Query 004940
Match_columns 722
No_of_seqs 578 out of 3436
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 10:28:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 1.4E-32 4.8E-37 298.8 17.8 187 358-619 160-346 (355)
2 3ukn_A Novel protein similar t 100.0 1.7E-30 5.7E-35 261.2 16.7 206 409-628 1-206 (212)
3 2ptm_A Hyperpolarization-activ 100.0 3.1E-29 1E-33 249.3 24.0 191 414-619 2-192 (198)
4 3bpz_A Potassium/sodium hyperp 100.0 7.9E-29 2.7E-33 247.2 22.8 189 413-617 2-190 (202)
5 1orq_C Potassium channel; volt 99.9 3.1E-21 1.1E-25 195.6 17.7 211 94-414 9-220 (223)
6 3dn7_A Cyclic nucleotide bindi 99.9 1.2E-20 4E-25 186.1 17.4 176 481-682 4-180 (194)
7 4ev0_A Transcription regulator 99.8 3E-18 1E-22 171.5 22.3 169 486-681 1-174 (216)
8 4f8a_A Potassium voltage-gated 99.8 2E-18 6.9E-23 164.1 17.5 144 462-618 5-148 (160)
9 3dv8_A Transcriptional regulat 99.8 9E-18 3.1E-22 168.4 19.7 178 484-688 3-193 (220)
10 3fx3_A Cyclic nucleotide-bindi 99.8 6.3E-18 2.2E-22 171.9 17.4 173 482-681 9-189 (237)
11 3e97_A Transcriptional regulat 99.8 1.6E-17 5.4E-22 168.3 19.4 177 483-688 5-199 (231)
12 3d0s_A Transcriptional regulat 99.8 8.6E-18 3E-22 169.7 17.3 172 483-681 5-188 (227)
13 3dkw_A DNR protein; CRP-FNR, H 99.7 1.1E-17 3.7E-22 168.7 15.9 173 483-681 8-189 (227)
14 2r9r_B Paddle chimera voltage 99.7 1.1E-17 3.7E-22 189.2 17.4 240 86-418 174-434 (514)
15 3iwz_A CAP-like, catabolite ac 99.7 4E-17 1.4E-21 164.8 19.9 173 483-681 10-198 (230)
16 2fmy_A COOA, carbon monoxide o 99.7 1.8E-17 6.3E-22 166.5 15.5 164 484-681 4-178 (220)
17 2gau_A Transcriptional regulat 99.7 4.3E-17 1.5E-21 165.2 18.3 167 488-681 14-191 (232)
18 1zyb_A Transcription regulator 99.7 2.3E-17 8E-22 167.5 15.4 173 483-681 17-197 (232)
19 3gyd_A CNMP-BD protein, cyclic 99.7 1.5E-16 5.2E-21 156.2 18.7 153 462-625 13-170 (187)
20 2oz6_A Virulence factor regula 99.7 3.7E-16 1.3E-20 155.1 20.2 164 495-681 1-175 (207)
21 1ft9_A Carbon monoxide oxidati 99.7 9.2E-17 3.1E-21 161.8 15.6 170 485-688 1-187 (222)
22 3ryp_A Catabolite gene activat 99.7 3.2E-16 1.1E-20 155.9 18.8 166 490-681 2-178 (210)
23 3ocp_A PRKG1 protein; serine/t 99.7 7.7E-17 2.6E-21 149.9 12.8 131 468-613 7-137 (139)
24 3mdp_A Cyclic nucleotide-bindi 99.7 1.6E-16 5.4E-21 147.7 14.4 131 483-624 5-139 (142)
25 1o5l_A Transcriptional regulat 99.7 9.9E-17 3.4E-21 160.7 13.2 168 489-682 4-176 (213)
26 3idb_B CAMP-dependent protein 99.7 1.4E-16 4.8E-21 152.1 12.6 127 475-612 29-155 (161)
27 2pqq_A Putative transcriptiona 99.7 6.5E-16 2.2E-20 144.5 15.2 124 483-617 4-128 (149)
28 1wgp_A Probable cyclic nucleot 99.7 3.9E-17 1.3E-21 151.2 6.8 129 484-612 6-134 (137)
29 3kcc_A Catabolite gene activat 99.7 1.2E-15 4E-20 157.9 18.6 163 493-681 55-228 (260)
30 2z69_A DNR protein; beta barre 99.6 1.6E-15 5.4E-20 142.9 15.3 128 483-620 11-139 (154)
31 3e6c_C CPRK, cyclic nucleotide 99.6 2E-15 6.9E-20 154.9 14.9 167 485-681 10-188 (250)
32 3pna_A CAMP-dependent protein 99.6 5.7E-15 2E-19 139.8 14.4 118 480-612 34-151 (154)
33 1vp6_A CNBD, cyclic-nucleotide 99.6 6.4E-15 2.2E-19 136.2 14.0 121 483-620 10-130 (138)
34 3la7_A Global nitrogen regulat 99.6 2.6E-14 9E-19 146.0 18.2 160 497-681 30-204 (243)
35 3shr_A CGMP-dependent protein 99.6 1.4E-14 4.9E-19 152.5 16.1 134 464-612 19-152 (299)
36 2bgc_A PRFA; bacterial infecti 99.6 7.2E-14 2.5E-18 142.2 18.6 162 493-680 2-179 (238)
37 4ava_A Lysine acetyltransferas 99.5 4.4E-14 1.5E-18 151.2 16.2 127 483-622 12-139 (333)
38 3shr_A CGMP-dependent protein 99.5 5.1E-14 1.7E-18 148.3 12.4 128 480-618 153-282 (299)
39 2d93_A RAP guanine nucleotide 99.5 8.9E-15 3E-19 135.0 5.6 124 470-608 2-127 (134)
40 2a9h_A Voltage-gated potassium 99.5 7.8E-14 2.7E-18 132.2 11.5 63 358-420 83-145 (155)
41 2qcs_B CAMP-dependent protein 99.5 4E-13 1.4E-17 140.6 17.0 126 479-619 34-159 (291)
42 2qcs_B CAMP-dependent protein 99.5 3.1E-13 1.1E-17 141.4 16.1 127 481-618 154-282 (291)
43 3of1_A CAMP-dependent protein 99.5 2.1E-13 7.1E-18 138.6 14.1 119 480-612 121-239 (246)
44 3tnp_B CAMP-dependent protein 99.5 2.8E-13 9.7E-18 149.8 15.6 125 476-611 137-261 (416)
45 3of1_A CAMP-dependent protein 99.5 1.5E-13 5.2E-18 139.6 12.3 116 482-612 5-120 (246)
46 3b02_A Transcriptional regulat 99.4 5.4E-13 1.8E-17 131.3 13.6 138 510-681 2-150 (195)
47 4din_B CAMP-dependent protein 99.4 2E-13 6.7E-18 149.3 11.0 129 480-619 244-374 (381)
48 4din_B CAMP-dependent protein 99.4 7.2E-13 2.5E-17 144.9 14.7 121 479-614 125-245 (381)
49 3vou_A ION transport 2 domain 99.4 2.1E-12 7.2E-17 121.9 15.2 86 360-445 53-148 (148)
50 1o7f_A CAMP-dependent RAP1 gua 99.4 1E-12 3.6E-17 147.2 14.3 139 468-616 26-165 (469)
51 3tnp_B CAMP-dependent protein 99.4 4.1E-13 1.4E-17 148.5 10.6 123 481-614 264-393 (416)
52 4h33_A LMO2059 protein; bilaye 99.4 3.3E-13 1.1E-17 125.5 7.9 92 360-451 44-135 (137)
53 2zcw_A TTHA1359, transcription 99.4 1.3E-12 4.4E-17 129.3 12.2 143 504-681 2-157 (202)
54 2ih3_C Voltage-gated potassium 99.4 2.7E-12 9.1E-17 116.9 11.7 60 358-417 60-119 (122)
55 1o7f_A CAMP-dependent RAP1 gua 99.3 3.8E-12 1.3E-16 142.6 13.0 121 480-614 333-455 (469)
56 3eff_K Voltage-gated potassium 99.2 3.4E-11 1.2E-15 112.3 11.6 90 358-448 39-129 (139)
57 3cf6_E RAP guanine nucleotide 99.2 2.6E-11 8.8E-16 142.0 12.7 133 463-610 12-146 (694)
58 4f7z_A RAP guanine nucleotide 99.2 5E-11 1.7E-15 146.1 14.7 135 464-611 23-160 (999)
59 3rvy_A ION transport protein; 99.1 2.2E-10 7.7E-15 119.9 13.2 60 358-417 179-244 (285)
60 4f7z_A RAP guanine nucleotide 99.1 6.3E-10 2.1E-14 136.3 16.2 115 480-608 333-449 (999)
61 2q67_A Potassium channel prote 99.0 2.3E-09 7.9E-14 96.2 12.3 57 360-416 50-106 (114)
62 2k1e_A Water soluble analogue 99.0 1.9E-10 6.5E-15 101.4 3.0 59 359-417 40-98 (103)
63 3ouf_A Potassium channel prote 98.9 5.2E-09 1.8E-13 91.0 11.3 55 360-414 33-87 (97)
64 3ldc_A Calcium-gated potassium 98.9 5.1E-09 1.8E-13 88.1 8.0 53 360-412 29-81 (82)
65 3pjs_K KCSA, voltage-gated pot 98.8 2.8E-10 9.5E-15 109.4 -1.5 62 359-420 67-128 (166)
66 1xl4_A Inward rectifier potass 98.7 3.1E-08 1.1E-12 103.9 10.1 56 359-414 82-137 (301)
67 1p7b_A Integral membrane chann 98.7 1.9E-08 6.6E-13 106.6 7.0 57 360-416 97-153 (333)
68 3um7_A Potassium channel subfa 98.6 1.2E-07 4.2E-12 99.0 10.4 57 359-415 115-171 (309)
69 2qks_A KIR3.1-prokaryotic KIR 98.5 2.9E-07 9.8E-12 97.3 11.3 58 359-416 78-135 (321)
70 3sya_A G protein-activated inw 98.4 1.3E-06 4.6E-11 92.3 11.9 59 360-418 92-152 (340)
71 4gx0_A TRKA domain protein; me 98.3 3.1E-06 1.1E-10 97.0 12.2 54 360-413 52-106 (565)
72 3ukm_A Potassium channel subfa 98.2 1.7E-06 5.9E-11 89.0 8.3 56 359-414 93-148 (280)
73 3um7_A Potassium channel subfa 98.2 7.3E-07 2.5E-11 93.2 4.1 60 360-419 225-290 (309)
74 4dxw_A Navrh, ION transport pr 98.1 6.2E-05 2.1E-09 75.7 16.8 75 94-198 13-88 (229)
75 3spc_A Inward-rectifier K+ cha 98.1 7.9E-06 2.7E-10 86.5 9.7 58 359-416 94-153 (343)
76 3ukm_A Potassium channel subfa 98.1 2.7E-06 9.4E-11 87.5 5.5 57 360-416 202-265 (280)
77 1lnq_A MTHK channels, potassiu 97.9 7.9E-07 2.7E-11 95.0 -2.1 55 361-415 47-101 (336)
78 2kyh_A KVAP, voltage-gated pot 97.6 0.0002 6.7E-09 66.8 8.8 78 94-201 22-99 (147)
79 1ors_C Potassium channel; volt 97.3 0.00053 1.8E-08 62.7 8.3 79 93-201 6-84 (132)
80 3rns_A Cupin 2 conserved barre 64.6 20 0.00068 35.0 8.6 68 507-595 39-106 (227)
81 3fjs_A Uncharacterized protein 63.7 22 0.00075 30.4 7.8 67 507-594 38-104 (114)
82 3kg2_A Glutamate receptor 2; I 60.1 8.9 0.00031 44.9 5.9 55 359-414 563-617 (823)
83 2ozj_A Cupin 2, conserved barr 57.4 28 0.00096 29.4 7.3 66 509-595 42-107 (114)
84 3lwc_A Uncharacterized protein 52.6 36 0.0012 29.5 7.2 46 508-561 43-88 (119)
85 2pfw_A Cupin 2, conserved barr 52.1 64 0.0022 27.0 8.8 68 507-595 36-103 (116)
86 1yhf_A Hypothetical protein SP 51.5 50 0.0017 27.6 8.0 68 507-595 42-109 (115)
87 1yfu_A 3-hydroxyanthranilate-3 40.3 40 0.0014 31.5 5.6 35 524-561 54-88 (174)
88 1o5u_A Novel thermotoga mariti 38.8 95 0.0033 25.9 7.5 47 507-561 33-79 (101)
89 1dgw_A Canavalin; duplicated s 38.4 45 0.0015 31.1 5.9 52 507-561 43-94 (178)
90 2gu9_A Tetracenomycin polyketi 38.1 50 0.0017 27.3 5.7 48 507-561 23-73 (113)
91 4e2g_A Cupin 2 conserved barre 36.8 51 0.0017 28.2 5.7 48 507-561 43-90 (126)
92 1v70_A Probable antibiotics sy 36.1 59 0.002 26.2 5.8 47 508-561 31-78 (105)
93 3h8u_A Uncharacterized conserv 35.4 55 0.0019 27.9 5.6 49 507-561 41-90 (125)
94 3rns_A Cupin 2 conserved barre 34.2 85 0.0029 30.3 7.4 68 507-595 155-223 (227)
95 2kxw_B Sodium channel protein 33.6 39 0.0013 21.5 3.0 19 626-644 4-22 (27)
96 2l53_B CAM, voltage-gated sodi 33.2 41 0.0014 22.1 3.1 20 626-645 4-23 (31)
97 3d0j_A Uncharacterized protein 30.6 95 0.0032 27.9 6.2 64 520-598 45-110 (140)
98 2fqp_A Hypothetical protein BP 28.1 37 0.0013 27.8 3.0 49 508-561 21-70 (97)
99 3ibm_A Cupin 2, conserved barr 27.8 74 0.0025 29.2 5.4 47 508-561 59-105 (167)
100 3bcw_A Uncharacterized protein 27.7 54 0.0018 28.7 4.1 45 510-561 54-98 (123)
101 2bnm_A Epoxidase; oxidoreducta 27.3 77 0.0026 29.6 5.6 49 510-561 122-173 (198)
102 2q30_A Uncharacterized protein 27.2 1.9E+02 0.0064 23.5 7.6 68 508-595 36-105 (110)
103 2o1q_A Putative acetyl/propion 26.8 71 0.0024 28.6 4.9 50 507-561 46-95 (145)
104 1fi2_A Oxalate oxidase, germin 26.5 1.2E+02 0.0042 28.5 6.9 53 507-561 74-130 (201)
105 3es4_A Uncharacterized protein 26.1 73 0.0025 27.7 4.6 46 509-561 46-91 (116)
106 4b29_A Dimethylsulfoniopropion 25.6 98 0.0033 30.0 5.8 45 511-561 138-182 (217)
107 2qnk_A 3-hydroxyanthranilate 3 25.2 1.6E+02 0.0056 29.6 7.5 64 514-595 38-104 (286)
108 3d82_A Cupin 2, conserved barr 25.2 1E+02 0.0035 24.7 5.4 51 525-596 50-100 (102)
109 1lr5_A Auxin binding protein 1 25.1 70 0.0024 28.9 4.7 50 508-561 44-99 (163)
110 1zvf_A 3-hydroxyanthranilate 3 24.9 94 0.0032 29.0 5.3 36 524-561 53-91 (176)
111 1q2h_A APS, adaptor protein wi 24.3 2.1E+02 0.0072 22.4 6.3 50 638-687 7-56 (69)
112 3kgz_A Cupin 2 conserved barre 24.0 69 0.0024 29.1 4.3 46 509-561 48-93 (156)
113 2b8m_A Hypothetical protein MJ 23.7 76 0.0026 26.7 4.4 46 510-561 32-77 (117)
114 4i4a_A Similar to unknown prot 23.6 1E+02 0.0035 26.2 5.2 80 508-608 37-120 (128)
115 3es1_A Cupin 2, conserved barr 23.5 77 0.0026 29.6 4.6 48 507-560 81-128 (172)
116 3jzv_A Uncharacterized protein 23.0 69 0.0024 29.5 4.2 46 509-561 57-102 (166)
117 2f4p_A Hypothetical protein TM 22.9 1.3E+02 0.0045 26.7 6.0 48 508-561 51-98 (147)
118 1vj2_A Novel manganese-contain 21.9 91 0.0031 26.8 4.5 46 509-561 52-97 (126)
119 2i45_A Hypothetical protein; n 21.6 60 0.002 26.9 3.2 68 512-599 35-102 (107)
120 1uij_A Beta subunit of beta co 21.5 93 0.0032 33.3 5.4 53 506-561 50-102 (416)
121 1o4t_A Putative oxalate decarb 21.3 1E+02 0.0035 26.8 4.8 47 508-561 60-107 (133)
122 2vqa_A SLL1358 protein, MNCA; 21.2 1.5E+02 0.005 30.6 6.8 52 507-561 54-107 (361)
123 4axo_A EUTQ, ethanolamine util 20.7 1.1E+02 0.0038 27.8 4.9 31 524-561 83-113 (151)
124 2q1z_B Anti-sigma factor CHRR, 20.5 1.3E+02 0.0046 28.3 5.7 65 506-595 126-192 (195)
125 1j58_A YVRK protein; cupin, de 20.5 1.4E+02 0.0049 31.1 6.6 52 507-561 81-133 (385)
126 2opk_A Hypothetical protein; p 20.2 98 0.0033 26.1 4.3 34 523-561 51-84 (112)
127 2ea7_A 7S globulin-1; beta bar 20.1 1.1E+02 0.0037 33.0 5.5 54 505-561 61-114 (434)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=1.4e-32 Score=298.81 Aligned_cols=187 Identities=25% Similarity=0.387 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCC
Q 004940 358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRM 437 (722)
Q Consensus 358 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~ 437 (722)
..|..|+||+++||||+||||++|.+..|++++++++++|++++++++|.+++.+++...+
T Consensus 160 ~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~------------------- 220 (355)
T 3beh_A 160 GSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR------------------- 220 (355)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred ccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 4578899999999999999999999999999999999999999999999998877532110
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcE
Q 004940 438 LPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSF 517 (722)
Q Consensus 438 lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~ 517 (722)
+++.+ ..+.++++++|+++++++++.++..++.+.++|||.
T Consensus 221 ---------~~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~ 261 (355)
T 3beh_A 221 ---------GDFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAV 261 (355)
T ss_dssp ---------HHHHH------------------------------HHC---------------------------------
T ss_pred ---------Hhhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCCCE
Confidence 00000 236788899999999999999999999999999999
Q ss_pred EEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecH
Q 004940 518 IVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMA 597 (722)
Q Consensus 518 Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~ 597 (722)
|++|||+++++|||.+|.++++..+ + ..+++|++|||.+++ .+ .+++.+++|.++|+++.+++
T Consensus 262 I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~l---~~------~~~~~~~~A~~~~~l~~i~~ 324 (355)
T 3beh_A 262 ICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMALI---SG------EPRSATVSAATTVSLLSLHS 324 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHHh---CC------CCcceEEEECccEEEEEEeH
Confidence 9999999999999999999997654 2 468999999999774 22 13578999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 004940 598 DDLKSVASQFRRLHSKQLQHAF 619 (722)
Q Consensus 598 ~df~~L~~~~P~l~~~~l~~~~ 619 (722)
++|+++++++|++.....+...
T Consensus 325 ~~f~~ll~~~p~~~~~l~~~l~ 346 (355)
T 3beh_A 325 ADFQMLCSSSPEIAEIFRKTAL 346 (355)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHCHHHHHHHHHHHH
Confidence 9999999999988765555433
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=1.7e-30 Score=261.24 Aligned_cols=206 Identities=23% Similarity=0.355 Sum_probs=177.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHhHHHhcc
Q 004940 409 QKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMR 488 (722)
Q Consensus 409 ~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~~l~~ 488 (722)
++++++++.+..+|+++++++++||+++++|++|+.||++|++|.|..+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999998887 7
Q ss_pred CccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhh
Q 004940 489 VPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWA 568 (722)
Q Consensus 489 v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~ 568 (722)
+|+|.+++++++..++..++.+.|+||++|+++||+++++|||.+|.|+++. +|. ++..+++|++||+.+++.
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~~----~~~~l~~G~~fGe~~~~~- 152 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DNT----VLAILGKGDLIGSDSLTK- 152 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SSC----EEEEECTTCEEECSCCSS-
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CCe----EEEEecCCCCcCcHHhcc-
Confidence 9999999999999999999999999999999999999999999999999985 332 378999999999998742
Q ss_pred cCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 004940 569 LDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRT 628 (722)
Q Consensus 569 ~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~ 628 (722)
+. ..+++++++|+++|+++.|++++|.+++.++|++....++.+.+.++...+.
T Consensus 153 --~~----~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr~ 206 (212)
T 3ukn_A 153 --EQ----VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLRE 206 (212)
T ss_dssp --SS----CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEECBC
T ss_pred --CC----CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcccccc
Confidence 11 0147889999999999999999999999999999998888887766655544
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=3.1e-29 Score=249.27 Aligned_cols=191 Identities=23% Similarity=0.422 Sum_probs=173.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHhHHHhccCcccc
Q 004940 414 STTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFE 493 (722)
Q Consensus 414 ~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~~l~~v~lF~ 493 (722)
+++.+..+|+++++++++||+++++|++|+.||++|++|.|. +++.+++++++.||++||.++..+++.++++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 567888999999999999999999999999999999999997 4789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCC
Q 004940 494 KMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQS 573 (722)
Q Consensus 494 ~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~ 573 (722)
+++++++..++..++.+.|+||++|+++||+++++|||.+|.|+++. .+|+ + +..+++|++||+.+++. ..
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~--~~~l~~G~~fGe~~~~~-~~--- 151 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--I--ATSLSDGSYFGEICLLT-RE--- 151 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--E--EEEECTTCEESCHHHHH-SS---
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--E--EEEecCCCEechHHHcC-CC---
Confidence 99999999999999999999999999999999999999999999987 4454 2 78999999999998752 22
Q ss_pred CCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 004940 574 SSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAF 619 (722)
Q Consensus 574 ~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~ 619 (722)
+++++++|+++|+++.|++++|.+++.++|++....++.+.
T Consensus 152 -----~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~ 192 (198)
T 2ptm_A 152 -----RRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAV 192 (198)
T ss_dssp -----CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred -----ccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHH
Confidence 26789999999999999999999999999988776555443
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.96 E-value=7.9e-29 Score=247.20 Aligned_cols=189 Identities=25% Similarity=0.420 Sum_probs=170.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHhHHHhccCccc
Q 004940 413 ESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMF 492 (722)
Q Consensus 413 ~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~~l~~v~lF 492 (722)
++++.+..+|+.+++++++||+++++|++|+.||++|++|.|.. ++.+++++++.||++||.+|..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 46788999999999999999999999999999999999999974 78999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCC
Q 004940 493 EKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQ 572 (722)
Q Consensus 493 ~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~ 572 (722)
.+++++++..++..++.+.|+||++|+++||+++++|||.+|.|+++. .+|++ ..+++|++||+.+++. ..
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~-----~~l~~G~~fGe~~~~~-~~-- 151 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE-----MKLSDGSYFGEICLLT-RG-- 151 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC-----EEEETTCEECHHHHHH-CS--
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE-----EEEcCCCEeccHHHhc-CC--
Confidence 999999999999999999999999999999999999999999999975 44554 3589999999988752 11
Q ss_pred CCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHH
Q 004940 573 SSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 617 (722)
Q Consensus 573 ~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~ 617 (722)
+++++++|+++|+++.|++++|.+++.++|++.....+.
T Consensus 152 ------~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 190 (202)
T 3bpz_A 152 ------RRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETV 190 (202)
T ss_dssp ------BCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHH
T ss_pred ------CcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHH
Confidence 367899999999999999999999999999876654443
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.86 E-value=3.1e-21 Score=195.62 Aligned_cols=211 Identities=12% Similarity=0.147 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccccCCccccccCCcchhhHHHHHHHHHHHHHHHHHHhheeeEEecCccccCCCeee
Q 004940 94 WWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELV 173 (722)
Q Consensus 94 ~W~~~~~i~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~F~t~y~~~~s~~~~~G~lV 173 (722)
.||.+++++.++++++.++....+ .+......+..++.+++++|.+|++++|.++.
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~----------~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~-------------- 64 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQ----------LSGEYLVRLYLVDLILVIILWADYAYRAYKSG-------------- 64 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHH----------HTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc----------cChhhhhHHHHHHHHHHHHHHHHHHHHHcccc--------------
Confidence 489999999999888877763222 12233557788999999999999999999862
Q ss_pred cCHHHHHHHHHhhhhhhhhhhccChhHHHHhhhccCCCCCchhhhhhhHHHHHHhhhhhHHHHhhhhhhHhhhh-hhhhh
Q 004940 174 DDPKAIAKRYLMSYFIVDILAILPLPQLVVLIIVPAVKGPVPLVAKEMLKTIIFCQYVPRIARIYPLYNDVKRT-SGILT 252 (722)
Q Consensus 174 ~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~lr~i~~~qyl~Rl~ri~~l~~~l~~~-~~~~~ 252 (722)
+ .++|+++ +++|+++++|+........ . ......+|++|++| +.|++|+.+..+...+. ...+.
T Consensus 65 -~----~~~y~~~-~iiDllailP~~~~~~~~~-------~-~~~~~~lr~lRllR-llR~~r~~~~~~~~~~~l~~~~~ 129 (223)
T 1orq_C 65 -D----PAGYVKK-TLYEIPALVPAGLLALIEG-------H-LAGLGLFRLVRLLR-FLRILLIISRGSKFLSAIADAAD 129 (223)
T ss_dssp -C----HHHHHHH-HHHHCTTHHHHHHHHHHHH-------H-HHTTTCHHHHHHHH-HHHHHHHHHSCSSHHHHHHHHHH
T ss_pred -c----HHHHHHH-hHHHHHHHHHHHHHHHHhc-------c-hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 4799998 9999999999976542100 0 00112333333222 33444443322211111 11111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHhhhhcCCCCCCccccccCCccCccccccccccCCCCCcccc
Q 004940 253 ETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIK 332 (722)
Q Consensus 253 ~~~~~~~~~~ll~~~l~~H~~~c~wy~l~~~~~~~cw~~~c~~~~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~ 332 (722)
+ .+....+++.++..|+.||++|.+.. . +
T Consensus 130 ~---~~l~~~~~~~~~~~~~~~~~~~~~e~--~----------------------------~------------------ 158 (223)
T 1orq_C 130 K---IRFYHLFGAVMLTVLYGAFAIYIVEY--P----------------------------D------------------ 158 (223)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHTTS--S----------------------------S------------------
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHh--C----------------------------C------------------
Confidence 1 12223333445678899998887420 0 0
Q ss_pred cCCccccchhHhhhhcccccCCChhHHHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004940 333 NSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYL 412 (722)
Q Consensus 333 ~~~~f~~gi~~~a~~~~~~~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l 412 (722)
.++....|..|+||+++|+||+||||++|.+..|++++++++++|++++|+.+|.+++.+
T Consensus 159 --------------------~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~ 218 (223)
T 1orq_C 159 --------------------PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMF 218 (223)
T ss_dssp --------------------TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011124678899999999999999999999999999999999999999999999999998
Q ss_pred Hh
Q 004940 413 ES 414 (722)
Q Consensus 413 ~~ 414 (722)
++
T Consensus 219 ~~ 220 (223)
T 1orq_C 219 QK 220 (223)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 6
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.85 E-value=1.2e-20 Score=186.09 Aligned_cols=176 Identities=11% Similarity=0.110 Sum_probs=122.3
Q ss_pred HhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEe-cCCeeeEeeeEEecCCCe
Q 004940 481 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDF 559 (722)
Q Consensus 481 l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~ 559 (722)
|...++++++.|.++++++++.+...++.+.|+||++|+++||+++++|||.+|.|+++.. .+|++.+ +.++.+|++
T Consensus 4 m~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~ 81 (194)
T 3dn7_A 4 MHTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWW 81 (194)
T ss_dssp CCHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCE
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcE
Confidence 3456788899999999999999999999999999999999999999999999999999875 4677755 899999999
Q ss_pred echhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 004940 560 CGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWR 639 (722)
Q Consensus 560 fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~ 639 (722)
|||...+....| +..+++|+++|+++.|++++|.+++.++|++....+ ..+.....
T Consensus 82 ~ge~~~~~~~~~--------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~----------------~~~~~~l~ 137 (194)
T 3dn7_A 82 LSDYMAFQKQQP--------ADFYIQSVENCELLSITYTEQENLFERIPALERYFR----------------LVYQKSFA 137 (194)
T ss_dssp ECCHHHHHHTCB--------CSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHH----------------HHHHHHHH
T ss_pred EeehHHHhcCCC--------CceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHH----------------HHHHHHHH
Confidence 998854433222 567999999999999999999999999997655332 33444566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHhHHHH
Q 004940 640 RHSKKKLAQSLQEAEDRLQDALATEAGALTSLGATMYASKFAA 682 (722)
Q Consensus 640 ~~~~r~~~~~~~~aeery~~~~~~~p~~~~~vp~~~iASr~a~ 682 (722)
...++.......++++||..++.++|++..++|+++||+.+..
T Consensus 138 ~~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~ 180 (194)
T 3dn7_A 138 AAQLRSKFQHMYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGF 180 (194)
T ss_dssp HHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCC
Confidence 6778888899999999999999999999999999999998765
No 7
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.80 E-value=3e-18 Score=171.46 Aligned_cols=169 Identities=19% Similarity=0.229 Sum_probs=140.7
Q ss_pred hccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEe-cCCeeeEeeeEEecCCCeechhh
Q 004940 486 LMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEAL 564 (722)
Q Consensus 486 l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~ 564 (722)
++++|+|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +.++++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 46789999999999999999999999999999999999999999999999999876 4677755 89999999999987
Q ss_pred hhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 004940 565 LTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKK 644 (722)
Q Consensus 565 l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r 644 (722)
++. .. ++..+++|+++|+++.|++++|.+++.++|++....++.+. .......++
T Consensus 79 ~~~-~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~----------------~~~~~~~~~ 133 (216)
T 4ev0_A 79 LLD-EG--------ERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLA----------------RRLREADLE 133 (216)
T ss_dssp HHH-CC--------BCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH----------------HHHHHHHHH
T ss_pred hcC-CC--------CcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHH----------------HHHHHHHHH
Confidence 742 12 25779999999999999999999999999987665444333 234556677
Q ss_pred HHHHHHHHHHHHHHHHHh----hcccccccchhHHHHhHHH
Q 004940 645 KLAQSLQEAEDRLQDALA----TEAGALTSLGATMYASKFA 681 (722)
Q Consensus 645 ~~~~~~~~aeery~~~~~----~~p~~~~~vp~~~iASr~a 681 (722)
.......++++|+..++. +.+.+..++++++||+.+.
T Consensus 134 ~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg 174 (216)
T 4ev0_A 134 LDLLSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAG 174 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhC
Confidence 777888899999988874 3567789999999999884
No 8
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.79 E-value=2e-18 Score=164.10 Aligned_cols=144 Identities=24% Similarity=0.344 Sum_probs=119.7
Q ss_pred HHHHHhhCChhHHHHHHHHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEe
Q 004940 462 EEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT 541 (722)
Q Consensus 462 e~~ll~~Lp~~Lr~~I~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~ 541 (722)
.+++++.||++||.++..+++.++++++++|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHH
Q 004940 542 YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 618 (722)
Q Consensus 542 ~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~ 618 (722)
++. ++..+++|++||+.+++. .. ..++..+++|.++|+++.|++++|.++++++|++....++.+
T Consensus 84 -~~~----~~~~~~~G~~fG~~~~~~---~~----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 84 -DDE----VVAILGKGDVFGDVFWKE---AT----LAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp -TTE----EEEEEETTCEEECCTTTC---SS----CCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred -CCE----EEEEecCCCEeCcHHHhc---Cc----ccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 378999999999998742 10 023678999999999999999999999999999887666554
No 9
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.77 E-value=9e-18 Score=168.44 Aligned_cols=178 Identities=12% Similarity=0.087 Sum_probs=144.9
Q ss_pred HHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEe-cCCeeeEeeeEEecCCCe--e
Q 004940 484 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDF--C 560 (722)
Q Consensus 484 ~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~--f 560 (722)
++++++|+|.++++++++.+...++.+.|++|++|+++||+++++|||.+|.|+++.. .+|++.+ +.++++|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeeeh
Confidence 5788999999999999999999999999999999999999999999999999999875 4577755 899999999 6
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 004940 561 GEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRR 640 (722)
Q Consensus 561 Ge~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~ 640 (722)
|+.+++ .+. ++..+++|+++|+++.|++++|.+++.++|++....++.+.+ ....
T Consensus 81 g~~~~~---~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~ 135 (220)
T 3dv8_A 81 SASCIM---RSI------QFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMAT----------------RFSD 135 (220)
T ss_dssp GGGGGC---TTC------CCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHH
T ss_pred hHHHHh---CCC------CCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHH
Confidence 888763 222 257799999999999999999999999999876654443322 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc----cccchhHHHHhHH------HHHhhccc
Q 004940 641 HSKKKLAQSLQEAEDRLQDALATEAGA----LTSLGATMYASKF------AANLLHPL 688 (722)
Q Consensus 641 ~~~r~~~~~~~~aeery~~~~~~~p~~----~~~vp~~~iASr~------a~~~~~~~ 688 (722)
..++.......++++|+..++.+.++. ..++++++||+.+ .+.+++.+
T Consensus 136 ~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L 193 (220)
T 3dv8_A 136 VMWLIEQIMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYF 193 (220)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 556666777888999999888877654 3488999999998 35555555
No 10
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.77 E-value=6.3e-18 Score=171.88 Aligned_cols=173 Identities=13% Similarity=0.111 Sum_probs=143.0
Q ss_pred hHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEe-cCCeeeEeeeEEecCCCee
Q 004940 482 CWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFC 560 (722)
Q Consensus 482 ~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~f 560 (722)
..++++++|+|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +.++++|++|
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~ 86 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGESF 86 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEEE
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCEe
Confidence 357899999999999999999999999999999999999999999999999999999875 4677755 8999999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 004940 561 GEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRR 640 (722)
Q Consensus 561 Ge~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~ 640 (722)
|+..++. .. ++..+++|+++|+++.|++++|.+++.++|++....++.+.+ ....
T Consensus 87 G~~~~~~-~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~ 141 (237)
T 3fx3_A 87 GEAVALR-NT--------PYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFG----------------HLHS 141 (237)
T ss_dssp CHHHHHH-TC--------CCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHH
T ss_pred chHHHhc-CC--------CCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHH
Confidence 9998852 22 257799999999999999999999999999877655444332 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-----ccccccch--hHHHHhHHH
Q 004940 641 HSKKKLAQSLQEAEDRLQDALATE-----AGALTSLG--ATMYASKFA 681 (722)
Q Consensus 641 ~~~r~~~~~~~~aeery~~~~~~~-----p~~~~~vp--~~~iASr~a 681 (722)
..++.......++++|+..++.+. |+...++| +++||+.+.
T Consensus 142 ~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg 189 (237)
T 3fx3_A 142 LVAQLEQLKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLG 189 (237)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhC
Confidence 566677777888999999888774 44456677 789999873
No 11
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.76 E-value=1.6e-17 Score=168.25 Aligned_cols=177 Identities=17% Similarity=0.223 Sum_probs=141.3
Q ss_pred HHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeec
Q 004940 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 483 ~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fG 561 (722)
.++++++|+|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++..+ +|++.+ +.++++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 467899999999999999999999999999999999999999999999999999998764 677755 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 004940 562 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRH 641 (722)
Q Consensus 562 e~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~ 641 (722)
+.+++ ... ++..+++|+++|+++.|++++|.+++.++|++....++.+.+.+ ...
T Consensus 83 ~~~~~---~~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l----------------~~~ 137 (231)
T 3e97_A 83 ETAVL---AHQ------ERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRV----------------TFL 137 (231)
T ss_dssp TTTTT---CCC------CCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HHH
T ss_pred eHHHh---CCC------CceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HHH
Confidence 99874 222 36789999999999999999999999999988776555443311 222
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhcc----------cccccchhHHHHhHHH------HHhhccc
Q 004940 642 SKKKLAQSLQEAE-DRLQDALATEA----------GALTSLGATMYASKFA------ANLLHPL 688 (722)
Q Consensus 642 ~~r~~~~~~~~ae-ery~~~~~~~p----------~~~~~vp~~~iASr~a------~~~~~~~ 688 (722)
.++.. ...+++ +|+..++.+.+ .+..++++++||+.+. +.+++.+
T Consensus 138 ~~~~~--~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L 199 (231)
T 3e97_A 138 NDELI--AFGQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRL 199 (231)
T ss_dssp HHHHH--HHHHCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHH--HhccChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHH
Confidence 22222 455666 88887777655 3667889999999883 5555555
No 12
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.76 E-value=8.6e-18 Score=169.69 Aligned_cols=172 Identities=20% Similarity=0.321 Sum_probs=142.6
Q ss_pred HHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeec
Q 004940 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 483 ~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fG 561 (722)
.++++++|+|.++++++++.++..++.+.|++|++|+++||+++++|||.+|.|+++..+ +|++.+ +..+.+|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 467899999999999999999999999999999999999999999999999999998764 577755 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 004940 562 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRH 641 (722)
Q Consensus 562 e~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~ 641 (722)
+.+++ .+. ++..+++|+++|+++.|++++|.+++.++|++....++.+.+ .....
T Consensus 83 ~~~~~---~~~------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~~ 137 (227)
T 3d0s_A 83 ELSIF---DPG------PRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLAR----------------RLRRT 137 (227)
T ss_dssp CHHHH---SCS------CCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHH----------------HHHHH
T ss_pred eHHHc---CCC------CceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH----------------HHHHH
Confidence 99875 222 257799999999999999999999999999877655544332 33445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-----------cccccccchhHHHHhHHH
Q 004940 642 SKKKLAQSLQEAEDRLQDALAT-----------EAGALTSLGATMYASKFA 681 (722)
Q Consensus 642 ~~r~~~~~~~~aeery~~~~~~-----------~p~~~~~vp~~~iASr~a 681 (722)
.++.......++++|+..++.. .+.+..++++++||+.+.
T Consensus 138 ~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg 188 (227)
T 3d0s_A 138 NNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVG 188 (227)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhC
Confidence 5666677778888998776654 234667899999999764
No 13
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.75 E-value=1.1e-17 Score=168.71 Aligned_cols=173 Identities=16% Similarity=0.181 Sum_probs=142.2
Q ss_pred HHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeec
Q 004940 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 483 ~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fG 561 (722)
.++++++|+|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++..+ +|++.+ +.++++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 568899999999999999999999999999999999999999999999999999997643 566655 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 004940 562 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRH 641 (722)
Q Consensus 562 e~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~ 641 (722)
+.+++ .+. +.+..+++|+++|+++.|++++|.+++.++|++....++.+.+ .....
T Consensus 86 ~~~~~---~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~~ 141 (227)
T 3dkw_A 86 EAMMF---MDT-----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST----------------RLHQR 141 (227)
T ss_dssp CTTTT---TTC-----SBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHH----------------HHHHH
T ss_pred eHHhc---CCC-----CCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHH
Confidence 98864 221 1257799999999999999999999999999877655444332 23344
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hccc-------ccccchhHHHHhHHH
Q 004940 642 SKKKLAQSLQEAEDRLQDALA-TEAG-------ALTSLGATMYASKFA 681 (722)
Q Consensus 642 ~~r~~~~~~~~aeery~~~~~-~~p~-------~~~~vp~~~iASr~a 681 (722)
.++.......++++|+..++. ..+. +..++++++||+.+.
T Consensus 142 ~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg 189 (227)
T 3dkw_A 142 IDEIETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLS 189 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhC
Confidence 556666777899999988764 3443 678899999999883
No 14
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.75 E-value=1.1e-17 Score=189.23 Aligned_cols=240 Identities=14% Similarity=0.217 Sum_probs=148.1
Q ss_pred CCC-ChhHHHHHHHHHHHHHHHHHhhhhccccccccCCc----cc-------------cccCCcchhhHHHHHHHHHHHH
Q 004940 86 DPQ-GPFLQWWNKIFVLSCVIALSIDPLFFYMPVIDGKR----KC-------------LGLDKTLEITACVLRSFIDTFY 147 (722)
Q Consensus 86 ~P~-s~~~~~W~~~~~i~~~~~~~~~Pl~~~~~~~~~~~----~c-------------~~~~~~~~~~~~~~~~~~d~~f 147 (722)
+|. |...+.|+.++++++++++++..+.- .|...... .+ ..........+.+++.++.++|
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iF 252 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLET-LPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWF 252 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhhc-cccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence 465 46678889988888888888877763 22221110 00 0001113446788999999999
Q ss_pred HHHHHHhheeeEEecCccccCCCeeecCHHHHHHHHHhh-hhhhhhhhccChhHHHHhhhccCCCCCch--hhhhhhHHH
Q 004940 148 ILRIIFQFRTGFIARSSRVFGRGELVDDPKAIAKRYLMS-YFIVDILAILPLPQLVVLIIVPAVKGPVP--LVAKEMLKT 224 (722)
Q Consensus 148 ~iDi~l~F~t~y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~--~~~~~~lr~ 224 (722)
.+|++++|.++- . .++|+++ |.++|+++++|+...+..... ..+.. ......+|+
T Consensus 253 tiE~ilR~~~~~---~----------------k~~Y~ks~wniiDli~iip~~i~l~~~~~---~~~~~~~~~~~~~lrv 310 (514)
T 2r9r_B 253 SFEFLVRFFACP---S----------------KAGFFTNIMNIIDIVAIIPYYVTIFLTES---NKSVLQFQNVRRVVQI 310 (514)
T ss_dssp HHHHHHHHHHSS---C----------------SSSSTTSHHHHHHHHTTHHHHHHHHHHHT---SCSHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhCC---c----------------HHHHHhchhHHHHHHHHHHHHHHHHhhhc---cccchhhhhHHHHHHH
Confidence 999999998751 0 1479998 899999999999655432211 11111 111234444
Q ss_pred HHHhhhhhHHHHhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHhhhhcCCCCCCcc
Q 004940 225 IIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTT 304 (722)
Q Consensus 225 i~~~qyl~Rl~ri~~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wy~l~~~~~~~cw~~~c~~~~~~~~c~~ 304 (722)
+|+++ +.|++|+.+....+......+... .......+++.++..+++||++|+.- .
T Consensus 311 lRllR-vlRilkL~r~~~~l~~l~~tl~~s-~~~l~~ll~~l~i~~~if~~~~~~~e--~-------------------- 366 (514)
T 2r9r_B 311 FRIMR-ILRIFKLSRHSKGLQILGQTLKAS-MRELGLLIFFLFIGVILFSSAVYFAE--A-------------------- 366 (514)
T ss_dssp HHHHG-GGGGGGGGGSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHH--T--------------------
T ss_pred HHHHH-HHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhheee--c--------------------
Confidence 43332 333333333322222222111111 11111222223345777888777531 0
Q ss_pred ccccCCccCccccccccccCCCCCcccccCCccccchhHhhhhcccccCCChhHHHHHHHHHHHHHhcccCCCCccCCch
Q 004940 305 NLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFV 384 (722)
Q Consensus 305 ~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~~f~~gi~~~a~~~~~~~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~ 384 (722)
|. ..+.+..|..|+||++.|+||+||||+.|.+.
T Consensus 367 -------------~~---------------------------------~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~ 400 (514)
T 2r9r_B 367 -------------DE---------------------------------RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTI 400 (514)
T ss_dssp -------------TC---------------------------------TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSH
T ss_pred -------------cC---------------------------------CCccccchhhhhheeeeEEEecccCCCCCCCc
Confidence 00 01122446789999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004940 385 GEVFFAIFISISGLVLFALLIGNMQKYLESTTVR 418 (722)
Q Consensus 385 ~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~ 418 (722)
.+++|+++++++|++++++.+|.+.+.++....+
T Consensus 401 ~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~ 434 (514)
T 2r9r_B 401 GGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 434 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred chHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888766543
No 15
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.75 E-value=4e-17 Score=164.83 Aligned_cols=173 Identities=15% Similarity=0.177 Sum_probs=132.6
Q ss_pred HHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeec
Q 004940 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 483 ~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fG 561 (722)
...+++.++|.++++++++.+...++.+.|++|++|+++||+++++|||.+|.|+++..+ +|++.+ +.++++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 457888999999999999999999999999999999999999999999999999998754 677755 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHh-----HHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 004940 562 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQF-----RRLHSKQLQHAFRFHSVQWRTWAACFIQA 636 (722)
Q Consensus 562 e~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~-----P~l~~~~l~~~~r~ys~~~~~~~~~~~q~ 636 (722)
+..++.. ..++..+++|+++|+++.|++++|.+++.++ |++....++.+. .
T Consensus 88 ~~~~~~~--------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~----------------~ 143 (230)
T 3iwz_A 88 EMGLFIE--------SDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLS----------------K 143 (230)
T ss_dssp CGGGTSC--------CSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHH----------------H
T ss_pred ehhhhcC--------CCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHH----------------H
Confidence 9988521 1235779999999999999999999999999 977665444332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------cccccchhHHHHhHHH
Q 004940 637 AWRRHSKKKLAQSLQEAEDRLQDALATEA----------GALTSLGATMYASKFA 681 (722)
Q Consensus 637 ~~~~~~~r~~~~~~~~aeery~~~~~~~p----------~~~~~vp~~~iASr~a 681 (722)
......++.......++++|+..++.+.. .+..++++++||+.+.
T Consensus 144 ~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg 198 (230)
T 3iwz_A 144 RLLDTTRKASRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVG 198 (230)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhC
Confidence 33455667777788899999988876532 2456789999999875
No 16
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.74 E-value=1.8e-17 Score=166.54 Aligned_cols=164 Identities=13% Similarity=0.156 Sum_probs=140.2
Q ss_pred HHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechh
Q 004940 484 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEA 563 (722)
Q Consensus 484 ~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~ 563 (722)
.+++++|+|..+++++++.++..++.+.|++|++|+++||+++++|||.+|.|+++...+|++.+ +.++++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC-
Confidence 46788999999999999999999999999999999999999999999999999997566787755 899999999998
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 004940 564 LLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSK 643 (722)
Q Consensus 564 ~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~ 643 (722)
+ +..+++|+++|+++.|++++|.+++.++|++....++.+ ........+
T Consensus 81 -------~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~----------------~~~~~~~~~ 129 (220)
T 2fmy_A 81 -------H--------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVL----------------GDLLKNSLT 129 (220)
T ss_dssp -------C--------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHH----------------HHHHHHHHH
T ss_pred -------c--------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHH----------------HHHHHHHHH
Confidence 2 467999999999999999999999999998766554433 234455667
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc-----------ccccchhHHHHhHHH
Q 004940 644 KKLAQSLQEAEDRLQDALATEAG-----------ALTSLGATMYASKFA 681 (722)
Q Consensus 644 r~~~~~~~~aeery~~~~~~~p~-----------~~~~vp~~~iASr~a 681 (722)
+.......++++|+..++.+.++ +..++++++||+.+.
T Consensus 130 ~~~~l~~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg 178 (220)
T 2fmy_A 130 IINGLVFKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLG 178 (220)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhC
Confidence 77777888999999888877653 567899999999875
No 17
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.74 E-value=4.3e-17 Score=165.16 Aligned_cols=167 Identities=13% Similarity=0.173 Sum_probs=136.2
Q ss_pred cCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeechhhhh
Q 004940 488 RVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLT 566 (722)
Q Consensus 488 ~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~ 566 (722)
.+|+|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++..+ +|++.+ +.++++|++||+.+++
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~~~ 91 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRPYF 91 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHHHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeehhh
Confidence 5789999999999999999999999999999999999999999999999997654 566655 8999999999999875
Q ss_pred hhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 004940 567 WALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKL 646 (722)
Q Consensus 567 ~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r~~ 646 (722)
. .. ++..+++|+++|+++.|++++|.+++.++|++....++.+.+ ......++..
T Consensus 92 ~-~~--------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~~~~~~~ 146 (232)
T 2gau_A 92 A-EE--------TCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK----------------ELGYAERRTV 146 (232)
T ss_dssp H-TS--------CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHH
T ss_pred C-CC--------CcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHH
Confidence 2 22 257799999999999999999999999999877655544332 3444566666
Q ss_pred HHHHHHHHHHHHHHHh----hc------ccccccchhHHHHhHHH
Q 004940 647 AQSLQEAEDRLQDALA----TE------AGALTSLGATMYASKFA 681 (722)
Q Consensus 647 ~~~~~~aeery~~~~~----~~------p~~~~~vp~~~iASr~a 681 (722)
.....++++|+..++. ++ +.+..++++++||+.+.
T Consensus 147 ~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg 191 (232)
T 2gau_A 147 TLTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSN 191 (232)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhC
Confidence 6777888999887773 22 45678999999998774
No 18
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.73 E-value=2.3e-17 Score=167.53 Aligned_cols=173 Identities=12% Similarity=0.142 Sum_probs=143.3
Q ss_pred HHHhccCccccCCCHHHHHHHHhc--ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEe-cCCeeeEeeeEEecCCCe
Q 004940 483 WDLLMRVPMFEKMDDQLLDAMCDH--LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDF 559 (722)
Q Consensus 483 ~~~l~~v~lF~~ls~~~l~~l~~~--l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~ 559 (722)
...++++++|..+++++++.++.. ++.+.|++|++|+++||+++++|||.+|.|+++.. .+|++.+ +.++++|++
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G~~ 94 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAPYL 94 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESSEE
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCCCe
Confidence 567899999999999999999998 99999999999999999999999999999999764 4577755 899999999
Q ss_pred echhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 004940 560 CGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWR 639 (722)
Q Consensus 560 fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~ 639 (722)
||+.+++ ... +++..+++|+++|+++.|++++|.+++.++|++....++.+.+ ...
T Consensus 95 fG~~~~~---~~~-----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~----------------~l~ 150 (232)
T 1zyb_A 95 IEPQSLF---GMN-----TNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSN----------------RAQ 150 (232)
T ss_dssp ECGGGGS---SSC-----CBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHH----------------HHH
T ss_pred eeehHHh---CCC-----CCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHH----------------HHH
Confidence 9999874 221 1257799999999999999999999999999876655444332 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc---c--cccccchhHHHHhHHH
Q 004940 640 RHSKKKLAQSLQEAEDRLQDALATE---A--GALTSLGATMYASKFA 681 (722)
Q Consensus 640 ~~~~r~~~~~~~~aeery~~~~~~~---p--~~~~~vp~~~iASr~a 681 (722)
...++.......++++|+..++.+. | .+..++++++||+.+.
T Consensus 151 ~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG 197 (232)
T 1zyb_A 151 NLYSRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLD 197 (232)
T ss_dssp HHHHHTTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhC
Confidence 4556666667788999999887763 3 4678899999998775
No 19
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.72 E-value=1.5e-16 Score=156.25 Aligned_cols=153 Identities=15% Similarity=0.220 Sum_probs=126.3
Q ss_pred HHHHHhhCChhHH----HHHHHHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEE
Q 004940 462 EEGLLRNLPKDLR----RDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLV 537 (722)
Q Consensus 462 e~~ll~~Lp~~Lr----~~I~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~ 537 (722)
+..+.+.+++++- .+.......++++++|+|.++++++++.++..++.+.|++|++|+++|++++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 3445555555542 334445567899999999999999999999999999999999999999999999999999999
Q ss_pred EEEec-CCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHH
Q 004940 538 STTTY-GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQ 616 (722)
Q Consensus 538 v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~ 616 (722)
++..+ +|++.+ +..+++|++||+.+++ ... ++..+++|+++|+++.|++++|.+++.++|++...+++
T Consensus 93 v~~~~~~g~~~~--~~~~~~G~~fGe~~~l-~~~--------~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~ 161 (187)
T 3gyd_A 93 VIKDIPNKGIQT--IAKVGAGAIIGEMSMI-DGM--------PRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLI 161 (187)
T ss_dssp EEEEETTTEEEE--EEEEETTCEESHHHHH-HCC--------CCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEECCCCCeEE--EEEccCCCeeeeHHHh-CCC--------CeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHH
Confidence 98764 677755 8999999999999875 222 25779999999999999999999999999998887776
Q ss_pred HHHHHhhhh
Q 004940 617 HAFRFHSVQ 625 (722)
Q Consensus 617 ~~~r~ys~~ 625 (722)
.+.+..+..
T Consensus 162 ~l~~~l~~r 170 (187)
T 3gyd_A 162 RLLQLLTAR 170 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665544433
No 20
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.71 E-value=3.7e-16 Score=155.11 Aligned_cols=164 Identities=20% Similarity=0.241 Sum_probs=129.8
Q ss_pred CCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeechhhhhhhcCCCC
Q 004940 495 MDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWALDPQS 573 (722)
Q Consensus 495 ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~ 573 (722)
|++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++..+ +|++.+ +.++++|++||+.+++.... .
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~~~~~~-~- 76 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGLFEKEG-S- 76 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTTCC------
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHHhcCCC-C-
Confidence 689999999999999999999999999999999999999999998754 577755 89999999999998742110 0
Q ss_pred CCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004940 574 SSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEA 653 (722)
Q Consensus 574 ~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r~~~~~~~~a 653 (722)
.+++..+++|+++|+++.|++++|.+++.++|++....++.+.+ ......++.......++
T Consensus 77 ---~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~~~~~~~~~~~l~~~~~ 137 (207)
T 2oz6_A 77 ---EQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD----------------RLRKTTRKVGDLAFLDV 137 (207)
T ss_dssp ----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHCCH
T ss_pred ---CCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHHHhcCCH
Confidence 00357799999999999999999999999999877655444332 23344566667777889
Q ss_pred HHHHHHHHhh---cc------c-ccccchhHHHHhHHH
Q 004940 654 EDRLQDALAT---EA------G-ALTSLGATMYASKFA 681 (722)
Q Consensus 654 eery~~~~~~---~p------~-~~~~vp~~~iASr~a 681 (722)
++|+..++.. .+ + +..++++++||+.+.
T Consensus 138 ~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg 175 (207)
T 2oz6_A 138 TGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVG 175 (207)
T ss_dssp HHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhC
Confidence 9999777642 22 2 567899999998764
No 21
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.71 E-value=9.2e-17 Score=161.77 Aligned_cols=170 Identities=12% Similarity=0.058 Sum_probs=141.7
Q ss_pred HhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhh
Q 004940 485 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEAL 564 (722)
Q Consensus 485 ~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~ 564 (722)
+++++|+|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++...+|++.+ +.++++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec---
Confidence 3678899999999999999999999999999999999999999999999999997556788755 89999999999
Q ss_pred hhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 004940 565 LTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKK 644 (722)
Q Consensus 565 l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r 644 (722)
.+ +..+++|+++|+++.|++++|.+++.++|++....++.+ ........++
T Consensus 76 -----~~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l----------------~~~l~~~~~~ 126 (222)
T 1ft9_A 76 -----MH--------SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAIL----------------GRALTSCMRT 126 (222)
T ss_dssp -----SC--------SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHH----------------HHHHHHHHHH
T ss_pred -----CC--------CCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHH----------------HHHHHHHHHH
Confidence 12 567999999999999999999999999997766544433 2344556677
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-----------cccccchhHHHHhHHH------HHhhccc
Q 004940 645 KLAQSLQEAEDRLQDALATEA-----------GALTSLGATMYASKFA------ANLLHPL 688 (722)
Q Consensus 645 ~~~~~~~~aeery~~~~~~~p-----------~~~~~vp~~~iASr~a------~~~~~~~ 688 (722)
.......++++|+..++.+.+ .+..++++++||+.+. +.+++.+
T Consensus 127 ~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L 187 (222)
T 1ft9_A 127 IEDLMFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSL 187 (222)
T ss_dssp HHHHHTHHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHH
Confidence 778888999999999988766 3567799999998764 3455555
No 22
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.70 E-value=3.2e-16 Score=155.92 Aligned_cols=166 Identities=17% Similarity=0.209 Sum_probs=130.8
Q ss_pred ccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEe-cCCeeeEeeeEEecCCCeechhhhhhh
Q 004940 490 PMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWA 568 (722)
Q Consensus 490 ~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~ 568 (722)
+++..+++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +.++++|++||+.+++..
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~~~~ 79 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFEE 79 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTTTST
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHHhcC
Confidence 4567799999999999999999999999999999999999999999999876 4677755 899999999999987521
Q ss_pred cCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 004940 569 LDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQ 648 (722)
Q Consensus 569 ~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r~~~~ 648 (722)
.+++..+++|+++|+++.|++++|.+++.++|++....++.+.+ ......++....
T Consensus 80 --------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~~~~~~~~~ 135 (210)
T 3ryp_A 80 --------GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR----------------RLQVTSEKVGNL 135 (210)
T ss_dssp --------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH----------------HHHHHHHHHHHH
T ss_pred --------CCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHH----------------HHHHHHHHHHHH
Confidence 11367799999999999999999999999999876655443322 334455666677
Q ss_pred HHHHHHHHHHHHHhhc---------c-cccccchhHHHHhHHH
Q 004940 649 SLQEAEDRLQDALATE---------A-GALTSLGATMYASKFA 681 (722)
Q Consensus 649 ~~~~aeery~~~~~~~---------p-~~~~~vp~~~iASr~a 681 (722)
...++++|+..++... | .+..++++++||+.+.
T Consensus 136 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg 178 (210)
T 3ryp_A 136 AFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVG 178 (210)
T ss_dssp HHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHT
T ss_pred hhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhC
Confidence 7788899987776542 2 2345789999999874
No 23
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.70 E-value=7.7e-17 Score=149.87 Aligned_cols=131 Identities=18% Similarity=0.285 Sum_probs=112.8
Q ss_pred hCChhHHHHHHHHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeee
Q 004940 468 NLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTG 547 (722)
Q Consensus 468 ~Lp~~Lr~~I~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~ 547 (722)
++|..+|.+...+...++++++++|.++++++++.++..++.+.|++|++|+++|+.++++|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 6888999999999999999999999999999999999999999999999999999999999999999999854 443
Q ss_pred EeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHH
Q 004940 548 FFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSK 613 (722)
Q Consensus 548 ~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~ 613 (722)
++..+.+|++||+.+++. .. ++..+++|+++|+++.|++++|.+++.++|.+..+
T Consensus 83 --~~~~~~~G~~fGe~~~l~-~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 --KLCTMGPGKVFGELAILY-NC--------TRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp --EEEEECTTCEESCHHHHH-CC--------CCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred --EEEEeCCCCEeccHHHHC-CC--------CcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 278999999999998752 22 25779999999999999999999999999976553
No 24
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.70 E-value=1.6e-16 Score=147.65 Aligned_cols=131 Identities=14% Similarity=0.187 Sum_probs=110.6
Q ss_pred HHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEee---eEEecCCC
Q 004940 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFN---AVYLKAGD 558 (722)
Q Consensus 483 ~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~---~~~l~~Gd 558 (722)
.++++++|+|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++..+ +|++ .+ +..+++|+
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~~~~~G~ 82 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGS--AANSTVCSVVPGA 82 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC-----------CEEEEECTTC
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCc--eEeeeEEEecCCC
Confidence 457889999999999999999999999999999999999999999999999999997644 4443 23 68899999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 004940 559 FCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSV 624 (722)
Q Consensus 559 ~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~ 624 (722)
+||+.+++ .+ .++..+++|+++|+++.|++++|.+++.++|++...+++.+.+..++
T Consensus 83 ~fG~~~~~---~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 139 (142)
T 3mdp_A 83 IFGVSSLI---KP------YHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLA 139 (142)
T ss_dssp EECGGGSS---TT------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EechHHHc---CC------CCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 99998874 22 23677999999999999999999999999999988877777665444
No 25
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.69 E-value=9.9e-17 Score=160.68 Aligned_cols=168 Identities=14% Similarity=0.156 Sum_probs=106.5
Q ss_pred CccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEe-cCCeeeEeeeEEecCCCeechhhhhh
Q 004940 489 VPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTW 567 (722)
Q Consensus 489 v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~ 567 (722)
-|.|+..++.+.+.+...++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +.++++|++||+..++.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~~~ 81 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFIFS 81 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGTTS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHHhc
Confidence 47788899999999999999999999999999999999999999999999875 4677755 89999999999998752
Q ss_pred hcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 004940 568 ALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLA 647 (722)
Q Consensus 568 ~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r~~~ 647 (722)
. ..++..+++|+++|+++.|++++|.+++.++|++....++.+.+ ......++...
T Consensus 82 ~--------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~----------------~~~~~~~~~~~ 137 (213)
T 1o5l_A 82 S--------EPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSE----------------HFRVVSEKLFF 137 (213)
T ss_dssp S--------SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHH
T ss_pred C--------CCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHH
Confidence 1 11357799999999999999999999999999877655544332 12335666777
Q ss_pred HHHHHHHHHHHHHHhhcc----cccccchhHHHHhHHHH
Q 004940 648 QSLQEAEDRLQDALATEA----GALTSLGATMYASKFAA 682 (722)
Q Consensus 648 ~~~~~aeery~~~~~~~p----~~~~~vp~~~iASr~a~ 682 (722)
....++++|+..++.+.+ .+..++++++||+.+..
T Consensus 138 l~~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~ 176 (213)
T 1o5l_A 138 LTTKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGC 176 (213)
T ss_dssp HHCC-----------------------------------
T ss_pred HhhCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCC
Confidence 788899999999988877 56778999999998864
No 26
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.68 E-value=1.4e-16 Score=152.06 Aligned_cols=127 Identities=14% Similarity=0.163 Sum_probs=112.5
Q ss_pred HHHHHHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEe
Q 004940 475 RDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYL 554 (722)
Q Consensus 475 ~~I~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l 554 (722)
.+.......++++++++|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++...+|++.. +..+
T Consensus 29 ~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~~ 106 (161)
T 3idb_B 29 TDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGNY 106 (161)
T ss_dssp CHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EEEE
T ss_pred CHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EEEc
Confidence 34445566789999999999999999999999999999999999999999999999999999998876788755 8999
Q ss_pred cCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHH
Q 004940 555 KAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 612 (722)
Q Consensus 555 ~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~ 612 (722)
++|++||+.+++ ... ++..+++|+++|+++.|++++|.+++.++|.+..
T Consensus 107 ~~G~~fGe~~~~---~~~------~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 107 DNRGSFGELALM---YNT------PRAATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp ESCCEECGGGGT---CCC------CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred CCCCEechHHHH---cCC------CcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 999999999875 222 3678999999999999999999999999997654
No 27
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.67 E-value=6.5e-16 Score=144.54 Aligned_cols=124 Identities=27% Similarity=0.361 Sum_probs=109.2
Q ss_pred HHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeec
Q 004940 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 483 ~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fG 561 (722)
.++++++++|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 567899999999999999999999999999999999999999999999999999998764 567654 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHH
Q 004940 562 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 617 (722)
Q Consensus 562 e~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~ 617 (722)
+.+++ .. .++..+++|+++|+++.|++++|.+++.++|++....++.
T Consensus 82 ~~~~~---~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~ 128 (149)
T 2pqq_A 82 ELSLF---DP------GPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRA 128 (149)
T ss_dssp GGGGT---SC------EECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHH
T ss_pred hHHhc---CC------CCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHH
Confidence 98764 21 2367799999999999999999999999999876654443
No 28
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.67 E-value=3.9e-17 Score=151.23 Aligned_cols=129 Identities=67% Similarity=1.103 Sum_probs=107.4
Q ss_pred HHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechh
Q 004940 484 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEA 563 (722)
Q Consensus 484 ~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~ 563 (722)
++++++++|..+++++++.++..++.+.|++|++|+++||.++.+|||.+|.|++....+|++.++.+..+.+|++||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 46889999999999999999999999999999999999999999999999999976555677654222399999999999
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHH
Q 004940 564 LLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 612 (722)
Q Consensus 564 ~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~ 612 (722)
++++.+++.+....++++++++|+++|+++.|++++|.+++.++|++++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 8632344433222234678999999999999999999999999996643
No 29
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.67 E-value=1.2e-15 Score=157.87 Aligned_cols=163 Identities=17% Similarity=0.208 Sum_probs=128.8
Q ss_pred cCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEe-cCCeeeEeeeEEecCCCeechhhhhhhcCC
Q 004940 493 EKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDP 571 (722)
Q Consensus 493 ~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~ 571 (722)
..+++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +.++++|++||+..++..
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~~~~--- 129 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFEE--- 129 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTTTST---
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHHhCC---
Confidence 4589999999999999999999999999999999999999999999876 4677755 899999999999987521
Q ss_pred CCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004940 572 QSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQ 651 (722)
Q Consensus 572 ~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r~~~~~~~ 651 (722)
.+++..+++|+++|+++.|++++|.+++.++|++...+++.+. .......++.......
T Consensus 130 -----~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~----------------~~l~~~~~~~~~l~~~ 188 (260)
T 3kcc_A 130 -----GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMA----------------RRLQVTSEKVGNLAFL 188 (260)
T ss_dssp -----TCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHH----------------HHHHHHHHHHHHHHHC
T ss_pred -----CCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHH----------------HHHHHHHHHHHHHhcC
Confidence 1136789999999999999999999999999987665444332 2334455666777778
Q ss_pred HHHHHHHHHHhh---cc-------cccccchhHHHHhHHH
Q 004940 652 EAEDRLQDALAT---EA-------GALTSLGATMYASKFA 681 (722)
Q Consensus 652 ~aeery~~~~~~---~p-------~~~~~vp~~~iASr~a 681 (722)
++++|+..++.. .+ .+..++++++||+.+.
T Consensus 189 ~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG 228 (260)
T 3kcc_A 189 LVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVG 228 (260)
T ss_dssp CHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhC
Confidence 899998776543 21 2345789999999764
No 30
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.65 E-value=1.6e-15 Score=142.85 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=109.1
Q ss_pred HHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeec
Q 004940 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 483 ~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fG 561 (722)
.++++++++|..+++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 467899999999999999999999999999999999999999999999999999998654 466644 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 004940 562 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFR 620 (722)
Q Consensus 562 e~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r 620 (722)
+..++ ... +++..+++|+++|+++.|++++|.+++.++|++...+++.+.+
T Consensus 89 ~~~~~---~~~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~ 139 (154)
T 2z69_A 89 EAMMF---MDT-----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 139 (154)
T ss_dssp GGGGG---SSC-----SBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHhhc---cCC-----CCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHH
Confidence 99875 211 1257799999999999999999999999999988776666544
No 31
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.63 E-value=2e-15 Score=154.86 Aligned_cols=167 Identities=9% Similarity=0.066 Sum_probs=134.2
Q ss_pred HhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEe-cCCeeeEeeeEEecCCCeechh
Q 004940 485 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEA 563 (722)
Q Consensus 485 ~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~ 563 (722)
++.++..+..+++++++.+...++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +.++++|++||+
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~- 86 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK- 86 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC-
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee-
Confidence 344445558999999999999999999999999999999999999999999999875 4677755 899999999999
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 004940 564 LLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSK 643 (722)
Q Consensus 564 ~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~ 643 (722)
++ .+ . +..+++|+++|+++.|++++|.+++.++|++....++.+.+ ......+
T Consensus 87 -~l---~~------~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~----------------~l~~~~~ 139 (250)
T 3e6c_C 87 -LY---PT------G-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLT----------------KVAYYAR 139 (250)
T ss_dssp -CS---CC------S-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHH----------------HHHHHHH
T ss_pred -ec---CC------C-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHH
Confidence 32 21 2 57799999999999999999999999999877655544332 3334556
Q ss_pred HHHHHHHHHHHHHHHHHHhh----cc-------cccccchhHHHHhHHH
Q 004940 644 KKLAQSLQEAEDRLQDALAT----EA-------GALTSLGATMYASKFA 681 (722)
Q Consensus 644 r~~~~~~~~aeery~~~~~~----~p-------~~~~~vp~~~iASr~a 681 (722)
+.......++++|+..++.. +| .+..++++++||+.+.
T Consensus 140 ~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG 188 (250)
T 3e6c_C 140 QVAEMNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITG 188 (250)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhC
Confidence 66667778889998777643 33 2467889999999874
No 32
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.61 E-value=5.7e-15 Score=139.83 Aligned_cols=118 Identities=17% Similarity=0.235 Sum_probs=104.1
Q ss_pred HHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCe
Q 004940 480 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDF 559 (722)
Q Consensus 480 ~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~ 559 (722)
....++++++++|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++. +|+. +..+.+|++
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~~----~~~~~~G~~ 107 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW----ATSVGEGGS 107 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTEE----EEEECTTCE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCEE----EEEecCCCE
Confidence 4456789999999999999999999999999999999999999999999999999999986 4443 688999999
Q ss_pred echhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHH
Q 004940 560 CGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 612 (722)
Q Consensus 560 fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~ 612 (722)
||+.+++. .. ++.++++|+++|+++.|++++|.+++.++|.+..
T Consensus 108 fGe~~~~~-~~--------~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 108 FGELALIY-GT--------PRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp ECCHHHHH-CC--------CCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred eeehHhhc-CC--------CcceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 99998852 22 2577999999999999999999999999996544
No 33
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.60 E-value=6.4e-15 Score=136.23 Aligned_cols=121 Identities=28% Similarity=0.430 Sum_probs=106.3
Q ss_pred HHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeech
Q 004940 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 562 (722)
Q Consensus 483 ~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe 562 (722)
.++++++++|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++..+ + ..+++|++||+
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G~ 81 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGE 81 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEECH
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEeee
Confidence 568999999999999999999999999999999999999999999999999999987543 2 36899999999
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 004940 563 ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFR 620 (722)
Q Consensus 563 ~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r 620 (722)
.+++. .. ++..+++|+++|+++.|++++|.+++.++|++....++.+.+
T Consensus 82 ~~~~~-~~--------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 130 (138)
T 1vp6_A 82 MALIS-GE--------PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130 (138)
T ss_dssp HHHHH-CC--------CCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHhcc-CC--------CceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 97752 11 256799999999999999999999999999888766665554
No 34
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.59 E-value=2.6e-14 Score=146.03 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=125.4
Q ss_pred HHHHHHHHhcce---EEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeechhhhhhhcCCC
Q 004940 497 DQLLDAMCDHLK---PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWALDPQ 572 (722)
Q Consensus 497 ~~~l~~l~~~l~---~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~ 572 (722)
+++++.+..... .+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++++|++||+.+++ ...
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~~---~~~ 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSLL---TGN 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHHH---SSC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHHh---CCC
Confidence 678888888888 9999999999999999999999999999998754 677755 8999999999998874 221
Q ss_pred CCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004940 573 SSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQE 652 (722)
Q Consensus 573 ~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r~~~~~~~~ 652 (722)
+. ++..+++|+++|+++.|++++|.+++.++|++....++.+.+ ......++.......+
T Consensus 105 ~~----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~----------------~l~~~~~~~~~l~~~~ 164 (243)
T 3la7_A 105 KS----DRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS----------------RILQTEMMIETLAHRD 164 (243)
T ss_dssp CS----BCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHHHHHHHHHHCSS
T ss_pred CC----cceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHHHhcCC
Confidence 11 135789999999999999999999999999877655443322 2333445555666677
Q ss_pred HHHHHHHHHhhc-----------ccccccchhHHHHhHHH
Q 004940 653 AEDRLQDALATE-----------AGALTSLGATMYASKFA 681 (722)
Q Consensus 653 aeery~~~~~~~-----------p~~~~~vp~~~iASr~a 681 (722)
+++|+..++... +.+..++++++||+.+.
T Consensus 165 ~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG 204 (243)
T 3la7_A 165 MGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIG 204 (243)
T ss_dssp HHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHC
Confidence 888887766542 24567899999998874
No 35
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.58 E-value=1.4e-14 Score=152.50 Aligned_cols=134 Identities=17% Similarity=0.298 Sum_probs=118.2
Q ss_pred HHHhhCChhHHHHHHHHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecC
Q 004940 464 GLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYG 543 (722)
Q Consensus 464 ~ll~~Lp~~Lr~~I~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~ 543 (722)
....++|+..|.+...++..++++++++|.++++++++.++..++.+.|++|++|+++||.++.+|||++|.|+++. +
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~ 96 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--E 96 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--T
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--C
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999854 3
Q ss_pred CeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHH
Q 004940 544 GRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 612 (722)
Q Consensus 544 g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~ 612 (722)
|.. +..+.+|++|||.+++. + .+++++++|.++|+++.|++++|+.++.++|....
T Consensus 97 g~~----~~~~~~G~~fGe~~ll~---~------~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~ 152 (299)
T 3shr_A 97 GVK----LCTMGPGKVFGELAILY---N------CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKH 152 (299)
T ss_dssp TEE----EEEECTTCEESCSGGGT---T------TBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CEE----EEEeCCCCeeeHhHHhc---C------CCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHH
Confidence 432 78999999999998752 1 23688999999999999999999999999985544
No 36
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.56 E-value=7.2e-14 Score=142.22 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=123.6
Q ss_pred cCCCHHHHHHHHh--cceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEe-cCCeeeEeeeEEecCCCeechhhhhhhc
Q 004940 493 EKMDDQLLDAMCD--HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWAL 569 (722)
Q Consensus 493 ~~ls~~~l~~l~~--~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~~ 569 (722)
.+++++++..++. .++.+.|++|++|+++||+++++|||.+|.|+++.. .+|++.+ +.++ +|++||+..++.
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~~~-- 76 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGFID-- 76 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBCTT--
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhhhc--
Confidence 3688999999885 599999999999999999999999999999999875 4677755 7888 999999998742
Q ss_pred CCCCCCCCCCcccEEEEc-ccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 004940 570 DPQSSSNRPLSTRTVQAL-TEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQ 648 (722)
Q Consensus 570 ~~~~~~~~~~~~~ti~Al-e~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r~~~~ 648 (722)
..+ +++..+++|+ ++|+++.|++++|.+++.++|++....++.+.+ ......++....
T Consensus 77 -~~~----~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~~~~~~~~~ 135 (238)
T 2bgc_A 77 -TET----SVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQK----------------QVSYSLAKFNDF 135 (238)
T ss_dssp -TCC----BSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHHH
T ss_pred -CCC----cCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHHH
Confidence 111 0024578888 599999999999999999999887765554432 233345566667
Q ss_pred HHHHHHHHHHHHHhh----c----c---cccc-cchhHHHHhHH
Q 004940 649 SLQEAEDRLQDALAT----E----A---GALT-SLGATMYASKF 680 (722)
Q Consensus 649 ~~~~aeery~~~~~~----~----p---~~~~-~vp~~~iASr~ 680 (722)
...++++|+..++.. + | .+.. .+++++||+.+
T Consensus 136 ~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~l 179 (238)
T 2bgc_A 136 SINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSS 179 (238)
T ss_dssp HTTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHT
T ss_pred HccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHh
Confidence 778888988877753 1 2 2334 78999999855
No 37
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.55 E-value=4.4e-14 Score=151.15 Aligned_cols=127 Identities=14% Similarity=0.205 Sum_probs=111.4
Q ss_pred HHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeec
Q 004940 483 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 483 ~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fG 561 (722)
.++++++|+|.++++++++.++..++.+.|++|++|+++||+++++|||.+|.|+++..+ +|++ + +..+.+|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~--~~~~~~G~~fG 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-I--IARALPGMIVG 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-E--EEEECTTCEES
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-E--EEEecCCCEee
Confidence 478899999999999999999999999999999999999999999999999999998765 4554 3 78999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 004940 562 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFH 622 (722)
Q Consensus 562 e~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~y 622 (722)
+.+++. .. +++.+++|+++|+++.|++++|.+++ ++|.+..++++.+.+..
T Consensus 89 e~~l~~-~~--------~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~ 139 (333)
T 4ava_A 89 EIALLR-DS--------PRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRL 139 (333)
T ss_dssp HHHHHH-TC--------BCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHH
T ss_pred HHHhcC-CC--------CceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHH
Confidence 998752 12 36789999999999999999999999 99998877766655443
No 38
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.51 E-value=5.1e-14 Score=148.27 Aligned_cols=128 Identities=22% Similarity=0.387 Sum_probs=111.7
Q ss_pred HHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec--CCeeeEeeeEEecCC
Q 004940 480 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY--GGRTGFFNAVYLKAG 557 (722)
Q Consensus 480 ~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~--~g~e~~~~~~~l~~G 557 (722)
.....+++++++|..++++++..++..++.+.|++|++|+++||.++.+|+|.+|.|+++..+ +|++.. +..+++|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCC
Confidence 345678889999999999999999999999999999999999999999999999999998865 566644 8999999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHH
Q 004940 558 DFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 618 (722)
Q Consensus 558 d~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~ 618 (722)
++|||.+++ .. .+++++++|.++|+++.|++++|.+++.++|++..+.++.+
T Consensus 231 ~~fGe~~ll---~~------~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l 282 (299)
T 3shr_A 231 DWFGEKALQ---GE------DVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDA 282 (299)
T ss_dssp CEECGGGGS---SS------EECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CEeChHHHh---CC------CCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHH
Confidence 999999874 22 23678999999999999999999999999997766555443
No 39
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.51 E-value=8.9e-15 Score=135.01 Aligned_cols=124 Identities=12% Similarity=0.226 Sum_probs=103.2
Q ss_pred ChhHHHHHHHHHhHHHhccCccccCCCHHHHHHHHhcceEEEeC-CCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeE
Q 004940 470 PKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYT-EKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGF 548 (722)
Q Consensus 470 p~~Lr~~I~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~-kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~ 548 (722)
||+.|.+.......++++++++|..+++++++.++..++.+.|+ +|++|+++|+.++.+|||.+|.|+++. .+|++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE--
Confidence 34444444444556788999999999999999999999999999 999999999999999999999999986 44443
Q ss_pred eeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEE-EEcccceEEEecHHHHHHHHHHhH
Q 004940 549 FNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTV-QALTEVEAFSLMADDLKSVASQFR 608 (722)
Q Consensus 549 ~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti-~Ale~~ell~L~~~df~~L~~~~P 608 (722)
..+.+|++||+.+++ .. .++..++ +|+++|+++.|++++|.+++.+++
T Consensus 79 ---~~l~~G~~fG~~~~~---~~------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPTL---DK------QYMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSSS---CC------EECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHhc---CC------CcceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 458899999998864 22 2256688 999999999999999999988755
No 40
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.50 E-value=7.8e-14 Score=132.19 Aligned_cols=63 Identities=10% Similarity=0.309 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004940 358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLE 420 (722)
Q Consensus 358 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~ 420 (722)
..|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+++.+.+...+.+
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~ 145 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERR 145 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC---
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999987765443
No 41
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.49 E-value=4e-13 Score=140.60 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=109.4
Q ss_pred HHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCC
Q 004940 479 RHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGD 558 (722)
Q Consensus 479 ~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd 558 (722)
.+...++++++++|.++++++++.++..++.+.|++|++|+++||.++.+|+|++|.|+++. +|.. +..+.+|+
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~~----~~~l~~G~ 107 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW----ATSVGEGG 107 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTEE----EEEECTTC
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCeE----EEEcCCCC
Confidence 34557889999999999999999999999999999999999999999999999999999987 4432 78999999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 004940 559 FCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAF 619 (722)
Q Consensus 559 ~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~ 619 (722)
+||+.+++ .+ .++.++++|.++|+++.|++++|..++.++|.+..+.+....
T Consensus 108 ~fGe~~l~---~~------~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 159 (291)
T 2qcs_B 108 SFGELALI---YG------TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFL 159 (291)
T ss_dssp EECGGGGT---CC------CBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHh---cC------CCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHH
Confidence 99998874 22 236889999999999999999999999999987665554443
No 42
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.49 E-value=3.1e-13 Score=141.44 Aligned_cols=127 Identities=20% Similarity=0.282 Sum_probs=108.9
Q ss_pred HhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CC-eeeEeeeEEecCCC
Q 004940 481 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GG-RTGFFNAVYLKAGD 558 (722)
Q Consensus 481 l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g-~e~~~~~~~l~~Gd 558 (722)
+...+++++++|..++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++... +| ++. .+..+++|+
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~--~~~~l~~G~ 231 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFV--EVGRLGPSD 231 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEE--EEEEECTTC
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccE--EEEEeCCCC
Confidence 34567788999999999999999999999999999999999999999999999999998654 33 343 379999999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHH
Q 004940 559 FCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 618 (722)
Q Consensus 559 ~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~ 618 (722)
+|||.+++ .. .+++++++|.++|+++.|++++|.+++.++|++..+.++..
T Consensus 232 ~fGe~~ll---~~------~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~ 282 (291)
T 2qcs_B 232 YFGEIALL---MN------RPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY 282 (291)
T ss_dssp EECSGGGT---CC------CCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHH
T ss_pred EecHHHHc---CC------CCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHH
Confidence 99999874 22 23688999999999999999999999999998776655543
No 43
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.48 E-value=2.1e-13 Score=138.65 Aligned_cols=119 Identities=21% Similarity=0.232 Sum_probs=105.5
Q ss_pred HHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCe
Q 004940 480 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDF 559 (722)
Q Consensus 480 ~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~ 559 (722)
.+...+++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++ ++..+++|++
T Consensus 121 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~-----~~~~l~~g~~ 195 (246)
T 3of1_A 121 LMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG-----VINKLKDHDY 195 (246)
T ss_dssp HHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE-----EEEEEETTCE
T ss_pred HHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc-----eEEEcCCCCc
Confidence 34566788899999999999999999999999999999999999999999999999999876554 2789999999
Q ss_pred echhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHH
Q 004940 560 CGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 612 (722)
Q Consensus 560 fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~ 612 (722)
|||.+++. .. +++++++|.++|+++.|++++|.+++..+|++..
T Consensus 196 fGe~~~~~-~~--------~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 196 FGEVALLN-DL--------PRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp ECHHHHHH-TC--------BCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred ccHHHHhC-CC--------CcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 99998852 22 3678999999999999999999999999997644
No 44
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.48 E-value=2.8e-13 Score=149.81 Aligned_cols=125 Identities=14% Similarity=0.186 Sum_probs=111.2
Q ss_pred HHHHHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEec
Q 004940 476 DIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLK 555 (722)
Q Consensus 476 ~I~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~ 555 (722)
+-..+...++++++++|.+++++++..++..++.+.|++|++|+++||.++.+|||++|.|+++...+|++.. +..+.
T Consensus 137 ~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~~l~ 214 (416)
T 3tnp_B 137 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGNYD 214 (416)
T ss_dssp HHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EEEEE
T ss_pred HHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EEEec
Confidence 3345566789999999999999999999999999999999999999999999999999999998877777755 89999
Q ss_pred CCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHH
Q 004940 556 AGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLH 611 (722)
Q Consensus 556 ~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~ 611 (722)
+|++|||.+++. . .+++++++|+++|+++.|++++|..++.++|...
T Consensus 215 ~G~~fGe~all~---~------~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~ 261 (416)
T 3tnp_B 215 NRGSFGELALMY---N------TPKAATITATSPGALWGLDRVTFRRIIVKNNAKK 261 (416)
T ss_dssp SCCEECGGGGTS---C------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCEEeeHHHhc---C------CCcccEEEEccCeEEEEEeehhhhhhhhcchhHH
Confidence 999999998752 2 2368899999999999999999999999988654
No 45
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.5e-13 Score=139.65 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=102.8
Q ss_pred hHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 482 CWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 482 ~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
..++++++++|.++++++++.++..++.+.|++|++|+++||+++++|+|.+|.|+++. +|+. +..+++|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCEE----EEecCCCCeee
Confidence 35788999999999999999999999999999999999999999999999999999875 3433 68999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHH
Q 004940 562 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 612 (722)
Q Consensus 562 e~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~ 612 (722)
+.+++. .. +++++++|.++|+++.|++++|..++.++|....
T Consensus 79 e~~l~~-~~--------~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 120 (246)
T 3of1_A 79 ELALMY-NS--------PRAATVVATSDCLLWALDRLTFRKILLGSSFKKR 120 (246)
T ss_dssp HHHHHH-TC--------CCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHH
T ss_pred hhHHhc-CC--------CCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHH
Confidence 998753 22 2678999999999999999999999999885544
No 46
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.45 E-value=5.4e-13 Score=131.34 Aligned_cols=138 Identities=16% Similarity=0.127 Sum_probs=107.6
Q ss_pred EEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc
Q 004940 510 VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALT 588 (722)
Q Consensus 510 ~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale 588 (722)
+.|++|++|+++|++++++|||.+|.|+++..+ +|++.+ +.++++|++||+ +++ +.. ++..+++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~~---~~~------~~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EAL---EGK------AYRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GGG---TCS------BCSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hhh---CCC------CceeEEEECC
Confidence 579999999999999999999999999998754 677755 899999999999 764 222 3578999999
Q ss_pred cceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----c
Q 004940 589 EVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRLQDALAT----E 664 (722)
Q Consensus 589 ~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r~~~~~~~~aeery~~~~~~----~ 664 (722)
+|+++.|++++|. |++....++.+. .......++.......++++|+..++.+ +
T Consensus 70 ~~~v~~i~~~~~~------p~~~~~~~~~l~----------------~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~ 127 (195)
T 3b02_A 70 EAVVQGLEPRAMD------HEALHRVARNLA----------------RQMRRVQAYEAHLQTGELRARIARYLLFLADTP 127 (195)
T ss_dssp SEEEEEECGGGCC------HHHHHHHHHHHH----------------HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTST
T ss_pred cEEEEEEcHHHcC------HHHHHHHHHHHH----------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 9999999999998 766554443322 2334455666677778899999887765 3
Q ss_pred cc------ccccchhHHHHhHHH
Q 004940 665 AG------ALTSLGATMYASKFA 681 (722)
Q Consensus 665 p~------~~~~vp~~~iASr~a 681 (722)
+. +...+++++||+.+.
T Consensus 128 ~~~~~~~~~~~~~t~~~lA~~lg 150 (195)
T 3b02_A 128 LSARDRQGIYVTVSHEEIADATA 150 (195)
T ss_dssp TEEEETTEEEEECCHHHHHHTTT
T ss_pred CCCCCCCeeeccCCHHHHHHHhC
Confidence 33 567789999998763
No 47
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=149.34 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=110.6
Q ss_pred HHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec--CCeeeEeeeEEecCC
Q 004940 480 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY--GGRTGFFNAVYLKAG 557 (722)
Q Consensus 480 ~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~--~g~e~~~~~~~l~~G 557 (722)
.++..+++++++|..++++++..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ ++++. ++..+++|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~--~v~~l~~G 321 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYV--EVGRLGPS 321 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCC--EEEEECTT
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceE--EEEEeCCC
Confidence 445677888999999999999999999999999999999999999999999999999998754 23332 37899999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 004940 558 DFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAF 619 (722)
Q Consensus 558 d~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~ 619 (722)
++|||.+++ .. .+++++++|+++|+++.|++++|.+++..+|++..+.+++.-
T Consensus 322 d~fGe~all---~~------~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~ 374 (381)
T 4din_B 322 DYFGEIALL---LN------RPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYN 374 (381)
T ss_dssp CEECTTGGG---SC------CBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHH
T ss_pred CEechHHHh---CC------CCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999985 22 236889999999999999999999999999987665555443
No 48
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.43 E-value=7.2e-13 Score=144.86 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=106.5
Q ss_pred HHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCC
Q 004940 479 RHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGD 558 (722)
Q Consensus 479 ~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd 558 (722)
.....++++++++|.+++++++..++..++.+.|++|++|+++||.++++|+|.+|.|+++. +|+. +..+++|+
T Consensus 125 ~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~~----v~~l~~G~ 198 (381)
T 4din_B 125 MTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGEW----VTNISEGG 198 (381)
T ss_dssp HHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTEE----EEEEESSC
T ss_pred HHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCeE----eeeCCCCC
Confidence 34557889999999999999999999999999999999999999999999999999999986 3443 67899999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHH
Q 004940 559 FCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQ 614 (722)
Q Consensus 559 ~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~ 614 (722)
+|||.+++. . .++.++++|+++|+++.|++++|..++.++|.+..+.
T Consensus 199 ~fGe~all~---~------~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~ 245 (381)
T 4din_B 199 SFGELALIY---G------TPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKM 245 (381)
T ss_dssp CBCGGGGTS---C------CBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred EEEchHHhc---C------CCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHH
Confidence 999998752 2 2368899999999999999999999999999665433
No 49
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.42 E-value=2.1e-12 Score=121.86 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----hhHHHHHHHHHHHHH
Q 004940 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQK------YLES----TTVRLEEMRVKRQDA 429 (722)
Q Consensus 360 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~------~l~~----~~~~~~e~~~k~~~~ 429 (722)
|..|+||++.|+||+||||++|.+..+++++++.+++|++++++++++++. +.+. .+.+..+.+.+++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999886 3332 244555666778899
Q ss_pred HHHHHhCCCCHHHHHH
Q 004940 430 EQWMSHRMLPENLRDR 445 (722)
Q Consensus 430 ~~~m~~~~lp~~L~~r 445 (722)
+++++.++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999876
No 50
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.41 E-value=1e-12 Score=147.22 Aligned_cols=139 Identities=18% Similarity=0.179 Sum_probs=118.9
Q ss_pred hCChhHHHHHHHHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCee
Q 004940 468 NLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRT 546 (722)
Q Consensus 468 ~Lp~~Lr~~I~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e 546 (722)
..|+..|.+.......+.++++++|.++++++++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|++
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~ 105 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ 105 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC
Confidence 357777888888888899999999999999999999999999999999999999999999999999999998754 4432
Q ss_pred eEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHH
Q 004940 547 GFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQ 616 (722)
Q Consensus 547 ~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~ 616 (722)
....+..+++|++||+.+ +. .. +++++++|+++|+++.|++++|..++.++|++...+++
T Consensus 106 ~~~~~~~~~~G~~fGe~~-l~-~~--------~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~ 165 (469)
T 1o7f_A 106 DAVTICTLGIGTAFGESI-LD-NT--------PRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLA 165 (469)
T ss_dssp GCEEEEEECTTCEECGGG-GG-TC--------BCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSC
T ss_pred cceEEEEccCCCCcchhh-hC-CC--------CccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHH
Confidence 112389999999999987 42 22 36789999999999999999999999999986654443
No 51
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.41 E-value=4.1e-13 Score=148.48 Aligned_cols=123 Identities=12% Similarity=0.219 Sum_probs=105.4
Q ss_pred HhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecC-------CeeeEeeeEE
Q 004940 481 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYG-------GRTGFFNAVY 553 (722)
Q Consensus 481 l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~-------g~e~~~~~~~ 553 (722)
++..+++++++|..++++++..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+. |++.. +..
T Consensus 264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~--l~~ 341 (416)
T 3tnp_B 264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE--IAR 341 (416)
T ss_dssp SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE--EEE
T ss_pred HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE--EEE
Confidence 456678889999999999999999999999999999999999999999999999999986543 55544 899
Q ss_pred ecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHHHHH
Q 004940 554 LKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQ 614 (722)
Q Consensus 554 l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~ 614 (722)
+++|++|||.+++ .. .+++++++|+++|+++.|++++|.+++..+|++..+.
T Consensus 342 l~~G~~fGE~all---~~------~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~ 393 (416)
T 3tnp_B 342 CFRGQYFGELALV---TN------KPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRN 393 (416)
T ss_dssp ECTTCEESGGGGT---CC------SCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC
T ss_pred eCCCCEecHHHHh---CC------CCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHH
Confidence 9999999999885 22 2368899999999999999999999999999765443
No 52
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.40 E-value=3.3e-13 Score=125.49 Aligned_cols=92 Identities=7% Similarity=0.184 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCC
Q 004940 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLP 439 (722)
Q Consensus 360 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp 439 (722)
|..|+||++.|+|||||||++|.|..|++++++++++|++++|+++|.+++.+.+...+..+.+...+..+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 67799999999999999999999999999999999999999999999999998765544433332222223333445566
Q ss_pred HHHHHHHHHHHH
Q 004940 440 ENLRDRIRRYEQ 451 (722)
Q Consensus 440 ~~L~~rV~~y~~ 451 (722)
++....+++|.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 53
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.39 E-value=1.3e-12 Score=129.30 Aligned_cols=143 Identities=16% Similarity=0.139 Sum_probs=108.6
Q ss_pred HhcceEEEeCCCcEEEcCCCCc--CeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCc
Q 004940 504 CDHLKPVLYTEKSFIVREGDPV--EEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLS 580 (722)
Q Consensus 504 ~~~l~~~~~~kge~Ii~eGd~~--~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~ 580 (722)
...++.+.|++|++|+++|+++ +++|||.+|.|+++..+ +|++.+ +.++++|++||+ +++. .. ++
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~l~-~~--------~~ 69 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EALF-GQ--------ER 69 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HHHH-TC--------CB
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hhcC-CC--------Cc
Confidence 4567889999999999999999 99999999999998654 677755 899999999999 6542 22 25
Q ss_pred ccEEEEcccceEEEecHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004940 581 TRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRLQDA 660 (722)
Q Consensus 581 ~~ti~Ale~~ell~L~~~df~~L~~~~P~l~~~~l~~~~r~ys~~~~~~~~~~~q~~~~~~~~r~~~~~~~~aeery~~~ 660 (722)
..+++|+++|+++.| +++|. |++....++.+. .......++.......++++|+..+
T Consensus 70 ~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~----------------~~l~~~~~~~~~~~~~~~~~Rl~~~ 126 (202)
T 2zcw_A 70 IYFAEAATDVRLEPL-PENPD------PELLKDLAQHLS----------------QGLAEAYRRIERLATQRLKNRMAAA 126 (202)
T ss_dssp CSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHH----------------HHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 779999999999999 98886 665554433322 2334456666777788899999887
Q ss_pred Hhhc----------ccccccchhHHHHhHHH
Q 004940 661 LATE----------AGALTSLGATMYASKFA 681 (722)
Q Consensus 661 ~~~~----------p~~~~~vp~~~iASr~a 681 (722)
+.+. +.+...+++++||+.+.
T Consensus 127 L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg 157 (202)
T 2zcw_A 127 LLELSETPLAHEEEGKVVLKATHDELAAAVG 157 (202)
T ss_dssp HHHHTTSTTEEEETTEEEEECCHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCcEEccCCCHHHHHHHhC
Confidence 7653 24667899999998764
No 54
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.37 E-value=2.7e-12 Score=116.95 Aligned_cols=60 Identities=10% Similarity=0.310 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 004940 358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTV 417 (722)
Q Consensus 358 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~ 417 (722)
..|..|+||++.|+||+||||++|.+..+++++++.+++|++++++.+|.+++.+++...
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999999999999999999999999999999999999999986543
No 55
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.34 E-value=3.8e-12 Score=142.61 Aligned_cols=121 Identities=9% Similarity=0.159 Sum_probs=102.4
Q ss_pred HHhHHHhccCccccCCCHHHHHHHHhcceE-EEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCC
Q 004940 480 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKP-VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGD 558 (722)
Q Consensus 480 ~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~-~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd 558 (722)
....+.++++++|.+++++.+..++..+.. +.|++|++|+++||.++.+|||.+|.|+++..+. . ++..+.+|+
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~--~---~~~~l~~G~ 407 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK--G---VVCTLHEGD 407 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT--E---EEEEEETTC
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC--e---eEEEecCCC
Confidence 344677999999999999999999999985 4999999999999999999999999999987432 2 278999999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEcc-cceEEEecHHHHHHHHHHhHHHHHHH
Q 004940 559 FCGEALLTWALDPQSSSNRPLSTRTVQALT-EVEAFSLMADDLKSVASQFRRLHSKQ 614 (722)
Q Consensus 559 ~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale-~~ell~L~~~df~~L~~~~P~l~~~~ 614 (722)
+||+.+++ .. .+++++++|++ +|+++.|++++|.+++.++|++..++
T Consensus 408 ~fGe~~ll---~~------~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l 455 (469)
T 1o7f_A 408 DFGKLALV---ND------APRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 455 (469)
T ss_dssp EECGGGGT---CC------SCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC----
T ss_pred EEEEehhh---cC------CCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHH
Confidence 99999874 22 23688999999 69999999999999999999765543
No 56
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.24 E-value=3.4e-11 Score=112.35 Aligned_cols=90 Identities=13% Similarity=0.298 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhC
Q 004940 358 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRL-EEMRVKRQDAEQWMSHR 436 (722)
Q Consensus 358 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~-~e~~~k~~~~~~~m~~~ 436 (722)
..|..|+||++.|+|||||||++|.+..+++++++.+++|+++++++++.+++.+.+...+. +++..+.+.....+-.+
T Consensus 39 ~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (139)
T 3eff_K 39 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTR 118 (139)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999998886544332 33333333323222222
Q ss_pred CCCHHHHHHHHH
Q 004940 437 MLPENLRDRIRR 448 (722)
Q Consensus 437 ~lp~~L~~rV~~ 448 (722)
++ +++.+++.+
T Consensus 119 ~~-~~l~~~l~~ 129 (139)
T 3eff_K 119 TT-RALHERFDR 129 (139)
T ss_dssp HH-HHHHHHHHH
T ss_pred HH-HHHHHHHHH
Confidence 22 444444444
No 57
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.23 E-value=2.6e-11 Score=141.97 Aligned_cols=133 Identities=12% Similarity=0.185 Sum_probs=110.6
Q ss_pred HHHHhhCChhHHHHHHHHHhHHHhccCccccCCCHHHHHHHHhcce-EEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEe
Q 004940 463 EGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLK-PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT 541 (722)
Q Consensus 463 ~~ll~~Lp~~Lr~~I~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~-~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~ 541 (722)
..++.. |+..|.+.......+.++++++|.++++++++.++..+. .+.|++|++|+++||.++.+|||++|.|+++..
T Consensus 12 r~iL~k-~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRK-PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHS-CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcC-ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 345543 444455444555578899999999999999999999998 789999999999999999999999999999875
Q ss_pred cCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc-cceEEEecHHHHHHHHHHhHHH
Q 004940 542 YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALT-EVEAFSLMADDLKSVASQFRRL 610 (722)
Q Consensus 542 ~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale-~~ell~L~~~df~~L~~~~P~l 610 (722)
+ + . ++.++++|++||+.+++. .. ++.++++|++ +|+++.|++++|.+++.++|.+
T Consensus 91 g--~-~--il~~l~~Gd~fGe~al~~-~~--------~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 G--K-G--VVCTLHEGDDFGKLALVN-DA--------PRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp T--T-E--EEEEEETTCEECHHHHHH-TC--------BCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred C--C-E--EEEEeCCCCEeehHHHhC-CC--------CceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 2 2 2 379999999999988752 22 2577999999 5999999999999999998875
No 58
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.22 E-value=5e-11 Score=146.05 Aligned_cols=135 Identities=19% Similarity=0.185 Sum_probs=109.3
Q ss_pred HHHhhCChhHHHHHHHHHhHHHhccCccccCCCHHHHHHHHhcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-
Q 004940 464 GLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY- 542 (722)
Q Consensus 464 ~ll~~Lp~~Lr~~I~~~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~- 542 (722)
..|+.-| .-|.+--.++-...|+++.+|.++++.++..||..+..+.|++|++|+++||.++.+|+|++|.|.++..+
T Consensus 23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~ 101 (999)
T 4f7z_A 23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (999)
T ss_dssp HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence 3444433 33433333444577899999999999999999999999999999999999999999999999999998743
Q ss_pred --CCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecHHHHHHHHHHhHHHH
Q 004940 543 --GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLH 611 (722)
Q Consensus 543 --~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~~df~~L~~~~P~l~ 611 (722)
++.+. .+..+++|+.||| +++. . .+|++|++|.++|++++|++++|+.++.++|+..
T Consensus 102 ~~~~~~~--~v~~l~~G~sFGE-all~-n--------~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 102 SSHQDAV--TICTLGIGTAFGE-SILD-N--------TPRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp SCTTSCE--EEEEEETTCEECG-GGGG-T--------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCCCce--eEEEecCCcchhh-hhcc-C--------CCcceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 22332 3789999999999 4431 1 2378999999999999999999999999999743
No 59
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.14 E-value=2.2e-10 Score=119.94 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhcccCCC-Ccc-CCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 004940 358 KKFFYCFWWGLRNLSSLGQN-LKT-STFVGE----VFFAIFISISGLVLFALLIGNMQKYLESTTV 417 (722)
Q Consensus 358 ~~Y~~slyw~l~tlstvG~g-d~~-~~~~~E----~if~i~~~i~G~~lfa~lig~~~~~l~~~~~ 417 (722)
..+..|+||+++++||+||| |+. |.+... ..|++++++.|.++.+..+|.+.+.++....
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567999999999999999 985 665433 8899999999999999999999888875543
No 60
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.09 E-value=6.3e-10 Score=136.29 Aligned_cols=115 Identities=10% Similarity=0.185 Sum_probs=98.3
Q ss_pred HHhHHHhccCccccCCCHHHHHHHHhcceEEE-eCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCC
Q 004940 480 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVL-YTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGD 558 (722)
Q Consensus 480 ~l~~~~l~~v~lF~~ls~~~l~~l~~~l~~~~-~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd 558 (722)
+...+.+.+++.|.+++......++..+.... +++|++|++|||.++.+|||++|.|+++...++. +..+++||
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~-----v~~L~~Gd 407 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV-----VCTLHEGD 407 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE-----EEEEETTC
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc-----eEEecCCC
Confidence 33467789999999999999999999999765 5789999999999999999999999998643322 68899999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEccc-ceEEEecHHHHHHHHHHhH
Q 004940 559 FCGEALLTWALDPQSSSNRPLSTRTVQALTE-VEAFSLMADDLKSVASQFR 608 (722)
Q Consensus 559 ~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~-~ell~L~~~df~~L~~~~P 608 (722)
+|||.+++ . ..+|.+||+|.++ |++++++++||.+++.+-.
T Consensus 408 ~FGElALL---~------~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~e 449 (999)
T 4f7z_A 408 DFGKLALV---N------DAPRAASIVLREDNCHFLRVDKEDGNRILRDVE 449 (999)
T ss_dssp EECGGGGT---C------SCBCSSEEEESSSSEEEEEEEHHHHHHHHHHHH
T ss_pred cccchhhc---c------CCCeeEEEEEecCceEEEEeeHHHHHHHHhHHH
Confidence 99999984 2 2247889999985 9999999999999997743
No 61
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.01 E-value=2.3e-09 Score=96.17 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004940 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTT 416 (722)
Q Consensus 360 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~ 416 (722)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.++.+++.++...
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 106 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999999886544
No 62
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.96 E-value=1.9e-10 Score=101.44 Aligned_cols=59 Identities=14% Similarity=0.263 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 004940 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTV 417 (722)
Q Consensus 359 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~ 417 (722)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++++++|.+.+.+.+...
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568999999999999999999999999999999999999999999999988876543
No 63
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.94 E-value=5.2e-09 Score=91.01 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004940 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLES 414 (722)
Q Consensus 360 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~ 414 (722)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.+++++++.++..++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5669999999999999999999999999999999999999999999999988874
No 64
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.86 E-value=5.1e-09 Score=88.11 Aligned_cols=53 Identities=13% Similarity=0.384 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004940 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYL 412 (722)
Q Consensus 360 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l 412 (722)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999998875
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.81 E-value=2.8e-10 Score=109.35 Aligned_cols=62 Identities=11% Similarity=0.371 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004940 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLE 420 (722)
Q Consensus 359 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~~ 420 (722)
.|..|+||++.|+|||||||++|.+..+++++++.+++|++++++++|.+++.+.+...+..
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~ 128 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQ 128 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHH
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999999999999999999999999999999999999998886654443
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.71 E-value=3.1e-08 Score=103.89 Aligned_cols=56 Identities=9% Similarity=0.164 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004940 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLES 414 (722)
Q Consensus 359 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~ 414 (722)
.|..++||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.++.
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999988877753
No 67
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.67 E-value=1.9e-08 Score=106.57 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004940 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTT 416 (722)
Q Consensus 360 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~ 416 (722)
|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+....
T Consensus 97 ~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp THHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999998887554
No 68
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.60 E-value=1.2e-07 Score=99.04 Aligned_cols=57 Identities=19% Similarity=0.362 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004940 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLEST 415 (722)
Q Consensus 359 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~ 415 (722)
.|..|+||+++|+||+||||++|.+...++|+++.+++|+.+++++++.+++.+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999988753
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.53 E-value=2.9e-07 Score=97.27 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004940 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTT 416 (722)
Q Consensus 359 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~ 416 (722)
.|..|+||++.|+|||||||+.|.+...++++++.+++|++++|+++|.+.+.+....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999999999999999999999999998887543
No 70
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.39 E-value=1.3e-06 Score=92.29 Aligned_cols=59 Identities=17% Similarity=0.357 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcccCCCCccCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004940 360 FFYCFWWGLRNLSSLGQNLKTST--FVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVR 418 (722)
Q Consensus 360 Y~~slyw~l~tlstvG~gd~~~~--~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~~~ 418 (722)
+..+|||++.|+||+||||+.|+ +...++++++.+++|+++.|+++|.+.+-+.....+
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 34589999999999999999997 678999999999999999999999988777655443
No 71
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.27 E-value=3.1e-06 Score=96.97 Aligned_cols=54 Identities=17% Similarity=0.385 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 004940 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGN-MQKYLE 413 (722)
Q Consensus 360 Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~-~~~~l~ 413 (722)
|+.|+||++.|+||+||||++|.+..+++++++++++|++++++.++. +.+++.
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 106 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFL 106 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999998 555443
No 72
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.24 E-value=1.7e-06 Score=89.03 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004940 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLES 414 (722)
Q Consensus 359 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~ 414 (722)
.|..|+||+++|+||+||||++|.+...++|+++.+++|+.+++++++.+...+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999998876643
No 73
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.18 E-value=7.3e-07 Score=93.20 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcccCCCCccCCchhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004940 360 FFYCFWWGLRNLSSLGQNLKTSTFVGEV------FFAIFISISGLVLFALLIGNMQKYLESTTVRL 419 (722)
Q Consensus 360 Y~~slyw~l~tlstvG~gd~~~~~~~E~------if~i~~~i~G~~lfa~lig~~~~~l~~~~~~~ 419 (722)
|+.|+||++.|+|||||||++|.+..++ +++++++++|+.+++++++.+++.+.....+.
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999999999988876 59999999999999999999999887665443
No 74
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.12 E-value=6.2e-05 Score=75.69 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccccCCccccccCCcchhhHHHHHHHHHHHHHHHHHHhheeeEEecCccccCCCeee
Q 004940 94 WWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELV 173 (722)
Q Consensus 94 ~W~~~~~i~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~F~t~y~~~~s~~~~~G~lV 173 (722)
.++.++.++++.+++..-+.- .+ .+.........++.++-++|.+|+++++... |
T Consensus 13 ~f~~~i~~~I~ln~i~l~~~~-~~----------~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~-----------~--- 67 (229)
T 4dxw_A 13 IFQFTVVSIIILNAVLIGATT-YE----------LDPLFLETIHLLDYGITIFFVIEILIRFIGE-----------K--- 67 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTCC-SS----------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred hHHHHHHHHHHHHHHHHHHcc-CC----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------C---
Confidence 567777777777777655542 11 1223355677889999999999999998642 1
Q ss_pred cCHHHHHHHHHhh-hhhhhhhhccCh
Q 004940 174 DDPKAIAKRYLMS-YFIVDILAILPL 198 (722)
Q Consensus 174 ~d~~~Ia~~Yl~~-~F~iDlls~lP~ 198 (722)
-.++|.++ |-++|++.++|.
T Consensus 68 -----~~~~y~~~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 68 -----QKADFFKSGWNIFDTVIVAIS 88 (229)
T ss_dssp ------------CHHHHHHHHHHHHT
T ss_pred -----chhHHhcCCcHHHHHHHHHHH
Confidence 13578888 889998877664
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.09 E-value=7.9e-06 Score=86.53 Aligned_cols=58 Identities=19% Similarity=0.401 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcccCCCCccCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004940 359 KFFYCFWWGLRNLSSLGQNLKTST--FVGEVFFAIFISISGLVLFALLIGNMQKYLESTT 416 (722)
Q Consensus 359 ~Y~~slyw~l~tlstvG~gd~~~~--~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~~ 416 (722)
.+..+|||++.|+||+||||+.|+ +...++++.+.+++|+++.|+++|.+..-+....
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 356799999999999999999864 7889999999999999999999998877776543
No 76
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.07 E-value=2.7e-06 Score=87.54 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcccCCCCccCCchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004940 360 FFYCFWWGLRNLSSLGQNLKTSTFVG-------EVFFAIFISISGLVLFALLIGNMQKYLESTT 416 (722)
Q Consensus 360 Y~~slyw~l~tlstvG~gd~~~~~~~-------E~if~i~~~i~G~~lfa~lig~~~~~l~~~~ 416 (722)
|+.|+||++.|+|||||||+.|.+.. .++++++.+++|+.+++++++.+.++++...
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~ 265 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKK 265 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999875 4999999999999999999999998887543
No 77
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.91 E-value=7.9e-07 Score=95.01 Aligned_cols=55 Identities=13% Similarity=0.372 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004940 361 FYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLEST 415 (722)
Q Consensus 361 ~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~~ 415 (722)
..|+||++.|+||+||||++|.+..+++++++++++|+++++++++.+.+.+.+.
T Consensus 47 ~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 47 TVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp STTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999999999999999999999999999999999998887753
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.57 E-value=0.0002 Score=66.81 Aligned_cols=78 Identities=8% Similarity=0.113 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccccCCccccccCCcchhhHHHHHHHHHHHHHHHHHHhheeeEEecCccccCCCeee
Q 004940 94 WWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGELV 173 (722)
Q Consensus 94 ~W~~~~~i~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~F~t~y~~~~s~~~~~G~lV 173 (722)
.|+.++.++.+.++++.-+..+.+. +......+..++.++-++|.+|+++++..+ ++
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~i----------~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a---~~---------- 78 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQL----------SGEYLVRLYLVDLILVIILWADYAYRAYKS---GD---------- 78 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TC----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhh----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHC---Cc----------
Confidence 3777777777777766655532221 112244577899999999999999999765 21
Q ss_pred cCHHHHHHHHHhhhhhhhhhhccChhHH
Q 004940 174 DDPKAIAKRYLMSYFIVDILAILPLPQL 201 (722)
Q Consensus 174 ~d~~~Ia~~Yl~~~F~iDlls~lP~~~i 201 (722)
.++|+++ =++|++|++|+...
T Consensus 79 ------k~~f~~~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 79 ------PAGYVKK-TLYEIPALVPAGLL 99 (147)
T ss_dssp ------HHHHHHH-STTTHHHHCCHHHH
T ss_pred ------HHHHHHH-HHHHHHHHHHHHHH
Confidence 3578887 68999999999644
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=97.33 E-value=0.00053 Score=62.74 Aligned_cols=79 Identities=8% Similarity=0.077 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccCCccccccCCcchhhHHHHHHHHHHHHHHHHHHhheeeEEecCccccCCCee
Q 004940 93 QWWNKIFVLSCVIALSIDPLFFYMPVIDGKRKCLGLDKTLEITACVLRSFIDTFYILRIIFQFRTGFIARSSRVFGRGEL 172 (722)
Q Consensus 93 ~~W~~~~~i~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~d~~f~iDi~l~F~t~y~~~~s~~~~~G~l 172 (722)
+.++.+++++.+.+++..-+.-+ |. .+......+..++.++-++|.+|+++++.++ ++
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~-~~---------~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~~--------- 63 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYT-MQ---------LSGEYLVRLYLVDLILVIILWADYAYRAYKS---GD--------- 63 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-SC---------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-hh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC---------
Confidence 35677777777777766555521 11 1222345677899999999999999999764 11
Q ss_pred ecCHHHHHHHHHhhhhhhhhhhccChhHH
Q 004940 173 VDDPKAIAKRYLMSYFIVDILAILPLPQL 201 (722)
Q Consensus 173 V~d~~~Ia~~Yl~~~F~iDlls~lP~~~i 201 (722)
.++|++ |=++|+++++|+..-
T Consensus 64 -------~~~y~~-~niiDllailp~~~~ 84 (132)
T 1ors_C 64 -------PAGYVK-KTLYEIPALVPAGLL 84 (132)
T ss_dssp -------TTTTTT-TCGGGTGGGSCHHHH
T ss_pred -------HHHHHH-HHHHHHHHHHHHHHH
Confidence 257888 999999999998643
No 80
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=64.63 E-value=20 Score=34.98 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=52.4
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 004940 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQA 586 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~A 586 (722)
+....+.+|+.+-..-.+.+.+.+|++|.+++... |+ ...+++||++=- .+. ....+.|
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~~~~-------p~~-------~~H~~~a 97 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NN-----KKTISNGDFLEI-------TAN-------HNYSIEA 97 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SC-----EEEEETTEEEEE-------CSS-------CCEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CE-----EEEECCCCEEEE-------CCC-------CCEEEEE
Confidence 45568899999988888899999999999998653 33 357899987632 111 3558899
Q ss_pred cccceEEEe
Q 004940 587 LTEVEAFSL 595 (722)
Q Consensus 587 le~~ell~L 595 (722)
.+++.++.+
T Consensus 98 ~~~~~~l~i 106 (227)
T 3rns_A 98 RDNLKLIEI 106 (227)
T ss_dssp SSSEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999877
No 81
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=63.74 E-value=22 Score=30.42 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=46.6
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 004940 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQA 586 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~A 586 (722)
+....+++|..+-..-....++++|++|.+++.. +++ ...+++||.+--- +. ....+.+
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ip-------~~-------~~H~~~~ 96 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--DGA-----QRRLHQGDLLYLG-------AG-------AAHDVNA 96 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--TTE-----EEEECTTEEEEEC-------TT-------CCEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE--CCE-----EEEECCCCEEEEC-------CC-------CcEEEEe
Confidence 3455778898887666667899999999998765 333 3678999987422 11 2446788
Q ss_pred cccceEEE
Q 004940 587 LTEVEAFS 594 (722)
Q Consensus 587 le~~ell~ 594 (722)
.+++.++.
T Consensus 97 ~~~~~~~~ 104 (114)
T 3fjs_A 97 ITNTSLLV 104 (114)
T ss_dssp SSSEEEEE
T ss_pred CCCcEEEE
Confidence 88876544
No 82
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=60.07 E-value=8.9 Score=44.92 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcccCCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004940 359 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLES 414 (722)
Q Consensus 359 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~if~i~~~i~G~~lfa~lig~~~~~l~~ 414 (722)
....++|+++.+++..| ++..|.+...+++.++++++++++.+...+++++++..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35578999999998877 67889999999999999999999999999999999974
No 83
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=57.38 E-value=28 Score=29.37 Aligned_cols=66 Identities=9% Similarity=0.148 Sum_probs=42.3
Q ss_pred EEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc
Q 004940 509 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALT 588 (722)
Q Consensus 509 ~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale 588 (722)
...+.+|..+-.......++++|++|.+.+.. +++ ...+++||.+=-- +. ....+.+.+
T Consensus 42 ~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~i~-------~~-------~~H~~~~~~ 100 (114)
T 2ozj_A 42 LFSFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ-----KIDLVPEDVLMVP-------AH-------KIHAIAGKG 100 (114)
T ss_dssp EEEEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE-----EEEECTTCEEEEC-------TT-------CCBEEEEEE
T ss_pred EEEECCCCccccEECCCCeEEEEEeCEEEEEE--CCE-----EEEecCCCEEEEC-------CC-------CcEEEEeCC
Confidence 33456777654445567799999999998754 333 3578999976422 11 133566667
Q ss_pred cceEEEe
Q 004940 589 EVEAFSL 595 (722)
Q Consensus 589 ~~ell~L 595 (722)
++.++.+
T Consensus 101 ~~~~~~i 107 (114)
T 2ozj_A 101 RFKMLQI 107 (114)
T ss_dssp EEEEEEE
T ss_pred CcEEEEE
Confidence 7776654
No 84
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=52.64 E-value=36 Score=29.53 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=33.6
Q ss_pred eEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 508 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 508 ~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
....+.+|..+-.. ...+++++|++|.+++.. +|+ ...+++||.+-
T Consensus 43 ~~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~-----~~~l~~GD~v~ 88 (119)
T 3lwc_A 43 GYGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGE-----TVTAGPGEIVY 88 (119)
T ss_dssp EEEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 34467788765443 377899999999999865 444 35799999874
No 85
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=52.15 E-value=64 Score=26.95 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=44.8
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 004940 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQA 586 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~A 586 (722)
+....+++|..+-.--....++++|++|.+.+.. +++ ...+.+||.+=- .+. ....+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~i-------p~~-------~~H~~~~ 94 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV-----IKVLTAGDSFFV-------PPH-------VDHGAVC 94 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTCEEEE-------CTT-------CCEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE-----EEEeCCCCEEEE-------CcC-------CceeeEe
Confidence 3445678887754434456789999999998765 343 357899998632 111 2346677
Q ss_pred cccceEEEe
Q 004940 587 LTEVEAFSL 595 (722)
Q Consensus 587 le~~ell~L 595 (722)
.++++++.+
T Consensus 95 ~~~~~~l~v 103 (116)
T 2pfw_A 95 PTGGILIDT 103 (116)
T ss_dssp SSCEEEEEE
T ss_pred CCCcEEEEE
Confidence 777777666
No 86
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=51.54 E-value=50 Score=27.64 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=44.3
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 004940 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQA 586 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~A 586 (722)
+....+.+|..+-.--....++++|++|.+.+.. +|+ ...+.+||.+-- .+. ....+.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~i-------p~~-------~~H~~~~ 100 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQE-----TYRVAEGQTIVM-------PAG-------IPHALYA 100 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEE-------CTT-------SCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEEE-------CCC-------CCEEEEE
Confidence 3445677888765444456799999999998754 333 357899998742 111 2345677
Q ss_pred cccceEEEe
Q 004940 587 LTEVEAFSL 595 (722)
Q Consensus 587 le~~ell~L 595 (722)
.++++++.+
T Consensus 101 ~~~~~~~~v 109 (115)
T 1yhf_A 101 VEAFQMLLV 109 (115)
T ss_dssp SSCEEEEEE
T ss_pred CCCceEEEE
Confidence 777776654
No 87
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=40.33 E-value=40 Score=31.53 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=27.2
Q ss_pred CcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 524 PVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 524 ~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
+.++++++++|.+.+-..++|+.. ...+++||+|=
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEE
Confidence 467999999999998776655432 36799999984
No 88
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=38.79 E-value=95 Score=25.92 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=34.1
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
+....+.+|+.-.. ....++++|++|.+.+... +|+ ...+++||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~-~g~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTE-DGK-----KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEET-TCC-----EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEEC-CCC-----EEEECCCCEEE
Confidence 44667788876554 4468999999999998653 233 35799999874
No 89
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=38.43 E-value=45 Score=31.12 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=36.2
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
+....++||......-..++++++|++|.+++...+.+... ...+++||.+-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~---~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE---EEEECCCCEEE
Confidence 45567888887655433467999999999998554332221 46799999874
No 90
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=38.09 E-value=50 Score=27.30 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=33.7
Q ss_pred ceEEEeCCCcEEEcC--CCC-cCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 507 LKPVLYTEKSFIVRE--GDP-VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 507 l~~~~~~kge~Ii~e--Gd~-~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
+....+.+|..+-.. -.. ..++++|++|.+.+.. +++ ...+++||.+-
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV--DGH-----TQALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 344577888876544 344 6799999999998765 333 35789998763
No 91
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=36.81 E-value=51 Score=28.17 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=35.0
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
+....+.+|..+-.--....++++|++|.+.+.. +++ ...+++||.+-
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE-----TRVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 4455778888775555556899999999998765 333 35789999763
No 92
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=36.13 E-value=59 Score=26.21 Aligned_cols=47 Identities=11% Similarity=0.098 Sum_probs=32.2
Q ss_pred eEEEeCCCcEEEcCCCC-cCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 508 KPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 508 ~~~~~~kge~Ii~eGd~-~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
....+.+|..+-..-.. .+++++|++|.+.+.. +++ ...+++||.+-
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~--~~~-----~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV--GEE-----EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 44567788876443334 3579999999998754 333 35789999863
No 93
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=35.37 E-value=55 Score=27.95 Aligned_cols=49 Identities=20% Similarity=0.146 Sum_probs=33.4
Q ss_pred ceEEEeCCCcEEEcCCCCc-CeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 507 LKPVLYTEKSFIVREGDPV-EEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~~-~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
+....+++|..+-..-... .++++|++|.+.+... +|+ ...+++||.+-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~~~-----~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG-NGI-----VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS-TTC-----EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC-CCe-----EEEeCCCCEEE
Confidence 4456778888875544553 6889999999987532 343 35789999763
No 94
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=34.24 E-value=85 Score=30.32 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=47.6
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 004940 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQA 586 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~A 586 (722)
+....+++|+.+-..-.+.+++++|++|.+++.. +|+ ...+++||.+=--+ . ....+.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~-----~~~l~~Gd~i~ip~-------~-------~~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGK-----PFIVKKGESAVLPA-------N-------IPHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTE-----EEEEETTEEEEECT-------T-------SCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCE-----EEEECCCCEEEECC-------C-------CcEEEEe
Confidence 4566889999986666667789999999998764 343 36789999864221 1 2446777
Q ss_pred -cccceEEEe
Q 004940 587 -LTEVEAFSL 595 (722)
Q Consensus 587 -le~~ell~L 595 (722)
.++++++.+
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 788776643
No 95
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=33.64 E-value=39 Score=21.47 Aligned_cols=19 Identities=37% Similarity=0.288 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 004940 626 WRTWAACFIQAAWRRHSKK 644 (722)
Q Consensus 626 ~~~~~~~~~q~~~~~~~~r 644 (722)
-+.+++.+||.+|+++..+
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~ 22 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3568899999999998765
No 96
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=33.18 E-value=41 Score=22.07 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 004940 626 WRTWAACFIQAAWRRHSKKK 645 (722)
Q Consensus 626 ~~~~~~~~~q~~~~~~~~r~ 645 (722)
-+.+++.+||.+|+++.-|.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr 23 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQR 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999987653
No 97
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=30.61 E-value=95 Score=27.92 Aligned_cols=64 Identities=8% Similarity=0.111 Sum_probs=39.6
Q ss_pred cCCCCcCeEEEEEeeEEEEEEecC--CeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEecH
Q 004940 520 REGDPVEEMLFVMRGNLVSTTTYG--GRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMA 597 (722)
Q Consensus 520 ~eGd~~~~lyfI~~G~v~v~~~~~--g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~~ 597 (722)
+.-+..|++|+|++|.+.+...++ +... .....+++|+++-- |+- -..+-.|.++|.++.+..
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~-d~~V~l~~Ge~yvV--------PkG------veH~p~a~~e~~vLLiEp 109 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFN-IELTLMEKGKVYNV--------PAE------CWFYSITQKDTKMMYVQD 109 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEE-EEEEECCTTCCEEE--------CTT------CEEEEEECTTCEEEEEEE
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCc-cceEEecCCCEEEe--------CCC------ccCcccCCCceEEEEEEe
Confidence 344567899999999999866532 1100 11467899998742 221 133556677777777654
Q ss_pred H
Q 004940 598 D 598 (722)
Q Consensus 598 ~ 598 (722)
.
T Consensus 110 ~ 110 (140)
T 3d0j_A 110 S 110 (140)
T ss_dssp S
T ss_pred C
Confidence 3
No 98
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=28.06 E-value=37 Score=27.81 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=31.5
Q ss_pred eEEEeCCCcEEEcCCCCcC-eEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 508 KPVLYTEKSFIVREGDPVE-EMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 508 ~~~~~~kge~Ii~eGd~~~-~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
....++||...-..-.... ++++|++|.+++... +|.+ ...+.+||.+-
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~g~~----~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETP-EGSV----TSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEET-TEEE----EEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeC-CCCE----EEEEcCCCEEE
Confidence 3456777776522223344 599999999987653 3312 36799999874
No 99
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=27.81 E-value=74 Score=29.20 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=32.6
Q ss_pred eEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 508 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 508 ~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
....+.+|..+-..-....++++|++|.+.+.. +++ ...+++||++-
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL--DDR-----VEPLTPLDCVY 105 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 344667776654444457899999999998754 333 35789999874
No 100
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=27.71 E-value=54 Score=28.68 Aligned_cols=45 Identities=22% Similarity=0.147 Sum_probs=31.3
Q ss_pred EEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 510 VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 510 ~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
....+|..-....+ .+++++|++|.+.+... +|+ ...+++||.+-
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~-----~~~l~~GD~~~ 98 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGT-----VHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCC-----EEEEETTCEEE
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCe-----EEEECCCCEEE
Confidence 35566766654332 38999999999987643 444 35689999875
No 101
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=27.35 E-value=77 Score=29.57 Aligned_cols=49 Identities=18% Similarity=0.101 Sum_probs=32.2
Q ss_pred EEeCCCcEEE---cCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 510 VLYTEKSFIV---REGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 510 ~~~~kge~Ii---~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
..+.+|...- .-.....++++|++|.+++...+++... ...+++||.+-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 3567776543 1233457999999999998764422111 46799999874
No 102
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=27.17 E-value=1.9e+02 Score=23.45 Aligned_cols=68 Identities=10% Similarity=0.143 Sum_probs=40.8
Q ss_pred eEEEeCCCcEEEcCCCCc-CeE-EEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 004940 508 KPVLYTEKSFIVREGDPV-EEM-LFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQ 585 (722)
Q Consensus 508 ~~~~~~kge~Ii~eGd~~-~~l-yfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~ 585 (722)
....+.+|..+-..-... .++ ++|++|.+.+...+ |+ ...+.+||.+---. . ....+.
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ip~-------~-------~~H~~~ 95 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG-DA-----VIPAPRGAVLVAPI-------S-------TPHGVR 95 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG-GC-----EEEECTTEEEEEET-------T-------SCEEEE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC-CE-----EEEECCCCEEEeCC-------C-------CcEEEE
Confidence 344667887765433333 466 89999999875421 23 35789998763221 1 234566
Q ss_pred EcccceEEEe
Q 004940 586 ALTEVEAFSL 595 (722)
Q Consensus 586 Ale~~ell~L 595 (722)
+.+++.++.+
T Consensus 96 ~~~~~~~l~~ 105 (110)
T 2q30_A 96 AVTDMKVLVT 105 (110)
T ss_dssp ESSSEEEEEE
T ss_pred EcCCcEEEEE
Confidence 7777665543
No 103
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=26.75 E-value=71 Score=28.63 Aligned_cols=50 Identities=12% Similarity=-0.005 Sum_probs=35.4
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
+....+++|..+-.-.....+.++|++|..+. ..|.... -..+++||++-
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~---~~g~~~~--~~~~~~Gd~~~ 95 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV---RGGKAAG--GDTAIAPGYGY 95 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE---TTCGGGT--SEEEESSEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE---cCCCEec--ceEeCCCEEEE
Confidence 55678999999877777778889999999973 2332210 14678888764
No 104
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=26.49 E-value=1.2e+02 Score=28.51 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=35.1
Q ss_pred ceEEEeCCCcEEEcCCCC-cCeEEEEEeeEEEEEEecCC---eeeEeeeEEecCCCeec
Q 004940 507 LKPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTTYGG---RTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~-~~~lyfI~~G~v~v~~~~~g---~e~~~~~~~l~~Gd~fG 561 (722)
+....+.+|...-.--.+ ..++++|++|.+++...+++ .+.. ...+++||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~--~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY--SRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEE--EEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEE--EEEECCCCEEE
Confidence 445677888865433333 57999999999998654332 2211 36799999874
No 105
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=26.07 E-value=73 Score=27.70 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=32.7
Q ss_pred EEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 509 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 509 ~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
.-...+|..-.... ..++++.|++|.+.+... +|. ...+++||.+-
T Consensus 46 vWe~tPG~~~~~~~-~~~E~~~iLeG~~~lt~d-dG~-----~~~l~aGD~~~ 91 (116)
T 3es4_A 46 VWMAEPGIYNYAGR-DLEETFVVVEGEALYSQA-DAD-----PVKIGPGSIVS 91 (116)
T ss_dssp EEEECSEEEEECCC-SEEEEEEEEECCEEEEET-TCC-----CEEECTTEEEE
T ss_pred EEecCCceeECeeC-CCcEEEEEEEeEEEEEeC-CCe-----EEEECCCCEEE
Confidence 34667777665553 345899999999998654 444 35789999885
No 106
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=25.61 E-value=98 Score=30.03 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=29.8
Q ss_pred EeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 511 LYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 511 ~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
.+.||..+=.--.+.+++|+|++|.++.... +++ ...+++||.+=
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~-~g~-----~~~l~pGd~v~ 182 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHLR-NAP-----DLMLEPGQTRF 182 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEET-TSC-----CEEECTTCEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEEC-CCC-----EEecCCCCEEE
Confidence 4444444333335678999999999987553 233 36789999874
No 107
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=25.25 E-value=1.6e+02 Score=29.62 Aligned_cols=64 Identities=16% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCc---EEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccc
Q 004940 514 EKS---FIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEV 590 (722)
Q Consensus 514 kge---~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ 590 (722)
.|+ ...+ -+..++++++++|.+.+-..++|+-.. ..+++|++| +-|+.. ..+=++-++|
T Consensus 38 gGpN~R~d~H-~~~~dE~FyqlkG~m~l~~~d~g~~~~---V~i~eGemf--------llP~gv------~HsP~r~~et 99 (286)
T 2qnk_A 38 GGPNTRKDYH-IEEGEEVFYQLEGDMVLRVLEQGKHRD---VVIRQGEIF--------LLPARV------PHSPQRFANT 99 (286)
T ss_dssp CSCBCCCCEE-ECSSCEEEEEEESCEEEEEEETTEEEE---EEECTTEEE--------EECTTC------CEEEEECTTC
T ss_pred eCCCcCccCc-CCCCCeEEEEEeCeEEEEEEeCCceee---EEECCCeEE--------EeCCCC------CcCCcccCCe
Q ss_pred eEEEe
Q 004940 591 EAFSL 595 (722)
Q Consensus 591 ell~L 595 (722)
..+.|
T Consensus 100 ~gLvi 104 (286)
T 2qnk_A 100 VGLVV 104 (286)
T ss_dssp EEEEE
T ss_pred EEEEE
No 108
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=25.23 E-value=1e+02 Score=24.74 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=33.7
Q ss_pred cCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccceEEEec
Q 004940 525 VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLM 596 (722)
Q Consensus 525 ~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~ell~L~ 596 (722)
..++++|++|.+.+... ++ ...+.+||.+- ..+. ....+.+.+++.++.++
T Consensus 50 ~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFR--DQ-----NITLQAGEMYV-------IPKG-------VEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEECS--SC-----EEEEETTEEEE-------ECTT-------CCBEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC--CE-----EEEEcCCCEEE-------ECCC-------CeEeeEcCCCCEEEEEE
Confidence 37999999999987542 32 35688998763 2221 23356666788887765
No 109
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=25.07 E-value=70 Score=28.93 Aligned_cols=50 Identities=8% Similarity=-0.055 Sum_probs=32.6
Q ss_pred eEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCe------eeEeeeEEecCCCeec
Q 004940 508 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGR------TGFFNAVYLKAGDFCG 561 (722)
Q Consensus 508 ~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~------e~~~~~~~l~~Gd~fG 561 (722)
....+++|..+-.--....++++|++|.+.+...++++ + ...+.+||++-
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~----~~~l~~Gd~i~ 99 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQ----EIPFFQNTTFS 99 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCE----EEEECTTEEEE
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccE----EEEeCCCCEEE
Confidence 34467777654222234568999999999987654221 2 46789999863
No 110
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=24.89 E-value=94 Score=29.04 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=26.3
Q ss_pred CcCeEEEEEeeEEEEEEecCC---eeeEeeeEEecCCCeec
Q 004940 524 PVEEMLFVMRGNLVSTTTYGG---RTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 524 ~~~~lyfI~~G~v~v~~~~~g---~e~~~~~~~l~~Gd~fG 561 (722)
+.++++++++|.+.+-..++| ++ +.-..+++||+|=
T Consensus 53 ~~eE~Fy~lkG~m~l~v~d~g~~~~~--~~dv~i~eGdmfl 91 (176)
T 1zvf_A 53 PTPEWFYQKKGSMLLKVVDETDAEPK--FIDIIINEGDSYL 91 (176)
T ss_dssp SSCEEEEEEESCEEEEEEECSSSSCE--EEEEEECTTEEEE
T ss_pred CCceEEEEEeCEEEEEEEcCCCcccc--eeeEEECCCCEEE
Confidence 456999999999999776655 11 1136799999984
No 111
>1q2h_A APS, adaptor protein with pleckstrin homology and SRC homology 2 domains; signal transduction, signaling protein; 1.70A {Homo sapiens} SCOP: a.34.4.1
Probab=24.28 E-value=2.1e+02 Score=22.38 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHhHHHHHhhcc
Q 004940 638 WRRHSKKKLAQSLQEAEDRLQDALATEAGALTSLGATMYASKFAANLLHP 687 (722)
Q Consensus 638 ~~~~~~r~~~~~~~~aeery~~~~~~~p~~~~~vp~~~iASr~a~~~~~~ 687 (722)
|...++|...-.-.+=-..|..++..+|+..+.++-.....||+.+-++-
T Consensus 7 W~EFCE~HAraAA~DfA~~~~~f~~~nP~~~~~~s~~~Fs~~F~~~F~~h 56 (69)
T 1q2h_A 7 WRQFCELHAQAAAVDFAHKFCRFLRDNPAYDTPDAGASFSRHFAANFLDV 56 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccHHHHHHHHHHHHHHH
Confidence 55566666666555656678899999999988888888999999876543
No 112
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=23.98 E-value=69 Score=29.14 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=31.3
Q ss_pred EEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 509 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 509 ~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
...+++|..+-..-....++++|++|.+++.. +|+ ...+.+||++=
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~-----~~~l~~Gd~i~ 93 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET-----ISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 33556666654444456789999999998764 333 35788998763
No 113
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=23.69 E-value=76 Score=26.66 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=29.2
Q ss_pred EEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 510 VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 510 ~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
..+++|..+-.--....++++|++|.+.+.. +++. ...+.+||++-
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~~----~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL--EDQE----PHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEE--TTSC----CEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEE--CCEE----EEEeCCCCEEE
Confidence 3556666543222345689999999998765 2332 12689999763
No 114
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=23.57 E-value=1e+02 Score=26.25 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=47.7
Q ss_pred eEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEc
Q 004940 508 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQAL 587 (722)
Q Consensus 508 ~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Al 587 (722)
....+++|...-..-....++++|++|.+.+.. +++ ...+++||++--- +. ....+.+.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~-----~~~l~~Gd~~~i~-------~~-------~~H~~~~~ 95 (128)
T 4i4a_A 37 AWCIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE-----DFPVTKGDLIIIP-------LD-------SEHHVINN 95 (128)
T ss_dssp EEEEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEEC-------TT-------CCEEEEEC
T ss_pred EEEEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE-----EEEECCCcEEEEC-------CC-------CcEEeEeC
Confidence 344566777544333456799999999998765 333 3578999886422 11 12244443
Q ss_pred --ccce--EEEecHHHHHHHHHHhH
Q 004940 588 --TEVE--AFSLMADDLKSVASQFR 608 (722)
Q Consensus 588 --e~~e--ll~L~~~df~~L~~~~P 608 (722)
++++ ++.++.+-+..++.+-+
T Consensus 96 ~~~~~~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 96 NQEDFHFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp SSSCEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEECHHHHHHHHHhcc
Confidence 3333 45667777776665533
No 115
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=23.49 E-value=77 Score=29.57 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=32.4
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCee
Q 004940 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 560 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 560 (722)
+....+++|...-.--....+..+|++|.+++...+ |+ ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge-----~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GA-----KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GC-----EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-Ce-----EEEECCCCEE
Confidence 445567777754333344557889999999986432 33 3579999998
No 116
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=23.00 E-value=69 Score=29.50 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=31.6
Q ss_pred EEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 509 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 509 ~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
...+.+|..+-..-....++++|++|.+++.. +|+ ...+++||++-
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~-----~~~l~~GD~i~ 102 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA-----VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 34566776654444556789999999998754 333 36789999874
No 117
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=22.91 E-value=1.3e+02 Score=26.70 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=32.1
Q ss_pred eEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 508 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 508 ~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
....+++|..+-.--....++++|++|.+.+... +++ ...+.+||.+-
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~--~~~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQER--GKP----ARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEET--TSC----CEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEEC--CEE----EEEECCCCEEE
Confidence 3456677776643334457899999999987643 221 15688998874
No 118
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=21.87 E-value=91 Score=26.77 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=30.5
Q ss_pred EEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 509 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 509 ~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
...+++|...-.--....++++|++|.+++.. +++ ...+.+||++-
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK--EQG-----EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEEC--SSC-----EEEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEEE
Confidence 34556666554333446799999999998754 233 35688998763
No 119
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=21.65 E-value=60 Score=26.89 Aligned_cols=68 Identities=9% Similarity=0.147 Sum_probs=39.6
Q ss_pred eCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccce
Q 004940 512 YTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVE 591 (722)
Q Consensus 512 ~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~Ale~~e 591 (722)
..+|+.....-+...++++|++|.+.+...+ ++ ...+++||.+--- +. ....+.+.+++.
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~~~~~~~ 94 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GG-----SMTIREGEMAVVP-------KS-------VSHRPRSENGCS 94 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETT-SC-----EEEECTTEEEEEC-------TT-------CCEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECC-Cc-----EEEECCCCEEEEC-------CC-------CcEeeEeCCCeE
Confidence 3455543233332389999999999876533 23 3679999987321 11 123455556788
Q ss_pred EEEecHHH
Q 004940 592 AFSLMADD 599 (722)
Q Consensus 592 ll~L~~~d 599 (722)
++.+....
T Consensus 95 ~l~i~~~~ 102 (107)
T 2i45_A 95 LVLIELSD 102 (107)
T ss_dssp EEEEECC-
T ss_pred EEEEECCC
Confidence 77776543
No 120
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=21.51 E-value=93 Score=33.34 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=38.3
Q ss_pred cceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 506 HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 506 ~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
.+....++||..+..--...+++++|++|.+++...+.+... ...+++||++-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEEE
Confidence 356678899997766655677999999999998553333221 46789999874
No 121
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=21.26 E-value=1e+02 Score=26.80 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=32.0
Q ss_pred eEEEeCCCcEEEcCCCC-cCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 508 KPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 508 ~~~~~~kge~Ii~eGd~-~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
....+++|..+-.--.. ..++++|++|.+.+.. +++ ...+.+||.+-
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 107 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD--NGK-----DVPIKAGDVCF 107 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE--TTE-----EEEEETTEEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEE--CCE-----EEEeCCCcEEE
Confidence 34577888766432233 4689999999998754 333 35789998863
No 122
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=21.22 E-value=1.5e+02 Score=30.64 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=35.7
Q ss_pred ceEEEeCCCcEEEcCCCC-cCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeec
Q 004940 507 LKPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~-~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fG 561 (722)
+....+.+|...-..-.. .+++++|++|.+++...+ +|+.. ...+++||++-
T Consensus 54 ~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 107 (361)
T 2vqa_A 54 GVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE---IADVDKGGLWY 107 (361)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred eEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE---EEEEcCCCEEE
Confidence 345567788865433344 789999999999986644 34321 36799999864
No 123
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=20.70 E-value=1.1e+02 Score=27.79 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=24.2
Q ss_pred CcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 524 PVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 524 ~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
..+++++|++|.+++.. +|+ ...+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~-----~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR-----KVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 46789999999999874 454 36799999874
No 124
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=20.53 E-value=1.3e+02 Score=28.33 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=45.9
Q ss_pred cceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 004940 506 HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQ 585 (722)
Q Consensus 506 ~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~~~~~~~ti~ 585 (722)
.+....+++|..+-.-.....++.+|++|... ++ ...+.+||++=.- +. ...+..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de-------~~~~~~Gd~~~~p-------~g-------~~H~p~ 180 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DE-------TDRFGAGDIEIAD-------QE-------LEHTPV 180 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CS-------SSEEETTCEEEEC-------SS-------CCCCCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CC-------cEEECCCeEEEeC-------cC-------CccCCE
Confidence 45677899999999888889999999999965 22 2458889886322 11 233455
Q ss_pred E--cccceEEEe
Q 004940 586 A--LTEVEAFSL 595 (722)
Q Consensus 586 A--le~~ell~L 595 (722)
+ .++|.++..
T Consensus 181 a~~~~gc~~l~~ 192 (195)
T 2q1z_B 181 AERGLDCICLAA 192 (195)
T ss_dssp ECSSSCEEEEEE
T ss_pred eCCCCCEEEEEE
Confidence 5 677777764
No 125
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=20.50 E-value=1.4e+02 Score=31.11 Aligned_cols=52 Identities=13% Similarity=0.024 Sum_probs=36.3
Q ss_pred ceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEec-CCeeeEeeeEEecCCCeec
Q 004940 507 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 507 l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fG 561 (722)
+....+.+|..+-..-....++.+|++|.+++...+ +|+.. ...+++||++-
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~---~~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF---IDDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE---EEEeCCCCEEE
Confidence 344577888866443344789999999999987655 35431 24789999863
No 126
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=20.25 E-value=98 Score=26.13 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=24.2
Q ss_pred CCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 523 DPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 523 d~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
...+++++|++|.+++...++ .+ ...+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~-~~----~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGD-TA----PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTC-SS----CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCE-EE----EEEECCCCEEE
Confidence 456699999999998865332 11 14689999874
No 127
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=20.13 E-value=1.1e+02 Score=33.04 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=39.2
Q ss_pred hcceEEEeCCCcEEEcCCCCcCeEEEEEeeEEEEEEecCCeeeEeeeEEecCCCeec
Q 004940 505 DHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 561 (722)
Q Consensus 505 ~~l~~~~~~kge~Ii~eGd~~~~lyfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 561 (722)
-.+....++||..+..--..++++++|++|.+.+...+.+... ...+++||++-
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 114 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD---SYILEQGHAQK 114 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE---EEEeCCCCEEE
Confidence 3456778899998876655677999999999998554333221 46789999874
Done!