Query 004939
Match_columns 722
No_of_seqs 214 out of 1087
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 10:26:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ldj_A Cullin homolog 1, CUL-1 100.0 4E-132 1E-136 1161.8 68.2 691 8-722 1-760 (760)
2 2hye_C Cullin-4A, CUL-4A; beta 100.0 4E-129 1E-133 1136.6 69.0 680 4-722 55-759 (759)
3 3dpl_C Cullin-5; ubiquitin, NE 100.0 4.1E-79 1.4E-83 658.0 32.7 356 366-722 4-382 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 2.7E-65 9.1E-70 557.4 37.2 355 2-380 24-396 (410)
5 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 4.3E-63 1.5E-67 533.6 27.4 340 2-362 7-364 (364)
6 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 9.6E-60 3.3E-64 505.6 38.1 330 2-363 4-353 (354)
7 2wzk_A Cullin-5, CUL-5; UBL co 100.0 7.7E-60 2.6E-64 512.6 34.7 341 3-363 10-381 (391)
8 3o2p_E Cell division control p 99.9 4.6E-26 1.6E-30 187.4 5.2 82 640-722 7-88 (88)
9 3tdu_C Cullin-1, CUL-1; E2:E3, 99.9 2.7E-26 9.1E-31 184.4 2.7 76 647-722 2-77 (77)
10 1iuy_A Cullin-3 homologue; win 99.9 6.3E-26 2.1E-30 188.9 -0.0 82 641-722 11-92 (92)
11 2do7_A Cullin-4B, CUL-4B; heli 99.9 3.1E-25 1.1E-29 187.1 3.4 81 640-722 15-95 (101)
12 1wi9_A Protein C20ORF116 homol 88.5 0.23 7.9E-06 38.4 2.4 54 661-722 12-65 (72)
13 2jt1_A PEFI protein; solution 85.5 0.78 2.7E-05 36.4 4.0 49 562-612 8-62 (77)
14 3jth_A Transcription activator 85.2 1.6 5.4E-05 36.1 6.2 50 557-609 22-71 (98)
15 3cuo_A Uncharacterized HTH-typ 85.0 1.1 3.9E-05 36.8 5.2 49 557-607 23-71 (99)
16 3lmm_A Uncharacterized protein 84.8 0.41 1.4E-05 53.7 3.0 136 557-716 429-568 (583)
17 2dk5_A DNA-directed RNA polyme 83.9 1 3.5E-05 37.0 4.2 51 554-606 16-68 (91)
18 1qgp_A Protein (double strande 83.6 1.3 4.3E-05 35.1 4.6 47 560-608 16-65 (77)
19 1p4x_A Staphylococcal accessor 82.9 1.3 4.6E-05 43.8 5.5 51 555-607 31-83 (250)
20 1sfx_A Conserved hypothetical 81.4 1.3 4.5E-05 36.9 4.2 50 556-607 18-67 (109)
21 1y0u_A Arsenical resistance op 81.0 2.8 9.6E-05 34.4 6.0 56 557-624 30-85 (96)
22 2htj_A P fimbrial regulatory p 81.0 3.3 0.00011 32.8 6.2 44 562-607 4-47 (81)
23 3tgn_A ADC operon repressor AD 80.9 2.2 7.4E-05 37.8 5.7 52 554-608 34-85 (146)
24 3hsr_A HTH-type transcriptiona 80.8 1.5 5.2E-05 38.8 4.6 51 556-608 34-84 (140)
25 3g3z_A NMB1585, transcriptiona 80.6 1.8 6.1E-05 38.4 5.0 51 556-608 29-79 (145)
26 1xmk_A Double-stranded RNA-spe 79.0 2.5 8.5E-05 33.6 4.7 49 558-608 11-60 (79)
27 1qbj_A Protein (double-strande 78.9 3.1 0.00011 33.3 5.3 57 560-623 12-71 (81)
28 1xn7_A Hypothetical protein YH 78.8 1.9 6.5E-05 34.2 3.9 43 563-607 7-49 (78)
29 3ech_A MEXR, multidrug resista 78.7 1.5 5E-05 38.9 3.7 52 555-608 34-85 (142)
30 3cdh_A Transcriptional regulat 78.6 3 0.0001 37.4 5.9 50 556-607 41-90 (155)
31 1u2w_A CADC repressor, cadmium 78.6 2.7 9.2E-05 36.4 5.3 50 557-608 41-90 (122)
32 3nrv_A Putative transcriptiona 78.3 2.2 7.6E-05 37.9 4.9 51 555-607 37-87 (148)
33 1oyi_A Double-stranded RNA-bin 77.9 2.5 8.6E-05 33.8 4.4 44 561-607 20-63 (82)
34 3pqk_A Biofilm growth-associat 77.5 4.6 0.00016 33.4 6.3 60 557-623 22-81 (102)
35 1sfu_A 34L protein; protein/Z- 77.4 3.2 0.00011 32.5 4.7 44 563-608 20-63 (75)
36 3r0a_A Putative transcriptiona 77.4 2.1 7E-05 37.3 4.2 51 555-607 23-75 (123)
37 2fbh_A Transcriptional regulat 77.2 2.6 8.9E-05 37.2 5.0 50 556-607 35-85 (146)
38 2k02_A Ferrous iron transport 77.1 2 6.9E-05 34.8 3.7 43 563-607 7-49 (87)
39 4hbl_A Transcriptional regulat 77.0 2 6.7E-05 38.5 4.1 51 556-608 39-89 (149)
40 2gxg_A 146AA long hypothetical 76.8 3.3 0.00011 36.5 5.6 49 556-607 35-83 (146)
41 3oop_A LIN2960 protein; protei 76.6 1.6 5.6E-05 38.6 3.4 51 556-608 35-85 (143)
42 2frh_A SARA, staphylococcal ac 76.1 2 6.7E-05 37.5 3.7 51 556-608 35-87 (127)
43 2fu4_A Ferric uptake regulatio 76.0 3.1 0.00011 33.1 4.6 51 555-607 14-71 (83)
44 2qww_A Transcriptional regulat 75.6 2.7 9.2E-05 37.6 4.7 49 556-606 39-87 (154)
45 3eco_A MEPR; mutlidrug efflux 74.8 2.5 8.4E-05 37.1 4.1 50 556-607 29-80 (139)
46 3bj6_A Transcriptional regulat 74.7 3.1 0.00011 37.1 4.8 50 556-607 38-87 (152)
47 1xn7_A Hypothetical protein YH 74.6 1.5 5.3E-05 34.8 2.3 44 660-711 6-49 (78)
48 3bpv_A Transcriptional regulat 74.5 3.2 0.00011 36.2 4.8 50 556-607 27-76 (138)
49 1jgs_A Multiple antibiotic res 74.4 2.5 8.4E-05 37.0 4.0 50 556-607 32-81 (138)
50 3bro_A Transcriptional regulat 74.3 3.3 0.00011 36.3 4.8 50 556-607 32-83 (141)
51 2fa5_A Transcriptional regulat 74.3 3.3 0.00011 37.4 4.9 50 556-607 47-96 (162)
52 3k0l_A Repressor protein; heli 74.3 2.3 7.9E-05 38.6 3.9 50 556-607 44-93 (162)
53 1tbx_A ORF F-93, hypothetical 74.2 2.9 0.0001 34.4 4.2 50 556-607 6-59 (99)
54 2xub_A DNA-directed RNA polyme 72.9 2.9 0.0001 46.3 5.0 135 563-713 24-162 (534)
55 3e6m_A MARR family transcripti 72.8 2.5 8.5E-05 38.3 3.7 51 556-608 51-101 (161)
56 3bdd_A Regulatory protein MARR 72.3 3.1 0.00011 36.5 4.1 50 556-607 29-78 (142)
57 2pex_A Transcriptional regulat 72.3 3.2 0.00011 37.1 4.3 50 556-607 45-94 (153)
58 3lwf_A LIN1550 protein, putati 71.9 8.9 0.00031 34.9 7.2 58 560-624 31-89 (159)
59 2d1h_A ST1889, 109AA long hypo 71.9 3.6 0.00012 34.1 4.3 50 556-607 19-69 (109)
60 3deu_A Transcriptional regulat 71.8 3.4 0.00012 37.8 4.4 51 556-608 51-102 (166)
61 2hr3_A Probable transcriptiona 71.8 3.4 0.00012 36.5 4.3 50 556-607 33-83 (147)
62 1p6r_A Penicillinase repressor 71.6 3.1 0.00011 33.0 3.6 52 555-608 6-61 (82)
63 3bja_A Transcriptional regulat 71.3 2 6.9E-05 37.6 2.6 50 556-607 31-80 (139)
64 2nyx_A Probable transcriptiona 71.0 2.8 9.4E-05 38.4 3.6 50 556-607 43-92 (168)
65 2nnn_A Probable transcriptiona 71.0 3.6 0.00012 35.9 4.3 50 556-607 36-85 (140)
66 1p6r_A Penicillinase repressor 70.6 2 7E-05 34.1 2.3 58 659-721 12-69 (82)
67 1lj9_A Transcriptional regulat 70.6 2.8 9.5E-05 37.0 3.4 50 556-607 27-76 (144)
68 2l02_A Uncharacterized protein 70.6 8.3 0.00029 30.6 5.6 37 562-598 12-48 (82)
69 2kko_A Possible transcriptiona 70.4 2.5 8.7E-05 35.7 2.9 45 560-607 27-71 (108)
70 2a61_A Transcriptional regulat 70.3 3.7 0.00013 36.1 4.2 50 556-607 31-80 (145)
71 2e1c_A Putative HTH-type trans 70.2 4 0.00014 37.7 4.5 66 536-606 8-73 (171)
72 2k4b_A Transcriptional regulat 70.1 2.7 9.2E-05 35.0 2.9 60 658-722 37-96 (99)
73 2rdp_A Putative transcriptiona 70.1 3.4 0.00012 36.7 3.9 50 556-607 40-89 (150)
74 2eth_A Transcriptional regulat 70.0 3.6 0.00012 36.9 4.1 50 556-607 42-91 (154)
75 3t8r_A Staphylococcus aureus C 69.9 9.4 0.00032 34.0 6.8 56 561-623 16-72 (143)
76 1ku9_A Hypothetical protein MJ 69.9 5.7 0.0002 35.0 5.4 50 556-607 24-74 (152)
77 1bby_A RAP30; average structur 69.7 8.5 0.00029 29.5 5.4 57 560-626 10-66 (69)
78 1r1u_A CZRA, repressor protein 69.6 4.3 0.00015 34.0 4.2 48 557-607 25-72 (106)
79 2k02_A Ferrous iron transport 69.4 1.7 5.9E-05 35.2 1.5 45 660-712 6-50 (87)
80 2v79_A DNA replication protein 69.1 3.9 0.00013 36.2 3.9 52 553-606 27-83 (135)
81 1bja_A Transcription regulator 69.1 5 0.00017 33.0 4.2 50 554-605 12-62 (95)
82 1s3j_A YUSO protein; structura 69.0 2.9 9.9E-05 37.4 3.2 50 556-607 35-84 (155)
83 2bv6_A MGRA, HTH-type transcri 69.0 2.5 8.4E-05 37.3 2.7 50 556-607 35-84 (142)
84 3k69_A Putative transcription 68.9 5.5 0.00019 36.4 5.1 46 559-606 15-60 (162)
85 3cjn_A Transcriptional regulat 68.8 4.2 0.00014 36.7 4.3 50 556-607 50-99 (162)
86 3s2w_A Transcriptional regulat 68.7 2.5 8.5E-05 38.2 2.7 50 556-607 48-97 (159)
87 1ub9_A Hypothetical protein PH 68.6 3.6 0.00012 33.7 3.4 48 557-606 15-62 (100)
88 3fm5_A Transcriptional regulat 68.5 4.6 0.00016 35.9 4.4 51 556-608 37-88 (150)
89 2oqg_A Possible transcriptiona 68.3 3.7 0.00013 34.7 3.6 48 557-607 20-67 (114)
90 2pn6_A ST1022, 150AA long hypo 68.0 6.8 0.00023 35.0 5.5 48 557-606 2-49 (150)
91 1z91_A Organic hydroperoxide r 67.9 3.4 0.00012 36.6 3.4 50 556-607 38-87 (147)
92 1ylf_A RRF2 family protein; st 67.8 8.6 0.0003 34.5 6.1 57 560-624 18-74 (149)
93 3jw4_A Transcriptional regulat 67.4 2.3 7.9E-05 37.8 2.2 50 556-607 39-90 (148)
94 3f3x_A Transcriptional regulat 67.3 3.4 0.00012 36.5 3.3 50 555-607 34-83 (144)
95 2fbi_A Probable transcriptiona 67.1 4 0.00014 35.7 3.7 50 556-607 34-83 (142)
96 2heo_A Z-DNA binding protein 1 67.0 3.2 0.00011 31.7 2.5 45 559-605 11-56 (67)
97 2w25_A Probable transcriptiona 66.6 6.1 0.00021 35.3 4.9 49 556-606 5-53 (150)
98 4b8x_A SCO5413, possible MARR- 66.5 4 0.00014 36.4 3.6 51 556-608 33-85 (147)
99 2jsc_A Transcriptional regulat 66.5 7.1 0.00024 33.4 5.0 48 557-607 20-67 (118)
100 3nqo_A MARR-family transcripti 65.7 4.6 0.00016 37.8 4.0 50 556-607 39-90 (189)
101 2v79_A DNA replication protein 65.7 4.4 0.00015 35.9 3.6 28 683-710 56-83 (135)
102 4aik_A Transcriptional regulat 64.9 8.7 0.0003 34.4 5.5 51 556-608 29-80 (151)
103 3kp7_A Transcriptional regulat 64.7 3.8 0.00013 36.5 3.1 48 556-606 36-83 (151)
104 3boq_A Transcriptional regulat 63.8 3.7 0.00013 37.0 2.8 50 556-607 45-95 (160)
105 1xd7_A YWNA; structural genomi 63.5 14 0.00046 32.9 6.5 55 560-624 13-67 (145)
106 2y75_A HTH-type transcriptiona 63.4 16 0.00055 31.6 6.9 48 570-624 24-71 (129)
107 2fxa_A Protease production reg 63.4 4.7 0.00016 38.5 3.6 51 556-608 46-96 (207)
108 2vn2_A DNAD, chromosome replic 63.3 7.5 0.00026 33.9 4.6 53 554-608 28-85 (128)
109 2cfx_A HTH-type transcriptiona 62.8 8.2 0.00028 34.3 4.9 49 556-606 3-51 (144)
110 2wte_A CSA3; antiviral protein 62.5 5.9 0.0002 38.9 4.2 50 556-607 150-199 (244)
111 2ia0_A Putative HTH-type trans 61.8 7.8 0.00027 35.7 4.7 51 554-606 13-63 (171)
112 3f6o_A Probable transcriptiona 61.5 7.3 0.00025 33.3 4.2 48 557-607 17-64 (118)
113 1fse_A GERE; helix-turn-helix 61.0 13 0.00045 28.2 5.3 40 556-597 12-51 (74)
114 2obp_A Putative DNA-binding pr 60.8 8.5 0.00029 31.8 4.1 49 556-606 14-68 (96)
115 2cg4_A Regulatory protein ASNC 60.4 8.6 0.0003 34.4 4.6 49 556-606 6-54 (152)
116 3ulq_B Transcriptional regulat 60.2 13 0.00043 30.2 5.2 42 554-597 28-69 (90)
117 2zkz_A Transcriptional repress 60.1 5.4 0.00018 32.9 2.9 47 557-606 26-72 (99)
118 2dbb_A Putative HTH-type trans 59.7 9.2 0.00031 34.2 4.7 49 556-606 7-55 (151)
119 1je8_A Nitrate/nitrite respons 58.2 15 0.0005 29.1 5.1 40 556-597 22-61 (82)
120 2p5k_A Arginine repressor; DNA 58.1 12 0.00042 27.6 4.5 37 560-596 7-48 (64)
121 2g9w_A Conserved hypothetical 57.6 12 0.0004 33.0 4.9 50 556-607 7-61 (138)
122 1sd4_A Penicillinase repressor 57.3 6 0.0002 34.0 2.9 51 555-607 7-61 (126)
123 2p5v_A Transcriptional regulat 57.3 11 0.00038 34.1 4.9 49 556-606 8-56 (162)
124 1r1t_A Transcriptional repress 56.9 13 0.00045 31.9 5.0 47 558-607 46-92 (122)
125 3r4k_A Transcriptional regulat 56.8 10 0.00035 37.5 4.8 56 561-624 9-65 (260)
126 2qlz_A Transcription factor PF 56.2 14 0.00049 35.8 5.6 153 557-713 11-213 (232)
127 1i1g_A Transcriptional regulat 56.0 9.1 0.00031 33.6 3.9 48 557-606 3-50 (141)
128 2fu4_A Ferric uptake regulatio 55.3 9.2 0.00032 30.1 3.5 58 660-720 21-80 (83)
129 2cyy_A Putative HTH-type trans 54.8 12 0.00042 33.4 4.7 49 556-606 5-53 (151)
130 2xrn_A HTH-type transcriptiona 54.6 14 0.00047 36.0 5.3 56 561-624 9-65 (241)
131 1okr_A MECI, methicillin resis 53.0 7.2 0.00025 33.3 2.7 51 555-607 7-61 (123)
132 2lkp_A Transcriptional regulat 52.6 14 0.00048 31.3 4.5 46 558-606 32-77 (119)
133 3c57_A Two component transcrip 52.4 16 0.00055 29.8 4.6 41 555-597 27-67 (95)
134 1tbx_A ORF F-93, hypothetical 52.3 7.3 0.00025 31.9 2.5 54 661-718 13-66 (99)
135 1x3u_A Transcriptional regulat 52.0 20 0.00068 27.7 5.0 40 556-597 17-56 (79)
136 3i4p_A Transcriptional regulat 51.8 19 0.00066 32.5 5.5 45 559-605 4-48 (162)
137 3u2r_A Regulatory protein MARR 50.9 8 0.00027 35.1 2.8 50 556-607 44-95 (168)
138 2pg4_A Uncharacterized protein 50.9 12 0.00042 30.3 3.6 45 559-605 16-62 (95)
139 2l01_A Uncharacterized protein 50.3 28 0.00094 27.2 5.1 38 561-598 13-51 (77)
140 2yu3_A DNA-directed RNA polyme 50.0 16 0.00054 30.0 4.0 50 555-606 34-85 (95)
141 1p4x_A Staphylococcal accessor 49.0 14 0.00049 36.2 4.4 51 556-608 156-208 (250)
142 1qgp_A Protein (double strande 48.5 6.3 0.00022 31.0 1.4 52 659-718 17-71 (77)
143 2jt1_A PEFI protein; solution 48.5 5.6 0.00019 31.4 1.0 55 653-715 5-61 (77)
144 1q1h_A TFE, transcription fact 48.2 15 0.00051 30.7 3.9 43 563-607 23-66 (110)
145 4fx0_A Probable transcriptiona 48.0 20 0.00069 31.8 4.9 47 556-604 31-82 (148)
146 1hsj_A Fusion protein consisti 47.8 12 0.00043 40.4 4.2 51 555-607 401-453 (487)
147 2htj_A P fimbrial regulatory p 47.4 12 0.0004 29.5 2.9 43 661-711 5-47 (81)
148 1mkm_A ICLR transcriptional re 47.2 24 0.00083 34.4 5.8 45 561-607 11-56 (249)
149 2vn2_A DNAD, chromosome replic 46.8 10 0.00036 33.0 2.7 27 686-712 59-85 (128)
150 3mq0_A Transcriptional repress 46.7 14 0.00049 36.8 4.1 45 562-608 34-79 (275)
151 3r0a_A Putative transcriptiona 46.6 9.1 0.00031 33.0 2.2 58 656-721 26-89 (123)
152 3b73_A PHIH1 repressor-like pr 46.0 17 0.00059 30.8 3.8 50 556-607 11-62 (111)
153 2p7v_B Sigma-70, RNA polymeras 45.7 34 0.0012 25.6 5.2 41 556-596 6-49 (68)
154 1sd4_A Penicillinase repressor 45.7 12 0.00042 31.9 3.0 59 658-721 12-70 (126)
155 3f6v_A Possible transcriptiona 45.2 15 0.0005 33.1 3.5 48 557-607 57-104 (151)
156 2k4b_A Transcriptional regulat 45.0 4.1 0.00014 33.9 -0.3 52 555-608 32-87 (99)
157 2o0y_A Transcriptional regulat 44.6 21 0.00073 35.1 5.0 45 562-608 27-72 (260)
158 1qbj_A Protein (double-strande 44.5 11 0.00036 30.1 2.1 53 658-718 12-67 (81)
159 1okr_A MECI, methicillin resis 44.3 7.9 0.00027 33.1 1.5 56 661-721 15-70 (123)
160 3f8b_A Transcriptional regulat 43.9 22 0.00077 30.2 4.3 58 653-711 9-66 (116)
161 2hzt_A Putative HTH-type trans 43.4 31 0.001 28.6 5.1 46 559-607 15-61 (107)
162 2jpc_A SSRB; DNA binding prote 42.8 23 0.00077 25.7 3.7 35 561-597 4-38 (61)
163 2x48_A CAG38821; archeal virus 42.6 63 0.0022 22.7 6.1 24 571-594 30-53 (55)
164 1uly_A Hypothetical protein PH 42.5 34 0.0012 32.0 5.7 49 556-607 18-66 (192)
165 1tty_A Sigma-A, RNA polymerase 42.5 34 0.0012 27.2 5.0 40 557-596 20-62 (87)
166 2lnb_A Z-DNA-binding protein 1 42.0 15 0.00053 28.6 2.5 37 561-597 22-59 (80)
167 1on2_A Transcriptional regulat 41.4 18 0.00062 31.6 3.5 41 565-607 15-55 (142)
168 2rnj_A Response regulator prot 41.4 17 0.00059 29.2 3.1 40 556-597 30-69 (91)
169 2qvo_A Uncharacterized protein 41.0 14 0.00049 29.9 2.5 47 556-604 10-60 (95)
170 1tc3_C Protein (TC3 transposas 40.9 32 0.0011 23.2 4.2 34 561-596 12-45 (51)
171 2g7u_A Transcriptional regulat 40.9 33 0.0011 33.6 5.6 55 560-624 16-71 (257)
172 2ia2_A Putative transcriptiona 40.9 29 0.00098 34.3 5.2 54 561-624 24-78 (265)
173 3t72_q RNA polymerase sigma fa 40.8 34 0.0012 28.2 4.8 38 557-594 21-61 (99)
174 2x4h_A Hypothetical protein SS 40.7 30 0.001 30.0 4.8 50 555-606 10-63 (139)
175 2fbk_A Transcriptional regulat 39.6 8.8 0.0003 35.4 1.1 50 556-607 67-119 (181)
176 4a0z_A Transcription factor FA 39.2 27 0.00091 32.7 4.4 39 559-597 13-51 (190)
177 1z7u_A Hypothetical protein EF 39.1 24 0.00083 29.6 3.8 47 558-607 22-69 (112)
178 2g9w_A Conserved hypothetical 38.9 23 0.00078 31.0 3.7 59 658-721 11-70 (138)
179 1ku3_A Sigma factor SIGA; heli 38.7 43 0.0015 25.4 4.9 40 557-596 12-54 (73)
180 4a5n_A Uncharacterized HTH-typ 38.1 39 0.0013 29.4 5.0 46 559-607 27-73 (131)
181 1oks_A RNA polymerase alpha su 37.9 40 0.0014 23.9 3.8 44 420-463 5-48 (56)
182 2qlz_A Transcription factor PF 37.6 25 0.00084 34.1 4.0 45 560-607 167-211 (232)
183 3df8_A Possible HXLR family tr 37.4 35 0.0012 28.6 4.5 47 558-607 27-76 (111)
184 1p4w_A RCSB; solution structur 36.3 37 0.0013 27.9 4.4 40 556-597 35-74 (99)
185 3cuo_A Uncharacterized HTH-typ 36.2 18 0.00062 29.2 2.4 54 657-718 25-78 (99)
186 1yyv_A Putative transcriptiona 35.3 41 0.0014 29.2 4.7 48 557-607 34-82 (131)
187 2frh_A SARA, staphylococcal ac 33.7 21 0.00071 30.7 2.5 40 669-716 52-93 (127)
188 3kp7_A Transcriptional regulat 33.5 13 0.00044 32.9 1.1 51 658-717 40-94 (151)
189 3to7_A Histone acetyltransfera 33.3 33 0.0011 33.7 4.0 38 559-596 194-232 (276)
190 3hug_A RNA polymerase sigma fa 32.5 58 0.002 26.0 4.9 38 557-596 39-77 (92)
191 2fsw_A PG_0823 protein; alpha- 32.2 48 0.0016 27.4 4.5 45 560-607 27-72 (107)
192 2o8x_A Probable RNA polymerase 31.9 64 0.0022 23.8 4.8 39 556-596 16-55 (70)
193 2f2e_A PA1607; transcription f 31.8 56 0.0019 28.9 5.1 46 559-607 25-70 (146)
194 1r7j_A Conserved hypothetical 31.1 92 0.0031 25.2 5.9 44 560-607 10-53 (95)
195 3i4p_A Transcriptional regulat 30.9 26 0.00088 31.7 2.7 47 657-711 4-50 (162)
196 2p4w_A Transcriptional regulat 30.5 36 0.0012 32.1 3.8 48 557-607 14-61 (202)
197 2dk5_A DNA-directed RNA polyme 30.2 35 0.0012 27.7 3.1 24 687-710 45-68 (91)
198 2qww_A Transcriptional regulat 29.5 29 0.00098 30.6 2.8 45 658-710 43-87 (154)
199 1nkl_A NK-lysin; saposin fold, 29.4 1.4E+02 0.0048 23.0 6.5 58 369-430 7-65 (78)
200 1sfx_A Conserved hypothetical 28.8 21 0.00071 29.2 1.6 47 658-712 22-68 (109)
201 2ozu_A Histone acetyltransfera 28.1 41 0.0014 33.2 3.7 28 569-596 211-238 (284)
202 1xma_A Predicted transcription 27.9 36 0.0012 30.2 3.1 57 655-712 40-96 (145)
203 3cdh_A Transcriptional regulat 26.4 42 0.0014 29.5 3.3 48 657-712 44-91 (155)
204 2eth_A Transcriptional regulat 26.3 40 0.0014 29.6 3.2 47 658-712 46-92 (154)
205 2ou2_A Histone acetyltransfera 25.9 56 0.0019 32.3 4.2 26 572-597 212-237 (280)
206 1bia_A BIRA bifunctional prote 25.9 66 0.0023 32.7 5.1 41 558-598 5-45 (321)
207 1l9l_A Granulysin; saposin fol 25.1 1.4E+02 0.0048 22.9 5.6 57 369-430 7-65 (74)
208 3tgn_A ADC operon repressor AD 25.0 33 0.0011 29.8 2.3 43 661-712 43-85 (146)
209 2pq8_A Probable histone acetyl 24.8 43 0.0015 33.0 3.1 37 560-596 195-232 (278)
210 3f2g_A Alkylmercury lyase; MER 24.6 88 0.003 29.9 5.2 38 560-597 24-61 (220)
211 2b0l_A GTP-sensing transcripti 24.3 45 0.0015 27.5 2.8 54 658-719 30-85 (102)
212 2pg4_A Uncharacterized protein 23.7 16 0.00056 29.5 -0.0 45 666-718 25-71 (95)
213 1j5y_A Transcriptional regulat 23.6 70 0.0024 29.5 4.4 40 559-598 22-62 (187)
214 2fbh_A Transcriptional regulat 23.5 56 0.0019 28.1 3.5 47 658-712 39-86 (146)
215 3bja_A Transcriptional regulat 23.5 43 0.0015 28.6 2.8 49 661-717 38-88 (139)
216 3hrs_A Metalloregulator SCAR; 23.4 80 0.0027 29.9 4.8 44 562-607 10-53 (214)
217 3dp7_A SAM-dependent methyltra 23.0 87 0.003 32.2 5.4 41 565-607 42-83 (363)
218 3mzy_A RNA polymerase sigma-H 22.9 74 0.0025 27.8 4.3 39 556-596 110-148 (164)
219 3cuq_B Vacuolar protein-sortin 22.9 1.9E+02 0.0065 27.4 7.3 50 556-607 152-201 (218)
220 3jth_A Transcription activator 22.6 50 0.0017 26.6 2.8 53 658-719 25-77 (98)
221 3k2z_A LEXA repressor; winged 22.5 91 0.0031 28.9 5.0 50 556-607 3-57 (196)
222 1i1g_A Transcriptional regulat 22.4 35 0.0012 29.6 1.9 47 658-712 6-52 (141)
223 3hsr_A HTH-type transcriptiona 22.3 32 0.0011 29.8 1.6 47 658-712 38-84 (140)
224 2qvo_A Uncharacterized protein 21.9 34 0.0012 27.6 1.6 29 687-716 39-67 (95)
225 1v4r_A Transcriptional repress 21.8 39 0.0013 27.6 2.0 41 566-608 28-69 (102)
226 1mzb_A Ferric uptake regulatio 21.4 1E+02 0.0035 26.6 4.8 52 554-607 14-72 (136)
227 3bro_A Transcriptional regulat 21.3 49 0.0017 28.3 2.7 46 659-712 37-84 (141)
228 2k9l_A RNA polymerase sigma fa 21.3 1.2E+02 0.0042 23.3 4.7 37 560-596 34-72 (76)
229 1ku9_A Hypothetical protein MJ 21.0 43 0.0015 29.0 2.2 42 668-717 39-82 (152)
230 2b0l_A GTP-sensing transcripti 20.8 60 0.002 26.8 2.9 43 563-607 33-76 (102)
231 2dbb_A Putative HTH-type trans 20.6 48 0.0017 29.2 2.5 46 658-711 11-56 (151)
232 3bpv_A Transcriptional regulat 20.5 39 0.0013 28.9 1.8 47 658-712 31-77 (138)
233 3k6t_A Female germline-specifi 20.3 77 0.0026 23.4 2.9 38 184-221 6-43 (60)
234 1xsv_A Hypothetical UPF0122 pr 20.3 1.3E+02 0.0043 25.2 4.9 40 556-596 26-65 (113)
235 2h09_A Transcriptional regulat 20.2 86 0.003 27.5 4.1 40 566-607 48-87 (155)
236 1l3l_A Transcriptional activat 20.2 1.1E+02 0.0037 29.2 5.1 41 555-597 173-213 (234)
237 3clo_A Transcriptional regulat 20.1 82 0.0028 30.6 4.3 41 555-597 197-237 (258)
238 3szt_A QCSR, quorum-sensing co 20.0 93 0.0032 29.8 4.6 41 555-597 175-215 (237)
No 1
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=3.9e-132 Score=1161.84 Aligned_cols=691 Identities=33% Similarity=0.592 Sum_probs=638.0
Q ss_pred HHHhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhhhhccC-----------------------CCCCchHHHHH
Q 004939 8 LDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQK-----------------------PPHDYSQQLYD 64 (722)
Q Consensus 8 fd~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~lc~~~-----------------------~~~~~~~~LY~ 64 (722)
||++|+.|++||++|+. + .+++..+||++|++||++|+++ +|+.+|+.||+
T Consensus 1 f~~~W~~L~~ai~~I~~---~---~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~ 74 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVYT---R---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK 74 (760)
T ss_dssp CHHHHHHHHHHHHHHTT---C---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred ChhhHHHHHHHHHHHHh---c---CCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHH
Confidence 78999999999999654 3 2689999999999999999986 23457999999
Q ss_pred HHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHHHHHHHHHHhhchhhHhhhhcCC------CCcHHHHHHHHHHH
Q 004939 65 KYKQAFEEYISSMVLPSLSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRS------LPALNEVGLTCFRE 138 (722)
Q Consensus 65 ~l~~~l~~~l~~~~~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~------~~~i~~l~l~lf~~ 138 (722)
++++.++.|+.+.+. .+....++.||..|..+|.+|+.++++|+++|+||||+||++++ .++|+++|+.+||+
T Consensus 75 ~l~~~l~~~l~~~~~-~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~ 153 (760)
T 1ldj_A 75 RLKEFLKNYLTNLLK-DGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRD 153 (760)
T ss_dssp HHHHHHHHHHHHHHH-TTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHH-HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHH
Confidence 999999999998654 34455678899999999999999999999999999999999875 78999999999998
Q ss_pred ----------------HHHHHhcCCccCHHHHHHHHHHHHHhccc---------chhchHHHHHHHHHHHHHHHHHHHHH
Q 004939 139 ----------------QIDKEREGEQIDRALLKNVLDIFVEIGMG---------QMDSYEKDFEEHMLQDTGAYYSRKAS 193 (722)
Q Consensus 139 ----------------~I~~~R~g~~i~~~~i~~~i~~~~~l~~~---------~~~~Y~~~FE~~~L~~t~~yY~~~s~ 193 (722)
+|+++|.|+.||+.+|+++++||+.||.+ ++.+|.+.||++||++|.+||+.+++
T Consensus 154 ~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~ 233 (760)
T 1ldj_A 154 CLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST 233 (760)
T ss_dssp HHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999853 36899999999999999999999999
Q ss_pred hhHhcCChhHHHHHHHHHHHHHHHHHchhcCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcHHHHHHHHHh
Q 004939 194 NWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRL 273 (722)
Q Consensus 194 ~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l~~~t~~~l~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~~L~~ly~L 273 (722)
.|+.++++++||++|+.++++|.+||..||+++|.++|.++|+++||.+|.+.|+ +||..||.+++.++|++||+|
T Consensus 234 ~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~dL~~my~L 309 (760)
T 1ldj_A 234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNL 309 (760)
T ss_dssp HHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999885 589999999999999999999
Q ss_pred hccCCCChHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004939 274 YHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKE 353 (722)
Q Consensus 274 ~~~~~~~l~~l~~~~~~~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~I~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~ 353 (722)
|+++++|++.|+..|++||.+.|.+++....+. ...+|..||+.|+++|++|+.++..||++|+.|..++++
T Consensus 310 ~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~--------~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~ 381 (760)
T 1ldj_A 310 VSRIQDGLGELKKLLETHIHNQGLAAIEKCGEA--------ALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDK 381 (760)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTS--------GGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred hCcCcchHHHHHHHHHHHHHHHHHHHHHHhhcc--------cccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 999999999999999999999999999764321 124689999999999999999999999999999999999
Q ss_pred HHHHHhhCC------CCCCCcHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhheecccChhHHHHHHHHHHHHHhcC
Q 004939 354 AFEIFCNKA------VGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLF 427 (722)
Q Consensus 354 af~~~~N~~------~~~~~~~e~La~y~d~~lk~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~ 427 (722)
||+.|+|.+ .+..++||+||+|||.+||+|. ...+++|++..|++++.||+|+++||+|+.+|+++||+|||.
T Consensus 382 af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~ 460 (760)
T 1ldj_A 382 ACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSS-KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVH 460 (760)
T ss_dssp HHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCS-SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCccccccccccccHHHHHHHhHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 999999986 2346899999999999999865 446789999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhcchhhHhHHHHHHhHHHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCCcc
Q 004939 428 DRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLN 507 (722)
Q Consensus 428 ~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~ 507 (722)
+++.+.+.|+.||++||.+||.+||++|++||+|+..|++++..|++++.++ ...+++|+|.|||+++||..+..++.
T Consensus 461 ~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~--~~~~~~~~v~VLs~~~WP~~~~~~~~ 538 (760)
T 1ldj_A 461 QNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS--EPLDLDFSIQVLSSGSWPFQQSCTFA 538 (760)
T ss_dssp TCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCCSSEEEEEEEETTTSCCCCCSCCC
T ss_pred CCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCCeeEEecCCCCCCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999987651 22478999999999999998878899
Q ss_pred CChhHHHHHHHHHHHHhhcCCCceEEeccCCceEEEEeEecCeeEEEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHH
Q 004939 508 LPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHD 587 (722)
Q Consensus 508 lP~~l~~~~~~F~~~Y~~~~~~R~L~w~~~lg~~~i~~~~~~~~~~l~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~ 587 (722)
+|++|+.+++.|++||..+|+||+|+|.+++|+|+|+++|++++++|+||++||+||++||+.+.+|++||++.||++.+
T Consensus 539 lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~ 618 (760)
T 1ldj_A 539 LPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMD 618 (760)
T ss_dssp CCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhhcccceeecCC-----CCCCCCCCCeEEecccCCCCCcceeccCCChh----hhhhHHHhHHHhhhhhhh
Q 004939 588 DLVRLLHSLSCAKYKILLKEP-----NTKTISQSDHFEFNSKFTDRMRRIKIPLPPVD----ERKKIVEDVDKDRRYAID 658 (722)
Q Consensus 588 ~l~~~L~~L~~~k~kiL~~~~-----~~~~i~~~~~~~~N~~f~~~~~~i~i~~~~~~----e~~~~~~~v~~~r~~~i~ 658 (722)
+|+++|++|+ +.+||.+.| +|+.+.+++.|.+|.+|++++.||+|+.+... |.+.+.+.+++||+..|+
T Consensus 619 ~l~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~ 696 (760)
T 1ldj_A 619 ILAQVLQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQ 696 (760)
T ss_dssp HHHHHHHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HCCcceeCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchhhhhHHHHHHHHHHhHhe
Confidence 9999999997 678998554 78889999999999999999999999865442 344567789999999999
Q ss_pred hheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCceeecC
Q 004939 659 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 722 (722)
Q Consensus 659 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y~Yia 722 (722)
||||||||+||+|+|++|+++|+++++++|.|++.+||+|||.||+||||+|+++|+++|+|+|
T Consensus 697 AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 697 AAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred eeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=3.7e-129 Score=1136.56 Aligned_cols=680 Identities=35% Similarity=0.650 Sum_probs=633.1
Q ss_pred CCCCHHHhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhccccccc
Q 004939 4 KTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPSLS 83 (722)
Q Consensus 4 ~~~~fd~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~l~~~l~~~~~~~l~ 83 (722)
+..+||++|+.|++||++| +++++. +++ ||++|++||++|+++ +|+.||+++++.+++|+...+ +.+.
T Consensus 55 ~~~~~e~~W~~L~~ai~~I---~~~~~~-~~s---~e~LY~~vy~lc~~k----~~~~LY~~l~~~~~~~l~~~~-~~l~ 122 (759)
T 2hye_C 55 PDNYTQDTWRKLHEAVRAV---QSSTSI-RYN---LEELYQAVENLCSHK----VSPMLYKQLRQACEDHVQAQI-LPFR 122 (759)
T ss_dssp SCCTTTTHHHHHHHHHHTT---STTCCC-SSC---HHHHHHHHHHHCCTT----THHHHHHHHHHHHHHHHHHHH-HHHT
T ss_pred CcchHHHHHHHHHHHHHHH---HhCCCC-CCC---HHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3456799999999999984 555553 465 999999999999998 799999999999999998754 3443
Q ss_pred c--cCchHHHHHHHHHHHHHHHHHHHHHHhhchhhHhhhhcCC-CCcHHHHHHHHHHH------------------HHHH
Q 004939 84 E--KHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRS-LPALNEVGLTCFRE------------------QIDK 142 (722)
Q Consensus 84 ~--~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~-~~~i~~l~l~lf~~------------------~I~~ 142 (722)
. .+++.||..|..+|.+|+.++.+|+++|+||||+||.++. .++|+++|+.+||+ +|++
T Consensus 123 ~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~ 202 (759)
T 2hye_C 123 EDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIER 202 (759)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHT
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Confidence 2 2345899999999999999999999999999999999876 79999999999998 7899
Q ss_pred HhcCCccCHHHHHHHHHHHHHhcccchhchHHHHHHHHHHHHHHHHHHHHHhhHhcCChhHHHHHHHHHHHHHHHHHchh
Q 004939 143 EREGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHY 222 (722)
Q Consensus 143 ~R~g~~i~~~~i~~~i~~~~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~ 222 (722)
+|+|+.||+.+|+++++||++| .+|.+.||++||++|.+||+.+++.|+.++++++|+++|+.++++|.+||..|
T Consensus 203 eR~Ge~id~~llk~vi~ml~~L-----~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~y 277 (759)
T 2hye_C 203 ERSGEAVDRSLLRSLLGMLSDL-----QVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITY 277 (759)
T ss_dssp TTTTCCCCHHHHHHHHHHHHHT-----TCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTT
T ss_pred HhcCCCCcHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999986 58999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHh
Q 004939 223 LHSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQ 302 (722)
Q Consensus 223 l~~~t~~~l~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~i~~~ 302 (722)
|+++|.++|.++|+++||.+|++.|++ +|+..||.+++.++|++||+||++++++++.++..|++||++.|.+++.+
T Consensus 278 L~~~t~~~l~~~~~~~Li~~~~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~ 354 (759)
T 2hye_C 278 LDHSTQKPLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVIN 354 (759)
T ss_dssp SCTTTHHHHHHHHHHHHTTTCSHHHHH---TTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhHHHhcC
Confidence 999999999999999999999999986 48999999999999999999999999999999999999999999999854
Q ss_pred hHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHhhc
Q 004939 303 AEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKK 382 (722)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~I~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~N~~~~~~~~~e~La~y~d~~lk~ 382 (722)
.. .+..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+. .++||+||+|||.+||+
T Consensus 355 ~~-------------~~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~--~~~~E~la~y~D~~Lk~ 419 (759)
T 2hye_C 355 PE-------------KDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRP--NKPAELIAKHVDSKLRA 419 (759)
T ss_dssp GG-------------GTTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHSS
T ss_pred cc-------------cHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCC--CchHHHHHHHHHHHhcc
Confidence 21 2357999999999999999999999999999999999999999863 57899999999999998
Q ss_pred CCCCCCChHHHHHHHHHHhhheecccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhcchhhHhHHHHHHhH
Q 004939 383 GGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL 462 (722)
Q Consensus 383 ~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~ 462 (722)
|. .+.+++|++..+++++.||+|+++||+|+.+|+++||+|||.+++++.+.|+.||++||.+||.+||++|++||+||
T Consensus 420 ~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di 498 (759)
T 2hye_C 420 GN-KEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDM 498 (759)
T ss_dssp CG-GGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHH
T ss_pred CC-CCCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 64 34578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCCccCChhHHHHHHHHHHHHhhcCCCceEEeccCCceEE
Q 004939 463 TLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCN 542 (722)
Q Consensus 463 ~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~lP~~l~~~~~~F~~~Y~~~~~~R~L~w~~~lg~~~ 542 (722)
..|++++..|++++.+.+ ...+++|+|.|||+++||..+..++.+|++|+.+++.|++||..+|+||+|+|.+++|+|+
T Consensus 499 ~~S~~l~~~f~~~~~~~~-~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~ 577 (759)
T 2hye_C 499 ELSKDIMVHFKQHMQNQS-DSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAV 577 (759)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEE
T ss_pred HHHHHHHHHHHHHHhccc-CCCCCceEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCcEE
Confidence 999999999999876432 1246899999999999999988889999999999999999999999999999999999999
Q ss_pred EEeEecCeeEEEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEec
Q 004939 543 INGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFN 622 (722)
Q Consensus 543 i~~~~~~~~~~l~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N 622 (722)
|+++|++++++|+||++||+||++||+.+.+|++||++.||+++++|+++|++|+++|.+||.+.|+++.+.+++.|.+|
T Consensus 578 l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN 657 (759)
T 2hye_C 578 LKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFN 657 (759)
T ss_dssp EECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEEC
T ss_pred EEEEeCCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEee
Confidence 99999989999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred ccCCCCCcceeccCCCh----hhhhhHHHhHHHhhhhhhhhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHH
Q 004939 623 SKFTDRMRRIKIPLPPV----DERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKR 698 (722)
Q Consensus 623 ~~f~~~~~~i~i~~~~~----~e~~~~~~~v~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~ 698 (722)
.+|+++..||+|+.+.. +|.+.+.+.+.+||+..|+||||||||+||+|+|++|+.+|+++++ |.|++.+||+|
T Consensus 658 ~~f~~~~~riki~~i~~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~--F~p~~~~IKk~ 735 (759)
T 2hye_C 658 GEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FPVKPGDLKKR 735 (759)
T ss_dssp CCCCCSCSSEECGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS--SCCCHHHHHHH
T ss_pred ccccCCceEEEeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC--CCCCHHHHHHH
Confidence 99999999999985432 3455677889999999999999999999999999999999999997 99999999999
Q ss_pred HHhhhhhhhhcccCCCCCceeecC
Q 004939 699 MEDLITRDYLERDKENPNMFRYLA 722 (722)
Q Consensus 699 Ie~Liereyl~r~~~d~~~y~Yia 722 (722)
||.||+||||+|+++|+++|+|+|
T Consensus 736 Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 736 IESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp HHHHHHTTSCBCCSSCTTEEECCC
T ss_pred HHHHhcccceecCCCCCCeeEecC
Confidence 999999999999999999999998
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=4.1e-79 Score=658.03 Aligned_cols=356 Identities=32% Similarity=0.510 Sum_probs=324.0
Q ss_pred CCcHHHHHHHHHHHhhcCC-CCCCChHHHHHHHHHHhhheecccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 004939 366 SSSSELLATFCDNILKKGG-NEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLK 444 (722)
Q Consensus 366 ~~~~e~La~y~d~~lk~~~-~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~Lk 444 (722)
.++||+||+|||.+||+|+ +.+.++++++..|++++.||+|+++||+|+.+|+++||+|||++++.+.+.|+.||++|+
T Consensus 4 ~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kLK 83 (382)
T 3dpl_C 4 SKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLR 83 (382)
T ss_dssp CCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 5789999999999999862 245689999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc--hhhHhHHHHHHhHHHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCC-CCCccCChhHHHHHHHHHH
Q 004939 445 QQCGG--QFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYK-SSDLNLPSEMVKCVEVFKG 521 (722)
Q Consensus 445 ~~~G~--~~~~kl~~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~-~~~~~lP~~l~~~~~~F~~ 521 (722)
+||. +||++|++||+||..|++++..|++++.+.+....+++|+|.|||+++||..+ ..++.+|++|+.+++.|++
T Consensus 84 -~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~~ 162 (382)
T 3dpl_C 84 -EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEE 162 (382)
T ss_dssp -HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHHH
T ss_pred -HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHHH
Confidence 9997 99999999999999999999999998764432223689999999999999874 5689999999999999999
Q ss_pred HHhhcCCCceEEeccCCceEEEEeEecCeeEEEEEcHHHHHHHHhhcCC--CCcCHHHHHHHhCCCHHHHHHHHhHhhhc
Q 004939 522 FYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCA 599 (722)
Q Consensus 522 ~Y~~~~~~R~L~w~~~lg~~~i~~~~~~~~~~l~~s~~Q~~ILl~fn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~ 599 (722)
||..+|+||+|+|.|++|+|+|++++++++++|+||++||+||++||+. +.+|++||++.||++.++|+++|++|++.
T Consensus 163 fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~ 242 (382)
T 3dpl_C 163 FYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAF 242 (382)
T ss_dssp HHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_pred HHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998999999999999999999985 79999999999999999999999999863
Q ss_pred ---ccceeecCCC---CCCCCCCCeEEecccCCCC-----CcceeccCCC------hhhhhhHHHhHHHhhhhhhhhhee
Q 004939 600 ---KYKILLKEPN---TKTISQSDHFEFNSKFTDR-----MRRIKIPLPP------VDERKKIVEDVDKDRRYAIDAALV 662 (722)
Q Consensus 600 ---k~kiL~~~~~---~~~i~~~~~~~~N~~f~~~-----~~~i~i~~~~------~~e~~~~~~~v~~~r~~~i~A~IV 662 (722)
|.+||.++|. ++.+.+++.|.+|.+|++. .++++|+.++ ..+.+++.+.+.+||++.|+||||
T Consensus 243 ~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaIV 322 (382)
T 3dpl_C 243 PKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAII 322 (382)
T ss_dssp TTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeEEEe
Confidence 5679998875 3568889999999999872 2566766432 234456778899999999999999
Q ss_pred eccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCceeecC
Q 004939 663 RIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 722 (722)
Q Consensus 663 RimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y~Yia 722 (722)
||||+||+|+|++|+.+|+++++++|.|++.+||+|||+|||||||+||++|+++|+|+|
T Consensus 323 RIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 323 QIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred hhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.7e-65 Score=557.37 Aligned_cols=355 Identities=24% Similarity=0.473 Sum_probs=316.2
Q ss_pred CCCCCCHHHhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhccccc
Q 004939 2 DRKTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPS 81 (722)
Q Consensus 2 ~~~~~~fd~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~l~~~l~~~~~~~ 81 (722)
+.++.+||++|+.|++||.+|+ ++++. ++| ||+||++||++|+++ +|++||+++++.+++|+.+.+.+.
T Consensus 24 ~~~~~~~~~~W~~L~~ai~~I~---~~~~~-~~s---~eeLY~~vy~lc~~k----~g~~LY~~l~~~~~~~l~~~v~~~ 92 (410)
T 4ap2_B 24 TMDEKYVNSIWDLLKNAIQEIQ---RKNNS-GLS---FEELYRNAYTMVLHK----HGEKLYTGLREVVTEHLINKVRED 92 (410)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH---TTCCT-TCC---HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHH---hcCCC-CCC---HHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455689999999999999964 45554 455 999999999999998 899999999999999999666677
Q ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHhhchhhHhhhhcCCCCcHHHHHHHHHHH------------------HHHHH
Q 004939 82 LSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFRE------------------QIDKE 143 (722)
Q Consensus 82 l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~i~~l~l~lf~~------------------~I~~~ 143 (722)
+....++.||+.|..+|++|+.++.+|+++|+||||+||++++.++|+++|+.+||+ +|+++
T Consensus 93 l~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~e 172 (410)
T 4ap2_B 93 VLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARE 172 (410)
T ss_dssp HHTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTTCCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHhccHHHHHhhHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 766666789999999999999999999999999999999999999999999999998 79999
Q ss_pred hcCCccCHHHHHHHHHHHHHhcccchhchHHHHHHHHHHHHHHHHHHHHHhhHhcCChhHHHHHHHHHHHHHHHHHchhc
Q 004939 144 REGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYL 223 (722)
Q Consensus 144 R~g~~i~~~~i~~~i~~~~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l 223 (722)
|.|+.||+.+|+++++||++||.+.+.+|.+.||++||++|.+||+.+++.|+.++++++||++|+.+|++|.+||..||
T Consensus 173 R~Ge~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL 252 (410)
T 4ap2_B 173 RKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCL 252 (410)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhh
Q 004939 224 HSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQA 303 (722)
Q Consensus 224 ~~~t~~~l~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~i~~~~ 303 (722)
+++|.++|.++|+++||.+|++.|++++++||..||++++.++|++||+||+++++|++.|+..|++||++.|.+++...
T Consensus 253 ~~sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~iv~~~ 332 (410)
T 4ap2_B 253 DKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEE 332 (410)
T ss_dssp CGGGHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999765
Q ss_pred HHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHh
Q 004939 304 EDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNIL 380 (722)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~I~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~N~~~~~~~~~e~La~y~d~~l 380 (722)
.. ..+|..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+. +.||+||+|||.--
T Consensus 333 ~~----------~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~---~spElla~y~D~~~ 396 (410)
T 4ap2_B 333 GE----------GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS---RSPEYLAENLYFQS 396 (410)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC------------------
T ss_pred cc----------ccChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC---CCHHHHHHHccCcc
Confidence 32 136889999999999999999999999999999999999999999874 67899999999743
No 5
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=100.00 E-value=4.3e-63 Score=533.59 Aligned_cols=340 Identities=24% Similarity=0.497 Sum_probs=267.8
Q ss_pred CCCCCCHHHhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhccccc
Q 004939 2 DRKTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPS 81 (722)
Q Consensus 2 ~~~~~~fd~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~l~~~l~~~~~~~ 81 (722)
+.++.+||++|+.|++||++|+ ++++. ++| ||++|++||++|+++ +|++||+++++.+++|+.+.+.+.
T Consensus 7 ~~~~~~~~~~W~~L~~ai~~I~---~~~~~-~~s---~e~LY~~vy~lc~~k----~g~~LY~~l~~~~~~~l~~~v~~~ 75 (364)
T 4eoz_B 7 TMDEKYVNSIWDLLKNAIQEIQ---RKNNS-GLS---FEELYRNAYTMVLHK----HGEKLYTGLREVVTEHLINKVRED 75 (364)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH---TTCGG-GCC---HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHH---hcCCC-CCC---HHHHHHHHHHHHhhh----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566799999999999999965 45443 355 999999999999998 899999999999999999656677
Q ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHhhchhhHhhhhcCCCCcHHHHHHHHHHH------------------HHHHH
Q 004939 82 LSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFRE------------------QIDKE 143 (722)
Q Consensus 82 l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~i~~l~l~lf~~------------------~I~~~ 143 (722)
+....++.||+.|..+|++|+.++.+|+++|+||||+|+++++.++|+++|+.+||+ +|+++
T Consensus 76 ~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~e 155 (364)
T 4eoz_B 76 VLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARE 155 (364)
T ss_dssp HHTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 766666789999999999999999999999999999999999999999999999998 69999
Q ss_pred hcCCccCHHHHHHHHHHHHHhcccchhchHHHHHHHHHHHHHHHHHHHHHhhHhcCChhHHHHHHHHHHHHHHHHHchhc
Q 004939 144 REGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYL 223 (722)
Q Consensus 144 R~g~~i~~~~i~~~i~~~~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l 223 (722)
|.|+.||+.+|+++++||+++|.+.+.+|.+.||++||++|.+||+.+++.|+.++++++||++|+.++++|.+||..||
T Consensus 156 R~Ge~id~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL 235 (364)
T 4eoz_B 156 RKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCL 235 (364)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHhh
Q 004939 224 HSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQA 303 (722)
Q Consensus 224 ~~~t~~~l~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~i~~~~ 303 (722)
+++|.++|.++|+++||.+|++.|++++++||..||++++.++|++||+||+++++|++.+++.|++||++.|.+++...
T Consensus 236 ~~~T~~~l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~ 315 (364)
T 4eoz_B 236 DKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEE 315 (364)
T ss_dssp CGGGHHHHHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC-------
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999765
Q ss_pred HHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhCC
Q 004939 304 EDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKA 362 (722)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~I~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~N~~ 362 (722)
.. ..+|..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+
T Consensus 316 ~~----------~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 316 GE----------GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp -----------------------------------------------------------
T ss_pred cc----------cCChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Confidence 32 13588999999999999999999999999999999999999999964
No 6
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=100.00 E-value=9.6e-60 Score=505.55 Aligned_cols=330 Identities=27% Similarity=0.546 Sum_probs=300.3
Q ss_pred CCCCCCHHHhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhccccc
Q 004939 2 DRKTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPS 81 (722)
Q Consensus 2 ~~~~~~fd~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~l~~~l~~~~~~~ 81 (722)
..++.+||++|+.|++||.+|+ ++++. ++| ||++|++||++|+++ +|++||+++++.++.|+.+.+.+.
T Consensus 4 ~~~~~~~~~~W~~L~~ai~~I~---~~~~~-~~s---~eeLY~~vy~lc~~~----~g~~LY~~l~~~~~~~l~~~~~~~ 72 (354)
T 4a64_A 4 KLPENYTDETWQKLKEAVEAIQ---NSTSI-KYN---LEELYQAVENLCSYK----ISANLYKQLRQICEDHIKAQIHQF 72 (354)
T ss_dssp CCCSSSTTHHHHHHHHHHHHHH---TTCCC-CSC---HHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHTTGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHH---hCCCC-CCC---HHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999964 45554 455 999999999999998 899999999999999998866544
Q ss_pred cccc-CchHHHHHHHHHHHHHHHHHHHHHHhhchhhHhhhhcCC-CCcHHHHHHHHHHH------------------HHH
Q 004939 82 LSEK-HDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRS-LPALNEVGLTCFRE------------------QID 141 (722)
Q Consensus 82 l~~~-~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~-~~~i~~l~l~lf~~------------------~I~ 141 (722)
.... +++.||+.|.++|.+|+.++.+|+++|+||||+|+++++ .++|+++|+.+||+ +|+
T Consensus 73 ~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~ 152 (354)
T 4a64_A 73 REDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIE 152 (354)
T ss_dssp GCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 4333 346899999999999999999999999999999999876 79999999999998 799
Q ss_pred HHhcCCccCHHHHHHHHHHHHHhcccchhchHHHHHHHHHHHHHHHHHHHHHhhHhcCChhHHHHHHHHHHHHHHHHHch
Q 004939 142 KEREGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSH 221 (722)
Q Consensus 142 ~~R~g~~i~~~~i~~~i~~~~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~ 221 (722)
++|.|+.||+.+|+++++||.++ .+|.+.||++||++|.+||+.+++.|+.++++++||++|+.++++|.+||..
T Consensus 153 ~eR~Ge~id~~lik~~i~ml~~L-----~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~ 227 (354)
T 4a64_A 153 RERNGEAIDRSLLRSLLSMLSDL-----QIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLIT 227 (354)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHT-----TCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999985 6899999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHH
Q 004939 222 YLHSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQ 301 (722)
Q Consensus 222 ~l~~~t~~~l~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~i~~ 301 (722)
||+++|.++|.++|+++||.+|++.|+. +|+..||++++.++|++||+||+++++|++.++..|++||++.|.+++.
T Consensus 228 yL~~~T~~~l~~~~e~~LI~~h~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~ 304 (354)
T 4a64_A 228 YLDQTTQKSLIATVEKQLLGEHLTAILQ---KGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVI 304 (354)
T ss_dssp TSCGGGHHHHHHHHHHHHTGGGHHHHHH---HHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCChhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999884 6999999999999999999999999999999999999999999999986
Q ss_pred hhHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhCCC
Q 004939 302 QAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAV 363 (722)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~I~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~N~~~ 363 (722)
+. ..+..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.++
T Consensus 305 ~~-------------~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 305 NP-------------EKDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp SC-------------CSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC-----
T ss_pred Cc-------------cchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 32 13457999999999999999999999999999999999999999863
No 7
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=100.00 E-value=7.7e-60 Score=512.62 Aligned_cols=341 Identities=21% Similarity=0.437 Sum_probs=309.4
Q ss_pred CCCCCHHHhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhcccccc
Q 004939 3 RKTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPSL 82 (722)
Q Consensus 3 ~~~~~fd~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~l~~~l~~~~~~~l 82 (722)
+++++||++|+.|++||++|+. + .+++..+||++|++||++|+++ +.+|++||+++++.++.|+...+.+..
T Consensus 10 ~~~~~~e~~W~~L~~ai~~I~~---~---~~~~~~s~e~LY~~vy~lc~~~--~~~~~~LY~~l~~~~~~~l~~~~~~~~ 81 (391)
T 2wzk_A 10 KGSLQFEDKWDFMHPIVLKLLR---Q---ESVTKQQWFDLFSDVHAVCLWD--DKGSSKIHQALKEDILEFIKQAQARVL 81 (391)
T ss_dssp --CCSHHHHHHHHHHHHHHHHH---T---CCCCHHHHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHh---C---CCCChHHHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999765 2 2588889999999999999985 237999999999999999998654433
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHhhchhhHhhhhcC--------CCCcHHHHHHHHHHH----------------
Q 004939 83 SEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARR--------SLPALNEVGLTCFRE---------------- 138 (722)
Q Consensus 83 ~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~--------~~~~i~~l~l~lf~~---------------- 138 (722)
....++.+|..|..+|.+|+.++.+|+++|+||||+||.+. ..++|+++|+.+||+
T Consensus 82 ~~~~~e~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~~i~~~l~~~ll~ 161 (391)
T 2wzk_A 82 SHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDSAMK 161 (391)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446789999999999999999999999999999999653 357999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHHHHhccc---chhchHHHHHHHHHHHHHHHHHHHHHhhHhcCChhHHHHHHHHHHHHH
Q 004939 139 QIDKEREGEQIDRALLKNVLDIFVEIGMG---QMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKE 215 (722)
Q Consensus 139 ~I~~~R~g~~i~~~~i~~~i~~~~~l~~~---~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~eE 215 (722)
+|+++|.|+.||+.+|+++++||+.+|.+ .+.+|.+.||++||++|.+||+.+++.|+.++++++||++|+.+|++|
T Consensus 162 lI~~eR~Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE 241 (391)
T 2wzk_A 162 LVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEE 241 (391)
T ss_dssp HHHHHHTTCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHccCccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999863 478999999999999999999999999999999999999999999999
Q ss_pred HHHHchhcC----CCchHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcHHHHHHHHHhhccCCCChHHHHHHHHHH
Q 004939 216 RDRVSHYLH----SSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQH 291 (722)
Q Consensus 216 ~~r~~~~l~----~~t~~~l~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~ 291 (722)
.+||..||+ ++|.++|.++|+++||.+|.+.|++ |+..||++++.+||++||+||+++++|++.|+..|++|
T Consensus 242 ~~R~~~yL~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~----~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~ 317 (391)
T 2wzk_A 242 EKRALRYLETRRECNSVEALMECCVNALVTSFKETILA----ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEH 317 (391)
T ss_dssp HHHHHHHSCCTTCCSHHHHHHHHHHHHHTGGGHHHHHT----THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHHH
T ss_pred HHHHHHHcCCcCCcchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHHHHH
Confidence 999999999 9999999999999999999999985 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhCCC
Q 004939 292 ITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAV 363 (722)
Q Consensus 292 i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~I~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~N~~~ 363 (722)
|++.|.+++....+. ...+|..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+.
T Consensus 318 I~~~G~~~v~~~~~~--------~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~ 381 (391)
T 2wzk_A 318 IISAGLADMVAAAET--------ITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDAT 381 (391)
T ss_dssp HHHHHHHHHHHHGGG--------TTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCch
Confidence 999999998653221 1246899999999999999999999999999999999999999999763
No 8
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.92 E-value=4.6e-26 Score=187.45 Aligned_cols=82 Identities=32% Similarity=0.689 Sum_probs=79.0
Q ss_pred hhhhhHHHhHHHhhhhhhhhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCcee
Q 004939 640 DERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 719 (722)
Q Consensus 640 ~e~~~~~~~v~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y~ 719 (722)
+|.+++.+.+.+||...|+||||||||++|+|+|++|+++|+++++++|+|++.+||+|||.||+||||+|+++| ++|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred chHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEE
Confidence 466778899999999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred ecC
Q 004939 720 YLA 722 (722)
Q Consensus 720 Yia 722 (722)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred eeC
Confidence 998
No 9
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.92 E-value=2.7e-26 Score=184.38 Aligned_cols=76 Identities=49% Similarity=0.772 Sum_probs=73.5
Q ss_pred HhHHHhhhhhhhhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCceeecC
Q 004939 647 EDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 722 (722)
Q Consensus 647 ~~v~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y~Yia 722 (722)
+.+++||...|+||||||||++|+|+|++|+++|+++++++|+|++.+||+|||.|||||||+|+++|+++|+|+|
T Consensus 2 k~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 2 SNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred cchhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999998
No 10
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.90 E-value=6.3e-26 Score=188.86 Aligned_cols=82 Identities=49% Similarity=0.748 Sum_probs=76.9
Q ss_pred hhhhHHHhHHHhhhhhhhhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCceee
Q 004939 641 ERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 720 (722)
Q Consensus 641 e~~~~~~~v~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y~Y 720 (722)
|...+.+.+.+||.+.|+||||||||++|+|+|++|+.+|+++++++|.|++.+||+|||.||+||||+|+++|+++|+|
T Consensus 11 e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y~Y 90 (92)
T 1iuy_A 11 ERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTY 90 (92)
T ss_dssp CCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEEE
T ss_pred HHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCeeEe
Confidence 34456677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 004939 721 LA 722 (722)
Q Consensus 721 ia 722 (722)
+|
T Consensus 91 ~A 92 (92)
T 1iuy_A 91 VA 92 (92)
T ss_dssp C-
T ss_pred cC
Confidence 98
No 11
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=3.1e-25 Score=187.14 Aligned_cols=81 Identities=56% Similarity=0.837 Sum_probs=76.6
Q ss_pred hhhhhHHHhHHHhhhhhhhhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCcee
Q 004939 640 DERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 719 (722)
Q Consensus 640 ~e~~~~~~~v~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y~ 719 (722)
+|...+.+.+.+||.+.|+||||||||++|+|+|++|+.+|+++++ |.|++.+||+|||.|||||||+|+++|+++|+
T Consensus 15 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIereYleR~~~d~~~y~ 92 (101)
T 2do7_A 15 EEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRDYMERDKENPNQYN 92 (101)
T ss_dssp CCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhhhHHhcCCCCCCeEE
Confidence 3445567789999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred ecC
Q 004939 720 YLA 722 (722)
Q Consensus 720 Yia 722 (722)
|+|
T Consensus 93 YlA 95 (101)
T 2do7_A 93 YIA 95 (101)
T ss_dssp ECC
T ss_pred Eec
Confidence 998
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=88.55 E-value=0.23 Score=38.36 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=47.0
Q ss_pred eeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCceeecC
Q 004939 661 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 722 (722)
Q Consensus 661 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y~Yia 722 (722)
-|...|.+|.+..++|-. .|..+.+++..+|+.|.+.|-|.---+|++.|+||+
T Consensus 12 Fi~yIk~~Kvv~LedLA~--------~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 12 FINYIKKSKVVLLEDLAF--------QMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHCSEECHHHHHH--------HHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHcCeeeHHHHHH--------HhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 356778888888887765 488999999999999999999999888999999984
No 13
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=85.52 E-value=0.78 Score=36.40 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=38.3
Q ss_pred HHHHhhcCC------CCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCC
Q 004939 562 ATLLLFNTS------DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKT 612 (722)
Q Consensus 562 ~ILl~fn~~------~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~ 612 (722)
.||....+. .+.|+.||++.+|++...+.+.|..|. +.++|.+.+.+..
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le--~kG~I~R~~ggr~ 62 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLH--DVGVLEKVNAGKG 62 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESCSSS
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCcEEecCCCCC
Confidence 455555443 789999999999999999999999996 5578887764443
No 14
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=85.19 E-value=1.6 Score=36.05 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=40.7
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCC
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPN 609 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~ 609 (722)
+.....||..+.+ +++|+.||++.+|++...+.++|..|. +.+++.....
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~~ 71 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLR--RDGLVTTRKE 71 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEECC
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEe
Confidence 3456677877776 789999999999999999999999996 4578876543
No 15
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=85.04 E-value=1.1 Score=36.78 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=41.8
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+..+..||..+.+.+++|..||++.+|++...+.++|..|. +.+++...
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~--~~glv~~~ 71 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMR--DEGLIDSQ 71 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 46788888888877789999999999999999999999996 45777654
No 16
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=84.82 E-value=0.41 Score=53.73 Aligned_cols=136 Identities=9% Similarity=0.099 Sum_probs=48.9
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhc---ccceeecCCCCCCCCCCCeEEecccCCCCCccee
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCA---KYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIK 633 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~---k~kiL~~~~~~~~i~~~~~~~~N~~f~~~~~~i~ 633 (722)
+..+..||..+.+...+|..+|++.+|++...+++.|..|... ..+++... ++.|.++..........
T Consensus 429 ~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~--------g~~y~L~~~~~~~~~~~- 499 (583)
T 3lmm_A 429 DYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH--------DGVWLLGNACREILRKV- 499 (583)
T ss_dssp CHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE--------TTEEEECHHHHHHHTSC-
T ss_pred chhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe--------CCEEEECHHHHHHhccc-
Confidence 3567788877777789999999999999999999999999741 14566654 25788877642211000
Q ss_pred ccCCChhhhhhH-HHhHHHhhhhhhhhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccC
Q 004939 634 IPLPPVDERKKI-VEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 712 (722)
Q Consensus 634 i~~~~~~e~~~~-~~~v~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~ 712 (722)
+ ......+ ...+ -....+..|+..+++++.++-.++.+.+ ..+...+.+.|..|+++|-|++.+
T Consensus 500 -~---~~~~~~~~~~~~---~~~~~~~~I~~~l~~~g~it~~di~~l~--------~ls~~qa~~~L~~Lv~~G~l~~~G 564 (583)
T 3lmm_A 500 -E---PSPFSPVRYLST---DQAELTNAAMLWLSEVGDLATSDLMAMC--------GVSRGTAKACVDGLVDEERVVAVG 564 (583)
T ss_dssp -C------------------------------------------------------------------------------
T ss_pred -c---cccccccccccC---ChhHHHHHHHHHHHHcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCcEEEeC
Confidence 0 0000000 0001 1234567899999999999888877643 346777899999999999999987
Q ss_pred CCCC
Q 004939 713 ENPN 716 (722)
Q Consensus 713 ~d~~ 716 (722)
..+.
T Consensus 565 ~gr~ 568 (583)
T 3lmm_A 565 GGRS 568 (583)
T ss_dssp ----
T ss_pred CCCc
Confidence 6544
No 17
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=83.90 E-value=1 Score=36.99 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=42.4
Q ss_pred EEEcHHHHHHHHhhcC--CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 554 LIVSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 554 l~~s~~Q~~ILl~fn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
..++..|..||....+ .++++..||++.++++...+.++|..|.. -+++.+
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~--kglIkr 68 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIKA 68 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEE
Confidence 4567789999988776 56899999999999999999999999963 356653
No 18
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=83.65 E-value=1.3 Score=35.15 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=36.6
Q ss_pred HHHHHHhhcCCC---CcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 560 QAATLLLFNTSD---RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 560 Q~~ILl~fn~~~---~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
+..||.++.+.. .+|..||++.+|++...+.++|..|. +.+++...+
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~--~~G~I~~~g 65 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHH--HHTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecC
Confidence 355665555444 89999999999999999999999996 446676543
No 19
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=82.94 E-value=1.3 Score=43.82 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=43.2
Q ss_pred EEcHHHHHHHHhhcCC--CCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 555 IVSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 555 ~~s~~Q~~ILl~fn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
.+|..|..||..+.+. +++|..||++.++++...+.+.|..|. +.+++.+.
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe--~~G~i~R~ 83 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLV--KHSYISKV 83 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHH--HTTSCEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEec
Confidence 3678999999988663 589999999999999999999999996 45777765
No 20
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=81.42 E-value=1.3 Score=36.90 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~--~~glv~~~ 67 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLL--KRGFVRRE 67 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 477899999888776789999999999999999999999997 35677653
No 21
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=81.03 E-value=2.8 Score=34.42 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=43.0
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEeccc
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 624 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~ 624 (722)
+..+..||.++ .+.+|+.||++.+|++...+.++|..|. +.+++.+.. +.|.++..
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~--~~Glv~~~~--------g~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLE--AGFCIERVG--------ERWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET--------TEEEECTT
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEC--------CEEEECCC
Confidence 34566777767 4579999999999999999999999996 457776542 26777653
No 22
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=81.01 E-value=3.3 Score=32.80 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=35.5
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 562 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 562 ~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
.||..+.+.+++|..||++.+|++...+.+.|..|.. .+++...
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~--~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEK--AGMVQRS 47 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHH--HTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 4565665557899999999999999999999999973 4677643
No 23
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=80.87 E-value=2.2 Score=37.82 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=44.3
Q ss_pred EEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 554 LIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 554 l~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
+.+|..|..||..+...+ +|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 34 ~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~--~~Glv~r~~ 85 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLV--KEGMLETSK 85 (146)
T ss_dssp SCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred cCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeEecc
Confidence 346889999999998888 9999999999999999999999997 457887653
No 24
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=80.82 E-value=1.5 Score=38.76 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=44.8
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
+|..|..||..+...+++|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 34 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 84 (140)
T 3hsr_A 34 LTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLE--KKDYVVRTR 84 (140)
T ss_dssp CCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCeEecC
Confidence 578899999999888899999999999999999999999997 457777653
No 25
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=80.63 E-value=1.8 Score=38.43 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=44.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
+|..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 79 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLA--GQGLIEWQE 79 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 478899999988777789999999999999999999999997 457777653
No 26
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=79.02 E-value=2.5 Score=33.63 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=39.6
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCCHH-HHHHHHhHhhhcccceeecCC
Q 004939 558 TYQAATLLLFNTSDRLSYSEIMTQLNLTHD-DLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 558 ~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~-~l~~~L~~L~~~k~kiL~~~~ 608 (722)
..+--||.++...++.|..+|++.+|++.. .+.++|..|- +-+++.+.+
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le--~eGlV~~~~ 60 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDME--RQGDVYRQG 60 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHH--HTTSEEEEC
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHH--HCCCEEecC
Confidence 446667777777789999999999999998 9999999996 456666543
No 27
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=78.86 E-value=3.1 Score=33.25 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCC---CcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEecc
Q 004939 560 QAATLLLFNTSD---RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 623 (722)
Q Consensus 560 Q~~ILl~fn~~~---~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~ 623 (722)
+..||.++.+.. .+|..||++.+|++...+.++|..|. +.+++.+.+. ....|.+..
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le--~~G~I~~~g~-----~~~~W~i~~ 71 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEAG-----TPPLWKIAV 71 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESS-----SSCEEEEC-
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecCC-----CCCeeEEeC
Confidence 555666665544 89999999999999999999999996 3466665431 124566544
No 28
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=78.83 E-value=1.9 Score=34.24 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=36.5
Q ss_pred HHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 563 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 563 ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
|+.+.++.+.++++||++.+++++..+++-|..|.. .+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~--~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLES--MGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 566678888999999999999999999999999973 4566665
No 29
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=78.71 E-value=1.5 Score=38.91 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=41.2
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 555 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 555 ~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
.+|..|+.||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 85 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELE--GRNLVRRER 85 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHH--HTTSEEC--
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 3578899999998888899999999999999999999999997 457777653
No 30
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=78.63 E-value=3 Score=37.38 Aligned_cols=50 Identities=6% Similarity=0.143 Sum_probs=43.8
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+...+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le--~~Glv~r~ 90 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMD--ARGLVTRV 90 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEec
Confidence 477899999999888899999999999999999999999997 45677654
No 31
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=78.56 E-value=2.7 Score=36.41 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=39.4
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
+..+..||..+...+++|+.||++.+|++...+-++|..|. ..+++....
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~--~~Glv~~~~ 90 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLY--KQGVVNFRK 90 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC-
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEE
Confidence 34556677777655679999999999999999999999996 457776543
No 32
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=78.34 E-value=2.2 Score=37.90 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=44.0
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 555 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 555 ~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
.++..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Glv~r~ 87 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE--EKKYIEVN 87 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC-
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 3678899999988888899999999999999999999999997 35777765
No 33
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=77.85 E-value=2.5 Score=33.78 Aligned_cols=44 Identities=11% Similarity=0.254 Sum_probs=34.1
Q ss_pred HHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 561 AATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 561 ~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
..||.++.... .|+.||++.+|++...+.++|..|. +.+++.+.
T Consensus 20 ~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le--~eG~I~~~ 63 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQ--RSAMVYSS 63 (82)
T ss_dssp HHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEEC
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeC
Confidence 34444444544 9999999999999999999999996 34677654
No 34
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=77.53 E-value=4.6 Score=33.44 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=43.7
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEecc
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 623 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~ 623 (722)
+.....||..+.+ ++.|+.||++.+|++...+.++|..|. ..+++.....|. ...|.++.
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~~g~----~~~y~l~~ 81 (102)
T 3pqk_A 22 HPVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLR--ESGIVETRRNIK----QIFYRLTE 81 (102)
T ss_dssp SHHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHH--HTTSEEEECSSS----CCEEEECS
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeCC----EEEEEECc
Confidence 3445566766655 569999999999999999999999996 457887654432 23465554
No 35
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=77.44 E-value=3.2 Score=32.46 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=35.7
Q ss_pred HHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 563 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 563 ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
++..+.+++..|..+||..+|++...+.++|-+|. +.+.+.+.+
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~--kkG~V~~~~ 63 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQ--KEDTVKMVP 63 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred HHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHH--HCCCEecCC
Confidence 35567777779999999999999999999999996 445565544
No 36
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=77.43 E-value=2.1 Score=37.26 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=42.3
Q ss_pred EEcHHHHHHHHhhcCCCC--cCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 555 IVSTYQAATLLLFNTSDR--LSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 555 ~~s~~Q~~ILl~fn~~~~--~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
.++..|..||..+.+.+. +|..||++.+|++...+.++|..|. +.+++.+.
T Consensus 23 gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~--~~GlV~r~ 75 (123)
T 3r0a_A 23 NLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLH--EKEILQRS 75 (123)
T ss_dssp TCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEee
Confidence 457889999987765554 9999999999999999999999997 45777653
No 37
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=77.22 E-value=2.6 Score=37.19 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhh-cCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLF-NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~f-n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+ ...+++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~--~~glv~r~ 85 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLE--SQGLVRRL 85 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH--HCCCeeec
Confidence 466788899888 777889999999999999999999999997 35677654
No 38
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=77.11 E-value=2 Score=34.82 Aligned_cols=43 Identities=7% Similarity=0.135 Sum_probs=36.4
Q ss_pred HHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 563 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 563 ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
|+.+.++.+.++++||++.+++++..+++-|..|. +.+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le--~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERME--AMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHH--TTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 56667888899999999999999999999999997 34566654
No 39
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=76.95 E-value=2 Score=38.47 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=43.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
+|..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 39 lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 89 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLE--QSGWVKRER 89 (149)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEC--
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeeCC
Confidence 578899999988877899999999999999999999999997 457887653
No 40
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=76.81 E-value=3.3 Score=36.54 Aligned_cols=49 Identities=8% Similarity=0.114 Sum_probs=42.2
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+|..|+.||..+. .+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~ 83 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLE--EMGLVVRV 83 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHH--HCCCEEee
Confidence 4778999998888 7899999999999999999999999997 34677654
No 41
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=76.57 E-value=1.6 Score=38.57 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=44.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
+|..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 85 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLL--RKELIVREI 85 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCeeccC
Confidence 478899999888777899999999999999999999999997 457777653
No 42
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=76.09 E-value=2 Score=37.46 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCC--CCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 556 VSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
+|..|..||..+... +++|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 35 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 87 (127)
T 2frh_A 35 ISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILS--QEDYFDKKR 87 (127)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHH--HTTSSCCBC
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecC
Confidence 577899888877655 789999999999999999999999997 457777653
No 43
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=75.97 E-value=3.1 Score=33.05 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=42.9
Q ss_pred EEcHHHHHHHHhhcCC--CCcCHHHHHHHh-----CCCHHHHHHHHhHhhhcccceeecC
Q 004939 555 IVSTYQAATLLLFNTS--DRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 555 ~~s~~Q~~ILl~fn~~--~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
.++.-+..||..+.+. ..+|.+||++.+ +++...+-+.|..|. +.+++.+.
T Consensus 14 ~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~--~~Glv~~~ 71 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFD--DAGIVTRH 71 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred CcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH--HCCCeEEE
Confidence 4567788899888765 589999999999 999999999999997 45677654
No 44
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=75.63 E-value=2.7 Score=37.61 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
++..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLI--SLGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 578899999888877889999999999999999999999997 4577766
No 45
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=74.82 E-value=2.5 Score=37.12 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=42.2
Q ss_pred EcHHHHHHHHhhcCCC--CcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSD--RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~--~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+|..|..||..+...+ ++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Gli~r~ 80 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLE--RKKLIYRY 80 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHH--HCCCEeec
Confidence 5678999998776654 89999999999999999999999997 45777664
No 46
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=74.66 E-value=3.1 Score=37.08 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+...+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le--~~Glv~r~ 87 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQ--RAGLIERR 87 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeeec
Confidence 577899999988877789999999999999999999999997 35677654
No 47
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=74.56 E-value=1.5 Score=34.76 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=37.5
Q ss_pred heeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhccc
Q 004939 660 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 711 (722)
Q Consensus 660 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~ 711 (722)
.|...++.++.++.++|.. .|..+...|.+-|+.|.++|+|+|.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~--------~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQ--------TLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHH--------HTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4566677788888877765 4899999999999999999999997
No 48
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=74.48 E-value=3.2 Score=36.20 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|+.||..+...+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~--~~glv~~~ 76 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLE--ESGFIERE 76 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 477899999888877899999999999999999999999997 34677654
No 49
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=74.44 E-value=2.5 Score=37.04 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+|..|+.||......+++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~--~~gli~r~ 81 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLV--CKGWVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHH--HCCCEEec
Confidence 467899999888777789999999999999999999999997 34677654
No 50
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=74.31 E-value=3.3 Score=36.30 Aligned_cols=50 Identities=10% Similarity=0.233 Sum_probs=41.8
Q ss_pred EcHHHHHHHHhhcCCC--CcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSD--RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~--~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+|..|..||..+...+ ++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le--~~Gli~r~ 83 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRME--IKKLLYRK 83 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHH--HCCCEEee
Confidence 4678998888777655 89999999999999999999999997 34677654
No 51
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=74.27 E-value=3.3 Score=37.42 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 47 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~glv~r~ 96 (162)
T 2fa5_A 47 MAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLL--ERGFIRRE 96 (162)
T ss_dssp CCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC-
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeee
Confidence 577899999888877899999999999999999999999997 45777654
No 52
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=74.26 E-value=2.3 Score=38.60 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=43.6
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~ 93 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLL--ANGWIEKA 93 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCeEec
Confidence 467899999988877899999999999999999999999997 45777764
No 53
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=74.22 E-value=2.9 Score=34.42 Aligned_cols=50 Identities=6% Similarity=0.065 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHH----HHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEI----MTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei----~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+.+.+++|..+| ++.++++...+.+.|..|. +.+++.+.
T Consensus 6 lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le--~~gli~r~ 59 (99)
T 1tbx_A 6 FFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLI--QEGFVKER 59 (99)
T ss_dssp SBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 56789999998888889999999 8999999999999999996 34677654
No 54
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=72.89 E-value=2.9 Score=46.31 Aligned_cols=135 Identities=11% Similarity=0.133 Sum_probs=86.3
Q ss_pred HHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEecccCCCCCcceeccCCChhhh
Q 004939 563 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDER 642 (722)
Q Consensus 563 ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~f~~~~~~i~i~~~~~~e~ 642 (722)
|.-.+...+.+|+.+|...|+++...++..|-.|+ ..+++.-.+.+. +...|.+|.+ .-..+++.|.
T Consensus 24 V~~~Ll~~G~ltL~~I~~~t~L~~~~Vk~~L~vLI--Qh~lV~~~~~~~---~~~~Y~~~~~--~il~~lR~pk------ 90 (534)
T 2xub_A 24 IGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLV--QHNLVSYQVHKR---GVVEYEAQCS--RVLRMLRYPR------ 90 (534)
T ss_dssp HHHHHHHHCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEEETT---TEEEEEECHH--HHHGGGGHHH------
T ss_pred HHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHHHHH--hcCCeeEEeCCC---CcEEEEEChh--hHHHHHhhHH------
Confidence 33333345789999999999999999999999997 456665332110 1234555432 1111222220
Q ss_pred hhHHHhHHHhhhhhhhhheeeccccCccCChhhHHHHHHHHhccC----CCCChhHHHHHHHhhhhhhhhcccCC
Q 004939 643 KKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRM----FKPDIKAIKKRMEDLITRDYLERDKE 713 (722)
Q Consensus 643 ~~~~~~v~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~----F~~~~~~ik~~Ie~Liereyl~r~~~ 713 (722)
.-. ..+.+--..-|.|+-.+=..+.++.++|+..+...+... =.++...+...+..|++.+||.|.+.
T Consensus 91 --~l~-~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 91 --YIY-TTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp --HHH-HHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred --HHH-HHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCC
Confidence 000 111122223466777777789999999999988765321 12578899999999999999999874
No 55
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=72.82 E-value=2.5 Score=38.34 Aligned_cols=51 Identities=12% Similarity=0.088 Sum_probs=44.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
++..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r~~ 101 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLV--DEGLAARSI 101 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeeC
Confidence 467899999888877799999999999999999999999997 457887653
No 56
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=72.31 E-value=3.1 Score=36.50 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+...+++|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 29 l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~--~gli~~~ 78 (142)
T 3bdd_A 29 ISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEE--SGYIIRK 78 (142)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEec
Confidence 5778999998887777899999999999999999999999973 4676654
No 57
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=72.29 E-value=3.2 Score=37.09 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+...+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~ 94 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQ--AAGLVTRT 94 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHH--HCCCEeec
Confidence 477899999888777889999999999999999999999997 34677654
No 58
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=71.95 E-value=8.9 Score=34.88 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=41.3
Q ss_pred HHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEeccc
Q 004939 560 QAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 624 (722)
Q Consensus 560 Q~~ILl~fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~ 624 (722)
.+.+.+.-+. ...+|.++|++.+|+|...+.+.|..|. +.+++.... | .++.|.+..+
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~--~aGlv~s~r-G----~~GGy~Lar~ 89 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLR--NAGIVKSIR-G----AHGGYVLNGD 89 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC-S----TTCEEEECSC
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCeEEEec-C----CCCceEecCC
Confidence 4444444443 3479999999999999999999999996 567876432 1 2456777553
No 59
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=71.91 E-value=3.6 Score=34.10 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=39.4
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..+|+.+-. .+++|..||++.+|++...+.++|..|. +.+++.+.
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~--~~g~v~~~ 69 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLI--ELGLVVRT 69 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEee
Confidence 35667777655433 6789999999999999999999999996 35677654
No 60
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=71.83 E-value=3.4 Score=37.79 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=42.8
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 556 VSTYQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
++..|+.||..+.. .+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~GlV~r~~ 102 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLE--DKGLISRQT 102 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEeeC
Confidence 46789999988876 5679999999999999999999999997 457887653
No 61
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=71.80 E-value=3.4 Score=36.52 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+.. .+++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 33 l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le--~~glv~r~ 83 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELE--RGGLIVRH 83 (147)
T ss_dssp HHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH--HCCCEeeC
Confidence 57789999988877 7789999999999999999999999997 34677654
No 62
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=71.56 E-value=3.1 Score=32.95 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=43.1
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhC----CCHHHHHHHHhHhhhcccceeecCC
Q 004939 555 IVSTYQAATLLLFNTSDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 555 ~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
.++..|..||..+.+.+++|..||++.++ ++...+.+.|..|. +.+++.+.+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~--~kGlv~r~~ 61 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLI--KKGALNHHK 61 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHH--HCCCeEEEe
Confidence 35788999998887778999999999996 68899999999997 347777653
No 63
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=71.30 E-value=2 Score=37.56 Aligned_cols=50 Identities=12% Similarity=0.288 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+...+++|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~--~gli~r~ 80 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKR--DGYVMTE 80 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHH--CCCeeec
Confidence 5778999998888778899999999999999999999999973 4677654
No 64
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=71.05 E-value=2.8 Score=38.41 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=43.2
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 43 lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 92 (168)
T 2nyx_A 43 ITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLV--GAELIDRL 92 (168)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEec
Confidence 578899999888777789999999999999999999999997 45677654
No 65
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=70.97 E-value=3.6 Score=35.91 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+...+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 36 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~--~~glv~r~ 85 (140)
T 2nnn_A 36 LTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLD--KRGLIQRS 85 (140)
T ss_dssp CCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHH--HTTCEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 567899999888777789999999999999999999999997 34666653
No 66
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=70.64 E-value=2 Score=34.08 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=43.2
Q ss_pred hheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCceeec
Q 004939 659 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 721 (722)
Q Consensus 659 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y~Yi 721 (722)
..|.+++-..+.++..+|...+-.. -..+...+...|+.|.++|||+|..+ ...+.|-
T Consensus 12 ~~vL~~L~~~~~~t~~ei~~~l~~~----~~~s~~Tv~~~l~rL~~kGlv~r~~~-gr~~~y~ 69 (82)
T 1p6r_A 12 LEVMKVIWKHSSINTNEVIKELSKT----STWSPKTIQTMLLRLIKKGALNHHKE-GRVFVYT 69 (82)
T ss_dssp HHHHHHHHTSSSEEHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhc----CCccHHHHHHHHHHHHHCCCeEEEec-CCEEEEE
Confidence 3344555456788999998877532 23578899999999999999999875 3577774
No 67
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=70.61 E-value=2.8 Score=36.99 Aligned_cols=50 Identities=10% Similarity=0.122 Sum_probs=42.3
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|+.||..+...+++|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~--~gli~r~ 76 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEE--QGFIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHH--CCCEEee
Confidence 4677898998887777899999999999999999999999973 4677654
No 68
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=70.55 E-value=8.3 Score=30.56 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=32.3
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhh
Q 004939 562 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 598 (722)
Q Consensus 562 ~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 598 (722)
.|--++++.+.+|+++|++.+|++.+++..++--|..
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaR 48 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLAR 48 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 4556677777999999999999999999999999975
No 69
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=70.45 E-value=2.5 Score=35.66 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=36.1
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 560 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 560 Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+..||..+.+ +++|+.||++.+|++...+.++|..|. +.+++...
T Consensus 27 r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~ 71 (108)
T 2kko_A 27 RLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALK--SGGLVEAR 71 (108)
T ss_dssp THHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 4456666654 678999999999999999999999996 45777654
No 70
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=70.33 E-value=3.7 Score=36.14 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=42.8
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|+.||..+...+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~--~~glv~r~ 80 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLE--ADGYLTRT 80 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHH--HCCCeeec
Confidence 577899999888777789999999999999999999999997 34677654
No 71
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=70.23 E-value=4 Score=37.72 Aligned_cols=66 Identities=8% Similarity=0.094 Sum_probs=42.9
Q ss_pred cCCceEEEEeEecCeeEEEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 536 YSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 536 ~~lg~~~i~~~~~~~~~~l~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
++.+++.+...- .-...++..+..||..+.....+|+.||++.+|++...+.+.|..|.. .+++..
T Consensus 8 ~~~~~~~~~~~~---~m~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~--~G~I~~ 73 (171)
T 2e1c_A 8 HHHSSGLVPRGS---HMRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE--SGVIKK 73 (171)
T ss_dssp -------------------CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSSCC
T ss_pred cccccccccccc---ccccCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEe
Confidence 344555554322 122356788989998888778999999999999999999999999963 456653
No 72
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=70.13 E-value=2.7 Score=35.04 Aligned_cols=60 Identities=15% Similarity=0.276 Sum_probs=43.5
Q ss_pred hhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCceeecC
Q 004939 658 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 722 (722)
Q Consensus 658 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y~Yia 722 (722)
+..|.+++-..+.++..+|...+.. .-.++..-|...|+.|.++|||+|..+ ...|.|-|
T Consensus 37 e~~VL~~L~~~~~~t~~eL~~~l~~----~~~~s~sTVt~~L~rLe~KGlV~R~~~-gR~~~Y~p 96 (99)
T 2k4b_A 37 ELIVMRVIWSLGEARVDEIYAQIPQ----ELEWSLATVKTLLGRLVKKEMLSTEKE-GRKFVYRP 96 (99)
T ss_dssp CSHHHHHHHHHSCEEHHHHHHTCCG----GGCCCHHHHHHHHHHHHHTTSCEEEEE-TTEEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHhc----ccCCCHhhHHHHHHHHHHCCCEEEEeC-CCEEEEEE
Confidence 4455555555667777777765422 123578899999999999999999874 56888865
No 73
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=70.10 E-value=3.4 Score=36.67 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+...+++|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~--~Glv~r~ 89 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMER--NGLVARV 89 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHH--CCCeeec
Confidence 4678999998887777899999999999999999999999973 4676653
No 74
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=70.00 E-value=3.6 Score=36.89 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+...+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~Gli~r~ 91 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLE--KRGLVVRE 91 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 577899999888776789999999999999999999999997 34677654
No 75
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=69.95 E-value=9.4 Score=33.98 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=39.4
Q ss_pred HHHHHhhcCC-CCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEecc
Q 004939 561 AATLLLFNTS-DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 623 (722)
Q Consensus 561 ~~ILl~fn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~ 623 (722)
+.+.+.-+.. ..+|.++|++.+|+|...+.+.|..|. +.+++.... | .++.|.+..
T Consensus 16 ~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~--~aGlv~s~r-G----~~GGy~Lar 72 (143)
T 3t8r_A 16 LMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLR--NAGLIRSVR-G----AKGGYQLRV 72 (143)
T ss_dssp HHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECS-S----SSSEEEESS
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCEEEecC-C----CCCCeeecC
Confidence 3333433333 479999999999999999999999996 567776432 1 245677654
No 76
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=69.93 E-value=5.7 Score=35.01 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=38.6
Q ss_pred EcHHHHHHHHhhc-CCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFN-TSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn-~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..+|..+. ..+++|..||++.+|++...+.+.|..|. +.+++.+.
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~--~~G~v~r~ 74 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLE--ELGFVRKV 74 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 3456666654442 34689999999999999999999999997 45777764
No 77
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=69.74 E-value=8.5 Score=29.53 Aligned_cols=57 Identities=7% Similarity=0.148 Sum_probs=42.5
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEecccCC
Q 004939 560 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFT 626 (722)
Q Consensus 560 Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~f~ 626 (722)
--.|.-+|.+..-+|+.+|.+.|+-|+..|+.+|..++ ++.+.+. -.+.|.+-+.|.
T Consensus 10 ~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia-----~~~k~g~-----~~~~weLKpEyr 66 (69)
T 1bby_A 10 LDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIG-----VQNVKGI-----HKNTWELKPEYR 66 (69)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHC-----CCBCCTT-----CCCBBCCCCSSC
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHH-----HHHcCCC-----CCCeeeCcHHHh
Confidence 34566789999999999999999999999999998774 5555432 134566655554
No 78
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=69.61 E-value=4.3 Score=33.98 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=38.1
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+..+..||..+. .+++|+.||++.+|++...+.++|..|. +.+++...
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAK 72 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 345666776665 4578999999999999999999999996 45777654
No 79
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=69.38 E-value=1.7 Score=35.22 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=37.1
Q ss_pred heeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccC
Q 004939 660 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 712 (722)
Q Consensus 660 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~ 712 (722)
.|...++.++.++.++|.. .|..+...|.+-|+.|.++|+|+|..
T Consensus 6 ~Il~~L~~~g~vsv~eLA~--------~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSA--------RLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHH--------HTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3556667777777777665 48999999999999999999999974
No 80
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=69.13 E-value=3.9 Score=36.24 Aligned_cols=52 Identities=12% Similarity=0.090 Sum_probs=41.4
Q ss_pred EEEEcHHHHHHHHhhcC-----CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 553 ELIVSTYQAATLLLFNT-----SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 553 ~l~~s~~Q~~ILl~fn~-----~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
++-+|.-++.+|+.+-. ....|.++||+.+|++...+.+.|+.|.. -++|..
T Consensus 27 ~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~--KGlI~i 83 (135)
T 2v79_A 27 QLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ--KGFLFI 83 (135)
T ss_dssp HHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH--HTSCEE
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 45678888888876543 35689999999999999999999999984 356654
No 81
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=69.09 E-value=5 Score=33.03 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=43.4
Q ss_pred EEEcHHHHHHHHhhcCCCCcCHHHHHH-HhCCCHHHHHHHHhHhhhcccceee
Q 004939 554 LIVSTYQAATLLLFNTSDRLSYSEIMT-QLNLTHDDLVRLLHSLSCAKYKILL 605 (722)
Q Consensus 554 l~~s~~Q~~ILl~fn~~~~~t~~ei~~-~t~i~~~~l~~~L~~L~~~k~kiL~ 605 (722)
..++.-|+.||.........|..+|++ ..+++...+-+++.+|. +.+++.
T Consensus 12 ~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~--r~GlVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLI--KKGLVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHH--TTTSEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHH--HCCCee
Confidence 346788999999887777999999999 99999999999999997 456765
No 82
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=69.05 E-value=2.9 Score=37.40 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+...+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~ 84 (155)
T 1s3j_A 35 VTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLE--QKNLIART 84 (155)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeec
Confidence 577899999888877789999999999999999999999997 34677654
No 83
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=68.99 E-value=2.5 Score=37.29 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+...+++|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~--~gli~r~ 84 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQ--VDLIKRE 84 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHH--CCCEEee
Confidence 5778999998888777899999999999999999999999973 4677654
No 84
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=68.92 E-value=5.5 Score=36.41 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=35.7
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 559 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 559 ~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
+++.+.+.-+....+|.++|++.+|+|...|.+.|..|. +.+++..
T Consensus 15 lr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~--~aGlv~s 60 (162)
T 3k69_A 15 VHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLH--KHGYLTG 60 (162)
T ss_dssp HHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHH--HTTSSEE
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEe
Confidence 344444544555679999999999999999999999996 5677654
No 85
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=68.78 E-value=4.2 Score=36.67 Aligned_cols=50 Identities=20% Similarity=0.255 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|+.||..+...+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~Gli~r~ 99 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQ--ADGLVRRE 99 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEec
Confidence 577899999888877889999999999999999999999997 34677653
No 86
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=68.74 E-value=2.5 Score=38.22 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+|..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~ 97 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLV--DEGYVFRQ 97 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 456788888888777889999999999999999999999997 45777654
No 87
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=68.57 E-value=3.6 Score=33.68 Aligned_cols=48 Identities=15% Similarity=0.287 Sum_probs=39.4
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
+..+..||..+...+++|+.+|++.+|++...+.++|..|. +.+++.+
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~--~~gli~~ 62 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLE--RNGLVKT 62 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 56677888777655689999999999999999999999996 3466654
No 88
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=68.48 E-value=4.6 Score=35.93 Aligned_cols=51 Identities=12% Similarity=0.255 Sum_probs=41.1
Q ss_pred EcHHHHHHHHhhc-CCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 556 VSTYQAATLLLFN-TSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 556 ~s~~Q~~ILl~fn-~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
+|..|..||..+. ..+++|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~Glv~r~~ 88 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELE--ERGLVVRTL 88 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH--TTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEeeC
Confidence 4678999998775 34578999999999999999999999997 457777653
No 89
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=68.32 E-value=3.7 Score=34.68 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=38.5
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+..+..||..+ ..+++|+.||++.+|++...+.++|..|. +.+++...
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~--~~gli~~~ 67 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQ--ACGLVESV 67 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeeEE
Confidence 35667777777 44579999999999999999999999996 45677654
No 90
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=67.98 E-value=6.8 Score=34.97 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=40.6
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
+..+..||..+.++..+|+.||++.+|++...+.+.|..|. +.+++.+
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 49 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLE--KDGVIKG 49 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HTTSSCC
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEE
Confidence 34677788888888899999999999999999999999996 3567654
No 91
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=67.88 E-value=3.4 Score=36.57 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~--~~glv~r~ 87 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRME--QQGLITRK 87 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHH--HHTSEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHH--HCCCEEec
Confidence 477899999888777789999999999999999999999997 34677654
No 92
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=67.83 E-value=8.6 Score=34.45 Aligned_cols=57 Identities=9% Similarity=0.046 Sum_probs=39.7
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEeccc
Q 004939 560 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 624 (722)
Q Consensus 560 Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~ 624 (722)
.+.+.+.-+....+|.++|++.+|+|...+.+.|..|. +.+++.... +++.|.+..+
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~--~~Glv~s~r------G~GGy~L~~~ 74 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLK--QAGFVYVNR------GPGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEcc------CCCceEeCCC
Confidence 34444444444579999999999999999999999997 567776432 1345666543
No 93
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=67.38 E-value=2.3 Score=37.84 Aligned_cols=50 Identities=8% Similarity=0.141 Sum_probs=36.4
Q ss_pred EcHHHHHHHHhhcCC--CCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+|..|..||..+... +++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~ 90 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLE--KKGYIERR 90 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHH--HTTSBCCC
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEee
Confidence 567899998877655 789999999999999999999999997 45777765
No 94
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=67.30 E-value=3.4 Score=36.45 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=42.5
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 555 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 555 ~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
.+|..|..||......+. |..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le--~~Glv~r~ 83 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLE--AKGLVRRI 83 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHH--HCCCEEec
Confidence 357789999988887777 999999999999999999999997 34777654
No 95
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=67.07 E-value=4 Score=35.71 Aligned_cols=50 Identities=10% Similarity=0.156 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|+.||..+...+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le--~~glv~r~ 83 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLE--RDGIVRRW 83 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEee
Confidence 577899999888777789999999999999999999999997 34676654
No 96
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=67.02 E-value=3.2 Score=31.74 Aligned_cols=45 Identities=9% Similarity=0.148 Sum_probs=34.8
Q ss_pred HHHHHHHhhcCC-CCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceee
Q 004939 559 YQAATLLLFNTS-DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 605 (722)
Q Consensus 559 ~Q~~ILl~fn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~ 605 (722)
..-.||.++.+. ..+|..||++.+|++...+.+.|..|.. .+++.
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~--~G~I~ 56 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKK--EDRVS 56 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHH--TTSEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEe
Confidence 344577667543 4799999999999999999999999964 34444
No 97
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=66.58 E-value=6.1 Score=35.34 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=41.3
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
++..+..||..+.+.+.+|+.||++.+|++...+.+.|..|. +.+++.+
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLE--SRGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 466788888888877889999999999999999999999996 3466653
No 98
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=66.52 E-value=4 Score=36.44 Aligned_cols=51 Identities=20% Similarity=0.306 Sum_probs=41.1
Q ss_pred EcHHHHHHHHhh--cCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 556 VSTYQAATLLLF--NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 556 ~s~~Q~~ILl~f--n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
+|..|..||..+ ++.+++|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le--~~Glv~r~~ 85 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLV--RSGLVAKRP 85 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--hCCCEEEee
Confidence 467788777655 445679999999999999999999999997 457777653
No 99
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=66.49 E-value=7.1 Score=33.42 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=38.7
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+..+..||..+.+ ++.++.||++.+|++...+.++|..|. ..+++...
T Consensus 20 ~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~ 67 (118)
T 2jsc_A 20 DPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLR--GCGLVVAT 67 (118)
T ss_dssp SHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHT--TTTSEEEE
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEE
Confidence 4566777777764 468999999999999999999999996 45777654
No 100
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=65.73 E-value=4.6 Score=37.80 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhhcC--CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+|..|..||..+.. .+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 90 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLE--KNGYVDVI 90 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEec
Confidence 67889999987764 5689999999999999999999999997 45777764
No 101
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=65.69 E-value=4.4 Score=35.85 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=24.6
Q ss_pred HhccCCCCChhHHHHHHHhhhhhhhhcc
Q 004939 683 QLSRMFKPDIKAIKKRMEDLITRDYLER 710 (722)
Q Consensus 683 ~l~~~F~~~~~~ik~~Ie~Liereyl~r 710 (722)
.++++...++..|.+.|..|+++|||+|
T Consensus 56 ~LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 56 QLQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3445678899999999999999999999
No 102
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=64.93 E-value=8.7 Score=34.41 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=42.1
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 556 VSTYQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
+|..|+.||..... .+..+..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le--~~GlV~R~~ 80 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE--EKGLITRHT 80 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH--hCCCeEeec
Confidence 57889999987764 4568889999999999999999999997 457777653
No 103
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=64.69 E-value=3.8 Score=36.50 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=42.2
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
+|..|..||..+ ..+++|..+|++.+|++...+.+.+..|. +.+++.+
T Consensus 36 lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r 83 (151)
T 3kp7_A 36 ISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLL--NAELVKL 83 (151)
T ss_dssp CCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHH--HTTSEEC
T ss_pred CCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 578899999888 77899999999999999999999999997 4577775
No 104
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=63.79 E-value=3.7 Score=36.98 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhh-cCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLF-NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~f-n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|+.||..+ ...+++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le--~~Gli~r~ 95 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLI--KDGMVVKA 95 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHH--HHTSEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEee
Confidence 578899999888 567789999999999999999999999997 45777764
No 105
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=63.54 E-value=14 Score=32.94 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=38.7
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEeccc
Q 004939 560 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 624 (722)
Q Consensus 560 Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~ 624 (722)
.+.+.+.-+.. . |.++|++.+++|...|.+.|..|. +.+++.... +++.|.+..+
T Consensus 13 ~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~--~aGlv~s~r------G~GGy~Lar~ 67 (145)
T 1xd7_A 13 HILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLK--KADILTSRA------GVPGASLKKD 67 (145)
T ss_dssp HHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECCS------SSSSCEESSC
T ss_pred HHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHH--HCCceEeec------CCCCceecCC
Confidence 33444444443 5 999999999999999999999996 568886432 1345666543
No 106
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=63.42 E-value=16 Score=31.56 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=35.4
Q ss_pred CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEeccc
Q 004939 570 SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 624 (722)
Q Consensus 570 ~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~ 624 (722)
...+|..+|++.+|+|...+.+.|..|. +.+++.... | .++.|.+..+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~--~~Glv~~~~-g----~~ggy~L~~~ 71 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLR--NAGLVKSIR-G----AYGGYVLGSE 71 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEecC-C----CCCceEeCCC
Confidence 4579999999999999999999999997 457776432 1 1345766543
No 107
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=63.36 E-value=4.7 Score=38.48 Aligned_cols=51 Identities=14% Similarity=0.020 Sum_probs=43.7
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
++..|..||..+...+++|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le--~~GlV~r~~ 96 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLE--ERGYLRFSK 96 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEec
Confidence 478899999888777789999999999999999999999997 457777653
No 108
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=63.32 E-value=7.5 Score=33.90 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=40.7
Q ss_pred EEEcHHHHHHHHhhc---C--CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 554 LIVSTYQAATLLLFN---T--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 554 l~~s~~Q~~ILl~fn---~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
+-++.-|+.||+.+- + ....|.++|++.+|++...+.+.|+.|. +.++|.+.+
T Consensus 28 lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le--~kGlI~~~~ 85 (128)
T 2vn2_A 28 LGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLL--QKGMIAIEE 85 (128)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHH--HTTSSEECC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 345777877776543 2 2348999999999999999999999997 457777653
No 109
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=62.85 E-value=8.2 Score=34.27 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=40.3
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
++..+-.||..+.++..+|+.||++.+|++...+.+.|..|.. .+++.+
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 51 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLES--FGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEE
Confidence 3556777888887778899999999999999999999999963 466653
No 110
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=62.48 E-value=5.9 Score=38.92 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=42.4
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+.+.+.+|..||++.+|++...+.+.|..|. +.+++.+.
T Consensus 150 L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le--~~GlV~r~ 199 (244)
T 2wte_A 150 YSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELK--KFGILTQK 199 (244)
T ss_dssp CCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 567888999887666789999999999999999999999996 45677653
No 111
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=61.79 E-value=7.8 Score=35.70 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=42.3
Q ss_pred EEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 554 LIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 554 l~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
..++..+..||..+..+..+|+.||++.+|++...+.+.|..|.. .+++.+
T Consensus 13 ~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~--~G~I~~ 63 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQE--RGVIER 63 (171)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEe
Confidence 446778888998888778899999999999999999999999963 456643
No 112
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=61.50 E-value=7.3 Score=33.26 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=38.3
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++....||.++.+ ++.|+.||++.+|++...+-++|..|. +.+++...
T Consensus 17 ~~~R~~Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~--~~GlV~~~ 64 (118)
T 3f6o_A 17 DPTRRAVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLE--DSGWIRTH 64 (118)
T ss_dssp SHHHHHHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 3455667766664 678999999999999999999999996 46787654
No 113
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=60.99 E-value=13 Score=28.22 Aligned_cols=40 Identities=10% Similarity=0.172 Sum_probs=33.2
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 597 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 597 (722)
++.-|..|+.++ ..+.|..||++.+|++...+...+..+.
T Consensus 12 L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 12 LTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 567788888777 3567999999999999999998887764
No 114
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=60.85 E-value=8.5 Score=31.76 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=40.9
Q ss_pred EcHHHHHHHHhhcCC------CCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 556 VSTYQAATLLLFNTS------DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~------~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
+++.|..+|..+.+. ..+++.+|++.++++...|.++|..|. +.+++..
T Consensus 14 l~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe--~~GLV~r 68 (96)
T 2obp_A 14 IDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQ--AAGLADV 68 (96)
T ss_dssp CCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHH--HCCCEEe
Confidence 678899998866543 679999999999999999999999996 4566654
No 115
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=60.39 E-value=8.6 Score=34.41 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=41.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
++..+..||..+.++..+|+.||++.+|++...+.+.|..|.. .+++..
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 54 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQ--AGIITG 54 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHH--HTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--cCCcce
Confidence 4567778888888778999999999999999999999999963 456653
No 116
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=60.23 E-value=13 Score=30.17 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=35.4
Q ss_pred EEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 004939 554 LIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 597 (722)
Q Consensus 554 l~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 597 (722)
..+|.-+..||.++- .++|..||++.+|++...++.++..+.
T Consensus 28 ~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 28 DVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp -CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 356788888888776 568999999999999999999988775
No 117
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=60.12 E-value=5.4 Score=32.95 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=35.0
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
++....||..+-..++.|+.||++.+|++...+-++|..|. .. ++..
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~--~~-lv~~ 72 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMR--GK-VLKR 72 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHB--TT-TBEE
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HH-hhhh
Confidence 44556666333334579999999999999999999999996 34 5543
No 118
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=59.69 E-value=9.2 Score=34.16 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=41.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
++..+..||.++.++..+|..||++.+|++...+.+.+..|.. .+++.+
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 55 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKK--LGIIRK 55 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHH--HTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 4567778888888888999999999999999999999999963 456653
No 119
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=58.16 E-value=15 Score=29.07 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=33.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 597 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 597 (722)
++.-|..|+.++ ..++|.+||++.+|++...++..+....
T Consensus 22 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 22 LTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 567777788776 3568999999999999999998887664
No 120
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=58.13 E-value=12 Score=27.58 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=30.6
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHh-----CCCHHHHHHHHhHh
Q 004939 560 QAATLLLFNTSDRLSYSEIMTQL-----NLTHDDLVRLLHSL 596 (722)
Q Consensus 560 Q~~ILl~fn~~~~~t~~ei~~~t-----~i~~~~l~~~L~~L 596 (722)
++.|+.+++..+.+|.+||++.+ +++...+.+.|..+
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 44555566667789999999999 99999999999855
No 121
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=57.62 E-value=12 Score=32.96 Aligned_cols=50 Identities=14% Similarity=0.261 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhC----CCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNT-SDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~-~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+|..|..||..+-+ .+++|..||++.++ ++...+.+.|..|. +-+++.+.
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe--~kGlv~r~ 61 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLA--KKNLVLQI 61 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 57889999988877 57899999999998 79999999999997 44777764
No 122
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=57.33 E-value=6 Score=34.02 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=42.9
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhC----CCHHHHHHHHhHhhhcccceeecC
Q 004939 555 IVSTYQAATLLLFNTSDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 555 ~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
.+|..|..||..+-+.+++|..||++.++ ++...+...|..|. +-+++.+.
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe--~kGlv~R~ 61 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLY--KKEIIKRY 61 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHH--HCCceEEE
Confidence 46889999998887778999999999997 57899999999997 45777664
No 123
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=57.32 E-value=11 Score=34.11 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=40.8
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
++..+..||..+.++..+|+.||++.+|++...+.+.|..|.. .+++.+
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLED--AGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEee
Confidence 4567778888888778899999999999999999999999963 456653
No 124
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=56.95 E-value=13 Score=31.93 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=37.1
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 558 TYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 558 ~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
..+..||..+.+ +..++.+|++.+|++...+-++|..|.. .+++...
T Consensus 46 ~~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~--~Glv~~~ 92 (122)
T 1r1t_A 46 PNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRN--LRLVSYR 92 (122)
T ss_dssp HHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEE
Confidence 345667766654 5789999999999999999999999963 5676643
No 125
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=56.83 E-value=10 Score=37.54 Aligned_cols=56 Identities=13% Similarity=0.252 Sum_probs=43.8
Q ss_pred HHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEeccc
Q 004939 561 AATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 624 (722)
Q Consensus 561 ~~ILl~fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~ 624 (722)
..||.+|.+ ...+|+.||++.+|++...+.+.|..|. ..+.|.+.+. +..|.+...
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~--~~G~v~~~~~------~~~Y~lG~~ 65 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQ--EAGFVEQVEG------ARSYRLGPQ 65 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHH--HTTSEEECSS------SSEEEECTT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEcCC------CCcEEcCHH
Confidence 357788886 4689999999999999999999999997 4678877642 356666443
No 126
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=56.17 E-value=14 Score=35.81 Aligned_cols=153 Identities=12% Similarity=0.187 Sum_probs=83.4
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec-CCCCCC-CCCCCeEEecccCC--------
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK-EPNTKT-ISQSDHFEFNSKFT-------- 626 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~-~~~~~~-i~~~~~~~~N~~f~-------- 626 (722)
+.....||.++.+ +++|+.+|++.+|++...+.++|..|. +.+++.. ...+.. -.+.-.|.++....
T Consensus 11 ~~~R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le--~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~~~~~l~~~ 87 (232)
T 2qlz_A 11 NKVRRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIME--REGVLQSYEKEERFIGPTKKYYKISIAKSYVFTLTPE 87 (232)
T ss_dssp SHHHHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHH--HTTSEEEEEECC-----CEEEEEECCCEEEEEEEETT
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeeecCCCCCCccEEEEEccchhhHHHHHHH
Confidence 3445567766664 679999999999999999999999996 4577765 222210 01122355544210
Q ss_pred -----------CCCcceeccCCChh--------------hhhhHHHhHHHhhhhhhhhheeeccccCcc-----CChhhH
Q 004939 627 -----------DRMRRIKIPLPPVD--------------ERKKIVEDVDKDRRYAIDAALVRIMKSRKV-----LGHQQL 676 (722)
Q Consensus 627 -----------~~~~~i~i~~~~~~--------------e~~~~~~~v~~~r~~~i~A~IVRimK~~k~-----l~~~~L 676 (722)
.....+.|+....+ +..+...+..+ -...+++.+-.+|+..|. +.-.+.
T Consensus 88 ~~w~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~v~~~~~~~~~~~~~~~le~ig~~~~ 166 (232)
T 2qlz_A 88 MFWYKGLDLGDAELRDFEISLSGLDTEPSTLKEMITDFIKANKELEKVLE-AFKTIESYRSSLMRKIKEAYLKEIGDMTQ 166 (232)
T ss_dssp EEEEEEEECCSCCCCCEEEECTTSCSCCCSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHHHHhhccccccchhhhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence 00111111111000 00111111222 234566666666655433 221222
Q ss_pred HHHHH----------HHhccCCCCChhHHHHHHHhhhhhhhhcccCC
Q 004939 677 VSECV----------EQLSRMFKPDIKAIKKRMEDLITRDYLERDKE 713 (722)
Q Consensus 677 ~~~v~----------~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~ 713 (722)
-..+. ..+......+++.|...+..|.+.|.++|..+
T Consensus 167 ~~~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~ 213 (232)
T 2qlz_A 167 LAILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFVPVKIIND 213 (232)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETT
T ss_pred HHHHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecC
Confidence 22222 23334566788999999999999999987654
No 127
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=56.01 E-value=9.1 Score=33.64 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=39.4
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
+..+..||..+..++.+|+.||++.+|++...+.+.|..|.. .+++.+
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 50 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEE--KGIIEG 50 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--HTSSCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEec
Confidence 345677887787777899999999999999999999999963 466654
No 128
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=55.28 E-value=9.2 Score=30.14 Aligned_cols=58 Identities=3% Similarity=0.115 Sum_probs=42.5
Q ss_pred heeeccccC--ccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCceee
Q 004939 660 ALVRIMKSR--KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 720 (722)
Q Consensus 660 ~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y~Y 720 (722)
.|...+... +.++.++|...+.+.. ...+...|-+.|+.|.+.|+|.|...+.+...|
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~---~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMG---EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 455555554 5799999999876532 246889999999999999999997653344444
No 129
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=54.82 E-value=12 Score=33.35 Aligned_cols=49 Identities=10% Similarity=0.181 Sum_probs=40.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
++..+..||..+.++...|+.+|++.+|++...+.+.|..|.. .+++..
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE--SGVIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHH--HTSSCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEE
Confidence 4567778888888778899999999999999999999999963 456653
No 130
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=54.57 E-value=14 Score=36.05 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=42.7
Q ss_pred HHHHHhhcCCC-CcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEeccc
Q 004939 561 AATLLLFNTSD-RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 624 (722)
Q Consensus 561 ~~ILl~fn~~~-~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~ 624 (722)
..||.+|.+.. .+|+.||++.+|++...+.+.|..|. +.+++.+.+. +..|.+...
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~~~------~~~Y~lg~~ 65 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALE--EEFLVEALGP------AGGFRLGPA 65 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHH--TTTSEEECGG------GCEEEECSH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeCC------CCeEEECHH
Confidence 35777787654 79999999999999999999999997 4578876532 245666443
No 131
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=53.05 E-value=7.2 Score=33.31 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=42.6
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhC----CCHHHHHHHHhHhhhcccceeecC
Q 004939 555 IVSTYQAATLLLFNTSDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 555 ~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
.++..|..||..+.+.+++|..+|++.++ ++...+.+.|..|. +.+++.+.
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~--~~Glv~r~ 61 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLY--KKGFIDRK 61 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHH--HCCCeEEE
Confidence 36788999998887677899999999999 78999999999997 34677654
No 132
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=52.61 E-value=14 Score=31.30 Aligned_cols=46 Identities=9% Similarity=0.194 Sum_probs=37.8
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 558 TYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 558 ~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
..|..||..+.+ +..|+.+|++.+|++...+-++|..|.. .+++..
T Consensus 32 ~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~--~Glv~~ 77 (119)
T 2lkp_A 32 PSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRN--LGLVVG 77 (119)
T ss_dssp HHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHH--HCSEEE
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 567778877766 6799999999999999999999999963 456654
No 133
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=52.40 E-value=16 Score=29.75 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=33.9
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 004939 555 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 597 (722)
Q Consensus 555 ~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 597 (722)
.++.-|..|+.++ ..++|.+||++.+|++...++..+....
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3577788888776 4578999999999999999998887764
No 134
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=52.33 E-value=7.3 Score=31.88 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=38.5
Q ss_pred eeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCce
Q 004939 661 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 718 (722)
Q Consensus 661 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y 718 (722)
|...+...+.++..+|...+. ..+..+.+.+-+.|..|.++|||+|..+.+..+
T Consensus 13 iL~~l~~~~~~~~~el~~~la----~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~ 66 (99)
T 1tbx_A 13 VLAYLYDNEGIATYDLYKKVN----AEFPMSTATFYDAKKFLIQEGFVKERQERGEKR 66 (99)
T ss_dssp HHHHHTTCTTCBHHHHHHHHH----TTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHcCCcCHHHHHHHHH----HHcCCCHHHHHHHHHHHHHCCCEEEEecCCceE
Confidence 344444556777777765443 356789999999999999999999976543333
No 135
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=52.03 E-value=20 Score=27.65 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=32.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 597 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 597 (722)
+|.-|..|+.++ ..++|.+||++.+|++...+...+....
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677777776 4578999999999999999988877654
No 136
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=51.78 E-value=19 Score=32.53 Aligned_cols=45 Identities=9% Similarity=0.208 Sum_probs=37.9
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceee
Q 004939 559 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 605 (722)
Q Consensus 559 ~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~ 605 (722)
....||..+.++..+|+.+|++.+|++...+.+.+..|.. .+++.
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~--~g~i~ 48 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEE--DGVIR 48 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHH--TTSSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCee
Confidence 3456788888888999999999999999999999999963 45655
No 137
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=50.90 E-value=8 Score=35.10 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=39.1
Q ss_pred EcHHHHHHHHhhcC--CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+.. .+++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~ 95 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLD--DRGLVLRT 95 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEeec
Confidence 46789999887766 4589999999999999999999999997 45777764
No 138
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=50.86 E-value=12 Score=30.29 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCCC-CcCHHHHHHHhCCCHHH-HHHHHhHhhhcccceee
Q 004939 559 YQAATLLLFNTSD-RLSYSEIMTQLNLTHDD-LVRLLHSLSCAKYKILL 605 (722)
Q Consensus 559 ~Q~~ILl~fn~~~-~~t~~ei~~~t~i~~~~-l~~~L~~L~~~k~kiL~ 605 (722)
-+..+|..+...+ ++|..||++.+|++... +.+.|..|. +.+++.
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le--~~Glv~ 62 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLI--RAGLVK 62 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHH--HTTSEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHH--HCCCee
Confidence 3455666666655 79999999999999999 999999996 345554
No 139
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=50.28 E-value=28 Score=27.23 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=33.2
Q ss_pred HHHHHhhcCCCCcCHHHHHHHhCC-CHHHHHHHHhHhhh
Q 004939 561 AATLLLFNTSDRLSYSEIMTQLNL-THDDLVRLLHSLSC 598 (722)
Q Consensus 561 ~~ILl~fn~~~~~t~~ei~~~t~i-~~~~l~~~L~~L~~ 598 (722)
..|--++|+.+.+|+.+|++.+|+ +.+++..++--|..
T Consensus 13 G~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaR 51 (77)
T 2l01_A 13 GQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLR 51 (77)
T ss_dssp HHHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhh
Confidence 345567788889999999999999 99999999999975
No 140
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.05 E-value=16 Score=30.04 Aligned_cols=50 Identities=10% Similarity=0.170 Sum_probs=42.0
Q ss_pred EEcHHHHHHHHhhcC--CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 555 IVSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 555 ~~s~~Q~~ILl~fn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
.++..|..|+-+..+ +++++..||...++++...+.++|..|.. -+++..
T Consensus 34 ~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~--k~lIK~ 85 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIKA 85 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh--CCCEEE
Confidence 467899999988876 56799999999999999999999999964 355554
No 141
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=49.04 E-value=14 Score=36.25 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCC--CcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 556 VSTYQAATLLLFNTSD--RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~--~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
+|..|..||......+ ++|..||++.++++...+.+.+..|. +.+++.+.+
T Consensus 156 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe--~~GlV~R~~ 208 (250)
T 1p4x_A 156 LSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLK--KQGYLIKER 208 (250)
T ss_dssp SCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEeeC
Confidence 5778999998876654 59999999999999999999999996 457877653
No 142
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=48.52 E-value=6.3 Score=31.01 Aligned_cols=52 Identities=12% Similarity=0.280 Sum_probs=40.0
Q ss_pred hheeeccccCc---cCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCce
Q 004939 659 AALVRIMKSRK---VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 718 (722)
Q Consensus 659 A~IVRimK~~k---~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y 718 (722)
-.|..+|+... .++..+|-..+ ..+...|.+.|..|.+.|+|+|.+..+..|
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~L--------gvs~~tV~~~L~~L~~~G~I~~~g~~~~~W 71 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKL--------GTPKKEINRVLYSLAKKGKLQKEAGTPPLW 71 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHH--------CCCHHHHHHHHHHHHHHTSEEEECSSSCEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEecCCCCCce
Confidence 34666788877 78887776643 367789999999999999999987665443
No 143
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=48.47 E-value=5.6 Score=31.38 Aligned_cols=55 Identities=11% Similarity=0.043 Sum_probs=35.9
Q ss_pred hhhhhhhheeeccccC--ccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCC
Q 004939 653 RRYAIDAALVRIMKSR--KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENP 715 (722)
Q Consensus 653 r~~~i~A~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~ 715 (722)
|...|-..|-+-++.+ ...+..||... |..+..-|.+-|..|.++|||+|+...+
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~--------lgvS~~TVrr~L~~Le~kG~I~R~~ggr 61 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADA--------AGLSIYQVRLYLEQLHDVGVLEKVNAGK 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEESCSS
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCcEEecCCCC
Confidence 3333434444433343 56666666654 3446777999999999999999987543
No 144
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=48.22 E-value=15 Score=30.69 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=33.4
Q ss_pred HHHh-hcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 563 TLLL-FNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 563 ILl~-fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
|+.. +..++.+|..+|++.+|++...+.++|..|.. .+++...
T Consensus 23 Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~--~GlV~~~ 66 (110)
T 1q1h_A 23 VLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEE--QGFVSYR 66 (110)
T ss_dssp HHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHH--HTSCEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 4433 34555799999999999999999999999974 4666543
No 145
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=48.02 E-value=20 Score=31.77 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=36.6
Q ss_pred EcHHHHHHHHhhcCC-----CCcCHHHHHHHhCCCHHHHHHHHhHhhhccccee
Q 004939 556 VSTYQAATLLLFNTS-----DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKIL 604 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~-----~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL 604 (722)
+|..|..||...... +++|..+|++.++++...+.+.+..|.. .+++
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~--~glV 82 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRR--DGLV 82 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHH--TTSB
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH--CCCE
Confidence 567899999877654 3599999999999999999999999963 4565
No 146
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=47.83 E-value=12 Score=40.45 Aligned_cols=51 Identities=22% Similarity=0.164 Sum_probs=44.7
Q ss_pred EEcHHHHHHHHhhcCC--CCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 555 IVSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 555 ~~s~~Q~~ILl~fn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
.+|..|..||..+.++ +++|..||++.++++...+.+.|..|. +.+++.+.
T Consensus 401 ~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le--~~g~v~r~ 453 (487)
T 1hsj_A 401 NLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLK--DLKLLSKK 453 (487)
T ss_dssp CCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHH--TTTTSCCE
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeec
Confidence 3678999999998877 889999999999999999999999996 45777764
No 147
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=47.41 E-value=12 Score=29.47 Aligned_cols=43 Identities=5% Similarity=0.029 Sum_probs=32.3
Q ss_pred eeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhccc
Q 004939 661 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 711 (722)
Q Consensus 661 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~ 711 (722)
|.+.+...+.++..+|... +..+...+.+.|..|.+.|+|++.
T Consensus 5 Il~~L~~~~~~s~~eLa~~--------lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAEA--------LAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHSCCCCHHHHHHH--------HTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4445555566777666654 456888899999999999999954
No 148
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=47.23 E-value=24 Score=34.44 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=37.0
Q ss_pred HHHHHhhcCCC-CcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 561 AATLLLFNTSD-RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 561 ~~ILl~fn~~~-~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
..||.+|.+.. .+|+.||++.+|++...+.+.|..|. +.+++.+.
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~ 56 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLE--EKGFVLRK 56 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEC
Confidence 45777786554 79999999999999999999999997 35777654
No 149
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=46.83 E-value=10 Score=32.95 Aligned_cols=27 Identities=4% Similarity=0.129 Sum_probs=23.8
Q ss_pred cCCCCChhHHHHHHHhhhhhhhhcccC
Q 004939 686 RMFKPDIKAIKKRMEDLITRDYLERDK 712 (722)
Q Consensus 686 ~~F~~~~~~ik~~Ie~Liereyl~r~~ 712 (722)
.+...+...|.++|..|+++|||+|..
T Consensus 59 ~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 59 ERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp HTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred HHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 356789999999999999999999954
No 150
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=46.75 E-value=14 Score=36.80 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=36.0
Q ss_pred HHHHhhcCC-CCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 562 ATLLLFNTS-DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 562 ~ILl~fn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
.||.+|.+. .++|+.||++.+|++...+.+.|..|.. .+.|.+.+
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~--~G~v~~~~ 79 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTE--LDLLARSA 79 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHH--TTSEEECT
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEECC
Confidence 478888765 4799999999999999999999999974 57887753
No 151
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=46.57 E-value=9.1 Score=33.01 Aligned_cols=58 Identities=14% Similarity=0.320 Sum_probs=41.7
Q ss_pred hhhhheeeccccCcc--CChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccC--CCCC--ceeec
Q 004939 656 AIDAALVRIMKSRKV--LGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK--ENPN--MFRYL 721 (722)
Q Consensus 656 ~i~A~IVRimK~~k~--l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~--~d~~--~y~Yi 721 (722)
..+..|.+++..... ++..+|-..+ ..+.+.+-+.|+.|.++|||.|.. .|+. .|.|.
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l--------~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~ 89 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSL--------KLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYK 89 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEe
Confidence 345666777766655 8888887654 358889999999999999999853 3333 35554
No 152
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=46.04 E-value=17 Score=30.75 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=41.7
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHh--CCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQL--NLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t--~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+....-.||.++.+...+|..+|++.+ |++...+.++|..|. +.+++...
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le--~~GLV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLA--DHDLLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHH--HTTSEEEC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEec
Confidence 455677788888776799999999999 999999999999996 46777654
No 153
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=45.73 E-value=34 Score=25.56 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=29.5
Q ss_pred EcHHHHHHHHhhc---CCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 004939 556 VSTYQAATLLLFN---TSDRLSYSEIMTQLNLTHDDLVRLLHSL 596 (722)
Q Consensus 556 ~s~~Q~~ILl~fn---~~~~~t~~ei~~~t~i~~~~l~~~L~~L 596 (722)
++.-|-.|+.+.- +..++|++||++.+|++...++..+..-
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra 49 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455555554432 3467999999999999999888776554
No 154
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=45.66 E-value=12 Score=31.91 Aligned_cols=59 Identities=19% Similarity=0.326 Sum_probs=42.5
Q ss_pred hhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCceeec
Q 004939 658 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 721 (722)
Q Consensus 658 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y~Yi 721 (722)
+..|.+++-..+.++..+|...+.. ...++.+.+...|+.|.++|||+|..++ ..+.|.
T Consensus 12 q~~vL~~L~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~R~~~~-r~~~~~ 70 (126)
T 1sd4_A 12 EWDVMNIIWDKKSVSANEIVVEIQK----YKEVSDKTIRTLITRLYKKEIIKRYKSE-NIYFYS 70 (126)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHT----TSCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhh----cCCCChhhHHHHHHHHHHCCceEEEeCC-CeEEEE
Confidence 3444555555667888888776632 1345788999999999999999998754 467764
No 155
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=45.21 E-value=15 Score=33.06 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=39.1
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+.....||.++. .+++|+.||++.+|++...+-++|..|. +.+++...
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~--~aGlV~~~ 104 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLT--EAGLVTPR 104 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 456677777776 4679999999999999999999999996 45777654
No 156
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=44.98 E-value=4.1 Score=33.89 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=41.4
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhC----CCHHHHHHHHhHhhhcccceeecCC
Q 004939 555 IVSTYQAATLLLFNTSDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 555 ~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
.++..|..||..+-+.+++|..||++.++ ++...+.+.|..|. +-+++.+.+
T Consensus 32 ~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe--~KGlV~R~~ 87 (99)
T 2k4b_A 32 NVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLV--KKEMLSTEK 87 (99)
T ss_dssp CCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHH--HTTSCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHH--HCCCEEEEe
Confidence 35677888888776677899999999997 46789999999997 447777653
No 157
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=44.65 E-value=21 Score=35.11 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=37.2
Q ss_pred HHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 562 ATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 562 ~ILl~fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
.||.+|.. ...+|+.||++.+|++...+.+.|..|.. .+++.+.+
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~--~G~v~~~~ 72 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA--RSVLTSRA 72 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH--TTSEEECT
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEECC
Confidence 57777864 46899999999999999999999999973 57777653
No 158
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=44.55 E-value=11 Score=30.07 Aligned_cols=53 Identities=11% Similarity=0.292 Sum_probs=40.3
Q ss_pred hhheeeccccCc---cCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCce
Q 004939 658 DAALVRIMKSRK---VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 718 (722)
Q Consensus 658 ~A~IVRimK~~k---~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y 718 (722)
+-.|..+|+... .++..+|-..+ ..+...|.++|..|.+.|+|++.+..+..|
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~L--------gvsr~tV~~~L~~Le~~G~I~~~g~~~~~W 67 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKL--------GTPKKEINRVLYSLAKKGKLQKEAGTPPLW 67 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEESSSSCEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEecCCCCCee
Confidence 334666777777 78888877653 467889999999999999999977655443
No 159
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=44.28 E-value=7.9 Score=33.06 Aligned_cols=56 Identities=21% Similarity=0.415 Sum_probs=40.7
Q ss_pred eeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCceeec
Q 004939 661 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 721 (722)
Q Consensus 661 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y~Yi 721 (722)
|..++...+.++..+|...+-.. ...+.+.+...|+.|.++|||+|..+| ..+.|+
T Consensus 15 vL~~l~~~~~~t~~ela~~l~~~----~~~s~~tv~~~l~~L~~~Glv~r~~~~-rr~~~~ 70 (123)
T 1okr_A 15 VMNIIWMKKYASANNIIEEIQMQ----KDWSPKTIRTLITRLYKKGFIDRKKDN-KIFQYY 70 (123)
T ss_dssp HHHHHHHHSSEEHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHTSEEEEEET-TEEEEE
T ss_pred HHHHHHhCCCcCHHHHHHHHhcc----CCCcHhhHHHHHHHHHHCCCeEEEecC-CeEEEE
Confidence 33344446778888888876432 235788899999999999999998764 455554
No 160
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=43.92 E-value=22 Score=30.17 Aligned_cols=58 Identities=9% Similarity=0.053 Sum_probs=49.6
Q ss_pred hhhhhhhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhccc
Q 004939 653 RRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 711 (722)
Q Consensus 653 r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~ 711 (722)
++-.++.+|..++. ++.+.--+|...+.+...+.+.++...+-..+..|.++|+|++.
T Consensus 9 ~~g~l~~~IL~~L~-~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 9 LRAQTNVILLNVLK-QGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHHH-HCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhchHHHHHHHHHH-hCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 45567888888886 47788889999998777667889999999999999999999986
No 161
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=43.36 E-value=31 Score=28.63 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=36.3
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHh-CCCHHHHHHHHhHhhhcccceeecC
Q 004939 559 YQAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 559 ~Q~~ILl~fn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+...||.... .++.++.||++.+ |++...+.+.|..|. +.+++.+.
T Consensus 15 ~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le--~~GlI~r~ 61 (107)
T 2hzt_A 15 WKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELE--ADGVINRI 61 (107)
T ss_dssp THHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred cHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 3445665554 4679999999999 999999999999996 45787754
No 162
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=42.79 E-value=23 Score=25.73 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=27.0
Q ss_pred HHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 004939 561 AATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 597 (722)
Q Consensus 561 ~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 597 (722)
..|+.++- .++|.+||++.+|++...+..++....
T Consensus 4 ~~vl~l~~--~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 4 RQVLKLID--EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHHHHHHH--TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34444443 367999999999999999998887764
No 163
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=42.62 E-value=63 Score=22.68 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.4
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHh
Q 004939 571 DRLSYSEIMTQLNLTHDDLVRLLH 594 (722)
Q Consensus 571 ~~~t~~ei~~~t~i~~~~l~~~L~ 594 (722)
.++|..+|++.+|++...+.+.+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 357999999999999999887663
No 164
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=42.52 E-value=34 Score=32.01 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=39.8
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
.+..+..||.++.+ +.+|..||++.+|++...+.+.|..|. +.+++...
T Consensus 18 ~d~~~~~IL~~L~~-~~~s~~eLA~~lglS~stv~~~l~~Le--~~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLRN-KEMTISQLSEILGKTPQTIYHHIEKLK--EAGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 35567778877764 689999999999999999999999996 45677654
No 165
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=42.48 E-value=34 Score=27.15 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=28.3
Q ss_pred cHHHHHHHHh-h--cCCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 004939 557 STYQAATLLL-F--NTSDRLSYSEIMTQLNLTHDDLVRLLHSL 596 (722)
Q Consensus 557 s~~Q~~ILl~-f--n~~~~~t~~ei~~~t~i~~~~l~~~L~~L 596 (722)
+.-|-.|+.+ | .+..++|++||++.+|++...++..+..-
T Consensus 20 ~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra 62 (87)
T 1tty_A 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKA 62 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4445555543 3 33467999999999999999888766543
No 166
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=41.97 E-value=15 Score=28.61 Aligned_cols=37 Identities=8% Similarity=0.243 Sum_probs=31.1
Q ss_pred HHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 004939 561 AATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLS 597 (722)
Q Consensus 561 ~~ILl~fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 597 (722)
=.||-.+.+ ..+++..+|++.+|++.++|.++|..|-
T Consensus 22 ekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 346666655 4689999999999999999999999995
No 167
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=41.43 E-value=18 Score=31.61 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=33.0
Q ss_pred HhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 565 LLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 565 l~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
.+....+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 15 ~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le--~~Glv~r~ 55 (142)
T 1on2_A 15 MLIEEKGYARVSDIAEALAVHPSSVTKMVQKLD--KDEYLIYE 55 (142)
T ss_dssp HHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 334445679999999999999999999999996 35677654
No 168
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=41.35 E-value=17 Score=29.18 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=31.6
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 597 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 597 (722)
+|.-|..|+.++ ..++|.+||++.+|++...++.++....
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455666677666 3568999999999999999998887664
No 169
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=41.04 E-value=14 Score=29.92 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=35.4
Q ss_pred EcHHHHHHHHhhcC-CCC---cCHHHHHHHhCCCHHHHHHHHhHhhhccccee
Q 004939 556 VSTYQAATLLLFNT-SDR---LSYSEIMTQLNLTHDDLVRLLHSLSCAKYKIL 604 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~-~~~---~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL 604 (722)
++.-+..||+.+.. .++ +|..+|++.+|++...+.+.|..|. +.+++
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~Glv 60 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFE--EAKMV 60 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHH--HTTSE
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCcCc
Confidence 35566767765532 233 9999999999999999999999996 34555
No 170
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=40.93 E-value=32 Score=23.16 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=25.7
Q ss_pred HHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 004939 561 AATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 596 (722)
Q Consensus 561 ~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 596 (722)
..|+.++.+ .+|..+|++.+|++...+.+.+...
T Consensus 12 ~~i~~~~~~--g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 12 AQLDVMKLL--NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 345555543 5799999999999999988877543
No 171
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=40.87 E-value=33 Score=33.64 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=42.4
Q ss_pred HHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEeccc
Q 004939 560 QAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 624 (722)
Q Consensus 560 Q~~ILl~fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~ 624 (722)
...||.+|.. ...+|+.||++.+|++...+.+.|..|.. .+++.+. +..|.+...
T Consensus 16 ~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~--~G~v~~~--------~~~Y~Lg~~ 71 (257)
T 2g7u_A 16 GFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK--LGYVAGS--------GGRWSLTPR 71 (257)
T ss_dssp HHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE--------TTEEEECGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEeC--------CCEEEEcHH
Confidence 3457778875 45899999999999999999999999973 5677653 246766544
No 172
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=40.86 E-value=29 Score=34.30 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=42.1
Q ss_pred HHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEeccc
Q 004939 561 AATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 624 (722)
Q Consensus 561 ~~ILl~fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~~~N~~ 624 (722)
..||.+|.+ ...+|+.||++.+|++...+.+.|..|.. .+++.+. +..|.+...
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~--~G~v~~~--------~~~Y~Lg~~ 78 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE--LGYVATD--------GSAFWLTPR 78 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEES--------SSEEEECGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEec--------CCEEEEcHH
Confidence 357778874 46899999999999999999999999973 5677653 246776544
No 173
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=40.84 E-value=34 Score=28.19 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=26.7
Q ss_pred cHHHHHHH-Hhhc--CCCCcCHHHHHHHhCCCHHHHHHHHh
Q 004939 557 STYQAATL-LLFN--TSDRLSYSEIMTQLNLTHDDLVRLLH 594 (722)
Q Consensus 557 s~~Q~~IL-l~fn--~~~~~t~~ei~~~t~i~~~~l~~~L~ 594 (722)
+.-|-.|+ +.|- +.+++|++||++.+|++...++..+.
T Consensus 21 p~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 21 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 44444444 4442 34689999999999999988876544
No 174
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=40.73 E-value=30 Score=29.99 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=37.1
Q ss_pred EEcHHHHHHHHhh----cCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeec
Q 004939 555 IVSTYQAATLLLF----NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 606 (722)
Q Consensus 555 ~~s~~Q~~ILl~f----n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~ 606 (722)
.++..|..+|..+ ...+.+|..+|++.+|++...+.+.|..|.. .+++.+
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~--~Gli~r 63 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEE--KGLVKK 63 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHH--CCCEEe
Confidence 3455555555433 3456899999999999999999999999963 466654
No 175
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=39.64 E-value=8.8 Score=35.38 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=40.9
Q ss_pred EcHHHHHHHHhhcCCC---CcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSD---RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~---~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
++..|..||..+...+ .+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 119 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLL--EKGLIERR 119 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHH--HHTSEECC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCEEec
Confidence 4678998888776544 39999999999999999999999996 45677654
No 176
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=39.24 E-value=27 Score=32.72 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 004939 559 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 597 (722)
Q Consensus 559 ~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 597 (722)
-|-.|+.+.+++..+|++||++.+|+++..+++-|.-|.
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~ 51 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLN 51 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999885
No 177
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=39.13 E-value=24 Score=29.58 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHh-CCCHHHHHHHHhHhhhcccceeecC
Q 004939 558 TYQAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 558 ~~Q~~ILl~fn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
.+...||....+ +++++.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 22 ~~~~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le--~~GlI~r~ 69 (112)
T 1z7u_A 22 KWKLSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREME--KDGLVHRE 69 (112)
T ss_dssp TTHHHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred ccHHHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 345566655543 679999999999 999999999999996 45777654
No 178
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=38.86 E-value=23 Score=30.99 Aligned_cols=59 Identities=10% Similarity=0.132 Sum_probs=41.0
Q ss_pred hhheeecccc-CccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCceeec
Q 004939 658 DAALVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 721 (722)
Q Consensus 658 ~A~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y~Yi 721 (722)
+..|.+++-. ...++..+|...+.. .-..+...+...|+.|.++|||.|..++ ..+.|.
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~r~~~~-r~~~~~ 70 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSA----RRDLAYTTVMAVLQRLAKKNLVLQIRDD-RAHRYA 70 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTT----TCCCCHHHHHHHHHHHHHTTSEEEEC----CCEEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhc----cCCCCHHHHHHHHHHHHHCCCEEEEecC-CeEEEE
Confidence 4455556655 467888888876532 1235788999999999999999998754 466663
No 179
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=38.75 E-value=43 Score=25.40 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=27.8
Q ss_pred cHHHHHHHH-hh--cCCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 004939 557 STYQAATLL-LF--NTSDRLSYSEIMTQLNLTHDDLVRLLHSL 596 (722)
Q Consensus 557 s~~Q~~ILl-~f--n~~~~~t~~ei~~~t~i~~~~l~~~L~~L 596 (722)
+.-|-.|+. .| .+..+.|++||++.+|++...++..+..-
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 444555553 33 23357999999999999999888765543
No 180
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=38.05 E-value=39 Score=29.42 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=36.9
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHh-CCCHHHHHHHHhHhhhcccceeecC
Q 004939 559 YQAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 559 ~Q~~ILl~fn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
..+.||.... .+..++.||++.+ |++...|.+.|..|. +.+++.+.
T Consensus 27 W~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le--~~GLV~R~ 73 (131)
T 4a5n_A 27 WKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELE--ADGIVHRE 73 (131)
T ss_dssp SHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHH--HCCCEEEE
Confidence 4455665555 5689999999999 999999999999996 45788764
No 181
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=37.94 E-value=40 Score=23.93 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=35.7
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHhhcchhhHhHHHHHHhHH
Q 004939 420 KLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLT 463 (722)
Q Consensus 420 ~La~RLL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~~ 463 (722)
-+.+|++.......+.-..|+..|+..-|.......-+|++-+-
T Consensus 5 sViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~ 48 (56)
T 1oks_A 5 SVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKII 48 (56)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 46788887766677888889999999889888888888887653
No 182
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=37.57 E-value=25 Score=34.12 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 560 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 560 Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
-+.|+.+.. +++.|.++|++.+|+++..+..+|..|. +.+++.+.
T Consensus 167 ~~~l~~~l~-~~~~t~~~la~~~~l~~~~V~~~l~~L~--~~~~v~~~ 211 (232)
T 2qlz_A 167 LAILHYLLL-NGRATVEELSDRLNLKEREVREKISEMA--RFVPVKII 211 (232)
T ss_dssp HHHHHHHHH-SSEEEHHHHHHHHTCCHHHHHHHHHHHT--TTSCEEEE
T ss_pred HHHHHHHHh-cCCCCHHHHHHHhCcCHHHHHHHHHHHH--hcCCeEEe
Confidence 344444444 4688999999999999999999999996 56777544
No 183
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=37.40 E-value=35 Score=28.58 Aligned_cols=47 Identities=11% Similarity=0.281 Sum_probs=36.2
Q ss_pred HHHHHHHHhhcCCCCcC--HHHHHHHh-CCCHHHHHHHHhHhhhcccceeecC
Q 004939 558 TYQAATLLLFNTSDRLS--YSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 558 ~~Q~~ILl~fn~~~~~t--~~ei~~~t-~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
.....||....+ ++.+ +.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 27 ~wrl~IL~~L~~-g~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 76 (111)
T 3df8_A 27 KYTMLIISVLGN-GSTRQNFNDIRSSIPGISSTILSRRIKDLI--DSGLVERR 76 (111)
T ss_dssp TTHHHHHHHHTS-SSSCBCHHHHHHTSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ccHHHHHHHHhc-CCCCCCHHHHHHHccCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 345566666553 4555 99999999 999999999999996 46787764
No 184
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=36.28 E-value=37 Score=27.90 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=32.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 597 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 597 (722)
+|.-|..||.++- .++|.+||++.+|++...++..+..+.
T Consensus 35 Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 35 LSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp CCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5667777776664 468999999999999999998887764
No 185
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=36.25 E-value=18 Score=29.19 Aligned_cols=54 Identities=4% Similarity=0.107 Sum_probs=39.8
Q ss_pred hhhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCce
Q 004939 657 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 718 (722)
Q Consensus 657 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y 718 (722)
.+..|.+.+...+.++..+|... +..+.+.+-+.|..|.+.|+|++..+.+..+
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~--------l~is~~tvs~~l~~L~~~glv~~~~~~r~~~ 78 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRI--------TGLSASATSQHLARMRDEGLIDSQRDAQRIL 78 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHH--------HCCCHHHHHHHHHHHHHTTSEEEEECSSCEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEEecCCEEE
Confidence 34456666666667888777664 3468888999999999999999987554433
No 186
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=35.31 E-value=41 Score=29.19 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=37.3
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHh-CCCHHHHHHHHhHhhhcccceeecC
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+.+...||..+. .+..++.||++.+ |++...+-++|..|. +.+++.+.
T Consensus 34 ~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le--~~GlV~r~ 82 (131)
T 1yyv_A 34 SRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALE--QDGFLNRV 82 (131)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHH--HHTCEEEE
T ss_pred CCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCcEEEE
Confidence 344555665555 4679999999999 799999999999996 45787754
No 187
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=33.71 E-value=21 Score=30.69 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=28.6
Q ss_pred ccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhccc--CCCCC
Q 004939 669 KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD--KENPN 716 (722)
Q Consensus 669 k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~--~~d~~ 716 (722)
..++..+|.. .+..+.+.+-+.|..|.++|||+|. +.|+.
T Consensus 52 ~~~t~~eLa~--------~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R 93 (127)
T 2frh_A 52 KEYYLKDIIN--------HLNYKQPQVVKAVKILSQEDYFDKKRNEHDER 93 (127)
T ss_dssp SEEEHHHHHH--------HSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSC
T ss_pred CCcCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 4555555444 3456788899999999999999993 44443
No 188
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=33.47 E-value=13 Score=32.89 Aligned_cols=51 Identities=12% Similarity=0.299 Sum_probs=34.0
Q ss_pred hhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcc----cCCCCCc
Q 004939 658 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLER----DKENPNM 717 (722)
Q Consensus 658 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r----~~~d~~~ 717 (722)
+..|...+ ..+.++..+|-..+ ..+.+.+-+.|..|.++|||+| ++.|+..
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l--------~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~ 94 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQ--------GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRL 94 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHH--------CSCSSHHHHHHHHHHHTTSEEC-----------
T ss_pred HHHHHHHH-HcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCe
Confidence 44455566 67788888877653 3567779999999999999998 6666543
No 189
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=33.32 E-value=33 Score=33.70 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=29.8
Q ss_pred HHHHHHHhh-cCCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 004939 559 YQAATLLLF-NTSDRLSYSEIMTQLNLTHDDLVRLLHSL 596 (722)
Q Consensus 559 ~Q~~ILl~f-n~~~~~t~~ei~~~t~i~~~~l~~~L~~L 596 (722)
+...|+-.+ +....+|+++|++.|||..+++..+|+.|
T Consensus 194 W~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l 232 (276)
T 3to7_A 194 WSDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTL 232 (276)
T ss_dssp HHHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 334444333 34568999999999999999999999988
No 190
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=32.51 E-value=58 Score=25.97 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=27.5
Q ss_pred cHHHHHHHHh-hcCCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 004939 557 STYQAATLLL-FNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 596 (722)
Q Consensus 557 s~~Q~~ILl~-fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 596 (722)
+.-|-.|+.+ +- .++|+.||++.+|++...++..+...
T Consensus 39 ~~~~r~vl~l~~~--~g~s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 39 SAEHRAVIQRSYY--RGWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp CHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4455555544 43 46899999999999999888766543
No 191
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=32.21 E-value=48 Score=27.35 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=34.8
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHh-CCCHHHHHHHHhHhhhcccceeecC
Q 004939 560 QAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 560 Q~~ILl~fn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
-..||.... .++.++.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 27 ~~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 72 (107)
T 2fsw_A 27 TLLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLC--GKGLIKKK 72 (107)
T ss_dssp HHHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 344555444 4679999999999 599999999999996 45777654
No 192
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=31.89 E-value=64 Score=23.77 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=28.1
Q ss_pred EcHHHHHHHHh-hcCCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 004939 556 VSTYQAATLLL-FNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 596 (722)
Q Consensus 556 ~s~~Q~~ILl~-fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 596 (722)
++.-+-.|+.+ +- .++|.+||++.+|++...+...+...
T Consensus 16 L~~~~r~il~l~~~--~g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 16 LTTDQREALLLTQL--LGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555555544 43 35899999999999999888766554
No 193
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=31.82 E-value=56 Score=28.86 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=35.9
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 559 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 559 ~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+-..||.... .+..++.||++.+|++...+.+.|..|. +.+++.+.
T Consensus 25 w~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le--~~GlI~r~ 70 (146)
T 2f2e_A 25 WSMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLV--EHGVMVAV 70 (146)
T ss_dssp SHHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred hHHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 3444554443 3579999999999999999999999996 46788765
No 194
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=31.09 E-value=92 Score=25.22 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 560 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 560 Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
-+.||..... + ++..+|+..+|+++..+.+.+..|. +.+++.+.
T Consensus 10 i~~IL~~i~~-~-~~~t~La~~~~ls~~~~~~~l~~L~--~~GLI~~~ 53 (95)
T 1r7j_A 10 IQAILEACKS-G-SPKTRIMYGANLSYALTGRYIKMLM--DLEIIRQE 53 (95)
T ss_dssp HHHHHHHHTT-C-BCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHHc-C-CCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 3456666664 3 8999999999999999999999996 35677654
No 195
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=30.91 E-value=26 Score=31.69 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=40.4
Q ss_pred hhhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhccc
Q 004939 657 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 711 (722)
Q Consensus 657 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~ 711 (722)
+|..|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|-
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~l--------g~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKV--------GLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeeec
Confidence 466788999999999998887754 57899999999999999999974
No 196
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=30.48 E-value=36 Score=32.12 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=39.2
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 557 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 557 s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+..+..||.++. .++.|+.+|++.+|++...+-++|..|. +.+++...
T Consensus 14 ~~~rl~IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le--~~GLV~~~ 61 (202)
T 2p4w_A 14 NETRRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILE--EAGLIESR 61 (202)
T ss_dssp SHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEE
Confidence 456777777765 4679999999999999999999999997 45777754
No 197
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=30.22 E-value=35 Score=27.67 Aligned_cols=24 Identities=13% Similarity=0.247 Sum_probs=20.9
Q ss_pred CCCCChhHHHHHHHhhhhhhhhcc
Q 004939 687 MFKPDIKAIKKRMEDLITRDYLER 710 (722)
Q Consensus 687 ~F~~~~~~ik~~Ie~Liereyl~r 710 (722)
+...+...+.++|..|.++|||+|
T Consensus 45 ~~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 45 KSNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEE
Confidence 355688889999999999999994
No 198
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=29.55 E-value=29 Score=30.55 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=33.1
Q ss_pred hhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcc
Q 004939 658 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLER 710 (722)
Q Consensus 658 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r 710 (722)
+..|...+...+.++..+|...+ ..+.+.+-+.|..|.++|||+|
T Consensus 43 ~~~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 43 QLAMINVIYSTPGISVADLTKRL--------IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEe
Confidence 34445555555667777766643 3578889999999999999999
No 199
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=29.42 E-value=1.4e+02 Score=23.04 Aligned_cols=58 Identities=5% Similarity=0.185 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhheecccCh-hHHHHHHHHHHHHHhcCCCC
Q 004939 369 SELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDK-DLFAEFYRKKLARRLLFDRS 430 (722)
Q Consensus 369 ~e~La~y~d~~lk~~~~~~~~~~e~~~~l~~i~~lf~~l~~K-d~F~~~Y~~~La~RLL~~~~ 430 (722)
-++++++++..+.++ .+++++...++.+-..+..+... +.|...|-..+.+-|+.+.+
T Consensus 7 C~~iv~~ve~~l~~~----~t~~~I~~~l~~~C~~lp~~~~~C~~~V~~y~~~iI~~l~~~~~ 65 (78)
T 1nkl_A 7 CRKIIQKLEDMVGPQ----PNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKK 65 (78)
T ss_dssp HHHHHHHHHHHHCSS----CCHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcC----CcHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 367888999988853 37899999999998888775554 78999999999998887654
No 200
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=28.76 E-value=21 Score=29.16 Aligned_cols=47 Identities=15% Similarity=0.362 Sum_probs=36.0
Q ss_pred hhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccC
Q 004939 658 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 712 (722)
Q Consensus 658 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~ 712 (722)
+..|...+...+.++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 22 ~~~il~~l~~~~~~s~~ela~~l--------~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 22 DVRIYSLLLERGGMRVSEIAREL--------DLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 44555556556778877776643 468899999999999999999965
No 201
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=28.09 E-value=41 Score=33.16 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=22.4
Q ss_pred CCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 004939 569 TSDRLSYSEIMTQLNLTHDDLVRLLHSL 596 (722)
Q Consensus 569 ~~~~~t~~ei~~~t~i~~~~l~~~L~~L 596 (722)
..+.+|+++|++.|||..+++..+|+.|
T Consensus 211 ~~~~isi~~is~~T~i~~~DIi~tL~~l 238 (284)
T 2ozu_A 211 NDKQISIKKLSKLTGICPQDITSTLHHL 238 (284)
T ss_dssp -----CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred CCCcEeHHHHHHHhCCCHHHHHHHHHHC
Confidence 3458999999999999999999999988
No 202
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=27.90 E-value=36 Score=30.23 Aligned_cols=57 Identities=5% Similarity=0.051 Sum_probs=47.1
Q ss_pred hhhhhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccC
Q 004939 655 YAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 712 (722)
Q Consensus 655 ~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~ 712 (722)
..++.+|..++. .+.+.-.+|.+++.+.....+.++...+-..|..|.++|||+|..
T Consensus 40 g~~~~~IL~~L~-~~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~ 96 (145)
T 1xma_A 40 GYVDTIILSLLI-EGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYY 96 (145)
T ss_dssp GTHHHHHHHHHH-HCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcHHHHHHHHHH-hCCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEE
Confidence 456777777775 367888899999887766667899999999999999999999863
No 203
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=26.45 E-value=42 Score=29.49 Aligned_cols=48 Identities=6% Similarity=0.064 Sum_probs=36.5
Q ss_pred hhhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccC
Q 004939 657 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 712 (722)
Q Consensus 657 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~ 712 (722)
-+..|...+...+.++..+|-.. ...+...+-+.|..|.++|||+|..
T Consensus 44 ~~~~iL~~l~~~~~~t~~ela~~--------l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 44 PEWRVLACLVDNDAMMITRLAKL--------SLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp HHHHHHHHHSSCSCBCHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHCCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEecc
Confidence 34556666666677777776653 4568889999999999999999864
No 204
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=26.26 E-value=40 Score=29.64 Aligned_cols=47 Identities=6% Similarity=0.038 Sum_probs=33.3
Q ss_pred hhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccC
Q 004939 658 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 712 (722)
Q Consensus 658 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~ 712 (722)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 46 ~~~iL~~l~~~~~~t~~ela~~--------l~is~~tvs~~l~~Le~~Gli~r~~ 92 (154)
T 2eth_A 46 ELYAFLYVALFGPKKMKEIAEF--------LSTTKSNVTNVVDSLEKRGLVVREM 92 (154)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHH--------TTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 3444444444556666666553 4568889999999999999999853
No 205
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=25.92 E-value=56 Score=32.28 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=24.4
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHhHhh
Q 004939 572 RLSYSEIMTQLNLTHDDLVRLLHSLS 597 (722)
Q Consensus 572 ~~t~~ei~~~t~i~~~~l~~~L~~L~ 597 (722)
.+|++||++.|||..+++..+|+.|-
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~l~ 237 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQYLN 237 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 79999999999999999999999883
No 206
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=25.90 E-value=66 Score=32.65 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhh
Q 004939 558 TYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 598 (722)
Q Consensus 558 ~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 598 (722)
..+..||.++++...+|.++|++.+|++...+.+.|..|..
T Consensus 5 ~r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~ 45 (321)
T 1bia_A 5 TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRD 45 (321)
T ss_dssp HHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34566787788888899999999999999999999998863
No 207
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=25.08 E-value=1.4e+02 Score=22.94 Aligned_cols=57 Identities=9% Similarity=0.149 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhheec-ccCh-hHHHHHHHHHHHHHhcCCCC
Q 004939 369 SELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAY-ISDK-DLFAEFYRKKLARRLLFDRS 430 (722)
Q Consensus 369 ~e~La~y~d~~lk~~~~~~~~~~e~~~~l~~i~~lf~~-l~~K-d~F~~~Y~~~La~RLL~~~~ 430 (722)
-+++.+.++.++ ++ .+++++...|+.+-..+.. +.+. +.|...|-..+..-|+...+
T Consensus 7 C~~~v~~le~~l-~n----~Te~~I~~~L~~vC~~l~~~~~~~C~~~V~~y~~~Ii~~L~~~~~ 65 (74)
T 1l9l_A 7 CLTIVQKLKKMV-DK----PTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGET 65 (74)
T ss_dssp HHHHHHHHHHHC-SS----CCHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHh-cc----cCHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 356777788888 53 2689999999999888876 6655 78999999999999988654
No 208
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=25.05 E-value=33 Score=29.75 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=31.2
Q ss_pred eeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccC
Q 004939 661 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 712 (722)
Q Consensus 661 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~ 712 (722)
|...+.... ++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 43 iL~~l~~~~-~t~~eLa~~l--------~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 43 ILMLLSEES-LTNSELARRL--------NVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHTTCC-CCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHhCC-CCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCeEecc
Confidence 333444555 8877776653 467888999999999999999865
No 209
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=24.76 E-value=43 Score=33.04 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=25.2
Q ss_pred HHHHHHhhc-CCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 004939 560 QAATLLLFN-TSDRLSYSEIMTQLNLTHDDLVRLLHSL 596 (722)
Q Consensus 560 Q~~ILl~fn-~~~~~t~~ei~~~t~i~~~~l~~~L~~L 596 (722)
...|+-.+. ..+.+|++||++.|||..+++..+|+.|
T Consensus 195 ~~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l 232 (278)
T 2pq8_A 195 SWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSL 232 (278)
T ss_dssp HHHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHC
Confidence 344554443 3358999999999999999999999988
No 210
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=24.59 E-value=88 Score=29.86 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=33.0
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 004939 560 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 597 (722)
Q Consensus 560 Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 597 (722)
...+|-++-++..+|+++|+..+|++.+.+.+.|..+-
T Consensus 24 ~~~llr~la~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 24 LVPLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp HHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred HHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 34566677788899999999999999999999999884
No 211
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=24.27 E-value=45 Score=27.54 Aligned_cols=54 Identities=7% Similarity=0.038 Sum_probs=40.2
Q ss_pred hhheeeccccCccC-ChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCC-CCCcee
Q 004939 658 DAALVRIMKSRKVL-GHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKE-NPNMFR 719 (722)
Q Consensus 658 ~A~IVRimK~~k~l-~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~-d~~~y~ 719 (722)
...|+..++....+ +..+|.. .|..+..-|.++|..|.+.|+|++... ...+|+
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~--------~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V 85 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIAD--------RVGITRSVIVNALRKLESAGVIESRSLGMKGTYI 85 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHH--------HHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEE
T ss_pred HHHHHhhhcCCCcCCCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEE
Confidence 45555777776666 7777655 377899999999999999999998762 245554
No 212
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=23.72 E-value=16 Score=29.49 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=33.7
Q ss_pred ccCc-cCChhhHHHHHHHHhccCCCCChhH-HHHHHHhhhhhhhhcccCCCCCce
Q 004939 666 KSRK-VLGHQQLVSECVEQLSRMFKPDIKA-IKKRMEDLITRDYLERDKENPNMF 718 (722)
Q Consensus 666 K~~k-~l~~~~L~~~v~~~l~~~F~~~~~~-ik~~Ie~Liereyl~r~~~d~~~y 718 (722)
...+ .++..+|... +..+... +-+.|..|.++|||++++.|+...
T Consensus 25 ~~~~~~~t~~eLa~~--------l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~ 71 (95)
T 2pg4_A 25 EKKGYEPSLAEIVKA--------SGVSEKTFFMGLKDRLIRAGLVKEETLSYRVK 71 (95)
T ss_dssp HHTTCCCCHHHHHHH--------HCCCHHHHHTTHHHHHHHTTSEEEEEEETTEE
T ss_pred HhcCCCCCHHHHHHH--------HCCCchHHHHHHHHHHHHCCCeecCCCCCCeE
Confidence 3444 6887777664 3357888 999999999999999887776543
No 213
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=23.57 E-value=70 Score=29.51 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=32.6
Q ss_pred HHHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhh
Q 004939 559 YQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSC 598 (722)
Q Consensus 559 ~Q~~ILl~fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 598 (722)
-+..||.++.+ ...+|..||++.+|++...+.+.|..|..
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34556766664 45699999999999999999999999864
No 214
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.55 E-value=56 Score=28.12 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=34.5
Q ss_pred hhheeecc-ccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccC
Q 004939 658 DAALVRIM-KSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 712 (722)
Q Consensus 658 ~A~IVRim-K~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~ 712 (722)
+..|...+ ...+.++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l--------~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSV--------GVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHh--------CCChhhHHHHHHHHHHCCCeeecC
Confidence 33444455 556677777776543 467888999999999999999964
No 215
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=23.53 E-value=43 Score=28.56 Aligned_cols=49 Identities=4% Similarity=0.188 Sum_probs=32.4
Q ss_pred eeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhccc--CCCCCc
Q 004939 661 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD--KENPNM 717 (722)
Q Consensus 661 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~--~~d~~~ 717 (722)
|...+...+.++..+|... +..+.+.+-+.|..|.++|||+|. +.|+..
T Consensus 38 iL~~l~~~~~~~~~ela~~--------l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~ 88 (139)
T 3bja_A 38 VIQVLAKSGKVSMSKLIEN--------MGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRE 88 (139)
T ss_dssp HHHHHHHSCSEEHHHHHHH--------CSSCCTTHHHHHHHHHHTTSEEEEECSSCTTC
T ss_pred HHHHHHHcCCcCHHHHHHH--------HCCChhHHHHHHHHHHHCCCeeeccCCCCCce
Confidence 3334444555666665442 455777799999999999999984 444433
No 216
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=23.41 E-value=80 Score=29.87 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=35.3
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 562 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 562 ~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+|+.+-.+++.++..+|++.+|++...+.++|..|. +.+++.+.
T Consensus 10 ~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le--~~GlV~r~ 53 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL--AEELLIKD 53 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEEe
Confidence 344444566789999999999999999999999996 45777664
No 217
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=23.04 E-value=87 Score=32.22 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=32.9
Q ss_pred HhhcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 565 LLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 565 l~fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
..+.+ .+++|++||++.+|+++..+.+.|..|+. .+++.+.
T Consensus 42 d~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~--~g~l~~~ 83 (363)
T 3dp7_A 42 QLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLT--IGTILLE 83 (363)
T ss_dssp HHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred HHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhh--CCCeEec
Confidence 33444 46899999999999999999999999875 4677653
No 218
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.94 E-value=74 Score=27.83 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=28.6
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 596 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 596 (722)
++.-|-.|+.++ ..++|++||++.+|++...++..+..-
T Consensus 110 L~~~~r~v~~~~--~~g~s~~EIA~~lgis~~tV~~~~~ra 148 (164)
T 3mzy_A 110 FSKFEKEVLTYL--IRGYSYREIATILSKNLKSIDNTIQRI 148 (164)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 345566666543 357899999999999999887766543
No 219
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=22.85 E-value=1.9e+02 Score=27.43 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=42.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
.+..|..|+-+..+.+.+|..+++..+|.+....+..|..+. +-+++...
T Consensus 152 ~~~~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e--~~G~l~~D 201 (218)
T 3cuq_B 152 EEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAE--KMGHLCRD 201 (218)
T ss_dssp GGGGHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred hHHHHHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHH--HcCCEEEE
Confidence 346889998877778899999999999999999999998876 45777765
No 220
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=22.64 E-value=50 Score=26.57 Aligned_cols=53 Identities=11% Similarity=0.203 Sum_probs=39.6
Q ss_pred hhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccCCCCCcee
Q 004939 658 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 719 (722)
Q Consensus 658 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~~d~~~y~ 719 (722)
...|++.+.. +.++..+|...+ ..+.+.+-+.+..|.+.|+|++..+.+..|.
T Consensus 25 r~~Il~~L~~-~~~~~~ela~~l--------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y 77 (98)
T 3jth_A 25 RLQILCMLHN-QELSVGELCAKL--------QLSQSALSQHLAWLRRDGLVTTRKEAQTVYY 77 (98)
T ss_dssp HHHHHHHTTT-SCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECCTTCCEE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEE
Confidence 3456666665 778887777654 3577889999999999999998876555543
No 221
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=22.45 E-value=91 Score=28.91 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=37.3
Q ss_pred EcHHHHHHHHhhc----C-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 556 VSTYQAATLLLFN----T-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 556 ~s~~Q~~ILl~fn----~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+|.-|..||.... + ..+.|+.||++.+|++...+.++|..|. +.+.+.+.
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le--~~G~i~~~ 57 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALE--KKGYIERK 57 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECC
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHH--HCCCEEec
Confidence 3566777776543 2 2368999999999999999999999996 34565554
No 222
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=22.41 E-value=35 Score=29.64 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=36.6
Q ss_pred hhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccC
Q 004939 658 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 712 (722)
Q Consensus 658 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~ 712 (722)
+..|.+.+.....++..+|-..+ ..+...+.+++..|.+.|+|+|..
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKL--------GISETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEeccc
Confidence 44566667666778887777653 458899999999999999998754
No 223
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=22.28 E-value=32 Score=29.79 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=35.3
Q ss_pred hhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccC
Q 004939 658 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 712 (722)
Q Consensus 658 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~ 712 (722)
+..|...+...+.++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 38 q~~vL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 38 GYIVLMAIENDEKLNIKKLGERV--------FLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp HHHHHHHSCTTCEEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCcCHHHHHHHH--------CCChhhHHHHHHHHHHCCCeEecC
Confidence 44455555566777777766643 458889999999999999999865
No 224
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=21.91 E-value=34 Score=27.58 Aligned_cols=29 Identities=0% Similarity=-0.111 Sum_probs=23.1
Q ss_pred CCCCChhHHHHHHHhhhhhhhhcccCCCCC
Q 004939 687 MFKPDIKAIKKRMEDLITRDYLERDKENPN 716 (722)
Q Consensus 687 ~F~~~~~~ik~~Ie~Liereyl~r~~~d~~ 716 (722)
.+..+.+.+-+.|..|.++||| +++.|+.
T Consensus 39 ~l~i~~~tvs~~l~~Le~~Glv-~~~~d~R 67 (95)
T 2qvo_A 39 KVNSPHSYVWLIIKKFEEAKMV-ECELEGR 67 (95)
T ss_dssp HSSSCHHHHHHHHHHHHHTTSE-EEEEETT
T ss_pred HHCcCHHHHHHHHHHHHHCcCc-cCCCCCC
Confidence 3567889999999999999999 5555544
No 225
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=21.76 E-value=39 Score=27.64 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=32.9
Q ss_pred hhcCCCCc-CHHHHHHHhCCCHHHHHHHHhHhhhcccceeecCC
Q 004939 566 LFNTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 608 (722)
Q Consensus 566 ~fn~~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~ 608 (722)
.+...+.+ |..+|++.+|++...+.++|..|. ..+++...+
T Consensus 28 ~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~--~~Gli~~~~ 69 (102)
T 1v4r_A 28 ELAPGDTLPSVADIRAQFGVAAKTVSRALAVLK--SEGLVSSRG 69 (102)
T ss_dssp SCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTT--TSSCCEEET
T ss_pred CCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeC
Confidence 34555677 999999999999999999999996 356776543
No 226
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.39 E-value=1e+02 Score=26.64 Aligned_cols=52 Identities=13% Similarity=0.307 Sum_probs=41.4
Q ss_pred EEEcHHHHHHHHhhcCC--CCcCHHHHHHHh-----CCCHHHHHHHHhHhhhcccceeecC
Q 004939 554 LIVSTYQAATLLLFNTS--DRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 554 l~~s~~Q~~ILl~fn~~--~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+.+|..-..||..+.+. ..+|.+||.+.+ +++...+-++|..|. ..+++.+.
T Consensus 14 ~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~ 72 (136)
T 1mzb_A 14 LKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFE--AAGLVVRH 72 (136)
T ss_dssp CCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHH--HCCcEEEE
Confidence 34567777888777543 589999999998 899999999999997 45777654
No 227
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=21.33 E-value=49 Score=28.32 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=32.6
Q ss_pred hheeeccccCc--cCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccC
Q 004939 659 AALVRIMKSRK--VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 712 (722)
Q Consensus 659 A~IVRimK~~k--~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~ 712 (722)
..|...+.... .++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~~--------l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLESE--------FSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHH--------HCCCcchHHHHHHHHHHCCCEEeeC
Confidence 33444444444 6777776553 3457888999999999999999854
No 228
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=21.27 E-value=1.2e+02 Score=23.32 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=29.4
Q ss_pred HHHHHHhhcCCC--CcCHHHHHHHhCCCHHHHHHHHhHh
Q 004939 560 QAATLLLFNTSD--RLSYSEIMTQLNLTHDDLVRLLHSL 596 (722)
Q Consensus 560 Q~~ILl~fn~~~--~~t~~ei~~~t~i~~~~l~~~L~~L 596 (722)
-..|+-..++.+ ..++++|+..+|++.+++.++|.-+
T Consensus 34 a~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~l 72 (76)
T 2k9l_A 34 ALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKV 72 (76)
T ss_dssp HHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 345566677766 6789999999999999999888755
No 229
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=20.99 E-value=43 Score=29.01 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=31.8
Q ss_pred CccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhccc--CCCCCc
Q 004939 668 RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD--KENPNM 717 (722)
Q Consensus 668 ~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~--~~d~~~ 717 (722)
.+.++..+|...+ ..+.+.+-+.+..|.++|||+|. +.|+..
T Consensus 39 ~~~~t~~ela~~l--------~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~ 82 (152)
T 1ku9_A 39 DKPLTISDIMEEL--------KISKGNVSMSLKKLEELGFVRKVWIKGERKN 82 (152)
T ss_dssp SSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECCTTCSSC
T ss_pred CCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEecCCCceE
Confidence 4667877776643 35788899999999999999997 344443
No 230
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=20.82 E-value=60 Score=26.78 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=34.1
Q ss_pred HHHhhcCCCCc-CHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 563 TLLLFNTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 563 ILl~fn~~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
|+..+..++.+ |..+|++.+|++...+.++|..|.. .+++...
T Consensus 33 I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~--~GlI~~~ 76 (102)
T 2b0l_A 33 IFEELDGNEGLLVASKIADRVGITRSVIVNALRKLES--AGVIESR 76 (102)
T ss_dssp HTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 34555556666 9999999999999999999999974 4677654
No 231
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=20.60 E-value=48 Score=29.22 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=36.5
Q ss_pred hhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhccc
Q 004939 658 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 711 (722)
Q Consensus 658 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~ 711 (722)
+-.|.+.+.....++..+|-.. +..+...+.++|..|.++|+|.|-
T Consensus 11 d~~il~~L~~~~~~s~~ela~~--------lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 11 DMQLVKILSENSRLTYRELADI--------LNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHH--------TTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3456677777778888877664 457889999999999999999863
No 232
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=20.48 E-value=39 Score=28.87 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=33.7
Q ss_pred hhheeeccccCccCChhhHHHHHHHHhccCCCCChhHHHHHHHhhhhhhhhcccC
Q 004939 658 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 712 (722)
Q Consensus 658 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyl~r~~ 712 (722)
+..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 31 ~~~iL~~l~~~~~~~~~ela~~l--------~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 31 QVACLLRIHREPGIKQDELATFF--------HVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHHHSTTCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeec
Confidence 33444445455667776666543 457888999999999999999954
No 233
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=20.31 E-value=77 Score=23.36 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhHhcCChhHHHHHHHHHHHHHHHHHch
Q 004939 184 TGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSH 221 (722)
Q Consensus 184 t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~ 221 (722)
|.+|-.++-.+...-.+.+.-+.++++.+.+|..|++.
T Consensus 6 ~~eYL~qLlkdKk~l~~~p~~f~HlerLLdeEI~RVR~ 43 (60)
T 3k6t_A 6 TVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRV 43 (60)
T ss_dssp CHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 34455554444333445566778888888888888764
No 234
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=20.31 E-value=1.3e+02 Score=25.20 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=28.4
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 004939 556 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 596 (722)
Q Consensus 556 ~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 596 (722)
++.-|-.|+.+.- ..++|..|||+.+|++...+...+...
T Consensus 26 L~~~~r~vl~l~~-~~g~s~~EIA~~lgiS~~tV~~~l~ra 65 (113)
T 1xsv_A 26 LTNKQRNYLELFY-LEDYSLSEIADTFNVSRQAVYDNIRRT 65 (113)
T ss_dssp SCHHHHHHHHHHH-TSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455555555432 235899999999999999888776654
No 235
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=20.24 E-value=86 Score=27.54 Aligned_cols=40 Identities=10% Similarity=0.245 Sum_probs=31.6
Q ss_pred hhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccceeecC
Q 004939 566 LFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 607 (722)
Q Consensus 566 ~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~ 607 (722)
+....+.+|..+|++.+|++...+.++|..|.. .+++.+.
T Consensus 48 ~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~--~Glv~r~ 87 (155)
T 2h09_A 48 LIREVGEARQVDMAARLGVSQPTVAKMLKRLAT--MGLIEMI 87 (155)
T ss_dssp HHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHH--TTCEEEE
T ss_pred HHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 333445789999999999999999999999964 3666543
No 236
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=20.22 E-value=1.1e+02 Score=29.19 Aligned_cols=41 Identities=12% Similarity=0.018 Sum_probs=35.2
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 004939 555 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 597 (722)
Q Consensus 555 ~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 597 (722)
.+|.-|..||.++- .+.|.+||++.+|++...++.++....
T Consensus 173 ~Lt~~e~~vl~~~~--~g~s~~eIa~~l~is~~tV~~~~~~~~ 213 (234)
T 1l3l_A 173 WLDPKEATYLRWIA--VGKTMEEIADVEGVKYNSVRVKLREAM 213 (234)
T ss_dssp CCCHHHHHHHHHHT--TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788888888774 578999999999999999999998775
No 237
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.12 E-value=82 Score=30.64 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=33.0
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 004939 555 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 597 (722)
Q Consensus 555 ~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 597 (722)
.+|.-|-.|+.++ ..++|.+|||+.+|++...++.++....
T Consensus 197 ~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~ 237 (258)
T 3clo_A 197 ILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNIL 237 (258)
T ss_dssp SSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3567777777776 3679999999999999999988877653
No 238
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=20.04 E-value=93 Score=29.84 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=35.5
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 004939 555 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 597 (722)
Q Consensus 555 ~~s~~Q~~ILl~fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 597 (722)
.+|.-+..||.+.- .+.|.+||++.+|+++..++.++..+.
T Consensus 175 ~Lt~re~~vl~~~~--~G~s~~eIa~~l~is~~tV~~~~~~~~ 215 (237)
T 3szt_A 175 RLTARETEMLKWTA--VGKTYGEIGLILSIDQRTVKFHIVNAM 215 (237)
T ss_dssp CCCHHHHHHHHHHH--TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46788888888875 468999999999999999999998875
Done!