Query 004940
Match_columns 722
No_of_seqs 578 out of 3436
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 15:25:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 8E-113 2E-117 965.7 53.1 573 82-721 67-640 (727)
2 PLN03192 Voltage-dependent pot 100.0 1.3E-68 2.9E-73 641.2 52.9 478 53-620 21-499 (823)
3 KOG0501 K+-channel KCNQ [Inorg 100.0 1.9E-63 4.2E-68 527.0 28.9 511 82-682 207-720 (971)
4 KOG0500 Cyclic nucleotide-gate 100.0 2E-60 4.4E-65 501.3 43.0 426 100-617 4-433 (536)
5 KOG0499 Cyclic nucleotide-gate 100.0 5.5E-55 1.2E-59 464.8 30.3 424 82-610 217-644 (815)
6 PRK09392 ftrB transcriptional 99.7 1.2E-15 2.5E-20 157.3 19.8 172 483-681 6-184 (236)
7 PRK11753 DNA-binding transcrip 99.6 2.8E-14 6E-19 144.2 20.0 163 493-681 6-179 (211)
8 PRK11161 fumarate/nitrate redu 99.6 4.9E-14 1.1E-18 145.0 18.1 175 486-688 15-208 (235)
9 KOG3713 Voltage-gated K+ chann 99.5 4.1E-13 8.9E-18 145.0 17.8 191 134-416 240-434 (477)
10 PRK10402 DNA-binding transcrip 99.5 3.6E-13 7.8E-18 137.9 16.2 153 501-681 25-180 (226)
11 PRK09391 fixK transcriptional 99.4 2E-12 4.4E-17 132.7 16.8 157 502-688 33-203 (230)
12 COG0664 Crp cAMP-binding prote 99.4 1.2E-11 2.6E-16 124.3 19.5 167 487-680 3-181 (214)
13 cd00038 CAP_ED effector domain 99.4 5.4E-12 1.2E-16 112.9 13.6 111 491-612 1-112 (115)
14 PF00520 Ion_trans: Ion transp 99.4 2.9E-12 6.3E-17 127.0 10.1 193 138-408 1-200 (200)
15 PRK13918 CRP/FNR family transc 99.3 2.8E-11 6.1E-16 121.4 16.6 160 506-688 5-173 (202)
16 PF00027 cNMP_binding: Cyclic 99.3 2.1E-11 4.5E-16 105.2 11.7 89 510-609 2-91 (91)
17 smart00100 cNMP Cyclic nucleot 99.3 4.8E-11 1E-15 107.2 14.6 115 491-614 1-116 (120)
18 TIGR03697 NtcA_cyano global ni 99.3 5.4E-11 1.2E-15 118.3 15.4 142 515-681 1-154 (193)
19 KOG1419 Voltage-gated K+ chann 99.2 2.7E-10 5.9E-15 123.4 14.1 90 356-452 266-355 (654)
20 COG2905 Predicted signal-trans 99.2 7.8E-10 1.7E-14 121.1 17.1 116 483-612 6-121 (610)
21 KOG0614 cGMP-dependent protein 99.2 5.5E-11 1.2E-15 128.1 7.8 129 480-617 268-397 (732)
22 PLN02868 acyl-CoA thioesterase 99.1 6.5E-10 1.4E-14 124.0 13.9 113 483-608 7-119 (413)
23 KOG0614 cGMP-dependent protein 99.1 2.5E-10 5.4E-15 123.1 8.1 129 477-620 147-275 (732)
24 KOG1545 Voltage-gated shaker-l 99.1 1.1E-10 2.4E-15 120.3 4.6 48 363-410 397-444 (507)
25 KOG1113 cAMP-dependent protein 99.0 5.7E-10 1.2E-14 115.8 9.6 121 483-618 121-241 (368)
26 PF07885 Ion_trans_2: Ion chan 98.9 1.7E-08 3.8E-13 85.4 10.4 55 359-413 24-78 (79)
27 KOG1113 cAMP-dependent protein 98.7 5.1E-08 1.1E-12 101.5 8.9 118 478-609 234-351 (368)
28 KOG4390 Voltage-gated A-type K 98.6 6.7E-09 1.5E-13 108.0 -0.2 184 131-413 224-414 (632)
29 KOG1420 Ca2+-activated K+ chan 98.5 1.6E-07 3.4E-12 102.0 5.5 137 357-501 286-427 (1103)
30 PF08412 Ion_trans_N: Ion tran 98.0 5.1E-06 1.1E-10 69.1 2.8 35 82-116 36-70 (77)
31 KOG2968 Predicted esterase of 97.9 2.2E-05 4.7E-10 90.2 7.2 113 499-622 500-613 (1158)
32 PRK10537 voltage-gated potassi 97.9 0.00021 4.5E-09 79.0 14.1 54 359-412 168-221 (393)
33 KOG3684 Ca2+-activated K+ chan 97.8 0.0014 3E-08 71.1 18.8 92 356-455 284-375 (489)
34 PF01007 IRK: Inward rectifier 97.6 0.00028 6.1E-09 76.0 10.0 58 358-415 83-142 (336)
35 KOG2968 Predicted esterase of 97.4 0.00094 2E-08 77.3 11.1 108 503-614 111-219 (1158)
36 PF04831 Popeye: Popeye protei 97.3 0.0095 2.1E-07 55.8 15.3 107 494-610 14-122 (153)
37 KOG1418 Tandem pore domain K+ 97.2 0.00071 1.5E-08 75.4 7.4 60 360-419 116-175 (433)
38 PRK11832 putative DNA-binding 97.0 0.046 1E-06 54.6 17.3 96 499-608 14-110 (207)
39 KOG2302 T-type voltage-gated C 96.8 0.051 1.1E-06 63.8 17.0 86 82-193 1104-1200(1956)
40 KOG3542 cAMP-regulated guanine 95.7 0.014 3.1E-07 65.6 5.5 114 481-608 278-392 (1283)
41 KOG3193 K+ channel subunit [In 95.4 0.021 4.5E-07 62.8 5.1 40 361-400 219-258 (1087)
42 PLN03223 Polycystin cation cha 95.0 5.8 0.00013 49.4 24.4 66 86-155 1169-1234(1634)
43 KOG3827 Inward rectifier K+ ch 94.2 0.23 5.1E-06 53.3 9.3 60 360-419 113-174 (400)
44 KOG4404 Tandem pore domain K+ 94.1 0.008 1.7E-07 62.7 -1.7 47 359-405 80-126 (350)
45 KOG4404 Tandem pore domain K+ 93.7 0.26 5.7E-06 51.7 8.4 57 360-416 187-251 (350)
46 KOG1418 Tandem pore domain K+ 90.2 0.071 1.5E-06 59.3 -0.7 48 358-405 241-296 (433)
47 KOG2301 Voltage-gated Ca2+ cha 88.3 5.7 0.00012 51.3 13.8 47 132-198 870-917 (1592)
48 KOG3542 cAMP-regulated guanine 86.7 0.87 1.9E-05 51.9 4.9 105 470-597 23-127 (1283)
49 KOG3676 Ca2+-permeable cation 86.3 60 0.0013 38.7 19.4 75 372-447 601-682 (782)
50 KOG0498 K+-channel ERG and rel 86.1 12 0.00027 44.5 14.1 44 436-484 402-445 (727)
51 COG4709 Predicted membrane pro 73.2 17 0.00037 35.6 7.9 71 426-498 7-81 (195)
52 KOG2301 Voltage-gated Ca2+ cha 66.9 1.2E+02 0.0027 39.7 15.8 50 95-155 1159-1208(1592)
53 PF08006 DUF1700: Protein of u 65.9 32 0.0007 33.7 8.7 55 426-482 7-65 (181)
54 PF07883 Cupin_2: Cupin domain 64.3 12 0.00026 29.9 4.4 45 510-561 3-48 (71)
55 PRK13290 ectC L-ectoine syntha 60.8 41 0.00088 31.0 7.7 69 508-595 38-106 (125)
56 PF14377 DUF4414: Domain of un 56.0 19 0.00041 32.2 4.5 44 437-480 52-105 (108)
57 KOG1054 Glutamate-gated AMPA-t 53.1 16 0.00035 41.7 4.2 71 362-438 598-668 (897)
58 KOG0500 Cyclic nucleotide-gate 51.8 4E+02 0.0086 30.4 14.5 118 399-545 213-358 (536)
59 PF00060 Lig_chan: Ligand-gate 51.5 15 0.00033 34.1 3.4 59 356-415 41-99 (148)
60 TIGR03037 anthran_nbaC 3-hydro 50.6 41 0.0009 32.3 6.1 62 519-598 43-104 (159)
61 PF13314 DUF4083: Domain of un 49.0 80 0.0017 24.8 6.2 47 385-434 4-56 (58)
62 KOG3609 Receptor-activated Ca2 45.5 4E+02 0.0086 32.4 14.1 75 361-436 555-634 (822)
63 PF07697 7TMR-HDED: 7TM-HD ext 43.0 86 0.0019 31.3 7.6 58 468-526 147-207 (222)
64 PRK13264 3-hydroxyanthranilate 42.3 58 0.0013 31.9 5.7 76 508-601 36-113 (177)
65 PF10011 DUF2254: Predicted me 42.0 1.2E+02 0.0026 33.5 9.0 60 357-416 98-157 (371)
66 PF05899 Cupin_3: Protein of u 39.1 50 0.0011 27.2 4.2 43 511-561 13-55 (74)
67 PF08016 PKD_channel: Polycyst 38.1 4.7E+02 0.01 29.3 13.2 20 177-196 233-253 (425)
68 PLN03192 Voltage-dependent pot 36.8 8.8E+02 0.019 29.8 20.3 44 436-484 357-400 (823)
69 smart00835 Cupin_1 Cupin. This 36.2 1.1E+02 0.0024 28.7 6.6 53 507-561 32-86 (146)
70 KOG4440 NMDA selective glutama 35.8 65 0.0014 37.3 5.5 53 361-413 615-667 (993)
71 COG1917 Uncharacterized conser 30.8 1.2E+02 0.0026 27.7 5.9 50 507-563 45-95 (131)
72 COG0662 {ManC} Mannose-6-phosp 30.1 1.3E+02 0.0028 27.6 5.8 48 506-560 37-85 (127)
73 PF08916 Phe_ZIP: Phenylalanin 27.9 2.5E+02 0.0055 22.3 6.1 49 637-685 2-50 (59)
74 KOG3614 Ca2+/Mg2+-permeable ca 27.7 1.4E+03 0.031 29.5 19.9 32 177-208 853-884 (1381)
75 PF01484 Col_cuticle_N: Nemato 27.4 2.7E+02 0.0058 20.9 6.8 43 388-430 8-50 (53)
76 PRK09108 type III secretion sy 25.1 2.5E+02 0.0054 30.8 7.8 68 381-448 174-241 (353)
77 PF00520 Ion_trans: Ion transp 24.6 5.1E+02 0.011 24.4 9.5 26 258-283 99-124 (200)
78 TIGR01404 FlhB_rel_III type II 23.6 2.5E+02 0.0055 30.6 7.5 65 384-448 174-238 (342)
79 PF12973 Cupin_7: ChrR Cupin-l 23.0 2.4E+02 0.0052 24.0 5.9 64 506-594 25-88 (91)
80 COG1480 Predicted membrane-ass 22.4 3.3E+02 0.0071 32.4 8.3 33 494-526 223-255 (700)
81 COG4016 Uncharacterized protei 21.9 42 0.00092 31.0 0.9 12 709-720 61-72 (165)
82 PF14377 DUF4414: Domain of un 21.0 1.7E+02 0.0036 26.2 4.6 48 437-484 8-68 (108)
83 TIGR03404 bicupin_oxalic bicup 20.3 2.7E+02 0.0058 30.7 7.0 52 507-561 69-121 (367)
84 PF13623 SurA_N_2: SurA N-term 20.3 2.4E+02 0.0053 26.6 5.8 44 391-434 10-66 (145)
85 COG1422 Predicted membrane pro 20.1 3.7E+02 0.008 26.9 7.1 40 396-435 48-90 (201)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-113 Score=965.70 Aligned_cols=573 Identities=52% Similarity=0.868 Sum_probs=512.6
Q ss_pred CceeCCCChhHHHHHHHHHHHHHHHHHhhhhccccccccCCccccccCCcchhhHHHHHHHHHHHHHHHHHHhheeeEEe
Q 004940 82 KRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIA 161 (722)
Q Consensus 82 ~~ii~P~s~~~~~W~~~~~i~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~F~t~y~~ 161 (722)
++||||+|++++.||++++++|+|+++++|++|+|+..++...| +|..+...++++++++|+||++||+++|+|||++
T Consensus 67 ~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~ 144 (727)
T KOG0498|consen 67 KWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVD 144 (727)
T ss_pred ceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEEC
Confidence 77999999999999999999999999999999999999988899 7888999999999999999999999999999999
Q ss_pred cCccccCCCeeecCHHHHHHHHHhhhhhhhhhhccChhHHHHhhhccCCCCCchhhh-hhhHHHHHHhhhhhHHHHhhhh
Q 004940 162 RSSRVFGRGELVDDPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVA-KEMLKTIIFCQYVPRIARIYPL 240 (722)
Q Consensus 162 ~~s~~~~~G~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~-~~~lr~i~~~qyl~Rl~ri~~l 240 (722)
++|+ ++|.||++||+||+++||++|++|++|++++++|.++ ++..+.. ...+..+.++||||||.|+.++
T Consensus 145 ~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~----~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l 215 (727)
T KOG0498|consen 145 PSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI----GSTSLALESTILVGILLLQRLPRLRRVIPL 215 (727)
T ss_pred CCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee----cccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9974 7999999999999999999999999999999998776 2333333 3477888889999999999999
Q ss_pred hhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHhhhhcCCCCCCccccccCCccCccccccc
Q 004940 241 YNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLH 320 (722)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wy~l~~~~~~~cw~~~c~~~~~~~~c~~~~~~~~~~~~~~~Wl~ 320 (722)
+.++++..+++.+++|+++++++++|||++||.||+||+++.+++..||.++ +|+.
T Consensus 216 ~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~------------------------tw~~ 271 (727)
T KOG0498|consen 216 FARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA------------------------TWLG 271 (727)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc------------------------cccc
Confidence 9999999999999999999999999999999999999999999999999764 3433
Q ss_pred cccCCCCCcccccCCccccchhHhhhhcccccCCChhHHHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHH
Q 004940 321 GSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVL 400 (722)
Q Consensus 321 ~~~~~~~~~~~~~~~~f~~gi~~~a~~~~~~~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~l 400 (722)
..+...++.+ ..|+||+|.+| .+|++|||||++||||+|||+.+|+|..|++|+|++|++|+++
T Consensus 272 ~l~~~~~~~~----~~~~fg~~s~~------------~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL 335 (727)
T KOG0498|consen 272 SLGRLLSCYN----LSFTFGIYSLA------------LKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLL 335 (727)
T ss_pred ccccccccCc----ccccccchhHH------------HHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHH
Confidence 3211111112 34789987654 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHH
Q 004940 401 FALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRH 480 (722)
Q Consensus 401 fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~ 480 (722)
||++||||++++|+.+.|.++||.|++|+++||++|+||++||+||++|+||+|..++|+||+++|++||++||++|++|
T Consensus 336 ~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~h 415 (727)
T KOG0498|consen 336 FAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRH 415 (727)
T ss_pred HHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCee
Q 004940 481 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 560 (722)
Q Consensus 481 l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 560 (722)
+|.++++++|+|+++|++.+++|+.++++..|+|||+|++|||++++||||++|.+++.+.++|.+ .+...+++||+|
T Consensus 416 L~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~--~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 416 LCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF--FVVAILGPGDFF 493 (727)
T ss_pred HhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce--EEEEEecCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999887744 458999999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 004940 561 GEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRR 640 (722)
Q Consensus 561 Ge~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~ 640 (722)
||+.+.|.++- ++++||+|+|.|+++.|+++||.+++++||+++++++++++|+|+++|++|+++++|++|++
T Consensus 494 GeEl~~~~~~~-------p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~ 566 (727)
T KOG0498|consen 494 GEELLTWCLDL-------PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRR 566 (727)
T ss_pred chHHHHHHhcC-------CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHH
Confidence 97777787731 24789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHhHHHHHhhccccccccCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 004940 641 HSKKKLAQSLQEAEDRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSSGTRLPQRLLPPLIPQKPAEPDFTA 720 (722)
Q Consensus 641 ~~~r~~~~~~~~aeery~~~~~~~p~~~~~vp~~~iASr~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (722)
+.+|+....+...++. ...-...++..+.+.....|+++|+|+.+.++ .+++ +.++.. .++.+|||+||||+.
T Consensus 567 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~~-~~~~~~~~~~p~f~~ 639 (727)
T KOG0498|consen 567 HIKRKGEEELALEEEE-SAIRGDDRGSKSLLRAGILASRFAANGRPPLH--TAAS---RGSSDC-ALLLLQKPADPDFSD 639 (727)
T ss_pred HHHhhccchhhhhcch-hhhccccccchhhhhcccccccccccCCCccc--cccc---cCcccc-ccccCCCCCCCCccc
Confidence 9999877655543221 22222556677888999999999999999985 3322 222233 457899999999986
Q ss_pred C
Q 004940 721 K 721 (722)
Q Consensus 721 ~ 721 (722)
+
T Consensus 640 ~ 640 (727)
T KOG0498|consen 640 A 640 (727)
T ss_pred c
Confidence 5
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.3e-68 Score=641.17 Aligned_cols=478 Identities=20% Similarity=0.325 Sum_probs=398.4
Q ss_pred ccchhhhcccCCcccccccccccccc-cCCCceeCCCChhHHHHHHHHHHHHHHHHHhhhhccccccccCCccccccCCc
Q 004940 53 MGSERIKSWKKPLSFRSHVMQSEKKS-VSEKRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKT 131 (722)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~P~s~~~~~W~~~~~i~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~ 131 (722)
.++.+++++++.+.+..+...+++.. ++.++||+|.++++++||.+++++++|+++++|+.++|. +..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~--~~~--------- 89 (823)
T PLN03192 21 SGSLSLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFL--NAS--------- 89 (823)
T ss_pred CcceehhhcchhhccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHee--CCC---------
Confidence 45667788888888877776655544 555999999999999999999999999999999997652 111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhheeeEEecCccccCCCeeecCHHHHHHHHHhhhhhhhhhhccChhHHHHhhhccCCC
Q 004940 132 LEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVK 211 (722)
Q Consensus 132 ~~~~~~~~~~~~d~~f~iDi~l~F~t~y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~ 211 (722)
....+.+++.++|++|++||+++|+|||++++ .|.+|.||++|++||+++||++|++|++|++.+... +...
T Consensus 90 ~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~-----~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~-~~~~-- 161 (823)
T PLN03192 90 PKRGLEIADNVVDLFFAVDIVLTFFVAYIDPR-----TQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYL-ITGT-- 161 (823)
T ss_pred CCCCeeeHHHHHHHHHHHHHHhheeEEEEeCC-----CcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHH-hcCC--
Confidence 12235678999999999999999999999986 488999999999999999999999999999877542 2111
Q ss_pred CCchhhhhhhHHHHHHhhhhhHHHHhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHH
Q 004940 212 GPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRD 291 (722)
Q Consensus 212 ~~~~~~~~~~lr~i~~~qyl~Rl~ri~~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wy~l~~~~~~~cw~~ 291 (722)
........+|+++| +.|+.|+.+++..+++... ..+.|...+..+++.++++||+||+||+++...
T Consensus 162 -~~~~~~~~~l~llr----l~Rl~ri~~~~~~le~~~~--~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~------- 227 (823)
T PLN03192 162 -VKLNLSYSLLGLLR----FWRLRRVKQLFTRLEKDIR--FSYFWIRCARLLSVTLFLVHCAGCLYYLIADRY------- 227 (823)
T ss_pred -ccchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------
Confidence 11111223344332 4455555566665554433 223455555556666779999999999987310
Q ss_pred hhhhcCCCCCCccccccCCccCccccccccccCCCCCcccccCCccccchhHhhhhcccccCCChhHHHHHHHHHHHHHh
Q 004940 292 VCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNL 371 (722)
Q Consensus 292 ~c~~~~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~~f~~gi~~~a~~~~~~~~~~~~~~Y~~slyw~l~tl 371 (722)
...+.+|+.... .++ .+.+++.+|++|+||+++||
T Consensus 228 --------------------~~~~~~Wi~~~~-------------~~~------------~~~s~~~~Yi~slYwai~Tm 262 (823)
T PLN03192 228 --------------------PHQGKTWIGAVI-------------PNF------------RETSLWIRYISAIYWSITTM 262 (823)
T ss_pred --------------------CCCCCchHHHhh-------------hcc------------ccCcHHHHHHHHHHHHHHHH
Confidence 022457875311 011 35789999999999999999
Q ss_pred cccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004940 372 SSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQ 451 (722)
Q Consensus 372 stvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~ 451 (722)
|||||||++|.|..|++|++++|++|+++|||+||+|++++.+.+.+.++|+++++.+++||+++++|++|++||++|++
T Consensus 263 tTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~ 342 (823)
T PLN03192 263 TTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMC 342 (823)
T ss_pred hhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHHhhCChhHHHHHHHHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEE
Q 004940 452 YKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFV 531 (722)
Q Consensus 452 ~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI 531 (722)
|+|+. ++.+++++++.||++||.+|+.+++.+.++++++|++++++++.+++..++.+.|+|||.|+.|||.++++|||
T Consensus 343 ~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I 421 (823)
T PLN03192 343 LRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIV 421 (823)
T ss_pred HHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEE
Confidence 99986 46889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHH
Q 004940 532 MRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLH 611 (722)
Q Consensus 532 ~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~ 611 (722)
.+|.|+++..+++++.+ +..+++|++|||.+++. .. +++.+++|.++|+++.|++++|.++++++|+..
T Consensus 422 ~~G~V~i~~~~~~~e~~--l~~l~~Gd~FGE~~~l~-~~--------p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~ 490 (823)
T PLN03192 422 VSGEVEIIDSEGEKERV--VGTLGCGDIFGEVGALC-CR--------PQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDN 490 (823)
T ss_pred EecEEEEEEecCCccee--eEEccCCCEecchHHhc-CC--------CCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHH
Confidence 99999998777777755 78999999999998852 22 257799999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 004940 612 SKQLQHAFR 620 (722)
Q Consensus 612 ~~~l~~~~r 620 (722)
..+++.+.+
T Consensus 491 ~~i~~~~l~ 499 (823)
T PLN03192 491 VVILKNFLQ 499 (823)
T ss_pred HHHHHHHHH
Confidence 887777665
No 3
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-63 Score=526.95 Aligned_cols=511 Identities=20% Similarity=0.312 Sum_probs=415.2
Q ss_pred CceeCCCChhHHHHHHHHHHHHHHHHHhhhhccccccccCCccccccCCcchhhHHHHHHHHHHHHHHHHHHhheeeEEe
Q 004940 82 KRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIA 161 (722)
Q Consensus 82 ~~ii~P~s~~~~~W~~~~~i~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~F~t~y~~ 161 (722)
+.||--.+.|+-+||++++++.+|+++++|+.++|- +.. .....|.+++.++|++|++||+++|+|.|+.
T Consensus 207 PHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFK--nk~--------~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVG 276 (971)
T KOG0501|consen 207 PHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFK--NKQ--------RNNVSWLVVDSIVDVIFFVDIVLNFHTTFVG 276 (971)
T ss_pred CeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeec--ccc--------cCceeEEEecchhhhhhhhhhhhhcceeeec
Confidence 779999999999999999999999999999995543 221 1245677899999999999999999999999
Q ss_pred cCccccCCCeeecCHHHHHHHHHhhhhhhhhhhccChhHHHHhhhccCCCCCchhhhhhhHHHHHHhhhhhHHHHhhhhh
Q 004940 162 RSSRVFGRGELVDDPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIYPLY 241 (722)
Q Consensus 162 ~~s~~~~~G~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~lr~i~~~qyl~Rl~ri~~l~ 241 (722)
| .||+|.||+.|..+|+|+||++|++|++|++++..+.-.. .+ .-.....|+ +.||+|+.|..
T Consensus 277 P------gGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~d--eg--I~SLFSaLK-------VVRLLRLGRVa 339 (971)
T KOG0501|consen 277 P------GGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDD--EG--IGSLFSALK-------VVRLLRLGRVA 339 (971)
T ss_pred C------CCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhccc--cc--HHHHHHHHH-------HHHHHHHHHHH
Confidence 9 5999999999999999999999999999999887643211 22 223445566 56788888877
Q ss_pred hHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHhhhhcCCCCCCccccccCCccCcccccccc
Q 004940 242 NDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHG 321 (722)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wy~l~~~~~~~cw~~~c~~~~~~~~c~~~~~~~~~~~~~~~Wl~~ 321 (722)
+++.++.. +..+..+..+..|+++.||+||+||.++....- +-.++....++|+..
T Consensus 340 RKLD~YlE----YGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~--------------------~~~~n~i~~dsWL~k 395 (971)
T KOG0501|consen 340 RKLDHYLE----YGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVR--------------------DEMDNTIQPDSWLWK 395 (971)
T ss_pred HHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHhheeccchhee--------------------cccccccccchHHHH
Confidence 77776543 333333445557889999999999999842110 001122446789765
Q ss_pred ccCCCCCcccccCCccccchhHhhhhcccc-cCCChhHHHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHH
Q 004940 322 SCPFISPDEIKNSSMFNFGISIDALQSRVV-EEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVL 400 (722)
Q Consensus 322 ~~~~~~~~~~~~~~~f~~gi~~~a~~~~~~-~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~l 400 (722)
... + ..++|+|..- ..|.+ ..++--..|+.|+|+..+.|||||+|++.|.+..|.+|++.+|++|.++
T Consensus 396 La~-----~--~~tpY~~~~s----~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLL 464 (971)
T KOG0501|consen 396 LAN-----D--IGTPYNYNLS----NKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALL 464 (971)
T ss_pred HHh-----h--cCCCceeccC----CCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHH
Confidence 431 1 1256666411 12323 3567888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHH
Q 004940 401 FALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRH 480 (722)
Q Consensus 401 fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~ 480 (722)
||-++|+|++++|+++.....|.+.+..+.+||+-..+|+.|.+||.+|.--.|..++|+|.+++|.-+|+++|.+|+.|
T Consensus 465 YAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVH 544 (971)
T KOG0501|consen 465 YATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVH 544 (971)
T ss_pred HHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCee
Q 004940 481 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 560 (722)
Q Consensus 481 l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 560 (722)
+..+.....|.|+-.++..+.+++..++..+..|||.|++.||..+.++||++|.+++...++ .+.+++.||+|
T Consensus 545 LNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE------VVAILGKGDVF 618 (971)
T KOG0501|consen 545 LNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE------VVAILGKGDVF 618 (971)
T ss_pred cchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc------EEEEeecCccc
Confidence 999999999999999999999999999999999999999999999999999999999987543 27999999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 004940 561 GEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRR 640 (722)
Q Consensus 561 Ge~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~ 640 (722)
|+.. |.-. ....+.++++|++.|.+..|.++.+.++++-|..+++-.-+.+. +.-+.-.|
T Consensus 619 GD~F--WK~~-----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl~-------------LTyNLr~R 678 (971)
T KOG0501|consen 619 GDEF--WKEN-----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNLT-------------LTYNLRHR 678 (971)
T ss_pred hhHH--hhhh-----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhcee-------------eEeeccce
Confidence 9984 4322 23346789999999999999999999999877755442222211 22335566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc--ccchhHHHHhHHHH
Q 004940 641 HSKKKLAQSLQEAEDRLQDALATEAGAL--TSLGATMYASKFAA 682 (722)
Q Consensus 641 ~~~r~~~~~~~~aeery~~~~~~~p~~~--~~vp~~~iASr~a~ 682 (722)
..-|+++...++.|+|... ++.|.+. +..|...+-+||-.
T Consensus 679 iiFRKvaDVKrEkE~~~kr--KNE~~L~lp~DHpvRklf~rfr~ 720 (971)
T KOG0501|consen 679 IIFRKVADVKREKELRAKR--KNEPKLTLPNDHPVRKLFQRFRQ 720 (971)
T ss_pred eeeeehhhhhhhHHHHHhh--cCCCCCCCCCCchHHHHHHHHhh
Confidence 7788999999988888543 4555443 67777777777754
No 4
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2e-60 Score=501.32 Aligned_cols=426 Identities=25% Similarity=0.427 Sum_probs=359.2
Q ss_pred HHHHHHHHHhhhhccccccccCCccccccCCcchhhHHHHHHHHHHHHHHHHHHhheeeEEecCccccCCCeeecCHHHH
Q 004940 100 VLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAI 179 (722)
Q Consensus 100 ~i~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~F~t~y~~~~s~~~~~G~lV~d~~~I 179 (722)
.+.++|++++++..+.|+.++ ......|..+++++|++|++||++++||||++ +|.+|.|-.+.
T Consensus 4 s~~vLYN~~~li~r~~F~di~---------~~y~~~wl~ld~~~D~vyllDi~v~~R~gyle-------qGllV~~~~Kl 67 (536)
T KOG0500|consen 4 SLGVLYNMIVLIVRAAFDDIQ---------SSYLENWLPLDYLFDFVYLLDIIVRSRTGYLE-------QGLLVKDTSKL 67 (536)
T ss_pred EEehHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh-------cCeeehhhHHH
Confidence 356788899988877777553 33456788999999999999999999999999 69999999999
Q ss_pred HHHHHhh-hhhhhhhhccChhHHHHhhhccCCCCCchhhhhhhHHHHHHhhhhhHHHHhhhhhhHhhhhhhhhhhHHHHH
Q 004940 180 AKRYLMS-YFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAG 258 (722)
Q Consensus 180 a~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~lr~i~~~qyl~Rl~ri~~l~~~l~~~~~~~~~~~~~~ 258 (722)
++||.++ .|.+|++|++|++.+.+|. ++. ...| +.||+|++|++..+.++.+- |.|..
T Consensus 68 ~~hY~~s~~f~lD~l~liP~D~l~~~~------~~~-----~~~r-------~nRllk~yRl~~F~~rTetr---T~~Pn 126 (536)
T KOG0500|consen 68 RKHYVHSTQFKLDVLSLIPLDLLLFKD------GSA-----SLER-------LNRLLKIYRLFEFFDRTETR---TTYPN 126 (536)
T ss_pred HHHHHHhhhhhhhhhhhcchhHHhhcC------Ccc-----hHHH-------HHHHHHHHHHHHHHHHhccc---cCCch
Confidence 9999998 8999999999999988752 222 1222 46677777777777766543 32322
Q ss_pred H--HHHHHHH-HHHHHHHHHHHHhhhhccccchHHHhhhhcCCCCCCccccccCCccCccccccccccCCCCCcccccCC
Q 004940 259 A--ALNLFLY-MLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSS 335 (722)
Q Consensus 259 ~--~~~ll~~-~l~~H~~~c~wy~l~~~~~~~cw~~~c~~~~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~ 335 (722)
+ +.+++.+ +++.||.||+||++|.. .+.+.++|.+.. ..+|
T Consensus 127 ~fri~~lv~~~~ilfHWNaClYf~iS~~---------------------------~g~~~d~wvY~~--i~d~------- 170 (536)
T KOG0500|consen 127 AFRISKLVHYCLILFHWNACLYFLISKA---------------------------IGFTTDDWVYPK--INDP------- 170 (536)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhhHh---------------------------cCccccccccCC--ccCc-------
Confidence 2 4555554 46899999999999852 123456687632 1111
Q ss_pred ccccchhHhhhhcccccCCChhHHHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004940 336 MFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLEST 415 (722)
Q Consensus 336 ~f~~gi~~~a~~~~~~~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~ 415 (722)
.|+.. ...++.++|++|+||+..||||+|. .-+|.+..|.+|.|+-.++|+++||.++|++++++.++
T Consensus 171 --~~~~c---------~~~n~~ReY~~S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm 238 (536)
T KOG0500|consen 171 --EFATC---------DAGNLTREYLYSLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM 238 (536)
T ss_pred --ccccc---------chhHHHHHHHHHHHHHhhhhhhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence 11100 1246899999999999999999996 45688899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHhHHHhccCccccCC
Q 004940 416 TVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKM 495 (722)
Q Consensus 416 ~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~~l~~v~lF~~l 495 (722)
+....||+.+|+.+++||+.|++|..|+.||.+||.|.|.+.+..||+++++.||+.|+.+|+.+++.+.|+++++|+.+
T Consensus 239 na~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~c 318 (536)
T KOG0500|consen 239 NAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDC 318 (536)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCC
Q 004940 496 DDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSS 575 (722)
Q Consensus 496 s~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~ 575 (722)
.+..+.+++-.+++..|.|||+|++.||.+.+||+|.+|.+.+...+++++ ...+++|++|||.++++. .+. -
T Consensus 319 e~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~----~~~L~~G~~FGEisIlni-~g~--~ 391 (536)
T KOG0500|consen 319 EAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV----FVTLKAGSVFGEISILNI-KGN--K 391 (536)
T ss_pred chhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE----EEEecCCceeeeeEEEEE-cCc--c
Confidence 999999999999999999999999999999999999999999998877665 689999999999998643 322 2
Q ss_pred CCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHH
Q 004940 576 NRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 617 (722)
Q Consensus 576 ~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~ 617 (722)
+..+|+++++++..+++++|+++|+.+.+++||+-...+.++
T Consensus 392 ~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 392 NGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred cCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 466799999999999999999999999999999976655543
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-55 Score=464.80 Aligned_cols=424 Identities=23% Similarity=0.387 Sum_probs=362.8
Q ss_pred CceeCCCC-hhHHHHHHHHHHHHHHHHHhhhhccccccccCCccccccCCcchhhHHHHHHHHHHHHHHHHH-HhheeeE
Q 004940 82 KRILDPQG-PFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRII-FQFRTGF 159 (722)
Q Consensus 82 ~~ii~P~s-~~~~~W~~~~~i~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~-l~F~t~y 159 (722)
...|||++ +++..|-.+..++..|++|++|+...||+....| ...|.+.++++|++|++||+ ++=|.-|
T Consensus 217 ~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN---------~~~Wli~Dy~cDiIYllDmlf~q~Rl~f 287 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADN---------IHYWLIADYICDIIYLLDMLFIQPRLQF 287 (815)
T ss_pred CcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccccc---------chhhhhHHHHhhHHHHHHHhhhhhhhee
Confidence 56899999 9999999999999999999999999999985443 45688999999999999995 5777777
Q ss_pred EecCccccCCCeeecCHHHHHHHHHhh-hhhhhhhhccChhHHHHhhhccCCCCCchhhhhhhHHHHHHhhhhhHHHHhh
Q 004940 160 IARSSRVFGRGELVDDPKAIAKRYLMS-YFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIY 238 (722)
Q Consensus 160 ~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~lr~i~~~qyl~Rl~ri~ 238 (722)
.- .|.+|.|.+...+||+++ .|-+|++|++|+++++.... .. -++| ++|++++-
T Consensus 288 vr-------gG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G-----~~------p~wR-------~~R~lK~~ 342 (815)
T KOG0499|consen 288 VR-------GGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFG-----FN------PMWR-------ANRMLKYT 342 (815)
T ss_pred ee-------CceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhc-----cc------hhhh-------hhhHHHHH
Confidence 76 599999999999999998 89999999999998876431 11 2334 45555554
Q ss_pred hhhhHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccccchHHHhhhhcCCCCCCccccccCCccCcccc
Q 004940 239 PLYNDVKRTSGILTETAWAGAALNLFLYM-LASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNT 317 (722)
Q Consensus 239 ~l~~~l~~~~~~~~~~~~~~~~~~ll~~~-l~~H~~~c~wy~l~~~~~~~cw~~~c~~~~~~~~c~~~~~~~~~~~~~~~ 317 (722)
.++........+ ...+++..+...+.|| +++|+.+|+||..+.. ++.+.+.
T Consensus 343 sF~e~~~~Le~i-~s~~y~~RV~rT~~YmlyilHinacvYY~~Say---------------------------qglG~~r 394 (815)
T KOG0499|consen 343 SFFEFNHHLESI-MSKAYIYRVIRTTGYLLYILHINACVYYWASAY---------------------------QGLGTTR 394 (815)
T ss_pred HHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhh---------------------------cccccce
Confidence 333222222222 2334444455555666 5899999999998732 1245678
Q ss_pred ccccccCCCCCcccccCCccccchhHhhhhcccccCCChhHHHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHH
Q 004940 318 LLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISG 397 (722)
Q Consensus 318 Wl~~~~~~~~~~~~~~~~~f~~gi~~~a~~~~~~~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G 397 (722)
|+++. -...|++|+||++.|++|+| |.-.|++..|++|..+.-+.|
T Consensus 395 WVydg---------------------------------~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mG 440 (815)
T KOG0499|consen 395 WVYDG---------------------------------EGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMG 440 (815)
T ss_pred eEEcC---------------------------------CCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHH
Confidence 87532 22569999999999999999 788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHH
Q 004940 398 LVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDI 477 (722)
Q Consensus 398 ~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I 477 (722)
++.||.+||.|-.++...+...++||..|++.-.||++.++|++.+.||+.+|+|.|..++..||.+++..||..|+.++
T Consensus 441 VFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dl 520 (815)
T KOG0499|consen 441 VFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDL 520 (815)
T ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCC
Q 004940 478 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAG 557 (722)
Q Consensus 478 ~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~G 557 (722)
+...+...+.++.+|++++.+.+..++-+++.+.|-|||+|++.||++.+||+|..|.|.+....+|+. ++..+++|
T Consensus 521 Ai~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~---Vl~tL~~G 597 (815)
T KOG0499|consen 521 AIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTK---VLVTLKAG 597 (815)
T ss_pred eEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCE---EEEEeccc
Confidence 999999999999999999999999999999999999999999999999999999999999987666653 37899999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHH
Q 004940 558 DFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRL 610 (722)
Q Consensus 558 d~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l 610 (722)
++|||++++- ..+ ..+||++|+|...|.++.|+++|+.+++..||+-
T Consensus 598 sVFGEISLLa-igG-----~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~s 644 (815)
T KOG0499|consen 598 SVFGEISLLA-IGG-----GNRRTANVVAHGFANLFVLDKKDLNEILVHYPDS 644 (815)
T ss_pred ceeeeeeeee-ecC-----CCccchhhhhcccceeeEecHhHHHHHHHhCccH
Confidence 9999999853 222 3358999999999999999999999999999953
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.69 E-value=1.2e-15 Score=157.25 Aligned_cols=172 Identities=16% Similarity=0.183 Sum_probs=137.6
Q ss_pred HHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeech
Q 004940 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 562 (722)
Q Consensus 483 ~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe 562 (722)
.+.++.+++|..+++++++.+....+.+.|++|+.|+++|++++++|+|.+|.++++...+|++.+ +.++.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 457889999999999999999999999999999999999999999999999999998766666644 899999999999
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 004940 563 ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHS 642 (722)
Q Consensus 563 ~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~ 642 (722)
.+++ ... ++..+++|+++|+++.+++++|.+++.++|.+....++.+.+ .+.+..
T Consensus 84 ~~~~---~~~------~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~----------------~~~~~~ 138 (236)
T PRK09392 84 AAVV---LDA------PYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAG----------------CYRGLV 138 (236)
T ss_pred HHHh---CCC------CCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHH
Confidence 9764 222 257799999999999999999999999999876655443332 344455
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-----ccccccchh--HHHHhHHH
Q 004940 643 KKKLAQSLQEAEDRLQDALATE-----AGALTSLGA--TMYASKFA 681 (722)
Q Consensus 643 ~r~~~~~~~~aeery~~~~~~~-----p~~~~~vp~--~~iASr~a 681 (722)
++.......++++|+..++... +.....+|+ ++||+.+.
T Consensus 139 ~~~~~~~~~~~~~Rla~~Ll~~~~~~~~~~~~~i~~t~~~iA~~lG 184 (236)
T PRK09392 139 KSLKNQKLRSSAERLANYLLKQSLRQGGADVVTLPYEKRVLASYLG 184 (236)
T ss_pred HHHHHhhcCCHHHHHHHHHHHhccccCCCcEEEeeCCHHHHHHHhC
Confidence 5566666778888888876532 223345664 67888763
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.62 E-value=2.8e-14 Score=144.22 Aligned_cols=163 Identities=16% Similarity=0.219 Sum_probs=127.3
Q ss_pred cCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeechhhhhhhcCC
Q 004940 493 EKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWALDP 571 (722)
Q Consensus 493 ~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~ 571 (722)
+.+++++++.++..++.+.|+||++|+.+|++++++|+|++|.++++..+ +|++.. +.++.+|++||+..++ .+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~---~~ 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---EE 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhhc---cC
Confidence 57899999999999999999999999999999999999999999998654 577654 8899999999999874 11
Q ss_pred CCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004940 572 QSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQ 651 (722)
Q Consensus 572 ~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r~~~~~~~ 651 (722)
.+++..+++|.++|+++.+++++|.+++.++|++....++.+. +.. ....++.....+.
T Consensus 81 -----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~---------------~~l-~~~~~~~~~~~~~ 139 (211)
T PRK11753 81 -----GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMA---------------RRL-QNTSRKVGDLAFL 139 (211)
T ss_pred -----CCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHH---------------HHH-HHHHHHHHHHHhc
Confidence 1235678999999999999999999999999987654433322 222 2344455566777
Q ss_pred HHHHHHHHHHh---hc------cc-ccccchhHHHHhHHH
Q 004940 652 EAEDRLQDALA---TE------AG-ALTSLGATMYASKFA 681 (722)
Q Consensus 652 ~aeery~~~~~---~~------p~-~~~~vp~~~iASr~a 681 (722)
++++|+..++. +. |+ +..++++++||+.+.
T Consensus 140 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lG 179 (211)
T PRK11753 140 DVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRIVG 179 (211)
T ss_pred ChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHHhC
Confidence 88888866532 22 22 234788999999874
No 8
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.58 E-value=4.9e-14 Score=145.00 Aligned_cols=175 Identities=14% Similarity=0.183 Sum_probs=132.7
Q ss_pred hccCccccCCCHHHHHHHHhcceE-EEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeechh
Q 004940 486 LMRVPMFEKMDDQLLDAMCDHLKP-VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEA 563 (722)
Q Consensus 486 l~~v~lF~~ls~~~l~~l~~~l~~-~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~ 563 (722)
+++.+.|..+++++++.+...... +.|+||+.|+++||+++++|+|.+|.|+++..+ +|++.+ +.++.+|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 455555667999999999998864 689999999999999999999999999998764 577755 7888999999986
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 004940 564 LLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSK 643 (722)
Q Consensus 564 ~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~ 643 (722)
.++ .. ....+++|+++|+++.|++++|++++.++|++....++.+.. ......+
T Consensus 93 ~~~---~~-------~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~----------------~~~~~~~ 146 (235)
T PRK11161 93 AIG---SG-------QHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSG----------------EIKGDQE 146 (235)
T ss_pred ccc---CC-------CCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHH----------------HHHHHHH
Confidence 542 11 124489999999999999999999999999876655444322 2233444
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc-----------cccchhHHHHhHHH------HHhhccc
Q 004940 644 KKLAQSLQEAEDRLQDALATEAGA-----------LTSLGATMYASKFA------ANLLHPL 688 (722)
Q Consensus 644 r~~~~~~~~aeery~~~~~~~p~~-----------~~~vp~~~iASr~a------~~~~~~~ 688 (722)
+.......++++|+..++.+.++. ...+++++||+.+. +++++.+
T Consensus 147 ~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~lt~~~iA~~lG~sr~tvsR~l~~l 208 (235)
T PRK11161 147 MILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRF 208 (235)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCceeEccccHHHHHHHhCCcHHHHHHHHHHH
Confidence 455556678888888877664432 24678899998874 4455555
No 9
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.51 E-value=4.1e-13 Score=144.97 Aligned_cols=191 Identities=19% Similarity=0.296 Sum_probs=114.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhheeeEEecCccccCCCeeecCHHHHHHHHHhh-hhhhhhhhccChhHHHHhhhccCCCC
Q 004940 134 ITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMS-YFIVDILAILPLPQLVVLIIVPAVKG 212 (722)
Q Consensus 134 ~~~~~~~~~~d~~f~iDi~l~F~t~y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~ 212 (722)
..+.+++.++-++|.++++++|..+ |+ ..+++|+ -=+||++|++||++=+.......
T Consensus 240 p~l~~vE~vCi~WFT~E~llR~~~~---P~----------------k~~F~k~pLNIIDllAIlPFYielll~~~~~--- 297 (477)
T KOG3713|consen 240 PILTYVETVCIAWFTFEYLLRFLVA---PN----------------KLEFFKSPLNIIDLLAILPFYLELLLTLFGG--- 297 (477)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcC---ch----------------HHHHHhCcchHHHHHHHHHHHHHHHHHHhcc---
Confidence 4577899999999999999999654 33 4567777 56999999999976543322221
Q ss_pred CchhhhhhhHHHHHHhhhhhHHHHhhhhhhHhh--hhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccccchH
Q 004940 213 PVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVK--RTSGILTETAWAGAALNLFLYM-LASHIFGACWYLYSIERQDSCW 289 (722)
Q Consensus 213 ~~~~~~~~~lr~i~~~qyl~Rl~ri~~l~~~l~--~~~~~~~~~~~~~~~~~ll~~~-l~~H~~~c~wy~l~~~~~~~cw 289 (722)
.......++...+++++ +.|++|+++|.+.-. +..|.-.+ +-+.-+-.|++++ +.+-+++.+-|++-.+.
T Consensus 298 ~~~~~l~~~~~vvrvlR-~lRI~RI~KLaRhS~GLr~lg~Tlr-~S~~ElglLllfL~~GI~iFStlvY~~Ek~~----- 370 (477)
T KOG3713|consen 298 ESLKELENAGLVVRVLR-VLRILRIFKLARHSTGLRTLGLTLR-RSYRELGLLLLFLAVGIVIFSTLVYFAEKDE----- 370 (477)
T ss_pred chHHHHhhhhhhHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----
Confidence 11111122222222221 334444443333211 11111111 0111122333333 45667777777743110
Q ss_pred HHhhhhcCCCCCCccccccCCccCccccccccccCCCCCcccccCCccccchhHhhhhcccccCCChhHHHHHHHHHHHH
Q 004940 290 RDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLR 369 (722)
Q Consensus 290 ~~~c~~~~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~~f~~gi~~~a~~~~~~~~~~~~~~Y~~slyw~l~ 369 (722)
|+ +.| ..-=.|+|||+.
T Consensus 371 --------------------------------------~~-----~~F--------------------tSIPa~~WWaiV 387 (477)
T KOG3713|consen 371 --------------------------------------PD-----TKF--------------------TSIPAGFWWAVV 387 (477)
T ss_pred --------------------------------------CC-----CCC--------------------ccccchhheeeE
Confidence 00 111 111238999999
Q ss_pred HhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004940 370 NLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTT 416 (722)
Q Consensus 370 tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~ 416 (722)
|||||||||.+|.|...++++..+++.|+++.|+-|..|.+-+....
T Consensus 388 TMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y 434 (477)
T KOG3713|consen 388 TMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYY 434 (477)
T ss_pred EEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHH
Confidence 99999999999999999999999999999999998776665555443
No 10
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.50 E-value=3.6e-13 Score=137.88 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=115.4
Q ss_pred HHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCC
Q 004940 501 DAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPL 579 (722)
Q Consensus 501 ~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~ 579 (722)
..+.+..+.+.|++|++|+++||+++++|||.+|.|+++..+ +|++.+ +.++.+|++||+.+++ +. .+
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~~---~~------~~ 93 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIELI---DK------DH 93 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehhh---cC------CC
Confidence 357777889999999999999999999999999999997754 577755 7899999999998763 21 22
Q ss_pred cccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004940 580 STRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRLQD 659 (722)
Q Consensus 580 ~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r~~~~~~~~aeery~~ 659 (722)
++.+++|+++|+++.+++++|.+++.++|.+....++.+.+ ...+...+.......++++|+..
T Consensus 94 ~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~----------------~~~~~~~~~~~~~~~~~~~Rla~ 157 (226)
T PRK10402 94 ETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLSH----------------KNYRNIVSLTQNQSFPLENRLAA 157 (226)
T ss_pred CCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHH----------------HHHHHHHHHHHhccChHHHHHHH
Confidence 57799999999999999999999999999776654443332 11222333333444578888888
Q ss_pred HHhhc--ccccccchhHHHHhHHH
Q 004940 660 ALATE--AGALTSLGATMYASKFA 681 (722)
Q Consensus 660 ~~~~~--p~~~~~vp~~~iASr~a 681 (722)
++... ++. ...++..||+.+.
T Consensus 158 ~L~~~~~~~~-~~~t~~~lA~~lG 180 (226)
T PRK10402 158 FILLTQEGDL-YHEKHTQAAEYLG 180 (226)
T ss_pred HHHhcccCCc-ccchHHHHHHHHC
Confidence 76532 222 2357889998886
No 11
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.45 E-value=2e-12 Score=132.75 Aligned_cols=157 Identities=16% Similarity=0.129 Sum_probs=120.3
Q ss_pred HHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCc
Q 004940 502 AMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLS 580 (722)
Q Consensus 502 ~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~ 580 (722)
.++...+.+.|++|++|+.+||+++++|||++|.|+++..+ +|++.+ +.++.+|++||+.. .. ++
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~----~~--------~~ 98 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLES----GS--------TH 98 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccC----CC--------cC
Confidence 45667788999999999999999999999999999998754 577655 78899999999642 11 24
Q ss_pred ccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004940 581 TRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRLQDA 660 (722)
Q Consensus 581 ~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r~~~~~~~~aeery~~~ 660 (722)
..+++|+++|+++.++.++|++++.++|++....++.+.+ ......++.......++++|+..+
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~----------------~l~~~~~~~~~l~~~~~~~Rla~~ 162 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAG----------------GLRHAQDHMLLLGRKTAMERVAAF 162 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 6799999999999999999999999999887766555443 222334555666667888888777
Q ss_pred Hhhc-------ccccccchhHHHHhHHH------HHhhccc
Q 004940 661 LATE-------AGALTSLGATMYASKFA------ANLLHPL 688 (722)
Q Consensus 661 ~~~~-------p~~~~~vp~~~iASr~a------~~~~~~~ 688 (722)
+.+. +.+...+++++||+.+. +.+++.+
T Consensus 163 Ll~l~~~~g~~~~i~i~lt~~~IA~~lGisretlsR~L~~L 203 (230)
T PRK09391 163 LLEMDERLGGAGMMALPMSRRDIADYLGLTIETVSRALSQL 203 (230)
T ss_pred HHHHHHHhCCCCEEEecCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 6542 23345678899999884 4556555
No 12
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.41 E-value=1.2e-11 Score=124.25 Aligned_cols=167 Identities=20% Similarity=0.265 Sum_probs=126.6
Q ss_pred ccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeechhhh
Q 004940 487 MRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALL 565 (722)
Q Consensus 487 ~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l 565 (722)
...+.|..++.+....+......+.+++|+.|+++||+++.+|+|.+|.++++... +|++.+ +.++++||+||+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l 80 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELAL 80 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHH
Confidence 34566666778888888888999999999999999999999999999999998765 577755 789999999999998
Q ss_pred hhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 004940 566 TWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKK 645 (722)
Q Consensus 566 ~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r~ 645 (722)
+.. + ++..+++|+++|+++.+++++|.+++.+.|.+...++..+.+ ..++...+.
T Consensus 81 ~~~-~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~----------------~l~~~~~~~ 135 (214)
T COG0664 81 LGG-D--------PRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLAR----------------RLRQALERL 135 (214)
T ss_pred hcC-C--------CccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHH----------------HHHHHHHHH
Confidence 521 1 367799999999999999999999988888776655544433 333344444
Q ss_pred HHHHHHHHHHHHHHHHhhccc-----------ccccchhHHHHhHH
Q 004940 646 LAQSLQEAEDRLQDALATEAG-----------ALTSLGATMYASKF 680 (722)
Q Consensus 646 ~~~~~~~aeery~~~~~~~p~-----------~~~~vp~~~iASr~ 680 (722)
.....+++++|....+..-.. +...++.+.+|+-+
T Consensus 136 ~~~~~~~~~~r~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ia~~~ 181 (214)
T COG0664 136 SLLARKDVEERLARFLLNLGRRLGIATEDGILIPLPLTHKDLAEYL 181 (214)
T ss_pred HHHhhccHHHHHHHHHHHHhhccCCCCCCCcEEeccCCHHHHHHHh
Confidence 444566777777665444222 23567778887655
No 13
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.39 E-value=5.4e-12 Score=112.88 Aligned_cols=111 Identities=27% Similarity=0.488 Sum_probs=97.1
Q ss_pred cccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeechhhhhhhc
Q 004940 491 MFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWAL 569 (722)
Q Consensus 491 lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~~ 569 (722)
+|..++++.+..+++.++.+.+++|++|+.+|++++++|+|.+|.++++..+ +|++.. +..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHHh---
Confidence 4788999999999999999999999999999999999999999999997754 455544 7899999999999874
Q ss_pred CCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHH
Q 004940 570 DPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 612 (722)
Q Consensus 570 ~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~ 612 (722)
.. .++..+++|.++|+++.|+.++|.+++.++|++..
T Consensus 76 ~~------~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (115)
T cd00038 76 GN------GPRSATVRALTDSELLVLPRSDFRRLLQEYPELAR 112 (115)
T ss_pred cC------CCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHH
Confidence 11 12567999999999999999999999999997654
No 14
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.35 E-value=2.9e-12 Score=127.00 Aligned_cols=193 Identities=18% Similarity=0.273 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHhheeeEEecCccccCCCeeecCHHHHHHHHHhh-hhhhhhhhccChhHHHHhhhccCCCCCchh
Q 004940 138 VLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMS-YFIVDILAILPLPQLVVLIIVPAVKGPVPL 216 (722)
Q Consensus 138 ~~~~~~d~~f~iDi~l~F~t~y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~~ 216 (722)
+++.+++++|.+|+++++.+... . +++|+++ |.++|+++++|..........+ ..+..
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~-----------~-------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~ 59 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGF-----------K-------RRRYFRSWWNWFDFISVIPSIVSVILRSYG---SASAQ 59 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC-----------G--------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS-----HHC
T ss_pred CChHHHHHHHHHHHHHHHHHhcc-----------H-------HHHHhcChhhcccccccccccccccccccc---ccccc
Confidence 36889999999999999986532 1 6789998 7789999999996554322111 11000
Q ss_pred hhhhhHHHHHHhhhhhHHHHhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHhhhhc
Q 004940 217 VAKEMLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKL 296 (722)
Q Consensus 217 ~~~~~lr~i~~~qyl~Rl~ri~~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wy~l~~~~~~~cw~~~c~~~ 296 (722)
...+++++++ +.|++|+.+..+.+.+....+. .........++++++..|+.||+++.+.......|+..
T Consensus 60 ~~~~~~~~l~----~~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~----- 129 (200)
T PF00520_consen 60 SLLRIFRLLR----LLRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDP----- 129 (200)
T ss_dssp HCHHHHHHHH----HHHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----------
T ss_pred ceEEEEEeec----cccccccccccccccccccccc-cccccccccccccccccccccchhheeccccccccccc-----
Confidence 1223333332 3344444444444433333222 12223344455666789999999988874322221100
Q ss_pred CCCCCCccccccCCccCccccccccccCCCCCcccccCCccccchhHhhhhcccccCCChhHHHHHHHHHHHHHhcccCC
Q 004940 297 NDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQ 376 (722)
Q Consensus 297 ~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~~f~~gi~~~a~~~~~~~~~~~~~~Y~~slyw~l~tlstvG~ 376 (722)
.+.... + ....+.++.|..|+||+++++++.|+
T Consensus 130 --------------------~~~~~~-----~----------------------~~~~~~f~~~~~s~~~~~~~~t~~~~ 162 (200)
T PF00520_consen 130 --------------------TWDSEN-----D----------------------IYGYENFDSFGESLYWLFQTMTGEGW 162 (200)
T ss_dssp ---------------------SS-------------------------------SSTHHHHSSHHHHHHHHHHHHTTTTC
T ss_pred --------------------cccccc-----c----------------------cccccccccccccccccccccccCCc
Confidence 000000 0 01234567799999999999999999
Q ss_pred CCccCC-----chhHHHHH-HHHHHHHHHHHHHHHHHH
Q 004940 377 NLKTST-----FVGEVFFA-IFISISGLVLFALLIGNM 408 (722)
Q Consensus 377 gd~~~~-----~~~E~if~-i~~~i~G~~lfa~lig~~ 408 (722)
||..+. +..+.++. +++.+.+.++++++||.|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 163 GDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp CCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 999887 78899998 777777789999999986
No 15
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.34 E-value=2.8e-11 Score=121.43 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=107.6
Q ss_pred cceEEEeCCCcEEEcCCC--CcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCccc
Q 004940 506 HLKPVLYTEKSFIVREGD--PVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTR 582 (722)
Q Consensus 506 ~l~~~~~~kge~Ii~eGd--~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ 582 (722)
.++.+.|++|++|+++|| +++++|+|++|.|+++..+ +|++.+ +..+.+||+||+..++ ..+ ++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~~--~~~--------~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEALA--GAE--------RAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHhc--CCC--------CCc
Confidence 467889999999999999 7799999999999998754 678755 8999999999997542 122 466
Q ss_pred EEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004940 583 TVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRLQDALA 662 (722)
Q Consensus 583 ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r~~~~~~~~aeery~~~~~ 662 (722)
+++|+++|+++.|++++| +|++....++.+.+.... ..+.+.........+|....++.-++. +.....
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~----~~~~~~~l~~~~~~~Rla~~Ll~l~~~-~~~~~~ 141 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLAR----AYESIYRLVGQRLKNRIAAALLELSDT-PLATQE 141 (202)
T ss_pred eEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHH----HHHHHHHHHhCchHHHHHHHHHHHHHH-hCCCCC
Confidence 899999999999999987 465555555554432222 222222223333444444444433331 211122
Q ss_pred hcccccccchhHHHHhHHH------HHhhccc
Q 004940 663 TEAGALTSLGATMYASKFA------ANLLHPL 688 (722)
Q Consensus 663 ~~p~~~~~vp~~~iASr~a------~~~~~~~ 688 (722)
..|.+...+++.+||+.+. +.+++.+
T Consensus 142 ~~~~~~~~~t~~~iA~~lG~tretvsR~l~~l 173 (202)
T PRK13918 142 DSGETMIYATHDELAAAVGSVRETVTKVIGEL 173 (202)
T ss_pred CCCeEEecCCHHHHHHHhCccHHHHHHHHHHH
Confidence 3455667889999998874 4455555
No 16
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.31 E-value=2.1e-11 Score=105.17 Aligned_cols=89 Identities=26% Similarity=0.405 Sum_probs=78.0
Q ss_pred EEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecC-CeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc
Q 004940 510 VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYG-GRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALT 588 (722)
Q Consensus 510 ~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~-g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale 588 (722)
+.|++|++|+++|++++++|||++|.++++..+. ++..+ +..+.+|++||+..++... ++..+++|.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~~~~---------~~~~~~~a~~ 70 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQI--IFFLGPGDIFGEIELLTGK---------PSPFTVIALT 70 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEE--EEEEETTEEESGHHHHHTS---------BBSSEEEESS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeee--ecceeeeccccceeecCCC---------ccEEEEEEcc
Confidence 6899999999999999999999999999987764 44433 7899999999999886321 3678999999
Q ss_pred cceEEEecHHHHHHHHHHhHH
Q 004940 589 EVEAFSLMADDLKSVASQFRR 609 (722)
Q Consensus 589 ~~ell~L~~~df~~L~~~~P~ 609 (722)
+|+++.|++++|.++++++|+
T Consensus 71 ~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 71 DSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SEEEEEEEHHHHHHHHHHSHH
T ss_pred CEEEEEEeHHHHHHHHHhCcC
Confidence 999999999999999999994
No 17
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.31 E-value=4.8e-11 Score=107.22 Aligned_cols=115 Identities=23% Similarity=0.356 Sum_probs=98.0
Q ss_pred cccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeechhhhhhhc
Q 004940 491 MFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWAL 569 (722)
Q Consensus 491 lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~~ 569 (722)
+|.+++++.++.++..++.+.+++|++|+++|++++++|||.+|.++++..+ +|++.. +..+.+|++||+..++. .
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~~-~ 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQI--LGILGPGDFFGELALLT-N 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEE--EEeecCCceechhhhcc-C
Confidence 4788999999999999999999999999999999999999999999998764 455544 78999999999998741 1
Q ss_pred CCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHH
Q 004940 570 DPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQ 614 (722)
Q Consensus 570 ~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~ 614 (722)
.+ .++..+++|.++|+++.++.+++...+.++|.+..+.
T Consensus 78 ~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 116 (120)
T smart00100 78 SR------RAASATAVALELATLLRIDFRDFLQLLQENPQLLLEL 116 (120)
T ss_pred CC------cccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHH
Confidence 11 2357789999999999999999999999999765443
No 18
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.29 E-value=5.4e-11 Score=118.32 Aligned_cols=142 Identities=18% Similarity=0.142 Sum_probs=102.1
Q ss_pred CcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEE
Q 004940 515 KSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAF 593 (722)
Q Consensus 515 ge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell 593 (722)
|+.|+++||+++++|+|.+|.|+++..+ +|++.+ +.++.+|++||+.+++ ...+ .++..+++|+++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~~---~~~~----~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSLI---TGHR----SDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeeec---cCCC----CccceEEEEecceEEE
Confidence 7899999999999999999999998754 577754 8999999999998764 2111 1134679999999999
Q ss_pred EecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----c----c
Q 004940 594 SLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRLQDALAT----E----A 665 (722)
Q Consensus 594 ~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r~~~~~~~~aeery~~~~~~----~----p 665 (722)
.+++++|++++.++|++....++.+.+ ......++.......++++|+..++.. + +
T Consensus 72 ~i~~~~~~~l~~~~p~l~~~~~~~l~~----------------~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~ 135 (193)
T TIGR03697 72 AVPIEQVEKAIEEDPDLSMLLLQGLSS----------------RILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPGQ 135 (193)
T ss_pred EeeHHHHHHHHHHChHHHHHHHHHHHH----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999887766655432 122233333344455566665554321 1 1
Q ss_pred ---cccccchhHHHHhHHH
Q 004940 666 ---GALTSLGATMYASKFA 681 (722)
Q Consensus 666 ---~~~~~vp~~~iASr~a 681 (722)
.+...+.+..||+.+.
T Consensus 136 ~~~~~~~~~t~~~iA~~lG 154 (193)
T TIGR03697 136 RGVTIDLRLSHQAIAEAIG 154 (193)
T ss_pred CeEEecCCCCHHHHHHHhC
Confidence 2335678888888764
No 19
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.17 E-value=2.7e-10 Score=123.42 Aligned_cols=90 Identities=22% Similarity=0.299 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 004940 356 FPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSH 435 (722)
Q Consensus 356 ~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~ 435 (722)
-+.-|-.++||++.|+||+||||++|.+...++++..+.++|+.+||.--|.+++=+.-. -+++.|+ ++|-++
T Consensus 266 ~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALK--VQeq~RQ-----KHf~rr 338 (654)
T KOG1419|consen 266 EFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALK--VQEQHRQ-----KHFNRR 338 (654)
T ss_pred cchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhh--hHHHHHH-----HHHHhh
Confidence 446677899999999999999999999999999999999999999999887777665432 2233333 367788
Q ss_pred CCCCHHHHHHHHHHHHH
Q 004940 436 RMLPENLRDRIRRYEQY 452 (722)
Q Consensus 436 ~~lp~~L~~rV~~y~~~ 452 (722)
++.-.+|.+-..+||.-
T Consensus 339 r~pAA~LIQc~WR~yaa 355 (654)
T KOG1419|consen 339 RNPAASLIQCAWRYYAA 355 (654)
T ss_pred cchHHHHHHHHHHHHhc
Confidence 88888999999998763
No 20
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.16 E-value=7.8e-10 Score=121.08 Aligned_cols=116 Identities=19% Similarity=0.271 Sum_probs=102.5
Q ss_pred HHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeech
Q 004940 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 562 (722)
Q Consensus 483 ~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe 562 (722)
.+++.+.|.|+.++++++++|...+...+|.|||.|+..|.+.+++|+|.+|.|+++..++ + + +..+.+||.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g-~--v--~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGG-E--V--LDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCC-e--e--eeeeccCccccc
Confidence 5788999999999999999999999999999999999999999999999999999876544 3 2 799999999999
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHH
Q 004940 563 ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 612 (722)
Q Consensus 563 ~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~ 612 (722)
.+++....+ .....|.+|+.++.|+++.|.+++.++|+++.
T Consensus 81 ~~l~~~~~~---------~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ 121 (610)
T COG2905 81 SSLFTELNK---------QRYMAAEEDSLCYLLPKSVFMQLMEENPEFAD 121 (610)
T ss_pred hhhcccCCC---------cceeEeeccceEEecCHHHHHHHHHhCcHHHH
Confidence 988633322 33678888999999999999999999998765
No 21
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.16 E-value=5.5e-11 Score=128.06 Aligned_cols=129 Identities=23% Similarity=0.405 Sum_probs=110.1
Q ss_pred HHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCe
Q 004940 480 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDF 559 (722)
Q Consensus 480 ~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~ 559 (722)
..+.++|+.+|+|.+++++.+..+++.++...|..|++|++||+.++.+|+|.+|.|++...+.+.++...+..+..||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 34578999999999999999999999999999999999999999999999999999999877655333334899999999
Q ss_pred echhhhhhhcCCCCCCCCCCcccEEEEccc-ceEEEecHHHHHHHHHHhHHHHHHHHHH
Q 004940 560 CGEALLTWALDPQSSSNRPLSTRTVQALTE-VEAFSLMADDLKSVASQFRRLHSKQLQH 617 (722)
Q Consensus 560 fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~-~ell~L~~~df~~L~~~~P~l~~~~l~~ 617 (722)
|||-+++ . ...|++++.|.++ ++++.|+++.|..++....++..+....
T Consensus 348 FGE~al~--~-------edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D 397 (732)
T KOG0614|consen 348 FGERALL--G-------EDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGD 397 (732)
T ss_pred hhHHHhh--c-------cCccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccc
Confidence 9999985 1 2247889999987 9999999999999999877766544443
No 22
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.10 E-value=6.5e-10 Score=124.05 Aligned_cols=113 Identities=19% Similarity=0.374 Sum_probs=97.4
Q ss_pred HHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeech
Q 004940 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 562 (722)
Q Consensus 483 ~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe 562 (722)
.+.++++++|+++++++++.++..++.+.|++|++|+++||.++.+|+|++|.|+++..+++.+. ++..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~--~l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESR--PEFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcE--EEEEeCCCCEeeh
Confidence 45678999999999999999999999999999999999999999999999999999876543343 3788999999997
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhH
Q 004940 563 ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFR 608 (722)
Q Consensus 563 ~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P 608 (722)
. + . . .++..+++|.++|+++.|++++|..+....+
T Consensus 85 ~-l---~-~------~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G-L---S-G------SVHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h-h---C-C------CCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 4 2 1 1 1257799999999999999999999887654
No 23
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.07 E-value=2.5e-10 Score=123.10 Aligned_cols=129 Identities=22% Similarity=0.376 Sum_probs=109.3
Q ss_pred HHHHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecC
Q 004940 477 IKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKA 556 (722)
Q Consensus 477 I~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~ 556 (722)
=...+..+.+++..+.++++.+++.+++.+|.++.|.+|++|++|||+++++|++.+|.+.+.. +|+- ++..++
T Consensus 147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~l----l~~m~~ 220 (732)
T KOG0614|consen 147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGKL----LGKMGA 220 (732)
T ss_pred cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCee----eeccCC
Confidence 3445567778888888999999999999999999999999999999999999999999999875 3432 789999
Q ss_pred CCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 004940 557 GDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFR 620 (722)
Q Consensus 557 Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r 620 (722)
|..|||.++++.+. |+++|+|+++|.+|+|+++-|+.++...-.-+.....++.|
T Consensus 221 gtvFGELAILynct---------RtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLr 275 (732)
T KOG0614|consen 221 GTVFGELAILYNCT---------RTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLR 275 (732)
T ss_pred chhhhHHHHHhCCc---------chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999976543 78999999999999999999999998766544444444443
No 24
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.06 E-value=1.1e-10 Score=120.27 Aligned_cols=48 Identities=21% Similarity=0.495 Sum_probs=43.2
Q ss_pred HHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004940 363 CFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQK 410 (722)
Q Consensus 363 slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~ 410 (722)
+|||++.|||||||||..|.+.+.++...+++|.|++--|+-+-.+.+
T Consensus 397 aFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVs 444 (507)
T KOG1545|consen 397 AFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVS 444 (507)
T ss_pred cceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEe
Confidence 799999999999999999999999999999999999988886654433
No 25
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.05 E-value=5.7e-10 Score=115.81 Aligned_cols=121 Identities=16% Similarity=0.221 Sum_probs=103.9
Q ss_pred HHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeech
Q 004940 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 562 (722)
Q Consensus 483 ~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe 562 (722)
.+.+++.-+|.+++++.+..+.+.+..+.++.|+.|++||+.++.+|+|.+|.+.++.. |+- +..+.+|..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~~~----v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--GTY----VTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--CeE----EeeeCCCCchhh
Confidence 56778889999999999999999999999999999999999999999999999999875 222 688999999999
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHH
Q 004940 563 ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 618 (722)
Q Consensus 563 ~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~ 618 (722)
.++.+ .++|.+|+.|.+++.+|.|++..|..++-.+.....+.+...
T Consensus 195 lALmy---------n~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~ 241 (368)
T KOG1113|consen 195 LALMY---------NPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPF 241 (368)
T ss_pred hHhhh---------CCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhh
Confidence 99863 345889999999999999999999988766554444444433
No 26
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.87 E-value=1.7e-08 Score=85.44 Aligned_cols=55 Identities=18% Similarity=0.396 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004940 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLE 413 (722)
Q Consensus 359 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~ 413 (722)
.|..++||++.++||+||||+.|.+..+++++++.+++|+.++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567999999999999999999999999999999999999999999999998875
No 27
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.68 E-value=5.1e-08 Score=101.48 Aligned_cols=118 Identities=21% Similarity=0.287 Sum_probs=103.6
Q ss_pred HHHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCC
Q 004940 478 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAG 557 (722)
Q Consensus 478 ~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~G 557 (722)
++.|+.++|+.+|++..+...+...+++.+.++.|++|+.|+.+|+.++.+|+|.+|.|.+....+|. .+ .++.|
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v----~v-kl~~~ 308 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGV----EV-KLKKG 308 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCCe----EE-Eechh
Confidence 35678999999999999999999999999999999999999999999999999999999986655542 24 99999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHH
Q 004940 558 DFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRR 609 (722)
Q Consensus 558 d~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~ 609 (722)
|+|||.+++. ..++.+++.|.++..+..++++.|+.|+.-.-+
T Consensus 309 dyfge~al~~---------~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~d 351 (368)
T KOG1113|consen 309 DYFGELALLK---------NLPRAATVVAKGRLKCAKLDKPRFERLLGPCQD 351 (368)
T ss_pred hhcchHHHHh---------hchhhceeeccCCceeeeeChHHHHHHhhHHHH
Confidence 9999998852 223788999999999999999999999987443
No 28
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.61 E-value=6.7e-09 Score=107.95 Aligned_cols=184 Identities=17% Similarity=0.293 Sum_probs=111.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhheeeEEecCccccCCCeeecCHHHHHHHHHhh-hhhhhhhhccChhHHHHhhhccC
Q 004940 131 TLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMS-YFIVDILAILPLPQLVVLIIVPA 209 (722)
Q Consensus 131 ~~~~~~~~~~~~~d~~f~iDi~l~F~t~y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~ 209 (722)
.+...++.++..+-++|..+.++++..| |+ .-|++++ .-++|+++++|+++-+ ....+
T Consensus 224 ry~~aFFclDTACVmIFT~EYlLRL~aA---Ps----------------R~rF~RSvMSiIDVvAIlPYYigL--v~t~N 282 (632)
T KOG4390|consen 224 RYPVAFFCLDTACVMIFTGEYLLRLFAA---PS----------------RYRFLRSVMSIIDVVAILPYYIGL--VMTDN 282 (632)
T ss_pred ccceeeEEecceeEEEeeHHHHHHHHcC---ch----------------HHHHHHHHHHHHHHhhhhhhheEE--EecCC
Confidence 3455667778888888888888888654 33 4578888 6799999999996432 22233
Q ss_pred CCCCchhhhhhhHHHHHHhhhhhHHHHhhhhhhHh--hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 004940 210 VKGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDV--KRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDS 287 (722)
Q Consensus 210 ~~~~~~~~~~~~lr~i~~~qyl~Rl~ri~~l~~~l--~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wy~l~~~~~~~ 287 (722)
.+.+..+.+++++| ++||+++.+.- -+..|+-.++-..-.-+.++....++-++|.+.|+--
T Consensus 283 ~DVSGaFVTLRVFR----------VFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAE------ 346 (632)
T KOG4390|consen 283 EDVSGAFVTLRVFR----------VFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAE------ 346 (632)
T ss_pred ccccceeEEEEeee----------eeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh------
Confidence 34444444444433 33333322211 1222322221111112333333345666777666521
Q ss_pred hHHHhhhhcCCCCCCccccccCCccCccccccccccCCCCCcccccCCccccchhHhhhhcccccCCChhHHHHHHHHHH
Q 004940 288 CWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWG 367 (722)
Q Consensus 288 cw~~~c~~~~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~~f~~gi~~~a~~~~~~~~~~~~~~Y~~slyw~ 367 (722)
.+. +.+.+..--.+||+.
T Consensus 347 ------------Kg~--------------------------------------------------~at~FTsIPaaFWYT 364 (632)
T KOG4390|consen 347 ------------KGS--------------------------------------------------SATKFTSIPAAFWYT 364 (632)
T ss_pred ------------ccc--------------------------------------------------cccccccCcHhHhhh
Confidence 000 001111122489999
Q ss_pred HHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 004940 368 LRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFAL----LIGNMQKYLE 413 (722)
Q Consensus 368 l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~----lig~~~~~l~ 413 (722)
+.||||+||||..|.+...++|..++.+.|+++.|+ ++.|.+.+..
T Consensus 365 IVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYH 414 (632)
T KOG4390|consen 365 IVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYH 414 (632)
T ss_pred eeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHh
Confidence 999999999999999999999999999999999887 4456665553
No 29
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.47 E-value=1.6e-07 Score=102.03 Aligned_cols=137 Identities=17% Similarity=0.284 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC
Q 004940 357 PKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHR 436 (722)
Q Consensus 357 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 436 (722)
.-.|..|.|+-+.||+||||||+...+...++|.+|..+.|+.+||--+-.+..++.+..+---|++..-.. +|-
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehgk-----khi 360 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHGK-----KHI 360 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcCC-----eeE
Confidence 356889999999999999999999999999999999999999999999999999988765444443321000 010
Q ss_pred CCC-HHHHHHHHHHHHHHHHhhc-CCC-HHHHHhhCChhHHHHHHHHHhHHHhccCccccC--CCHHHHH
Q 004940 437 MLP-ENLRDRIRRYEQYKWQETR-GVE-EEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEK--MDDQLLD 501 (722)
Q Consensus 437 ~lp-~~L~~rV~~y~~~~w~~~~-~~~-e~~ll~~Lp~~Lr~~I~~~l~~~~l~~v~lF~~--ls~~~l~ 501 (722)
-+= .-.-+.|-.|++-.-.+.| .++ |--+|+..||+|.-+ -+++.-..++.+|++ +++-.+.
T Consensus 361 vvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl~ 427 (1103)
T KOG1420|consen 361 VVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDLA 427 (1103)
T ss_pred EEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhhh
Confidence 011 1123344444443333333 334 346678888888543 234444566777764 4554443
No 30
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=97.95 E-value=5.1e-06 Score=69.05 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=33.1
Q ss_pred CceeCCCChhHHHHHHHHHHHHHHHHHhhhhcccc
Q 004940 82 KRILDPQGPFLQWWNKIFVLSCVIALSIDPLFFYM 116 (722)
Q Consensus 82 ~~ii~P~s~~~~~W~~~~~i~~~~~~~~~Pl~~~~ 116 (722)
.+||||.|.|+..||.+++++++++++++|+.++|
T Consensus 36 ~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF 70 (77)
T PF08412_consen 36 PWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISF 70 (77)
T ss_pred CeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheE
Confidence 78999999999999999999999999999999654
No 31
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.89 E-value=2.2e-05 Score=90.22 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=94.3
Q ss_pred HHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEe-cCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCC
Q 004940 499 LLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNR 577 (722)
Q Consensus 499 ~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~ 577 (722)
.+..+-..+.-..+.+|+.++++||..+.+|+|+.|.+|.... .+|+..+ +..++.||.+|+...+. .
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~lt---~------ 568 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEMLT---K------ 568 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHHhh---c------
Confidence 4455555677889999999999999999999999999998665 3454434 78999999999998752 1
Q ss_pred CCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 004940 578 PLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFH 622 (722)
Q Consensus 578 ~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~y 622 (722)
.+|..|+.|+-++++..||..-|..+..+||.+..++.+.+++.+
T Consensus 569 ~~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 569 QPRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred CCccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 236679999999999999999999999999998887777777666
No 32
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.85 E-value=0.00021 Score=78.96 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004940 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYL 412 (722)
Q Consensus 359 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l 412 (722)
.+..|+||++.|+||+||||+.|.+...++|+++++++|+.+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999998877654
No 33
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.81 E-value=0.0014 Score=71.13 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 004940 356 FPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSH 435 (722)
Q Consensus 356 ~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~ 435 (722)
....|.-++|....|+.++||||+.|.|...+..+++..++|.++.|.+++.++--+.-. .--+-+++||-.
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLeLt--------~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLELT--------KAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 446688899999999999999999999999999999999999999999998887655432 222356777877
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 004940 436 RMLPENLRDRIRRYEQYKWQ 455 (722)
Q Consensus 436 ~~lp~~L~~rV~~y~~~~w~ 455 (722)
.++-+++++-..+=++..|.
T Consensus 356 tqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777775
No 34
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.60 E-value=0.00028 Score=76.01 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhcccCCCC--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004940 358 KKFFYCFWWGLRNLSSLGQNL--KTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLEST 415 (722)
Q Consensus 358 ~~Y~~slyw~l~tlstvG~gd--~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~ 415 (722)
..+..+|++++.|++|+|||. ++|....-.++.++=+++|+++.|+++|.+-.=++.-
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 456789999999999999998 5677788888888999999999999999877666543
No 35
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.39 E-value=0.00094 Score=77.28 Aligned_cols=108 Identities=12% Similarity=0.151 Sum_probs=86.7
Q ss_pred HHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcc
Q 004940 503 MCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLST 581 (722)
Q Consensus 503 l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~ 581 (722)
++..++...+..|++|++.|++.+.+|.+.+|.+.+...+ +|++.. +....+|+.|.....+. +-.+......++
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~l--lk~V~~G~~~tSllSiL--d~l~~~ps~~~~ 186 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYL--LKTVPPGGSFTSLLSIL--DSLPGFPSLSRT 186 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceee--EeeccCCCchHhHHHHH--HhccCCCcccce
Confidence 3377788899999999999999999999999999987765 577766 88999998887766543 222222224578
Q ss_pred cEEEEcccceEEEecHHHHHHHHHHhHHHHHHH
Q 004940 582 RTVQALTEVEAFSLMADDLKSVASQFRRLHSKQ 614 (722)
Q Consensus 582 ~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~ 614 (722)
..++|.++|.+..++...|.++...||+-..+.
T Consensus 187 i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iri 219 (1158)
T KOG2968|consen 187 IAAKAATDCTVARIPYTSFRESFHKNPESSIRI 219 (1158)
T ss_pred eeeeeecCceEEEeccchhhhhhccChHHHHHH
Confidence 889999999999999999999999999654433
No 36
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.35 E-value=0.0095 Score=55.82 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHhc-ceEEEeCCCcEEEcCCC-CcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCC
Q 004940 494 KMDDQLLDAMCDH-LKPVLYTEKSFIVREGD-PVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDP 571 (722)
Q Consensus 494 ~ls~~~l~~l~~~-l~~~~~~kge~Ii~eGd-~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~ 571 (722)
+++......|+.+ .+...+++|+.-..||. +.+.+-++++|.+++... |+- +..+.|.+|...-.+.. ..+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~f----LH~I~p~qFlDSPEW~s-~~~ 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GRF----LHYIYPYQFLDSPEWES-LRP 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CEe----eEeecccccccChhhhc-ccc
Confidence 4688888999887 77789999999988885 567999999999998653 432 78888888888776532 111
Q ss_pred CCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHH
Q 004940 572 QSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRL 610 (722)
Q Consensus 572 ~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l 610 (722)
. ....-..|+.|.++|..+..+++.+..++...|-+
T Consensus 87 s---~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L 122 (153)
T PF04831_consen 87 S---EDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFL 122 (153)
T ss_pred C---CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHH
Confidence 1 12234679999999999999999999999999944
No 37
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.00071 Score=75.44 Aligned_cols=60 Identities=17% Similarity=0.401 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004940 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRL 419 (722)
Q Consensus 360 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~ 419 (722)
+..++|++.+++||+|||+++|.+...++++|+..++|+-++..+++++++.+...-...
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~ 175 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKL 175 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999999999999999999998654443
No 38
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.01 E-value=0.046 Score=54.56 Aligned_cols=96 Identities=9% Similarity=-0.017 Sum_probs=72.0
Q ss_pred HHHHHHhcceEEEeCCCcEE-EcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCC
Q 004940 499 LLDAMCDHLKPVLYTEKSFI-VREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNR 577 (722)
Q Consensus 499 ~l~~l~~~l~~~~~~kge~I-i~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~ 577 (722)
..+.+....++..+++|..+ .-+....+.++++.+|.+.+. ..++- .+....+..+||-...+ .+.
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~d~l----l~~t~~aP~IlGl~~~~---~~~----- 80 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-REENV----LIGITQAPYIMGLADGL---MKN----- 80 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ecCCe----EEEeccCCeEeeccccc---CCC-----
Confidence 44566667788899999997 444444468999999999994 33432 26788888999976542 221
Q ss_pred CCcccEEEEcccceEEEecHHHHHHHHHHhH
Q 004940 578 PLSTRTVQALTEVEAFSLMADDLKSVASQFR 608 (722)
Q Consensus 578 ~~~~~ti~Ale~~ell~L~~~df~~L~~~~P 608 (722)
...+.++|.++|+++.++.+++.++++++.
T Consensus 81 -~~~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 81 -DIPYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred -CceEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 124689999999999999999999999854
No 39
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.75 E-value=0.051 Score=63.76 Aligned_cols=86 Identities=19% Similarity=0.315 Sum_probs=52.9
Q ss_pred CceeCCCChhHHH---------HHHHHHHHHHHHHHhhhhccccccccCCccccccCCcchhhHHHHHHHHHHHHHHHHH
Q 004940 82 KRILDPQGPFLQW---------WNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRII 152 (722)
Q Consensus 82 ~~ii~P~s~~~~~---------W~~~~~i~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~ 152 (722)
++++.|+++|+.. .|.++++.++++++.+-+. -|.++... .--+.+++-++++-.+|++++.
T Consensus 1104 ~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtiale--rp~i~~~s-------~EriFltlsnyIFtaIfV~Em~ 1174 (1956)
T KOG2302|consen 1104 KYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALE--RPAIVEGS-------TERIFLTLSNYIFTAIFVVEMT 1174 (1956)
T ss_pred HHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhc--ccccccCc-------ceEEEEEecchHHHHHHHHHHH
Confidence 7799999999754 4555566666666666555 22222111 1112333446888899999998
Q ss_pred Hhhe-eeEEecCccccCCCeeecCHHHHHHHHHhh-hhhhhhh
Q 004940 153 FQFR-TGFIARSSRVFGRGELVDDPKAIAKRYLMS-YFIVDIL 193 (722)
Q Consensus 153 l~F~-t~y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDll 193 (722)
++-. .|.+- || .-|+++ |=.+|.+
T Consensus 1175 lKVVALGl~f--------ge---------~aYl~ssWN~LDgf 1200 (1956)
T KOG2302|consen 1175 LKVVALGLYF--------GE---------QAYLRSSWNVLDGF 1200 (1956)
T ss_pred HHHHhhhhcc--------ch---------HHHHHHHHHhhhHH
Confidence 8855 45333 33 368887 8777754
No 40
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.72 E-value=0.014 Score=65.56 Aligned_cols=114 Identities=13% Similarity=0.246 Sum_probs=87.0
Q ss_pred HhHHHhccCccccCCCHHHHHHHHhcceEEEe-CCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCe
Q 004940 481 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLY-TEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDF 559 (722)
Q Consensus 481 l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~-~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~ 559 (722)
..++++.+.|.|.+|+-....++|..|..... ..|.+|+..|+.-+..++|+.|+|++...+|..+ .++-|+-
T Consensus 278 qLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~e------~l~mGnS 351 (1283)
T KOG3542|consen 278 QLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKRE------ELKMGNS 351 (1283)
T ss_pred HHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCceE------Eeecccc
Confidence 34678888999999999999999988776544 5899999999999999999999999998887653 5777899
Q ss_pred echhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhH
Q 004940 560 CGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFR 608 (722)
Q Consensus 560 fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P 608 (722)
||...- .+.+.. -..--.-+.||+..+|...|+-.++.+..
T Consensus 352 FG~~PT---~dkqym-----~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 352 FGAEPT---PDKQYM-----IGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred cCCCCC---cchhhh-----hhhhheecccceEEEeehhhHHHHHHHHH
Confidence 986532 111100 00111356899999999999999987644
No 41
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=95.36 E-value=0.021 Score=62.83 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHH
Q 004940 361 FYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVL 400 (722)
Q Consensus 361 ~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~l 400 (722)
+.|+|+.+.|++||||||..|....-.++.++++-+.+++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ 258 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGL 258 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhc
Confidence 4588999999999999999999877666655444444433
No 42
>PLN03223 Polycystin cation channel protein; Provisional
Probab=95.04 E-value=5.8 Score=49.41 Aligned_cols=66 Identities=6% Similarity=-0.127 Sum_probs=36.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhhhccccccccCCccccccCCcchhhHHHHHHHHHHHHHHHHHHhh
Q 004940 86 DPQGPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQF 155 (722)
Q Consensus 86 ~P~s~~~~~W~~~~~i~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~F 155 (722)
.+.+.+...-+.++++.++|.++-.-..+.-........+-+ ....|.+++++.-++-+.=|++-|
T Consensus 1169 tt~DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laY----FKSfWNwLEIl~IlLS~AAIvLYF 1234 (1634)
T PLN03223 1169 TYEDWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAY----FLSGWNYVDFASIGLHLATIMMWF 1234 (1634)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhH----hccchHHHHHHHHHHHHHHHHHHH
Confidence 445667777778777777777666544432100000000111 234677777777777676666654
No 43
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=94.21 E-value=0.23 Score=53.29 Aligned_cols=60 Identities=18% Similarity=0.422 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcccCCCCccCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004940 360 FFYCFWWGLRNLSSLGQNLKTST--FVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRL 419 (722)
Q Consensus 360 Y~~slyw~l~tlstvG~gd~~~~--~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~ 419 (722)
+..+|-|++-|=+|+|||--..+ -..-++..++=+|+|+++-|+++|.|-.=+..-.+|.
T Consensus 113 f~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKRA 174 (400)
T KOG3827|consen 113 FTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKRA 174 (400)
T ss_pred hhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 45578889999999999975433 3555666667789999999999998776665444443
No 44
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=94.14 E-value=0.008 Score=62.67 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHH
Q 004940 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLI 405 (722)
Q Consensus 359 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~li 405 (722)
++.-|||++.+.+||+|||-.+|.|.+.++|.|+..++|+-+.-+.+
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmF 126 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMF 126 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHH
Confidence 55679999999999999999999999999999999999987665544
No 45
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=93.74 E-value=0.26 Score=51.71 Aligned_cols=57 Identities=14% Similarity=0.283 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcccCCCCccCCch-------hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004940 360 FFYCFWWGLRNLSSLGQNLKTSTFV-------GEV-FFAIFISISGLVLFALLIGNMQKYLESTT 416 (722)
Q Consensus 360 Y~~slyw~l~tlstvG~gd~~~~~~-------~E~-if~i~~~i~G~~lfa~lig~~~~~l~~~~ 416 (722)
|+.|+|+...|+||+|+||.++.-. .++ .++.+.+++|+.+++-+++.+.--+..++
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~ 251 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMN 251 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5668899999999999999876532 333 46666777888888777766655554443
No 46
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=90.22 E-value=0.071 Score=59.33 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhcccCCCCccCCchhHH--------HHHHHHHHHHHHHHHHHH
Q 004940 358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEV--------FFAIFISISGLVLFALLI 405 (722)
Q Consensus 358 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~--------if~i~~~i~G~~lfa~li 405 (722)
--|+.|+|+++.++||+|+||+.|.+.... .+..+..++|...++.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 346779999999999999999999998755 577788888888888877
No 47
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.27 E-value=5.7 Score=51.28 Aligned_cols=47 Identities=6% Similarity=0.222 Sum_probs=35.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhheeeEEecCccccCCCeeecCHHHHHHHHHhh-hhhhhhhhccCh
Q 004940 132 LEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMS-YFIVDILAILPL 198 (722)
Q Consensus 132 ~~~~~~~~~~~~d~~f~iDi~l~F~t~y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~ 198 (722)
....+...+.++-.+|.+.+++.... .|... |.+. |.++|++-+.-.
T Consensus 870 ~~~~L~y~D~~Ft~iFt~Em~lK~ia-----------~Gf~~---------y~rn~w~~lDf~Vv~vs 917 (1592)
T KOG2301|consen 870 INGILEYADYIFTYIFTFEMLLKWIA-----------YGFFF---------YFRNAWNWLDFVVVIVS 917 (1592)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHH---------HHhhHHhhhhHHHhhhH
Confidence 45567788999999999999999542 24322 9988 999999876554
No 48
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=86.71 E-value=0.87 Score=51.86 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=77.2
Q ss_pred ChhHHHHHHHHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEe
Q 004940 470 PKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFF 549 (722)
Q Consensus 470 p~~Lr~~I~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~ 549 (722)
|+.|+......-....|.....|.++-..-+.++|.......++...++++.|+++...|++++|.|-+..
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g--------- 93 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG--------- 93 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec---------
Confidence 34444333333334466777888899899999999999999999999999999999999999999986521
Q ss_pred eeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecH
Q 004940 550 NAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMA 597 (722)
Q Consensus 550 ~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~ 597 (722)
..+-|-..||.-. ...|+.++-.++++|..+++.
T Consensus 94 --qi~mp~~~fgkr~------------g~~r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 94 --QIYMPYGCFGKRT------------GQNRTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred --ceecCcccccccc------------ccccccceeeecccceeeeec
Confidence 1233444566442 112678888999999998854
No 49
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.31 E-value=60 Score=38.75 Aligned_cols=75 Identities=21% Similarity=0.353 Sum_probs=55.2
Q ss_pred cccCCCCccCCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhCCCCHHHHH
Q 004940 372 SSLGQNLKTSTF------VGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRL-EEMRVKRQDAEQWMSHRMLPENLRD 444 (722)
Q Consensus 372 stvG~gd~~~~~------~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~-~e~~~k~~~~~~~m~~~~lp~~L~~ 444 (722)
.|+|+||..... ..-.+|.+++.+.-+.++-.+|+.|++-........ ++++...-. .--|-.+.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~-~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAA-TILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHH-HHHHHHhcCCHHHHH
Confidence 578999875443 345677788888888889999999998887776555 677665443 345677999999988
Q ss_pred HHH
Q 004940 445 RIR 447 (722)
Q Consensus 445 rV~ 447 (722)
+-+
T Consensus 680 ~~~ 682 (782)
T KOG3676|consen 680 RFR 682 (782)
T ss_pred HHh
Confidence 833
No 50
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.09 E-value=12 Score=44.52 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHhHH
Q 004940 436 RMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 484 (722)
Q Consensus 436 ~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~ 484 (722)
+++|++||..|.+|+.+.-.+ .-.+++.+++.+-..|+..+...
T Consensus 402 ~~LP~~LR~dI~~hL~~~lv~-----~vpLF~~md~~~L~al~~rlk~~ 445 (727)
T KOG0498|consen 402 QSLPKDLRRDIKRHLCLDLVR-----KVPLFAGMDDGLLDALCSRLKPE 445 (727)
T ss_pred HhCCHHHHHHHHHHHhHHHHh-----hCchhhcCCHHHHHHHHHHhhhh
Confidence 479999999999999876543 34567777777777777666433
No 51
>COG4709 Predicted membrane protein [Function unknown]
Probab=73.16 E-value=17 Score=35.65 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--hcCCCHHHHHhhC--ChhHHHHHHHHHhHHHhccCccccCCCHH
Q 004940 426 RQDAEQWMSHRMLPENLRDRIRRYEQYKWQE--TRGVEEEGLLRNL--PKDLRRDIKRHLCWDLLMRVPMFEKMDDQ 498 (722)
Q Consensus 426 ~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~--~~~~~e~~ll~~L--p~~Lr~~I~~~l~~~~l~~v~lF~~ls~~ 498 (722)
++++++|++ .+|++.+..+..||+-.+.+ ..|.+|+++..+| |+++-.++..+.-.+-.+.-|-+.+....
T Consensus 7 L~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 7 LNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 345666664 79999999999999877775 3578899999988 77888888777666666555666555543
No 52
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=66.87 E-value=1.2e+02 Score=39.71 Aligned_cols=50 Identities=12% Similarity=0.206 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccCCccccccCCcchhhHHHHHHHHHHHHHHHHHHhh
Q 004940 95 WNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQF 155 (722)
Q Consensus 95 W~~~~~i~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~F 155 (722)
|+.+++++..++.+..-...+-. ..........++.++-.+|.+.++++.
T Consensus 1159 F~~~i~~li~ln~i~l~~~~~~q-----------s~~~~~~l~~in~vft~~Ft~E~vLKi 1208 (1592)
T KOG2301|consen 1159 FDYLIMLLIFLNTIIMMVETYDQ-----------SDTYTAILTILNAVFIVLFTIECILKV 1208 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554443332211 122344677888899999999998874
No 53
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=65.92 E-value=32 Score=33.66 Aligned_cols=55 Identities=27% Similarity=0.545 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--hcCCCHHHHHhhC--ChhHHHHHHHHHh
Q 004940 426 RQDAEQWMSHRMLPENLRDRIRRYEQYKWQE--TRGVEEEGLLRNL--PKDLRRDIKRHLC 482 (722)
Q Consensus 426 ~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~--~~~~~e~~ll~~L--p~~Lr~~I~~~l~ 482 (722)
+++++++++ ++|++-++.+.+||+-...+ ..|.+|+++.++| |+++-+++..+..
T Consensus 7 L~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 7 LNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYS 65 (181)
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 456777886 59999999999999887774 4578899999997 7778777776543
No 54
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=64.31 E-value=12 Score=29.90 Aligned_cols=45 Identities=31% Similarity=0.333 Sum_probs=33.2
Q ss_pred EEeCCCcEEEcCCCCcC-eEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 510 VLYTEKSFIVREGDPVE-EMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 510 ~~~~kge~Ii~eGd~~~-~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
..++||+..-..-.... ++++|++|.+.+. .+ |+ ...+++||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~-~~-----~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD-GE-----RVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET-TE-----EEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec-cE-----EeEccCCEEEE
Confidence 46778887766665666 9999999999887 33 33 36788998763
No 55
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=60.83 E-value=41 Score=31.01 Aligned_cols=69 Identities=7% Similarity=0.012 Sum_probs=42.7
Q ss_pred eEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEc
Q 004940 508 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQAL 587 (722)
Q Consensus 508 ~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Al 587 (722)
....++||..+-..-....++++|++|.+.+...++|+ ...+.+||.+--.+- ....+++.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~~--------------~~H~~~N~ 98 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDKH--------------DRHYLRAG 98 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECCC--------------CcEEEEcC
Confidence 33577888755332222247999999999876333344 367999998753221 13355555
Q ss_pred ccceEEEe
Q 004940 588 TEVEAFSL 595 (722)
Q Consensus 588 e~~ell~L 595 (722)
++++++.+
T Consensus 99 e~~~~l~v 106 (125)
T PRK13290 99 EDMRLVCV 106 (125)
T ss_pred CCEEEEEE
Confidence 77777665
No 56
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=55.95 E-value=19 Score=32.24 Aligned_cols=44 Identities=23% Similarity=0.515 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHHHHh----------hcCCCHHHHHhhCChhHHHHHHHH
Q 004940 437 MLPENLRDRIRRYEQYKWQE----------TRGVEEEGLLRNLPKDLRRDIKRH 480 (722)
Q Consensus 437 ~lp~~L~~rV~~y~~~~w~~----------~~~~~e~~ll~~Lp~~Lr~~I~~~ 480 (722)
-||+++|..|..++.-.-.. ....+...++..||++||++|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 58999999999987654332 123456799999999999999764
No 57
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=53.09 E-value=16 Score=41.68 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCC
Q 004940 362 YCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRML 438 (722)
Q Consensus 362 ~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~l 438 (722)
.|+||++..+..-|. |+.|.....++..-++-++-+++-+-..+|++..+. .|.|..-++.++...++..+
T Consensus 598 NsLWFsLgAFMQQG~-DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT-----vErMvsPIESaEDLAkQteI 668 (897)
T KOG1054|consen 598 NSLWFSLGAFMQQGC-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT-----VERMVSPIESAEDLAKQTEI 668 (897)
T ss_pred HHHHHHHHHHHhcCC-CCCccccccceeccchhhhhhhhhhhhhhHHHHHHh-----HHhhcCcchhHHHHhhccee
Confidence 399999999987663 999999999998888877777777766777777765 45555555666666665544
No 58
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=51.81 E-value=4e+02 Score=30.39 Aligned_cols=118 Identities=18% Similarity=0.313 Sum_probs=60.4
Q ss_pred HHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHH
Q 004940 399 VLFALLIGN--MQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRD 476 (722)
Q Consensus 399 ~lfa~lig~--~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~ 476 (722)
.++-+++|. .++++.+...-...++..+.+.++-| +-|+.|++|+ .+|+.|+..
T Consensus 213 ~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~m----------DGiK~YM~~R--------------kV~~~lq~r 268 (536)
T KOG0500|consen 213 VIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKM----------DGIKQYMRYR--------------KVPKALQTR 268 (536)
T ss_pred HHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHH----------HHHHHHHHHh--------------cccHHHHHH
Confidence 344445553 45666666666666666666655544 4567777765 456666655
Q ss_pred HHHH-HhH----HHhccCccccCCCHHHHHHHHhcceEEEeC-------------------CCcEEEcCCCCcCeEEEEE
Q 004940 477 IKRH-LCW----DLLMRVPMFEKMDDQLLDAMCDHLKPVLYT-------------------EKSFIVREGDPVEEMLFVM 532 (722)
Q Consensus 477 I~~~-l~~----~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~-------------------kge~Ii~eGd~~~~lyfI~ 532 (722)
+..- .|. .....-.....||+....+|+......+++ -...++.+|| |+..
T Consensus 269 VikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgD-----yICr 343 (536)
T KOG0500|consen 269 VIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGD-----YICR 343 (536)
T ss_pred HHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCC-----eEEe
Confidence 5432 111 112222333345555555554433322222 2344666666 6777
Q ss_pred eeEEEE--EEecCCe
Q 004940 533 RGNLVS--TTTYGGR 545 (722)
Q Consensus 533 ~G~v~v--~~~~~g~ 545 (722)
+|.+-. +....|+
T Consensus 344 KGdvgkEMyIVk~G~ 358 (536)
T KOG0500|consen 344 KGDVGKEMYIVKEGK 358 (536)
T ss_pred cCcccceEEEEEccE
Confidence 777743 3334444
No 59
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=51.50 E-value=15 Score=34.07 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004940 356 FPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLEST 415 (722)
Q Consensus 356 ~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~ 415 (722)
.......++|+.+.++.. +-++..|.+...+++.++..++++++.+...|++++++...
T Consensus 41 ~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445667788888777765 44568899999999999999999999999999999999754
No 60
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=50.65 E-value=41 Score=32.32 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=39.5
Q ss_pred EcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHH
Q 004940 519 VREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMAD 598 (722)
Q Consensus 519 i~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~ 598 (722)
....+ .++++++++|.+.+-..++|+-+ ...+++||+|=- |.- ...+-++.++|.++.|.+.
T Consensus 43 ~H~~~-tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~flv--------P~g------vpHsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 43 FHDDP-GEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFLL--------PPH------VPHSPQRPAGSIGLVIERK 104 (159)
T ss_pred cccCC-CceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEEe--------CCC------CCcccccCCCcEEEEEEeC
Confidence 44433 68999999999998666655422 367999998732 211 1223445566777766654
No 61
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=49.01 E-value=80 Score=24.82 Aligned_cols=47 Identities=15% Similarity=0.313 Sum_probs=24.2
Q ss_pred hHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHH
Q 004940 385 GEVFFAI---FISISGLVLFALLIGNMQKYLESTTV---RLEEMRVKRQDAEQWMS 434 (722)
Q Consensus 385 ~E~if~i---~~~i~G~~lfa~lig~~~~~l~~~~~---~~~e~~~k~~~~~~~m~ 434 (722)
+..++.+ .+.+++.+.|+.+ |-.++++.+. ...++++|++.+-+.+.
T Consensus 4 ~~~Iy~~~Vi~l~vl~~~~Ftl~---IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 4 GDLIYYILVIILIVLFGASFTLF---IRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 3444554 3333444444433 4444444332 22368888888877654
No 62
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=45.50 E-value=4e+02 Score=32.35 Aligned_cols=75 Identities=28% Similarity=0.464 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcccCCCCcc-----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 004940 361 FYCFWWGLRNLSSLGQNLKT-----STFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSH 435 (722)
Q Consensus 361 ~~slyw~l~tlstvG~gd~~-----~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~ 435 (722)
..+++|++-.++-++--++. ..+.++.+|.+-.++.=+++.-.+|+.|.+-.|..... ++..-|-..++-||+.
T Consensus 555 ~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~-ADvEWKFARAKLw~sy 633 (822)
T KOG3609|consen 555 SKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDD-ADVEWKFARAKLWMSY 633 (822)
T ss_pred HHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhc-chhHHHHHHHHHHHHH
Confidence 45899999777655443332 22455666666666666666677777777666655321 2233344566677765
Q ss_pred C
Q 004940 436 R 436 (722)
Q Consensus 436 ~ 436 (722)
.
T Consensus 634 F 634 (822)
T KOG3609|consen 634 F 634 (822)
T ss_pred h
Confidence 3
No 63
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=42.99 E-value=86 Score=31.33 Aligned_cols=58 Identities=22% Similarity=0.416 Sum_probs=38.4
Q ss_pred hCChhHHHHHHHHHhHHHhccCccc-cCCCHHHHHHHHhcceEEE--eCCCcEEEcCCCCcC
Q 004940 468 NLPKDLRRDIKRHLCWDLLMRVPMF-EKMDDQLLDAMCDHLKPVL--YTEKSFIVREGDPVE 526 (722)
Q Consensus 468 ~Lp~~Lr~~I~~~l~~~~l~~v~lF-~~ls~~~l~~l~~~l~~~~--~~kge~Ii~eGd~~~ 526 (722)
.+|.. .+.+...+...++.-.-.| ...++...+...+...+.. +++|+.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 44555 3333344444444332333 3467778888888899987 999999999999765
No 64
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=42.31 E-value=58 Score=31.88 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=47.3
Q ss_pred eEEEe-CCCc-EEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 004940 508 KPVLY-TEKS-FIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQ 585 (722)
Q Consensus 508 ~~~~~-~kge-~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~ 585 (722)
....+ -+|+ .-+.- +..++++++++|.+.+...++|+-. ...+++||+|=- |.- -..+-+
T Consensus 36 ~VmvvgGpn~r~d~H~-~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fll--------P~g------vpHsP~ 97 (177)
T PRK13264 36 IVMVVGGPNARTDFHY-DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFLL--------PPH------VPHSPQ 97 (177)
T ss_pred EEEEEccCCccccccc-CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEEe--------CCC------CCcCCc
Confidence 33344 4553 33333 5678999999999998776666421 367999998732 211 122445
Q ss_pred EcccceEEEecHHHHH
Q 004940 586 ALTEVEAFSLMADDLK 601 (722)
Q Consensus 586 Ale~~ell~L~~~df~ 601 (722)
+.++|..+.+.+..-.
T Consensus 98 r~~~tv~LviE~~r~~ 113 (177)
T PRK13264 98 REAGSIGLVIERKRPE 113 (177)
T ss_pred cCCCeEEEEEEeCCCC
Confidence 5688888888765433
No 65
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=41.96 E-value=1.2e+02 Score=33.52 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004940 357 PKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTT 416 (722)
Q Consensus 357 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~ 416 (722)
.--|+.+|=+++..+.+++-++....-..-..+++++.++++++|.+.|..++..++-.+
T Consensus 98 Lg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ 157 (371)
T PF10011_consen 98 LGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSN 157 (371)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 445777777777777777766653333333888889999999999999999988887443
No 66
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=39.11 E-value=50 Score=27.24 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=29.1
Q ss_pred EeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 511 LYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 511 ~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
...+|..-..-.. +++.+|++|.+.+... +|.. ..+++||.|-
T Consensus 13 ~~~pg~~~~~~~~--~E~~~vleG~v~it~~-~G~~-----~~~~aGD~~~ 55 (74)
T PF05899_consen 13 ECTPGKFPWPYPE--DEFFYVLEGEVTITDE-DGET-----VTFKAGDAFF 55 (74)
T ss_dssp EEECEEEEEEESS--EEEEEEEEEEEEEEET-TTEE-----EEEETTEEEE
T ss_pred EECCceeEeeCCC--CEEEEEEEeEEEEEEC-CCCE-----EEEcCCcEEE
Confidence 3455554433322 8888999999998654 5543 6789999874
No 67
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=38.09 E-value=4.7e+02 Score=29.25 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=14.7
Q ss_pred HHHHHHHHhh-hhhhhhhhcc
Q 004940 177 KAIAKRYLMS-YFIVDILAIL 196 (722)
Q Consensus 177 ~~Ia~~Yl~~-~F~iDlls~l 196 (722)
++..++|+++ |-++|++.++
T Consensus 233 ~~~g~~y~~~~WN~~e~~ii~ 253 (425)
T PF08016_consen 233 RREGRAYFKSFWNWLELLIIL 253 (425)
T ss_pred HHhhhHHhhhcCcHHHHHHHH
Confidence 4445789988 8888887654
No 68
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=36.84 E-value=8.8e+02 Score=29.79 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHhHH
Q 004940 436 RMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 484 (722)
Q Consensus 436 ~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~ 484 (722)
..||+.|+..|..++.... +..-.+++.++++...++...+...
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~-----l~~~~lF~~~s~~~l~~L~~~~~~~ 400 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPV-----VEKVYLFKGVSREILLLLVTKMKAE 400 (823)
T ss_pred HHcCHHHHHHHHHHHHHHH-----HhhCcchhcCCHHHHHHHHHhhhee
Confidence 4789999999987765433 2334678888988888887776443
No 69
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=36.16 E-value=1.1e+02 Score=28.67 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=37.0
Q ss_pred ceEEEeCCCcEEEcCCCC-cCeEEEEEeeEEEEEEecC-CeeeEeeeEEecCCCeec
Q 004940 507 LKPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTTYG-GRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~-~~~lyfI~~G~v~v~~~~~-g~e~~~~~~~l~~Gd~fG 561 (722)
+....+.+|...-..-.. .+++++|++|...+...+. +++.. ...+++||.+-
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~--~~~l~~GD~~~ 86 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVY--DARLREGDVFV 86 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEE--EEEecCCCEEE
Confidence 445577888876555433 5689999999999866443 33333 57899999874
No 70
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=35.84 E-value=65 Score=37.26 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004940 361 FYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLE 413 (722)
Q Consensus 361 ~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~ 413 (722)
-.++||+-..|..-|-|.-+|.+..-+++.++++=+.+++-|-..+|++..+.
T Consensus 615 ssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 615 SSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred hhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 35788877778777888889999888888888877777777777777777664
No 71
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=30.82 E-value=1.2e+02 Score=27.66 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=39.1
Q ss_pred ceEEEeCCCcEEEcCCCC-cCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechh
Q 004940 507 LKPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEA 563 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~-~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~ 563 (722)
.....++||+.+-.--.+ .+...+|++|.+++... |. ...+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~-----~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GE-----KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CC-----ceEecCCCEEEEC
Confidence 445688899998877776 77999999999998665 33 3678999998654
No 72
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=30.13 E-value=1.3e+02 Score=27.58 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=34.4
Q ss_pred cceEEEeCCCcEE-EcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCee
Q 004940 506 HLKPVLYTEKSFI-VREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 560 (722)
Q Consensus 506 ~l~~~~~~kge~I-i~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 560 (722)
......+++|+-+ .+--...++.|+|++|...+... ++ ...+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEE
Confidence 4556677888775 44445578999999999988653 33 2567888876
No 73
>PF08916 Phe_ZIP: Phenylalanine zipper; InterPro: IPR015012 The phenylalanine zipper consists of aromatic side chains from ten phenylalanine residues that are stacked within a hydrophobic core. This zipper mediates dimerisation of various proteins, such as APS, SH2-B and Lnk []. ; GO: 0004871 signal transducer activity, 0035556 intracellular signal transduction; PDB: 1Q2H_B.
Probab=27.93 E-value=2.5e+02 Score=22.30 Aligned_cols=49 Identities=12% Similarity=0.287 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHhHHHHHhh
Q 004940 637 AWRRHSKKKLAQSLQEAEDRLQDALATEAGALTSLGATMYASKFAANLL 685 (722)
Q Consensus 637 ~~~~~~~r~~~~~~~~aeery~~~~~~~p~~~~~vp~~~iASr~a~~~~ 685 (722)
.|...+++.....-.+=-..|..++.++|+....++.+..+.||+..-.
T Consensus 2 ~W~EFCE~HA~aaA~dfAk~~~~f~~~nP~~a~~~~~~~F~~kF~d~F~ 50 (59)
T PF08916_consen 2 GWREFCERHARAAARDFAKAFRRFINENPQYARPLSHRSFSRKFADLFQ 50 (59)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH-GGG-STTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHH
Confidence 3666677766665566566789999999999888999999999987543
No 74
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.73 E-value=1.4e+03 Score=29.47 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhhhhhhhhccChhHHHHhhhcc
Q 004940 177 KAIAKRYLMSYFIVDILAILPLPQLVVLIIVP 208 (722)
Q Consensus 177 ~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~ 208 (722)
++++--+-.-|+++|+++++=|..-+..-..|
T Consensus 853 ~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~ 884 (1381)
T KOG3614|consen 853 QKVRVYFADFWNLIDLLAILLFLVGPVLRLLP 884 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhheeEecC
Confidence 44444444449999999998775544433333
No 75
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=27.37 E-value=2.7e+02 Score=20.87 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004940 388 FFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAE 430 (722)
Q Consensus 388 if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~ 430 (722)
.++.+..+..++....+...++++-.+...+.+++|..-+++-
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~W 50 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDAW 50 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555666777777777777777777666643
No 76
>PRK09108 type III secretion system protein HrcU; Validated
Probab=25.12 E-value=2.5e+02 Score=30.80 Aligned_cols=68 Identities=4% Similarity=0.160 Sum_probs=50.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004940 381 STFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRR 448 (722)
Q Consensus 381 ~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~ 448 (722)
+......++.++..++..++.++++-.+..+.-+...-..+++-..+++++-+|+..-+|+++.|+|+
T Consensus 174 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq 241 (353)
T PRK09108 174 PPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKR 241 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 33445566677777777777777776777777666666666676777888889999999999988876
No 77
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=24.64 E-value=5.1e+02 Score=24.40 Aligned_cols=26 Identities=23% Similarity=0.100 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004940 258 GAALNLFLYMLASHIFGACWYLYSIE 283 (722)
Q Consensus 258 ~~~~~ll~~~l~~H~~~c~wy~l~~~ 283 (722)
..+..+++.++..++.++..+.-...
T Consensus 99 ~~~~~~~~~~~~~a~~~~~lf~~~~~ 124 (200)
T PF00520_consen 99 KFILLLFIVLLFFACIGYQLFGGSDN 124 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTS-
T ss_pred ccccccccccccccchhheecccccc
Confidence 34566666677777777777776643
No 78
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=23.58 E-value=2.5e+02 Score=30.61 Aligned_cols=65 Identities=5% Similarity=0.138 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004940 384 VGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRR 448 (722)
Q Consensus 384 ~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~ 448 (722)
....++..+..+++.++.++++-.+..+.-+...-..+++-..+++++-+++..-+|+++.|+|+
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~ 238 (342)
T TIGR01404 174 LAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRE 238 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 33445555555555555555555555555544445556666667888888888888888888876
No 79
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=22.99 E-value=2.4e+02 Score=23.95 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=43.3
Q ss_pred cceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 004940 506 HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQ 585 (722)
Q Consensus 506 ~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~ 585 (722)
......+.||..+-.......+..||++|.+.. +++ .+.+||++=.-. -+..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~~--------~~~~G~~~~~p~--------------g~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GDG--------RYGAGDWLRLPP--------------GSSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TTC--------EEETTEEEEE-T--------------TEEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CCc--------cCCCCeEEEeCC--------------CCccccC
Confidence 455678889998888777888888999999862 222 357888764321 1456777
Q ss_pred EcccceEEE
Q 004940 586 ALTEVEAFS 594 (722)
Q Consensus 586 Ale~~ell~ 594 (722)
+.++|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 888888875
No 80
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=22.40 E-value=3.3e+02 Score=32.39 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcC
Q 004940 494 KMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVE 526 (722)
Q Consensus 494 ~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~ 526 (722)
..+++..++.+..++++.+.+|++|+++|+..+
T Consensus 223 e~T~~~~~ea~~~v~~V~I~~gqiIv~~ge~It 255 (700)
T COG1480 223 EQTENLRQEALSKVEPVKISKGQIIVKEGEIIT 255 (700)
T ss_pred HHHHHHHHHHHhccCceEEecCceEeecCceec
Confidence 457778888999999999999999999999766
No 81
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.92 E-value=42 Score=31.00 Aligned_cols=12 Identities=50% Similarity=0.902 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCC
Q 004940 709 IPQKPAEPDFTA 720 (722)
Q Consensus 709 ~~~~~~~~~~~~ 720 (722)
+--|||||||+-
T Consensus 61 L~i~pPEPd~~~ 72 (165)
T COG4016 61 LDIKPPEPDFNY 72 (165)
T ss_pred hCCCCCCCCcch
Confidence 445788999873
No 82
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=21.04 E-value=1.7e+02 Score=26.16 Aligned_cols=48 Identities=21% Similarity=0.410 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhh---------cCC--C--HHHHHhhCChhHHHHHHHHHhHH
Q 004940 437 MLPENLRDRIRRYEQYKWQET---------RGV--E--EEGLLRNLPKDLRRDIKRHLCWD 484 (722)
Q Consensus 437 ~lp~~L~~rV~~y~~~~w~~~---------~~~--~--e~~ll~~Lp~~Lr~~I~~~l~~~ 484 (722)
-||+++|..|..-....-... .+. . ..++|..||++||.+|...-...
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 489999999865443321100 000 0 25899999999999998765443
No 83
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=20.30 E-value=2.7e+02 Score=30.74 Aligned_cols=52 Identities=17% Similarity=0.048 Sum_probs=35.1
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeec
Q 004940 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fG 561 (722)
+....+.+|...-.--....++.+|++|.+++...+ +|+.. ...+++||++-
T Consensus 69 ~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~---~~~L~~GD~~~ 121 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNY---IDDVGAGDLWY 121 (367)
T ss_pred ceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEE---EeEECCCCEEE
Confidence 344567787765332334568999999999987654 34431 24799999874
No 84
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=20.27 E-value=2.4e+02 Score=26.64 Aligned_cols=44 Identities=20% Similarity=0.410 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHHHH
Q 004940 391 IFISISGLVLFALLIGNMQKYLEST-------------TVRLEEMRVKRQDAEQWMS 434 (722)
Q Consensus 391 i~~~i~G~~lfa~lig~~~~~l~~~-------------~~~~~e~~~k~~~~~~~m~ 434 (722)
+++.++|+.+||++++.+.+.-... ....++|+.+++...+.++
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k 66 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYK 66 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHH
Confidence 5778999999999998764322111 1456889998888876655
No 85
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.14 E-value=3.7e+02 Score=26.87 Aligned_cols=40 Identities=10% Similarity=0.166 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHh
Q 004940 396 SGLVLFALLIGNMQKYLESTT---VRLEEMRVKRQDAEQWMSH 435 (722)
Q Consensus 396 ~G~~lfa~lig~~~~~l~~~~---~~~~e~~~k~~~~~~~m~~ 435 (722)
+++++.|.++|.+.++++... .+.+++++.+++.++.++.
T Consensus 48 lvilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~e 90 (201)
T COG1422 48 LVILVAAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFRE 90 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 445555666777777777654 4445666666666665543
Done!