Aligned_cols=370 Identities=10% Similarity=-0.011 Sum_probs=179.7
Q ss_pred cC-ChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhCCC-hhHHHHH
Q 004938 130 AE-GLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSY--RDIVPWSVMIDGYFQNGL-FDEVLNL 205 (722)
Q Consensus 130 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~-~~~A~~~ 205 (722)
.| ++..|+.+++.++..- |. |+.+.+..+|++... |++..|...+....+.+. .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 34 3677777777766542 11 788889988887654 566677777776666553 3455667
Q ss_pred HHHHHHC-CCCC-CHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhc
Q 004938 206 FEEMKMS-NVEP-DEMVLSKILSACSR----AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKV 279 (722)
Q Consensus 206 ~~~m~~~-g~~p-~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 279 (722)
|+..... |..| +...|...+..+.. .++.+.+..+++.+++.....-..+|......-.. .....+.++..+.
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHH
Confidence 7766542 4333 44556555554432 35677788888888774221112222222221111 1122222222111
Q ss_pred ccCCchHHHHHHHHHHhcCCHHHHHHHHhccC----CCCcchHHHHHHHHHhcCC-------chHHHHHHHHHHhCCCCC
Q 004938 280 LLKNLVVSTAMVSGYSRAGQVEDARLIFDQMV----EKDLICWSAMISGYAENNH-------PQEALKLFNEMQVCGMKP 348 (722)
Q Consensus 280 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p 348 (722)
. +.+..|..+++.+. ..+...|...+.--..++. .+.+..+|++++... +-
T Consensus 150 ~-----------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~ 211 (493)
T 2uy1_A 150 L-----------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YY 211 (493)
T ss_dssp H-----------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred h-----------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CC
Confidence 0 11222222222211 1123355555544322211 234567788777642 33
Q ss_pred ChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH-HHHHHhcC------------CCC
Q 004938 349 DKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESA-REVFERMR------------RRN 415 (722)
Q Consensus 349 ~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~------------~~~ 415 (722)
+...|...+.-+.+.|+++.|..+++.+++. +.+...+.. |+...+.++. ..+.+... ...
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKEL 285 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhccccc
Confidence 4556666666677788888888888888877 444333332 2221111111 11111110 001
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSH-AGLVDEGREIFASMTNEYNIPPKYEHYGCMV 494 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 494 (722)
...|-..+..+.+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.+ +.+...+...+
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yi 361 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 234555555555556666666666666 21 11122233221111111 224666666666666533 22233444555
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 495 DLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLL 546 (722)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 546 (722)
+...+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++.+
T Consensus 362 d~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55556666666666666652 234555555555555555555555555544
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.90 E-value=1.3e-07 Score=93.11 Aligned_cols=174 Identities=15% Similarity=0.019 Sum_probs=92.3
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 004938 404 AREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 404 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
|...|++..+ ++..++..+...+...|++++|++++.+.+..|-.++ ...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444554432 3333444555555566666666666665544332122 23455555566666666666666666644
Q ss_pred hcCCCC-----CcchHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-
Q 004938 480 EYNIPP-----KYEHYGCMVDL--FGRAN--LLREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQL- 548 (722)
Q Consensus 480 ~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 548 (722)
..| +..+...|..+ ....| ++++|..+|+++ ...|+..+-..|++++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 233 12333333333 22223 666666666666 33344222233334566677777777777766654
Q ss_pred ---------CCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 549 ---------DPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 549 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+|+++.++.+++.+....|+ +|.+++.++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 36666666666666666665 666777766664
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.87 E-value=1.5e-07 Score=92.52 Aligned_cols=237 Identities=10% Similarity=0.005 Sum_probs=153.3
Q ss_pred hcCCHHHHHHHHhccCCCCcc-hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHH
Q 004938 296 RAGQVEDARLIFDQMVEKDLI-CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHL 374 (722)
Q Consensus 296 ~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~ 374 (722)
-.|++..++.-...+...+.. .---+..+|...|++.... .-.|....+..+. .|...+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la-~~~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYV-QFLDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHH-HHHTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHH-HHhccc----HHHHHH
Confidence 345555555544544333222 2223446777777766421 1123322333222 223322 556666
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 004938 375 YIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR-----RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDP 449 (722)
Q Consensus 375 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 449 (722)
..++.+ .++......+...|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+ ..|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCc
Confidence 665554 34455556788888889999999999988743 2456777788889999999999999999987 467
Q ss_pred -----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC----
Q 004938 450 -----NGVTFIGVLYAC--SHAG--LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF---- 515 (722)
Q Consensus 450 -----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---- 515 (722)
+..+...+..++ ...| ++.+|..+|+++..+ .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 355666666553 3334 899999999998763 244223344455888999999999998765 21
Q ss_pred ------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 516 ------AP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 516 ------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
.| |+.+...++......|+ .|.++++++.+..|+++.
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 24 45666566666666776 889999999999999874
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.83 E-value=5.6e-08 Score=96.97 Aligned_cols=173 Identities=9% Similarity=-0.009 Sum_probs=132.2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 004938 403 SAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEY 481 (722)
Q Consensus 403 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 481 (722)
...+.+......+...+..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|...++.+...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 3444444444445566777777788888888998888888874 565 456777888888889999999988887652
Q ss_pred CCCCCcchHH-HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--CchH
Q 004938 482 NIPPKYEHYG-CMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH--DGAL 556 (722)
Q Consensus 482 ~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~ 556 (722)
.|+..... .....+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ...+
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 34433222 2223356677778888888776 3345 57889999999999999999999999999999998 7789
Q ss_pred HHHHHHhhhCCCcchHHHHHHHHH
Q 004938 557 VLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 557 ~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
..++.+|...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999998887654
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.80 E-value=4.8e-09 Score=93.31 Aligned_cols=122 Identities=10% Similarity=-0.004 Sum_probs=102.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 004938 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEI 535 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 535 (722)
...+...|++++|++.++.... ..+.+...+..+..+|.+.|++++|++.|++. .+.| +..+|..+...+...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 3445667899999999988764 22223556778999999999999999999988 5556 578999999999999999
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHH-HHHHHh
Q 004938 536 ELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGEL-RKSMKE 581 (722)
Q Consensus 536 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 581 (722)
++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988776 476665
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.79 E-value=1.2e-07 Score=106.89 Aligned_cols=190 Identities=13% Similarity=0.036 Sum_probs=151.8
Q ss_pred HccCCchHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHc
Q 004938 361 AHLGVLDQAQRIHLYID--------KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIH 429 (722)
Q Consensus 361 ~~~g~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 429 (722)
...|++++|.+.++.++ +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77899999999999988 33 245677888899999999999999999998874 5778999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 004938 430 GDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALE 508 (722)
Q Consensus 430 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 508 (722)
|++++|+..|++..+. .|+ ...+..+..++...|++++ .+.|+.+.+ ..+.+...|..+..+|.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999984 565 5678889999999999999 999999987 344567889999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHHccCCCCCchH
Q 004938 509 LVETM-PFAPN-VVIWGSLMAACRVHGE-----IELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 509 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
.+++. ...|+ ...|..+..++...++ .+...++.+.+.++.++++...
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 99998 67786 4677777777766555 3445555555555656555443
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.78 E-value=2.3e-07 Score=87.80 Aligned_cols=172 Identities=10% Similarity=-0.011 Sum_probs=129.8
Q ss_pred HHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhH
Q 004938 404 AREVFERMR-RRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG----LVDEGREIFASMT 478 (722)
Q Consensus 404 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 478 (722)
|.+.|++.. ..+..++..+...|...+++++|++.|++..+.| +...+..+...+.. + +.++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444433 2466677777777777888888888888877754 45556666666666 5 7888888888886
Q ss_pred hhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 004938 479 NEYNIPPKYEHYGCMVDLFGR----ANLLREALELVETM-PFAPN---VVIWGSLMAACRV----HGEIELAEFAAKQLL 546 (722)
Q Consensus 479 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 546 (722)
+. -+...+..|..+|.. .+++++|++.+++. ...|. ...+..|...|.. .++.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 52 345667777778876 78899999999887 44443 6788888888888 789999999999999
Q ss_pred ccCCCCCchHHHHHHHhhhC-C-----CcchHHHHHHHHHhCCC
Q 004938 547 QLDPDHDGALVLLSNIYAKD-K-----RWQDVGELRKSMKERGI 584 (722)
Q Consensus 547 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 584 (722)
++ |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66777899999999754 3 89999999999888764
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.78 E-value=9.1e-08 Score=90.33 Aligned_cols=127 Identities=8% Similarity=0.034 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh
Q 004938 421 SMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR 499 (722)
Q Consensus 421 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 499 (722)
.+...|...|++++|+..|++.++. .|+ ...+..+..++...|++++|...|+.+.+ ..|.+...+..+...|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 3788889999999999999998884 565 56788888899999999999999999987 345567788888888876
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004938 500 ANL--LREALELVETMPFAPNV--VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH 552 (722)
Q Consensus 500 ~g~--~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 552 (722)
.|. .+++...++... .|+. ..|..+..++...|++++|+..+++++++.|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445666666653 3443 345556666777899999999999999999974
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.77 E-value=6.8e-08 Score=97.46 Aligned_cols=219 Identities=11% Similarity=0.045 Sum_probs=145.2
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004938 328 NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREV 407 (722)
Q Consensus 328 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 407 (722)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 456677777777665431 110 0 11135666666665543 3456677777777777
Q ss_pred HHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 004938 408 FERMRR-----RN----VISWTSMINAFAIHGDARNALIFFNKMKDES---IDPN--GVTFIGVLYACSHAGLVDEGREI 473 (722)
Q Consensus 408 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 473 (722)
|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...+.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 766542 11 3467778888888899999999888876521 1122 2467777788888 999999999
Q ss_pred HHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 004938 474 FASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELVETM-PF---APN----VVIWGSLMAACRVHGEIELAEFA 541 (722)
Q Consensus 474 ~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 541 (722)
|+.....+.-..+ ...+..+...|.+.|++++|++.+++. .+ .++ ...+..++..+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9888763211111 356778889999999999999999876 11 122 23566667777888999999999
Q ss_pred HHHHHccCCCCCch-----HHHHHHHhhhCCCcchHHH
Q 004938 542 AKQLLQLDPDHDGA-----LVLLSNIYAKDKRWQDVGE 574 (722)
Q Consensus 542 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 574 (722)
+++++ ++|+.... ...++..| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99976543 33455545 4566655554
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.76 E-value=6.1e-08 Score=107.18 Aligned_cols=159 Identities=10% Similarity=0.040 Sum_probs=126.0
Q ss_pred cCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004938 398 CGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREI 473 (722)
Q Consensus 398 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 473 (722)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998875 45788999999999999999999999999984 565 56788899999999999999999
Q ss_pred HHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcc
Q 004938 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVH---GEIELAEFAAKQLLQL 548 (722)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 548 (722)
+++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999873 3456788999999999999999999999987 4445 567888999999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 004938 549 DPDHDGALVLLS 560 (722)
Q Consensus 549 ~p~~~~~~~~l~ 560 (722)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988887776
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.75 E-value=2e-07 Score=89.24 Aligned_cols=184 Identities=16% Similarity=0.016 Sum_probs=132.4
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh----HHHHH
Q 004938 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGG--DLRVNNAIIDMYAKCGSLESAREVFERMRR--RNV----ISWTS 421 (722)
Q Consensus 350 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~ 421 (722)
...+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|+++.+ |+. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566677889999999999999999863221 135677889999999999999999999864 322 24555
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhHhhcC
Q 004938 422 MINAFAI------------------HGDARNALIFFNKMKDESIDPNGVT-FIGVLYACSHAGLVDEGREIFASMTNEYN 482 (722)
Q Consensus 422 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 482 (722)
+..++.. .|+.++|+..|+++++. .|+... ...... .+ .+...+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l~------~~~~~~~~--- 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----LV------FLKDRLAK--- 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----HH------HHHHHHHH---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----HH------HHHHHHHH---
Confidence 5555554 57899999999999984 676532 211111 00 11111111
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 483 IPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 483 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
....+...|.+.|++++|+..++++ ...|+ ...+..+..++.+.|+.++|...++++....|++..
T Consensus 149 ------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 149 ------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 2235678889999999999999987 33343 256888899999999999999999999999998754
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.74 E-value=5.2e-08 Score=83.54 Aligned_cols=114 Identities=16% Similarity=0.061 Sum_probs=81.7
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 004938 447 IDPNG-VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWG 523 (722)
Q Consensus 447 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 523 (722)
+.|+. ..+......+.+.|++++|++.|+...+ ..|.+...|..+..+|.+.|++++|++.+++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 3455666667777777777777777665 23445666777777777777777777777766 3344 467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 004938 524 SLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562 (722)
Q Consensus 524 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 562 (722)
.+..++...|++++|+..|+++++++|++..++..|.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888889999999999998899888777777654
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.73 E-value=6.7e-08 Score=88.48 Aligned_cols=157 Identities=10% Similarity=-0.007 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 464 (722)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.. +..+...+.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~-- 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLE-- 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHH--
Confidence 34455556666666666666666553 34455666666666666666666666665442 23221 111110000
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 004938 465 GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAA 542 (722)
Q Consensus 465 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 542 (722)
+.+.+...+|.+.+++. ...| +...|..+...+...|++++|...+
T Consensus 84 --------------------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 84 --------------------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp --------------------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00111112244444444 2345 4778888899999999999999999
Q ss_pred HHHHccCCCC--CchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 543 KQLLQLDPDH--DGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 543 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
+++++.+|+. +..+..++.+|...|+.++|...+++...
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999875 45888999999999999999998887643
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.73 E-value=1.3e-07 Score=104.41 Aligned_cols=146 Identities=10% Similarity=-0.013 Sum_probs=97.9
Q ss_pred cCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHH
Q 004938 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFF 439 (722)
Q Consensus 363 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 439 (722)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467788888888777653 34567777888888888888888888887654 35667888888888888888888888
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc---CCHHHHHHHHHhC
Q 004938 440 NKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA---NLLREALELVETM 513 (722)
Q Consensus 440 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 513 (722)
++..+. .|+ ...+..+..++...|++++|.+.|+.+.+. .+.+...+..+...+... |++++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 888774 444 457777778888888888888888888763 344566777888888888 8888888888776
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.72 E-value=2.5e-08 Score=88.33 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=84.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 456667777788888888888888877 4445 57889999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhCC
Q 004938 565 KDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m~~~g 583 (722)
..|++++|.+.+++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999988754
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.71 E-value=1.2e-07 Score=86.87 Aligned_cols=158 Identities=11% Similarity=0.040 Sum_probs=103.8
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHH-HHH
Q 004938 352 TMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RNVISWTSMINA-FAI 428 (722)
Q Consensus 352 t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~ 428 (722)
.+......+...|++++|...++.+++.. +.+...+..+...|.+.|++++|...|++..+ |+...+..+... +..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 45566778889999999999999988753 45678889999999999999999999999875 333333222211 122
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 004938 429 HGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507 (722)
Q Consensus 429 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 507 (722)
.+...+|+..|++..+ ..|+ ...+..+..++...|++++|...|+.+.+...-..+...+..+...|...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2233346777777766 3454 456666667777777777777777776652111112335555666666666666665
Q ss_pred HHHHh
Q 004938 508 ELVET 512 (722)
Q Consensus 508 ~~~~~ 512 (722)
..+++
T Consensus 165 ~~y~~ 169 (176)
T 2r5s_A 165 SKYRR 169 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=4.8e-08 Score=86.48 Aligned_cols=97 Identities=9% Similarity=-0.009 Sum_probs=81.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHh
Q 004938 486 KYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563 (722)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 563 (722)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3456667777788888888888888876 3344 6778888888999999999999999999999999999999999999
Q ss_pred hhCCCcchHHHHHHHHHhC
Q 004938 564 AKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 564 ~~~g~~~~a~~~~~~m~~~ 582 (722)
...|++++|.+.++...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.67 E-value=1.4e-06 Score=86.66 Aligned_cols=225 Identities=10% Similarity=0.026 Sum_probs=115.8
Q ss_pred hcCC-chHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccC--CchHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc
Q 004938 327 ENNH-PQEALKLFNEMQVCGMKPDKV-TMLSVISACAHLG--VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY----AKC 398 (722)
Q Consensus 327 ~~g~-~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g--~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~----~~~ 398 (722)
+.|. .++|+++++.++.. .|+.. .++.--.++...+ +++++...+..++..+ +.+..+|+.-...+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 3444 45788888777764 45443 3455555556666 7777777777776653 33444444333333 333
Q ss_pred ---CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----
Q 004938 399 ---GSLESAREVFERMRR---RNVISWTSMINAFAIHGDAR--NALIFFNKMKDESIDPNGVTFIGVLYACSHAGL---- 466 (722)
Q Consensus 399 ---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---- 466 (722)
++++++.++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++++.. .-|...|..-.....+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 566666666666553 45556666555555566655 6666666666532 2233444444444444444
Q ss_pred --HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCHHHH
Q 004938 467 --VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE-ALELVETM-PF----APNVVIWGSLMAACRVHGEIELA 538 (722)
Q Consensus 467 --~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~a 538 (722)
++++++.++.++. ..+-|...|+.+..++.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 5555555555554 233344455555555555444222 33344433 11 12344455555555555555555
Q ss_pred HHHHHHHHc-cCCCCCchHH
Q 004938 539 EFAAKQLLQ-LDPDHDGALV 557 (722)
Q Consensus 539 ~~~~~~~~~-~~p~~~~~~~ 557 (722)
.++++.+.+ .+|-....+.
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHhccChHHHHHHH
Confidence 555555553 4554444333
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.67 E-value=5.9e-08 Score=97.91 Aligned_cols=196 Identities=8% Similarity=-0.030 Sum_probs=149.3
Q ss_pred cCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKM 442 (722)
Q Consensus 363 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 442 (722)
.|++++|.+++++..+..- .. .+...+++++|...|.+. ...|...|++++|+..|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 5677889999888876421 11 011158899998887764 56788899999999999987
Q ss_pred HHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 443 KDE----SIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 443 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
.+. |-.+. ..+|..+...+...|++++|...|+...+-+.-..+ ...+..+..+|.+ |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 662 11111 247888889999999999999999988763211111 3567888899988 9999999999886
Q ss_pred -CC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc------hHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 514 -PF---APN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG------ALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 514 -~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
.+ ..+ ..++..+...+...|++++|+..+++++++.|++.. .+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 111 457888899999999999999999999998765542 5667788888999999999999988
Q ss_pred H
Q 004938 580 K 580 (722)
Q Consensus 580 ~ 580 (722)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=2.3e-05 Score=84.07 Aligned_cols=200 Identities=14% Similarity=0.072 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccC-C-chHHHHHHHHHHhcCCHHHH-HHHHhccC-
Q 004938 236 YGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLK-N-LVVSTAMVSGYSRAGQVEDA-RLIFDQMV- 311 (722)
Q Consensus 236 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~~~~~~g~~~~A-~~~f~~~~- 311 (722)
.+..+++.++... +.+..+|...+..+.+.|+++.|..+|++.... . ...|. .|....+.++. .++.+...
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~ 271 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAVYGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHHHHHHHHHHHh
Confidence 3556677766653 445666776777777777777777777665332 1 11121 12221111111 11111100
Q ss_pred -C-------C---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH-ccCCchHHHHHHHHHHHc
Q 004938 312 -E-------K---DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACA-HLGVLDQAQRIHLYIDKN 379 (722)
Q Consensus 312 -~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~i~~~~~~~ 379 (722)
. + ....|-..+....+.++.+.|..+|++. ... ..+...|......-. ..++.+.|+.+++..++.
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 0 0 1134555555555666677777777776 211 112222221111111 223577777777777664
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 380 AFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 380 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
. +.+...+...++...+.|+.+.|+.+|+++. .....|...+.--...|+.+.+..+++++..
T Consensus 350 ~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 350 H-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 2334445556666667777777777777763 3456666666665666776666666666553
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=8.4e-07 Score=88.70 Aligned_cols=164 Identities=6% Similarity=-0.063 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cc
Q 004938 418 SWTSMINAFAIHGDARNALIFFNKMKDESIDPNG-----VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YE 488 (722)
Q Consensus 418 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 488 (722)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++...+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455667778888888998888887774222111 12334555667788999999998887752211112 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------CC
Q 004938 489 HYGCMVDLFGRANLLREALELVETM----PFAPN-----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD------HD 553 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 553 (722)
.|+.+...|...|++++|++.++++ ...|+ ..++..+...|...|++++|...+++++++.++ ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888999999999999888775 11222 257888999999999999999999999876533 14
Q ss_pred chHHHHHHHhhhCCCcchH-HHHHHHHHh
Q 004938 554 GALVLLSNIYAKDKRWQDV-GELRKSMKE 581 (722)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 581 (722)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5788999999999999999 777776653
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.63 E-value=2.2e-06 Score=85.62 Aligned_cols=160 Identities=7% Similarity=-0.036 Sum_probs=114.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc----chHHH
Q 004938 422 MINAFAIHGDARNALIFFNKMKDES-IDPNGV----TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY----EHYGC 492 (722)
Q Consensus 422 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 492 (722)
.+..+...|++++|..++++..... ..|+.. .+..+...+...|++++|...|+.+.+...-.++. ..++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 122211 22345556667778888888888887622222221 25778
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-----CC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------CchHH
Q 004938 493 MVDLFGRANLLREALELVETM-----PF---APN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH------DGALV 557 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~-----~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 557 (722)
+...|...|++++|++.++++ .. .+. ..+|..+...|...|++++|...+++++++.++. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888775 11 111 2478888999999999999999999999875443 45788
Q ss_pred HHHHHhhhCCC-cchHHHHHHHHHh
Q 004938 558 LLSNIYAKDKR-WQDVGELRKSMKE 581 (722)
Q Consensus 558 ~l~~~~~~~g~-~~~a~~~~~~m~~ 581 (722)
.++.+|.+.|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999998887754
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=1.3e-06 Score=82.38 Aligned_cols=146 Identities=8% Similarity=-0.042 Sum_probs=104.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLV 467 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 467 (722)
+..+...+...|++++|.+.|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34556667788888888888888877777888888888888888888888888877742 22345677777788888888
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLL 546 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 546 (722)
++|.+.|+.+.+. .+.+.... +...| +...|+ ...|..+...+...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~--~~~~~~~~------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQ--LRGNQLID------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHT--TTTCSEEE------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCccHHH------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888877762 22221100 00000 023343 4678888889999999999999999999
Q ss_pred ccCCCCC
Q 004938 547 QLDPDHD 553 (722)
Q Consensus 547 ~~~p~~~ 553 (722)
++.|++.
T Consensus 149 ~~~p~~~ 155 (213)
T 1hh8_A 149 SMKSEPR 155 (213)
T ss_dssp TTCCSGG
T ss_pred HcCcccc
Confidence 9999863
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.61 E-value=1.1e-05 Score=80.22 Aligned_cols=212 Identities=15% Similarity=0.147 Sum_probs=169.6
Q ss_pred CchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CChHHHHHHHHHH----HHc---CCH
Q 004938 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG--SLESAREVFERMRR---RNVISWTSMINAF----AIH---GDA 432 (722)
Q Consensus 365 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~ 432 (722)
..++|......++..+ +.+..+|+.--..+...| +++++++.++.+.. .+..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3467888888888864 445667787777788888 99999999998874 4567787765555 555 789
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH--HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC------H
Q 004938 433 RNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVD--EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL------L 503 (722)
Q Consensus 433 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~ 503 (722)
++++.+++++.+. .| |...|..-...+.+.|.++ +++++++.+.+ ..+-+...|+....++.+.|. +
T Consensus 127 ~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 127 YREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 9999999999985 44 5567777777788888888 99999999997 345667778877777777776 8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccC---CCCCchHHHHHHHhhhCCCcchHHHHHH
Q 004938 504 REALELVETM-PFAP-NVVIWGSLMAACRVHGE-IELAEFAAKQLLQLD---PDHDGALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 504 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
+++++.++++ ...| |...|+-+...+.+.|+ .+.....++++++++ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999887 4444 78899999888888877 444667888888876 8888899999999999999999999999
Q ss_pred HHHh
Q 004938 578 SMKE 581 (722)
Q Consensus 578 ~m~~ 581 (722)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9976
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.60 E-value=2.8e-07 Score=91.81 Aligned_cols=159 Identities=8% Similarity=-0.069 Sum_probs=87.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHH
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFI-GVLY 459 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~ 459 (722)
+...+..+...+...|++++|...|++..+ .+...+..+...|.+.|++++|+..+++.... .|+..... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 344444555555556666666666655442 24455555566666666666666666655442 34433211 1122
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCCH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPN---VVIWGSLMAACRVHGEI 535 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~ 535 (722)
.+...+..++|.+.++.... ..|.+...+..+...|...|++++|++.++++ ...|+ ...+..++..+...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 34445555555666665554 23344556666666666666666666666655 22332 45666677777777777
Q ss_pred HHHHHHHHHHH
Q 004938 536 ELAEFAAKQLL 546 (722)
Q Consensus 536 ~~a~~~~~~~~ 546 (722)
++|...|++.+
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777666654
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.60 E-value=9.7e-07 Score=83.33 Aligned_cols=124 Identities=12% Similarity=0.015 Sum_probs=93.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 004938 456 GVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHG 533 (722)
Q Consensus 456 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 533 (722)
.+...+...|++++|...|+.+. +|+...+..+...|.+.|++++|++.+++. ...| +...|..+...+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 34445555666666666665442 345556666666666666666666666665 2233 5678888899999999
Q ss_pred CHHHHHHHHHHHHccCCCCC----------------chHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 534 EIELAEFAAKQLLQLDPDHD----------------GALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 534 ~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
++++|...+++++++.|++. ..+..++.+|...|++++|.+.++...+...
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 99999999999999888877 8899999999999999999999999987653
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=1.8e-07 Score=80.08 Aligned_cols=96 Identities=9% Similarity=0.055 Sum_probs=88.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 456778899999999999999999987 4455 57899999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhC
Q 004938 565 KDKRWQDVGELRKSMKER 582 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m~~~ 582 (722)
..|++++|.+.+++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999998774
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=1.2e-07 Score=94.11 Aligned_cols=191 Identities=12% Similarity=-0.007 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYA 460 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 460 (722)
...+..+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..+++..+ +.|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 34455566666677777777777766542 3556677777777777777777777777666 3444 3456666777
Q ss_pred HHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004938 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEF 540 (722)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 540 (722)
+...|++++|...|+.+.+.. +.+...+...+....+......... .......++......+ ..+ ..|+.++|.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 777777777777777766521 1111112222222222111111111 1222233344443333 222 3688899999
Q ss_pred HHHHHHccCCCCCchHHHHHHHhhhC-CCcchHHHHHHHHHhC
Q 004938 541 AAKQLLQLDPDHDGALVLLSNIYAKD-KRWQDVGELRKSMKER 582 (722)
Q Consensus 541 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 582 (722)
.++++++++|++......+..++.+. +.+++|.++|.+..+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999998876667777777766 7788999999888654
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.56 E-value=6.1e-07 Score=80.71 Aligned_cols=126 Identities=12% Similarity=0.050 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRV 531 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 531 (722)
+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444445555566666666666665542 2334555666666666677777777666665 2233 56778888888999
Q ss_pred cCCHHHHHHHHHHHHccCCCCCchHHHH--HHHhhhCCCcchHHHHHHHHHh
Q 004938 532 HGEIELAEFAAKQLLQLDPDHDGALVLL--SNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
.|++++|...++++++++|++...+..+ +..+...|++++|.+.++...+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999988777544 4447788999999998887654
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=6.7e-07 Score=75.73 Aligned_cols=114 Identities=21% Similarity=0.202 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 004938 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF-APNVVIWGSLMAAC 529 (722)
Q Consensus 452 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~ 529 (722)
..+..+...+...|++++|.++|+.+.+. .+.+...+..+...+.+.|++++|...++++ .. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555555566666666666666666542 2334455666666666777777777766665 22 23567788888889
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCC
Q 004938 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDK 567 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 567 (722)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999888888888776543
No 126
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.55 E-value=1.2e-06 Score=82.49 Aligned_cols=182 Identities=10% Similarity=0.009 Sum_probs=108.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCCCChhh-HHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 004938 320 AMISGYAENNHPQEALKLFNEMQVCGMKPDKVT-MLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKC 398 (722)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 398 (722)
.....+...|++++|+..|++.... .|+... +.. . ..... ........+.+...|.+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~~~--------------~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVDKN--------------SEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSCTT--------------SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhcch--------------hhhhHHHHHHHHHHHHHC
Confidence 3445566778888888888877764 343221 111 0 00000 001122234467777888
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC--HHHHHH
Q 004938 399 GSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGL--VDEGRE 472 (722)
Q Consensus 399 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~~ 472 (722)
|++++|...|++..+ .+...|..+...|...|++++|+..|++.++ +.|+ ..++..+..++...|. .+.+..
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 888888888877653 4567788888888888888888888888877 3555 4466666666655543 334444
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 004938 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMA 527 (722)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 527 (722)
.+..... ..|....+..+...+...|++++|...|++. ...|+......+..
T Consensus 146 ~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4444321 1222223344556666778888888888876 67787665555444
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=6.4e-07 Score=76.62 Aligned_cols=116 Identities=13% Similarity=0.030 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
.+..+...+...|++++|...|+.+... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4555555566666666666666666552 2334556666666677777777777776665 2233 4677888888899
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcc
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQ 570 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 570 (722)
..|++++|...++++++..|+++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999889999999998888763
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.54 E-value=3.1e-07 Score=80.62 Aligned_cols=96 Identities=10% Similarity=-0.088 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
...+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344556667777888888888888776 3344 57788888888999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhC
Q 004938 565 KDKRWQDVGELRKSMKER 582 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m~~~ 582 (722)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999888764
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=6.4e-07 Score=77.02 Aligned_cols=115 Identities=13% Similarity=0.069 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 004938 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAAC 529 (722)
Q Consensus 452 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 529 (722)
..+..+...+...|++++|...|+.+.+ ..+.+...+..+...|...|++++|++.+++. ...| +...|..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3455555556666666666666666554 22334555666666666667777777666665 2233 567888888889
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCC
Q 004938 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKR 568 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 568 (722)
...|++++|...++++++.+|++...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999988888888888876653
No 130
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.50 E-value=4.5e-06 Score=78.77 Aligned_cols=171 Identities=10% Similarity=-0.020 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC----ChHHHHHHH
Q 004938 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCG----CMDMAKGLF 276 (722)
Q Consensus 201 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 276 (722)
+|++.|++..+.| +...+..+-..+...+++++|...++...+.| ++..+..|..+|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3445555555443 44555555555555566666666666665544 44555555555555 4 566666666
Q ss_pred HhcccC-CchHHHHHHHHHHh----cCCHHHHHHHHhccCCCC-----cchHHHHHHHHHh----cCCchHHHHHHHHHH
Q 004938 277 DKVLLK-NLVVSTAMVSGYSR----AGQVEDARLIFDQMVEKD-----LICWSAMISGYAE----NNHPQEALKLFNEMQ 342 (722)
Q Consensus 277 ~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 342 (722)
++..++ +..++..+...|.. .++.++|.+.|++..+.+ +.++..|...|.. .+++++|+.+|++..
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 655443 34445555555554 556666666666665543 3566666666666 667777777777776
Q ss_pred hCCCCCChhhHHHHHHHHHcc-C-----CchHHHHHHHHHHHcC
Q 004938 343 VCGMKPDKVTMLSVISACAHL-G-----VLDQAQRIHLYIDKNA 380 (722)
Q Consensus 343 ~~g~~p~~~t~~~ll~~~~~~-g-----~~~~a~~i~~~~~~~~ 380 (722)
+. ..+...+..+...|... | +.++|...++...+.|
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 64 12333444555555432 2 6677777777666655
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.48 E-value=1.8e-05 Score=78.95 Aligned_cols=158 Identities=9% Similarity=-0.037 Sum_probs=119.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---Ch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 004938 391 IIDMYAKCGSLESAREVFERMRRR---NV------ISWTSMINAFAIHGDARNALIFFNKMKDESID-PN----GVTFIG 456 (722)
Q Consensus 391 li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ 456 (722)
.+..+...|++++|.+.+++..+. +. ..+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788899999999999987641 11 13334666677788999999999999884222 22 226888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhc----CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEY----NIPPK-YEHYGCMVDLFGRANLLREALELVETM-------PFAPN-VVIWG 523 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 523 (722)
+..++...|++++|..+|+.+.+.. +..+. ..+|..+...|.+.|++++|++.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999988522 11111 247788999999999999999998876 22222 57888
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHcc
Q 004938 524 SLMAACRVHG-EIELAEFAAKQLLQL 548 (722)
Q Consensus 524 ~ll~~~~~~g-~~~~a~~~~~~~~~~ 548 (722)
.+...+...| ++++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999 579999999998864
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.46 E-value=7.5e-07 Score=90.93 Aligned_cols=143 Identities=16% Similarity=0.098 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
...|..+...|.+.|++++|+..|++.+.. .|+...+ ..+++.++-. . ....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~~-~--------~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQA-L--------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHHH-H--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHHH-H--------HHHHHHHHHH
Confidence 445666666666667777777776666653 3332100 0001110000 0 0246677777
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchH-
Q 004938 496 LFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDV- 572 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a- 572 (722)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..|+++++++|++..++..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776 3344 5778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 004938 573 GELRKSMK 580 (722)
Q Consensus 573 ~~~~~~m~ 580 (722)
...++.|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44666664
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.45 E-value=2.7e-07 Score=81.56 Aligned_cols=103 Identities=8% Similarity=-0.063 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
.+..+...+...|++++|...|+.+.. ..+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455566667777777777777777765 23445666777777777778888888777776 3344 4577888888999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
..|++++|+..+++++++.|+++....
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 999999999999999999998876543
No 134
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.44 E-value=1.6e-06 Score=71.80 Aligned_cols=98 Identities=14% Similarity=0.005 Sum_probs=85.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CCchHHHHHH
Q 004938 486 KYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD--HDGALVLLSN 561 (722)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 561 (722)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+ +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4567788888888999999999988876 3333 5778888999999999999999999999999999 8899999999
Q ss_pred HhhhC-CCcchHHHHHHHHHhCC
Q 004938 562 IYAKD-KRWQDVGELRKSMKERG 583 (722)
Q Consensus 562 ~~~~~-g~~~~a~~~~~~m~~~g 583 (722)
+|... |++++|.+.++...+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999999987754
No 135
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.44 E-value=7.5e-07 Score=95.53 Aligned_cols=117 Identities=12% Similarity=0.059 Sum_probs=88.1
Q ss_pred HHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 004938 460 ACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIEL 537 (722)
Q Consensus 460 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 537 (722)
.+.+.|++++|.+.|+++.+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 345566777777777766652 3334566777777777777777777777776 3445 46788999999999999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHH--hhhCCCcchHHHHHHH
Q 004938 538 AEFAAKQLLQLDPDHDGALVLLSNI--YAKDKRWQDVGELRKS 578 (722)
Q Consensus 538 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 578 (722)
|+..++++++++|++...+..++.+ +.+.|++++|.+.+++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999988888 8889999999999874
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.40 E-value=9.7e-07 Score=75.41 Aligned_cols=95 Identities=14% Similarity=0.038 Sum_probs=74.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
..+..+...+.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34556666777777777777777766 3334 567788888888888888888888888888888888888888888888
Q ss_pred CCCcchHHHHHHHHHhC
Q 004938 566 DKRWQDVGELRKSMKER 582 (722)
Q Consensus 566 ~g~~~~a~~~~~~m~~~ 582 (722)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 88888888888887664
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=4.9e-07 Score=82.67 Aligned_cols=117 Identities=13% Similarity=0.122 Sum_probs=66.2
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCH--HHH
Q 004938 464 AGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAA-CRVHGEI--ELA 538 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~~a 538 (722)
.|++++|...++...+. .+.+...+..+...|...|++++|...+++. ...| +...|..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34444555555544431 2233445555555555555555555555554 2222 44555556655 5566666 777
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 539 EFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777777777776666677777777777777777777666654
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.39 E-value=1.1e-06 Score=77.74 Aligned_cols=99 Identities=9% Similarity=0.000 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
.+..+...+.+.|++++|...|+.+.. ..|.+...|..+..+|.+.|++++|++.|++. .+.| +...|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 444555555666666666666666654 23334556666666666666666666666665 3344 3567777888888
Q ss_pred HcCCHHHHHHHHHHHHccCCCCC
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
..|++++|...|++++++.|+++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888888888888888888753
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=2.4e-06 Score=82.87 Aligned_cols=134 Identities=13% Similarity=-0.043 Sum_probs=83.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHh
Q 004938 422 MINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPK--YEHYGCMVDLFGR 499 (722)
Q Consensus 422 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~ 499 (722)
....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 444555666666666666665542 344434444444566667777777766644321 1 111 2245566677777
Q ss_pred cCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 500 ANLLREALELVETM---PFAPN--VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 500 ~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
.|++++|++.|++. +..|. ...+..+..++...|+.++|...|+++++.+|+ +.+...|.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 77777777777766 22143 346667777888899999999999999999998 65555553
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.37 E-value=1e-06 Score=74.69 Aligned_cols=95 Identities=17% Similarity=0.005 Sum_probs=82.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
..+..+...+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556778888999999999999887 4445 678888899999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhC
Q 004938 566 DKRWQDVGELRKSMKER 582 (722)
Q Consensus 566 ~g~~~~a~~~~~~m~~~ 582 (722)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988764
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.37 E-value=4.4e-06 Score=69.73 Aligned_cols=108 Identities=13% Similarity=0.050 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
.+..+...+...|++++|...|+..... .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444444455555555555555555441 2233445555555556666666666665554 2223 4567777777888
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 562 (722)
..|++++|...++++++.+|+++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 88888888888888888888877766666554
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.35 E-value=3e-06 Score=82.22 Aligned_cols=182 Identities=9% Similarity=-0.031 Sum_probs=135.3
Q ss_pred hcCCHHHHHHHHHhcCC---CChHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCCCH---------------
Q 004938 397 KCGSLESAREVFERMRR---RNVISWTSM-------INAFAIHGDARNALIFFNKMKDESIDPNG--------------- 451 (722)
Q Consensus 397 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 451 (722)
..++.+.|.+.|.+..+ .....|+.+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888888888888764 345677777 3555555555556555555443 33332
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 004938 452 -------VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNV----V 520 (722)
Q Consensus 452 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 520 (722)
.....+...+...|++++|.+.|+.+.. + .|+......+...+.+.|++++|+..|++....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--~-~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--A-GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--T-TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c-CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1234456678899999999999998875 2 243326667777899999999999999987433433 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccC--CC-CCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 521 IWGSLMAACRVHGEIELAEFAAKQLLQLD--PD-HDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+++++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67888999999999999999999998543 54 44577899999999999999999999998853
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=2.8e-06 Score=79.23 Aligned_cols=169 Identities=11% Similarity=0.046 Sum_probs=99.8
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004938 394 MYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEG 470 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 470 (722)
.....|++++|.+.++.-.+ .....|..+...+...|++++|+..|++.... .|+...+... ..+.-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH
Confidence 34445555655555543322 23445666677777777777777777777763 2322100000 00000
Q ss_pred HHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004938 471 REIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQL 548 (722)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 548 (722)
. ..+ ....|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...+++++++
T Consensus 83 ~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 000 0245666777777888888888877776 3334 5678888999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhhhCCCcchHH-HHHHHHHhCC
Q 004938 549 DPDHDGALVLLSNIYAKDKRWQDVG-ELRKSMKERG 583 (722)
Q Consensus 549 ~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 583 (722)
+|++...+..++.++...|+.+++. ..++.|..++
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999888888777 5555554443
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.34 E-value=2.4e-06 Score=78.01 Aligned_cols=127 Identities=8% Similarity=0.041 Sum_probs=94.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH-HHhcCCH-
Q 004938 427 AIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL-FGRANLL- 503 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~- 503 (722)
...|++++|+..|++.... .| +...+..+...+...|++++|...|+.+.+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 3457777888888877764 34 4566777777888888888888888887763 23456677777777 7788887
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 504 -REALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 504 -~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
++|...++++ ...| +...|..+...+...|++++|...++++++.+|+++....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 8888888877 3344 4678888899999999999999999999999999865443
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.31 E-value=3.1e-06 Score=73.25 Aligned_cols=97 Identities=11% Similarity=-0.026 Sum_probs=76.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHh
Q 004938 486 KYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY 563 (722)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 563 (722)
+...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556666777777777777777777765 3333 4677888888888888899999999999988898888888899999
Q ss_pred hhCCCcchHHHHHHHHHhC
Q 004938 564 AKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 564 ~~~g~~~~a~~~~~~m~~~ 582 (722)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999998888888764
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.31 E-value=1.2e-06 Score=75.05 Aligned_cols=92 Identities=8% Similarity=0.026 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc-------hHHHHH
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG-------ALVLLS 560 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 560 (722)
+..++..+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|++.. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 445666666666677766666665 3344 4566777777777777777777777777777766543 455667
Q ss_pred HHhhhCCCcchHHHHHHHHHh
Q 004938 561 NIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 561 ~~~~~~g~~~~a~~~~~~m~~ 581 (722)
.+|...|++++|.+.+++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 777777777777777776654
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.31 E-value=1.7e-06 Score=75.72 Aligned_cols=106 Identities=12% Similarity=-0.005 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
.+..+...+...|++++|...|+.+.. ..+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344455566667777777777776665 23345566667777777777777777777766 3334 4567778888899
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
..|++++|...+++++++.|+++.......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 999999999999999999998876655443
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=4.5e-06 Score=77.85 Aligned_cols=151 Identities=11% Similarity=-0.030 Sum_probs=72.8
Q ss_pred hcCCHHHHHH---HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHH
Q 004938 397 KCGSLESARE---VFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDE----SIDPN-GVTFIGVLYACSHAGLVD 468 (722)
Q Consensus 397 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 468 (722)
..|++++|.+ .+..-+.....++..+...|...|++++|+..|++.... +..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 443322234456666666666677777777766665541 11111 234555555666666666
Q ss_pred HHHHHHHHhHhhcCCCC-C----cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCH
Q 004938 469 EGREIFASMTNEYNIPP-K----YEHYGCMVDLFGRANLLREALELVETM----PFAPN----VVIWGSLMAACRVHGEI 535 (722)
Q Consensus 469 ~a~~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~ 535 (722)
+|...++...+...-.+ + ...+..+...+...|++++|.+.+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66666665554211111 1 123444445555555555555554443 00011 12234444455555555
Q ss_pred HHHHHHHHHHHc
Q 004938 536 ELAEFAAKQLLQ 547 (722)
Q Consensus 536 ~~a~~~~~~~~~ 547 (722)
++|...++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 149
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.31 E-value=6.9e-06 Score=81.95 Aligned_cols=161 Identities=10% Similarity=-0.038 Sum_probs=107.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRR--R-NV------ISWTSMINAFAIHGDARNALIFFNKMKDESI---DPN--GVT 453 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t 453 (722)
+...+..+...|++++|.+.+++..+ + +. ..+..+...+...|++++|+..|++...... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455666777777777777765432 1 11 2233455556677788888888888765311 111 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-C------CCCC-HH
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPK-----YEHYGCMVDLFGRANLLREALELVETM-P------FAPN-VV 520 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~------~~p~-~~ 520 (722)
++.+...+...|++++|..+|+.+.+.....|+ ...+..+...|.+.|++++|++.+++. . .... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777778888888888888888887732111222 147778888888888888888888765 1 1111 56
Q ss_pred HHHHHHHHHHHcCCHHHH-HHHHHHHHcc
Q 004938 521 IWGSLMAACRVHGEIELA-EFAAKQLLQL 548 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 548 (722)
+|..+...+...|++++| ...+++++++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788888889999999999 7778887753
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.28 E-value=2.2e-06 Score=77.12 Aligned_cols=102 Identities=11% Similarity=0.024 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
.+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4555555666666666666666666552 2334455555555555555555555555554 2223 2445555555555
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchH
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
..|++++|...++++++++|++...+
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHH
Confidence 55555555555555555555555433
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.27 E-value=5e-06 Score=70.84 Aligned_cols=109 Identities=11% Similarity=-0.071 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 530 (722)
.+..+...+...|++++|...|+...+ ..+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 344445555566666666666666554 22334556666666666667777776666665 3334 4667888888888
Q ss_pred HcCCHHHHHHHHHHHHccC------CCCCchHHHHHHHh
Q 004938 531 VHGEIELAEFAAKQLLQLD------PDHDGALVLLSNIY 563 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 563 (722)
..|++++|...++++++++ |++......+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8999999999999999988 77766666665543
No 152
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.27 E-value=0.00032 Score=70.38 Aligned_cols=178 Identities=12% Similarity=0.075 Sum_probs=105.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccC-CchHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 004938 319 SAMISGYAENNHPQEALKLFNEMQVCGMKPDKV-TMLSVISACAHLG-VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYA 396 (722)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 396 (722)
+.+-....+.+..++|++++++++.. .|+.. .++.--.++...| .++++..++..+++.+ +.+..+|+.-.-.+.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 33333344455567888888888875 45443 4555555556666 4788888888877654 445666665555555
Q ss_pred hc-C-CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004938 397 KC-G-SLESAREVFERMRR---RNVISWTSMINAFAIHGDAR--------NALIFFNKMKDESIDPNGVTFIGVLYACSH 463 (722)
Q Consensus 397 ~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 463 (722)
+. + +++++.++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++++.. .-|...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 55 5 77788888887775 45566665554444444444 6777777777642 2244456555555555
Q ss_pred cCC-------HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 004938 464 AGL-------VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL 502 (722)
Q Consensus 464 ~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 502 (722)
.+. ++++++.++.++. ..+-|...|+-+-.++.+.|+
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 554 5666666666654 234445555555555554443
No 153
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.27 E-value=1.1e-05 Score=72.14 Aligned_cols=127 Identities=13% Similarity=-0.004 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
..|..+...+...|++++|+..|++.... .| +...+..+..++...|++++|...++...+. .+.+...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 45666677777788888888888877764 33 4556777777778888888888888887762 3445667777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHHcCCHHHHHHHHHHHHc
Q 004938 496 LFGRANLLREALELVETM-PFAP-NVVIWGS--LMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
.+.+.|++++|.+.+++. ...| +...+.. +...+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888776 3333 3444533 33336677888888888887654
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.26 E-value=9.8e-05 Score=73.72 Aligned_cols=229 Identities=14% Similarity=0.055 Sum_probs=131.4
Q ss_pred HhcCCch-HHHHHHHHHHhCCCCCChhh-HHHHHHHHHccCC----------chHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 326 AENNHPQ-EALKLFNEMQVCGMKPDKVT-MLSVISACAHLGV----------LDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 326 ~~~g~~~-~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~----------~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
.+.|.++ +|++++..++.. .|+..| ++.--..+...+. ++++..++..++... +.+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4455554 678888887764 455443 3332222222222 456666666666653 445666665555
Q ss_pred HHHhcC--CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---
Q 004938 394 MYAKCG--SLESAREVFERMRR---RNVISWTSMINAFAIHGD-ARNALIFFNKMKDESIDPNGVTFIGVLYACSHA--- 464 (722)
Q Consensus 394 ~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--- 464 (722)
.+.+.| .++++..+++.+.+ +|..+|+--.-.+...|. .+++++.++++++.. .-|...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 566666 37777777777764 566777776666667776 477888888777742 22344555444444433
Q ss_pred -----------CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc-----------CCHHHHHHHHHhC-CCCCCHHH
Q 004938 465 -----------GLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA-----------NLLREALELVETM-PFAPNVVI 521 (722)
Q Consensus 465 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~~ 521 (722)
+.++++++.+..... -.|-|...|+-+-..+.+. +.++++++.++++ ...||. .
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred cccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 446677777776665 3344555665554444444 3466666666666 445553 3
Q ss_pred HHHHHHHH-----HHcCCHHHHHHHHHHHHccCCCCCchHHHHHH
Q 004938 522 WGSLMAAC-----RVHGEIELAEFAAKQLLQLDPDHDGALVLLSN 561 (722)
Q Consensus 522 ~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 561 (722)
|..+..+. ...|..++....+.++.+++|...+.|..+..
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 43222221 12455666677777777777766665555443
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=6.9e-06 Score=73.81 Aligned_cols=93 Identities=16% Similarity=-0.011 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
..|..+...+...|++++|+..|++.++. .| +...+..+..++...|++++|+..|+...+. .+.+...|..+..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34455555555555555555555555542 23 2334445555555555555555555555541 2233445555555
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 004938 496 LFGRANLLREALELVETM 513 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~ 513 (722)
+|.+.|++++|.+.|++.
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 555555555555555544
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.25 E-value=1.1e-05 Score=79.93 Aligned_cols=190 Identities=9% Similarity=-0.108 Sum_probs=120.3
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHH
Q 004938 350 KVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNVISWTSMINAF 426 (722)
Q Consensus 350 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 426 (722)
...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...+++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555566666677777777777666653 33566777888888888888888888888765 4567888888889
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 004938 427 AIHGDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 505 (722)
...|++++|+..|++..+. .|+.. .+...+....+ ..++..... ... ...+.+......+...+ .|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~-~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRWNS-IEE-RRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHHHH-HHH-TCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHHHH-HHH-HHHhhhHHHHHHHHHHH--HHHHHH
Confidence 9999999999999887763 33221 11111111111 111122222 222 24556666655554443 689999
Q ss_pred HHHHHHhC-CCCCCHH-HHHHHHHHHHHc-CCHHHHHHHHHHHHccC
Q 004938 506 ALELVETM-PFAPNVV-IWGSLMAACRVH-GEIELAEFAAKQLLQLD 549 (722)
Q Consensus 506 A~~~~~~~-~~~p~~~-~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~ 549 (722)
|++.+++. ...|+.. ....+...+... +.+++|.++|+++.+..
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999877 6677654 334444444444 67888999999887643
No 157
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.23 E-value=4.1e-05 Score=76.81 Aligned_cols=214 Identities=14% Similarity=0.104 Sum_probs=156.7
Q ss_pred cCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHHc-C-CHHHHH
Q 004938 363 LGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCG-SLESAREVFERMRR---RNVISWTSMINAFAIH-G-DARNAL 436 (722)
Q Consensus 363 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~ 436 (722)
.+..++|.++...++..+ +.+..+|+.--..+...| .++++.+.++.+.. ++..+|+.-...+... + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344567888999998875 445667777777777788 59999999998875 5677888887777776 7 899999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH--------HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC-----
Q 004938 437 IFFNKMKDESIDP-NGVTFIGVLYACSHAGLVD--------EGREIFASMTNEYNIPPKYEHYGCMVDLFGRANL----- 502 (722)
Q Consensus 437 ~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----- 502 (722)
++++++.+. .| |...|..-...+.+.|.++ +++++++.+.+ ..+-+...|+....++.+.+.
T Consensus 146 ~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 146 EYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccccch
Confidence 999999874 44 4556666555555555555 89999999987 345677888888888888876
Q ss_pred --HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHccC------CCC
Q 004938 503 --LREALELVETM-PFAP-NVVIWGSLMAACRVHGEI--------------------ELAEFAAKQLLQLD------PDH 552 (722)
Q Consensus 503 --~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~ 552 (722)
++++++.++++ ...| |...|+-+-..+.+.|+. .........+.... +..
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 78999999877 4445 678998888777776653 22333333333222 345
Q ss_pred CchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 553 DGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
+.+...|+++|...|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 55677999999999999999999999864
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=6.3e-06 Score=72.21 Aligned_cols=92 Identities=14% Similarity=-0.028 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 490 YGCMVDLFGRANLLREALELVETM-PFAPN----VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE 110 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHH
Confidence 333444444444444444444443 23333 2344444444444455555555555554444444444444444455
Q ss_pred hCCCcchHHHHHHHHHh
Q 004938 565 KDKRWQDVGELRKSMKE 581 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m~~ 581 (722)
..|++++|.+.+++..+
T Consensus 111 ~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 111 KLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555544444433
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.22 E-value=5.5e-06 Score=69.14 Aligned_cols=97 Identities=13% Similarity=0.095 Sum_probs=86.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
...+..++..+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 346777888999999999999999987 3334 67888999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhCC
Q 004938 565 KDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m~~~g 583 (722)
..|++++|.+.++...+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999987753
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.21 E-value=6.5e-06 Score=76.71 Aligned_cols=81 Identities=19% Similarity=0.004 Sum_probs=39.3
Q ss_pred cCCHHHHHH---HHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCCchH
Q 004938 297 AGQVEDARL---IFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVC----GMKP-DKVTMLSVISACAHLGVLDQ 368 (722)
Q Consensus 297 ~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~ 368 (722)
.|++++|.+ .+..-+.....+++.+...+...|++++|+..|++.... +..| ...++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 344455544 343322223445666666666667777776666665441 1111 12334444444555555555
Q ss_pred HHHHHHHHH
Q 004938 369 AQRIHLYID 377 (722)
Q Consensus 369 a~~i~~~~~ 377 (722)
|...+....
T Consensus 85 A~~~~~~al 93 (203)
T 3gw4_A 85 ARRCFLEER 93 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 161
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.21 E-value=7.4e-06 Score=69.09 Aligned_cols=97 Identities=23% Similarity=0.267 Sum_probs=87.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456788899999999999999999987 3333 67889999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhCC
Q 004938 565 KDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m~~~g 583 (722)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987753
No 162
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.21 E-value=4.5e-06 Score=71.53 Aligned_cols=98 Identities=10% Similarity=0.009 Sum_probs=88.7
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 004938 485 PKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNI 562 (722)
Q Consensus 485 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 562 (722)
.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|++...+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34567788899999999999999999987 5555 678899999999999999999999999999999999999999999
Q ss_pred hhhCCCcchHHHHHHHHHhC
Q 004938 563 YAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 563 ~~~~g~~~~a~~~~~~m~~~ 582 (722)
|...|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=1.5e-05 Score=69.74 Aligned_cols=109 Identities=10% Similarity=-0.037 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMA 527 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 527 (722)
+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|++.+++. ...| +...|..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 33344444444444444444444432 1222 344455555555666666666665554 2233 5667888888
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 528 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
.+...|++++|...++++++++|++...+..+..+..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 89999999999999999999999988777777666543
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.19 E-value=1.5e-05 Score=85.39 Aligned_cols=83 Identities=13% Similarity=0.050 Sum_probs=40.8
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 004938 395 YAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEG 470 (722)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 470 (722)
|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|++.|++..+. .|+ ...+..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4445555555555554432 23445555555555555555555555555542 332 23444444455555555555
Q ss_pred HHHHHHhHh
Q 004938 471 REIFASMTN 479 (722)
Q Consensus 471 ~~~~~~~~~ 479 (722)
.+.|+++.+
T Consensus 94 ~~~~~~al~ 102 (477)
T 1wao_1 94 LRDYETVVK 102 (477)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 165
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.17 E-value=4.3e-06 Score=73.13 Aligned_cols=63 Identities=14% Similarity=-0.026 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc-------CCCCCchH----HHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 520 VIWGSLMAACRVHGEIELAEFAAKQLLQL-------DPDHDGAL----VLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 520 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..|..+..++...|++++|+..+++++++ +|++...| +..+.++...|++++|...+++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888888888888888888888888 99988888 89999999999999999999888763
No 166
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.15 E-value=1.1e-05 Score=82.09 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=68.1
Q ss_pred CCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----------------hHHHHHHHHH
Q 004938 364 GVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR--RN----------------VISWTSMINA 425 (722)
Q Consensus 364 g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~li~~ 425 (722)
+++++|...+....+.. +.+...+..+...|.+.|++++|...|++..+ |+ ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44455544444333221 22456788899999999999999999998763 32 3556666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 004938 426 FAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 426 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
|.+.|++++|+..|++.++. .|+ ...+..+..++...|++++|...|+.+.+
T Consensus 206 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666553 332 33455555555555555555555555544
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.15 E-value=9.6e-06 Score=70.09 Aligned_cols=100 Identities=9% Similarity=-0.093 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 004938 450 NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMA 527 (722)
Q Consensus 450 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 527 (722)
+...+..+...+...|++++|...|+..... .+.+...|..+..+|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3445556666666666666666666666552 2334556666677777777777777777665 2334 4677888888
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCC
Q 004938 528 ACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 528 ~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
.+...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888899999999999999988887
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.11 E-value=8.6e-06 Score=68.91 Aligned_cols=98 Identities=10% Similarity=0.071 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 004938 454 FIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRV 531 (722)
Q Consensus 454 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 531 (722)
+..+...+.+.|++++|...|+.+.+ ..+.+...|..+..++.+.|++++|+..+++. ...| +...|..+...+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34445566677777777777777765 23445666777777777777777777777776 4445 46788888888999
Q ss_pred cCCHHHHHHHHHHHHccCCCCC
Q 004938 532 HGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
.|++++|+..++++++++|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999988764
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.11 E-value=7.2e-06 Score=69.90 Aligned_cols=105 Identities=8% Similarity=-0.045 Sum_probs=57.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC----CCC----HHHHHHHHH
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PF----APN----VVIWGSLMA 527 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ll~ 527 (722)
+...+...|++++|...|+.+.+. .+.+...+..+...|...|++++|...+++. .. .++ ..+|..+..
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 333344444444444444444331 1223334444444444455555555444443 11 122 556777777
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 528 ACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 528 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
.+...|++++|...++++++..| ++.....+..++.
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 88888888888888888888887 4555555555443
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=7.4e-06 Score=69.96 Aligned_cols=91 Identities=16% Similarity=0.121 Sum_probs=55.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---CchHHHHHHHh
Q 004938 492 CMVDLFGRANLLREALELVETM-PFAPN-V---VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH---DGALVLLSNIY 563 (722)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 563 (722)
.+...+.+.|++++|.+.+++. ...|+ . ..|..+...+...|++++|...++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444555566666666666554 11222 1 355556666666777777777777777776666 45566667777
Q ss_pred hhCCCcchHHHHHHHHHhC
Q 004938 564 AKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 564 ~~~g~~~~a~~~~~~m~~~ 582 (722)
...|++++|...++.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777666553
No 171
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.09 E-value=3.6e-05 Score=65.39 Aligned_cols=115 Identities=19% Similarity=0.072 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 496 (722)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+. .+.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHH
Confidence 445555566666666666666666665531 223445556666666666666666666666652 23345556666666
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 004938 497 FGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGE 534 (722)
Q Consensus 497 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 534 (722)
|.+.|++++|.+.+++. ...| +...+..+...+...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 66667777776666665 2233 44555555555555554
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.08 E-value=1.2e-05 Score=66.36 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP---NVVIWGSLMAA 528 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~ 528 (722)
.+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444455555556666666666655542 2334455566666666666666666666665 2233 46677778888
Q ss_pred HHHc-CCHHHHHHHHHHHHccCCCCC
Q 004938 529 CRVH-GEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 529 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 553 (722)
+... |++++|...++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888888754
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.08 E-value=0.00034 Score=69.83 Aligned_cols=218 Identities=13% Similarity=0.099 Sum_probs=154.7
Q ss_pred HccCCch-HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CChHHHHHHHHHH
Q 004938 361 AHLGVLD-QAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGS----------LESAREVFERMRR---RNVISWTSMINAF 426 (722)
Q Consensus 361 ~~~g~~~-~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~ 426 (722)
.+.|.++ +|......++..+ +.+..+|+.=-..+...|. ++++..+++.+.. ++..+|+.-.-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455554 7888888888764 3344555543333333232 6788888887764 6778898888888
Q ss_pred HHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc---
Q 004938 427 AIHGD--ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGL-VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRA--- 500 (722)
Q Consensus 427 ~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 500 (722)
...|+ +++++.+++++.+.. +-|...|+.-...+.+.|. ++++++.++.+++ ..+.+...|+....++.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhc
Confidence 88884 899999999999852 3355677777777778887 6999999999997 3456777787777766655
Q ss_pred -----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHccCCCCCchH
Q 004938 501 -----------NLLREALELVETM-PFAP-NVVIWGSLMAACRVH-----------GEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 501 -----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
+.++++++.+++. ...| |...|+-+-..+... +.++++++.++++++++|++.-.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 5688999999887 3445 678888666665554 458999999999999999985443
Q ss_pred HHHHHH---hhhCCCcchHHHHHHHHHhC
Q 004938 557 VLLSNI---YAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 557 ~~l~~~---~~~~g~~~~a~~~~~~m~~~ 582 (722)
..++.+ ....|..++....+.++++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 333322 22457777888888888764
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.07 E-value=1.7e-05 Score=84.47 Aligned_cols=144 Identities=14% Similarity=0.070 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
...|..+...|.+.|++++|+..|++.++. .|+...+ . -++..+ .... ....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~~--------~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SESF--------LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHHH--------HHHHHHHHHH
Confidence 456777777788888888888888877762 3332100 0 000000 0000 1246677788
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHH
Q 004938 496 LFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 573 (722)
+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776 3344 57789999999999999999999999999999999999999999999999999887
Q ss_pred H-HHHHHHh
Q 004938 574 E-LRKSMKE 581 (722)
Q Consensus 574 ~-~~~~m~~ 581 (722)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4555543
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.06 E-value=3.3e-05 Score=65.76 Aligned_cols=101 Identities=15% Similarity=0.083 Sum_probs=63.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhcCCCCCc---chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 004938 458 LYACSHAGLVDEGREIFASMTNEYNIPPKY---EHYGCMVDLFGRANLLREALELVETM-PFAPN----VVIWGSLMAAC 529 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 529 (722)
...+...|++++|...|+.+.+. .+.+. ..+..+...|.+.|++++|.+.+++. ...|+ ...+..+...+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34445556666666666655542 11222 34555666666666666666666655 22232 45677778888
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 530 RVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
...|++++|...++++++..|+++.......
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 8899999999999999999998765544433
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.06 E-value=2.1e-05 Score=70.42 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 519 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3577778888888888888888888888888888888888888888888888888888887664
No 177
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.05 E-value=0.00015 Score=79.05 Aligned_cols=168 Identities=11% Similarity=0.048 Sum_probs=134.8
Q ss_pred CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 004938 400 SLESAREVFERMRR---RNVISWTSMINAFAIHGD----------ARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAG 465 (722)
Q Consensus 400 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 465 (722)
..++|.+.++.+.+ .+...|+.--..+...|+ ++++++.++++.+. .|. ..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34567777777764 345677776666666666 89999999999884 554 457777777888888
Q ss_pred --CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc--------
Q 004938 466 --LVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRAN-LLREALELVETM-PFAP-NVVIWGSLMAACRVH-------- 532 (722)
Q Consensus 466 --~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-------- 532 (722)
+++++++.++.+.+ ..+-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 77999999999998 34566778888888888888 899999999888 5555 678898888877663
Q ss_pred ------CCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcch
Q 004938 533 ------GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQD 571 (722)
Q Consensus 533 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 571 (722)
+.++++.+.+.++++.+|++..+|..+..++.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999988655
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.04 E-value=2.8e-06 Score=71.42 Aligned_cols=83 Identities=18% Similarity=0.144 Sum_probs=54.1
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHH
Q 004938 500 ANLLREALELVETM-PF---APN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGE 574 (722)
Q Consensus 500 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 574 (722)
.|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666555 33 232 35666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhC
Q 004938 575 LRKSMKER 582 (722)
Q Consensus 575 ~~~~m~~~ 582 (722)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766553
No 179
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.03 E-value=6.5e-06 Score=76.67 Aligned_cols=145 Identities=12% Similarity=0.030 Sum_probs=81.1
Q ss_pred HHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCh----------------HH
Q 004938 358 SACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRR---RNV----------------IS 418 (722)
Q Consensus 358 ~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~----------------~~ 418 (722)
......|+++.+.+.+....+.. ......+..+...+.+.|++++|...|++..+ .+. ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 34445666777666665332211 11345567788889999999999999998753 222 56
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 004938 419 WTSMINAFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLF 497 (722)
Q Consensus 419 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 497 (722)
|..+..+|...|++++|+..+++.... .| +...+..+..++...|++++|...|+...+. .+.+...+..+..++
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHH
Confidence 666666677777777777777776663 33 3445666666666666666666666666542 222344444444444
Q ss_pred HhcCCHHHHH
Q 004938 498 GRANLLREAL 507 (722)
Q Consensus 498 ~~~g~~~~A~ 507 (722)
.+.|+.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 180
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.02 E-value=1.1e-05 Score=69.03 Aligned_cols=106 Identities=14% Similarity=0.052 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
..|..+...+.+.|++++|+..|++.++ +.|+ ...|..+..++...|++++|++.++...+.. +.+...+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~-- 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG--RETRADYKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC--cccchhhHHH--
Confidence 3455555666666666666666666555 2343 3345555555555566666655555554310 0001111111
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004938 496 LFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD 551 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 551 (722)
..+|..+...+...|++++|+..|+++++..|+
T Consensus 83 -----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 -----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 235667778888999999999999999998885
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=3.2e-05 Score=81.82 Aligned_cols=163 Identities=7% Similarity=-0.072 Sum_probs=101.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhHhhc---CCCC-Ccch
Q 004938 419 WTSMINAFAIHGDARNALIFFNKMKDE-SIDPNGV----TFIGVLYACSHAGLVDEGREIFASMTNEY---NIPP-KYEH 489 (722)
Q Consensus 419 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~ 489 (722)
+..+...|...|++++|.+.+.++... +..++.. +.+.+-..+...|..+++..++....... +..+ ....
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455666677777777777777665541 1112211 12222233345677777777776655321 1111 1345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---C----Cc
Q 004938 490 YGCMVDLFGRANLLREALELVETM-----P--FAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD---H----DG 554 (722)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~----~~ 554 (722)
+..++..|...|++++|..++++. + .+|. ..++..++..|...|++++|...+++++...|. + ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667778888888888888887765 1 1222 356777888888888899888888888765322 2 13
Q ss_pred hHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 555 ALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 555 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
.+..++.++...|++++|...+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455677788888888888887766643
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.99 E-value=1.1e-05 Score=72.25 Aligned_cols=76 Identities=18% Similarity=0.027 Sum_probs=60.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC-chHHHHHHH
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD-GALVLLSNI 562 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 562 (722)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 356777888888888888888888776 4445 567889999999999999999999999999999987 444444443
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.98 E-value=1.6e-05 Score=67.68 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=84.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-------CchHHH
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH-------DGALVL 558 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 558 (722)
..+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|++ ...+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45777888999999999999999987 3333 67888899999999999999999999999998876 778889
Q ss_pred HHHHhhhCCCcchHHHHHHHHHhC
Q 004938 559 LSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 559 l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
++.+|...|++++|.+.++...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998774
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.95 E-value=1.6e-05 Score=81.02 Aligned_cols=147 Identities=10% Similarity=-0.034 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDL 496 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 496 (722)
..|..+...+.+.|++++|+..|++.+. +.|+... +...|..+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3466667777788888888888888776 3555432 223344444332221 1357778888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHh-hhCCCcchHH
Q 004938 497 FGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIY-AKDKRWQDVG 573 (722)
Q Consensus 497 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~ 573 (722)
|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++..++..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776 3344 5678888888888888999999999999888888888888888774 4556777788
Q ss_pred HHHHHHHhCC
Q 004938 574 ELRKSMKERG 583 (722)
Q Consensus 574 ~~~~~m~~~g 583 (722)
+.++.|.+..
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888776543
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.95 E-value=2.4e-05 Score=80.67 Aligned_cols=139 Identities=13% Similarity=0.005 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
...|..+...+.+.|++++|+..|++.++. .|+.. .....+++.. ..+.+...|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~~---------~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGAK---------LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHGG---------GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHHH---------HHHHHHHHHHHHHH
Confidence 345777778888888888888888887652 11100 0001111110 01123457788888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHH
Q 004938 496 LFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVG 573 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 573 (722)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999887 5556 46788899999999999999999999999999999999999999998888887766
Q ss_pred HH
Q 004938 574 EL 575 (722)
Q Consensus 574 ~~ 575 (722)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.94 E-value=3.2e-05 Score=68.53 Aligned_cols=136 Identities=13% Similarity=0.042 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHH
Q 004938 417 ISWTSMINAFAIHGDARNALIFFNKMKDESI-DPNG----VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYG 491 (722)
Q Consensus 417 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 491 (722)
.++..+...|...|++++|+..+++..+... .++. .++..+...+...|++++|..+++...+...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--------- 80 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR--------- 80 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------
Confidence 3556666666677777777777766554210 0111 2344444455555555555555554433100
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------CCchHHHHHHHhh
Q 004938 492 CMVDLFGRANLLREALELVETMPFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPD------HDGALVLLSNIYA 564 (722)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~ 564 (722)
..+..+ ....+..+...+...|++++|...++++++..+. ....+..++.+|.
T Consensus 81 --------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 81 --------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------------------HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 000000 1234556666677777777777777777654321 1235667777888
Q ss_pred hCCCcchHHHHHHHHHh
Q 004938 565 KDKRWQDVGELRKSMKE 581 (722)
Q Consensus 565 ~~g~~~~a~~~~~~m~~ 581 (722)
..|++++|.+.+++..+
T Consensus 141 ~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 88888888877776654
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.93 E-value=1.7e-05 Score=69.40 Aligned_cols=71 Identities=14% Similarity=0.094 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch
Q 004938 489 HYGCMVDLFGRANLLREALELVETM--------PFAPNV-VIW----GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 555 (722)
.|..+..++.+.|++++|+..+++. .+.|+. ..| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 4445555555555555555554443 347864 688 899999999999999999999999999998765
Q ss_pred HHHH
Q 004938 556 LVLL 559 (722)
Q Consensus 556 ~~~l 559 (722)
+..+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 4433
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.92 E-value=6.5e-05 Score=79.90 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=87.6
Q ss_pred HHhcCCHHHHHHHHHHhHhhc--CCCC----CcchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 004938 461 CSHAGLVDEGREIFASMTNEY--NIPP----KYEHYGCMVDLFGRANLLREALELVETM---------PFAPNV-VIWGS 524 (722)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 524 (722)
+...|++++|..++++..+.. -+.| ...+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566666666655554321 1111 1345666777777777777777776654 344554 67899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHc-----cCCCCCchH---HHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 525 LMAACRVHGEIELAEFAAKQLLQ-----LDPDHDGAL---VLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 525 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
|...|...|++++|+.+++++++ ++|+++.+- ..+..++...|++++|+.++..+++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 578876543 477888889999999999999998754
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.87 E-value=5.7e-05 Score=66.88 Aligned_cols=136 Identities=13% Similarity=0.031 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----
Q 004938 385 LRVNNAIIDMYAKCGSLESAREVFERMRR-----RNV----ISWTSMINAFAIHGDARNALIFFNKMKDESI-DPN---- 450 (722)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---- 450 (722)
..++..+...|...|++++|...+++..+ .+. .++..+...|...|++++|+..+++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34678888999999999999999988764 221 4788889999999999999999999776210 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 004938 451 GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP-NVVIWGSLMAAC 529 (722)
Q Consensus 451 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~ 529 (722)
...+..+...+...|++++|.+.++...+. .++.+..+ ....+..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----------------------------~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-----------------------------AQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------------------------HHHccchHhHHHHHHHHHHHH
Confidence 234556666777777777777777665541 01111001 123456666677
Q ss_pred HHcCCHHHHHHHHHHHHccC
Q 004938 530 RVHGEIELAEFAAKQLLQLD 549 (722)
Q Consensus 530 ~~~g~~~~a~~~~~~~~~~~ 549 (722)
...|++++|...+++++++.
T Consensus 140 ~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHH
Confidence 77788888888777776643
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00025 Score=74.84 Aligned_cols=161 Identities=11% Similarity=0.026 Sum_probs=95.6
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHcC-CCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----ChHH
Q 004938 353 MLSVISACAHLGVLDQAQRIHLYIDKNA-FGGDL----RVNNAIIDMYAKCGSLESAREVFERMRR-----R----NVIS 418 (722)
Q Consensus 353 ~~~ll~~~~~~g~~~~a~~i~~~~~~~~-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~ 418 (722)
+..+...|...|++++|.+.+..+.+.- ..++. .+.+.+...+...|+.+.|.++++.... . -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4445555555666666655555544321 00111 1222233334445666777666665432 1 1246
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcC-C--CCC--cc
Q 004938 419 WTSMINAFAIHGDARNALIFFNKMKDE--SI--DPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYN-I--PPK--YE 488 (722)
Q Consensus 419 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~--~~~--~~ 488 (722)
+..+...|...|++++|..++++.... +. +|. ..++..++..|...|++++|..+++....... + ++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677778888888888888888876542 11 222 23577777888888888888888887664221 1 111 24
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 489 HYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
.+..++..+...|++++|...+.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5667777788888988888777654
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.84 E-value=1.1e-05 Score=67.75 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHHhHhhcC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 004938 464 AGLVDEGREIFASMTNEYN--IPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAE 539 (722)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 539 (722)
.|++++|+..|+...+. + .+.+...+..+..+|.+.|++++|++.+++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555541 1 1223445566666666666777776666665 2334 4667778888888899999999
Q ss_pred HHHHHHHccCCCCCchHH
Q 004938 540 FAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 540 ~~~~~~~~~~p~~~~~~~ 557 (722)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999988888765433
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=3.3e-05 Score=63.69 Aligned_cols=91 Identities=18% Similarity=0.018 Sum_probs=73.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------CchHHH
Q 004938 487 YEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDH------DGALVL 558 (722)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 558 (722)
...+..+...+.+.|++++|++.+++. ...| +...|..+...+...|++++|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 445667777888888888888888776 3344 57788899999999999999999999999999998 667778
Q ss_pred HHHHhhhCCCcchHHHHHH
Q 004938 559 LSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 559 l~~~~~~~g~~~~a~~~~~ 577 (722)
++.++...|++++|.+.++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 8888888888777665443
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.79 E-value=2.6e-05 Score=79.46 Aligned_cols=114 Identities=8% Similarity=-0.108 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVH 532 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 532 (722)
.+..+...+.+.|++++|...|+.+... .|+.. .+...|+.+++...+. ...|..+...+...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 3555667778889999999999887762 23211 1334455555554442 13788888999999
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 533 GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 533 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
|++++|+..++++++++|++..++..++.+|...|++++|...+++..+..
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999886643
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.76 E-value=8.8e-05 Score=60.05 Aligned_cols=65 Identities=20% Similarity=0.152 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 518 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57789999999999999999999999999999999999999999999999999999999988764
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.69 E-value=0.00014 Score=57.25 Aligned_cols=80 Identities=24% Similarity=0.270 Sum_probs=61.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
..+..+...+.+.|++++|++.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 45556666777777777777777665 2233 567788888889999999999999999999999998888888888765
Q ss_pred CC
Q 004938 566 DK 567 (722)
Q Consensus 566 ~g 567 (722)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 44
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.68 E-value=8.2e-05 Score=61.95 Aligned_cols=78 Identities=17% Similarity=0.107 Sum_probs=63.2
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 505 EALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 505 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+|++.+++. ...| +...|..+...+...|++++|+..++++++++|++...+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3344 56788888888889999999999999999999998888999999999999999999998887663
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.68 E-value=0.00016 Score=74.53 Aligned_cols=112 Identities=11% Similarity=-0.022 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 004938 452 VTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAP-NVVIWGSLMAACR 530 (722)
Q Consensus 452 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~ 530 (722)
..+..+...+.+.|++++|.+.|+.+.+.. + . .......+++. ...| +..+|..+...+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~------~----~~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---E------G----SRAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---H------H----HHHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---h------c----CccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 456677777788888888888887776510 0 0 00001111111 1223 3568888999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998774
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.67 E-value=2e-05 Score=68.80 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=65.8
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHccCCCCCchHHHHHHHhhh
Q 004938 498 GRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGE----------IELAEFAAKQLLQLDPDHDGALVLLSNIYAK 565 (722)
Q Consensus 498 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 565 (722)
.|.+++++|++.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|+.++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3445566666666655 3334 45566666666655544 5799999999999999999999999999998
Q ss_pred CC-----------CcchHHHHHHHHHhCC
Q 004938 566 DK-----------RWQDVGELRKSMKERG 583 (722)
Q Consensus 566 ~g-----------~~~~a~~~~~~m~~~g 583 (722)
.| ++++|.+.|++..+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999998854
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.60 E-value=0.00032 Score=74.58 Aligned_cols=120 Identities=10% Similarity=-0.002 Sum_probs=72.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRR--R-N---------------VISWTSMINAFAIHGDARNALIFFNKMKDE 445 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 445 (722)
....+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 355678889999999999999999998764 2 2 355666666666666666666666666653
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 004938 446 SIDPN-GVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREAL 507 (722)
Q Consensus 446 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 507 (722)
.|+ ...|..+..++...|++++|...|+.+.+ ..+.+...+..+..++.+.|+.++|.
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333 34555555566666666666666665554 22223344444444444444444443
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.58 E-value=0.00047 Score=75.15 Aligned_cols=150 Identities=12% Similarity=0.011 Sum_probs=124.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCC----------HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH
Q 004938 430 GDARNALIFFNKMKDESIDPNGV-TFIGVLYACSHAGL----------VDEGREIFASMTNEYNIPPKYEHYGCMVDLFG 498 (722)
Q Consensus 430 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 498 (722)
...++|++.+++++. +.|+.. .|+.--.++.+.|. ++++++.++.+.+ ..+.+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 346788999999998 577765 46665566666666 9999999999997 45667888998888999
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCCchHHHHHHHhhhC-------
Q 004938 499 RAN--LLREALELVETM-PFAP-NVVIWGSLMAACRVHG-EIELAEFAAKQLLQLDPDHDGALVLLSNIYAKD------- 566 (722)
Q Consensus 499 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 566 (722)
+.| ++++++++++++ ...| +...|+.-.......| ..+++.+.++++++.+|++..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 789999999998 4444 6789999988888988 899999999999999999999999988888764
Q ss_pred -------CCcchHHHHHHHHHhCC
Q 004938 567 -------KRWQDVGELRKSMKERG 583 (722)
Q Consensus 567 -------g~~~~a~~~~~~m~~~g 583 (722)
+.++++.+.+++..+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC
Confidence 56788888888776543
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.56 E-value=0.00011 Score=78.05 Aligned_cols=115 Identities=10% Similarity=-0.020 Sum_probs=89.3
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCC---chHH
Q 004938 496 LFGRANLLREALELVETM---------PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQ-----LDPDHD---GALV 557 (722)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~ 557 (722)
.+..+|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 23344 36889999999999999999999999986 356665 4677
Q ss_pred HHHHHhhhCCCcchHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhh
Q 004938 558 LLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKP 628 (722)
Q Consensus 558 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 628 (722)
.|+.+|..+|++++|..++++..+--.. . -...||.+.++...+.+...++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~-----------------lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-T-----------------HGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-H-----------------TCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-H-----------------hCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988753111 0 124699999888877777766543
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.55 E-value=6.7e-05 Score=65.44 Aligned_cols=74 Identities=19% Similarity=0.158 Sum_probs=48.1
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCc
Q 004938 503 LREALELVETM-PFAPN-VVIWGSLMAACRVH-----------GEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW 569 (722)
Q Consensus 503 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 569 (722)
+++|+..|++. .+.|+ ...|..+..+|... |++++|+..|+++++++|++..+...+- ..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~ 134 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MT 134 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HH
Confidence 34666666665 44553 45677777777665 5899999999999999999864333322 23
Q ss_pred chHHHHHHHHHhCC
Q 004938 570 QDVGELRKSMKERG 583 (722)
Q Consensus 570 ~~a~~~~~~m~~~g 583 (722)
++|.++.-.+...+
T Consensus 135 ~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 135 AKAPQLHAEAYKQG 148 (158)
T ss_dssp HTHHHHHHHHHHSS
T ss_pred HhCHhccCcccccc
Confidence 45566555555443
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.44 E-value=0.0003 Score=73.60 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=80.8
Q ss_pred HHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCC---chHHH
Q 004938 497 FGRANLLREALELVETM---------PFAPN-VVIWGSLMAACRVHGEIELAEFAAKQLLQ-----LDPDHD---GALVL 558 (722)
Q Consensus 497 ~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~ 558 (722)
+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|+++ ..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44555666666665543 11222 35788888889899999999999988886 345554 46778
Q ss_pred HHHHhhhCCCcchHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHh
Q 004938 559 LSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELK 627 (722)
Q Consensus 559 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 627 (722)
|+.+|...|++++|..++++..+--. +. -...||.+.+++..+.+...+|+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~-~~-----------------lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMR-VT-----------------HGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-HH-----------------TCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH-Hh-----------------cCCCChHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988865211 10 12469999999888888887775
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00039 Score=56.98 Aligned_cols=67 Identities=9% Similarity=-0.069 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 517 PNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 517 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
++...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3566788899999999999999999999999999999999999999999999999999999988753
No 205
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.34 E-value=0.00065 Score=53.78 Aligned_cols=69 Identities=17% Similarity=0.126 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCC
Q 004938 516 APNVVIWGSLMAACRVHGE---IELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGI 584 (722)
Q Consensus 516 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 584 (722)
.+|+..|..+..++...++ .++|..+++++++++|+++.+...++..+...|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3467788888888765554 79999999999999999999999999999999999999999999988654
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.31 E-value=0.0014 Score=56.56 Aligned_cols=89 Identities=7% Similarity=-0.120 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhh---
Q 004938 493 MVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRV----HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAK--- 565 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 565 (722)
|..+|...+.+++|.+.|++.-...+...+..|...|.. .+++++|...++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444555555555544212345555555555555 56666666666666655 345566666666666
Q ss_pred -CCCcchHHHHHHHHHhCC
Q 004938 566 -DKRWQDVGELRKSMKERG 583 (722)
Q Consensus 566 -~g~~~~a~~~~~~m~~~g 583 (722)
.+++++|.+.+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 666777777766666655
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.30 E-value=0.00017 Score=75.38 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCC---chHHHHHHH
Q 004938 501 NLLREALELVETM---------PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQ-----LDPDHD---GALVLLSNI 562 (722)
Q Consensus 501 g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~ 562 (722)
|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ ++|+++ ..+..|+.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 5556666555543 223433 5788888888888888888888888876 355554 457788999
Q ss_pred hhhCCCcchHHHHHHHHHh
Q 004938 563 YAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 563 ~~~~g~~~~a~~~~~~m~~ 581 (722)
|..+|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999888765
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.22 E-value=0.00078 Score=55.82 Aligned_cols=81 Identities=16% Similarity=0.089 Sum_probs=55.7
Q ss_pred HHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004938 470 GREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQ 547 (722)
Q Consensus 470 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 547 (722)
+.+.|+.+.+ ..+.+...+..+...|.+.|++++|+..+++. ...| +...|..+...+...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555554 23344566666777777777777777777665 3334 466788888888888888888888888888
Q ss_pred cCCCC
Q 004938 548 LDPDH 552 (722)
Q Consensus 548 ~~p~~ 552 (722)
+.|+.
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 87753
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.15 E-value=0.00098 Score=52.16 Aligned_cols=64 Identities=25% Similarity=0.277 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 519 VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 519 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4678888889999999999999999999999999999999999999999999999999998774
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.08 E-value=0.0093 Score=59.67 Aligned_cols=138 Identities=12% Similarity=-0.001 Sum_probs=73.9
Q ss_pred CChHHHHHHHHHHH--HcCC---HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHh---cC-----CHHHHHHHHHHhHh
Q 004938 414 RNVISWTSMINAFA--IHGD---ARNALIFFNKMKDESIDPNGV-TFIGVLYACSH---AG-----LVDEGREIFASMTN 479 (722)
Q Consensus 414 ~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~---~g-----~~~~a~~~~~~~~~ 479 (722)
.+...|...+.+.. ..++ ..+|+.+|++.++ ..|+.. .+..+..++.. .+ ......+.+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46667777766543 2333 4788999999888 578743 34433333321 00 01111111111111
Q ss_pred hcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 480 EYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 480 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
....+.+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 0122344555555555555556666666666665 3345655565555566666666666666666666666543
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.06 E-value=0.0022 Score=55.25 Aligned_cols=113 Identities=10% Similarity=-0.040 Sum_probs=91.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCCHH
Q 004938 429 HGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGR----ANLLR 504 (722)
Q Consensus 429 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 504 (722)
.++.++|++.|++..+.| .|+.. +...+...+.+++|.++|+...+. -+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346789999999998877 44433 666677778889999999998873 456778888888887 88999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCC
Q 004938 505 EALELVETMPFAPNVVIWGSLMAACRV----HGEIELAEFAAKQLLQLDP 550 (722)
Q Consensus 505 ~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 550 (722)
+|.+.+++.-..-+...+..|...|.. .++.++|...++++.+.+.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999988333577888888888888 8999999999999988754
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.94 E-value=0.0033 Score=65.64 Aligned_cols=69 Identities=16% Similarity=0.048 Sum_probs=49.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCC
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM---------PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQ-----LDPDH 552 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~ 552 (722)
.+++.|..+|...|++++|+.++++. +..|+. .+++.|...|...|++++|+.+++++++ ++|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44556666666666666666666554 345554 5788999999999999999999999986 47887
Q ss_pred CchH
Q 004938 553 DGAL 556 (722)
Q Consensus 553 ~~~~ 556 (722)
+.+-
T Consensus 421 p~~~ 424 (433)
T 3qww_A 421 PYIS 424 (433)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 6443
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.89 E-value=0.0061 Score=63.67 Aligned_cols=69 Identities=17% Similarity=0.007 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCC
Q 004938 489 HYGCMVDLFGRANLLREALELVETM---------PFAPNV-VIWGSLMAACRVHGEIELAEFAAKQLLQ-----LDPDHD 553 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~ 553 (722)
+++.|..+|...|++++|+.++++. +..|+. .+++.|...|...|++++|+.+++++++ ++|+++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 4555556666666666666665544 344554 5788899999999999999999999886 478887
Q ss_pred chHH
Q 004938 554 GALV 557 (722)
Q Consensus 554 ~~~~ 557 (722)
.+-.
T Consensus 411 ~~~~ 414 (429)
T 3qwp_A 411 LIED 414 (429)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.79 E-value=0.0046 Score=49.24 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=51.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchH
Q 004938 493 MVDLFGRANLLREALELVETM-PFAP-NVV-IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
....+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|...++++++++|++...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 456677788888888888876 3344 456 888888889999999999999999999999988766
No 215
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.65 E-value=0.00022 Score=72.54 Aligned_cols=252 Identities=14% Similarity=0.182 Sum_probs=159.4
Q ss_pred hHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004938 67 LYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKL 146 (722)
Q Consensus 67 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 146 (722)
++.|...-++...|. .|..|..+....++..+|++-|-+. -|+..|..++.++.+.|.+++-...+....+.
T Consensus 41 ldRa~eyA~~~n~p~--VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~ 112 (624)
T 3lvg_A 41 LDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 112 (624)
T ss_dssp STTTTTSSSSCCCCC--CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT
T ss_pred cHHHHHHHHHhCCcc--HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 333433333343343 4888888888888888887766332 26667888888888888888888777766554
Q ss_pred CCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC--------------
Q 004938 147 GFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMS-------------- 212 (722)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------- 212 (722)
..++.+-+.|+-+|++.+++.+-.+.+ ..||+..-..+.+-+...|.++.|.-+|..+...
T Consensus 113 --~ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq 187 (624)
T 3lvg_A 113 --ARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQ 187 (624)
T ss_dssp --CCSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGG
T ss_pred --hcccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 345566678888888888765543322 2345555555555555555555555554443211
Q ss_pred ------CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhccc---CC
Q 004938 213 ------NVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLL---KN 283 (722)
Q Consensus 213 ------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~ 283 (722)
.-.-+..||-.+-.+|...+.+..|...--.++-. +.-...|+..|-..|.+++-..+++.... ..
T Consensus 188 ~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglErAH 262 (624)
T 3lvg_A 188 AAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLERAH 262 (624)
T ss_dssp SSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCC
T ss_pred HHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchh
Confidence 11236678999999999999888776544333322 11233467778888998888888887752 35
Q ss_pred chHHHHHHHHHHhcC--CHHHHHHHHhc-cCCC-------CcchHHHHHHHHHhcCCchHHHH
Q 004938 284 LVVSTAMVSGYSRAG--QVEDARLIFDQ-MVEK-------DLICWSAMISGYAENNHPQEALK 336 (722)
Q Consensus 284 ~~~~~~li~~~~~~g--~~~~A~~~f~~-~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 336 (722)
...++.|.-.|+|-. ++-+=+++|.. +.-+ ....|.-++-.|.+-.+++.|..
T Consensus 263 mGmFTELaILYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 263 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 678888888888763 22222223322 2111 45679999999999888887754
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.61 E-value=0.0033 Score=50.16 Aligned_cols=59 Identities=29% Similarity=0.303 Sum_probs=54.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCCc-hHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 525 LMAACRVHGEIELAEFAAKQLLQLDPDHDG-ALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 525 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455678899999999999999999999999 99999999999999999999999998754
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.61 E-value=0.21 Score=57.08 Aligned_cols=129 Identities=11% Similarity=0.122 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 004938 257 STLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALK 336 (722)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 336 (722)
..++..+.+.|..+.|.++.+.- ..-.......|++++|.++.+.+. +...|..+...+.+.|+++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 55556666666666666553211 111233455677777777766653 45678888888888888888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 337 LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFER 410 (722)
Q Consensus 337 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 410 (722)
.|.++.. |..+...+...|+.+...++-+.+...| -++.....|.+.|++++|.+++.+
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 8887653 3344444555666666555555444433 124444556667777777766544
No 218
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.59 E-value=0.13 Score=42.50 Aligned_cols=140 Identities=9% Similarity=0.050 Sum_probs=101.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 004938 427 AIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREA 506 (722)
Q Consensus 427 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 506 (722)
.-.|..++..++..+.... .+..-|+.++--....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3467788888888877663 34455666665555566666666666666543222 345666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCc
Q 004938 507 LELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585 (722)
Q Consensus 507 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 585 (722)
...+-.++. +.......+.....+|.-++-.+++..++..+|-++.....++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666542 44455667788889999999999999987777777889999999999999999999999999999985
No 219
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.46 E-value=0.01 Score=47.49 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004938 416 VISWTSMINAFAIHGDARNALIFFNKMKDESIDPN-GVTFIGVLYACSHAGLVDEGREIFASMT 478 (722)
Q Consensus 416 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 478 (722)
...|..+...|...|++++|+..|++.++. .|+ ...|..+..++...|++++|.+.|+...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555555555442 232 2344444455555555555555555444
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.37 E-value=0.015 Score=50.05 Aligned_cols=65 Identities=8% Similarity=-0.032 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccC-C-CCCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 517 PNVVIWGSLMAACRVHG---EIELAEFAAKQLLQLD-P-DHDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 517 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
++..+.-.+..++.+.+ ++++|+.+++.+++.+ | ++...++.|+-.|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45555555555555555 4556666666666665 5 3445566666666666666666666666655
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.36 E-value=0.012 Score=56.37 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=71.9
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHccCCCC-CchHHHHHHHhhhC-CCcch
Q 004938 503 LREALELVETM-PFAPN---VVIWGSLMAACRV-----HGEIELAEFAAKQLLQLDPDH-DGALVLLSNIYAKD-KRWQD 571 (722)
Q Consensus 503 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 571 (722)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|+++++++|+. ..+++.++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666665 56676 5688888888888 499999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 004938 572 VGELRKSMKERGILKERA 589 (722)
Q Consensus 572 a~~~~~~m~~~g~~~~~~ 589 (722)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999877664444
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.26 E-value=0.033 Score=55.73 Aligned_cols=132 Identities=12% Similarity=0.088 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHHHHH--hc---CCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh---cC--------CHHHHHHHH
Q 004938 448 DPNGVTFIGVLYACS--HA---GLVDEGREIFASMTNEYNIPPK-YEHYGCMVDLFGR---AN--------LLREALELV 510 (722)
Q Consensus 448 ~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~---~g--------~~~~A~~~~ 510 (722)
+.+...|...+.+.. .. ....+|..+|+++.+ ..|+ ...|..+..+|.- .+ .+..|.+-.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 445566777776543 22 345789999999987 3454 3555544444421 11 122233333
Q ss_pred HhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 511 ETMPF-APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 511 ~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
..+.. ..+..+|..+.-.+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++.....
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 33322 346788888887788889999999999999999975 5677899999999999999999999887754
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.25 E-value=0.0039 Score=63.64 Aligned_cols=421 Identities=11% Similarity=0.111 Sum_probs=251.1
Q ss_pred CCchhHHHHHHHhccCCCCCCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHH
Q 004938 44 SQNSLLLKLLLTSFSLPTTTPSSLYYALSIFSQIPAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSFPPI 123 (722)
Q Consensus 44 ~~~~~~~~~li~~~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 123 (722)
...+.+|+.|-.++.. . +.+.+|..-| +...|...|..+|.+..+.|.+++-+..+...++..- ++..=+.+
T Consensus 51 ~n~p~VWs~LgkAqL~--~--~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteL 122 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQ--K--GMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETEL 122 (624)
T ss_dssp CCCCCCSSSHHHHTTT--S--SSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHH
T ss_pred hCCccHHHHHHHHHHc--c--CchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHH
Confidence 3567789999888887 6 7888887765 4455667799999999999999999988877666532 44445789
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCC------------------------
Q 004938 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMS------------------------ 179 (722)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~------------------------ 179 (722)
+-+|++.+++.+-..++ -.|+..-...+.+-|...|.++.|.-+|..+.
T Consensus 123 i~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998876544332 14666666778888888899999988888775
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 004938 180 YRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTL 259 (722)
Q Consensus 180 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 259 (722)
..++.+|-.+-.+|...+.+.-|.-.--...- .|| -+..++..|-..|.+++-..+++..+... .....+++-|
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHH
Confidence 24778899999999999999877655444432 122 23345666788899988888887766321 3467788888
Q ss_pred HHHHHhcCChHHHHHHHHhcccC-----------CchHHHHHHHHHHhcCCHHHHHHHH-------------hccC--CC
Q 004938 260 ITMYANCGCMDMAKGLFDKVLLK-----------NLVVSTAMVSGYSRAGQVEDARLIF-------------DQMV--EK 313 (722)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~f-------------~~~~--~~ 313 (722)
.-.|+|- +.++-.+.++-.-.+ ....|..++-.|.+-.+++.|.... .++. ..
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVa 348 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA 348 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCS
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcc
Confidence 8888886 355555554433222 3457999999999999998775332 1111 12
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHH
Q 004938 314 DLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIID 393 (722)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 393 (722)
|+..|..-|..|.+.. +..--+++.-+.. +.|.. -+++.+.+.|.+...+..+..... ..+..+-.++-+
T Consensus 349 N~EiyYKAi~FYL~e~-P~lL~DLL~vL~p---rlDh~---RvV~~~~k~~~LpLIkpYL~~Vq~---~N~~aVNeAln~ 418 (624)
T 3lvg_A 349 NVELYYRAIQFYLEFK-PLLLNDLLMVLSP---RLDHT---RAVNYFSKVKQLPLVKPYLRSVQN---HNNKSVNESLNN 418 (624)
T ss_dssp CSHHHHHHHHHHTTSC-CTTSHHHHHHHCT---TCCST---TTHHHHHTTTCGGGGTGGGTSCCC---SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-hHHHHHHHHhccc---cCChH---HHHHHHHhcCCchhhHHHHHHHHH---hhHHHHHHHHHH
Confidence 4555655555555432 2222222222211 11111 123333444444433333322211 224455557777
Q ss_pred HHHhcCCHHHHHHHHHhcC------------CCChHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004938 394 MYAKCGSLESAREVFERMR------------RRNVISWTSM-INAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYA 460 (722)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~------------~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 460 (722)
.|....+++.-+...+.-. +....-+..+ ...|.+++++.+++.+.++ .++ |.-.+..
T Consensus 419 L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dkl------ykDAiet 489 (624)
T 3lvg_A 419 LFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DSL------YKDAMQY 489 (624)
T ss_dssp HHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TCC------TTGGGTT
T ss_pred HHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---ccc------HHHHHHH
Confidence 7777777665554433222 1222222222 2345666777777665432 111 1112333
Q ss_pred HHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004938 461 CSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALEL 509 (722)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 509 (722)
.+.+|+.+-+.++++-..+. -+.+.|...+-.+...=+.+-++++
T Consensus 490 Aa~S~~~elaeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 490 ASESKDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp TTTCCCTTHHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHH
Confidence 45566666666666665542 2234444444444444455555555
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.2 Score=44.22 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=87.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004938 393 DMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGRE 472 (722)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 472 (722)
+...++|+++.|.++.+.+ .+...|..+......+|+.+-|.+.|.+... |..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456788999998888776 4677899999999999999999998887654 3344445566777766665
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004938 473 IFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELAEFAAKQL 545 (722)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 545 (722)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... ....+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 55444432 1 245555666678888888888888764332221 133467777777776654
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.08 E-value=0.022 Score=44.80 Aligned_cols=75 Identities=12% Similarity=-0.016 Sum_probs=56.4
Q ss_pred CCCcchHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHH
Q 004938 484 PPKYEHYGCMVDLFGRANL---LREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVL 558 (722)
Q Consensus 484 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 558 (722)
+++...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|...++++++.+|+ ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 4566777777777765444 68888888877 4556 4667778888899999999999999999999998 333433
Q ss_pred H
Q 004938 559 L 559 (722)
Q Consensus 559 l 559 (722)
+
T Consensus 82 i 82 (93)
T 3bee_A 82 I 82 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.06 E-value=0.29 Score=55.90 Aligned_cols=153 Identities=12% Similarity=0.136 Sum_probs=87.3
Q ss_pred HHhcCCchHHHH-HHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 004938 325 YAENNHPQEALK-LFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLES 403 (722)
Q Consensus 325 ~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 403 (722)
....+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+.. ..-.+....+|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHH
Confidence 345667777665 4311 1 11122255556666677777766544211 111344566788888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCC
Q 004938 404 AREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNI 483 (722)
Q Consensus 404 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 483 (722)
|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+..... |
T Consensus 671 A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~- 737 (814)
T 3mkq_A 671 ARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G- 737 (814)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T-
T ss_pred HHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C-
Confidence 88887665 3567888888888888888888888887643 233444444456555544444433331 1
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 484 PPKYEHYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 484 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
.++.-..+|.+.|++++|.+++.++
T Consensus 738 -----~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 -----KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -----chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2333444455566666666665554
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.65 E-value=0.047 Score=43.97 Aligned_cols=43 Identities=33% Similarity=0.425 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 518 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
...++..|..++.+.|+++.|...++++++++|++..+...+.
T Consensus 45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 4577888999999999999999999999999999976655543
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.61 E-value=0.037 Score=47.55 Aligned_cols=73 Identities=19% Similarity=0.046 Sum_probs=45.9
Q ss_pred CCcchHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHH
Q 004938 485 PKYEHYGCMVDLFGRAN---LLREALELVETM-PFA-P--NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALV 557 (722)
Q Consensus 485 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 557 (722)
++..+...+..++.+.+ +++++..++++. ... | +...+-.|.-+|.+.|++++|++.++++++.+|++..+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34444444444444444 333444444443 112 3 2345566777889999999999999999999999864433
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.37 E-value=1.7 Score=38.18 Aligned_cols=98 Identities=10% Similarity=0.110 Sum_probs=47.9
Q ss_pred CCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHH
Q 004938 298 GQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYID 377 (722)
Q Consensus 298 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 377 (722)
|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-..+-+...
T Consensus 19 g~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~ 87 (177)
T 3mkq_B 19 GNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQ 87 (177)
T ss_dssp TCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333333334433 2344566666666666666666666655432 2233333444555555444444433
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 004938 378 KNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMR 412 (722)
Q Consensus 378 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 412 (722)
..| -++.-...+.-.|+++++.++|.+..
T Consensus 88 ~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 88 TRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 332 12333344445566666666665543
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.35 E-value=0.24 Score=39.69 Aligned_cols=65 Identities=17% Similarity=-0.015 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-------CCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 518 NVVIWGSLMAACRVHGEIELAEFAAKQLLQLD-------PDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 518 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
+..-+-.|...+...|+++.|...++++++.. +.....+..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455678888999999999999999998753 234457889999999999999999999998764
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.85 E-value=0.42 Score=39.38 Aligned_cols=97 Identities=16% Similarity=0.007 Sum_probs=60.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHH
Q 004938 458 LYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE---ALELVETM-PFA-P--NVVIWGSLMAACR 530 (722)
Q Consensus 458 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~ll~~~~ 530 (722)
+..-.....+..+.+-|...... + .++..+--.+..++.+.....+ ++.++++. ... | .....-.|.-++.
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 33334445555666666655542 2 2666666677777777776665 77777766 222 3 1233444556777
Q ss_pred HcCCHHHHHHHHHHHHccCCCCCchH
Q 004938 531 VHGEIELAEFAAKQLLQLDPDHDGAL 556 (722)
Q Consensus 531 ~~g~~~~a~~~~~~~~~~~p~~~~~~ 556 (722)
+.|++++|.+.++.+++.+|++..+.
T Consensus 86 klg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 88888888888888888888776443
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.71 E-value=0.73 Score=37.95 Aligned_cols=88 Identities=13% Similarity=0.021 Sum_probs=58.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhHhhcCCCC--CcchHHHHHHHHHhcCC
Q 004938 428 IHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDE---GREIFASMTNEYNIPP--KYEHYGCMVDLFGRANL 502 (722)
Q Consensus 428 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~ 502 (722)
.......+.+.|.+....|. |+..+-..+..++.++..... ++.+++.+.+. ..| ..+..-.|.-++.|.|+
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhh
Confidence 33445556666666655543 677776677777887776555 88888887763 223 23444456677888999
Q ss_pred HHHHHHHHHhC-CCCCC
Q 004938 503 LREALELVETM-PFAPN 518 (722)
Q Consensus 503 ~~~A~~~~~~~-~~~p~ 518 (722)
+++|.+.++.+ ..+|+
T Consensus 90 Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999888887 55564
No 233
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.64 E-value=8 Score=37.65 Aligned_cols=168 Identities=13% Similarity=0.136 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHH----HHHHHhCCCCCChhhHHHHHHHHHc
Q 004938 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKL----FNEMQVCGMKPDKVTMLSVISACAH 362 (722)
Q Consensus 287 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 362 (722)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44555566666666666665543 22334555665555443 4444556777777777777766655
Q ss_pred cCCch-HHHHHHHHHHH----cC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHc---CCH
Q 004938 363 LGVLD-QAQRIHLYIDK----NA--FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIH---GDA 432 (722)
Q Consensus 363 ~g~~~-~a~~i~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 432 (722)
...-+ .-.++.+.+++ .| -..++.....+...|.+.|++.+|+..|-.-...|...+..|+--+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 33211 12334444443 22 2246778889999999999999999887633222455555555544443 444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 004938 433 RNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNE 480 (722)
Q Consensus 433 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 480 (722)
.++--+.-+ .++ -+.-.|++..|..+|+...++
T Consensus 185 ~e~dlf~~R--------------aVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STVAEFFSR--------------LVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHH--------------HHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred chHHHHHHH--------------HHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 332222111 122 344678888998888877653
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.26 E-value=0.58 Score=51.79 Aligned_cols=53 Identities=19% Similarity=0.055 Sum_probs=49.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 527 AACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 527 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
.-|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|.-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34677899999999999999999999999999999999999999999998887
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.99 E-value=0.6 Score=39.55 Aligned_cols=54 Identities=6% Similarity=-0.058 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc
Q 004938 501 NLLREALELVETM-PF-APNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG 554 (722)
Q Consensus 501 g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 554 (722)
++.++|.++|+.+ .. +.=..+|.....--.++|+++.|..++.+++.+.|.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 4555555555554 10 111667766666677899999999999999998887643
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.85 E-value=2.3 Score=40.73 Aligned_cols=115 Identities=12% Similarity=0.069 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHhcCCCCCccc--HHHHHH-HHHhC--CC------hhHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHc
Q 004938 165 CGKILDARLMFDKMSYRDIVP--WSVMID-GYFQN--GL------FDEVLNLFEEMKMSNVEPD---EMVLSKILSACSR 230 (722)
Q Consensus 165 ~g~~~~A~~~f~~m~~~~~~~--~~~li~-~~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~ 230 (722)
.|+..+-.+.+.+....++.. |..++. ++... |. ...|...+++..+ +.|+ ...|..+...|.+
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 344444445555554333332 655554 33332 32 2345555555554 2444 3456666666666
Q ss_pred -----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHhccc
Q 004938 231 -----AGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANC-GCMDMAKGLFDKVLL 281 (722)
Q Consensus 231 -----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~ 281 (722)
.|+.++|++.|++.++.+..-+..++....+.++.. |+.+.|.+.+++...
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 377777777777777765433466666666666663 677777777666543
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.65 E-value=5.1 Score=33.21 Aligned_cols=84 Identities=11% Similarity=0.096 Sum_probs=57.4
Q ss_pred hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004938 397 KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFAS 476 (722)
Q Consensus 397 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 476 (722)
+||++......+-.+.. +....+.-++.+...|+-++-.+++..+.. ..+|+......+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 45565555555555433 334455566777788888888888877543 2567777788888888888888888888888
Q ss_pred hHhhcCC
Q 004938 477 MTNEYNI 483 (722)
Q Consensus 477 ~~~~~~~ 483 (722)
+-++ |+
T Consensus 151 AC~k-G~ 156 (172)
T 1wy6_A 151 ACKK-GE 156 (172)
T ss_dssp HHHT-TC
T ss_pred HHHh-hh
Confidence 7763 54
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.48 E-value=0.43 Score=40.40 Aligned_cols=54 Identities=11% Similarity=-0.050 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCc
Q 004938 532 HGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585 (722)
Q Consensus 532 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 585 (722)
.+|+++|.++|+.++.+...-+..+...+..-.+.|+...|.+++......+.+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 378999999999998875555556777788888999999999999999886643
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.42 E-value=4.3 Score=34.04 Aligned_cols=47 Identities=11% Similarity=-0.012 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHccCCC-CCchHHHHHHHhhhCCCcchHHHHHHHHHh
Q 004938 535 IELAEFAAKQLLQLDPD-HDGALVLLSNIYAKDKRWQDVGELRKSMKE 581 (722)
Q Consensus 535 ~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 581 (722)
..+++.+++.++..+|. .....+.|+-.+.+.|++++|.++.+.+.+
T Consensus 58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555566666655553 223444555556666666666666666555
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.51 E-value=32 Score=38.94 Aligned_cols=251 Identities=10% Similarity=0.064 Sum_probs=118.7
Q ss_pred HHhcCChHHHHHHHHhcccC----Cch--HHHHHHHHHHhcCCHHHHHHHHhccCC-CC----------cchHHHHHHHH
Q 004938 263 YANCGCMDMAKGLFDKVLLK----NLV--VSTAMVSGYSRAGQVEDARLIFDQMVE-KD----------LICWSAMISGY 325 (722)
Q Consensus 263 ~~~~g~~~~A~~~~~~~~~~----~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~-~~----------~~~~~~li~~~ 325 (722)
....|+.+++..+++..... +.. .-..+.-|...+|..+++...+..... .+ +..-.++.-|+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44556666676666666541 111 122233344555555555555544321 11 11223333444
Q ss_pred HhcCC-chHHHHHHHHHHhCCCCCChhh--HH--HHHHHHHccCCchHHHHHHHHHHHcCCCCChhHHHHHHHHH--Hhc
Q 004938 326 AENNH-PQEALKLFNEMQVCGMKPDKVT--ML--SVISACAHLGVLDQAQRIHLYIDKNAFGGDLRVNNAIIDMY--AKC 398 (722)
Q Consensus 326 ~~~g~-~~~A~~~~~~m~~~g~~p~~~t--~~--~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~--~~~ 398 (722)
+-.|. -+++.+.+..+.... +..+ .. ++...+...|+-+....++..+.+.. +..+...++.++ .-.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 44443 245666666665432 2111 11 12223445566666677776665531 222333333333 356
Q ss_pred CCHHHHHHHHHhcCC-CCh-HHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004938 399 GSLESAREVFERMRR-RNV-ISWT---SMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREI 473 (722)
Q Consensus 399 g~~~~A~~~~~~~~~-~~~-~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 473 (722)
|+.+.+..+.+.+.. .|. .-|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.++
T Consensus 538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 777777766666542 332 2333 23345667777665555777777631 11222222222244445665556666
Q ss_pred HHHhHhhcCCCCCcchHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHHHH
Q 004938 474 FASMTNEYNIPPKYEHYGCMVDLFGRANLL-REALELVETMPFAPNVVIW 522 (722)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~ 522 (722)
++.+.+ ...|.+..-..+.-+....|.. .+|.+.+..+...+|..+-
T Consensus 617 v~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 617 VQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp TTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 655544 2233333333333333334332 5677777777445555433
No 241
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.01 E-value=28 Score=37.62 Aligned_cols=123 Identities=14% Similarity=0.012 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 004938 430 GDARNALIFFNKMKDESIDPNGVTF----IGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLRE 505 (722)
Q Consensus 430 g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 505 (722)
.+.+.|..+|......+ ..+.... ..+.......+...++...+..... ..++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHH
Confidence 47899999998887543 2233322 2233333344535566667766543 12333333334444557899999
Q ss_pred HHHHHHhCCCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 004938 506 ALELVETMPFAP-N-VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLS 560 (722)
Q Consensus 506 A~~~~~~~~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 560 (722)
|...|+.|+..+ + ....-=+..+....|+.++|..+|+++.+ + .+.|-.++
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA 356 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA 356 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence 999999995433 2 22122245567788999999999999975 3 24555443
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.96 E-value=18 Score=35.38 Aligned_cols=167 Identities=13% Similarity=0.113 Sum_probs=92.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHH----HHHHhCCCCCChhhHHHHHHHHHc
Q 004938 287 STAMVSGYSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLF----NEMQVCGMKPDKVTMLSVISACAH 362 (722)
Q Consensus 287 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~ 362 (722)
+.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44455556666666666665433 223344556655444433 444556777777777777776665
Q ss_pred cCCch-HHHHHHHHHHH----cC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHH
Q 004938 363 LGVLD-QAQRIHLYIDK----NA--FGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNA 435 (722)
Q Consensus 363 ~g~~~-~a~~i~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 435 (722)
...-+ .=..+.+.+++ .| -.-++.....+...|.+.+++.+|+..|-.-..+....+..|+--+...+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 54322 11233333332 23 2346777888999999999999999888432222235565555444433332211
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 004938 436 LIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 436 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
|...-..++ -|.-.+++..|...++...+
T Consensus 187 --------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 --------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 111222222 34556788888887776664
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.22 E-value=39 Score=38.28 Aligned_cols=286 Identities=10% Similarity=0.003 Sum_probs=144.9
Q ss_pred HHHHHHHHHHhcCChHHH-HHHHHhccc--CCchH-HHHHHHHHHhcCCHHHHHHHHhccCCC----Cc--chHHHHHHH
Q 004938 255 LQSTLITMYANCGCMDMA-KGLFDKVLL--KNLVV-STAMVSGYSRAGQVEDARLIFDQMVEK----DL--ICWSAMISG 324 (722)
Q Consensus 255 ~~~~li~~~~~~g~~~~A-~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~f~~~~~~----~~--~~~~~li~~ 324 (722)
+-.++.+++..+|--.+. .+....... .+-.- -.+.--|....|+.++++.+++..... +. ..-..+.-|
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 345667777777743322 111111111 11111 122333567789999999999887652 21 233444556
Q ss_pred HHhcCCchHHHHHHHHHHhCCC-------CCChhhHHHHHHHHHccCCc-hHHHHHHHHHHHcCCCCCh--hHHHHHHHH
Q 004938 325 YAENNHPQEALKLFNEMQVCGM-------KPDKVTMLSVISACAHLGVL-DQAQRIHLYIDKNAFGGDL--RVNNAIIDM 394 (722)
Q Consensus 325 ~~~~g~~~~A~~~~~~m~~~g~-------~p~~~t~~~ll~~~~~~g~~-~~a~~i~~~~~~~~~~~~~--~~~~~li~~ 394 (722)
....|..++++.++...+...- .+....-..+.-+.+-.|.- +++...+..++...- +.. ...-+|.-.
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli 499 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLC 499 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhh
Confidence 7777877788888877665321 01111112222223333322 344455555444221 111 111233444
Q ss_pred HHhcCCHHHHHHHHHhcCC-CChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHH---HHHHHHHhcCCH
Q 004938 395 YAKCGSLESAREVFERMRR-RNVI--SWTSMINAFAIHGDARNALIFFNKMKDESIDPNGV-TFI---GVLYACSHAGLV 467 (722)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~-~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~---~ll~a~~~~g~~ 467 (722)
|.-.|+-+....++..+.+ .+.. -.-++.-++...|+.+.+..+.+.+... +|.. -|. .+.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCH
Confidence 5566777777777776543 2222 2233334455788998888888888763 3332 333 334467788998
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCC-HHHHHHHHHH
Q 004938 468 DEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETMPFAPNVVIWG--SLMAACRVHGE-IELAEFAAKQ 544 (722)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~--~ll~~~~~~g~-~~~a~~~~~~ 544 (722)
....+++..+..+ ...++.-...+.-++...|+.+.+.++++.+....|..+-. .+.-+....|+ ..++...+.+
T Consensus 577 ~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 8888899888763 22223323333333334566555666665542222333222 22222222322 2566667776
Q ss_pred HH
Q 004938 545 LL 546 (722)
Q Consensus 545 ~~ 546 (722)
+.
T Consensus 655 L~ 656 (963)
T 4ady_A 655 LT 656 (963)
T ss_dssp HH
T ss_pred Hc
Confidence 65
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.65 E-value=24 Score=34.22 Aligned_cols=130 Identities=9% Similarity=0.070 Sum_probs=80.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCCHhHHHHHHHHHHc
Q 004938 155 QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNL----FEEMKMSNVEPDEMVLSKILSACSR 230 (722)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 230 (722)
+.++..-|.+.+++++|+.++.. -...+.+.|+...|-++ ++...+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34556667788999999988743 24456677887766664 4555667888998888888877765
Q ss_pred cC--Ch---HHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHH
Q 004938 231 AG--NL---SYGEAVHEFIIDNN--VALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYS 295 (722)
Q Consensus 231 ~g--~~---~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 295 (722)
.. .. .-......+-.+.| ...|+.....+...|.+.|++.+|+..|-.-...+...+..++.-+.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 33 21 22223333333333 23477788888888888888888888764222223444444444333
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.50 E-value=26 Score=34.34 Aligned_cols=110 Identities=14% Similarity=0.084 Sum_probs=71.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCCHhHHHHHHHHHHcc
Q 004938 156 TGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLF----EEMKMSNVEPDEMVLSKILSACSRA 231 (722)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~ 231 (722)
.++..-|.+.+++++|++++-. -...+.+.|+...|-++- +-..+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3455567888999999988733 244566777776665554 4456678889988888888877665
Q ss_pred CChH-HHHHHHHHH----HHcC--CCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 004938 232 GNLS-YGEAVHEFI----IDNN--VALDAHLQSTLITMYANCGCMDMAKGLF 276 (722)
Q Consensus 232 g~~~-~a~~~~~~~----~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 276 (722)
..-+ .=..+.+.+ .+.| ..-|+.....+...|.+.+++.+|+..|
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4321 112233333 3333 3446777777888888888888887776
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.88 E-value=7.6 Score=30.02 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=58.1
Q ss_pred CchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 365 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
..++|..|-+.+...+. ...+--.=+..+...|++++|..+.+.+.-||...|-++... +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45666666666655442 222222223456788999999999999999999999888654 66888888877777766
Q ss_pred cCCCCCHHHHH
Q 004938 445 ESIDPNGVTFI 455 (722)
Q Consensus 445 ~g~~p~~~t~~ 455 (722)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45444443
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.86 E-value=23 Score=35.83 Aligned_cols=56 Identities=13% Similarity=0.011 Sum_probs=24.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHh
Q 004938 457 VLYACSHAGLVDEGREIFASMTNEYNIPPK----YEHYGCMVDLFGRANLLREALELVET 512 (722)
Q Consensus 457 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 512 (722)
+...+...|++.+|..++..+.+...-..| .++|..-+.+|...|++.++...+.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344444555555555555444442111111 12333444444555555555544443
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.47 E-value=40 Score=34.78 Aligned_cols=31 Identities=6% Similarity=0.242 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHHhc--CCHHHHHHHHHhcCC
Q 004938 383 GDLRVNNAIIDMYAKC--GSLESAREVFERMRR 413 (722)
Q Consensus 383 ~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~ 413 (722)
++...+..|+.+|... .+++.+.+.|.....
T Consensus 291 ~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 291 KKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred cccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 4566777788888764 456777777766554
No 249
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.00 E-value=7.1 Score=30.14 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=59.0
Q ss_pred CchHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 365 VLDQAQRIHLYIDKNAFGGDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 365 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
..++|..|-+.+...+. ...+--.=+..+...|++++|..+.+.+.-||...|-++.. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666655442 22222222345678899999999999999999999988865 477888888888878777
Q ss_pred cCCCCCHHHHH
Q 004938 445 ESIDPNGVTFI 455 (722)
Q Consensus 445 ~g~~p~~~t~~ 455 (722)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 55544443
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.96 E-value=10 Score=29.32 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=35.1
Q ss_pred HHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhH
Q 004938 294 YSRAGQVEDARLIFDQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTM 353 (722)
Q Consensus 294 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 353 (722)
+...|++++|..+.+.+.-||...|-+|.. .+.|..+++...+.++..+| .|....|
T Consensus 50 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 445556666666677777777777766644 35566677777776666665 4444444
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.25 E-value=5 Score=34.67 Aligned_cols=26 Identities=8% Similarity=0.208 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC
Q 004938 489 HYGCMVDLFGRANLLREALELVETMP 514 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~~ 514 (722)
.---+...|.+.|++++|+.+++.+|
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 33345556666666666666666664
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.17 E-value=6.5 Score=30.58 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 431 DARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 431 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
+.-+..+-++.+....+.|+.....+.+.||.+.+++.-|.++|+.++.+. .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 344666777777777889999999999999999999999999999988753 334556777654
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.03 E-value=4 Score=33.75 Aligned_cols=69 Identities=10% Similarity=0.046 Sum_probs=37.9
Q ss_pred CCcchHHHHHHHHHhcCCHH---HHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 485 PKYEHYGCMVDLFGRANLLR---EALELVETM-PFAPN--VVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 485 ~~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
|+..+--.+..++.+....+ +++.++++. ...|. ...+--|.-|+.+.|++++|.+..+.+++.+|++.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 44444445555555555433 355555544 22231 23444455566667777777777777777777664
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.96 E-value=5.4 Score=34.45 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=58.3
Q ss_pred CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCc-------chHHHHHHHHHhcCCHHHHHHHHHhC---
Q 004938 446 SIDPNGV--TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKY-------EHYGCMVDLFGRANLLREALELVETM--- 513 (722)
Q Consensus 446 g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~--- 513 (722)
|+.|... ++..-+..+...|.++.|+-+.+.+..-.+..|+. .++..+.+++...|++..|...|++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4445432 34445566667777777776666655422223332 24455566666666666666666553
Q ss_pred ----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHH
Q 004938 514 ----PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 514 ----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
...|+. ..++ . ...... .-..+ +.+...-+.++..|.+.|++++|..+++.+
T Consensus 93 ~k~l~k~~s~--~~~~-~---~~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKV--RPST-G---NSASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCc--cccc-c---ccCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111111 0000 0 000000 00011 222345667999999999999999998754
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.07 E-value=6.9 Score=30.45 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 004938 99 KHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160 (722)
Q Consensus 99 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 160 (722)
-+..+-++.+....+.|++....+.|++|.|.+++..|.++++-+...- .+...+|..++.
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3566667777777788888888888999999999999988888775542 333455666554
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.59 E-value=15 Score=28.45 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=60.2
Q ss_pred CChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 004938 131 EGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMK 210 (722)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 210 (722)
...++|..+-+.+...+- ...+--.-+..+...|++++|..+.+.+..||+.+|-+|-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 355677777776666542 33333333456678899999999999999999999988865 46788888887777777
Q ss_pred HCCCCCCHhHH
Q 004938 211 MSNVEPDEMVL 221 (722)
Q Consensus 211 ~~g~~p~~~t~ 221 (722)
.+| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 3443333
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.04 E-value=4.1 Score=41.51 Aligned_cols=67 Identities=16% Similarity=0.040 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHh-----CCCccCC
Q 004938 522 WGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKE-----RGILKER 588 (722)
Q Consensus 522 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~ 588 (722)
...++.++...|+.+++...++.++..+|-+...+..+..+|...|+..+|.+.|+...+ .|+.|.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 445667778889999999999999999998888889999999999999999988888753 4766554
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.56 E-value=26 Score=29.39 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCch
Q 004938 521 IWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGA 555 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 555 (722)
..--|.-++.+.|++++|++..+.+++.+|++..+
T Consensus 79 cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 79 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 33456668999999999999999999999998643
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=77.68 E-value=15 Score=30.27 Aligned_cols=73 Identities=11% Similarity=-0.021 Sum_probs=47.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 004938 446 SIDPNGVTFIGVLYACSHAGL---VDEGREIFASMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM-PFAPNV 519 (722)
Q Consensus 446 g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 519 (722)
+-.|+..|-..+..++.++.. ..+|+.+++.+.+. +-.-..+..--|.-++.|.|++++|++..+.+ ..+|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 335566665555566666554 45688888887763 21112445556677788889999998888887 667764
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.91 E-value=9.5 Score=35.92 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=33.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 004938 425 AFAIHGDARNALIFFNKMKDESIDP-NGVTFIGVLYACSHAGLVDEGREIFASMTN 479 (722)
Q Consensus 425 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 479 (722)
...+.|+.++|++....-++. .| |...-..++.-+|-.|+++.|..-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345567777777777666664 34 334445556666777777777777766654
No 261
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=76.90 E-value=13 Score=37.63 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh----hcCCCCCcc
Q 004938 420 TSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTN----EYNIPPKYE 488 (722)
Q Consensus 420 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~~~~~ 488 (722)
..++..+...|++++|+..+..+... -+-+...+..++.++...|+..+|.+.|+...+ +.|+.|+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34555666777777777777776653 233555677777777777777777777766543 345666544
No 262
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=76.86 E-value=67 Score=35.51 Aligned_cols=55 Identities=7% Similarity=-0.133 Sum_probs=42.9
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 004938 225 LSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVL 280 (722)
Q Consensus 225 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 280 (722)
...|...|+++.|..+-++.+..- +.+-.+|..|...|.+.|+++.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344566788888888888888763 4467788888888888888888888887775
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.93 E-value=1.3e+02 Score=35.28 Aligned_cols=84 Identities=7% Similarity=0.005 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHhcccCC--chHHHHHHH
Q 004938 219 MVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDA----HLQSTLITMYANCGCMDMAKGLFDKVLLKN--LVVSTAMVS 292 (722)
Q Consensus 219 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~ 292 (722)
.-|..++..+.+.+.++.+.++-..+++.....+. ..|..+.+.+...|++++|...+-.++... ......++.
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~ 979 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34677788888888888888887777765332222 257788889999999999988887775442 345566777
Q ss_pred HHHhcCCHHH
Q 004938 293 GYSRAGQVED 302 (722)
Q Consensus 293 ~~~~~g~~~~ 302 (722)
..|..|..+.
T Consensus 980 ~lce~~~~~~ 989 (1139)
T 4fhn_B 980 QLTKQGKINQ 989 (1139)
T ss_dssp HHHHHCCHHH
T ss_pred HHHhCCChhh
Confidence 7777766554
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.03 E-value=13 Score=30.56 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 004938 432 ARNALIFFNKMKDESIDPNGVTFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYEHYGCMVD 495 (722)
Q Consensus 432 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 495 (722)
.-+..+-++.+....+.|+.......+.+|.+.+++.-|.++|+.++.+ ..+....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 3355666667777778999999999999999999999999999998875 3444566777654
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.98 E-value=49 Score=29.56 Aligned_cols=96 Identities=10% Similarity=0.125 Sum_probs=68.1
Q ss_pred CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHc--cCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccCCc
Q 004938 515 FAPNV---VIWGSLMAACRVHGEIELAEFAAKQLLQ--LDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERA 589 (722)
Q Consensus 515 ~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 589 (722)
.+.|. ..|-..+..| ..++...+..+|+.+.. ++-..+..|...+..+...|++++|.++++.-.+++..|
T Consensus 73 YkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P--- 148 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP--- 148 (202)
T ss_dssp GTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS---
T ss_pred ccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---
Confidence 34554 3555555544 24457788889888875 456667788899999999999999999999988876543
Q ss_pred ccEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCcccCCc
Q 004938 590 CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIH 636 (722)
Q Consensus 590 ~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~pd~~ 636 (722)
...+.+...+....|.+.+++.|..
T Consensus 149 ----------------------~~rL~~~~~~F~~R~~~~~~~~~~~ 173 (202)
T 3esl_A 149 ----------------------YNRLLRSLSNYEDRLREMNIVENQN 173 (202)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred ----------------------HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 2345566667788888888854444
No 266
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.30 E-value=39 Score=39.89 Aligned_cols=59 Identities=5% Similarity=-0.206 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCc-----hHHHHHHHhhhCCCcchHHHHHHHHH
Q 004938 522 WGSLMAACRVHGEIELAEFAAKQLLQLDPDHDG-----ALVLLSNIYAKDKRWQDVGELRKSMK 580 (722)
Q Consensus 522 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~ 580 (722)
|..++..+.++|.++.+.+..+.+++..+.+.. .|..+-..+.+.|++++|...+-.+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 344444445555555555555555443322111 23334444445555555555544443
No 267
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=71.50 E-value=56 Score=29.16 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=7.5
Q ss_pred CHhHHHHHHHHHHhcCC
Q 004938 252 DAHLQSTLITMYANCGC 268 (722)
Q Consensus 252 ~~~~~~~li~~~~~~g~ 268 (722)
+..+....+.++.+.|+
T Consensus 94 ~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444444444444
No 268
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=70.67 E-value=1.2e+02 Score=32.68 Aligned_cols=391 Identities=10% Similarity=-0.012 Sum_probs=203.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCCh
Q 004938 155 QTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNL 234 (722)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 234 (722)
-+.-+..+.+.+++...+..+.. +..+...--....+....|+..+|......+-..|- ........++..+.+.|.+
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCC
Confidence 34556677778888888887766 322333334456667778888888877777655442 2233344444444443332
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhcccCCchHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 004938 235 SYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCMDMAKGLFDKVLLKNLVVSTAMVSGYSRAGQVEDARLIFDQMVEKD 314 (722)
Q Consensus 235 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 314 (722)
....++.- ++.....|+...|..+...+..........++..+.+-..+. ...... .++
T Consensus 153 ----------------t~~~~~~R-~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~---~~~~~~-~~~ 211 (618)
T 1qsa_A 153 ----------------DPLAYLER-IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVL---TFARTT-GAT 211 (618)
T ss_dssp ----------------CHHHHHHH-HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHH---HHHHHS-CCC
T ss_pred ----------------CHHHHHHH-HHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHH---HHHhcc-CCC
Confidence 22223322 355566777777777766653222222233333333322222 222221 111
Q ss_pred cc---hHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH----HccCCchHHHHHHHHHHHcCCCCChhH
Q 004938 315 LI---CWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISAC----AHLGVLDQAQRIHLYIDKNAFGGDLRV 387 (722)
Q Consensus 315 ~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~g~~~~a~~i~~~~~~~~~~~~~~~ 387 (722)
.. .+..-+.-+.+ .+.+.|..+|....... ..+......+-... ...+...++...+....... .+...
T Consensus 212 ~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 287 (618)
T 1qsa_A 212 DFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSL 287 (618)
T ss_dssp HHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHH
T ss_pred hhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHH
Confidence 11 11112233333 37789999998886543 22333322222222 33342445555555544332 33333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRRRN---VISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHA 464 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 464 (722)
..-.+....+.|+++.|...|+.|.... ....-=+..++...|+.++|..+|+++.. + .+|..++.+ .+.
T Consensus 288 ~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~--~~fYg~lAa-~~L 360 (618)
T 1qsa_A 288 IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----Q--RGFYPMVAA-QRI 360 (618)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----S--CSHHHHHHH-HHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----C--CChHHHHHH-HHc
Confidence 4444555567899999999999998632 22222244567788999999999999864 2 245444422 223
Q ss_pred CCHHHHHHHHHHhHhhcCCCCC-cc-----hHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004938 465 GLVDEGREIFASMTNEYNIPPK-YE-----HYGCMVDLFGRANLLREALELVETMPFAPNVVIWGSLMAACRVHGEIELA 538 (722)
Q Consensus 465 g~~~~a~~~~~~~~~~~~~~~~-~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 538 (722)
|.... . ......+. .. .-..-+..+.+.|...+|...+....-..+......+.......|..+.+
T Consensus 361 g~~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~ 432 (618)
T 1qsa_A 361 GEEYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLS 432 (618)
T ss_dssp TCCCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHH
Confidence 32100 0 00000110 11 11123456778899999988887762223444344455555678888888
Q ss_pred HHHHHHHHccCC---CCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCccC
Q 004938 539 EFAAKQLLQLDP---DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKE 587 (722)
Q Consensus 539 ~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 587 (722)
.....+....+. .-+..|..+..-+++.-.++...-.---..|.+..+.
T Consensus 433 v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 433 VQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp HHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 776654433220 1123445555555555555554433233345555543
No 269
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=70.58 E-value=90 Score=33.89 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=17.0
Q ss_pred HhcCCHHHHHHHHHhCCCCCC
Q 004938 498 GRANLLREALELVETMPFAPN 518 (722)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~p~ 518 (722)
...|++++|++.++++++-|.
T Consensus 549 ~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSCC
T ss_pred HHcCCHHHHHHHHHhCCCCCC
Confidence 678999999999998866663
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.79 E-value=16 Score=30.18 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 004938 100 HALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVG 160 (722)
Q Consensus 100 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 160 (722)
+..+-++.+....+.|++....+.|++|.+.+|+..|.++++-++.. ..+...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 46666777777888999999999999999999999999999887654 2444556766654
No 271
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.17 E-value=1.1e+02 Score=31.50 Aligned_cols=95 Identities=9% Similarity=0.043 Sum_probs=69.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc-CCCCC----cc
Q 004938 419 WTSMINAFAIHGDARNALIFFNKMKDE--SIDPN---GVTFIGVLYACSHAGLVDEGREIFASMTNEY-NIPPK----YE 488 (722)
Q Consensus 419 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~~~----~~ 488 (722)
...|...|...|++.+|..++.++... |..+. ...+...+..|...+++.+|..++.++.... ...+. ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456777888999999999999998653 32222 1356667788999999999999998875321 12222 24
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 489 HYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
.|.+++..+...+++.+|...|.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6778888889999999998887665
No 272
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=68.31 E-value=66 Score=28.68 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=25.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004938 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKD 444 (722)
Q Consensus 383 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 444 (722)
++..+-...+.++.+.|..+....+...+..++...-...+.++...+. .++...+.++..
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 3444444444444444443322223333333444444444444444443 234444444443
No 273
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=66.57 E-value=69 Score=28.26 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=23.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 384 DLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMK 443 (722)
Q Consensus 384 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 443 (722)
+..+-...+.++.+.|..+....+...+..++...-...+.++...|. .++...+.++.
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 344444444444444443322222333333444444444444444443 23334444433
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.92 E-value=67 Score=29.98 Aligned_cols=115 Identities=10% Similarity=0.006 Sum_probs=53.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHc
Q 004938 156 TGLVGMYGACGKILDARLMFDKMSYRDIV---PWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMV--LSKILSACSR 230 (722)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~ 230 (722)
++.+...++.|+++....+++.-...+.. .-.+.+...++.|+.+ +++.+.+.|..|+... -.+.+...+.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 44555667788888888887765443322 1123344445566653 3344444555443211 1122333334
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhH--HHHHHHHHHhcCChHHHHHHHHh
Q 004938 231 AGNLSYGEAVHEFIIDNNVALDAHL--QSTLITMYANCGCMDMAKGLFDK 278 (722)
Q Consensus 231 ~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 278 (722)
.|+.+ +.+.+++.|..++... ....+...+..|+.+-...+++.
T Consensus 82 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 82 AGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127 (285)
T ss_dssp HTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHh
Confidence 45544 3334444554433211 11223334455555555555444
No 275
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=65.51 E-value=88 Score=31.76 Aligned_cols=12 Identities=8% Similarity=0.163 Sum_probs=5.7
Q ss_pred CChHHHHHHhcc
Q 004938 65 SSLYYALSIFSQ 76 (722)
Q Consensus 65 g~~~~A~~~f~~ 76 (722)
|+++-...+++.
T Consensus 25 g~~~~v~~Ll~~ 36 (437)
T 1n11_A 25 GHLPIVKNLLQR 36 (437)
T ss_dssp TCHHHHHHHHHT
T ss_pred CCHHHHHHHHHc
Confidence 455544444443
No 276
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.32 E-value=9.1 Score=36.06 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=43.6
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCC
Q 004938 495 DLFGRANLLREALELVETM-PFAP-NVVIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHD 553 (722)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 553 (722)
..+.+.|.+++|++.+..- .-.| |...-..|+..++..|++++|..-++...+++|+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 3456788888888777654 3344 556666777888888888888888888888888754
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.77 E-value=40 Score=34.61 Aligned_cols=92 Identities=2% Similarity=-0.075 Sum_probs=52.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CCCc----hH
Q 004938 488 EHYGCMVDLFGRANLLREALELVETM-----PFAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQLDP--DHDG----AL 556 (722)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~~~----~~ 556 (722)
.....+.+.|.+.|++++|.+.+.++ +...-...+-..+..+...+|+..+...++++..+.. .++. ..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35556666777777777777777666 1122234556666667777777777777776654311 1111 11
Q ss_pred HHHHHHhhhCCCcchHHHHHHHH
Q 004938 557 VLLSNIYAKDKRWQDVGELRKSM 579 (722)
Q Consensus 557 ~~l~~~~~~~g~~~~a~~~~~~m 579 (722)
..-+.++...++|.+|.+.|-..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHH
Confidence 23344455667777777666554
No 278
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=61.76 E-value=62 Score=31.29 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=41.8
Q ss_pred hCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhC
Q 004938 512 TMPFAPNV--VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKER 582 (722)
Q Consensus 512 ~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 582 (722)
..+++|.. .++.+-++.+.+++|+..|..+.++++++.|... ..++|.++...-.+.
T Consensus 198 ~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 198 KAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp GSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 33566653 4677888889999999999999999999999532 234566666665544
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.00 E-value=73 Score=29.72 Aligned_cols=118 Identities=8% Similarity=-0.045 Sum_probs=57.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchh---hHHHHHHHHHhCCCHHHHHHHHhcCCCCCc---ccHHHHHHHHHh
Q 004938 122 PILKAIARAEGLLEGMQVHGLGTKLGFGSDPF---VQTGLVGMYGACGKILDARLMFDKMSYRDI---VPWSVMIDGYFQ 195 (722)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~ 195 (722)
+.+...++.|+++..+.+ ++.|..++.. ...+.+...+..|+.+-+..+++.-..++. .-++.| ...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF-LLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHH
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHH
Confidence 344555667776654444 4445443322 122345556677888877777775443322 223333 33344
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhHH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 004938 196 NGLFDEVLNLFEEMKMSNVEPDEMVL--SKILSACSRAGNLSYGEAVHEFIIDNNVALD 252 (722)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 252 (722)
.|+.+ +++.+.+.|..++.... .+.+...+..|+.+ +.+.+++.|..++
T Consensus 82 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~ 132 (285)
T 1wdy_A 82 AGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK----ALKFLYKRGANVN 132 (285)
T ss_dssp HTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred cCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHH----HHHHHHHhCCCcc
Confidence 55543 44445556655543211 12333444556654 3444455555443
No 280
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=60.34 E-value=74 Score=28.82 Aligned_cols=87 Identities=9% Similarity=-0.035 Sum_probs=43.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCccc--HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHh
Q 004938 89 IRAISWSHRPKHALKVFLKMLNEGLTIDRFS--FPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFV--QTGLVGMYGA 164 (722)
Q Consensus 89 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~ 164 (722)
+...++.|+.+....+++.+.+.|..++... -.+.+...+..|+.+ +.+.+++.|..++... ..+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3444566777666666666665555544321 112333344455554 3344445554433221 1223444456
Q ss_pred CCCHHHHHHHHhcCC
Q 004938 165 CGKILDARLMFDKMS 179 (722)
Q Consensus 165 ~g~~~~A~~~f~~m~ 179 (722)
.|+.+-...+++...
T Consensus 89 ~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 89 HRSPTCLRALLDSAA 103 (241)
T ss_dssp TTCHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHcCC
Confidence 677777777766543
No 281
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=55.30 E-value=2.3e+02 Score=30.70 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhC
Q 004938 154 VQTGLVGMYGACGKILDARLMFDKMSY---RDIVPWSVMIDGYFQN 196 (722)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 196 (722)
+| ++|-.+.|||++++|.++.++... .-...+...+..|+..
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 44 467778899999999998877642 1124566777777643
No 282
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=54.77 E-value=1.1e+02 Score=26.82 Aligned_cols=85 Identities=12% Similarity=0.058 Sum_probs=37.3
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCchHHHHHHHHHHHcCCCCChhH
Q 004938 308 DQMVEKDLICWSAMISGYAENNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGVLDQAQRIHLYIDKNAFGGDLRV 387 (722)
Q Consensus 308 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~ 387 (722)
..+..++...-...+.++.+.+..+ +...+..+.. .++...-...+.++.+.++.+. ...+..+.+ .++..+
T Consensus 83 ~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~v 154 (201)
T 3ltj_A 83 KALKDEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERA-VEPLIKALK---DEDGWV 154 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGGG-HHHHHHHTT---CSSHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHc---CCCHHH
Confidence 3333444444444445555555432 3333333332 3444444455555555554332 222222222 244455
Q ss_pred HHHHHHHHHhcCC
Q 004938 388 NNAIIDMYAKCGS 400 (722)
Q Consensus 388 ~~~li~~~~~~g~ 400 (722)
-...+.++.+.|.
T Consensus 155 r~~A~~aL~~~~~ 167 (201)
T 3ltj_A 155 RQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhCc
Confidence 5555555555554
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.60 E-value=62 Score=27.46 Aligned_cols=77 Identities=3% Similarity=-0.136 Sum_probs=50.7
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCCchHHHHHHHhhhCCCcchHHHHHH
Q 004938 504 REALELVETM-PFAPNVV---IWGSLMAACRVHGEIELAEFAAKQLLQL--DPDHDGALVLLSNIYAKDKRWQDVGELRK 577 (722)
Q Consensus 504 ~~A~~~~~~~-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 577 (722)
+.+...|..- ..+.|.. .|-..+..| +.+..+|+.+... +-..+..|...+..+...|++++|.++++
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555444 3445553 444433332 2377788887754 45566778889999999999999999999
Q ss_pred HHHhCCCcc
Q 004938 578 SMKERGILK 586 (722)
Q Consensus 578 ~m~~~g~~~ 586 (722)
.-.+++..|
T Consensus 126 ~Gi~~~A~P 134 (152)
T 4a1g_A 126 RGIQNQAEP 134 (152)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCcc
Confidence 888776543
No 284
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=54.35 E-value=1.8e+02 Score=29.18 Aligned_cols=289 Identities=13% Similarity=0.083 Sum_probs=133.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccC--------CchHHHHHHHHHHhcC-CHHHHHHHHhccCC---CCcchH-----
Q 004938 256 QSTLITMYANCGCMDMAKGLFDKVLLK--------NLVVSTAMVSGYSRAG-QVEDARLIFDQMVE---KDLICW----- 318 (722)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g-~~~~A~~~f~~~~~---~~~~~~----- 318 (722)
...|...|.+.|+.++..+++.....- ....-..++..+.... ..+.-.++..+..+ .+-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777776555221 1223344555554432 22222222222211 111233
Q ss_pred -HHHHHHHHhcCCchHHHHHHHHHHhCCCCCChh-----hHHHHHHHHHccCCchHHHHHHHHHHHc--CCCCChhHHHH
Q 004938 319 -SAMISGYAENNHPQEALKLFNEMQVCGMKPDKV-----TMLSVISACAHLGVLDQAQRIHLYIDKN--AFGGDLRVNNA 390 (722)
Q Consensus 319 -~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~~~~~~g~~~~a~~i~~~~~~~--~~~~~~~~~~~ 390 (722)
.-++..|...|++.+|++++.++.+.=-+.|.. .+..-+..|...+++.+++..+...... .+.+++.+...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 246778888888888888888876532122222 2333444556667777776666655432 12122222111
Q ss_pred H----HHHHH-hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004938 391 I----IDMYA-KCGSLESAREVFERMRRRNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNGVTFIGVLYACSHAG 465 (722)
Q Consensus 391 l----i~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 465 (722)
+ .-++. ..+++..|...|-+.. .+|-..|.+ .+. +...|..+. +.....
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf-----------~~f~~~~~~-~~~-------------~~lkYlvL~-aLl~~~ 235 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF-----------EGFDSVDSV-KAL-------------TSLKYMLLC-KIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH-----------HHHTTTCHH-HHH-------------HHHHHHHHH-HHHTTC
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH-----------hcccccccH-HHH-------------HHHHHHHHH-HHHcCC
Confidence 1 11223 3455555544443310 111111110 000 111232222 222212
Q ss_pred CHHHHHHHHH-HhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHH---HHHHHHHHHHcCCHHHHH
Q 004938 466 LVDEGREIFA-SMTNEYNIPPKYEHYGCMVDLFGRANLLREALELVETM--PFAPNVVI---WGSLMAACRVHGEIELAE 539 (722)
Q Consensus 466 ~~~~a~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~---~~~ll~~~~~~g~~~~a~ 539 (722)
..+-..++. .....+ ..|....+..++.+| +.+++.+..++++.. .+..|... |..|....+ .
T Consensus 236 -r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~ 304 (394)
T 3txn_A 236 -SDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------E 304 (394)
T ss_dssp -GGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------H
T ss_pred -HHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------H
Confidence 112112221 111112 234444455555543 456777777777765 24456543 222322222 2
Q ss_pred HHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCCCc
Q 004938 540 FAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGIL 585 (722)
Q Consensus 540 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 585 (722)
..+.++. .|-....+..++....- ..++++...-+|...|.-
T Consensus 305 ~~L~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 305 QNLCRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 2333333 45555666677766543 577899999999887754
No 285
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.05 E-value=98 Score=31.63 Aligned_cols=57 Identities=9% Similarity=0.035 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004938 387 VNNAIIDMYAKCGSLESAREVFERMRR------RNVISWTSMINAFAIHGDARNALIFFNKMK 443 (722)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 443 (722)
+...+.+.|.++|+++.|.+.|.++.. .-+..+-.++..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445566666666666666666666542 122344455555555566665555555543
No 286
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=51.95 E-value=29 Score=32.39 Aligned_cols=92 Identities=12% Similarity=-0.034 Sum_probs=49.1
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcc-------cHHHHHHHHH--hcCChHHHHHHHHHHHHhC---------CCC
Q 004938 89 IRAISWSHRPKHALKVFLKMLNEGLTIDRF-------SFPPILKAIA--RAEGLLEGMQVHGLGTKLG---------FGS 150 (722)
Q Consensus 89 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~ 150 (722)
+...++.|+.+....+++.+.+.|..++.. -.+.+..+.. +.|+.+-+..+++.-...+ +..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 344556788887777777777766665533 2344444432 4566666666665433211 100
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHhcCCC
Q 004938 151 DPFVQTGLVGMYGACGKILDARLMFDKMSY 180 (722)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 180 (722)
......+.+...+..|+.+-+..+++.-..
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 000112234444566777777777765443
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.77 E-value=75 Score=27.33 Aligned_cols=76 Identities=11% Similarity=0.134 Sum_probs=50.4
Q ss_pred HHHHHHHhC-CCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHc--cCCCCCchHHHHHHHhhhCCCcchHHHHHHH
Q 004938 505 EALELVETM-PFAPNVV---IWGSLMAACRVHGEIELAEFAAKQLLQ--LDPDHDGALVLLSNIYAKDKRWQDVGELRKS 578 (722)
Q Consensus 505 ~A~~~~~~~-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 578 (722)
.+...|..- ..+.|.. .|-.++..| ++ ...+|+.+.. ++-..+..|...+..+...|++.+|.++++.
T Consensus 48 rc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~ 121 (164)
T 2wvi_A 48 RAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQE 121 (164)
T ss_dssp HHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444333 3445653 454444443 33 5667777765 4556677888999999999999999999998
Q ss_pred HHhCCCcc
Q 004938 579 MKERGILK 586 (722)
Q Consensus 579 m~~~g~~~ 586 (722)
-.+.+..|
T Consensus 122 Gi~~~A~P 129 (164)
T 2wvi_A 122 GIQQKAEP 129 (164)
T ss_dssp HHHTTCBS
T ss_pred HHHcCCCc
Confidence 88876543
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=51.54 E-value=95 Score=29.34 Aligned_cols=20 Identities=0% Similarity=-0.102 Sum_probs=9.9
Q ss_pred HHHHHHhCCCHHHHHHHHhc
Q 004938 158 LVGMYGACGKILDARLMFDK 177 (722)
Q Consensus 158 li~~~~~~g~~~~A~~~f~~ 177 (722)
.+...+..|+.+-+..+++.
T Consensus 65 ~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 65 PLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 33344455555555555543
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.80 E-value=95 Score=29.98 Aligned_cols=57 Identities=9% Similarity=0.092 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCCccc--HHHHHHHHHhCCCh--hHHHHHHHHHHH
Q 004938 155 QTGLVGMYGACGKILDARLMFDKMSYRDIVP--WSVMIDGYFQNGLF--DEVLNLFEEMKM 211 (722)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~--~~A~~~~~~m~~ 211 (722)
...++.-|...|+.++|...++++..|.... -..+|......++. +.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4578888888999999999999998765222 22333333333322 344456666653
No 290
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=47.93 E-value=94 Score=27.50 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCCCCH--HHH-----HHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhh
Q 004938 503 LREALELVETMPFAPNV--VIW-----GSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYA 564 (722)
Q Consensus 503 ~~~A~~~~~~~~~~p~~--~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 564 (722)
++.|+.+|+.++..-|. ..- -..+..|.+.|.+++|.+++++..+..|.+...-..|..+-.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~ 162 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIIS 162 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 56788888888433331 111 223456999999999999999999888776655555554433
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.82 E-value=84 Score=28.43 Aligned_cols=84 Identities=10% Similarity=-0.080 Sum_probs=45.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhCCCHHHHHHHHhcCCCCCcc---cHHHHHHHHHhCCC
Q 004938 124 LKAIARAEGLLEGMQVHGLGTKLGFGSDPFV--QTGLVGMYGACGKILDARLMFDKMSYRDIV---PWSVMIDGYFQNGL 198 (722)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~ 198 (722)
|...++.|+.+....+++.+.+.|..++... ..+.+...+..|+.+-+..+++.-..++.. .++. +...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCC
Confidence 3445566888877777777666665443321 223444555677777777776644333222 2222 333445666
Q ss_pred hhHHHHHHHH
Q 004938 199 FDEVLNLFEE 208 (722)
Q Consensus 199 ~~~A~~~~~~ 208 (722)
.+-+..+++.
T Consensus 92 ~~~~~~Ll~~ 101 (241)
T 1k1a_A 92 PTCLRALLDS 101 (241)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6555444444
No 292
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.04 E-value=1.3e+02 Score=26.21 Aligned_cols=47 Identities=6% Similarity=0.077 Sum_probs=22.0
Q ss_pred CChHHHHHHhccCC-C---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 004938 65 SSLYYALSIFSQIP-A---PPSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTID 116 (722)
Q Consensus 65 g~~~~A~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 116 (722)
|+.+....++..-. . +|...++.|. ..++.|+. ++++.+.+.|..++
T Consensus 16 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~----~~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 16 RDTKKVKEILQDTTYQVDEVDTEGNTPLN-IAVHNNDI----EIAKALIDRGADIN 66 (201)
T ss_dssp TCHHHHHHHHTCTTCCTTCCCTTSCCHHH-HHHHHTCH----HHHHHHHHTTCCTT
T ss_pred ccHHHHHHHHHcCCCCCCCCCCCCCCHHH-HHHHcCCH----HHHHHHHHcCCCCC
Confidence 66777666665443 2 2222233333 33344543 34444445555554
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.00 E-value=83 Score=28.32 Aligned_cols=105 Identities=10% Similarity=0.000 Sum_probs=48.0
Q ss_pred CChHHHHHHhccCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCccc---HHHHHHHHHhcCChHHHHH
Q 004938 65 SSLYYALSIFSQIPAP---PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFS---FPPILKAIARAEGLLEGMQ 138 (722)
Q Consensus 65 g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~~~a~~ 138 (722)
|+++....+++.-..+ +...+ +.+...++.|+.+ +++.+.+.|..++... -.+.+...+..++.+-
T Consensus 20 g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~--- 91 (240)
T 3eu9_A 20 GIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSM--- 91 (240)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHH---
T ss_pred CChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHH---
Confidence 6777776666543222 22212 3344455566553 3444444554443221 1123333444555443
Q ss_pred HHHHHHHhCCCCchhh--HHHHHHHHHhCCCHHHHHHHHhcC
Q 004938 139 VHGLGTKLGFGSDPFV--QTGLVGMYGACGKILDARLMFDKM 178 (722)
Q Consensus 139 ~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m 178 (722)
.+.+++.|..++... ..+.+...+..|+.+-+..+++.-
T Consensus 92 -v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~ 132 (240)
T 3eu9_A 92 -VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132 (240)
T ss_dssp -HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred -HHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcC
Confidence 334444554443211 112334445567776666666543
No 294
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=44.14 E-value=42 Score=31.20 Aligned_cols=53 Identities=11% Similarity=0.002 Sum_probs=26.3
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHhH-------HHHHHHHHH--ccCChHHHHHHHHHH
Q 004938 192 GYFQNGLFDEVLNLFEEMKMSNVEPDEMV-------LSKILSACS--RAGNLSYGEAVHEFI 244 (722)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~g~~~~a~~~~~~~ 244 (722)
..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+.++.+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34455666666666665555554444322 122332321 456666665555543
No 295
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=42.17 E-value=8.4 Score=23.83 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=11.9
Q ss_pred CCccccc-cCCccCCCCC
Q 004938 705 RTRFHHY-KDGVCSCKDY 721 (722)
Q Consensus 705 ~~~~h~~-~~g~csc~~~ 721 (722)
|-.-|.. ++|.|||+-|
T Consensus 12 CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 12 CPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp CCTTSCCCTTSSBTTTTB
T ss_pred CCCCceecCCceeccccc
Confidence 4444554 6899999976
No 296
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.75 E-value=1.4e+02 Score=25.96 Aligned_cols=176 Identities=11% Similarity=0.066 Sum_probs=80.5
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhC
Q 004938 91 AISWSHRPKHALKVFLKMLNEGLTI---DRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFV--QTGLVGMYGAC 165 (722)
Q Consensus 91 ~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~ 165 (722)
..+..|+.+....++..- +..+ |..-.+.+. ..++.|+.+ +.+.+++.|..++... ..+.+...+..
T Consensus 11 ~A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDT---TYQVDEVDTEGNTPLN-IAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp HHHHTTCHHHHHHHHTCT---TCCTTCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHcC---CCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 345667776666655432 1122 222233333 344556654 4444555665554322 12334455677
Q ss_pred CCHHHHHHHHhcCC-C---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHH
Q 004938 166 GKILDARLMFDKMS-Y---RDIVPWSVMIDGYFQNGLFDEVLNLFEEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVH 241 (722)
Q Consensus 166 g~~~~A~~~f~~m~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 241 (722)
|+.+-+..+++.-. . +|...++. +...++.|+.+-+..+++.-...--..|..-.+.+..++........-.++.
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 88888888885432 2 22222232 3334556766544444433200000112222233333333322233335667
Q ss_pred HHHHHcCCCCCHhHH--HHHHHHHHhcCChHHHHHH
Q 004938 242 EFIIDNNVALDAHLQ--STLITMYANCGCMDMAKGL 275 (722)
Q Consensus 242 ~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~ 275 (722)
+.+++.|..++.... .+-+....+.|+.+-+.-+
T Consensus 162 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 197 (201)
T 3hra_A 162 KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197 (201)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence 777777766553221 1233444455555544443
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.56 E-value=1.3e+02 Score=24.50 Aligned_cols=64 Identities=9% Similarity=0.228 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRRRNV---ISWTSMINAFAIHGD--ARNALIFFNKMKDESIDPNG 451 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 451 (722)
.+.++.-|...|+.++|.+.++++..|.. ....++..++-+.++ .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 35677778888889999888888876532 344445555554432 35667777777776654443
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.61 E-value=1.9e+02 Score=25.78 Aligned_cols=20 Identities=10% Similarity=0.058 Sum_probs=9.7
Q ss_pred HHHHHhcCCHHHHHHHHHhc
Q 004938 392 IDMYAKCGSLESAREVFERM 411 (722)
Q Consensus 392 i~~~~~~g~~~~A~~~~~~~ 411 (722)
+....+.|+.+-+..+++..
T Consensus 214 l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHHhh
Confidence 33344555555555554443
No 299
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=36.37 E-value=2.3e+02 Score=25.21 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhcccC
Q 004938 234 LSYGEAVHEFIIDNNVAL-DAHLQSTLITMYANCGCMDMAKGLFDKVLLK 282 (722)
Q Consensus 234 ~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 282 (722)
......+|..|...|+-. -...|......+-..|++.+|.++|+..++.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 334445555554444422 2334444455555555555555554444333
No 300
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=36.19 E-value=1.2e+02 Score=27.22 Aligned_cols=13 Identities=8% Similarity=0.110 Sum_probs=5.2
Q ss_pred HhCCCchHHHHHH
Q 004938 93 SWSHRPKHALKVF 105 (722)
Q Consensus 93 ~~~g~~~~a~~~~ 105 (722)
++.|+.+....++
T Consensus 14 ~~~g~~~~v~~ll 26 (231)
T 3aji_A 14 AYSGKLDELKERI 26 (231)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHH
Confidence 3344444433333
No 301
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=36.14 E-value=1.1e+02 Score=29.92 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=6.2
Q ss_pred hCCCHHHHHHHHhc
Q 004938 164 ACGKILDARLMFDK 177 (722)
Q Consensus 164 ~~g~~~~A~~~f~~ 177 (722)
..|+.+-+..+++.
T Consensus 62 ~~g~~~~v~~Ll~~ 75 (364)
T 3ljn_A 62 KFGCVDTAKYLASV 75 (364)
T ss_dssp HHCCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHC
Confidence 34444444444443
No 302
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.99 E-value=1.5e+02 Score=26.32 Aligned_cols=49 Identities=12% Similarity=0.230 Sum_probs=35.1
Q ss_pred chHHHHHHHHHh---cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 004938 316 ICWSAMISGYAE---NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLGV 365 (722)
Q Consensus 316 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 365 (722)
....-+|+++.+ -.+.+.|+-++-+|++.| .|....-..++.+....|.
T Consensus 12 d~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 12 DAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 344456777654 478999999999999999 7766666666666655553
No 303
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=35.86 E-value=52 Score=25.38 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=19.6
Q ss_pred CHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 004938 299 QVEDARLIFDQMVEKDLICWSAMISGYAENNHPQ 332 (722)
Q Consensus 299 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 332 (722)
+.+.|.++++.++.+...+|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 4555555566666666666666666665545443
No 304
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.50 E-value=1.7e+02 Score=27.42 Aligned_cols=101 Identities=12% Similarity=-0.018 Sum_probs=41.5
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhCCCHH
Q 004938 92 ISWSHRPKHALKVFLKMLNEGLTIDRFSFPPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFV--QTGLVGMYGACGKIL 169 (722)
Q Consensus 92 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~ 169 (722)
.++.|+.+-+ +.+.+.|..++...-.+.+...+..|+.+-... +++.|..++... ..+.+...+..|+.+
T Consensus 38 A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~ 109 (285)
T 3kea_A 38 AIADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTALYYAVDSGNMQ 109 (285)
T ss_dssp HHHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 3445554433 333334444333222233444445555543333 334454333211 112233344556666
Q ss_pred HHHHHHhcCCC---CCcccHHHHHHHHHhCCChh
Q 004938 170 DARLMFDKMSY---RDIVPWSVMIDGYFQNGLFD 200 (722)
Q Consensus 170 ~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 200 (722)
-+..+++.-.. ++..-|.+.+...+..|+.+
T Consensus 110 ~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~ 143 (285)
T 3kea_A 110 TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS 143 (285)
T ss_dssp HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH
T ss_pred HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH
Confidence 66655554222 22222333444444555543
No 305
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.32 E-value=90 Score=25.54 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=10.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhc
Q 004938 258 TLITMYANCGCMDMAKGLFDKV 279 (722)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~~ 279 (722)
.++.=|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444455555555554444
No 306
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.70 E-value=2e+02 Score=24.25 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=26.7
Q ss_pred HHHHHhcCCCCCccc-----HHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 004938 171 ARLMFDKMSYRDIVP-----WSVMIDGYFQNGLFDEVLNLFEEMKMSNVEP 216 (722)
Q Consensus 171 A~~~f~~m~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 216 (722)
+..+|..|...++-+ |......+-..|++.+|.++|+.-.+.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 555555555444333 5555555666666666666666666655555
No 307
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=34.31 E-value=1.3e+02 Score=27.94 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=8.3
Q ss_pred HHhcCChHHHHHHHHh
Q 004938 263 YANCGCMDMAKGLFDK 278 (722)
Q Consensus 263 ~~~~g~~~~A~~~~~~ 278 (722)
.+..|+.+-+..+++.
T Consensus 108 A~~~g~~~~v~~Ll~~ 123 (273)
T 2pnn_A 108 AIERRNMTLVTLLVEN 123 (273)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHC
Confidence 3445555555555544
No 308
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=33.64 E-value=2e+02 Score=26.94 Aligned_cols=88 Identities=9% Similarity=-0.017 Sum_probs=38.2
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccH--HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh---hH
Q 004938 81 PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF--PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPF---VQ 155 (722)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~ 155 (722)
|..-++.| ...+..|+.+ +++.+.+.|..++.... .+.|...+..|+.+-+. .+++.|..++.. -.
T Consensus 56 ~~~g~t~L-~~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~~~~g~ 126 (285)
T 3d9h_A 56 AVSDWSPM-HEAAIHGHQL----SLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVK----ILLKHGAQVNGVTADWH 126 (285)
T ss_dssp SCCSCCHH-HHHHHTTCHH----HHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHH----HHHHTTCCSSCCCTTCC
T ss_pred CccCCCHH-HHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHH----HHHHCCCCCCCCCCCCC
Confidence 33334443 3344566653 34444455655543221 12233334455554333 334445433321 12
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcC
Q 004938 156 TGLVGMYGACGKILDARLMFDKM 178 (722)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~f~~m 178 (722)
+. +...+..|..+-+..+++.-
T Consensus 127 t~-L~~A~~~~~~~~v~~Ll~~g 148 (285)
T 3d9h_A 127 TP-LFNACVSGSWDCVNLLLQHG 148 (285)
T ss_dssp CH-HHHHHHHTCHHHHHHHHHTT
T ss_pred CH-HHHHHHcCHHHHHHHHHHCC
Confidence 22 23334456666666665543
No 309
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=32.81 E-value=1.7e+02 Score=26.31 Aligned_cols=14 Identities=7% Similarity=0.121 Sum_probs=6.5
Q ss_pred HhCCCHHHHHHHHh
Q 004938 163 GACGKILDARLMFD 176 (722)
Q Consensus 163 ~~~g~~~~A~~~f~ 176 (722)
+..|+.+-+..+++
T Consensus 85 ~~~~~~~~~~~Ll~ 98 (237)
T 3b7b_A 85 AKKGHYEVVQYLLS 98 (237)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHcCCHHHHHHHHh
Confidence 34455444444444
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.69 E-value=1.3e+02 Score=25.49 Aligned_cols=64 Identities=9% Similarity=0.218 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCH
Q 004938 388 NNAIIDMYAKCGSLESAREVFERMRRRN---VISWTSMINAFAIHGD--ARNALIFFNKMKDESIDPNG 451 (722)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 451 (722)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3567777888888888888888887653 2344445555544332 34566777777766654443
No 311
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.60 E-value=1.7e+02 Score=26.97 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHH
Q 004938 87 KFIRAISWSHRPKHALKVFLKMLN 110 (722)
Q Consensus 87 ~li~~~~~~g~~~~a~~~~~~m~~ 110 (722)
--++.+....++++|.+++++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 357788889999999999987653
No 312
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.60 E-value=2.5e+02 Score=27.42 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccC
Q 004938 257 STLITMYANCGCMDMAKGLFDKVLLK 282 (722)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~~~ 282 (722)
..++.=|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34556666666777776666666544
No 313
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.17 E-value=1.8e+02 Score=26.76 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=41.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHC--CCCC----CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 004938 190 IDGYFQNGLFDEVLNLFEEMKMS--NVEP----DEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMY 263 (722)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 263 (722)
++.+....++++|++++++..+. ++++ +.......++.-.....-..+..+.+.+ .. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 45566666666666666655321 1221 1122222333333322333344444444 22 34455555666777
Q ss_pred HhcCChHHHHHHH
Q 004938 264 ANCGCMDMAKGLF 276 (722)
Q Consensus 264 ~~~g~~~~A~~~~ 276 (722)
.+.|+-++|..+|
T Consensus 102 ~rLg~~~~A~~lf 114 (235)
T 2d2s_A 102 IKLGLPEQALDLF 114 (235)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHCCChhHHHHHH
Confidence 7777777777775
No 314
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=29.66 E-value=1.1e+02 Score=28.34 Aligned_cols=96 Identities=8% Similarity=-0.080 Sum_probs=50.4
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-------CcccHHHHHHHHH--hcCChHHHHHHHHHHHHh-------
Q 004938 83 RVSNKFIRAISWSHRPKHALKVFLKMLNEGLTI-------DRFSFPPILKAIA--RAEGLLEGMQVHGLGTKL------- 146 (722)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~------- 146 (722)
.-++.|.. .++.|+.+.+..+++...+.+... |..-.+.+..++. +.|+.+-+..+++.-...
T Consensus 12 ~g~t~L~~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i 90 (273)
T 2pnn_A 12 YDRRSIFD-AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV 90 (273)
T ss_dssp CCHHHHHH-HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchHHHH-HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHh
Confidence 33444443 456777777777777666555433 3334445555553 346666666665553221
Q ss_pred --CCC-CchhhHHHHHHHHHhCCCHHHHHHHHhcCCC
Q 004938 147 --GFG-SDPFVQTGLVGMYGACGKILDARLMFDKMSY 180 (722)
Q Consensus 147 --g~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 180 (722)
+.. .|..-.+. +..-+..|+.+-+..+++.-..
T Consensus 91 ~~~~~~~d~~g~tp-L~~A~~~g~~~~v~~Ll~~ga~ 126 (273)
T 2pnn_A 91 NASYTDSYYKGQTA-LHIAIERRNMTLVTLLVENGAD 126 (273)
T ss_dssp TCCCCSTTTTTCCH-HHHHHHTTCHHHHHHHHHTTCC
T ss_pred hcccccccCCCCCH-HHHHHHcCCHHHHHHHHHCCCC
Confidence 110 12222233 3344567888877777776443
No 315
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=29.53 E-value=15 Score=25.90 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=17.9
Q ss_pred ceEEEecCCccccccCCccCCC
Q 004938 698 REIVIRDRTRFHHYKDGVCSCK 719 (722)
Q Consensus 698 ~~~~~~~~~~~h~~~~g~csc~ 719 (722)
..|=+.|....|+|+||+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4567889999999999986543
No 316
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.51 E-value=84 Score=26.64 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=11.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhcc
Q 004938 258 TLITMYANCGCMDMAKGLFDKVL 280 (722)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~~~ 280 (722)
.++.=|...|+.++|.+.++++.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 34444555555555555544443
No 317
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=28.48 E-value=1.1e+02 Score=29.51 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=42.2
Q ss_pred HhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCcchHHHHHHHHHhCC
Q 004938 511 ETMPFAPNV--VIWGSLMAACRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 583 (722)
Q Consensus 511 ~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 583 (722)
...+++|.. .++.+-++.+.+++|+..|-.+.++++++.|+.. ..++|.++...-.+.+
T Consensus 188 T~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 188 THSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 333566653 4677788889999999999999999999988622 2235666666665543
No 318
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.45 E-value=1.2e+02 Score=31.63 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhcCCCCCcc-------hHHHHHHHHHhcCCHHHHHHHHHhC
Q 004938 453 TFIGVLYACSHAGLVDEGREIFASMTNEYNIPPKYE-------HYGCMVDLFGRANLLREALELVETM 513 (722)
Q Consensus 453 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~~ 513 (722)
.++.++..|.+.+.+++|..+..+.. +|.... .+-.++..+.-.+++.+|.+.+...
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 46666777777777777777776553 221111 1112344455567777777666654
No 319
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.44 E-value=1.7e+02 Score=26.08 Aligned_cols=82 Identities=10% Similarity=0.009 Sum_probs=43.1
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHccCChHHHHHHHHHHHHcCCCC---------CHhHHHHHHH
Q 004938 193 YFQNGLFDEVLNLFEEMKMSNVEPDEMV--LSKILSACSRAGNLSYGEAVHEFIIDNNVAL---------DAHLQSTLIT 261 (722)
Q Consensus 193 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~---------~~~~~~~li~ 261 (722)
.++.|+.+ +++.+.+.|..++... -.+.+...+..|+.+.+..+.+.+++.|..+ |..-. +-+.
T Consensus 128 A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~-tpl~ 202 (232)
T 2rfa_A 128 AACVGSEE----IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL-TPFK 202 (232)
T ss_dssp HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSC-CHHH
T ss_pred HHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCC-CHHH
Confidence 34445543 3333444555544221 1234455566778777777777777776543 22222 2344
Q ss_pred HHHhcCChHHHHHHHHhc
Q 004938 262 MYANCGCMDMAKGLFDKV 279 (722)
Q Consensus 262 ~~~~~g~~~~A~~~~~~~ 279 (722)
..++.|+.+-+..+++.-
T Consensus 203 ~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 203 LAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcC
Confidence 455667776666665443
No 320
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.28 E-value=3.6e+02 Score=24.91 Aligned_cols=46 Identities=11% Similarity=-0.061 Sum_probs=17.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 004938 383 GDLRVNNAIIDMYAKCGSLESAREVFERMRRRNVISWTSMINAFAI 428 (722)
Q Consensus 383 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 428 (722)
++..+-...+.++.+.|+.+..-.+.+.+..++...-...+.++..
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 185 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAINI 185 (280)
T ss_dssp SCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 4444444455555555443222222333333444433333334433
No 321
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.48 E-value=63 Score=24.92 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=30.3
Q ss_pred CCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHH
Q 004938 166 GKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFDEVL 203 (722)
Q Consensus 166 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 203 (722)
...+.|+++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788889999888888888888888887767655443
No 322
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.03 E-value=3.3e+02 Score=24.08 Aligned_cols=173 Identities=5% Similarity=-0.094 Sum_probs=91.3
Q ss_pred CChHHHHHHhcc-C---CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC----CCCCcccHHHHHHHHHhcCChHHH
Q 004938 65 SSLYYALSIFSQ-I---PAPPSRVSNKFIRAISWSHRPKHALKVFLKMLNEG----LTIDRFSFPPILKAIARAEGLLEG 136 (722)
Q Consensus 65 g~~~~A~~~f~~-~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~~~~~~a 136 (722)
|+.+....+++. - ..+|..-++. +...+..|+.+-+..+++.-.... ...|..-.+.+ ...+..|+.+
T Consensus 14 g~~~~v~~Ll~~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~-- 89 (232)
T 2rfa_A 14 NDVQALSKLLKFEGCEVHQRGAMGETA-LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL-HIAVINQNVN-- 89 (232)
T ss_dssp TCHHHHHHHHTTTCSCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH-HHHHHTTCHH--
T ss_pred CCHHHHHHHHHhcCCCcccCCCCCCCH-HHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH-HHHHHcCCHH--
Confidence 777777777764 1 1233333443 444456677665555554322110 01122223333 3344556655
Q ss_pred HHHHHHHHHhCCCCchh---------------hHHHHHHHHHhCCCHHHHHHHHhcCCCCCc---ccHHHHHHHHHhCCC
Q 004938 137 MQVHGLGTKLGFGSDPF---------------VQTGLVGMYGACGKILDARLMFDKMSYRDI---VPWSVMIDGYFQNGL 198 (722)
Q Consensus 137 ~~~~~~~~~~g~~~~~~---------------~~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~ 198 (722)
+.+.+++.|..++.. ...+.+...+..|+.+-+..+++.-...+. .-++ .+...+..|+
T Consensus 90 --~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t-~L~~A~~~~~ 166 (232)
T 2rfa_A 90 --LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT-VLHILILQPN 166 (232)
T ss_dssp --HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHTCSC
T ss_pred --HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHcCC
Confidence 444455556554432 123345555677888888888876443332 2233 3455667888
Q ss_pred hhHHHHHHHHHHHCCCCC---------CHhHHHHHHHHHHccCChHHHHHHHHHHH
Q 004938 199 FDEVLNLFEEMKMSNVEP---------DEMVLSKILSACSRAGNLSYGEAVHEFII 245 (722)
Q Consensus 199 ~~~A~~~~~~m~~~g~~p---------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 245 (722)
.+-+..+++.+.+.|..+ |..-.+ -+...+..|+.+.++.+++.-.
T Consensus 167 ~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 167 KTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp HHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcCc
Confidence 888878888888777544 222222 3444456677766666655443
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.77 E-value=4.1e+02 Score=30.40 Aligned_cols=33 Identities=9% Similarity=-0.186 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcc-CCCCC
Q 004938 521 IWGSLMAACRVHGEIELAEFAAKQLLQL-DPDHD 553 (722)
Q Consensus 521 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~ 553 (722)
-|..++..+.+++-++.+....+.+++. .++++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 5667777778888888888888888863 34443
No 324
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=26.45 E-value=22 Score=29.37 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=28.4
Q ss_pred CCcEEEE----cccccCcchhHHHHHHhhhcCceEEEecCCccccccCCccC
Q 004938 670 DSCIRIV----KNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCS 717 (722)
Q Consensus 670 ~~~~~i~----~nl~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~cs 717 (722)
...+||+ ++.++|-+| .|...-..-.++-+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 4557777 457777776 344445555799999999999874
No 325
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=26.09 E-value=20 Score=22.37 Aligned_cols=11 Identities=45% Similarity=0.954 Sum_probs=9.3
Q ss_pred ccccCcchhHH
Q 004938 678 NLRVCEDCHNF 688 (722)
Q Consensus 678 nl~~~~~~~~~ 688 (722)
+.|+|.+|+.-
T Consensus 16 ~YRvC~~CgkP 26 (44)
T 2lo3_A 16 QYRVCEKCGKP 26 (44)
T ss_dssp CEEECTTTCCE
T ss_pred cchhhcccCCc
Confidence 78999999854
No 326
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=25.97 E-value=46 Score=25.05 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHhhCCcccCCccc
Q 004938 612 TDQIYEKLNEVISELKPAGYVPDIHSA 638 (722)
Q Consensus 612 ~~~i~~~l~~l~~~~~~~g~~pd~~~~ 638 (722)
..+|.+.+++...+++..|+.||...+
T Consensus 15 lirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 15 LIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 456788888999999999999998654
No 327
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=25.00 E-value=1.4e+02 Score=24.62 Aligned_cols=14 Identities=14% Similarity=-0.026 Sum_probs=5.6
Q ss_pred HhCCCHHHHHHHHh
Q 004938 163 GACGKILDARLMFD 176 (722)
Q Consensus 163 ~~~g~~~~A~~~f~ 176 (722)
+..|+.+-+..+++
T Consensus 43 ~~~~~~~~v~~Ll~ 56 (156)
T 1bd8_A 43 MMFGSTAIALELLK 56 (156)
T ss_dssp SCTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 33344444443333
No 328
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.59 E-value=1.9e+02 Score=26.36 Aligned_cols=92 Identities=7% Similarity=-0.085 Sum_probs=48.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCc-------ccHHHHHHHHHh--cCChHHHHHHHHHHHHhCCC---------
Q 004938 88 FIRAISWSHRPKHALKVFLKMLNEGLTIDR-------FSFPPILKAIAR--AEGLLEGMQVHGLGTKLGFG--------- 149 (722)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~--------- 149 (722)
.+...++.|+.+....+++.+.+.|..++. .-.+.+..++.. .|+.+-++.+++.-...+..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 344456677887777777777766665543 233344443322 26666665555543332210
Q ss_pred -CchhhHHHHHHHHHhCCCHHHHHHHHhcCCC
Q 004938 150 -SDPFVQTGLVGMYGACGKILDARLMFDKMSY 180 (722)
Q Consensus 150 -~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 180 (722)
.|.. ..+.+...+..|+.+-+..+++.-..
T Consensus 85 ~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~ 115 (256)
T 2etb_A 85 DEFYQ-GHSALHIAIEKRSLQCVKLLVENGAD 115 (256)
T ss_dssp STTTT-TCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccc-CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 0111 22334444567787777777776443
No 329
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=24.10 E-value=1.4e+02 Score=31.10 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=19.8
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCCchHHHHHHHhhhCCCc
Q 004938 529 CRVHGEIELAEFAAKQLLQLDPDHDGALVLLSNIYAKDKRW 569 (722)
Q Consensus 529 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 569 (722)
.+.....+.|...|.++..+.|++...|..|+-+....|+.
T Consensus 162 ~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~ 202 (497)
T 1ya0_A 162 ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDH 202 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccccc
Confidence 33344444555555555555555555555555444444443
No 330
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.97 E-value=2.2e+02 Score=25.52 Aligned_cols=51 Identities=24% Similarity=0.382 Sum_probs=36.0
Q ss_pred CcchHHHHHHHHHh---cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 004938 314 DLICWSAMISGYAE---NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364 (722)
Q Consensus 314 ~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 364 (722)
+...+.-+|+++.+ -.+.+.|+-++-+|++.|-.|....-..++.+....|
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 33445557777755 4889999999999999997777766666666665544
No 331
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=23.59 E-value=1.2e+02 Score=22.98 Aligned_cols=30 Identities=10% Similarity=0.241 Sum_probs=14.0
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 004938 300 VEDARLIFDQMVEKDLICWSAMISGYAENN 329 (722)
Q Consensus 300 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 329 (722)
.+.|.++++.++.++..+|..++.++.+.+
T Consensus 52 ~~kar~Lld~l~~kG~~af~~F~~aL~~~~ 81 (94)
T 2p1h_A 52 QQRAAMLIKMILKKDNDSYVSFYNALLHEG 81 (94)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHcC
Confidence 334444444444444444444444444444
No 332
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=23.53 E-value=4.4e+02 Score=24.28 Aligned_cols=19 Identities=0% Similarity=-0.122 Sum_probs=9.5
Q ss_pred CCCHhHHHHHHHHHHhcCC
Q 004938 250 ALDAHLQSTLITMYANCGC 268 (722)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~ 268 (722)
.++..+-...+.++.+.|+
T Consensus 139 d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVIND 157 (280)
T ss_dssp CSCHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 3455555555555555554
No 333
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.06 E-value=1.9e+02 Score=25.62 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=33.6
Q ss_pred HHHHHHHHHh---cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 004938 318 WSAMISGYAE---NNHPQEALKLFNEMQVCGMKPDKVTMLSVISACAHLG 364 (722)
Q Consensus 318 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 364 (722)
...+|+++.+ -.+.+.|+-++-+|++.|-.|....-..++.+....|
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3446666654 4789999999999999987776666666665555444
No 334
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.75 E-value=5.7e+02 Score=25.38 Aligned_cols=55 Identities=11% Similarity=0.317 Sum_probs=27.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 004938 392 IDMYAKCGSLESAREVFERMRR---RNVISWTSMINAFAIHGDARNALIFFNKMKDESIDPNG 451 (722)
Q Consensus 392 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 451 (722)
+...+..|+.+-+..+++.-.. +|..-++.|..+ ++.|+.+ +.+.+.+.|..|+.
T Consensus 315 L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A-~~~g~~~----iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 315 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA-AQQGHTD----IVTLLLKNGASPNE 372 (437)
T ss_dssp HHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHH----HHHHHHHTTCCSCC
T ss_pred HHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHCChHH----HHHHHHHCcCCCCC
Confidence 4445567777766666664332 222223333332 3456553 34445566766654
No 335
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.46 E-value=1.7e+02 Score=26.79 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=14.4
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCC
Q 004938 191 DGYFQNGLFDEVLNLFEEMKMSNVEPD 217 (722)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~g~~p~ 217 (722)
...++.|+.+.+..+++.+.+.|..++
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 334555666655555555555554433
No 336
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.34 E-value=2.2e+02 Score=20.52 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=41.3
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 004938 207 EEMKMSNVEPDEMVLSKILSACSRAG-NLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269 (722)
Q Consensus 207 ~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 269 (722)
+.|.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34667787777655 34556665554 4556778888887776666777777777777776643
No 337
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=21.75 E-value=2.3e+02 Score=27.74 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=48.5
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCC-
Q 004938 485 PKYEHYGCMVDLFGRANLLREALELVETM-------P-FAPNVVIWGSLMAACRVHGEIELAEFAAKQLLQ-----LDP- 550 (722)
Q Consensus 485 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p- 550 (722)
..+..|..+..-+.|.+++.||+..+.+. . .+-|..+|.-++.. |-++.-.+++ .+|
T Consensus 294 ~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI---------AneliP~~~k~a~~~~~~~ 364 (472)
T 3re2_A 294 HHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEI---------ANDLIPNILKDAVAKADPS 364 (472)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH---------HHTHHHHHHHHHHTCC---
T ss_pred CCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH---------HHHHhhHHHHhhhhccCCC
Confidence 34667889999999999999999998775 1 23456666655533 2222222222 222
Q ss_pred --------CCCchHHHHHHHhhhCCCcch
Q 004938 551 --------DHDGALVLLSNIYAKDKRWQD 571 (722)
Q Consensus 551 --------~~~~~~~~l~~~~~~~g~~~~ 571 (722)
+++..+..|...|-....|+|
T Consensus 365 G~~~~siL~DpecfA~LLrFYDgIC~WEE 393 (472)
T 3re2_A 365 GTGSTNLTSDPKFFALVLQFYDGICLWEE 393 (472)
T ss_dssp -----CGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred CcchhhhccChHHHHHHHHHhhcceeccc
Confidence 255677777777766666664
No 338
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.25 E-value=1.9e+02 Score=23.96 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=39.0
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 004938 207 EEMKMSNVEPDEMVLSKILSACSRAGNLSYGEAVHEFIIDNNVALDAHLQSTLITMYANCGCM 269 (722)
Q Consensus 207 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 269 (722)
+.|++.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-+
T Consensus 11 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3456677776655433 3444444455566777887777776666666666667777777754
No 339
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.92 E-value=6e+02 Score=24.93 Aligned_cols=198 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhCCCHHHHHHHHhcCCCCCcccHHHHHHHHHhCCChh
Q 004938 121 PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGLVGMYGACGKILDARLMFDKMSYRDIVPWSVMIDGYFQNGLFD 200 (722)
Q Consensus 121 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 200 (722)
..++.=|...++..++.+.++.+......+.......-..+=.+...-+.+-.++..+. .++.+-..+..|+ .
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf------~ 130 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSF------D 130 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHH------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHH------H
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC---------------ChHHHHHHHHHHHHc------------------
Q 004938 201 EVLNLFEEMKMSNVEPDEMVLSKILSACSRAG---------------NLSYGEAVHEFIIDN------------------ 247 (722)
Q Consensus 201 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---------------~~~~a~~~~~~~~~~------------------ 247 (722)
..++.+..+.-. .|+...|...+-+.+-.. .-+.+.++++.+...
T Consensus 131 ~lle~ldDl~lD--iP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~ 208 (358)
T 3eiq_C 131 KLLKDLPELALD--TPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGG 208 (358)
T ss_dssp HHHHTHHHHHHH--CTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCC
T ss_pred HHHHhhhhhccc--cccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCC
Q ss_pred CCCCCHhH---HHHHHHHHHhcCChHHHHHHHHhcccC---CchHHHHHHHHHHhcC--CHHHHHHHHhccCCCCcchHH
Q 004938 248 NVALDAHL---QSTLITMYANCGCMDMAKGLFDKVLLK---NLVVSTAMVSGYSRAG--QVEDARLIFDQMVEKDLICWS 319 (722)
Q Consensus 248 g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g--~~~~A~~~f~~~~~~~~~~~~ 319 (722)
|..|.... .+.++.=|...|+.++|.+.++++..| ...+..++..++-+.+ ..+...+++..+...+..+-+
T Consensus 209 ~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 209 GQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred CCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Q ss_pred HHHHHHHh
Q 004938 320 AMISGYAE 327 (722)
Q Consensus 320 ~li~~~~~ 327 (722)
.+..++.+
T Consensus 289 q~~~Gf~~ 296 (358)
T 3eiq_C 289 QMKRGYER 296 (358)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 340
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.47 E-value=5.4e+02 Score=24.78 Aligned_cols=87 Identities=6% Similarity=-0.042 Sum_probs=36.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccH--HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHHHH
Q 004938 81 PSRVSNKFIRAISWSHRPKHALKVFLKMLNEGLTIDRFSF--PPILKAIARAEGLLEGMQVHGLGTKLGFGSDPFVQTGL 158 (722)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 158 (722)
|..-++.|. ..+..|+.+. ++.+.+.|..++.... .+.|...+..|+.+- .+.+++.|..++.....+.
T Consensus 17 d~~g~t~L~-~Aa~~g~~~~----v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~g~t~ 87 (364)
T 3ljn_A 17 DDENMEKIH-VAARKGQTDE----VRRLIETGVSPTIQNRFGCTALHLACKFGCVDT----AKYLASVGEVHSLWHGQKP 87 (364)
T ss_dssp CHHHHHHHH-HHHHHTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHH----HHHHHHHCCCCCCBTTBCH
T ss_pred CCCCCCHHH-HHHHcCCHHH----HHHHHHcCCCccccCCCCCcHHHHHHHcCCHHH----HHHHHHCCCCccccCCCCH
Confidence 444444444 3445566543 3444455655543221 123334444555543 3344444543333222222
Q ss_pred HHHHHhCCCHHHHHHHHh
Q 004938 159 VGMYGACGKILDARLMFD 176 (722)
Q Consensus 159 i~~~~~~g~~~~A~~~f~ 176 (722)
+..-+..|+.+-+..+++
T Consensus 88 L~~A~~~g~~~~v~~Ll~ 105 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVE 105 (364)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333334455444444443
No 341
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=20.22 E-value=3.5e+02 Score=23.95 Aligned_cols=12 Identities=8% Similarity=-0.009 Sum_probs=6.1
Q ss_pred CChHHHHHHhcc
Q 004938 65 SSLYYALSIFSQ 76 (722)
Q Consensus 65 g~~~~A~~~f~~ 76 (722)
|+.+-+..+++.
T Consensus 55 ~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 55 NHLEAVKYLIKA 66 (237)
T ss_dssp TCHHHHHHHHTT
T ss_pred CCHHHHHHHHhC
Confidence 555555555543
Done!