Query 004941
Match_columns 722
No_of_seqs 504 out of 2910
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 15:26:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0234 Fructose-6-phosphate 2 100.0 2.3E-72 5E-77 606.9 36.5 398 316-722 24-431 (438)
2 PTZ00322 6-phosphofructo-2-kin 100.0 2.1E-65 4.5E-70 599.5 44.5 388 319-721 214-637 (664)
3 PF01591 6PF2K: 6-phosphofruct 100.0 2E-51 4.4E-56 418.6 18.5 212 312-528 3-222 (222)
4 PRK15004 alpha-ribazole phosph 100.0 1.3E-33 2.9E-38 284.6 20.7 187 529-719 1-194 (199)
5 PRK13463 phosphatase PhoE; Pro 100.0 1.4E-33 2.9E-38 285.7 20.2 188 528-719 2-197 (203)
6 PRK14116 gpmA phosphoglyceromu 100.0 9.1E-34 2E-38 292.1 19.0 187 529-717 2-225 (228)
7 PRK01112 phosphoglyceromutase; 100.0 5.6E-33 1.2E-37 286.1 19.8 186 528-717 1-224 (228)
8 PRK14119 gpmA phosphoglyceromu 100.0 5.1E-33 1.1E-37 286.5 19.0 184 529-714 2-222 (228)
9 PRK14117 gpmA phosphoglyceromu 100.0 8E-33 1.7E-37 285.4 20.4 189 528-718 1-226 (230)
10 PRK14118 gpmA phosphoglyceromu 100.0 2.2E-32 4.8E-37 281.6 19.5 181 529-711 1-218 (227)
11 PRK01295 phosphoglyceromutase; 100.0 3.8E-32 8.3E-37 275.9 19.7 182 528-711 2-195 (206)
12 TIGR03848 MSMEG_4193 probable 100.0 7.3E-32 1.6E-36 272.8 20.2 184 530-719 1-197 (204)
13 PRK14120 gpmA phosphoglyceromu 100.0 8.3E-32 1.8E-36 280.7 20.5 184 526-711 2-220 (249)
14 PRK03482 phosphoglycerate muta 100.0 1.3E-31 2.8E-36 273.1 21.2 179 528-710 1-186 (215)
15 COG0406 phoE Broad specificity 100.0 1.1E-31 2.4E-36 271.7 20.2 183 528-712 2-191 (208)
16 TIGR03162 ribazole_cobC alpha- 100.0 5.5E-32 1.2E-36 266.8 17.5 170 531-706 1-177 (177)
17 PRK14115 gpmA phosphoglyceromu 100.0 1.8E-31 3.9E-36 278.0 21.9 191 529-721 1-228 (247)
18 PRK13462 acid phosphatase; Pro 100.0 2.4E-31 5.1E-36 269.5 20.8 182 526-718 3-191 (203)
19 TIGR01258 pgm_1 phosphoglycera 100.0 2.9E-31 6.2E-36 276.2 21.2 190 529-720 1-227 (245)
20 PRK07238 bifunctional RNase H/ 100.0 2.3E-29 5.1E-34 277.0 21.9 189 527-719 170-366 (372)
21 PF00300 His_Phos_1: Histidine 99.9 1.2E-27 2.6E-32 229.1 12.6 150 530-681 1-158 (158)
22 PTZ00123 phosphoglycerate muta 99.9 3.3E-26 7.1E-31 237.2 19.4 169 541-711 1-206 (236)
23 smart00855 PGAM Phosphoglycera 99.9 8.6E-27 1.9E-31 225.1 14.1 146 530-681 1-155 (155)
24 KOG0235 Phosphoglycerate mutas 99.9 7.3E-26 1.6E-30 228.1 15.2 183 526-710 3-200 (214)
25 COG0588 GpmA Phosphoglycerate 99.9 7.2E-25 1.6E-29 217.0 13.8 184 528-713 1-221 (230)
26 PTZ00122 phosphoglycerate muta 99.9 4.4E-21 9.5E-26 205.1 16.1 167 529-719 103-286 (299)
27 cd07067 HP_PGM_like Histidine 99.9 5.6E-21 1.2E-25 183.5 14.0 135 530-710 1-143 (153)
28 cd05816 CBM20_DPE2_repeat2 Dis 99.8 5.6E-19 1.2E-23 159.2 9.8 88 33-121 2-89 (99)
29 cd07040 HP Histidine phosphata 99.8 4.5E-18 9.7E-23 162.2 14.4 132 530-710 1-143 (153)
30 PF00686 CBM_20: Starch bindin 99.8 1.1E-18 2.3E-23 156.4 8.6 88 30-121 1-92 (96)
31 cd05807 CBM20_CGTase CGTase, C 99.7 2.3E-17 5E-22 149.2 9.1 90 29-121 1-94 (101)
32 COG0529 CysC Adenylylsulfate k 99.7 4.1E-16 9E-21 151.5 13.9 117 316-446 19-136 (197)
33 cd05820 CBM20_novamyl Novamyl 99.7 9.7E-17 2.1E-21 145.7 8.8 90 30-122 2-95 (103)
34 TIGR00249 sixA phosphohistidin 99.7 1.3E-15 2.8E-20 147.8 17.0 136 529-710 1-140 (152)
35 cd05810 CBM20_alpha_MTH Glucan 99.7 1.9E-16 4.2E-21 142.2 9.1 88 32-120 2-90 (97)
36 cd05467 CBM20 The family 20 ca 99.7 3.1E-16 6.7E-21 139.8 9.0 85 32-119 1-87 (96)
37 cd05817 CBM20_DSP Dual-specifi 99.6 5E-16 1.1E-20 140.3 9.2 83 33-117 2-84 (100)
38 cd05808 CBM20_alpha_amylase Al 99.6 6.3E-16 1.4E-20 137.8 9.1 84 32-119 2-85 (95)
39 PRK06193 hypothetical protein; 99.6 3.3E-15 7.2E-20 151.3 14.7 128 528-687 42-176 (206)
40 cd05809 CBM20_beta_amylase Bet 99.6 8.1E-16 1.7E-20 138.7 9.1 87 30-118 2-90 (99)
41 PF01583 APS_kinase: Adenylyls 99.6 3.9E-15 8.5E-20 144.4 12.9 116 319-447 1-116 (156)
42 KOG4754 Predicted phosphoglyce 99.6 3.4E-15 7.4E-20 147.9 12.2 160 528-687 14-201 (248)
43 PRK10848 phosphohistidine phos 99.6 2.8E-14 6E-19 139.5 17.8 135 529-709 1-139 (159)
44 cd05814 CBM20_Prei4 Prei4, N-t 99.6 2E-15 4.4E-20 140.8 7.9 83 33-116 3-94 (120)
45 COG0645 Predicted kinase [Gene 99.6 9E-15 1.9E-19 142.0 12.1 142 321-488 2-149 (170)
46 cd05811 CBM20_glucoamylase Glu 99.6 6.6E-15 1.4E-19 134.1 10.3 90 28-121 4-97 (106)
47 PLN02950 4-alpha-glucanotransf 99.6 5.1E-15 1.1E-19 177.8 10.9 111 26-138 148-272 (909)
48 PF13671 AAA_33: AAA domain; P 99.6 3.8E-14 8.1E-19 134.2 14.5 139 322-476 1-141 (143)
49 cd05815 CBM20_DPE2_repeat1 Dis 99.6 8.4E-15 1.8E-19 132.4 9.0 84 33-119 2-88 (101)
50 cd05818 CBM20_water_dikinase P 99.5 2.5E-14 5.3E-19 127.3 9.8 84 31-121 2-85 (92)
51 KOG4609 Predicted phosphoglyce 99.5 5.2E-14 1.1E-18 139.3 11.6 164 527-717 93-268 (284)
52 COG2062 SixA Phosphohistidine 99.5 9E-14 1.9E-18 135.4 13.2 142 528-711 1-143 (163)
53 cd05813 CBM20_genethonin_1 Gen 99.5 3E-14 6.6E-19 127.3 8.7 79 32-115 2-80 (95)
54 cd05806 CBM20_laforin Laforin 99.5 6.2E-14 1.3E-18 128.7 9.2 82 32-116 2-95 (112)
55 KOG3734 Predicted phosphoglyce 99.5 3.4E-13 7.3E-18 140.4 12.4 163 525-691 9-219 (272)
56 PRK15416 lipopolysaccharide co 99.5 6E-13 1.3E-17 134.0 13.7 118 528-688 54-173 (201)
57 COG0703 AroK Shikimate kinase 99.5 2.7E-13 5.8E-18 133.0 10.8 138 322-481 4-144 (172)
58 PHA02530 pseT polynucleotide k 99.4 1.7E-12 3.6E-17 138.8 16.6 145 320-484 2-149 (300)
59 TIGR01663 PNK-3'Pase polynucle 99.4 3.8E-12 8.2E-17 145.3 17.2 138 317-496 366-507 (526)
60 PRK05537 bifunctional sulfate 99.4 7.8E-13 1.7E-17 153.0 11.8 146 290-448 362-509 (568)
61 cd02027 APSK Adenosine 5'-phos 99.4 2.3E-12 4.9E-17 124.6 13.1 113 322-446 1-113 (149)
62 KOG0635 Adenosine 5'-phosphosu 99.4 1.9E-12 4.2E-17 122.6 10.8 111 317-441 28-138 (207)
63 cd02021 GntK Gluconate kinase 99.3 2.2E-11 4.8E-16 116.8 14.7 117 322-452 1-119 (150)
64 PF08433 KTI12: Chromatin asso 99.3 2.1E-11 4.6E-16 129.0 15.4 134 322-476 3-138 (270)
65 TIGR03574 selen_PSTK L-seryl-t 99.3 1.5E-11 3.2E-16 128.5 13.2 112 322-448 1-114 (249)
66 TIGR00455 apsK adenylylsulfate 99.3 2.9E-11 6.2E-16 120.4 13.4 117 318-446 16-132 (184)
67 PRK06762 hypothetical protein; 99.3 5.8E-11 1.3E-15 116.0 15.0 114 320-451 2-116 (166)
68 PRK00889 adenylylsulfate kinas 99.3 7.9E-11 1.7E-15 116.2 14.2 115 318-446 2-116 (175)
69 COG4088 Predicted nucleotide k 99.2 6.2E-11 1.3E-15 118.1 12.4 135 322-476 3-139 (261)
70 PRK05506 bifunctional sulfate 99.2 2.5E-11 5.3E-16 143.0 11.3 129 315-461 455-583 (632)
71 PRK13948 shikimate kinase; Pro 99.2 9.6E-11 2.1E-15 117.1 13.3 139 319-480 9-150 (182)
72 cd00227 CPT Chloramphenicol (C 99.2 7.6E-11 1.6E-15 116.6 12.4 117 321-451 3-131 (175)
73 PRK03846 adenylylsulfate kinas 99.2 1.4E-10 3E-15 117.2 14.4 119 315-447 19-138 (198)
74 COG4639 Predicted kinase [Gene 99.2 1.1E-10 2.4E-15 111.9 11.9 112 320-447 2-114 (168)
75 cd00464 SK Shikimate kinase (S 99.2 1.4E-10 3E-15 111.2 12.3 138 323-481 2-140 (154)
76 PRK00625 shikimate kinase; Pro 99.2 1.1E-10 2.4E-15 115.7 11.8 137 322-480 2-141 (173)
77 PRK05541 adenylylsulfate kinas 99.2 6.4E-11 1.4E-15 117.0 9.1 116 318-449 5-120 (176)
78 TIGR01313 therm_gnt_kin carboh 99.2 3.9E-10 8.4E-15 109.8 14.4 109 323-452 1-115 (163)
79 TIGR03575 selen_PSTK_euk L-ser 99.1 8.9E-10 1.9E-14 119.9 15.3 126 322-448 1-173 (340)
80 PLN02950 4-alpha-glucanotransf 99.1 1.4E-10 2.9E-15 140.0 9.6 86 33-120 9-98 (909)
81 PRK11545 gntK gluconate kinase 99.1 1.1E-09 2.3E-14 107.6 12.9 141 326-496 1-143 (163)
82 PRK12339 2-phosphoglycerate ki 99.0 6.4E-09 1.4E-13 105.3 16.5 126 319-453 2-142 (197)
83 PRK13946 shikimate kinase; Pro 99.0 2.3E-09 5E-14 107.1 12.9 138 319-479 9-150 (184)
84 PRK13949 shikimate kinase; Pro 99.0 1.9E-09 4.1E-14 106.5 11.8 138 323-480 4-146 (169)
85 PRK14021 bifunctional shikimat 99.0 2.3E-09 5E-14 124.1 14.0 144 319-482 5-152 (542)
86 PRK12337 2-phosphoglycerate ki 99.0 1.7E-08 3.7E-13 112.9 18.7 130 318-454 253-407 (475)
87 PRK14532 adenylate kinase; Pro 99.0 3.2E-09 6.9E-14 105.9 11.5 147 322-485 2-155 (188)
88 PLN02199 shikimate kinase 99.0 3.9E-09 8.5E-14 112.1 12.6 140 320-480 102-251 (303)
89 PRK13947 shikimate kinase; Pro 99.0 5.5E-09 1.2E-13 102.3 12.1 139 322-479 3-141 (171)
90 PRK05057 aroK shikimate kinase 99.0 7.7E-09 1.7E-13 102.4 13.0 139 320-481 4-146 (172)
91 KOG3062 RNA polymerase II elon 98.9 5.3E-09 1.1E-13 105.5 11.5 139 322-476 3-143 (281)
92 KOG4238 Bifunctional ATP sulfu 98.9 2.6E-09 5.6E-14 113.4 8.3 111 317-439 47-157 (627)
93 PRK14527 adenylate kinase; Pro 98.9 6.1E-09 1.3E-13 104.5 10.7 157 319-496 5-175 (191)
94 PRK00131 aroK shikimate kinase 98.9 9.2E-09 2E-13 100.3 11.5 140 319-481 3-146 (175)
95 PF06414 Zeta_toxin: Zeta toxi 98.9 1.7E-08 3.7E-13 102.0 12.8 131 317-453 12-143 (199)
96 TIGR01359 UMP_CMP_kin_fam UMP- 98.9 9.6E-09 2.1E-13 101.7 10.7 152 322-496 1-167 (183)
97 PRK03731 aroL shikimate kinase 98.8 2.1E-08 4.5E-13 98.5 11.7 136 322-480 4-145 (171)
98 PRK09825 idnK D-gluconate kina 98.8 1.1E-07 2.4E-12 94.7 15.2 141 321-496 4-151 (176)
99 PRK14531 adenylate kinase; Pro 98.8 6.4E-09 1.4E-13 103.7 6.3 139 322-486 4-153 (183)
100 PF07931 CPT: Chloramphenicol 98.8 4.9E-08 1.1E-12 96.9 10.9 118 321-451 2-130 (174)
101 PRK01184 hypothetical protein; 98.8 1.6E-07 3.4E-12 93.4 14.6 139 321-478 2-143 (184)
102 PRK08154 anaerobic benzoate ca 98.7 7.2E-08 1.6E-12 104.2 12.1 146 316-479 129-275 (309)
103 PLN02200 adenylate kinase fami 98.7 1.2E-07 2.6E-12 98.6 12.2 155 318-496 41-207 (234)
104 PRK13951 bifunctional shikimat 98.7 1.2E-07 2.5E-12 108.5 12.3 134 322-482 2-139 (488)
105 TIGR01360 aden_kin_iso1 adenyl 98.7 2.5E-07 5.5E-12 91.6 13.0 139 322-484 5-154 (188)
106 COG3265 GntK Gluconate kinase 98.7 1E-07 2.2E-12 91.0 9.4 141 326-496 1-142 (161)
107 PF01202 SKI: Shikimate kinase 98.6 3E-08 6.4E-13 96.7 5.5 129 329-481 1-134 (158)
108 cd01428 ADK Adenylate kinase ( 98.6 6.6E-07 1.4E-11 89.1 14.7 152 323-487 2-174 (194)
109 PRK12338 hypothetical protein; 98.6 4.7E-07 1E-11 97.7 13.6 127 319-453 3-152 (319)
110 PRK14530 adenylate kinase; Pro 98.6 6E-07 1.3E-11 91.8 13.1 149 322-486 5-182 (215)
111 PRK00279 adk adenylate kinase; 98.6 3.5E-07 7.6E-12 93.5 10.8 147 322-486 2-183 (215)
112 KOG3354 Gluconate kinase [Carb 98.5 1.1E-06 2.4E-11 84.5 11.0 122 319-453 11-140 (191)
113 TIGR01351 adk adenylate kinase 98.5 4.3E-07 9.2E-12 92.6 8.7 146 323-487 2-181 (210)
114 PRK06217 hypothetical protein; 98.5 2E-06 4.4E-11 85.7 13.3 129 322-479 3-134 (183)
115 PRK03839 putative kinase; Prov 98.4 6.2E-07 1.3E-11 88.9 8.8 100 322-452 2-101 (180)
116 PRK04040 adenylate kinase; Pro 98.4 3.8E-06 8.3E-11 84.5 13.3 39 320-361 2-40 (188)
117 PF13207 AAA_17: AAA domain; P 98.4 9.7E-07 2.1E-11 81.2 8.2 33 322-359 1-33 (121)
118 PRK06696 uridine kinase; Valid 98.3 1.2E-06 2.5E-11 90.3 7.1 44 317-360 19-62 (223)
119 PRK14528 adenylate kinase; Pro 98.3 5E-06 1.1E-10 83.4 11.5 147 322-487 3-158 (186)
120 PRK02496 adk adenylate kinase; 98.3 5.6E-06 1.2E-10 82.4 11.1 139 322-485 3-152 (184)
121 PRK08356 hypothetical protein; 98.3 2.6E-05 5.6E-10 78.6 15.7 120 319-453 4-137 (195)
122 PTZ00088 adenylate kinase 1; P 98.3 5.7E-06 1.2E-10 85.8 11.1 150 320-486 6-196 (229)
123 PLN02674 adenylate kinase 98.2 7.1E-06 1.5E-10 85.8 11.3 149 320-486 31-214 (244)
124 cd02028 UMPK_like Uridine mono 98.2 1E-05 2.2E-10 80.7 11.9 151 322-486 1-169 (179)
125 PRK04182 cytidylate kinase; Pr 98.2 2.6E-06 5.6E-11 83.6 7.5 33 321-358 1-33 (180)
126 PRK04220 2-phosphoglycerate ki 98.2 5.6E-05 1.2E-09 81.1 17.8 130 318-454 90-238 (301)
127 cd02020 CMPK Cytidine monophos 98.2 1.5E-05 3.2E-10 75.5 12.0 145 322-496 1-146 (147)
128 PRK08233 hypothetical protein; 98.2 2.7E-05 5.8E-10 76.6 14.2 27 319-345 2-28 (182)
129 PRK13808 adenylate kinase; Pro 98.2 9.4E-06 2E-10 88.3 11.7 148 323-486 3-162 (333)
130 TIGR02173 cyt_kin_arch cytidyl 98.2 8.9E-06 1.9E-10 79.2 10.4 36 321-361 1-36 (171)
131 cd01672 TMPK Thymidine monopho 98.2 9.9E-05 2.2E-09 73.2 17.8 34 321-354 1-34 (200)
132 PRK10078 ribose 1,5-bisphospho 98.1 1.5E-05 3.2E-10 79.7 11.1 25 321-345 3-27 (186)
133 TIGR03263 guanyl_kin guanylate 98.1 2.2E-05 4.8E-10 77.5 12.2 26 321-346 2-27 (180)
134 PRK00698 tmk thymidylate kinas 98.1 0.00012 2.5E-09 73.6 17.5 34 320-353 3-36 (205)
135 PRK07667 uridine kinase; Provi 98.1 4.7E-05 1E-09 76.7 14.4 41 319-359 16-56 (193)
136 PRK14526 adenylate kinase; Pro 98.1 1.5E-05 3.2E-10 81.8 10.8 145 323-487 3-179 (211)
137 PRK00300 gmk guanylate kinase; 98.1 2.3E-05 4.9E-10 79.1 11.8 27 319-345 4-30 (205)
138 PRK06761 hypothetical protein; 98.1 1.3E-05 2.9E-10 85.4 10.3 122 321-452 4-128 (282)
139 TIGR02322 phosphon_PhnN phosph 98.1 3.3E-05 7.2E-10 76.3 12.4 26 322-347 3-28 (179)
140 COG0563 Adk Adenylate kinase a 98.1 5.4E-05 1.2E-09 75.7 13.7 142 322-487 2-154 (178)
141 TIGR00041 DTMP_kinase thymidyl 98.1 0.00012 2.6E-09 73.1 16.4 35 320-354 3-37 (195)
142 PRK14738 gmk guanylate kinase; 98.1 2.3E-05 4.9E-10 79.9 11.2 26 318-343 11-36 (206)
143 PF08303 tRNA_lig_kinase: tRNA 98.1 5.4E-05 1.2E-09 74.1 13.1 134 322-488 1-152 (168)
144 PRK06547 hypothetical protein; 98.1 6.4E-05 1.4E-09 74.7 13.8 37 318-359 13-49 (172)
145 PRK07261 topology modulation p 98.1 1.8E-05 3.9E-10 78.3 9.6 26 322-347 2-27 (171)
146 PRK13975 thymidylate kinase; P 98.0 8.7E-05 1.9E-09 74.3 14.4 27 320-346 2-28 (196)
147 PRK08118 topology modulation p 98.0 2.6E-05 5.6E-10 77.0 10.1 25 323-347 4-28 (167)
148 PRK15453 phosphoribulokinase; 98.0 2.6E-05 5.6E-10 82.8 10.6 43 319-361 4-46 (290)
149 PLN02459 probable adenylate ki 98.0 4.1E-05 9E-10 80.7 12.1 150 319-487 28-221 (261)
150 PRK05480 uridine/cytidine kina 98.0 6.6E-05 1.4E-09 76.3 12.4 40 318-359 4-43 (209)
151 PRK05416 glmZ(sRNA)-inactivati 98.0 0.00011 2.4E-09 78.8 14.6 105 321-460 7-115 (288)
152 COG1102 Cmk Cytidylate kinase 98.0 2.3E-05 5.1E-10 76.2 8.4 133 321-482 1-134 (179)
153 PF00406 ADK: Adenylate kinase 98.0 5.2E-05 1.1E-09 73.0 10.9 131 325-485 1-142 (151)
154 PRK14737 gmk guanylate kinase; 98.0 8.4E-05 1.8E-09 74.7 12.6 27 319-345 3-29 (186)
155 PF00485 PRK: Phosphoribulokin 98.0 6.2E-05 1.3E-09 75.8 11.4 152 322-487 1-179 (194)
156 PRK14529 adenylate kinase; Pro 97.9 2.8E-05 6.1E-10 80.4 8.8 114 323-452 3-127 (223)
157 cd02029 PRK_like Phosphoribulo 97.9 3.3E-05 7.1E-10 81.5 8.4 40 322-361 1-40 (277)
158 PRK13973 thymidylate kinase; P 97.9 0.00083 1.8E-08 68.8 18.4 35 320-354 3-37 (213)
159 COG0541 Ffh Signal recognition 97.9 0.00015 3.3E-09 80.4 13.5 44 318-361 98-141 (451)
160 COG0572 Udk Uridine kinase [Nu 97.9 8E-05 1.7E-09 76.2 10.2 155 318-487 6-181 (218)
161 PRK14730 coaE dephospho-CoA ki 97.8 0.00025 5.4E-09 71.8 13.0 39 321-364 2-40 (195)
162 TIGR01425 SRP54_euk signal rec 97.8 0.00018 3.9E-09 80.9 12.1 43 318-360 98-140 (429)
163 PLN02348 phosphoribulokinase 97.8 0.00018 3.8E-09 79.8 11.7 158 317-487 46-235 (395)
164 COG4185 Uncharacterized protei 97.8 0.00037 8E-09 67.8 12.2 149 320-487 2-150 (187)
165 COG2074 2-phosphoglycerate kin 97.7 0.00056 1.2E-08 71.0 13.6 130 315-453 84-232 (299)
166 smart00072 GuKc Guanylate kina 97.7 0.00039 8.4E-09 69.5 12.1 24 321-344 3-26 (184)
167 PLN02924 thymidylate kinase 97.7 0.0018 4E-08 66.9 16.5 37 318-354 14-50 (220)
168 cd01673 dNK Deoxyribonucleosid 97.6 0.00089 1.9E-08 66.9 13.7 25 322-346 1-25 (193)
169 PRK00081 coaE dephospho-CoA ki 97.6 0.00071 1.5E-08 68.3 13.0 37 321-363 3-39 (194)
170 TIGR00152 dephospho-CoA kinase 97.6 0.00068 1.5E-08 67.8 12.6 37 322-363 1-37 (188)
171 PRK13477 bifunctional pantoate 97.6 0.00028 6.1E-09 81.1 10.8 38 319-361 283-321 (512)
172 PF00625 Guanylate_kin: Guanyl 97.6 0.0014 3.1E-08 65.2 14.4 113 320-451 2-135 (183)
173 PRK09270 nucleoside triphospha 97.6 0.0023 5E-08 66.2 16.3 43 317-359 30-73 (229)
174 PRK10867 signal recognition pa 97.6 0.00049 1.1E-08 77.8 12.0 45 318-362 98-143 (433)
175 cd02023 UMPK Uridine monophosp 97.6 0.001 2.2E-08 66.9 13.2 37 322-360 1-37 (198)
176 KOG3079 Uridylate kinase/adeny 97.6 0.0019 4.1E-08 64.4 14.4 145 319-486 7-162 (195)
177 PF00448 SRP54: SRP54-type pro 97.6 0.00068 1.5E-08 68.8 11.7 42 320-361 1-42 (196)
178 PTZ00301 uridine kinase; Provi 97.5 0.00098 2.1E-08 68.4 12.7 156 320-487 3-180 (210)
179 cd02030 NDUO42 NADH:Ubiquinone 97.5 0.0013 2.8E-08 67.7 13.4 26 322-347 1-26 (219)
180 PRK00771 signal recognition pa 97.5 0.00043 9.3E-09 78.4 10.6 44 318-361 93-136 (437)
181 TIGR00064 ftsY signal recognit 97.5 0.00091 2E-08 71.3 12.0 44 318-361 70-113 (272)
182 cd02022 DPCK Dephospho-coenzym 97.5 0.00088 1.9E-08 66.7 10.7 36 322-363 1-36 (179)
183 PLN02165 adenylate isopentenyl 97.5 0.00072 1.6E-08 73.7 10.7 37 318-359 41-77 (334)
184 cd03115 SRP The signal recogni 97.4 0.0011 2.4E-08 65.2 11.2 40 322-361 2-41 (173)
185 cd02025 PanK Pantothenate kina 97.4 0.0021 4.6E-08 66.3 13.7 38 322-359 1-40 (220)
186 TIGR00959 ffh signal recogniti 97.4 0.00091 2E-08 75.6 11.8 44 318-361 97-141 (428)
187 KOG0780 Signal recognition par 97.4 0.00069 1.5E-08 73.9 10.1 106 313-424 94-205 (483)
188 COG0194 Gmk Guanylate kinase [ 97.4 0.0025 5.4E-08 63.8 13.1 114 319-453 3-137 (191)
189 PRK07933 thymidylate kinase; V 97.4 0.0055 1.2E-07 62.9 15.8 34 321-354 1-34 (213)
190 PF02223 Thymidylate_kin: Thym 97.4 0.012 2.5E-07 58.6 17.8 26 325-350 1-26 (186)
191 COG0237 CoaE Dephospho-CoA kin 97.4 0.0024 5.2E-08 65.1 12.9 36 320-361 2-37 (201)
192 PLN02842 nucleotide kinase 97.4 0.0028 6.1E-08 72.6 14.7 31 324-359 1-31 (505)
193 PRK14974 cell division protein 97.3 0.0015 3.2E-08 71.7 11.6 44 318-361 138-181 (336)
194 TIGR00235 udk uridine kinase. 97.3 0.0037 7.9E-08 63.6 13.2 39 319-359 5-43 (207)
195 cd02024 NRK1 Nicotinamide ribo 97.3 0.0014 3.1E-08 66.0 9.8 34 322-359 1-34 (187)
196 cd02019 NK Nucleoside/nucleoti 97.3 0.00035 7.6E-09 58.7 4.4 31 322-354 1-31 (69)
197 KOG2134 Polynucleotide kinase 97.2 0.00029 6.3E-09 76.7 4.7 101 319-452 268-369 (422)
198 PRK13974 thymidylate kinase; P 97.2 0.003 6.6E-08 64.6 12.0 29 320-348 3-31 (212)
199 COG0125 Tmk Thymidylate kinase 97.2 0.019 4.1E-07 59.0 17.5 36 319-354 2-37 (208)
200 PRK09169 hypothetical protein; 97.2 0.001 2.2E-08 85.4 9.5 138 320-481 2110-2256(2316)
201 PHA00729 NTP-binding motif con 97.2 0.0022 4.7E-08 66.4 10.1 26 320-345 17-42 (226)
202 TIGR00017 cmk cytidylate kinas 97.1 0.0092 2E-07 61.5 14.4 35 320-359 2-36 (217)
203 PRK10416 signal recognition pa 97.1 0.0034 7.4E-08 68.4 11.6 43 318-360 112-154 (318)
204 PRK13976 thymidylate kinase; P 97.1 0.017 3.7E-07 59.3 16.0 32 321-352 1-34 (209)
205 cd07061 HP_HAP_like Histidine 97.1 0.00069 1.5E-08 70.3 5.8 57 530-595 5-69 (242)
206 KOG3220 Similar to bacterial d 97.1 0.013 2.9E-07 59.2 14.3 116 321-451 2-146 (225)
207 PHA03132 thymidine kinase; Pro 97.1 0.039 8.4E-07 64.4 20.3 25 320-344 257-281 (580)
208 PRK14731 coaE dephospho-CoA ki 97.1 0.0028 6.1E-08 64.7 9.8 37 319-361 4-40 (208)
209 COG2019 AdkA Archaeal adenylat 97.1 0.0075 1.6E-07 59.3 12.0 36 320-359 4-39 (189)
210 PRK00023 cmk cytidylate kinase 97.1 0.0039 8.5E-08 64.6 10.7 32 320-351 4-35 (225)
211 PRK07429 phosphoribulokinase; 97.0 0.0094 2E-07 65.3 13.9 41 317-359 5-45 (327)
212 PF00004 AAA: ATPase family as 97.0 0.0038 8.3E-08 57.5 9.2 34 323-359 1-34 (132)
213 PRK14734 coaE dephospho-CoA ki 97.0 0.0099 2.1E-07 60.5 12.9 37 321-363 2-38 (200)
214 cd00071 GMPK Guanosine monopho 97.0 0.0013 2.9E-08 62.7 6.1 24 322-345 1-24 (137)
215 KOG3347 Predicted nucleotide k 97.0 0.006 1.3E-07 59.0 10.2 35 322-361 9-43 (176)
216 PF01121 CoaE: Dephospho-CoA k 97.0 0.0057 1.2E-07 61.3 10.6 133 321-480 1-160 (180)
217 PF13238 AAA_18: AAA domain; P 97.0 0.00063 1.4E-08 62.5 3.5 22 323-344 1-22 (129)
218 COG1428 Deoxynucleoside kinase 96.9 0.013 2.8E-07 59.8 12.9 27 320-346 4-30 (216)
219 COG3896 Chloramphenicol 3-O-ph 96.9 0.0058 1.3E-07 59.5 9.6 125 319-449 22-159 (205)
220 COG1936 Predicted nucleotide k 96.9 0.0048 1E-07 61.1 9.1 32 322-359 2-33 (180)
221 KOG4622 Predicted nucleotide k 96.9 0.0022 4.8E-08 64.1 6.7 119 322-448 3-140 (291)
222 PTZ00451 dephospho-CoA kinase; 96.9 0.016 3.4E-07 60.9 13.4 38 321-363 2-39 (244)
223 PRK09435 membrane ATPase/prote 96.9 0.0044 9.6E-08 67.8 9.6 42 317-358 53-94 (332)
224 PLN02318 phosphoribulokinase/u 96.9 0.0041 8.9E-08 72.2 9.6 148 317-484 62-227 (656)
225 PRK05439 pantothenate kinase; 96.9 0.0015 3.2E-08 70.8 5.8 43 317-359 83-127 (311)
226 PRK14490 putative bifunctional 96.9 0.0017 3.6E-08 72.2 6.3 35 319-354 4-38 (369)
227 smart00382 AAA ATPases associa 96.8 0.0029 6.2E-08 57.5 6.4 37 321-357 3-39 (148)
228 cd01120 RecA-like_NTPases RecA 96.8 0.008 1.7E-07 57.0 9.6 38 322-359 1-38 (165)
229 PLN02422 dephospho-CoA kinase 96.7 0.017 3.6E-07 60.3 12.3 35 322-362 3-37 (232)
230 PF03668 ATP_bind_2: P-loop AT 96.7 0.024 5.3E-07 60.5 13.3 106 322-461 3-112 (284)
231 PRK03333 coaE dephospho-CoA ki 96.7 0.0039 8.4E-08 70.0 7.5 35 322-362 3-37 (395)
232 PF06309 Torsin: Torsin; Inte 96.6 0.008 1.7E-07 56.7 8.1 42 313-354 46-87 (127)
233 PRK12724 flagellar biosynthesi 96.6 0.013 2.9E-07 65.8 11.1 43 319-361 222-265 (432)
234 PRK11889 flhF flagellar biosyn 96.6 0.013 2.8E-07 65.4 10.7 42 319-360 240-281 (436)
235 cd02026 PRK Phosphoribulokinas 96.6 0.024 5.3E-07 60.5 12.5 36 322-359 1-36 (273)
236 PRK14732 coaE dephospho-CoA ki 96.6 0.018 3.9E-07 58.4 10.9 36 322-363 1-36 (196)
237 KOG1533 Predicted GTPase [Gene 96.5 0.019 4.1E-07 59.4 10.3 116 320-442 2-146 (290)
238 PRK00091 miaA tRNA delta(2)-is 96.5 0.0081 1.8E-07 65.2 8.2 35 319-358 3-37 (307)
239 PRK09361 radB DNA repair and r 96.5 0.037 8.1E-07 56.8 12.6 39 319-357 22-60 (225)
240 PRK12726 flagellar biosynthesi 96.4 0.019 4.1E-07 63.9 10.8 43 319-361 205-247 (407)
241 COG0552 FtsY Signal recognitio 96.4 0.027 5.8E-07 61.2 11.5 91 317-435 136-228 (340)
242 TIGR02237 recomb_radB DNA repa 96.4 0.028 6E-07 56.9 11.2 38 319-356 11-48 (209)
243 cd01394 radB RadB. The archaea 96.4 0.026 5.7E-07 57.5 10.9 38 319-356 18-55 (218)
244 PRK06893 DNA replication initi 96.4 0.052 1.1E-06 56.3 13.2 35 322-356 41-75 (229)
245 PRK08084 DNA replication initi 96.4 0.076 1.7E-06 55.3 14.4 37 322-358 47-83 (235)
246 PF13173 AAA_14: AAA domain 96.3 0.027 5.9E-07 52.7 9.8 84 321-427 3-86 (128)
247 cd00009 AAA The AAA+ (ATPases 96.3 0.015 3.2E-07 53.4 7.9 37 320-356 19-55 (151)
248 PRK14733 coaE dephospho-CoA ki 96.3 0.0042 9.1E-08 63.5 4.4 38 319-361 5-42 (204)
249 PRK14956 DNA polymerase III su 96.3 0.071 1.5E-06 61.1 14.6 151 320-477 40-194 (484)
250 CHL00181 cbbX CbbX; Provisiona 96.3 0.11 2.5E-06 55.8 15.4 31 319-349 58-88 (287)
251 cd02861 E_set_proteins_like E 96.2 0.015 3.2E-07 50.5 7.1 54 32-96 3-56 (82)
252 PRK14960 DNA polymerase III su 96.2 0.065 1.4E-06 63.4 14.0 28 319-346 36-63 (702)
253 PLN02796 D-glycerate 3-kinase 96.2 0.0059 1.3E-07 66.9 5.1 42 318-359 98-139 (347)
254 COG1618 Predicted nucleotide k 96.2 0.045 9.8E-07 53.8 10.5 110 320-433 5-135 (179)
255 cd00984 DnaB_C DnaB helicase C 96.2 0.066 1.4E-06 55.3 12.6 39 319-357 12-51 (242)
256 PLN02840 tRNA dimethylallyltra 96.2 0.01 2.2E-07 66.7 7.0 30 318-347 19-48 (421)
257 TIGR00554 panK_bact pantothena 96.2 0.0069 1.5E-07 65.1 5.4 43 317-359 59-103 (290)
258 PRK08727 hypothetical protein; 96.1 0.073 1.6E-06 55.4 12.5 37 322-358 43-79 (233)
259 PF13521 AAA_28: AAA domain; P 96.0 0.02 4.4E-07 55.7 7.7 21 323-343 2-22 (163)
260 TIGR03499 FlhF flagellar biosy 96.0 0.008 1.7E-07 64.4 5.2 42 319-360 193-236 (282)
261 PLN03046 D-glycerate 3-kinase; 96.0 0.008 1.7E-07 67.3 5.3 43 317-359 209-251 (460)
262 TIGR02881 spore_V_K stage V sp 96.0 0.06 1.3E-06 56.8 11.7 30 319-348 41-70 (261)
263 PRK05800 cobU adenosylcobinami 96.0 0.011 2.3E-07 58.8 5.4 24 322-345 3-26 (170)
264 PRK14955 DNA polymerase III su 96.0 0.12 2.6E-06 58.2 14.3 29 319-347 37-65 (397)
265 PF05496 RuvB_N: Holliday junc 95.9 0.022 4.8E-07 58.9 7.7 25 322-346 52-76 (233)
266 PF03029 ATP_bind_1: Conserved 95.9 0.0068 1.5E-07 63.4 4.1 33 325-357 1-33 (238)
267 PRK14949 DNA polymerase III su 95.9 0.083 1.8E-06 64.3 13.6 29 319-347 37-65 (944)
268 PRK12323 DNA polymerase III su 95.9 0.091 2E-06 62.1 13.3 28 319-346 37-64 (700)
269 PRK07003 DNA polymerase III su 95.9 0.056 1.2E-06 64.7 11.7 141 319-468 37-184 (830)
270 PRK12377 putative replication 95.9 0.05 1.1E-06 57.3 10.2 41 321-361 102-142 (248)
271 PRK04296 thymidine kinase; Pro 95.9 0.034 7.3E-07 56.0 8.7 35 321-355 3-37 (190)
272 cd02034 CooC The accessory pro 95.9 0.012 2.6E-07 54.7 4.9 36 323-358 2-37 (116)
273 PLN02772 guanylate kinase 95.8 0.11 2.4E-06 58.0 12.9 26 319-344 134-159 (398)
274 PRK14722 flhF flagellar biosyn 95.7 0.078 1.7E-06 59.1 11.5 42 319-360 136-179 (374)
275 PLN03025 replication factor C 95.7 0.087 1.9E-06 57.3 11.8 24 323-346 37-60 (319)
276 PRK13768 GTPase; Provisional 95.7 0.013 2.8E-07 61.8 5.2 39 320-358 2-40 (253)
277 PRK12723 flagellar biosynthesi 95.7 0.16 3.4E-06 57.1 13.9 44 318-361 172-219 (388)
278 PRK10751 molybdopterin-guanine 95.7 0.014 3.1E-07 58.1 5.2 36 319-354 5-40 (173)
279 TIGR02880 cbbX_cfxQ probable R 95.7 0.056 1.2E-06 58.0 10.1 29 321-349 59-87 (284)
280 PRK08116 hypothetical protein; 95.7 0.067 1.4E-06 57.0 10.5 40 320-359 114-153 (268)
281 cd01124 KaiC KaiC is a circadi 95.7 0.097 2.1E-06 51.5 11.1 36 322-357 1-36 (187)
282 KOG1532 GTPase XAB1, interacts 95.7 0.013 2.8E-07 61.8 4.9 41 317-357 16-56 (366)
283 PRK11860 bifunctional 3-phosph 95.7 0.19 4.2E-06 60.2 15.5 37 320-361 442-479 (661)
284 cd01122 GP4d_helicase GP4d_hel 95.7 0.083 1.8E-06 55.7 11.1 47 310-357 21-68 (271)
285 PF13401 AAA_22: AAA domain; P 95.7 0.024 5.1E-07 52.5 6.1 38 319-356 3-45 (131)
286 cd01983 Fer4_NifH The Fer4_Nif 95.7 0.014 3.1E-07 50.2 4.4 34 322-355 1-34 (99)
287 COG1660 Predicted P-loop-conta 95.7 0.23 4.9E-06 52.4 13.7 21 322-342 3-23 (286)
288 PLN02748 tRNA dimethylallyltra 95.6 0.023 4.9E-07 65.0 6.9 88 318-413 20-122 (468)
289 KOG0744 AAA+-type ATPase [Post 95.6 0.013 2.8E-07 63.1 4.6 27 319-345 176-202 (423)
290 TIGR00176 mobB molybdopterin-g 95.6 0.014 3E-07 57.1 4.4 34 322-355 1-34 (155)
291 KOG3877 NADH:ubiquinone oxidor 95.6 0.38 8.2E-06 51.1 15.0 39 310-348 61-99 (393)
292 PRK06645 DNA polymerase III su 95.6 0.11 2.4E-06 60.3 12.4 27 320-346 43-69 (507)
293 PF00328 His_Phos_2: Histidine 95.6 0.025 5.5E-07 60.7 6.9 45 551-595 61-112 (347)
294 TIGR00750 lao LAO/AO transport 95.6 0.018 3.8E-07 62.3 5.5 42 318-359 32-73 (300)
295 PRK14961 DNA polymerase III su 95.6 0.14 3E-06 56.9 12.7 27 319-345 37-63 (363)
296 smart00763 AAA_PrkA PrkA AAA d 95.5 0.012 2.5E-07 65.0 4.0 29 318-346 76-104 (361)
297 TIGR00174 miaA tRNA isopenteny 95.5 0.02 4.4E-07 61.5 5.8 32 322-358 1-32 (287)
298 PRK13695 putative NTPase; Prov 95.5 0.13 2.8E-06 50.7 11.1 29 322-350 2-30 (174)
299 PRK05973 replicative DNA helic 95.5 0.026 5.6E-07 59.1 6.2 39 319-357 63-101 (237)
300 PRK14959 DNA polymerase III su 95.5 0.21 4.5E-06 59.1 14.2 27 320-346 38-64 (624)
301 PRK05703 flhF flagellar biosyn 95.5 0.13 2.7E-06 58.5 12.1 42 320-361 221-264 (424)
302 PRK07952 DNA replication prote 95.5 0.06 1.3E-06 56.6 8.8 38 322-359 101-138 (244)
303 PRK08691 DNA polymerase III su 95.4 0.2 4.3E-06 59.8 13.8 29 319-347 37-65 (709)
304 cd04163 Era Era subfamily. Er 95.4 0.28 6E-06 46.1 12.6 24 320-343 3-26 (168)
305 PF07728 AAA_5: AAA domain (dy 95.3 0.022 4.8E-07 53.7 4.7 23 323-345 2-24 (139)
306 PF07724 AAA_2: AAA domain (Cd 95.3 0.031 6.7E-07 55.5 5.9 40 320-359 3-43 (171)
307 PF03796 DnaB_C: DnaB-like hel 95.3 0.11 2.5E-06 54.5 10.5 107 319-435 18-137 (259)
308 PRK13342 recombination factor 95.3 0.27 5.8E-06 55.6 14.2 24 322-345 38-61 (413)
309 PF13481 AAA_25: AAA domain; P 95.3 0.034 7.3E-07 55.3 6.2 37 321-357 33-79 (193)
310 KOG0738 AAA+-type ATPase [Post 95.3 0.067 1.4E-06 59.1 8.7 90 284-390 212-302 (491)
311 cd03116 MobB Molybdenum is an 95.3 0.025 5.3E-07 55.6 5.1 34 321-354 2-35 (159)
312 TIGR01618 phage_P_loop phage n 95.3 0.04 8.6E-07 57.0 6.8 33 319-358 11-43 (220)
313 PRK14962 DNA polymerase III su 95.3 0.11 2.5E-06 59.6 11.2 28 319-346 35-62 (472)
314 PLN00020 ribulose bisphosphate 95.2 0.065 1.4E-06 59.4 8.5 39 318-359 146-184 (413)
315 TIGR03420 DnaA_homol_Hda DnaA 95.2 0.026 5.7E-07 57.5 5.3 41 319-359 37-77 (226)
316 cd02859 AMPKbeta_GBD_like AMP- 95.2 0.057 1.2E-06 46.7 6.5 53 32-96 3-55 (79)
317 PRK07994 DNA polymerase III su 95.2 0.17 3.6E-06 60.2 12.5 28 319-346 37-64 (647)
318 PRK08181 transposase; Validate 95.2 0.081 1.8E-06 56.4 9.0 39 321-359 107-145 (269)
319 cd03114 ArgK-like The function 95.2 0.023 5E-07 55.0 4.4 37 322-358 1-37 (148)
320 TIGR00150 HI0065_YjeE ATPase, 95.2 0.018 3.9E-07 54.9 3.6 29 319-347 21-49 (133)
321 cd01131 PilT Pilus retraction 95.2 0.18 3.9E-06 51.1 11.0 25 322-346 3-27 (198)
322 PF01695 IstB_IS21: IstB-like 95.2 0.026 5.7E-07 56.3 4.9 42 320-361 47-88 (178)
323 COG3709 Uncharacterized compon 95.1 0.23 5.1E-06 48.9 11.0 27 320-346 5-31 (192)
324 PRK05642 DNA replication initi 95.1 0.21 4.6E-06 52.0 11.7 39 321-359 46-84 (234)
325 TIGR03709 PPK2_rel_1 polyphosp 95.1 0.19 4.2E-06 53.4 11.4 112 318-457 54-186 (264)
326 TIGR03878 thermo_KaiC_2 KaiC d 95.1 0.21 4.6E-06 52.8 11.9 39 319-357 35-73 (259)
327 PRK08099 bifunctional DNA-bind 95.1 0.068 1.5E-06 60.2 8.5 29 319-347 218-246 (399)
328 PF00931 NB-ARC: NB-ARC domain 95.1 0.14 3.1E-06 53.9 10.7 28 318-345 17-44 (287)
329 PRK06921 hypothetical protein; 95.1 0.2 4.3E-06 53.3 11.6 37 320-356 117-154 (266)
330 PRK06731 flhF flagellar biosyn 95.1 0.27 5.8E-06 52.5 12.5 41 320-360 75-115 (270)
331 PRK13886 conjugal transfer pro 95.1 0.22 4.7E-06 52.3 11.5 110 320-438 3-123 (241)
332 PRK05896 DNA polymerase III su 95.0 0.26 5.7E-06 58.0 13.3 28 319-346 37-64 (605)
333 PRK12727 flagellar biosynthesi 95.0 0.1 2.3E-06 60.4 9.8 41 320-360 350-392 (559)
334 TIGR03600 phage_DnaB phage rep 95.0 0.24 5.3E-06 55.9 12.8 109 319-436 193-313 (421)
335 cd03246 ABCC_Protease_Secretio 95.0 0.25 5.5E-06 48.6 11.5 106 321-435 29-153 (173)
336 COG0283 Cmk Cytidylate kinase 95.0 0.024 5.2E-07 58.1 4.1 36 321-361 5-41 (222)
337 PF03205 MobB: Molybdopterin g 95.0 0.032 7E-07 53.6 4.9 33 322-354 2-34 (140)
338 PRK14957 DNA polymerase III su 95.0 0.22 4.8E-06 58.2 12.6 28 319-346 37-64 (546)
339 TIGR02012 tigrfam_recA protein 95.0 0.15 3.2E-06 55.7 10.5 38 319-356 54-91 (321)
340 TIGR03708 poly_P_AMP_trns poly 95.0 0.22 4.8E-06 57.4 12.3 113 317-456 37-169 (493)
341 TIGR00635 ruvB Holliday juncti 95.0 0.076 1.6E-06 57.0 8.1 24 322-345 32-55 (305)
342 PRK08939 primosomal protein Dn 95.0 0.15 3.2E-06 55.5 10.3 40 320-359 156-195 (306)
343 cd04169 RF3 RF3 subfamily. Pe 95.0 0.35 7.6E-06 51.5 13.0 24 322-345 4-27 (267)
344 PRK14951 DNA polymerase III su 95.0 0.38 8.2E-06 57.1 14.4 29 319-347 37-65 (618)
345 TIGR03015 pepcterm_ATPase puta 94.9 1.1 2.4E-05 46.8 16.8 26 320-345 43-68 (269)
346 COG5324 Uncharacterized conser 94.9 0.096 2.1E-06 58.9 8.8 147 318-496 372-528 (758)
347 COG1484 DnaC DNA replication p 94.9 0.16 3.5E-06 53.6 10.3 86 319-424 104-192 (254)
348 PRK09183 transposase/IS protei 94.9 0.1 2.2E-06 55.3 8.8 39 321-359 103-141 (259)
349 PF02367 UPF0079: Uncharacteri 94.9 0.032 7E-07 52.5 4.5 28 319-346 14-41 (123)
350 TIGR02655 circ_KaiC circadian 94.9 0.11 2.3E-06 60.0 9.7 50 309-358 252-301 (484)
351 PRK09087 hypothetical protein; 94.9 0.17 3.7E-06 52.5 10.2 112 322-453 46-167 (226)
352 PRK04195 replication factor C 94.9 0.13 2.7E-06 59.4 10.2 37 320-359 39-75 (482)
353 KOG3308 Uncharacterized protei 94.9 0.058 1.3E-06 54.7 6.4 36 320-359 4-39 (225)
354 PRK00149 dnaA chromosomal repl 94.9 0.32 7E-06 55.5 13.3 38 322-359 150-189 (450)
355 TIGR03707 PPK2_P_aer polyphosp 94.9 0.29 6.4E-06 51.0 11.8 109 318-453 29-158 (230)
356 PF05729 NACHT: NACHT domain 94.9 0.024 5.3E-07 54.1 3.6 27 322-348 2-28 (166)
357 PRK14958 DNA polymerase III su 94.8 0.28 6.1E-06 57.0 12.8 29 319-347 37-65 (509)
358 cd00983 recA RecA is a bacter 94.8 0.19 4E-06 55.1 10.7 38 319-356 54-91 (325)
359 KOG2170 ATPase of the AAA+ sup 94.8 0.028 6E-07 60.2 4.1 40 315-354 105-144 (344)
360 PRK08903 DnaA regulatory inact 94.8 0.035 7.6E-07 57.0 4.9 38 321-358 43-80 (227)
361 KOG0730 AAA+-type ATPase [Post 94.8 0.075 1.6E-06 62.0 7.8 29 318-346 466-494 (693)
362 COG2256 MGS1 ATPase related to 94.8 0.035 7.7E-07 61.5 4.9 41 322-362 50-92 (436)
363 PRK14965 DNA polymerase III su 94.7 0.44 9.6E-06 56.2 14.3 28 319-346 37-64 (576)
364 PRK14494 putative molybdopteri 94.7 0.054 1.2E-06 56.4 6.0 33 322-354 3-35 (229)
365 PRK14723 flhF flagellar biosyn 94.7 0.23 5E-06 59.9 12.0 42 319-360 184-227 (767)
366 TIGR03877 thermo_KaiC_1 KaiC d 94.7 0.21 4.5E-06 52.0 10.3 38 319-356 20-57 (237)
367 PRK07764 DNA polymerase III su 94.7 0.33 7.2E-06 59.5 13.4 28 319-346 36-63 (824)
368 TIGR01650 PD_CobS cobaltochela 94.7 0.026 5.7E-07 61.6 3.6 27 323-349 67-93 (327)
369 PF13189 Cytidylate_kin2: Cyti 94.7 0.4 8.6E-06 47.8 11.8 26 322-347 1-26 (179)
370 KOG0733 Nuclear AAA ATPase (VC 94.7 0.09 2E-06 60.9 7.9 27 320-346 223-249 (802)
371 PRK05201 hslU ATP-dependent pr 94.6 0.078 1.7E-06 59.8 7.3 28 320-347 50-77 (443)
372 PRK09518 bifunctional cytidyla 94.6 0.029 6.2E-07 67.8 4.1 26 322-347 3-28 (712)
373 KOG1969 DNA replication checkp 94.6 0.038 8.3E-07 65.0 4.8 42 317-361 323-364 (877)
374 PF00910 RNA_helicase: RNA hel 94.6 0.027 5.9E-07 51.3 2.9 24 323-346 1-24 (107)
375 PRK14964 DNA polymerase III su 94.5 0.41 8.8E-06 55.3 13.0 27 320-346 35-61 (491)
376 PRK05636 replicative DNA helic 94.5 0.28 6.2E-06 56.9 11.8 116 310-435 256-382 (505)
377 TIGR00665 DnaB replicative DNA 94.5 0.4 8.7E-06 54.4 12.9 108 319-435 194-312 (434)
378 PRK11331 5-methylcytosine-spec 94.5 0.085 1.8E-06 60.0 7.1 26 321-346 195-220 (459)
379 PRK04328 hypothetical protein; 94.4 0.22 4.8E-06 52.3 9.8 38 319-356 22-59 (249)
380 PRK06835 DNA replication prote 94.4 0.6 1.3E-05 51.3 13.4 39 321-359 184-222 (329)
381 COG1341 Predicted GTPase or GT 94.4 0.26 5.7E-06 54.9 10.5 41 317-357 70-110 (398)
382 PRK11823 DNA repair protein Ra 94.4 0.32 6.8E-06 55.7 11.6 49 309-357 69-117 (446)
383 cd01895 EngA2 EngA2 subfamily. 94.3 0.45 9.7E-06 45.2 11.0 24 320-343 2-25 (174)
384 cd01121 Sms Sms (bacterial rad 94.3 0.27 5.9E-06 54.9 10.8 48 310-357 72-119 (372)
385 PHA02544 44 clamp loader, smal 94.3 0.52 1.1E-05 50.8 12.7 28 318-345 41-68 (316)
386 PF13245 AAA_19: Part of AAA d 94.3 0.071 1.5E-06 45.8 4.8 24 322-345 12-35 (76)
387 PRK06620 hypothetical protein; 94.3 0.41 8.9E-06 49.2 11.3 25 321-345 45-69 (214)
388 PRK14088 dnaA chromosomal repl 94.2 0.88 1.9E-05 52.0 14.8 37 323-359 133-171 (440)
389 PRK14963 DNA polymerase III su 94.2 0.29 6.3E-06 56.8 11.1 28 319-346 35-62 (504)
390 cd02035 ArsA ArsA ATPase funct 94.2 0.05 1.1E-06 55.8 4.4 38 322-359 1-38 (217)
391 COG4615 PvdE ABC-type sideroph 94.2 0.081 1.8E-06 58.6 6.0 115 319-441 348-479 (546)
392 TIGR00390 hslU ATP-dependent p 94.2 0.036 7.9E-07 62.3 3.5 33 319-351 46-78 (441)
393 COG0470 HolB ATPase involved i 94.2 0.21 4.6E-06 53.5 9.4 26 320-345 24-49 (325)
394 cd01130 VirB11-like_ATPase Typ 94.2 0.12 2.7E-06 51.6 7.0 121 320-453 25-149 (186)
395 PRK08760 replicative DNA helic 94.2 0.41 8.8E-06 55.2 12.1 116 310-435 220-346 (476)
396 PRK06321 replicative DNA helic 94.2 0.46 1E-05 54.7 12.5 117 309-435 216-343 (472)
397 COG4175 ProV ABC-type proline/ 94.2 0.19 4.1E-06 54.4 8.6 25 320-344 54-78 (386)
398 PRK05342 clpX ATP-dependent pr 94.2 0.095 2.1E-06 59.2 6.8 27 321-347 109-135 (412)
399 PRK12402 replication factor C 94.1 0.35 7.6E-06 52.3 11.0 38 322-359 38-77 (337)
400 TIGR00362 DnaA chromosomal rep 94.1 0.74 1.6E-05 51.8 13.9 38 322-359 138-177 (405)
401 PF13191 AAA_16: AAA ATPase do 94.1 0.046 9.9E-07 53.5 3.6 31 317-347 21-51 (185)
402 PF03266 NTPase_1: NTPase; In 94.1 0.052 1.1E-06 53.8 3.9 24 323-346 2-25 (168)
403 PRK14969 DNA polymerase III su 94.0 0.46 1E-05 55.5 12.3 28 319-346 37-64 (527)
404 PRK08006 replicative DNA helic 94.0 0.62 1.3E-05 53.7 13.1 117 310-435 215-343 (471)
405 TIGR03689 pup_AAA proteasome A 94.0 0.11 2.5E-06 60.1 7.2 28 320-347 216-243 (512)
406 KOG3078 Adenylate kinase [Nucl 94.0 0.14 3E-06 53.3 7.1 154 319-487 14-195 (235)
407 PRK14086 dnaA chromosomal repl 94.0 0.65 1.4E-05 54.9 13.4 37 323-359 317-355 (617)
408 PRK05595 replicative DNA helic 94.0 0.53 1.2E-05 53.7 12.5 116 310-435 192-318 (444)
409 PRK09111 DNA polymerase III su 94.0 0.54 1.2E-05 55.7 12.8 29 319-347 45-73 (598)
410 PRK14950 DNA polymerase III su 94.0 0.48 1E-05 56.0 12.5 27 319-345 37-63 (585)
411 COG1419 FlhF Flagellar GTP-bin 94.0 0.93 2E-05 50.8 13.8 42 320-361 203-246 (407)
412 cd01393 recA_like RecA is a b 94.0 0.36 7.8E-06 49.3 10.1 30 319-348 18-47 (226)
413 PRK09165 replicative DNA helic 94.0 0.56 1.2E-05 54.4 12.7 35 310-345 208-242 (497)
414 PRK12269 bifunctional cytidyla 93.9 0.065 1.4E-06 65.6 5.2 37 320-361 34-71 (863)
415 TIGR00416 sms DNA repair prote 93.9 0.12 2.6E-06 59.2 7.1 49 309-357 83-131 (454)
416 PRK13341 recombination factor 93.9 0.64 1.4E-05 56.3 13.5 24 322-345 54-77 (725)
417 PHA02542 41 41 helicase; Provi 93.9 0.48 1E-05 54.6 11.9 49 309-357 179-227 (473)
418 PRK14493 putative bifunctional 93.9 0.075 1.6E-06 56.8 5.0 34 322-356 3-36 (274)
419 PRK03992 proteasome-activating 93.9 0.15 3.2E-06 57.2 7.6 28 319-346 164-191 (389)
420 COG4240 Predicted kinase [Gene 93.9 0.087 1.9E-06 54.5 5.1 42 318-359 48-90 (300)
421 PHA02575 1 deoxynucleoside mon 93.8 0.042 9E-07 56.9 2.8 23 321-343 1-23 (227)
422 cd03230 ABC_DR_subfamily_A Thi 93.8 0.56 1.2E-05 46.1 10.8 26 320-345 26-51 (173)
423 cd04162 Arl9_Arfrp2_like Arl9/ 93.8 0.12 2.6E-06 50.3 5.8 21 323-343 2-22 (164)
424 PRK10646 ADP-binding protein; 93.8 0.063 1.4E-06 52.5 3.8 27 320-346 28-54 (153)
425 PRK00440 rfc replication facto 93.8 0.41 8.8E-06 51.3 10.5 25 323-347 41-65 (319)
426 PF02492 cobW: CobW/HypB/UreG, 93.8 0.083 1.8E-06 52.5 4.8 32 322-354 2-33 (178)
427 cd03228 ABCC_MRP_Like The MRP 93.8 0.5 1.1E-05 46.4 10.3 25 321-345 29-53 (171)
428 cd03247 ABCC_cytochrome_bd The 93.7 0.72 1.6E-05 45.6 11.4 95 321-424 29-140 (178)
429 PRK14952 DNA polymerase III su 93.7 1.2 2.5E-05 52.8 14.9 29 319-347 34-62 (584)
430 TIGR02782 TrbB_P P-type conjug 93.7 0.42 9.2E-06 51.7 10.5 119 320-451 132-251 (299)
431 cd02037 MRP-like MRP (Multiple 93.7 0.079 1.7E-06 51.9 4.5 37 322-358 2-38 (169)
432 cd01886 EF-G Elongation factor 93.7 1.5 3.2E-05 46.8 14.4 23 323-345 2-24 (270)
433 cd03229 ABC_Class3 This class 93.7 0.73 1.6E-05 45.6 11.4 26 320-345 26-51 (178)
434 PF09848 DUF2075: Uncharacteri 93.7 0.47 1E-05 52.4 11.0 34 320-353 1-36 (352)
435 PRK06526 transposase; Provisio 93.6 0.053 1.1E-06 57.3 3.3 37 320-356 98-134 (254)
436 PRK08506 replicative DNA helic 93.6 0.62 1.3E-05 53.7 12.1 108 319-435 191-309 (472)
437 PTZ00361 26 proteosome regulat 93.5 1.4 3.1E-05 50.2 14.8 29 319-347 216-244 (438)
438 KOG1384 tRNA delta(2)-isopente 93.5 0.52 1.1E-05 51.2 10.4 120 319-452 6-159 (348)
439 PRK14954 DNA polymerase III su 93.5 0.83 1.8E-05 54.3 13.2 29 319-347 37-65 (620)
440 PRK06305 DNA polymerase III su 93.5 0.73 1.6E-05 52.8 12.4 28 319-346 38-65 (451)
441 TIGR01420 pilT_fam pilus retra 93.5 0.58 1.3E-05 51.6 11.2 118 320-449 122-240 (343)
442 TIGR01241 FtsH_fam ATP-depende 93.5 0.64 1.4E-05 53.8 12.1 27 320-346 88-114 (495)
443 PRK09354 recA recombinase A; P 93.5 0.58 1.2E-05 51.8 11.0 38 319-356 59-96 (349)
444 PRK06995 flhF flagellar biosyn 93.4 0.093 2E-06 60.3 5.0 42 319-360 255-298 (484)
445 PF07726 AAA_3: ATPase family 93.4 0.037 8.1E-07 52.5 1.5 25 323-347 2-26 (131)
446 TIGR03598 GTPase_YsxC ribosome 93.4 0.54 1.2E-05 46.2 9.8 26 318-343 16-41 (179)
447 PRK12422 chromosomal replicati 93.4 0.9 2E-05 52.0 12.9 35 323-357 144-178 (445)
448 PRK14948 DNA polymerase III su 93.4 0.51 1.1E-05 56.2 11.2 25 322-346 40-64 (620)
449 PRK10536 hypothetical protein; 93.3 0.72 1.6E-05 48.9 11.1 22 322-343 76-97 (262)
450 cd03213 ABCG_EPDR ABCG transpo 93.3 0.67 1.5E-05 46.6 10.5 25 320-344 35-59 (194)
451 CHL00195 ycf46 Ycf46; Provisio 93.3 0.23 5E-06 57.4 8.0 29 319-347 258-286 (489)
452 cd04156 ARLTS1 ARLTS1 subfamil 93.3 0.098 2.1E-06 49.8 4.2 21 323-343 2-22 (160)
453 PF06745 KaiC: KaiC; InterPro 93.2 0.26 5.6E-06 50.6 7.6 38 319-356 18-56 (226)
454 cd01887 IF2_eIF5B IF2/eIF5B (i 93.2 0.45 9.7E-06 45.5 8.8 22 322-343 2-23 (168)
455 TIGR00073 hypB hydrogenase acc 93.2 0.09 1.9E-06 53.5 4.1 28 318-345 20-47 (207)
456 PF01745 IPT: Isopentenyl tran 93.2 0.4 8.7E-06 49.4 8.6 121 321-453 2-140 (233)
457 cd00881 GTP_translation_factor 93.2 0.76 1.6E-05 44.6 10.5 23 323-345 2-24 (189)
458 TIGR02397 dnaX_nterm DNA polym 93.2 1.1 2.4E-05 49.0 12.8 28 319-346 35-62 (355)
459 PF01656 CbiA: CobQ/CobB/MinD/ 93.2 0.13 2.9E-06 50.7 5.1 37 322-358 1-37 (195)
460 PRK05748 replicative DNA helic 93.1 0.9 2E-05 51.9 12.5 116 310-435 194-321 (448)
461 COG0467 RAD55 RecA-superfamily 93.1 0.29 6.3E-06 51.5 7.9 38 319-356 22-59 (260)
462 TIGR03880 KaiC_arch_3 KaiC dom 93.1 0.41 8.8E-06 49.1 8.7 37 320-356 16-52 (224)
463 TIGR02640 gas_vesic_GvpN gas v 93.1 0.072 1.6E-06 56.4 3.3 30 323-355 24-53 (262)
464 cd02854 Glycogen_branching_enz 93.1 0.42 9.2E-06 43.2 7.8 60 32-98 6-70 (99)
465 PRK09302 circadian clock prote 93.1 0.74 1.6E-05 53.4 11.8 38 320-357 31-69 (509)
466 TIGR00382 clpX endopeptidase C 93.0 0.2 4.3E-06 56.6 6.8 26 321-346 117-142 (413)
467 PRK00411 cdc6 cell division co 93.0 0.46 9.9E-06 52.9 9.7 38 319-356 54-93 (394)
468 PTZ00454 26S protease regulato 93.0 0.31 6.7E-06 54.9 8.3 28 319-346 178-205 (398)
469 cd03216 ABC_Carb_Monos_I This 93.0 0.72 1.6E-05 45.0 10.0 104 321-434 27-138 (163)
470 PF02421 FeoB_N: Ferrous iron 93.0 0.16 3.4E-06 49.9 5.2 104 322-438 2-115 (156)
471 cd00550 ArsA_ATPase Oxyanion-t 93.0 0.12 2.5E-06 54.6 4.6 38 322-359 2-39 (254)
472 TIGR03345 VI_ClpV1 type VI sec 93.0 0.19 4.2E-06 61.9 7.1 44 317-360 592-636 (852)
473 COG1855 ATPase (PilT family) [ 93.0 0.082 1.8E-06 59.3 3.5 32 322-353 265-296 (604)
474 PRK10463 hydrogenase nickel in 93.0 0.13 2.9E-06 55.3 5.0 36 318-354 102-137 (290)
475 cd00154 Rab Rab family. Rab G 93.0 0.12 2.5E-06 48.3 4.2 20 323-342 3-22 (159)
476 cd00878 Arf_Arl Arf (ADP-ribos 92.9 0.16 3.4E-06 48.4 5.1 21 323-343 2-22 (158)
477 PRK07004 replicative DNA helic 92.9 0.88 1.9E-05 52.3 12.0 117 309-435 203-331 (460)
478 cd01129 PulE-GspE PulE/GspE Th 92.9 0.67 1.5E-05 49.3 10.3 27 321-347 81-107 (264)
479 PLN03210 Resistant to P. syrin 92.9 1.2 2.5E-05 57.0 14.2 28 319-346 206-233 (1153)
480 cd03214 ABC_Iron-Siderophores_ 92.9 0.83 1.8E-05 45.2 10.4 26 320-345 25-50 (180)
481 COG1072 CoaA Panthothenate kin 92.9 0.14 3E-06 54.4 5.0 41 317-357 79-121 (283)
482 PRK06851 hypothetical protein; 92.9 0.14 3.1E-06 56.9 5.3 36 319-354 29-64 (367)
483 PRK08533 flagellar accessory p 92.9 0.19 4.2E-06 52.2 6.1 36 321-356 25-60 (230)
484 cd01891 TypA_BipA TypA (tyrosi 92.9 0.62 1.3E-05 46.5 9.6 22 322-343 4-25 (194)
485 cd02033 BchX Chlorophyllide re 92.9 0.18 3.8E-06 55.4 6.0 42 318-359 29-70 (329)
486 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.8 0.84 1.8E-05 43.7 10.0 94 321-434 27-123 (144)
487 TIGR02639 ClpA ATP-dependent C 92.8 0.2 4.3E-06 60.8 6.9 39 318-359 481-520 (731)
488 cd02036 MinD Bacterial cell di 92.7 0.15 3.2E-06 49.7 4.7 37 322-358 2-38 (179)
489 COG0466 Lon ATP-dependent Lon 92.7 0.29 6.3E-06 57.9 7.7 40 321-363 351-390 (782)
490 TIGR02928 orc1/cdc6 family rep 92.7 0.47 1E-05 52.1 9.2 27 319-345 39-65 (365)
491 PRK15455 PrkA family serine pr 92.7 0.095 2E-06 61.1 3.6 29 319-347 102-130 (644)
492 PRK14489 putative bifunctional 92.7 0.15 3.2E-06 56.8 5.1 36 319-354 204-239 (366)
493 PRK14087 dnaA chromosomal repl 92.6 2.7 5.9E-05 48.2 15.4 134 323-477 144-290 (450)
494 PRK08840 replicative DNA helic 92.6 1.3 2.8E-05 51.0 12.8 117 310-435 208-336 (464)
495 PF12846 AAA_10: AAA-like doma 92.6 0.16 3.4E-06 53.5 5.0 40 323-362 4-44 (304)
496 PF04665 Pox_A32: Poxvirus A32 92.6 1.6 3.5E-05 45.9 12.4 29 319-347 12-40 (241)
497 PRK08451 DNA polymerase III su 92.6 1.2 2.5E-05 52.1 12.5 28 318-345 34-61 (535)
498 KOG0734 AAA+-type ATPase conta 92.6 0.25 5.4E-06 56.6 6.7 26 318-343 335-360 (752)
499 PF00437 T2SE: Type II/IV secr 92.6 0.46 1E-05 50.1 8.6 117 319-450 126-243 (270)
500 TIGR00101 ureG urease accessor 92.5 0.12 2.5E-06 52.6 3.8 27 320-346 1-27 (199)
No 1
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-72 Score=606.92 Aligned_cols=398 Identities=53% Similarity=0.880 Sum_probs=377.0
Q ss_pred CCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 004941 316 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM 395 (722)
Q Consensus 316 ~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~ 395 (722)
....|.+|+|+|||++|||.++.+|.++|.|.|++|..||.++|||.......+..||.++++++...+.+++..+++|+
T Consensus 24 ~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D~ 103 (438)
T KOG0234|consen 24 FMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALNDL 103 (438)
T ss_pred ccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhhH
Confidence 46789999999999999999999999999999999999999999998877666678999999999999999999999999
Q ss_pred HHHHh-cCCeEEEEeCCCCCHHHHHHHHHHH--cCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 004941 396 ISWMH-EGGQVGIFDATNSSRKRRNMLMKMA--EGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 472 (722)
Q Consensus 396 ~~~l~-~~G~vVIvDAtn~~~~~R~~~~~l~--~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~ 472 (722)
..|+. .+|+++|+||||.++++|..+..+. +.++++.|||+.|+|++++.+||+.++..+|||+++ +.+.++++|+
T Consensus 104 ~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~-~~e~a~~dfl 182 (438)
T KOG0234|consen 104 LHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGK-DQEEALKDFL 182 (438)
T ss_pred HHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCC-CHHHHHHHHH
Confidence 99988 6799999999999999999999994 689999999999999999999999999999999998 9999999999
Q ss_pred HHHHhhhcccccCCC--C---CeEEEeecccCCccceeeeccccccCCceeEEeeccCCCCccEEEecccccccccCCCc
Q 004941 473 NRLANYEKVYEPVDE--G---SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRI 547 (722)
Q Consensus 473 ~Ri~~y~~~yEpl~e--~---~yik~i~~~~~~g~~~~~~~i~gyL~~riv~~L~n~~~~~~~IyLvRHGes~~n~~~~~ 547 (722)
+|+..|+..|||+++ + +|||+||+ |+++.+|+|.|||++||||||||+|..+++|||+||||+++|+.+++
T Consensus 183 ~ri~~ye~~YePld~~~d~~lsyik~in~----g~~~~~~~i~~~l~srivy~lmN~~~~pR~i~l~r~geS~~n~~gri 258 (438)
T KOG0234|consen 183 KRIRNYEKYYEPLDRARDKDLSYIKIINV----GEEIVVHNIEGYLQSRIVYYLMNIHTTPRTIYLTRHGESEFNVEGRI 258 (438)
T ss_pred HHHHhhhhccCcCChhhccccceEEEecc----cceEEEecccceehhhhhhhhhccccCCceEEEEecCCCcccccccc
Confidence 999999999999993 2 99999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhcCCC--cccccccccccCCcCCCCCHHHHHhh
Q 004941 548 GGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFP--KIQWRALDEINAGVCDGMTYEEIKKN 625 (722)
Q Consensus 548 ~GD~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~g~~--v~~~~~L~Ei~~G~~eg~t~~ei~~~ 625 (722)
+||.+|+++|.++|+.+.+++.++.. .-..||||++.||+|||+.+ +.+ +.+|..|+|++.|.|+|+|+++|.+.
T Consensus 259 ggds~ls~~g~~ya~~l~~f~~~~~~--~dl~vwts~~~rti~ta~~l-~~~~~~~~~~~Ldei~ag~~~g~t~eeI~~~ 335 (438)
T KOG0234|consen 259 GGDSPLSERGSQYAKSLIKFVEEQSS--SDLDVWTSQRKRTIQTAEGL-KLDYSVEQWKALDEIDAGVCEGLTYEEIETN 335 (438)
T ss_pred CCcccccHHHHHHHHHHHHHHhhhcc--cCceeccchHHHHhhhHhhc-CcchhhhhHhhcCcccccccccccHHHHHHh
Confidence 99999999999999999999987632 22589999999999999955 444 48999999999999999999999999
Q ss_pred ChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEE
Q 004941 626 MPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIE 705 (722)
Q Consensus 626 ~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~e 705 (722)
||+++.....|+++|+||+||||.|+.+|++|+|.+|+++.. |+||+|..+||||++||+++++.+.+.+.+|.+++++
T Consensus 336 ~p~e~~~r~~dky~yry~~gESy~D~v~RlePvImElEr~~~-Vlvi~Hqavircll~Yf~~~~~~e~p~l~~plhtv~~ 414 (438)
T KOG0234|consen 336 YPEEFALRDKDKYRYRYPGGESYSDLVQRLEPVIMELERQEN-VLVITHQAVIRCLLAYFLNCSPVELPYLTVPLHTVIK 414 (438)
T ss_pred CchhhhhccCCcceeecCCCCCHHHHHHhhhhHhHhhhhccc-EEEEecHHHHHHHHHHHhcCCHhhcccccccceeEEE
Confidence 999999999999999999999999999999999999999886 9999999999999999999999999999999999999
Q ss_pred EEECCCceEEEEEecCC
Q 004941 706 IQMGVTGVQEKRYKLMD 722 (722)
Q Consensus 706 l~~~~~g~~~~r~~l~d 722 (722)
+++.++|+.+..+.+.+
T Consensus 415 l~~~~y~~~~e~~~~~~ 431 (438)
T KOG0234|consen 415 LTPDAYGTTVESIRLND 431 (438)
T ss_pred EeeccccceeEEeeccc
Confidence 99999999999888653
No 2
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=100.00 E-value=2.1e-65 Score=599.51 Aligned_cols=388 Identities=29% Similarity=0.533 Sum_probs=343.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 398 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~ 398 (722)
++++|+|+||||+||||+|++|+++|+|.++++++|+.|+||+...+. ...++.+.+.+..+ .+++..+++|+.+|
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~--~~~~~~~~~~~~~e--~~~~~~~~~d~~~~ 289 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERR--GGAVSSPTGAAEVE--FRIAKAIAHDMTTF 289 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccC--CCCcCCCCCHHHHH--HHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999976432 12334444443333 46788888899999
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCC----ceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 004941 399 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGN----CKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 473 (722)
Q Consensus 399 l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~----~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~ 473 (722)
+.+.|.++|+|+||.++.+|..+.+. .+.+ ++|+|||++|++.+.+++|+.+++...|+ +++++.++|++
T Consensus 290 v~~~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~-----~~e~~~~~~~~ 364 (664)
T PTZ00322 290 ICKTDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPG-----APEDFVDRYYE 364 (664)
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHH
Confidence 99888999999999999999887766 4444 48999999999999999999888776664 47999999999
Q ss_pred HHHhhhcccccCCC----C-CeEEEeecccCCccceeeeccccccCCceeEEeeccCCCCccEEEecccccccccCCCcC
Q 004941 474 RLANYEKVYEPVDE----G-SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIG 548 (722)
Q Consensus 474 Ri~~y~~~yEpl~e----~-~yik~i~~~~~~g~~~~~~~i~gyL~~riv~~L~n~~~~~~~IyLvRHGes~~n~~~~~~ 548 (722)
|++.|+.+||+++. + +|||+ +. |++|.+|+|+|||++||+|||||+|+.+|+|||+|||||.+|..++++
T Consensus 365 ~~~~~~~~Ye~~~~~~d~~~~~ik~-~~----g~~~~~~~i~g~l~~~i~~~l~n~~~~~m~i~LiRHGeT~~n~~~r~~ 439 (664)
T PTZ00322 365 VIEQLEAVYKSLNPVTDCDLTYIRI-ED----TQTFSLNNISGWMPSRLAYMLHNLNPTPMNLYLTRAGEYVDLLSGRIG 439 (664)
T ss_pred HHHHHHhhcccCCccccCCCceEEE-ec----CcEEEEeccccccchhhheeeeeeccCCceEEEEecccchhhhcCccC
Confidence 99999999999873 2 89996 54 899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc--------------------CCCccccccccc
Q 004941 549 GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA--------------------GFPKIQWRALDE 608 (722)
Q Consensus 549 GD~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~--------------------g~~v~~~~~L~E 608 (722)
||+|||+.|++||++++++|.... ...++.|||||++||+|||+++. ++++..++.|+|
T Consensus 440 Gd~pLt~~G~~qA~~l~~~l~~~~-~~~~~~V~sSpl~Ra~~TA~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~L~E 518 (664)
T PTZ00322 440 GNSRLTERGRAYSRALFEYFQKEI-STTSFTVMSSCAKRCTETVHYFAEESILQQSTASAASSQSPSLNCRVLYFPTLDD 518 (664)
T ss_pred CCCccCHHHHHHHHHHHHHHHhcc-CCCCcEEEcCCcHHHHHHHHHHHhccccccccccccccccccccccccchhhhCc
Confidence 999999999999999999886431 23467999999999999998882 345678899999
Q ss_pred ccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHH-HHHHHHHHHHHhCCCcEEEEeCHHHHHHHHHHHhC
Q 004941 609 INAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVI-QRLEPVIIELERQRAPVVVISHQAVLRALYAYFAD 687 (722)
Q Consensus 609 i~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~-~Rl~~~l~eL~~~~~~VLIVSHg~vIr~Ll~~l~g 687 (722)
+++|.|||++++++.+.||+.+..|..+++.+++|+|||+.|+. +|+++++.++.+..++|||||||++||++++|+++
T Consensus 519 i~fG~wEG~t~~ei~~~~p~~~~~~~~d~~~~~~P~GES~~d~~~~R~~~~i~~l~~~~~~ilvVsHg~vir~ll~~~~~ 598 (664)
T PTZ00322 519 INHGDCEGQLLSDVRRTMPNTLQSMKADPYYTAWPNGECIHQVFNARLEPHIHDIQASTTPVLVVSHLHLLQGLYSYFVT 598 (664)
T ss_pred CCCcccCCCCHHHHHHhCcHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHHHHHHHHccCCCEEEEeCcHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999976 79999999998877899999999999999999999
Q ss_pred C-----CCCCCCCcccCCcEEEEEEECCCceEEEEEecC
Q 004941 688 R-----PLKEIPHIETPLHTIIEIQMGVTGVQEKRYKLM 721 (722)
Q Consensus 688 ~-----~~~~~~~l~~p~~sI~el~~~~~g~~~~r~~l~ 721 (722)
. ++..++.+.++++++++|++..++.....+++.
T Consensus 599 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~l~ 637 (664)
T PTZ00322 599 DGDNIVAPQNAYKIDIPFEHVIKIRMVGFNRVAELIDLS 637 (664)
T ss_pred CCccccCcccCceeeccCCcEEEEEEeccCceEEEEech
Confidence 5 678888999999999999999899988888874
No 3
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=100.00 E-value=2e-51 Score=418.63 Aligned_cols=212 Identities=56% Similarity=0.955 Sum_probs=170.5
Q ss_pred ccCCC-CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 004941 312 MLGPK-EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAAL 390 (722)
Q Consensus 312 ~~~~~-~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~ 390 (722)
++++. +.++++|+||||||+|||++|++|++||.|.|+++++||.|+|||...+...+..||++.++++.+.++++|..
T Consensus 3 ~~~~~~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~ 82 (222)
T PF01591_consen 3 ESGRLFHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKE 82 (222)
T ss_dssp ----------EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHH
T ss_pred cccccCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHH
Confidence 44555 67899999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 004941 391 AMEDMISWMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGL 468 (722)
Q Consensus 391 ~l~d~~~~l~-~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~ 468 (722)
+|+||++||. ++|+++|+||||.++++|+.+.+. .+.+++++|||++|+|++++++||+.++..+|||.++ ++++|+
T Consensus 83 ~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~-~~e~A~ 161 (222)
T PF01591_consen 83 ALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGM-DPEEAI 161 (222)
T ss_dssp HHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS--HHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccC-CHHHHH
Confidence 9999999999 779999999999999999999988 7789999999999999999999999999888999999 999999
Q ss_pred HHHHHHHHhhhcccccCCC---C--CeEEEeecccCCccceeeeccccccCCceeEEeeccCCCC
Q 004941 469 QDFKNRLANYEKVYEPVDE---G--SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTP 528 (722)
Q Consensus 469 ~df~~Ri~~y~~~yEpl~e---~--~yik~i~~~~~~g~~~~~~~i~gyL~~riv~~L~n~~~~~ 528 (722)
+||++||+.|+++||||++ + +|||+||+ |++|++|+|+|||++||||||||+|++|
T Consensus 162 ~Df~~RI~~Ye~~YEpl~~e~d~~lsyIKiin~----g~~v~~n~i~GyL~srIv~~LmNlh~~P 222 (222)
T PF01591_consen 162 EDFKKRIEHYEKVYEPLDEEEDEDLSYIKIINV----GEKVIVNNISGYLQSRIVFYLMNLHIKP 222 (222)
T ss_dssp HHHHHHHHHHHTT-----TTTTTTSEEEEEETT----TTEEEEE---SHHHHHHHHHHTT---S-
T ss_pred HHHHHHHHhhcccccccccccccCceEEEEEcC----CceEEEecccCEeHHHHHHHHhhcCCCC
Confidence 9999999999999999992 2 99999999 9999999999999999999999999875
No 4
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=100.00 E-value=1.3e-33 Score=284.57 Aligned_cols=187 Identities=24% Similarity=0.256 Sum_probs=170.3
Q ss_pred ccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cCCCcccc
Q 004941 529 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 603 (722)
Q Consensus 529 ~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g~~v~~~ 603 (722)
|+||||||||+.+|..+++.| |.|||+.|++||+++++.|. ..+++.|||||++||+|||+++ .++++.++
T Consensus 1 ~~i~lvRHG~t~~n~~~~~~G~~d~pLt~~G~~Qa~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 76 (199)
T PRK15004 1 MRLWLVRHGETQANVDGLYSGHAPTPLTARGIEQAQNLHTLLR----DVPFDLVLCSELERAQHTARLVLSDRQLPVHII 76 (199)
T ss_pred CeEEEEeCCCCccccCCcEeCCCCCCcCHHHHHHHHHHHHHHh----CCCCCEEEECchHHHHHHHHHHHhcCCCCceeC
Confidence 579999999999999988888 99999999999999998775 4578999999999999999999 56788899
Q ss_pred cccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCcEEEEeCHHHHHHH
Q 004941 604 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRAL 681 (722)
Q Consensus 604 ~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~--~~~VLIVSHg~vIr~L 681 (722)
+.|+|+++|.|+|++.+++...+|+.+..|..++....+|+|||+.|+.+|+..++.++.+. +++|||||||++|+++
T Consensus 77 ~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~l~~l~~~~~~~~iliVsHg~~i~~l 156 (199)
T PRK15004 77 PELNEMFFGDWEMRHHRDLMQEDAENYAAWCNDWQHAIPTNGEGFQAFSQRVERFIARLSAFQHYQNLLIVSHQGVLSLL 156 (199)
T ss_pred hhheeCCCcccCCCCHHHHHHHCHHHHHHHHhChhhcCCCCCcCHHHHHHHHHHHHHHHHHhCCCCeEEEEcChHHHHHH
Confidence 99999999999999999999999999999998888888999999999999999999999764 5789999999999999
Q ss_pred HHHHhCCCCCCCCCcccCCcEEEEEEECCCceEEEEEe
Q 004941 682 YAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYK 719 (722)
Q Consensus 682 l~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~~~r~~ 719 (722)
++++++.+.+.++.+.+++++++.|+++..++....++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n 194 (199)
T PRK15004 157 IARLLGMPAEAMWHFRVEQGCWSAIDINQGFATLRVLN 194 (199)
T ss_pred HHHHhCCCHHHHhccccCCceEEEEEecCCcEEEEEec
Confidence 99999999988888999999999999976665554443
No 5
>PRK13463 phosphatase PhoE; Provisional
Probab=100.00 E-value=1.4e-33 Score=285.65 Aligned_cols=188 Identities=23% Similarity=0.346 Sum_probs=169.0
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cCCCccc
Q 004941 528 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 602 (722)
Q Consensus 528 ~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g~~v~~ 602 (722)
+++||||||||+.+|..++++| |+|||+.|++||+.+++.|. ..+++.|||||+.||+|||+++ .+.++.+
T Consensus 2 ~~~i~lvRHG~t~~n~~~~~~G~~d~~Lt~~G~~Qa~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 77 (203)
T PRK13463 2 KTTVYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERMK----DLSIHAIYSSPSERTLHTAELIKGERDIPIIA 77 (203)
T ss_pred ceEEEEEeCCCCccchhCcccCCCCCCcCHHHHHHHHHHHHHhc----CCCCCEEEECCcHHHHHHHHHHHhcCCCCceE
Confidence 3689999999999999999988 99999999999999998765 4578999999999999999998 4678899
Q ss_pred ccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCcEEEEeCHHHHHH
Q 004941 603 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRA 680 (722)
Q Consensus 603 ~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~--~~~VLIVSHg~vIr~ 680 (722)
++.|+|+++|.|+|++.+++.+.||+.+..|+.++..+++|+|||+.++.+|+..++.++... +++|||||||++|++
T Consensus 78 ~~~l~E~~~G~~eG~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~l~~i~~~~~~~~vlvVsHg~~ir~ 157 (203)
T PRK13463 78 DEHFYEINMGIWEGQTIDDIERQYPDDIQLFWNEPHLFQSTSGENFEAVHKRVIEGMQLLLEKHKGESILIVSHAAAAKL 157 (203)
T ss_pred CcCceeCCCCccCCCcHHHHhhhCHHHHHHHHhChhccCCCCCeEHHHHHHHHHHHHHHHHHhCCCCEEEEEeChHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998653 568999999999999
Q ss_pred HHHHHhCCCCCCCCCc-ccCCcEEEEEEECCCceEEEEEe
Q 004941 681 LYAYFADRPLKEIPHI-ETPLHTIIEIQMGVTGVQEKRYK 719 (722)
Q Consensus 681 Ll~~l~g~~~~~~~~l-~~p~~sI~el~~~~~g~~~~r~~ 719 (722)
+++++++.+.+..+.+ .+++++++.+++...++....++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n 197 (203)
T PRK13463 158 LVGHFAGIEIENVWDDPFMHSASLSIIEFEDGKGEVKQFA 197 (203)
T ss_pred HHHHHhCCCHHHHhhccCccCceEEEEEEeCCcEEEEEec
Confidence 9999999998876665 36889999898876666666554
No 6
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=9.1e-34 Score=292.07 Aligned_cols=187 Identities=22% Similarity=0.272 Sum_probs=164.1
Q ss_pred ccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc---C---CCc
Q 004941 529 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---G---FPK 600 (722)
Q Consensus 529 ~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~---g---~~v 600 (722)
++|||||||||.+|..++++| |.|||+.|++||+++++.|... ..+++.|||||+.||+|||+.|. + .++
T Consensus 2 ~~l~LVRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpL~Ra~qTA~~i~~~~~~~~~~~ 79 (228)
T PRK14116 2 AKLVLIRHGQSEWNLSNQFTGWVDVDLSEKGVEEAKKAGRLIKEA--GLEFDQAYTSVLTRAIKTLHYALEESDQLWIPE 79 (228)
T ss_pred CEEEEEeCCCCCCccccCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCcCCCCc
Confidence 689999999999999999999 9999999999999999988642 34789999999999999999982 2 567
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCc------------------------CCCCCCCCCCHHHHHHHH
Q 004941 601 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQRL 655 (722)
Q Consensus 601 ~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d~------------------------~~~r~P~gES~~dv~~Rl 655 (722)
..++.|+|+++|.|||++++++.+.+|+. +..|..+. ..+++|+|||+.++.+|+
T Consensus 80 ~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgGEs~~~~~~Rv 159 (228)
T PRK14116 80 TKTWRLNERHYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLDADDEGSAAKDRRYANLDPRIIPGGENLKVTLERV 159 (228)
T ss_pred ccCcccccccchhhcCCCHHHHHHHhhhhHHHHHhhcccccCcccccccccccccchhhhccCccCCCCCCCHHHHHHHH
Confidence 78999999999999999999999999986 55565431 134689999999999999
Q ss_pred HHHHHHHHh----CCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceEEEE
Q 004941 656 EPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKR 717 (722)
Q Consensus 656 ~~~l~eL~~----~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~~~r 717 (722)
.+++.++.. .+++|||||||++|+++++++++.+.+.++.+.+++++++.|+++..+..+.+
T Consensus 160 ~~~l~~~i~~~~~~~~~vlvVsHg~vir~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (228)
T PRK14116 160 IPFWEDHIAPDLLDGKNVIIAAHGNSLRALTKYIENISDEDIMNLEMATGEPVVYDFDEKLNVVSK 225 (228)
T ss_pred HHHHHHHHHHhhcCCCeEEEEcChHHHHHHHHHHhCCCHHHHHhccCCCCCeEEEEECCCCCcccc
Confidence 999998642 36789999999999999999999999999999999999999999887766544
No 7
>PRK01112 phosphoglyceromutase; Provisional
Probab=100.00 E-value=5.6e-33 Score=286.12 Aligned_cols=186 Identities=26% Similarity=0.247 Sum_probs=167.7
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc---------
Q 004941 528 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA--------- 596 (722)
Q Consensus 528 ~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~--------- 596 (722)
|++||||||||+.+|..++++| |.+||+.|++||++++++|. ..+++.|||||++||+|||+.+.
T Consensus 1 M~~L~LvRHGqt~~n~~~~~~G~~D~~Lte~G~~Qa~~l~~~L~----~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~ 76 (228)
T PRK01112 1 MALLILLRHGQSVWNAKNLFTGWVDIPLSQQGIAEAIAAGEKIK----DLPIDCIFTSTLVRSLMTALLAMTNHSSGKIP 76 (228)
T ss_pred CcEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHhh----cCCCCEEEEcCcHHHHHHHHHHHHhhcccccc
Confidence 3689999999999999999998 99999999999999998876 45899999999999999999873
Q ss_pred -----------------------CCCcccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHH
Q 004941 597 -----------------------GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQ 653 (722)
Q Consensus 597 -----------------------g~~v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~ 653 (722)
.+++...+.|+|+++|.|+|++++++.+.+|+.+..++.+++.+++|+|||+.|+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~GES~~d~~~ 156 (228)
T PRK01112 77 YIVHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGKNKAETAEKFGEEQVKLWRRSYKTAPPQGESLEDTGQ 156 (228)
T ss_pred cccccccccccccccccccccccCCCeeecCccccccccccCCCCHHHHHHHCcHHHHHHHhCcCCCCCCCCCCHHHHHH
Confidence 135667899999999999999999999999988777777778889999999999999
Q ss_pred HHHHHHHHHH-h---CCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceEEEE
Q 004941 654 RLEPVIIELE-R---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKR 717 (722)
Q Consensus 654 Rl~~~l~eL~-~---~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~~~r 717 (722)
|+.+++.++. + .+++|||||||++||++++++++.+.+.++.+.+++++++.++++..+.+.++
T Consensus 157 Rv~~~l~~~~~~~~~~~~~ilVVsHg~vir~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (228)
T PRK01112 157 RTLPYFQNRILPHLQQGKNVFVSAHGNSLRSLIMDLEKLSEEEVLSLELPTGKPIVYEWTGQKFEKHK 224 (228)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhhcccCCcceEEEEECCCCcccch
Confidence 9999999752 2 46789999999999999999999999999999999999999999888877653
No 8
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=5.1e-33 Score=286.46 Aligned_cols=184 Identities=23% Similarity=0.266 Sum_probs=159.8
Q ss_pred ccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc------CCCc
Q 004941 529 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFPK 600 (722)
Q Consensus 529 ~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~------g~~v 600 (722)
++|||||||||.+|..++++| |.|||+.|++||++++++|... ..+++.|||||++||+|||+++. +.++
T Consensus 2 ~~l~LvRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpL~Ra~~TA~~i~~~~~~~~~~~ 79 (228)
T PRK14119 2 PKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVREN--NIAIDVAFTSLLTRALDTTHYILTESKQQWIPV 79 (228)
T ss_pred CEEEEEeCCCCCcccCCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEeCccHHHHHHHHHHHHhcccCCCCe
Confidence 689999999999999999998 9999999999999999988643 35789999999999999999982 2577
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCcC------------------------CCCCCCCCCHHHHHHHH
Q 004941 601 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQRL 655 (722)
Q Consensus 601 ~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d~~------------------------~~r~P~gES~~dv~~Rl 655 (722)
..++.|+|+++|.|||++++++.+.||+. +..|..+.. ...+|+|||+.++.+|+
T Consensus 80 ~~~~~LrE~~fG~weG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv 159 (228)
T PRK14119 80 YKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRV 159 (228)
T ss_pred eECCCccccccccccCCcHHHHHHHccHHHHHHHHcccccCCCcccccccccccccccccccccccCCCCCCHHHHHHHH
Confidence 88999999999999999999999999986 455654311 12368999999999999
Q ss_pred HHHHHHHHh----CCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceE
Q 004941 656 EPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQ 714 (722)
Q Consensus 656 ~~~l~eL~~----~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~ 714 (722)
.+++.++.. .+++|||||||++|+++++++++.+.+.++.+.+++|+++.++.+...-.
T Consensus 160 ~~~l~~~~~~~~~~~~~vlvVsHg~vir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (228)
T PRK14119 160 IPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEV 222 (228)
T ss_pred HHHHHHHHHhhccCCCeEEEEeChHHHHHHHHHHhCCCHHHHhhcCCCCCceEEEEECCCCce
Confidence 999998743 35789999999999999999999999888899999999999998765433
No 9
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=8e-33 Score=285.41 Aligned_cols=189 Identities=22% Similarity=0.200 Sum_probs=164.2
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc------CCC
Q 004941 528 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFP 599 (722)
Q Consensus 528 ~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~------g~~ 599 (722)
|++|||||||||.+|..++++| |.|||+.|++||++++++|... ..+++.|||||++||+|||+++. +.+
T Consensus 1 m~~l~LvRHG~t~~n~~~~~qG~~D~~Lt~~G~~qa~~~~~~l~~~--~~~~~~i~sSpl~Ra~~TA~~i~~~~~~~~~~ 78 (230)
T PRK14117 1 MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEA--GIEFDLAFTSVLKRAIKTTNLALEASDQLWVP 78 (230)
T ss_pred CCEEEEEeCccccCcccCCcCCCCCCCcCHHHHHHHHHHHHHHHHc--CCCCCEEEECCcHHHHHHHHHHHHhcccCCCC
Confidence 3689999999999999999999 9999999999999999988643 35789999999999999999872 367
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcC------------------------cCCCCCCCCCCHHHHHHH
Q 004941 600 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKD------------------------KLRYRYPRGESYLDVIQR 654 (722)
Q Consensus 600 v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d------------------------~~~~r~P~gES~~dv~~R 654 (722)
+..++.|+|+++|.|||++++++.+.||+. +..|..+ ...+++|+|||+.++.+|
T Consensus 79 ~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~R 158 (230)
T PRK14117 79 VEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYSAHTDRRYASLDDSVIPDAENLKVTLER 158 (230)
T ss_pred ceeCCccccccchhhcCCCHHHHHHHccHHHHHHHhcccccCCCcccccccccccccccccccccCCCCCCCCHHHHHHH
Confidence 888999999999999999999999999986 4455432 123467999999999999
Q ss_pred HHHHHHHHH--h--CCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceEEEEE
Q 004941 655 LEPVIIELE--R--QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRY 718 (722)
Q Consensus 655 l~~~l~eL~--~--~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~~~r~ 718 (722)
+.+++.++. . .+++|||||||++|+++++++++.+....+.+.+++++++.|++.........|
T Consensus 159 v~~~l~~~~~~~~~~~~~vlvVsHg~~ir~ll~~~lg~~~~~~~~~~~~n~s~~~i~~~~~~~~~~~~ 226 (230)
T PRK14117 159 ALPFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKGLSDDEIMDVEIPNFPPLVFEFDEKLNVVKEY 226 (230)
T ss_pred HHHHHHHHHHhhccCCCEEEEEeChHHHHHHHHHHhCcCHHHHhhcCCCCceEEEEEECCCCceeecc
Confidence 999999974 2 247899999999999999999999998888899999999999997776666654
No 10
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=2.2e-32 Score=281.62 Aligned_cols=181 Identities=20% Similarity=0.234 Sum_probs=158.0
Q ss_pred ccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc------CCCc
Q 004941 529 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFPK 600 (722)
Q Consensus 529 ~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~------g~~v 600 (722)
|+|||||||||.+|..++++| |.|||+.|++||+++++.|... ..+++.|||||++||+|||+.|. +.++
T Consensus 1 m~l~LvRHG~t~~n~~~~~~G~~d~~Lt~~G~~qa~~~~~~l~~~--~~~~d~i~sSpl~Ra~~TA~~i~~~~~~~~~~~ 78 (227)
T PRK14118 1 MELVFIRHGFSEWNAKNLFTGWRDVNLTERGVEEAKAAGKKLKEA--GYEFDIAFTSVLTRAIKTCNIVLEESNQLWIPQ 78 (227)
T ss_pred CEEEEEecCCCccccccCcCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEEeChHHHHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999998 9999999999999999988753 34789999999999999999992 2567
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCc------------------------CCCCCCCCCCHHHHHHHH
Q 004941 601 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQRL 655 (722)
Q Consensus 601 ~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d~------------------------~~~r~P~gES~~dv~~Rl 655 (722)
..++.|+|+++|.|||++++++.+.+|+. +..|..+. ..+.+|+|||+.++.+|+
T Consensus 79 ~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~Rv 158 (227)
T PRK14118 79 VKNWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDPNSAHNDRRYAHLPADVVPDAENLKVTLERV 158 (227)
T ss_pred ecCCccccccCccccCCcHHHHHHHhhHHHHHHHHhccccCCCccccccccccccchhhccCcCCCCCCCCCHHHHHHHH
Confidence 78889999999999999999999999976 44454321 124579999999999999
Q ss_pred HHHHHHHHh----CCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCC
Q 004941 656 EPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT 711 (722)
Q Consensus 656 ~~~l~eL~~----~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~ 711 (722)
.+++.++.. .+++|||||||++|++|++++++.+...++.+.+++++++.|+.+..
T Consensus 159 ~~~l~~~~~~~~~~~~~vlvVsHggvir~ll~~~l~~~~~~~~~~~i~~~s~~~~~~~~~ 218 (227)
T PRK14118 159 LPFWEDQIAPALLSGKRVLVAAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYKLDDN 218 (227)
T ss_pred HHHHHHHHhhhhcCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhcccCCCCceEEEEECCC
Confidence 999988643 35789999999999999999999999888899999999999998655
No 11
>PRK01295 phosphoglyceromutase; Provisional
Probab=100.00 E-value=3.8e-32 Score=275.88 Aligned_cols=182 Identities=25% Similarity=0.295 Sum_probs=160.9
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cC---CC
Q 004941 528 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 599 (722)
Q Consensus 528 ~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g---~~ 599 (722)
+++||||||||+.+|..+.++| |.|||+.|++||++++++|... ..+++.|||||+.||+|||++| .+ ++
T Consensus 2 ~~~i~LVRHGet~~n~~~~~~G~~d~~Lt~~G~~qA~~~~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 79 (206)
T PRK01295 2 SRTLVLVRHGQSEWNLKNLFTGWRDPDLTEQGVAEAKAAGRKLKAA--GLKFDIAFTSALSRAQHTCQLILEELGQPGLE 79 (206)
T ss_pred CceEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEeCCcHHHHHHHHHHHHHcCCCCCC
Confidence 4789999999999999999888 9999999999999999988643 4578999999999999999999 33 67
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHH-HHHHh---CCCcEEEEeCH
Q 004941 600 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVI-IELER---QRAPVVVISHQ 675 (722)
Q Consensus 600 v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l-~eL~~---~~~~VLIVSHg 675 (722)
+.+++.|+|+++|.|+|++.+++++.+|+.+..++.+++.+++|+|||+.|+.+|+.+++ ..+.. .+++|||||||
T Consensus 80 ~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVtHg 159 (206)
T PRK01295 80 TIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVLPYYLQEILPRVLRGERVLVAAHG 159 (206)
T ss_pred eEECCcccccccccccCCcHHHHHHHchHHHHHHhhcccCCCCcCCCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEcCh
Confidence 888999999999999999999999999987766666667889999999999999999975 45532 35789999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCC
Q 004941 676 AVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT 711 (722)
Q Consensus 676 ~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~ 711 (722)
++|+++++++++.+.+.++.+.+.++..+.+..+..
T Consensus 160 ~~ir~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (206)
T PRK01295 160 NSLRALVMVLDGLTPEQILKLELATGVPIVYRLNAD 195 (206)
T ss_pred HHHHHHHHHHhCCCHHHHhhcCCCCCCcEEEEecCC
Confidence 999999999999999999999999998877777544
No 12
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=100.00 E-value=7.3e-32 Score=272.84 Aligned_cols=184 Identities=25% Similarity=0.277 Sum_probs=163.6
Q ss_pred cEEEecccccccccCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cCCCcccc
Q 004941 530 PILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 603 (722)
Q Consensus 530 ~IyLvRHGes~~n~~~~~~G---D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g~~v~~~ 603 (722)
+||||||||+.+|..++++| |.|||+.|++||++++++|. ..+++.|||||+.||+|||+++ .+.++..+
T Consensus 1 ~i~lvRHG~t~~n~~~~~~g~~~d~~Lt~~G~~qa~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 76 (204)
T TIGR03848 1 TVILVRHGRSTANTAGTLAGRTPGVDLDERGREQAAALAERLA----DLPIAAIVSSPLERCRETAEPIAEARGLPPRVD 76 (204)
T ss_pred CEEEEeCCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEeCcHHHHHHHHHHHHHhcCCCceEC
Confidence 48999999999999888887 48999999999999998875 4589999999999999999999 57789999
Q ss_pred cccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHh-------CCCcEEEEeCHH
Q 004941 604 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER-------QRAPVVVISHQA 676 (722)
Q Consensus 604 ~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~-------~~~~VLIVSHg~ 676 (722)
+.|+|+++|.|+|++++++.+. ..+..|..++..+.+|+|||+.++..|+.+++.++.. .+++|||||||+
T Consensus 77 ~~L~E~~~G~~eG~~~~e~~~~--~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~ 154 (204)
T TIGR03848 77 ERLGECDYGDWTGRELKELAKE--PLWPVVQAHPSAAVFPGGESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGD 154 (204)
T ss_pred cccccCCCCeeCCcCHHHHhCc--HHHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCh
Confidence 9999999999999999998754 3566777788888999999999999999999998753 246799999999
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceEEEEEe
Q 004941 677 VLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYK 719 (722)
Q Consensus 677 vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~~~r~~ 719 (722)
+|+++++++++.+.+.++.+.++++++++|+....++....++
T Consensus 155 ~ir~ll~~~lg~~~~~~~~~~~~n~sit~l~~~~~~~~~~~~n 197 (204)
T TIGR03848 155 VIKSVLADALGMHLDLFQRIVVDPCSVSVVRYTPLRPFVLRVN 197 (204)
T ss_pred HHHHHHHHHhCCCHHHhheeeeCCCeEEEEEEeCCceEEEEee
Confidence 9999999999999988889999999999999987777665554
No 13
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=99.98 E-value=8.3e-32 Score=280.73 Aligned_cols=184 Identities=24% Similarity=0.293 Sum_probs=160.2
Q ss_pred CCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc------C
Q 004941 526 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------G 597 (722)
Q Consensus 526 ~~~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~------g 597 (722)
|++++||||||||+.+|..++++| |.|||+.|++||+++++.|... ...++.|||||++||+|||+.+. +
T Consensus 2 ~~m~~i~LVRHGqt~~n~~~~~~G~~D~pLTe~G~~QA~~~a~~l~~~--~~~~~~IysSpl~Ra~qTA~~i~~~~~~~~ 79 (249)
T PRK14120 2 MMTYTLVLLRHGESEWNAKNLFTGWVDVDLTEKGEAEAKRGGELLAEA--GVLPDVVYTSLLRRAIRTANLALDAADRLW 79 (249)
T ss_pred CCCcEEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEecChHHHHHHHHHHHHhcccCC
Confidence 455889999999999999999988 9999999999999999988643 34689999999999999999982 3
Q ss_pred CCcccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCcCCC----------------------CCCCCCCHHHHHHH
Q 004941 598 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKLRY----------------------RYPRGESYLDVIQR 654 (722)
Q Consensus 598 ~~v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d~~~~----------------------r~P~gES~~dv~~R 654 (722)
.++..++.|+|+++|.|+|+++.+++++||.. +..|..++... .+|+|||+.++.+|
T Consensus 80 ~~i~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~GES~~~~~~R 159 (249)
T PRK14120 80 IPVRRSWRLNERHYGALQGKDKAETKAEYGEEQFMLWRRSYDTPPPPIEDGSEYSQDNDPRYADLGVGPRTECLKDVVAR 159 (249)
T ss_pred CCeEECCCcccccccccCCCCHHHHHHHccHHHHHHHHhccccCCCccccccccccccCccccccCCCCCCCCHHHHHHH
Confidence 57888899999999999999999999999974 77776643221 24899999999999
Q ss_pred HHHHHHHH--H--hCCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCC
Q 004941 655 LEPVIIEL--E--RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT 711 (722)
Q Consensus 655 l~~~l~eL--~--~~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~ 711 (722)
+..+|.++ . ..+++|||||||++||++++++++.+.+..+.+.+++++++.|++...
T Consensus 160 v~~~l~~~~~~~~~~~~~iliVsHggvir~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 220 (249)
T PRK14120 160 FLPYWEDDIVPDLKAGKTVLIAAHGNSLRALVKHLDGISDEDIAGLNIPTGIPLVYELDED 220 (249)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeCHHHHHHHHHHHhCCCHHHhheeccCCCceEEEEECCC
Confidence 99999874 2 245789999999999999999999999999999999999999998653
No 14
>PRK03482 phosphoglycerate mutase; Provisional
Probab=99.98 E-value=1.3e-31 Score=273.13 Aligned_cols=179 Identities=23% Similarity=0.244 Sum_probs=156.8
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cCCCccc
Q 004941 528 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 602 (722)
Q Consensus 528 ~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g~~v~~ 602 (722)
|++||||||||+.+|..+.+.| |.|||+.|++||+.++++|. ..+++.|||||+.||+|||+++ .+.++.+
T Consensus 1 m~~i~lvRHG~t~~n~~~~~~g~~d~~Lt~~G~~qA~~~~~~l~----~~~~~~I~sSpl~Ra~qTA~~i~~~~~~~~~~ 76 (215)
T PRK03482 1 MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVAERAK----ELGITHIISSDLGRTRRTAEIIAQACGCDIIF 76 (215)
T ss_pred CcEEEEEeCCCcccccccccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEECCcHHHHHHHHHHHHhcCCCeeE
Confidence 3789999999999999888877 99999999999999998875 4478999999999999999998 5778889
Q ss_pred ccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCcEEEEeCHHHHHH
Q 004941 603 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRA 680 (722)
Q Consensus 603 ~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~--~~~VLIVSHg~vIr~ 680 (722)
++.|+|+++|.|+|++++++...++.....+...+..+++|+|||+.++..|+..++.++... +++|||||||++|++
T Consensus 77 ~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~Rv~~~l~~~~~~~~~~~vliVsHg~~i~~ 156 (215)
T PRK03482 77 DPRLRELNMGVLEKRHIDSLTEEEEGWRRQLVNGTVDGRIPEGESMQELSDRMHAALESCLELPQGSRPLLVSHGIALGC 156 (215)
T ss_pred ChhccccCCccccCCcHHHHHhhHHHHHHhhhcCCCccCCCCCccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHH
Confidence 999999999999999999987655433333334456678899999999999999999998653 468999999999999
Q ss_pred HHHHHhCCCCCCCCCcccCCcEEEEEEECC
Q 004941 681 LYAYFADRPLKEIPHIETPLHTIIEIQMGV 710 (722)
Q Consensus 681 Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~ 710 (722)
+++++++.+.+....+.+++|+++.|++..
T Consensus 157 l~~~l~~~~~~~~~~~~~~n~sis~~~~~~ 186 (215)
T PRK03482 157 LVSTILGLPAWAERRLRLRNCSISRVDYQE 186 (215)
T ss_pred HHHHHhCCChhhhhccCCCCcEEEEEEEeC
Confidence 999999999988888899999999998864
No 15
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=99.98 E-value=1.1e-31 Score=271.75 Aligned_cols=183 Identities=33% Similarity=0.452 Sum_probs=170.9
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cCCCccc
Q 004941 528 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 602 (722)
Q Consensus 528 ~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g~~v~~ 602 (722)
+++||||||||+.+|..++++| |+|||+.|++||+.+++.|... ...++.||+||+.||+|||+++ .+.++..
T Consensus 2 ~~~i~lvRHGqt~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~--~~~~~~i~sS~l~Ra~~TA~~~a~~~~~~~~~ 79 (208)
T COG0406 2 MMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAAR--DIGFDAIYSSPLKRAQQTAEPLAEELGLPLEV 79 (208)
T ss_pred ceEEEEEecCCccccccccccCCCCCCCCHHHHHHHHHHHHHHhhc--CCCCCEEEECchHHHHHHHHHHHHhcCCCcee
Confidence 5789999999999999999988 9999999999999999988754 5689999999999999999999 5677889
Q ss_pred ccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhCCC--cEEEEeCHHHHHH
Q 004941 603 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRA--PVVVISHQAVLRA 680 (722)
Q Consensus 603 ~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~~~--~VLIVSHg~vIr~ 680 (722)
++.|+|+++|.|+|++.+++.+.+|.++..|..+++.+.+|+|||+.++.+|+.+++.++.+... +|||||||++|++
T Consensus 80 ~~~l~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg~~ir~ 159 (208)
T COG0406 80 DDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPPGGESLADVSKRVVAALAELLRSPPGNNVLVVSHGGVIRA 159 (208)
T ss_pred cCCeeEeecccccCCcHHHHHHhCHHHHHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988633 6999999999999
Q ss_pred HHHHHhCCCCCCCCCcccCCcEEEEEEECCCc
Q 004941 681 LYAYFADRPLKEIPHIETPLHTIIEIQMGVTG 712 (722)
Q Consensus 681 Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g 712 (722)
|++++++.+....+.+.+++++++.+.+...+
T Consensus 160 l~~~~~~~~~~~~~~~~~~~~si~~l~~~~~~ 191 (208)
T COG0406 160 LLAYLLGLDLEELWRLRLDNASVTVLEFDDGR 191 (208)
T ss_pred HHHHhcCCChhhHHhcCCCCceEEEEEeeCCC
Confidence 99999999888778899999999999998876
No 16
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=99.98 E-value=5.5e-32 Score=266.79 Aligned_cols=170 Identities=29% Similarity=0.410 Sum_probs=156.8
Q ss_pred EEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cCCCcccccc
Q 004941 531 ILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWRA 605 (722)
Q Consensus 531 IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g~~v~~~~~ 605 (722)
||||||||+.+|..+++ | |+|||+.|++||+.+++.|. ..+++.|||||+.||+|||+++ .+.++.+++.
T Consensus 1 i~lvRHg~t~~n~~~~~-g~~d~~Lt~~G~~qa~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~ 75 (177)
T TIGR03162 1 LYLIRHGETDVNAGLCY-GQTDVPLAEKGAEQAAALREKLA----DVPFDAVYSSPLSRCRELAEILAERRGLPIIKDPR 75 (177)
T ss_pred CEEEeCCCCccCCCcee-CCCCCCcChhHHHHHHHHHHHhc----CCCCCEEEECchHHHHHHHHHHHhhcCCCceECCc
Confidence 69999999999998887 5 99999999999999998775 4689999999999999999999 4678899999
Q ss_pred cccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCcEEEEeCHHHHHHHHH
Q 004941 606 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRALYA 683 (722)
Q Consensus 606 L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~--~~~VLIVSHg~vIr~Ll~ 683 (722)
|+|+++|.|+|++.+++.+.+| .+..|..++..+.+|+|||+.++.+|+..++.++.+. +++|||||||++|+++++
T Consensus 76 L~E~~~G~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~l~~~~~~~~vlvVsHg~~i~~l~~ 154 (177)
T TIGR03162 76 LREMDFGDWEGRSWDEIPEAYP-ELDAWAADWQHARPPGGESFADFYQRVSEFLEELLKAHEGDNVLIVTHGGVIRALLA 154 (177)
T ss_pred cccccCCccCCCCHHHHHHhCH-HHHHHHhCcccCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHH
Confidence 9999999999999999999998 6778888888889999999999999999999999764 578999999999999999
Q ss_pred HHhCCCCCCCCCcccCCcEEEEE
Q 004941 684 YFADRPLKEIPHIETPLHTIIEI 706 (722)
Q Consensus 684 ~l~g~~~~~~~~l~~p~~sI~el 706 (722)
++++.+++.++.+.++++++++|
T Consensus 155 ~~~~~~~~~~~~~~~~n~~i~~l 177 (177)
T TIGR03162 155 HLLGLPLEQWWSFDVEYGSITLI 177 (177)
T ss_pred HHhCCCHHHHhccccCCeeEEeC
Confidence 99999999888999999999864
No 17
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=99.98 E-value=1.8e-31 Score=278.02 Aligned_cols=191 Identities=26% Similarity=0.291 Sum_probs=166.0
Q ss_pred ccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cC---CCc
Q 004941 529 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 600 (722)
Q Consensus 529 ~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g---~~v 600 (722)
|+||||||||+.+|..++++| |.|||+.|++||+.++++|... ..+++.|||||++||+|||++| .+ .++
T Consensus 1 ~~i~LVRHGqt~~n~~~~~~G~~D~pLte~G~~QA~~la~~L~~~--~~~~d~IysSpl~Ra~qTA~~i~~~~~~~~~~~ 78 (247)
T PRK14115 1 TKLVLIRHGESQWNKENRFTGWTDVDLSEKGVSEAKAAGKLLKEE--GYTFDVAYTSVLKRAIRTLWIVLDELDQMWLPV 78 (247)
T ss_pred CEEEEEECCCcccccccCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEEcCCHHHHHHHHHHHHHcCCCCCCc
Confidence 579999999999999998888 9999999999999999988643 3478999999999999999999 33 367
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCcC------------------------CCCCCCCCCHHHHHHHH
Q 004941 601 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQRL 655 (722)
Q Consensus 601 ~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d~~------------------------~~r~P~gES~~dv~~Rl 655 (722)
..++.|+|+++|.|+|++++++.+.+|+. +..|..+.. .+.+|+|||+.++..|+
T Consensus 79 ~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv 158 (247)
T PRK14115 79 EKSWRLNERHYGALQGLNKAETAAKYGDEQVKIWRRSYDVPPPALEKDDERYPGHDPRYAKLPEEELPLTESLKDTIARV 158 (247)
T ss_pred eECccccccccccccCCCHHHHHHHhhHHHHHHHhcccccCCCcccccccccccccchhhcccCCCCCCCCcHHHHHHHH
Confidence 88999999999999999999999999976 455543211 23579999999999999
Q ss_pred HHHHHHHHh----CCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceEEEEEecC
Q 004941 656 EPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYKLM 721 (722)
Q Consensus 656 ~~~l~eL~~----~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~~~r~~l~ 721 (722)
.++|.++.. .+++|||||||++|+++++++++.+...++.+.+++++++.|+++......++|-|=
T Consensus 159 ~~~l~~~i~~~~~~~~~vlvVtHggvir~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 228 (247)
T PRK14115 159 LPYWNETIAPQLKSGKRVLIAAHGNSLRALVKYLDNISDEEILELNIPTGVPLVYELDENLKPIKHYYLG 228 (247)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeChHHHHHHHHHHhCCCHHHhheeecCCCceEEEEECCCCcEeeeEecC
Confidence 999988632 357899999999999999999999999889999999999999998888777877653
No 18
>PRK13462 acid phosphatase; Provisional
Probab=99.98 E-value=2.4e-31 Score=269.52 Aligned_cols=182 Identities=23% Similarity=0.277 Sum_probs=157.7
Q ss_pred CCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCC--EEEEcChHHHHHHHHHhcCCCc-
Q 004941 526 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAA--SIWTSTLQRTILTASPIAGFPK- 600 (722)
Q Consensus 526 ~~~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~--~V~sSpl~RaiQTA~~i~g~~v- 600 (722)
..+++||||||||+.+|..+++.| |.|||+.|++||+++++.|... +++ .|||||++||+|||+.+ +.++
T Consensus 3 ~~~~~i~LvRHG~t~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~----~~~~~~i~sSpl~Ra~qTA~~i-~~~~~ 77 (203)
T PRK13462 3 VRNHRLLLLRHGETEWSKSGRHTGRTELELTETGRTQAELAGQALGEL----ELDDPLVISSPRRRALDTAKLA-GLTVD 77 (203)
T ss_pred ccccEEEEEeCCCCCcccCCCccCCCCCCCCHHHHHHHHHHHHHHHhC----CCCCCEEEECchHHHHHHHHHh-cCccc
Confidence 456899999999999999998888 9999999999999999887643 455 79999999999999988 4544
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCcEEEEeCHHHH
Q 004941 601 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVL 678 (722)
Q Consensus 601 ~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~--~~~VLIVSHg~vI 678 (722)
..++.|+|+++|.|+|+++.++.+.+|+ +..|. ..+|+|||+.++.+|+..++.++... +++|||||||++|
T Consensus 78 ~~~~~LrE~~~G~~eG~~~~ei~~~~~~-~~~~~-----~~~p~gES~~~~~~Rv~~~l~~i~~~~~~~~vliVsHg~vi 151 (203)
T PRK13462 78 EVSGLLAEWDYGSYEGLTTPQIRESEPD-WLVWT-----HGCPGGESVAQVNERADRAVALALEHMESRDVVFVSHGHFS 151 (203)
T ss_pred ccCccccccCCccccCCcHHHHHHhCch-HHhhc-----CCCCCCccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHH
Confidence 6789999999999999999999999987 33342 34589999999999999999998653 5689999999999
Q ss_pred HHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceEEEEE
Q 004941 679 RALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRY 718 (722)
Q Consensus 679 r~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~~~r~ 718 (722)
+++++++++.+....+.+.+++++++.+++.........+
T Consensus 152 r~ll~~~l~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~ 191 (203)
T PRK13462 152 RAVITRWVELPLAEGSRFAMPTASIAICGFEHGVRQLSAL 191 (203)
T ss_pred HHHHHHHhCCCHHHhhhcccCCceEEEEEeeCCceEEEee
Confidence 9999999999988888899999999999987665555444
No 19
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=99.98 E-value=2.9e-31 Score=276.21 Aligned_cols=190 Identities=26% Similarity=0.297 Sum_probs=161.7
Q ss_pred ccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cC---CCc
Q 004941 529 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 600 (722)
Q Consensus 529 ~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g---~~v 600 (722)
|+||||||||+.+|..++++| |.+||+.|++||+.++++|... ..+++.|||||++||+|||++| .+ .++
T Consensus 1 ~~l~lVRHGqt~~n~~~~~~G~~D~~Lt~~G~~QA~~la~~L~~~--~~~~d~iysSpl~Ra~qTA~ii~~~~~~~~~~i 78 (245)
T TIGR01258 1 MKLVLVRHGESEWNALNLFTGWVDVKLSEKGQQEAKRAGELLKEE--GYEFDVAYTSLLKRAIHTLNIALDELDQLWIPV 78 (245)
T ss_pred CEEEEEeCCCcCccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEEcChHHHHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999988 9999999999999999988643 3468999999999999999999 23 567
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCcC------------------CC------CCCCCCCHHHHHHHH
Q 004941 601 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------RY------RYPRGESYLDVIQRL 655 (722)
Q Consensus 601 ~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d~~------------------~~------r~P~gES~~dv~~Rl 655 (722)
...+.|+|+++|.|+|++++++.+.||.. +..|..+.. .| .+|+|||+.++.+|+
T Consensus 79 ~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~d~~y~~~~~~~~p~GES~~~~~~Rv 158 (245)
T TIGR01258 79 KKSWRLNERHYGALQGLNKAETAAKYGEEQVNIWRRSFDVPPPPIDESDPRSPHNDPRYAHLDPKVLPLTESLKDTIARV 158 (245)
T ss_pred eeCcccccccCCCCcCCCHHHHHHHhhHHHHHHHHhhccCCCCcCCcccccccccChhhhcCCcccCCCCCCHHHHHHHH
Confidence 77899999999999999999999999975 444543211 12 378999999999999
Q ss_pred HHHHHHHHh----CCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceEEEEEec
Q 004941 656 EPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYKL 720 (722)
Q Consensus 656 ~~~l~eL~~----~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~~~r~~l 720 (722)
..+|.++.. .+++|||||||++|+++++++++++....+.+.+++++++.+++....-..+.|-+
T Consensus 159 ~~~l~~l~~~~~~~~~~vlvVsHg~vir~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (245)
T TIGR01258 159 LPYWNDEIAPDLLSGKRVLIVAHGNSLRALVKHLEGISDEEILELNIPTGIPLVYELDENLKPIKHYYL 227 (245)
T ss_pred HHHHHHHHhhhhcCCCEEEEEcChHHHHHHHHHHHCcCHHHHhheecCCCceEEEEECCCCCEeeeeec
Confidence 999998742 35789999999999999999999999998899999999999998666544454443
No 20
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.97 E-value=2.3e-29 Score=277.03 Aligned_cols=189 Identities=25% Similarity=0.312 Sum_probs=167.1
Q ss_pred CCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cCCCcc
Q 004941 527 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKI 601 (722)
Q Consensus 527 ~~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g~~v~ 601 (722)
++++||||||||+.+|..+++.| |.|||+.|++||+.++++|... .+++.|||||+.||+|||+.+ .+.++.
T Consensus 170 ~~~~i~LvRHGet~~n~~~~~~g~~D~~Lt~~G~~QA~~l~~~l~~~---~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~ 246 (372)
T PRK07238 170 TPTRLLLLRHGQTELSVQRRYSGRGNPELTEVGRRQAAAAARYLAAR---GGIDAVVSSPLQRARDTAAAAAKALGLDVT 246 (372)
T ss_pred CceEEEEEeCCCCCcccCCeeeCCCCCCcCHHHHHHHHHHHHHHhcc---CCCCEEEECChHHHHHHHHHHHHhcCCCcE
Confidence 45889999999999999888877 9999999999999999887532 178999999999999999999 567888
Q ss_pred cccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCcEEEEeCHHHHH
Q 004941 602 QWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLR 679 (722)
Q Consensus 602 ~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~--~~~VLIVSHg~vIr 679 (722)
+++.|+|+++|.|+|++++++.+.||..+..|..++ .+.+|+|||+.++.+|+..++.+|... +++|||||||++|+
T Consensus 247 ~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~w~~~~-~~~~p~gEs~~~~~~Rv~~~l~~l~~~~~~~~vlvVtHg~~ir 325 (372)
T PRK07238 247 VDDDLIETDFGAWEGLTFAEAAERDPELHRAWLADT-SVAPPGGESFDAVARRVRRARDRLIAEYPGATVLVVSHVTPIK 325 (372)
T ss_pred ECccceeCCCCccCCCCHHHHHHHCHHHHHHHHhCC-CCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEEChHHHH
Confidence 999999999999999999999999999999998876 578899999999999999999998653 46899999999999
Q ss_pred HHHHHHhCCCCCCCCCcccCCcEEEEEEECCCc-eEEEEEe
Q 004941 680 ALYAYFADRPLKEIPHIETPLHTIIEIQMGVTG-VQEKRYK 719 (722)
Q Consensus 680 ~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g-~~~~r~~ 719 (722)
++++++++.+...+..+.+++++++.+++...+ +....++
T Consensus 326 ~ll~~~l~~~~~~~~~~~~~~~~~s~l~~~~~~~~~~~~~n 366 (372)
T PRK07238 326 TLLRLALDAGPGVLYRLHLDLASLSIAEFYPDGPASVRLVN 366 (372)
T ss_pred HHHHHHhCCCHHHhhhcccCCceEEEEEEECCCceEEEEec
Confidence 999999999998888889999999999885443 3444444
No 21
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=99.95 E-value=1.2e-27 Score=229.12 Aligned_cols=150 Identities=38% Similarity=0.577 Sum_probs=136.1
Q ss_pred cEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cCCCccccc
Q 004941 530 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWR 604 (722)
Q Consensus 530 ~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g~~v~~~~ 604 (722)
+|||||||++.+|..+.+.+ |+|||+.|+.||+.+++.|.+. ..+++.|||||+.||+|||+.+ .+.++..++
T Consensus 1 ~i~liRHg~~~~n~~~~~~~~~d~~Lt~~G~~qA~~~~~~l~~~--~~~~~~i~~Sp~~R~~qTA~~~~~~~~~~~~~~~ 78 (158)
T PF00300_consen 1 RIYLIRHGESEFNAEGRVQGDSDPPLTERGREQARQLGEYLAER--DIQIDVIYSSPLRRCIQTAEIIAEGLGIEIIVDP 78 (158)
T ss_dssp EEEEEE-S-BHHHHTTBCGTTSSTGBEHHHHHHHHHHHHHHHHT--TSSCSEEEEESSHHHHHHHHHHHHHHTSEEEEEG
T ss_pred CEEEEECCccccccCCCcCCCCCccccHHHHHHHHhhccccccc--ccCceEEecCCcchhhhhhchhhccccccccccc
Confidence 59999999999998888777 6689999999999999998754 5689999999999999999999 468899999
Q ss_pred ccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHH---hCCCcEEEEeCHHHHHHH
Q 004941 605 ALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELE---RQRAPVVVISHQAVLRAL 681 (722)
Q Consensus 605 ~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~---~~~~~VLIVSHg~vIr~L 681 (722)
.|+|+++|.|+|++..++.+.+|..+..|..++..+++|++||+.++..|+..++.++. ..+++|||||||++|++|
T Consensus 79 ~l~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~~~~l~~~~~~~~~vliVsHg~~i~~~ 158 (158)
T PF00300_consen 79 RLREIDFGDWEGRPFDEIEEKFPDEFEAWWSDPYFYRPPGGESWEDFQQRVKQFLDELIAYKRPGENVLIVSHGGFIRAL 158 (158)
T ss_dssp GGSCCGCGGGTTSBHHHHHHHHHHHHHHHHHHTSSCGSTTSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE-HHHHHHH
T ss_pred ccccccchhhcccchhhHHhhhhcccchhhccccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHhC
Confidence 99999999999999999999999889999999999999999999999999999999998 468899999999999986
No 22
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=99.94 E-value=3.3e-26 Score=237.17 Aligned_cols=169 Identities=24% Similarity=0.309 Sum_probs=144.6
Q ss_pred cccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc---C---CCcccccccccccCC
Q 004941 541 DNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---G---FPKIQWRALDEINAG 612 (722)
Q Consensus 541 ~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~---g---~~v~~~~~L~Ei~~G 612 (722)
+|..++++| |.|||+.|++||+.+++.|... ..+++.|||||++||+|||+++. + .++..++.|+|+++|
T Consensus 1 ~N~~~~~qG~~D~pLTe~G~~QA~~l~~~L~~~--~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~L~E~~~G 78 (236)
T PTZ00123 1 WNKENRFTGWTDVPLSEKGVQEAREAGKLLKEK--GFRFDVVYTSVLKRAIKTAWIVLEELGQLHVPVIKSWRLNERHYG 78 (236)
T ss_pred CcccCceeCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCCCceeCchhhhcccc
Confidence 466677788 9999999999999999988753 45789999999999999999992 2 467789999999999
Q ss_pred cCCCCCHHHHHhhChHHHHHHhcCcC-------------------------CCCCCCCCCHHHHHHHHHHHHHHHH----
Q 004941 613 VCDGMTYEEIKKNMPEEYEARKKDKL-------------------------RYRYPRGESYLDVIQRLEPVIIELE---- 663 (722)
Q Consensus 613 ~~eg~t~~ei~~~~p~~~~~~~~d~~-------------------------~~r~P~gES~~dv~~Rl~~~l~eL~---- 663 (722)
.|+|++++++.+.+|+.+..++.+++ .+++|+|||+.++.+|+.++|.++.
T Consensus 79 ~~EG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gES~~~~~~Rv~~~l~~li~~~~ 158 (236)
T PTZ00123 79 ALQGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPGNDPVYKDIPKDALPNTECLKDTVERVLPYWEDHIAPDI 158 (236)
T ss_pred cccCCCHHHHHHHccHHHHHHHhcccCCCCCCcccccccccccchhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987544443322 2345899999999999999998863
Q ss_pred hCCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCC
Q 004941 664 RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT 711 (722)
Q Consensus 664 ~~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~ 711 (722)
..+++|||||||++|+++++++++++.+....+.+++++++.|++...
T Consensus 159 ~~~~~vliVsHG~vir~ll~~l~~~~~~~~~~~~~~n~~~~~~~~~~~ 206 (236)
T PTZ00123 159 LAGKKVLVAAHGNSLRALVKYLDKMSEEDILELNIPTGVPLVYELDEN 206 (236)
T ss_pred hCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhhccCCCCceEEEEECCC
Confidence 235789999999999999999999999988899999999999998655
No 23
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=99.94 E-value=8.6e-27 Score=225.12 Aligned_cols=146 Identities=33% Similarity=0.417 Sum_probs=126.0
Q ss_pred cEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cCCCccccc
Q 004941 530 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWR 604 (722)
Q Consensus 530 ~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g~~v~~~~ 604 (722)
+|||||||++.+|..+.+.| |.|||+.|++||+.++++|.... ..+++.|||||+.||+|||+++ .+.+ ...+
T Consensus 1 ~i~lvRHG~s~~n~~~~~~g~~d~~Lt~~G~~qa~~~a~~l~~~~-~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~-~~~~ 78 (155)
T smart00855 1 RLYLIRHGETEANREGRLTGWTDSPLTELGRAQAEALGELLASLG-RLRFDVIYSSPLLRARETAEALAIALGLG-EVDP 78 (155)
T ss_pred CEEEEeCCCCcccccCeEcCCCCCCCCHHHHHHHHHHHHHHHhcc-CCCCCEEEeCchHHHHHHHHHHHHhcCCC-CCCh
Confidence 58999999999998776664 99999999999999999886432 3478999999999999999999 3444 4889
Q ss_pred ccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHh----CCCcEEEEeCHHHHHH
Q 004941 605 ALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER----QRAPVVVISHQAVLRA 680 (722)
Q Consensus 605 ~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~----~~~~VLIVSHg~vIr~ 680 (722)
.|+|+++|.|+|+++.++...+|..+. ++..+.+|+|||+.++..|+..++.++.+ ..++|||||||++|++
T Consensus 79 ~L~E~~~G~~~g~~~~~~~~~~~~~~~----~~~~~~~~~gEs~~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtHg~~ir~ 154 (155)
T smart00855 79 RLRERDYGAWEGLTKEEERAKAWTRPA----DWLGAAPPGGESLADVVERLVRALEELIATHDKSGQNVLIVSHGGVIRA 154 (155)
T ss_pred hhhhcccceecCCcHHHHHHHHHHHHh----ccCCCCCcCCCCHHHHHHHHHHHHHHHHHhcccCCCeEEEEECCccccc
Confidence 999999999999999999888776553 33677899999999999999999999975 3578999999999986
Q ss_pred H
Q 004941 681 L 681 (722)
Q Consensus 681 L 681 (722)
+
T Consensus 155 ~ 155 (155)
T smart00855 155 L 155 (155)
T ss_pred C
Confidence 4
No 24
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=7.3e-26 Score=228.13 Aligned_cols=183 Identities=27% Similarity=0.311 Sum_probs=161.3
Q ss_pred CCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cC---
Q 004941 526 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG--- 597 (722)
Q Consensus 526 ~~~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g--- 597 (722)
+...+++|||||||+||.+++++| |.+||+.|++||++++++|... +..++.+|||++.||+|||+.+ .+
T Consensus 3 ~~~~~lvlvRHGes~wN~e~~~~G~~D~~Lte~G~~qA~~~~~~l~~~--~~~~~~~~tS~l~RakqT~~~il~~~~~~~ 80 (214)
T KOG0235|consen 3 SNTFRLVLVRHGESEWNKENIFQGWIDAPLTEKGEEQAKAAAQRLKDL--NIEFDVCYTSDLKRAKQTAELILEELKQKK 80 (214)
T ss_pred CcceEEEEEecCchhhhhhCcccccccCccChhhHHHHHHHHHHHHhc--CCcccEEecCHHHHHHHHHHHHHHhhccCC
Confidence 345789999999999999999999 9999999999999999999866 6678999999999999999999 23
Q ss_pred CCcccccccccccCCcCCCCCHHHHHhhChHH--HHHHhcCc-CCCCCCCCCCHHHHHHHHHHHHHHHHh----CCCcEE
Q 004941 598 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE--YEARKKDK-LRYRYPRGESYLDVIQRLEPVIIELER----QRAPVV 670 (722)
Q Consensus 598 ~~v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~--~~~~~~d~-~~~r~P~gES~~dv~~Rl~~~l~eL~~----~~~~VL 670 (722)
.|+....+|+|.++|.++|+...++.+.++.+ +..|.... .....|.|||..++..|+.+++++... ++.+||
T Consensus 81 ~pv~~~~~L~ER~yG~l~Gl~~~e~~~~~g~~~~~~~~r~~~~~~~~~p~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vl 160 (214)
T KOG0235|consen 81 VPVLYTWRLNERHYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEIPLPDGESLKDCLDRLLPFWNEEIAKESKEGKNVL 160 (214)
T ss_pred cceEechhhchhhhccccCccHHHHHHHcchhccccchhhccCCcCCCCCCccHHHHHHHHHHHHHHhhhhhhcCCcEEE
Confidence 78899999999999999999999999999976 44444443 445678999999999999999998754 478999
Q ss_pred EEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECC
Q 004941 671 VISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV 710 (722)
Q Consensus 671 IVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~ 710 (722)
|++||..+|+++.++.|+..+.+-.+.++.+-.+.++.+.
T Consensus 161 i~aHGnsLR~i~~~l~g~s~~~i~~~~~~t~vp~v~~ld~ 200 (214)
T KOG0235|consen 161 IVAHGNSLRAIVKHLEGISDEAIKELNLPTGVPIVYELDK 200 (214)
T ss_pred EEcCcHHHHHHHHHHhcCCHhhhhheecccCCceEEEccc
Confidence 9999999999999999999999988999998888777654
No 25
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.92 E-value=7.2e-25 Score=217.00 Aligned_cols=184 Identities=23% Similarity=0.260 Sum_probs=162.2
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh------cCCC
Q 004941 528 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI------AGFP 599 (722)
Q Consensus 528 ~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i------~g~~ 599 (722)
++.++|+|||||+||..+.+.| |.+||++|.++|...|+.|++. +..|+.+|||-+.||++|++++ ..+|
T Consensus 1 ~~~Lvl~RHGqSeWN~~NlFtGW~Dv~LtekG~~EA~~ag~llk~~--~~~~dia~TS~L~RAi~T~~i~L~e~d~~~ip 78 (230)
T COG0588 1 MMKLVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEE--GLEFDIAYTSVLKRAIKTLNIVLEESDQLWIP 78 (230)
T ss_pred CceEEEEecCchhhhhcCceeeeeecCcchhhHHHHHHHHHHHHHc--CCCcceeehHHHHHHHHHHHHHhhhhcccCcc
Confidence 4689999999999999999999 9999999999999999999876 7899999999999999999998 3578
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCC-------------------------CCCCHHHHHHH
Q 004941 600 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYP-------------------------RGESYLDVIQR 654 (722)
Q Consensus 600 v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P-------------------------~gES~~dv~~R 654 (722)
+.....|+|.++|.++|++..+..++|.++.-..+...+...+| .+||..++.+|
T Consensus 79 v~kswrLNERhYG~LqGlnK~~t~~kyGeeqv~~wRRsydi~PP~~~~~~~~~~~~d~ry~~~~~~~~p~~EsLkdt~~R 158 (230)
T COG0588 79 VIKSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVER 158 (230)
T ss_pred hhhHHHhhhhhhhhhhcCChHHHHHHHhHHHHHHHHHhcCCCCCCcccccccccccccccccccccCCCccchHHHHHHH
Confidence 88888999999999999999999999987654433333444444 45999999999
Q ss_pred HHHHHHHHH----hCCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCce
Q 004941 655 LEPVIIELE----RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGV 713 (722)
Q Consensus 655 l~~~l~eL~----~~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~ 713 (722)
+.|++.... ..+++|||++||..||+|+.|+.+++-+++..+.+|++--+.++.+....
T Consensus 159 v~Pyw~~~I~p~l~~Gk~VlI~AHGNSlRaLiK~L~~iSd~dI~~l~IPtg~Plvyeld~~l~ 221 (230)
T COG0588 159 VLPYWEDDIAPNLKSGKNVLIVAHGNSLRALIKYLEGISDEDILDLNIPTGIPLVYELDKNLK 221 (230)
T ss_pred hhHHHHHHhhHHHhCCCeEEEEecchhHHHHHHHHhCCCHHHhhhcccCCCCcEEEEECCCCc
Confidence 999998864 35899999999999999999999999999999999999999888876543
No 26
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=99.86 E-value=4.4e-21 Score=205.12 Aligned_cols=167 Identities=20% Similarity=0.265 Sum_probs=126.3
Q ss_pred ccEEEecccccccccCCCcCCCCC---CCHHHHHHHHHHHHHHHHHhcC----CCCCEEEEcChHHHHHHHHHhc----C
Q 004941 529 RPILLTRHGESRDNVRGRIGGDTI---LSDAGEIYAKKLANFVEKRLKS----ERAASIWTSTLQRTILTASPIA----G 597 (722)
Q Consensus 529 ~~IyLvRHGes~~n~~~~~~GD~p---LTe~G~~QA~~L~~~L~~~l~~----~~~~~V~sSpl~RaiQTA~~i~----g 597 (722)
++||||||||+..+ + ..|.+ ||+.|++||++++++|...... .+++.|||||+.||+|||++|. +
T Consensus 103 ~~L~LVRHGq~~~~--~--~~d~~~~~LTe~G~~QA~~lg~~L~~~~~~~~~~~~~d~IysSPL~RA~qTAeiIa~~~~~ 178 (299)
T PTZ00122 103 RQIILVRHGQYINE--S--SNDDNIKRLTELGKEQARITGKYLKEQFGEILVDKKVKAIYHSDMTRAKETAEIISEAFPG 178 (299)
T ss_pred eEEEEEECCCCCCC--C--CCCcccCCCCHHHHHHHHHHHHHHHHhhccccccCCCCEEEEcCcHHHHHHHHHHHHhCCC
Confidence 89999999996543 2 22444 9999999999999988754211 2789999999999999999982 4
Q ss_pred CCcccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC-----CCcEEEE
Q 004941 598 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-----RAPVVVI 672 (722)
Q Consensus 598 ~~v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~-----~~~VLIV 672 (722)
.++..++.|+|. ++..+. | ....+.++++|+ .+..+|+..++.++... .+.+|||
T Consensus 179 ~~v~~d~~LrEG-------~~~~~~----~--------~~~~~~~~gee~-~~~~~Rv~~al~~i~~r~~~~~~~~vLVV 238 (299)
T PTZ00122 179 VRLIEDPNLAEG-------VPCAPD----P--------PSRGFKPTIEEI-LEDMKRIEAAFEKYFHRPVEDEDSVEIIV 238 (299)
T ss_pred CCceeCcccccC-------CccccC----c--------cccccCCCcchH-HHHHHHHHHHHHHHHHhcccCCCCeEEEE
Confidence 678888999982 222111 1 012234455565 66799999999998642 2468999
Q ss_pred eCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECC-CceEEEEEe
Q 004941 673 SHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV-TGVQEKRYK 719 (722)
Q Consensus 673 SHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~-~g~~~~r~~ 719 (722)
|||++|+++++++++.+.+.+..+.+++++++.|+... ..+....++
T Consensus 239 sHGgvIR~ll~~lLglp~~~~~~~~~~N~sit~l~~~~~g~~~l~~~n 286 (299)
T PTZ00122 239 CHGNVIRYLVCRALQLPPEAWLRLSLYNCGITWIVISSEGHVSLSGFG 286 (299)
T ss_pred eCChHHHHHHHHHhCcCHHHHhhccCCCceEEEEEEeCCCcEEEEEEe
Confidence 99999999999999999888888899999999999864 344554443
No 27
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=99.85 E-value=5.6e-21 Score=183.49 Aligned_cols=135 Identities=33% Similarity=0.450 Sum_probs=116.2
Q ss_pred cEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---c-CCCcccc
Q 004941 530 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFPKIQW 603 (722)
Q Consensus 530 ~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~-g~~v~~~ 603 (722)
+|||||||++.++......+ |.|||+.|++||+.++++|... ..+++.|||||+.||+|||+++ . +.++...
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~--~~~~~~i~~Sp~~Ra~qTa~~l~~~~~~~~~~~~ 78 (153)
T cd07067 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKEL--GIKFDRIYSSPLKRAIQTAEIILEELPGLPVEVD 78 (153)
T ss_pred CEEEEECCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECcHHHHHHHHHHHHHhcCCCCceeC
Confidence 58999999999887654444 9999999999999999998754 3478999999999999999999 2 4566667
Q ss_pred cccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCcEEEEeCHHHHHHH
Q 004941 604 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRAL 681 (722)
Q Consensus 604 ~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~--~~~VLIVSHg~vIr~L 681 (722)
+.|+| .|+..++.++.+. +++|+||||+++|+.+
T Consensus 79 ~~L~e--------------------------------------------~R~~~~~~~l~~~~~~~~iliV~H~~~i~~~ 114 (153)
T cd07067 79 PRLRE--------------------------------------------ARVLPALEELIAPHDGKNVLIVSHGGVLRAL 114 (153)
T ss_pred ccchH--------------------------------------------HHHHHHHHHHHHhCCCCeEEEEeChHHHHHH
Confidence 77776 7888999988764 7899999999999999
Q ss_pred HHHHhCCCCCCCCCcccCCcEEEEEEECC
Q 004941 682 YAYFADRPLKEIPHIETPLHTIIEIQMGV 710 (722)
Q Consensus 682 l~~l~g~~~~~~~~l~~p~~sI~el~~~~ 710 (722)
++++++.+...++.+.+++++++++++..
T Consensus 115 ~~~l~~~~~~~~~~~~~~~~s~~~~~~~~ 143 (153)
T cd07067 115 LAYLLGLSDEDILRLNLPNGSISVLELDE 143 (153)
T ss_pred HHHHhCCCHHHHHhcCCCCceEEEEEEeC
Confidence 99999988877777899999999999865
No 28
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=99.78 E-value=5.6e-19 Score=159.16 Aligned_cols=88 Identities=28% Similarity=0.514 Sum_probs=82.8
Q ss_pred EEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEecCCCCCceeeccCCCc
Q 004941 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPNR 112 (722)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g~NR 112 (722)
|+|+|.+|++.+++.++|+||++.||+||+++|++|+....+.|++++++|....+|||||++++.++ ..+.||.|+||
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi~~~~~-~~~~WE~g~nr 80 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYIIANKDS-GVVSWENGPNR 80 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEEEeCCC-CcEEEEcCCCe
Confidence 79999999999999999999999999999999999999999999999999988778999999997655 78899999999
Q ss_pred ccccCCCCC
Q 004941 113 LLTGGALQG 121 (722)
Q Consensus 113 ~l~~~~~~~ 121 (722)
.+..|.++.
T Consensus 81 ~~~~p~~~~ 89 (99)
T cd05816 81 ELSAPSLKG 89 (99)
T ss_pred EEECCccCC
Confidence 999998755
No 29
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=99.77 E-value=4.5e-18 Score=162.18 Aligned_cols=132 Identities=30% Similarity=0.436 Sum_probs=108.2
Q ss_pred cEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc-C----CCccc
Q 004941 530 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-G----FPKIQ 602 (722)
Q Consensus 530 ~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~-g----~~v~~ 602 (722)
+|||+|||++.++..+.+.+ |.|||+.|++||+.++++|.+.. ..++.|||||++||+|||+++. + .++..
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~l~~~l~~~~--~~~~~v~sSp~~R~~~Ta~~~~~~~~~~~~~~~ 78 (153)
T cd07040 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRERY--IKFDRIYSSPLKRAIQTAEIILEGLFEGLPVEV 78 (153)
T ss_pred CEEEEeCCCCccccCCCccCCCCCCcCHHHHHHHHHHHHHHHHhC--CCCCEEEECChHHHHHHHHHHHHHhcCCCCeEE
Confidence 48999999999887665344 99999999999999999997652 4789999999999999999992 1 12211
Q ss_pred ccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC----CCcEEEEeCHHHH
Q 004941 603 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ----RAPVVVISHQAVL 678 (722)
Q Consensus 603 ~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~----~~~VLIVSHg~vI 678 (722)
.+. .|+.+++.++.+. .++++||||+++|
T Consensus 79 ~~~-----------------------------------------------~r~~~~~~~~~~~~~~~~~~iliv~H~~~i 111 (153)
T cd07040 79 DPR-----------------------------------------------ARVLNALLELLARHLLDGKNVLIVSHGGTI 111 (153)
T ss_pred CHH-----------------------------------------------HHHHHHHHHHHHhhCCCCCEEEEEeCCHHH
Confidence 111 7888888887663 6799999999999
Q ss_pred HHHHHHHhCCCCCCCCCcccCCcEEEEEEECC
Q 004941 679 RALYAYFADRPLKEIPHIETPLHTIIEIQMGV 710 (722)
Q Consensus 679 r~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~ 710 (722)
+.+++++++.+....+.+.+++++++.++...
T Consensus 112 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (153)
T cd07040 112 RALLAALLGLSDEEILSLNLPNGSILVLELDE 143 (153)
T ss_pred HHHHHHHhCcCHHHhccccCCCCceEEEEEcC
Confidence 99999999988777777889999999998754
No 30
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=99.76 E-value=1.1e-18 Score=156.35 Aligned_cols=88 Identities=26% Similarity=0.503 Sum_probs=73.1
Q ss_pred eEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccCccc----CCCceEEEEecCCCCCceeEEEEEecCCCCCcee
Q 004941 30 QFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE----SASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (722)
Q Consensus 30 ~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~----~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~ 105 (722)
|.-|+|+| +.++.+++.|+|+||+++||+||++||++|... +++.|.++|.+|... +|||||++++.+. .+.
T Consensus 1 ~v~V~F~v-~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~-~~eYKy~i~~~~g--~~~ 76 (96)
T PF00686_consen 1 QVSVTFRV-NYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGT-PFEYKYVIKDADG--NVI 76 (96)
T ss_dssp EEEEEEEE-SE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTS-EEEEEEEEEETTS--EEE
T ss_pred CEEEEEEE-EeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCC-EEEEEEEEEeCCC--CEE
Confidence 56799999 559999999999999999999999999999975 679999999999955 8999999986554 779
Q ss_pred eccCCCcccccCCCCC
Q 004941 106 VEEGPNRLLTGGALQG 121 (722)
Q Consensus 106 wE~g~NR~l~~~~~~~ 121 (722)
||+|+||.+..|....
T Consensus 77 WE~g~nR~~~~~~~~~ 92 (96)
T PF00686_consen 77 WESGENRVLTVPSSGS 92 (96)
T ss_dssp E-SSSEEEEE--SSSE
T ss_pred ECCCCCEEEECCCCCc
Confidence 9999999999887653
No 31
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=99.71 E-value=2.3e-17 Score=149.20 Aligned_cols=90 Identities=26% Similarity=0.305 Sum_probs=80.7
Q ss_pred ceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccCc----ccCCCceEEEEecCCCCCceeEEEEEecCCCCCce
Q 004941 29 GQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMG----RESASMWELSFVVPPNHETLDFKFLLKPKYGNGPC 104 (722)
Q Consensus 29 ~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~----~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~ 104 (722)
.|.-|+|+|++|++..++.++|+||.|+||+|++++|+.|. ...++.|.+++++|... +|||||++++.+ ..+
T Consensus 1 ~~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~-~~eyK~~~~~~~--~~~ 77 (101)
T cd05807 1 DQVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGT-TIEFKFIKKNGD--NTV 77 (101)
T ss_pred CcEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCC-cEEEEEEEECCC--CCE
Confidence 47889999999999999999999999999999999999653 35789999999999998 899999999754 577
Q ss_pred eeccCCCcccccCCCCC
Q 004941 105 IVEEGPNRLLTGGALQG 121 (722)
Q Consensus 105 ~wE~g~NR~l~~~~~~~ 121 (722)
.||.|+||.++.|....
T Consensus 78 ~WE~g~nr~~~~p~~~~ 94 (101)
T cd05807 78 TWESGSNHTYTAPSSTT 94 (101)
T ss_pred EEEeCCCEEEeCCCCCc
Confidence 89999999999997654
No 32
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.68 E-value=4.1e-16 Score=151.55 Aligned_cols=117 Identities=26% Similarity=0.346 Sum_probs=101.2
Q ss_pred CCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 004941 316 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM 395 (722)
Q Consensus 316 ~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~ 395 (722)
.++++.+|||+||+||||||||.+|+++|...|+.+.++|.|.. +++++.+.+|..+++.+..++..++|+...+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv---R~gL~~dLgFs~edR~eniRRvaevAkll~d-- 93 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV---RHGLNRDLGFSREDRIENIRRVAEVAKLLAD-- 93 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH---hhcccCCCCCChHHHHHHHHHHHHHHHHHHH--
Confidence 36789999999999999999999999999999999999999877 5678889999999999999999999999666
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCC-HHHHHH
Q 004941 396 ISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICND-RDIIER 446 (722)
Q Consensus 396 ~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d-~~~i~~ 446 (722)
+|.+||+....+.++.|++++++.+.+ -|+|++++. -++.++
T Consensus 94 ------aG~iviva~ISP~r~~R~~aR~~~~~~---~FiEVyV~~pl~vce~ 136 (197)
T COG0529 94 ------AGLIVIVAFISPYREDRQMARELLGEG---EFIEVYVDTPLEVCER 136 (197)
T ss_pred ------CCeEEEEEeeCccHHHHHHHHHHhCcC---ceEEEEeCCCHHHHHh
Confidence 999999999999999999999995544 277775553 344433
No 33
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=99.68 E-value=9.7e-17 Score=145.69 Aligned_cols=90 Identities=27% Similarity=0.347 Sum_probs=80.3
Q ss_pred eEEEEEEEEe-cccCCCcEEEEecCCCccCCCCcc--ccc-cCcccCCCceEEEEecCCCCCceeEEEEEecCCCCCcee
Q 004941 30 QFYVSLKMVN-IKLKGDLIPHVYGSVPLVGSWDSS--KAL-AMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (722)
Q Consensus 30 ~~~v~lkv~a-P~l~~~~~l~l~Gs~~~LG~W~~~--kal-~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~ 105 (722)
|.-|+|.|.+ |++..++.++|+||.++||+||+. +|+ +|...+++.|.+++++|... +|||||++++.+ ..+.
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~-~veyK~v~~~~~--g~v~ 78 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGT-YIEFKFLKAPAD--GTGT 78 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCC-cEEEEEEEECCC--CCEE
Confidence 5679999976 799999999999999999999996 456 89999999999999999987 899999999655 5788
Q ss_pred eccCCCcccccCCCCCC
Q 004941 106 VEEGPNRLLTGGALQGD 122 (722)
Q Consensus 106 wE~g~NR~l~~~~~~~~ 122 (722)
||+|+||.++.|....+
T Consensus 79 WE~g~Nr~~~~p~~~~~ 95 (103)
T cd05820 79 WEGGSNHAYTTPSGGTG 95 (103)
T ss_pred EEeCCCEeEECCCCCcE
Confidence 99999999999977654
No 34
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=99.68 E-value=1.3e-15 Score=147.78 Aligned_cols=136 Identities=18% Similarity=0.194 Sum_probs=97.8
Q ss_pred ccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc---CCCcccccc
Q 004941 529 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---GFPKIQWRA 605 (722)
Q Consensus 529 ~~IyLvRHGes~~n~~~~~~GD~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~---g~~v~~~~~ 605 (722)
|+|||||||++.++.. -..|.|||+.|++||+.++++|... ...++.|||||+.||+|||+.+. +.+...
T Consensus 1 m~l~LvRHg~a~~~~~--~d~dr~Lt~~G~~qa~~~~~~l~~~--~~~~d~i~sSp~~Ra~qTa~~l~~~~~~~~~~--- 73 (152)
T TIGR00249 1 MQLFIMRHGDAALDAA--SDSVRPLTTNGCDESRLVAQWLKGQ--GVEIERILVSPFVRAEQTAEIVGDCLNLPSSA--- 73 (152)
T ss_pred CEEEEEeCCCcccccC--CCCCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCcHHHHHHHHHHHHHcCCCcce---
Confidence 5799999999988754 2238899999999999999998754 45789999999999999999982 221100
Q ss_pred cccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHh-CCCcEEEEeCHHHHHHHHHH
Q 004941 606 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER-QRAPVVVISHQAVLRALYAY 684 (722)
Q Consensus 606 L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~-~~~~VLIVSHg~vIr~Ll~~ 684 (722)
..++++ +|+ ++..++. .++.++.. ..++++||+|+..|..++.+
T Consensus 74 ------~~~~~l------------------------~p~-~~~~~~~----~~l~~~~~~~~~~vliVgH~P~i~~l~~~ 118 (152)
T TIGR00249 74 ------EVLEGL------------------------TPC-GDIGLVS----DYLEALTNEGVASVLLVSHLPLVGYLVAE 118 (152)
T ss_pred ------EEccCc------------------------CCC-CCHHHHH----HHHHHHHhcCCCEEEEEeCCCCHHHHHHH
Confidence 011111 122 3333433 34444433 35689999999999999999
Q ss_pred HhCCCCCCCCCcccCCcEEEEEEECC
Q 004941 685 FADRPLKEIPHIETPLHTIIEIQMGV 710 (722)
Q Consensus 685 l~g~~~~~~~~l~~p~~sI~el~~~~ 710 (722)
+.+... .+.++.+++..|+.+.
T Consensus 119 l~~~~~----~~~~~~~~~~~l~~~~ 140 (152)
T TIGR00249 119 LCPGEN----PIMFTTGAIASLLWDE 140 (152)
T ss_pred HhCCCC----CCcCcceeEEEEEEec
Confidence 987532 1468999999999863
No 35
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.67 E-value=1.9e-16 Score=142.21 Aligned_cols=88 Identities=22% Similarity=0.340 Sum_probs=80.1
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEecCCC-CCceeeccCC
Q 004941 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYG-NGPCIVEEGP 110 (722)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~-~~~~~wE~g~ 110 (722)
.|+|.+.+-+...++.++|+|+++.||+|++++|++|..++++.|.+++++|... +|||||++++.+. ...+.||.|+
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~-~veyKyv~~~~~~~~~~v~WE~g~ 80 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPAST-NVEWKCLKRNETNPTAGVQWQGGG 80 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCC-eEEEEEEEEcCCCCcceEEEeeCC
Confidence 5788888889999999999999999999999999999999999999999999986 8999999997665 3568899999
Q ss_pred CcccccCCCC
Q 004941 111 NRLLTGGALQ 120 (722)
Q Consensus 111 NR~l~~~~~~ 120 (722)
||.++.|...
T Consensus 81 Nr~~~~p~~~ 90 (97)
T cd05810 81 NNQLTTGNST 90 (97)
T ss_pred CEEEeCCCCC
Confidence 9999988763
No 36
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.65 E-value=3.1e-16 Score=139.79 Aligned_cols=85 Identities=25% Similarity=0.436 Sum_probs=77.1
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccC-CCceEEEEecCC-CCCceeEEEEEecCCCCCceeeccC
Q 004941 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES-ASMWELSFVVPP-NHETLDFKFLLKPKYGNGPCIVEEG 109 (722)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~-~~~W~~~l~~~~-~~~~leyKf~~~~~~~~~~~~wE~g 109 (722)
.|+|++++ ++..++.++|+||.++||+||+++|++|+..+ .+.|.+++++|. ...+|+|||++++.+ ..+.||.|
T Consensus 1 ~v~f~i~~-~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~~~~~--~~~~wE~~ 77 (96)
T cd05467 1 QVRFQVRC-TTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVIVDDD--GNVQWESG 77 (96)
T ss_pred CEEEEEEE-ECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEEECCC--CCEEeccC
Confidence 48999999 88999999999999999999999999999998 999999999998 334899999999755 67899999
Q ss_pred CCcccccCCC
Q 004941 110 PNRLLTGGAL 119 (722)
Q Consensus 110 ~NR~l~~~~~ 119 (722)
+||.+..|..
T Consensus 78 ~~r~~~~~~~ 87 (96)
T cd05467 78 SNRVLTVPST 87 (96)
T ss_pred CCeEEEcCCC
Confidence 9999988754
No 37
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.64 E-value=5e-16 Score=140.28 Aligned_cols=83 Identities=22% Similarity=0.430 Sum_probs=76.7
Q ss_pred EEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEecCCCCCceeeccCCCc
Q 004941 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPNR 112 (722)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g~NR 112 (722)
|+|+++++ +..++.|+|+||++.||+|++++|++|+..+.+.|++++++|.. .++||||++++.++...+.||.|+||
T Consensus 2 v~F~i~~~-t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~-~~veYKY~i~~~~~~~~~~WE~g~nr 79 (100)
T cd05817 2 VTFKIHYP-TQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPES-VYIEYKYFVSNYDDPNTVLWESGPNR 79 (100)
T ss_pred EEEEEEEE-cCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCC-CcEEEEEEEEecCCCCCeEecCCCCE
Confidence 78999999 88999999999999999999999999999999999999999994 57999999998776678999999999
Q ss_pred ccccC
Q 004941 113 LLTGG 117 (722)
Q Consensus 113 ~l~~~ 117 (722)
.++..
T Consensus 80 ~~~~~ 84 (100)
T cd05817 80 VLRTN 84 (100)
T ss_pred EEEeC
Confidence 98863
No 38
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=99.64 E-value=6.3e-16 Score=137.78 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=75.7
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEecCCCCCceeeccCCC
Q 004941 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPN 111 (722)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g~N 111 (722)
-|+|+|++ ++..++.++|+||++.||+||+++|++|+....+.|.+++++|... ++||||++++. ...+.||.|+|
T Consensus 2 ~v~F~v~~-~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~-~~eYKy~~~~~--~~~~~WE~~~n 77 (95)
T cd05808 2 AVTFNVTA-TTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGT-AIEYKYIKKDG--SGTVTWESGPN 77 (95)
T ss_pred eEEEEEEE-ECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCC-eEEEEEEEECC--CCcEEEecCCC
Confidence 48999999 7889999999999999999999999999999999999999999976 79999999853 34567999999
Q ss_pred cccccCCC
Q 004941 112 RLLTGGAL 119 (722)
Q Consensus 112 R~l~~~~~ 119 (722)
|.+..|..
T Consensus 78 r~~~~~~~ 85 (95)
T cd05808 78 RTATTPAS 85 (95)
T ss_pred EEEECCCC
Confidence 99998754
No 39
>PRK06193 hypothetical protein; Provisional
Probab=99.63 E-value=3.3e-15 Score=151.29 Aligned_cols=128 Identities=16% Similarity=0.122 Sum_probs=97.9
Q ss_pred CccEEEecccccccccCCCcCC-------CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhcCCCc
Q 004941 528 PRPILLTRHGESRDNVRGRIGG-------DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPK 600 (722)
Q Consensus 528 ~~~IyLvRHGes~~n~~~~~~G-------D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~g~~v 600 (722)
...|||||||++++|..+.+.+ |.|||++|++||+.++++|... ...++.|||||+.||+|||+.+.+..
T Consensus 42 ~~~L~LvRHGet~~n~~~~~~gd~d~~~~~rpLt~~G~~qA~~l~~~L~~~--~~~~d~V~sSpl~Ra~qTA~il~~~~- 118 (206)
T PRK06193 42 GGYVIYFRHAATDRSQADQDTSDMDDCSTQRNLSEEGREQARAIGEAFRAL--AIPVGKVISSPYCRAWETAQLAFGRH- 118 (206)
T ss_pred CCEEEEEeCccCCCCccCCcccccccCcCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHhccc-
Confidence 4689999999998887666555 3599999999999999998754 55789999999999999999884321
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEeCHHHHHH
Q 004941 601 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRA 680 (722)
Q Consensus 601 ~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~~~~VLIVSHg~vIr~ 680 (722)
.....+++ +....|.+|++..+..|+..+|.++....++||||+|+..|+.
T Consensus 119 ~~~~~l~~-----------------------------~~~~~~~~~~~~~y~~~l~~~I~~l~~~~~~vLlVgHnp~i~~ 169 (206)
T PRK06193 119 EKEIRLNF-----------------------------LNSEPVPAERNALLKAGLRPLLTTPPDPGTNTVLVGHDDNLEA 169 (206)
T ss_pred ccCccccc-----------------------------ccccCCChhhHHHHHHHHHHHHhhCCCCCCeEEEEeCchHHHH
Confidence 00000110 0011224578888889999999999877889999999999998
Q ss_pred HHHHHhC
Q 004941 681 LYAYFAD 687 (722)
Q Consensus 681 Ll~~l~g 687 (722)
+.+++.+
T Consensus 170 l~g~~~~ 176 (206)
T PRK06193 170 ATGIYPE 176 (206)
T ss_pred HhCCCCc
Confidence 8885544
No 40
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=99.63 E-value=8.1e-16 Score=138.66 Aligned_cols=87 Identities=15% Similarity=0.220 Sum_probs=76.4
Q ss_pred eEEEEEEEEecccCCCcEEEEecCCCccCCCCcccc-ccCc-ccCCCceEEEEecCCCCCceeEEEEEecCCCCCceeec
Q 004941 30 QFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKA-LAMG-RESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVE 107 (722)
Q Consensus 30 ~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~ka-l~M~-~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE 107 (722)
|.-|+|+|++|++..++.++|+||.++||+|+++++ +.|. ...++.|.+++++|... +|||||++++.+ ...+.||
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~-~veyKyv~~~~~-~~~~~WE 79 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGR-NIEFKAIKKSKD-GTNKSWQ 79 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCC-cEEEEEEEEcCC-CCeeEEe
Confidence 678999999999999999999999999999999862 5554 35679999999999986 899999999655 2267799
Q ss_pred cCCCcccccCC
Q 004941 108 EGPNRLLTGGA 118 (722)
Q Consensus 108 ~g~NR~l~~~~ 118 (722)
.|+||.++.|.
T Consensus 80 ~g~nr~~~~p~ 90 (99)
T cd05809 80 GGQQSWYPVPL 90 (99)
T ss_pred cCCCeeEECCC
Confidence 99999999987
No 41
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.62 E-value=3.9e-15 Score=144.45 Aligned_cols=116 Identities=25% Similarity=0.336 Sum_probs=87.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 398 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~ 398 (722)
++++|||+|||||||||||++|.++|...|+++.++|.|.+| .+...+.+|..+++.+.++++.++|+.+.+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR---~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~----- 72 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR---HGLNADLGFSKEDREENIRRIAEVAKLLAD----- 72 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC---TTTTTT--SSHHHHHHHHHHHHHHHHHHHH-----
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh---hccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----
Confidence 478999999999999999999999999999999999998775 456667788888888889988899888666
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHH
Q 004941 399 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 447 (722)
Q Consensus 399 l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~r 447 (722)
+|.+||++++.+.++.|+.++++...+ .++-|.+.|+ .+++++|
T Consensus 73 ---~G~ivIva~isp~~~~R~~~R~~~~~~-~f~eVyv~~~-~e~~~~R 116 (156)
T PF01583_consen 73 ---QGIIVIVAFISPYREDREWARELIPNE-RFIEVYVDCP-LEVCRKR 116 (156)
T ss_dssp ---TTSEEEEE----SHHHHHHHHHHHHTT-EEEEEEEES--HHHHHHH
T ss_pred ---CCCeEEEeeccCchHHHHHHHHhCCcC-ceEEEEeCCC-HHHHHHh
Confidence 999999999999999999999995533 3333334454 4444444
No 42
>KOG4754 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=3.4e-15 Score=147.86 Aligned_cols=160 Identities=20% Similarity=0.243 Sum_probs=119.0
Q ss_pred CccEEEecccccccccCCCcC---------CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc--
Q 004941 528 PRPILLTRHGESRDNVRGRIG---------GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-- 596 (722)
Q Consensus 528 ~~~IyLvRHGes~~n~~~~~~---------GD~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~-- 596 (722)
.++||||||||..+|+.+.-. -|+-||+.|++|+..|+..+...--...+..|++|||+||+||+...+
T Consensus 14 ~KtiyLvRHgQg~HNV~g~~~h~ay~s~~~fD~~LTplG~~Qv~~l~~~~~A~qL~~~ieliv~SPMrRtLqT~v~~f~~ 93 (248)
T KOG4754|consen 14 CKTIYLVRHGQGIHNVAGEEDHKAYWSEDYFDPHLTPLGWKQVDNLRKHLMAKQLPNKIELIVVSPMRRTLQTMVIAFGG 93 (248)
T ss_pred ceEEEEEeccccccccCcccchhhhhhhhccccccCHHHHHHHHHHhhhhhhhhcCCceeEEEechHHHHHHHHHHHhcc
Confidence 589999999999999875311 189999999999999998776542233589999999999999999772
Q ss_pred --------CCCccccccc----cc-ccCCcCC-CCCHHHHHhhChH-HHHHHhcC-cCCCCCCCCCCHHHHHHHHHHHHH
Q 004941 597 --------GFPKIQWRAL----DE-INAGVCD-GMTYEEIKKNMPE-EYEARKKD-KLRYRYPRGESYLDVIQRLEPVII 660 (722)
Q Consensus 597 --------g~~v~~~~~L----~E-i~~G~~e-g~t~~ei~~~~p~-~~~~~~~d-~~~~r~P~gES~~dv~~Rl~~~l~ 660 (722)
..++.+.+.+ +| +.--.|+ +....+.++.||. .|..-..+ .+.+++-..|.+.+.+.|-..++.
T Consensus 94 ~~~e~g~~~~p~~vsp~~i~~~rE~lG~hpCD~r~~v~~~~~lfp~~DFs~~~~dv~~~~~pdy~ed~e~~a~r~re~~~ 173 (248)
T KOG4754|consen 94 YLAEDGEDPAPVKVSPPFIAVCRETLGDHPCDRRSSVTDLMKLFPAYDFSLCETDVDPLKKPDYREDDEESAARSREFLE 173 (248)
T ss_pred eeccCCCcCCceeecchHHHHHHHHhCCCcccccchhHHHHhhcccccceeeccCcchhccCcchhhHHHHHHhHHHHHH
Confidence 1345555666 77 4444455 4567788888883 22221111 223344467999999999999999
Q ss_pred HHHhC-CCcEEEEeCHHHHHHHHHHHhC
Q 004941 661 ELERQ-RAPVVVISHQAVLRALYAYFAD 687 (722)
Q Consensus 661 eL~~~-~~~VLIVSHg~vIr~Ll~~l~g 687 (722)
++... .+.|.||+|++.|+.++..+..
T Consensus 174 ~l~~r~ek~iavvths~fl~~llk~i~k 201 (248)
T KOG4754|consen 174 WLAKRPEKEIAVVTHSGFLRSLLKKIQK 201 (248)
T ss_pred HHHhCccceEEEEEehHHHHHHHHHhcc
Confidence 99664 5679999999999999988754
No 43
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=99.61 E-value=2.8e-14 Score=139.55 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=93.3
Q ss_pred ccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc---CCCcccccc
Q 004941 529 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---GFPKIQWRA 605 (722)
Q Consensus 529 ~~IyLvRHGes~~n~~~~~~GD~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~---g~~v~~~~~ 605 (722)
|+|||||||++.++.. ...|.|||++|++||+.++++|... ...++.|||||+.||+|||+++. +.+... ..
T Consensus 1 m~l~lvRHg~a~~~~~--~d~~rpLt~~G~~qa~~~~~~l~~~--~~~~d~i~sSp~~Ra~qTa~~l~~~~~~~~~~-~~ 75 (159)
T PRK10848 1 MQVFIMRHGDAALDAA--SDSVRPLTTCGCDESRLMANWLKGQ--KVDIERVLVSPYLRAEQTLEVVGECLNLPASA-EV 75 (159)
T ss_pred CEEEEEeCCCCCCCCC--CCcCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCHHHHHHHHHHHHHHhCCCCce-EE
Confidence 5799999999987742 1126799999999999999998754 45689999999999999999982 222111 11
Q ss_pred cccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHh-CCCcEEEEeCHHHHHHHHHH
Q 004941 606 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER-QRAPVVVISHQAVLRALYAY 684 (722)
Q Consensus 606 L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~-~~~~VLIVSHg~vIr~Ll~~ 684 (722)
+.++. |++ +.. .+..++..+.. ..++|+||+|...|..+..+
T Consensus 76 ~~~l~--------------------------------~~~-~~~----~~~~~l~~~~~~~~~~vllVgH~P~l~~l~~~ 118 (159)
T PRK10848 76 LPELT--------------------------------PCG-DVG----LVSAYLQALANEGVASVLVISHLPLVGYLVAE 118 (159)
T ss_pred ccCCC--------------------------------CCC-CHH----HHHHHHHHHHhcCCCeEEEEeCcCcHHHHHHH
Confidence 11111 111 111 22223333322 24689999999999999999
Q ss_pred HhCCCCCCCCCcccCCcEEEEEEEC
Q 004941 685 FADRPLKEIPHIETPLHTIIEIQMG 709 (722)
Q Consensus 685 l~g~~~~~~~~l~~p~~sI~el~~~ 709 (722)
+.+..... .++.+++..|+++
T Consensus 119 L~~~~~~~----~~~t~~i~~l~~~ 139 (159)
T PRK10848 119 LCPGETPP----MFTTSAIACVTLD 139 (159)
T ss_pred HhCCCCCC----CcCCceEEEEEec
Confidence 98643211 3889999999986
No 44
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.59 E-value=2e-15 Score=140.77 Aligned_cols=83 Identities=19% Similarity=0.422 Sum_probs=74.3
Q ss_pred EEEEEEecccCCCcEEEEecCCCccCCCCccccccCccc--CCCceEEEEecCCCCCceeEEEEEecC----CCCCce--
Q 004941 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE--SASMWELSFVVPPNHETLDFKFLLKPK----YGNGPC-- 104 (722)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~--~~~~W~~~l~~~~~~~~leyKf~~~~~----~~~~~~-- 104 (722)
|+|+|++|++..++.++|+|++++||+|++++|++|... ..+.|.+++++|... ++||||++++. .+...+
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~-~veYkY~~~~~~~~~~~~~~~~~ 81 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGV-DFQYRYFVAVVLNDSGPCQVIVR 81 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCC-eEEEEEEEEEeccCCCCccEEEe
Confidence 799999999999999999999999999999999999998 889999999999987 79999999864 333556
Q ss_pred eeccCCC-ccccc
Q 004941 105 IVEEGPN-RLLTG 116 (722)
Q Consensus 105 ~wE~g~N-R~l~~ 116 (722)
.||++.| |++..
T Consensus 82 ~WE~~~~~R~~~~ 94 (120)
T cd05814 82 KWETHLQPRSIKP 94 (120)
T ss_pred eccCCCCccEecc
Confidence 8999999 66653
No 45
>COG0645 Predicted kinase [General function prediction only]
Probab=99.59 E-value=9e-15 Score=141.97 Aligned_cols=142 Identities=17% Similarity=0.207 Sum_probs=114.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcC-----CCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGV-----NQSADFFRADNPEGMEARNEVAALAMEDM 395 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~-----~~~~~~~~~~~~~~~~~~~~va~~~l~d~ 395 (722)
.+++|+|+||+||||+|+.|++.|++..+++ |.+|+.+.|. .+...|+.......|..+...+..++.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrs-----D~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~-- 74 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRS-----DVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLS-- 74 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEeh-----HHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHh--
Confidence 5899999999999999999999999885454 5559988882 233446666677779999999999888
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004941 396 ISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 474 (722)
Q Consensus 396 ~~~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~R 474 (722)
.|..||+|+++..+..|+.++.+ ...++.+..|.|.| +.++++.|+..|+ +|.+++ +.+.+
T Consensus 75 ------~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~a-p~~v~~~rl~aR~---~d~sDA-~~~il------- 136 (170)
T COG0645 75 ------SGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEA-PEEVLRGRLAARK---GDASDA-TFDIL------- 136 (170)
T ss_pred ------CCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCC-cHHHHHHHHHHhC---CCcccc-hHHHH-------
Confidence 99999999999999999999998 66777777777766 4789999998875 467777 65555
Q ss_pred HHhhhcccccCCCC
Q 004941 475 LANYEKVYEPVDEG 488 (722)
Q Consensus 475 i~~y~~~yEpl~e~ 488 (722)
..+...++|..+.
T Consensus 137 -~~q~~~~~~~~~~ 149 (170)
T COG0645 137 -RVQLAEDEPWTEW 149 (170)
T ss_pred -HHHHhhhCCcccc
Confidence 5566667787754
No 46
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=99.58 E-value=6.6e-15 Score=134.13 Aligned_cols=90 Identities=24% Similarity=0.447 Sum_probs=78.3
Q ss_pred CceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccC----CCceEEEEecCCCCCceeEEEEEecCCCCCc
Q 004941 28 GGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES----ASMWELSFVVPPNHETLDFKFLLKPKYGNGP 103 (722)
Q Consensus 28 ~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~----~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~ 103 (722)
+.+.-|+|++.++. ..++.++|+|+++.||+|++++|++|+.++ .+.|..++++|... +|||||++++.+ ..
T Consensus 4 ~~~v~V~F~i~~~t-~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~-~veYKy~~~~~~--~~ 79 (106)
T cd05811 4 ATTVAVTFNERVTT-SYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGT-SFEYKFIRKESD--GS 79 (106)
T ss_pred CCEEEEEEEEeeEc-CCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCC-cEEEEEEEEcCC--Cc
Confidence 45677999999975 689999999999999999999999998764 58999999999965 799999998544 57
Q ss_pred eeeccCCCcccccCCCCC
Q 004941 104 CIVEEGPNRLLTGGALQG 121 (722)
Q Consensus 104 ~~wE~g~NR~l~~~~~~~ 121 (722)
+.||+|+||.+..|....
T Consensus 80 ~~WE~~~nr~~~~~~~~~ 97 (106)
T cd05811 80 VTWESDPNRSYTVPSGCG 97 (106)
T ss_pred EEEecCCCeEEECCCCCC
Confidence 899999999999887543
No 47
>PLN02950 4-alpha-glucanotransferase
Probab=99.57 E-value=5.1e-15 Score=177.78 Aligned_cols=111 Identities=24% Similarity=0.424 Sum_probs=99.9
Q ss_pred CCCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEecCCCCCcee
Q 004941 26 HAGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (722)
Q Consensus 26 ~~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~ 105 (722)
..+++.-|+|+|+||++..++.++|+||+++||+||+++|++|+.++++.|++++++|+...+|||||++++.+ +.+.
T Consensus 148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~--g~v~ 225 (909)
T PLN02950 148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAE--GLVS 225 (909)
T ss_pred CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCC--CceE
Confidence 45778899999999999999999999999999999999999999999999999999999988999999999754 5788
Q ss_pred eccCCCcccccCCCCCC--------------CCccccccccCccccc
Q 004941 106 VEEGPNRLLTGGALQGD--------------SSWRAYQENLEPSTVR 138 (722)
Q Consensus 106 wE~g~NR~l~~~~~~~~--------------~~wr~~~~~~~~~~~~ 138 (722)
||+|+||.+++|.+.++ +.||+--=-+|.+.+|
T Consensus 226 WE~g~NR~~~~p~~~~~~~~~~~~~~~~~~~~~~R~~Gi~~~l~SLr 272 (909)
T PLN02950 226 LELGVNRELSLDSSSGKPPSYIVASDGAFREMPWRGAGVAVPVFSIR 272 (909)
T ss_pred EeeCCCceeecCcccCCceEEEecccccccCCCccceEEEEecccCC
Confidence 99999999999988865 4577766677777777
No 48
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.57 E-value=3.8e-14 Score=134.25 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=90.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSAD-FFRADNPEGMEARNEVAALAMEDMISWMH 400 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~-~~~~~~~~~~~~~~~va~~~l~d~~~~l~ 400 (722)
||+|+|+|||||||+|+.|++.++ ..+++.|+++....+...... +........++.+...++..++
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------- 68 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALR------- 68 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHH-------
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHH-------
Confidence 799999999999999999999877 448999999886655322211 1111111122222333333333
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004941 401 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 476 (722)
Q Consensus 401 ~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~ 476 (722)
.|..+|+|.||..+..|+.+.++ .+.++++.++.+.|+ .+++.+|+..|.... +.... ..++.+++++++++
T Consensus 69 -~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~~~~~~R~~~R~~~~-~~~~~-~~~~~~~~~~~~~e 141 (143)
T PF13671_consen 69 -NGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAP-EETLRERLAQRNREG-DKRFE-VPEEVFDRMLARFE 141 (143)
T ss_dssp -TT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHH-HHHHHHHHHTTHCCC-TTS-----HHHHHHHHHHHH
T ss_pred -cCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECC-HHHHHHHHHhcCCcc-ccccc-CcHHHHHHHHHhhc
Confidence 78999999999999999999988 678999999998885 577788888776643 23222 34555555555443
No 49
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=99.56 E-value=8.4e-15 Score=132.40 Aligned_cols=84 Identities=24% Similarity=0.364 Sum_probs=71.3
Q ss_pred EEEEEEecccCCCcEEEEecCCCccCCCCccccccCccc---CCCceEEEEecCCCCCceeEEEEEecCCCCCceeeccC
Q 004941 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE---SASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEG 109 (722)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~---~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g 109 (722)
|+|++... ...+|.|+|+||+++||+|++++|++|+.+ +.++|++++++|.. .+|||||++++. +...+.||.|
T Consensus 2 l~f~i~~~-t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~-~~veYky~v~~~-~~~~~~wE~g 78 (101)
T cd05815 2 LSFKLPYY-TQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPG-FSSEYNYYVVDD-RKSVLRSESG 78 (101)
T ss_pred EEEEEEEE-ccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCC-CcEEEEEEEEcC-CCcEEEeecC
Confidence 67777664 556899999999999999999999999775 34589999999994 589999999865 4556779999
Q ss_pred CCcccccCCC
Q 004941 110 PNRLLTGGAL 119 (722)
Q Consensus 110 ~NR~l~~~~~ 119 (722)
+||.+..|.+
T Consensus 79 ~nr~~~~~~~ 88 (101)
T cd05815 79 EKRKLVLPEG 88 (101)
T ss_pred CCEeEECCcc
Confidence 9999998875
No 50
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.54 E-value=2.5e-14 Score=127.34 Aligned_cols=84 Identities=21% Similarity=0.340 Sum_probs=71.7
Q ss_pred EEEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEecCCCCCceeeccCC
Q 004941 31 FYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGP 110 (722)
Q Consensus 31 ~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g~ 110 (722)
+.|+|+++... ..++.++|+||+++||+|| +|++|..+ .+.|++++++|... +|||||++++.+ ..+.||.|+
T Consensus 2 ~~v~F~~~~~~-~~Gq~l~v~G~~~~LG~W~--~~~~l~~~-~~~W~~~~~l~~~~-~ieyKy~~~~~~--~~v~WE~g~ 74 (92)
T cd05818 2 VKLQVRLDHQV-KFGEHVAILGSTKELGSWK--KKVPMNWT-ENGWVCDLELDGGE-LVEYKFVIVKRD--GSVIWEGGN 74 (92)
T ss_pred EEEEEEEEEEc-CCCCEEEEEeChHHHCCCC--CCCccccC-CCCEEEEEEeCCCC-cEEEEEEEEcCC--CCEEEEeCC
Confidence 46888888755 6899999999999999999 56778776 57899999999986 899999999755 467899999
Q ss_pred CcccccCCCCC
Q 004941 111 NRLLTGGALQG 121 (722)
Q Consensus 111 NR~l~~~~~~~ 121 (722)
||.+..|....
T Consensus 75 Nr~~~~~~~~~ 85 (92)
T cd05818 75 NRVLELPKEGN 85 (92)
T ss_pred CEEEEccCCCC
Confidence 99999886643
No 51
>KOG4609 consensus Predicted phosphoglycerate mutase [General function prediction only]
Probab=99.53 E-value=5.2e-14 Score=139.35 Aligned_cols=164 Identities=19% Similarity=0.208 Sum_probs=118.5
Q ss_pred CCccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc-----CCCcc
Q 004941 527 TPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-----GFPKI 601 (722)
Q Consensus 527 ~~~~IyLvRHGes~~n~~~~~~GD~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~-----g~~v~ 601 (722)
..+.|+||||||..... .-..||+.|++||+.+|..|.+. +.+++.|..|+|.||.+||.+|+ ++...
T Consensus 93 atRhI~LiRHgeY~~~g-----~~~hLTelGReQAE~tGkRL~el--glk~d~vv~StM~RA~ETadIIlk~l~d~lk~~ 165 (284)
T KOG4609|consen 93 ATRHIFLIRHGEYHVDG-----SLEHLTELGREQAELTGKRLAEL--GLKFDKVVASTMVRATETADIILKHLPDDLKRV 165 (284)
T ss_pred hhceEEEEeccceeccC-----chhhcchhhHHHHHHHhHHHHHc--CCchhhhhhhhhhhhHHHHHHHHHhCCCcccee
Confidence 34899999999975331 12379999999999999999887 88999999999999999999992 33445
Q ss_pred cccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHh-------CCCcEEEEeC
Q 004941 602 QWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER-------QRAPVVVISH 674 (722)
Q Consensus 602 ~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~-------~~~~VLIVSH 674 (722)
..+.|.|-. ++.- .|. ...|. |-.--|..=-.|++..+..... ++.-.|||+|
T Consensus 166 s~~ll~EGa-------P~pp----dPp-~k~wr--------p~~~qy~rdgaRIEaafRryfhRA~p~QeedSy~liV~H 225 (284)
T KOG4609|consen 166 SCPLLREGA-------PYPP----DPP-VKHWR--------PLDPQYYRDGARIEAAFRRYFHRASPSQEEDSYELIVCH 225 (284)
T ss_pred cccccccCC-------CCCC----CCC-cccCC--------ccChHhhhcchHHHHHHHHHHhhcCcccccccEEEEEee
Confidence 556666632 1110 000 11111 1111122223577777776632 1344899999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceEEEE
Q 004941 675 QAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKR 717 (722)
Q Consensus 675 g~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~~~r 717 (722)
++|||-+++..+.+|++.|.++++.+|+|+.|+..+.|....|
T Consensus 226 aNVIRY~icRALq~PpegWlR~nlnh~SiTWlti~PsG~vsvr 268 (284)
T KOG4609|consen 226 ANVIRYFICRALQFPPEGWLRMNLNHCSITWLTISPSGHVSVR 268 (284)
T ss_pred cchhhhhhhhhhcCCcchhheecccCcceEEEEEccCCcEEEE
Confidence 9999999999999999999999999999999999877766554
No 52
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=99.53 E-value=9e-14 Score=135.45 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=101.3
Q ss_pred CccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhcC-CCccccccc
Q 004941 528 PRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAG-FPKIQWRAL 606 (722)
Q Consensus 528 ~~~IyLvRHGes~~n~~~~~~GD~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~g-~~v~~~~~L 606 (722)
+|+|||+|||++.+...+.-..|.+||++|+++++.+|++|+.+ ...+|.|+|||+.||+|||+.+.. +.......+
T Consensus 1 m~~L~LmRHgkA~~~~~~~~D~dR~Lt~~G~~ea~~~a~~L~~~--~~~~D~VL~Spa~Ra~QTae~v~~~~~~~~~~~~ 78 (163)
T COG2062 1 MMRLYLMRHGKAEWAAPGIADFDRPLTERGRKEAELVAAWLAGQ--GVEPDLVLVSPAVRARQTAEIVAEHLGEKKVEVF 78 (163)
T ss_pred CceEEEeecccccccCCCCCCccCcCCHHHHHHHHHHHHHHHhc--CCCCCEEEeChhHHHHHHHHHHHHhhCcccceec
Confidence 47899999999998876533349999999999999999999987 568999999999999999998821 111111112
Q ss_pred ccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEeCHHHHHHHHHHHh
Q 004941 607 DEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFA 686 (722)
Q Consensus 607 ~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~~~~VLIVSHg~vIr~Ll~~l~ 686 (722)
.|+.+ ++ ... -+...+.++...-++++||+|...+..|...+.
T Consensus 79 ~~l~p--------------------------------~~-d~~----~~l~~l~~~~d~v~~vllVgH~P~l~~l~~~L~ 121 (163)
T COG2062 79 EELLP--------------------------------NG-DPG----TVLDYLEALGDGVGSVLLVGHNPLLEELALLLA 121 (163)
T ss_pred cccCC--------------------------------CC-CHH----HHHHHHHHhcccCceEEEECCCccHHHHHHHHc
Confidence 22111 11 011 112223333334568999999999999999998
Q ss_pred CCCCCCCCCcccCCcEEEEEEECCC
Q 004941 687 DRPLKEIPHIETPLHTIIEIQMGVT 711 (722)
Q Consensus 687 g~~~~~~~~l~~p~~sI~el~~~~~ 711 (722)
+. .-....+|.++|..++++..
T Consensus 122 ~~---~~~~~~fptsgia~l~~~~~ 143 (163)
T COG2062 122 GG---ARLPVKFPTSGIAVLEFDGK 143 (163)
T ss_pred cc---cccccCCCcccEEEEEeccc
Confidence 75 22345789999999998743
No 53
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.52 E-value=3e-14 Score=127.34 Aligned_cols=79 Identities=25% Similarity=0.418 Sum_probs=72.8
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEecCCCCCceeeccCCC
Q 004941 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPN 111 (722)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g~N 111 (722)
-|+|+|++|++.+++.++|+||+++||+|++ +++|...+.+.|..++++|... ++||||++++ +...+.||.|+|
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~--~~~l~~~~~~~W~~~v~lp~~~-~ieYky~~~~--~~~~~~WE~~~n 76 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHS--YIPLQYVKDGFWSASVSLPVDT-HVEWKFVLVE--NGQVTRWEECSN 76 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCc--cccCcCCCCCCEEEEEEecCCC-cEEEEEEEEc--CCCEEEeecCCC
Confidence 4899999999999999999999999999996 8999999999999999999987 8999999975 456778999999
Q ss_pred cccc
Q 004941 112 RLLT 115 (722)
Q Consensus 112 R~l~ 115 (722)
|.++
T Consensus 77 r~~~ 80 (95)
T cd05813 77 RLLE 80 (95)
T ss_pred eEEE
Confidence 9988
No 54
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=99.50 E-value=6.2e-14 Score=128.66 Aligned_cols=82 Identities=27% Similarity=0.355 Sum_probs=71.9
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccCccc-------CCCceEEEEecCCCC--CceeEEEEEecCCCCC
Q 004941 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE-------SASMWELSFVVPPNH--ETLDFKFLLKPKYGNG 102 (722)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~-------~~~~W~~~l~~~~~~--~~leyKf~~~~~~~~~ 102 (722)
-|||.|.|--+++++.++|+||.|+||+||+++|++|+.+ ..++|.+++++|... .+|||||++++ ..
T Consensus 2 ~~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~~~---~~ 78 (112)
T cd05806 2 LFRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLKRE---AG 78 (112)
T ss_pred EEEEEEEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEEeC---CC
Confidence 4899999988999999999999999999999999999997 456899999999985 58999999975 33
Q ss_pred ceeec---cCCCccccc
Q 004941 103 PCIVE---EGPNRLLTG 116 (722)
Q Consensus 103 ~~~wE---~g~NR~l~~ 116 (722)
.+.|| ..+||.+..
T Consensus 79 ~v~WE~~~~~~nr~~~~ 95 (112)
T cd05806 79 ALIWEGNGPHHDRCCVY 95 (112)
T ss_pred eeEEecCCCCCCeEEec
Confidence 78899 778998543
No 55
>KOG3734 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=3.4e-13 Score=140.35 Aligned_cols=163 Identities=23% Similarity=0.255 Sum_probs=118.1
Q ss_pred CCCCccEEEecccccccccCCC------------c---------------C---C---CCCCCHHHHHHHHHHHHHHHHH
Q 004941 525 HLTPRPILLTRHGESRDNVRGR------------I---------------G---G---DTILSDAGEIYAKKLANFVEKR 571 (722)
Q Consensus 525 ~~~~~~IyLvRHGes~~n~~~~------------~---------------~---G---D~pLTe~G~~QA~~L~~~L~~~ 571 (722)
+...+.|++|||||+.++..+. + . + |+|||..|..|++..|+.|...
T Consensus 9 ~~~~~~i~vmRHgERvD~if~~~W~~~~~~~~~~y~~~d~n~p~~l~qr~~~~~~y~~d~pit~~g~~~~~~~gr~l~~a 88 (272)
T KOG3734|consen 9 IDVPRNIFVMRHGERVDNIFGKLWLKTCARPDGKYVPDDMNMPFRLPQRIRSPKGYPIDPPITVSGFIQCKLIGRELLNA 88 (272)
T ss_pred cCCCceEEEEEcccccccccchhhhhhhcCCCCCcCCCCccCCccccccccCcccCccCCCccchhHHHHHHHHHHHHhc
Confidence 4556899999999997732221 1 1 1 8999999999999999999876
Q ss_pred hcCCCCCEEEEcChHHHHHHHHHh---cC----CCcccccccccccCCcCCC-----CCHHHHHhhChHHHHHHhcCc-C
Q 004941 572 LKSERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDEINAGVCDG-----MTYEEIKKNMPEEYEARKKDK-L 638 (722)
Q Consensus 572 l~~~~~~~V~sSpl~RaiQTA~~i---~g----~~v~~~~~L~Ei~~G~~eg-----~t~~ei~~~~p~~~~~~~~d~-~ 638 (722)
+..++.||+||..||+|||..+ .+ ..+.+++.|-|...-.-.+ .+..++....+..-. ..++ +
T Consensus 89 --~~~i~~ifcSPs~r~VqTa~~i~~~~g~e~~~~i~vePgL~e~~~~~~~~~~p~~is~~el~~~~~~VD~--~y~P~~ 164 (272)
T KOG3734|consen 89 --GIAIDVIFCSPSLRCVQTAAKIKKGLGIEKKLKIRVEPGLFEPEKWPKDGKFPFFISPDELKFPGFPVDL--NYDPVY 164 (272)
T ss_pred --CCCcceeecCCchhHHHHHHHHHHhhchhcCeeEEecchhcchhhhcccCCCCCcCCHHHHhccCCCccc--ccchhh
Confidence 7789999999999999999988 33 5677888888863221111 234444432211000 0000 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhC--CCcEEEEeCHHHHHHHHHHHhCCCCC
Q 004941 639 RYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRALYAYFADRPLK 691 (722)
Q Consensus 639 ~~r~P~gES~~dv~~Rl~~~l~eL~~~--~~~VLIVSHg~vIr~Ll~~l~g~~~~ 691 (722)
...+-++||++++..|+..++.+|..+ ++++|||+||..+....+.|.|.+..
T Consensus 165 ~~~~~~~es~e~~~~R~~~~~k~i~~k~~~~~lLIV~H~~sv~~~~~~l~~~~~~ 219 (272)
T KOG3734|consen 165 KETPRWGESLEDCNDRIQKVFKAIADKYPNENLLIVAHGSSVDTCSAQLQGLPVR 219 (272)
T ss_pred hhcccccccHHHHHHHHHHHHHHHHHhcCCCceEEEeccchHHHHHHHhcCCCce
Confidence 122447899999999999999999875 66799999999999999999885543
No 56
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=99.46 E-value=6e-13 Score=133.97 Aligned_cols=118 Identities=17% Similarity=0.172 Sum_probs=79.3
Q ss_pred CccEEEecccccccccCCCcCC-CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc-CCCcccccc
Q 004941 528 PRPILLTRHGESRDNVRGRIGG-DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-GFPKIQWRA 605 (722)
Q Consensus 528 ~~~IyLvRHGes~~n~~~~~~G-D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~-g~~v~~~~~ 605 (722)
.++|||+||||+.+...+.... +.|||++|++||++++++|.+. ...+.|||||+.||+|||+.+. +.++..++.
T Consensus 54 ~~~L~LiRHGet~~~~~~~~~sD~RpLTerG~~qA~~lg~~L~~~---~~~d~I~sSpa~Ra~qTAe~ia~~~~v~~~~~ 130 (201)
T PRK15416 54 HPVVVLFRHAERCDRSDNQCLSDKTGITVKGTQDARELGKAFSAD---IPDYDLYSSNTVRTIQSATWFSAGKKLTVDKR 130 (201)
T ss_pred CCEEEEEeCccccCccCCCCCCCCCCCCHHHHHHHHHHHHHHhCC---CCCCEEEECCCHHHHHHHHHHhcCCCcEecHH
Confidence 3679999999984222121111 3689999999999999988643 2337999999999999999983 334444444
Q ss_pred cccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEeCHHHHHHHHHHH
Q 004941 606 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYF 685 (722)
Q Consensus 606 L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~~~~VLIVSHg~vIr~Ll~~l 685 (722)
|.|++.+ ....+..++.+. .+++||||+|...+..|....
T Consensus 131 Lye~~~~--------------------------------------~~~~i~~~i~~~--~~~tVLIVGHnp~i~~La~~~ 170 (201)
T PRK15416 131 LSDCGNG--------------------------------------IYSAIKDLQRKS--PDKNIVIFTHNHCLTYIAKDK 170 (201)
T ss_pred HhhcCch--------------------------------------hHHHHHHHHHhC--CCCEEEEEeCchhHHHHHHHh
Confidence 4444321 111222223222 237899999999999999876
Q ss_pred hCC
Q 004941 686 ADR 688 (722)
Q Consensus 686 ~g~ 688 (722)
.+.
T Consensus 171 ~~~ 173 (201)
T PRK15416 171 RGV 173 (201)
T ss_pred cCC
Confidence 653
No 57
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.46 E-value=2.7e-13 Score=132.99 Aligned_cols=138 Identities=20% Similarity=0.271 Sum_probs=101.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-EVAALAMEDMISWMH 400 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~-~va~~~l~d~~~~l~ 400 (722)
-|+|+|+||+||||++++||+.|+.. ++|.|..-....+.. -..+|...++..|+.++ ++.+.++.
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~-----F~D~D~~Ie~~~g~s-I~eIF~~~GE~~FR~~E~~vl~~l~~------- 70 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLP-----FIDTDQEIEKRTGMS-IAEIFEEEGEEGFRRLETEVLKELLE------- 70 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCC-----cccchHHHHHHHCcC-HHHHHHHHhHHHHHHHHHHHHHHHhh-------
Confidence 48999999999999999999999887 677777755444422 25688889999999988 45555444
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCCh-HHHHHHHHHHHHhh
Q 004941 401 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRLANY 478 (722)
Q Consensus 401 ~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~-e~a~~df~~Ri~~y 478 (722)
.+..|| ||....-..+..+.+ .+++ .++||+ .+.+++.+|+.. ...+|.+.+. ++ +.+.+.|.+|.+.|
T Consensus 71 -~~~~Vi--aTGGG~v~~~enr~~l~~~g-~vv~L~---~~~e~l~~Rl~~-~~~RPll~~~-~~~~~l~~L~~~R~~~Y 141 (172)
T COG0703 71 -EDNAVI--ATGGGAVLSEENRNLLKKRG-IVVYLD---APFETLYERLQR-DRKRPLLQTE-DPREELEELLEERQPLY 141 (172)
T ss_pred -cCCeEE--ECCCccccCHHHHHHHHhCC-eEEEEe---CCHHHHHHHhcc-ccCCCcccCC-ChHHHHHHHHHHHHHHH
Confidence 343444 455444444444444 4444 688888 688999999984 4558999988 88 66889999999999
Q ss_pred hcc
Q 004941 479 EKV 481 (722)
Q Consensus 479 ~~~ 481 (722)
++.
T Consensus 142 ~e~ 144 (172)
T COG0703 142 REV 144 (172)
T ss_pred HHh
Confidence 875
No 58
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.45 E-value=1.7e-12 Score=138.81 Aligned_cols=145 Identities=18% Similarity=0.196 Sum_probs=99.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCC-CCCCCHHH-HHHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADF-FRADNPEG-MEARNEVAALAMEDMIS 397 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~-~~~~~~~~-~~~~~~va~~~l~d~~~ 397 (722)
+.+|+|+|+|||||||+|++|++++. ...+++.|++|+...+......+ +....+.. .+...+.+..++
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----- 72 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAAL----- 72 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHH-----
Confidence 46899999999999999999999972 23488889998866543321111 21111211 122223333332
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004941 398 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 476 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~ 476 (722)
..|..+|+|+++..+..|+.+.++ .+.++.+.++.+.| +.+++.+|+..|.. . . .+++.++.+++|++
T Consensus 73 ---~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~-~~e~~~~R~~~R~~----~--~-~~~~~i~~~~~~~~ 141 (300)
T PHA02530 73 ---KSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDV-PVEELVKRNRKRGE----R--A-VPEDVLRSMFKQMK 141 (300)
T ss_pred ---HcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCC-CHHHHHHHHHccCc----C--C-CCHHHHHHHHHHHH
Confidence 378999999999999999999888 66777777777666 57788888876621 1 1 46788899999999
Q ss_pred hhhccccc
Q 004941 477 NYEKVYEP 484 (722)
Q Consensus 477 ~y~~~yEp 484 (722)
.|...-.|
T Consensus 142 ~~~~~~~p 149 (300)
T PHA02530 142 EYRGLVWP 149 (300)
T ss_pred HhcCCCCc
Confidence 88664333
No 59
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.41 E-value=3.8e-12 Score=145.30 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=98.3
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
...|.||+|+|+|||||||+|+.+++.+++. ++|.|.+. .++.....++.+|.
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~-----~vn~D~lg-------------------~~~~~~~~a~~~L~--- 418 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYK-----HVNADTLG-------------------STQNCLTACERALD--- 418 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCe-----EECcHHHH-------------------HHHHHHHHHHHHHh---
Confidence 3578999999999999999999999876655 66665441 13344455666666
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 004941 397 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 475 (722)
Q Consensus 397 ~~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri 475 (722)
.|..||+|+||.+++.|+.+.++ .++|+.+.++.+.++ .+++++|++.|.. .+.++..-++.++..
T Consensus 419 -----~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p-~e~~~~Rn~~R~~--~~~s~~~vp~~v~~~----- 485 (526)
T TIGR01663 419 -----QGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAP-LAQAKHNIAFREL--SDSAHIKIKDMVFNG----- 485 (526)
T ss_pred -----CCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHHHHHHHhhcc--CCcccCCCCHHHHHH-----
Confidence 89999999999999999999999 778999999988885 6677777776654 223333123555444
Q ss_pred HhhhcccccCC--CC-CeEEEeec
Q 004941 476 ANYEKVYEPVD--EG-SYIKMIDM 496 (722)
Q Consensus 476 ~~y~~~yEpl~--e~-~yik~i~~ 496 (722)
|.+.|||.+ |+ .-|..||+
T Consensus 486 --~~k~fE~Pt~~EGF~~I~~v~f 507 (526)
T TIGR01663 486 --MKKKFEAPALAEGFIAIHEINF 507 (526)
T ss_pred --HHhhCCCCCcccCceEEEEEeC
Confidence 444455554 33 45666676
No 60
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.41 E-value=7.8e-13 Score=153.03 Aligned_cols=146 Identities=16% Similarity=0.148 Sum_probs=112.2
Q ss_pred ccccCCCCccccchhhhhhhccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechhhHHHhhcCCC
Q 004941 290 TETKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRRLKHGVNQ 368 (722)
Q Consensus 290 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~-~g~~t~v~~~ddyRr~~~g~~~ 368 (722)
.......|++...+..+++......+...++.+|||+|+|||||||+|++|+++|++ .+..+.++|.|.+|+.+. .
T Consensus 362 l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~---g 438 (568)
T PRK05537 362 LREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS---S 438 (568)
T ss_pred HHCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc---C
Confidence 356788899998888888988888888888999999999999999999999999997 778888999998877443 3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH-cCCceEEEEEEEeCCHHHHHHH
Q 004941 369 SADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMA-EGNCKIIFLETICNDRDIIERN 447 (722)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~-~~~~~viflE~~c~d~~~i~~r 447 (722)
...|...+++..++++..++..++. .|.+||+|++++.++.|+.++++. +.+ .+++|.+.+ +.+++.+|
T Consensus 439 e~~f~~~er~~~~~~l~~~a~~v~~--------~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~-p~e~l~~R 508 (568)
T PRK05537 439 ELGFSKEDRDLNILRIGFVASEITK--------NGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVAT-PLEVCEQR 508 (568)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--------CCCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcC-CHHHHHHh
Confidence 3445544555556655566665555 899999999999999999999994 434 233333334 45666666
Q ss_pred H
Q 004941 448 I 448 (722)
Q Consensus 448 i 448 (722)
+
T Consensus 509 ~ 509 (568)
T PRK05537 509 D 509 (568)
T ss_pred c
Confidence 5
No 61
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.41 E-value=2.3e-12 Score=124.59 Aligned_cols=113 Identities=22% Similarity=0.177 Sum_probs=84.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 401 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~~ 401 (722)
+|+|+|+|||||||+|+.|++.+.+.+.+..+++.|.+|+.+.. ...|..+.+.+.++.....++.. .+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~---~~~~~~~~~~~~~~~~~~~a~~l--------~~ 69 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNK---DLGFSREDREENIRRIAEVAKLL--------AD 69 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhh---ccCCCcchHHHHHHHHHHHHHHH--------Hh
Confidence 58999999999999999999999888888888999888874432 22344444555555444444443 34
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHH
Q 004941 402 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 446 (722)
Q Consensus 402 ~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ 446 (722)
+|.+||+|+++..+..|..++++.+ +.++.++.+.|+.+.+.+|
T Consensus 70 ~G~~VIid~~~~~~~~R~~~~~l~~-~~~~~~i~l~~~~e~~~~R 113 (149)
T cd02027 70 AGLIVIAAFISPYREDREAARKIIG-GGDFLEVFVDTPLEVCEQR 113 (149)
T ss_pred CCCEEEEccCCCCHHHHHHHHHhcC-CCCEEEEEEeCCHHHHHHh
Confidence 8999999999999999999998865 6778888888875444433
No 62
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=99.39 E-value=1.9e-12 Score=122.60 Aligned_cols=111 Identities=24% Similarity=0.317 Sum_probs=97.4
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
.++..+|||+||+||||||+|-+|.+.|...|.-++++|.|.. ++|++.+.+|..+++.+..++..++|+...+
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNv---RhGLN~DL~F~a~dR~ENIRRigeVaKLFAD--- 101 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNV---RHGLNKDLGFKAEDRNENIRRIGEVAKLFAD--- 101 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccc---ccccccccCcchhhhhhhHHHHHHHHHHHhc---
Confidence 4578999999999999999999999999999999999999777 6899999999999999999999999998555
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCH
Q 004941 397 SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDR 441 (722)
Q Consensus 397 ~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~ 441 (722)
.|.+.|..-..+.+..|+..+++.+.+ -|||+..+.+
T Consensus 102 -----ag~iciaSlISPYR~dRdacRel~~~~---~FiEvfmdvp 138 (207)
T KOG0635|consen 102 -----AGVICIASLISPYRKDRDACRELLPEG---DFIEVFMDVP 138 (207)
T ss_pred -----cceeeeehhcCchhccHHHHHHhccCC---CeEEEEecCc
Confidence 899999888899999999999995544 2666655533
No 63
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.33 E-value=2.2e-11 Score=116.83 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=77.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhc--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG--VNQSADFFRADNPEGMEARNEVAALAMEDMISWM 399 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g--~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l 399 (722)
+|+|+|+|||||||+|+.|++.+++. +++.|++|+.... ......+.....+...+.+.+.+.. .+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~-----~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l 68 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAP-----FIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLA-------KL 68 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCE-----EEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHH-------HH
Confidence 58999999999999999999987654 6777777652110 0011122222223323333222221 12
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 004941 400 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 452 (722)
Q Consensus 400 ~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~ 452 (722)
...|..+|+|+++..+..|+.+..++ ++..+.++.+.|+ .+++++|+.+|.
T Consensus 69 ~~~~~~vVid~~~~~~~~r~~~~~~~-~~~~~~~v~l~~~-~~~~~~R~~~R~ 119 (150)
T cd02021 69 ASAGEGVVVACSALKRIYRDILRGGA-ANPRVRFVHLDGP-REVLAERLAARK 119 (150)
T ss_pred HhCCCCEEEEeccccHHHHHHHHhcC-CCCCEEEEEEECC-HHHHHHHHHhcc
Confidence 23688999999999999998888887 6677778887885 778888888774
No 64
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.33 E-value=2.1e-11 Score=129.00 Aligned_cols=134 Identities=20% Similarity=0.303 Sum_probs=79.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-NEVAALAMEDMISWMH 400 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~-~~va~~~l~d~~~~l~ 400 (722)
||+|+|+|||||||+|+.|++++...+.++.+++.+..+ .... .|.+...++..+.. ...+...+
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-----~~~~-~y~~~~~Ek~~R~~l~s~v~r~l-------- 68 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-----IDRN-DYADSKKEKEARGSLKSAVERAL-------- 68 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH------TTS-SS--GGGHHHHHHHHHHHHHHHH--------
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-----cchh-hhhchhhhHHHHHHHHHHHHHhh--------
Confidence 899999999999999999999999988999999865553 2222 25444444332221 12222222
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004941 401 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 476 (722)
Q Consensus 401 ~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~ 476 (722)
....+||+|+.|..+..|..+.++ .+.+.....|.|.|+.+.++++|..+... ..| .++.++++..|++
T Consensus 69 s~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~--~~~-----~~e~i~~m~~RfE 138 (270)
T PF08433_consen 69 SKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEP--ERY-----PEETIDDMIQRFE 138 (270)
T ss_dssp TT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S----S------HHHHHHHHHH--
T ss_pred ccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCC--CCC-----CHHHHHHHHHHhc
Confidence 256999999999999999999999 66777777888888888888888543211 112 3666666666654
No 65
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.31 E-value=1.5e-11 Score=128.49 Aligned_cols=112 Identities=22% Similarity=0.208 Sum_probs=77.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGME-ARNEVAALAMEDMISWMH 400 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~-~~~~va~~~l~d~~~~l~ 400 (722)
||+|+|+|||||||+|++|+++|...+.++.+++.|.+|+.... +....+...+ ....+++.++
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~-------~~~~~e~~~~~~~~~~i~~~l-------- 65 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV-------WKEKYEEFIRDSTLYLIKTAL-------- 65 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH-------hhHHhHHHHHHHHHHHHHHHH--------
Confidence 58999999999999999999999988889999988888764310 1111111111 1112233333
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHH
Q 004941 401 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 448 (722)
Q Consensus 401 ~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri 448 (722)
+.|..||+|++|..+..|..+.++ ...++.+..+.+.|+.+.+++||.
T Consensus 66 ~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~ 114 (249)
T TIGR03574 66 KNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNI 114 (249)
T ss_pred hCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHH
Confidence 368899999999999988888887 456666666666676555555443
No 66
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.29 E-value=2.9e-11 Score=120.41 Aligned_cols=117 Identities=25% Similarity=0.275 Sum_probs=85.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 397 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~ 397 (722)
+.+.+|+|+|+|||||||+|+.|+..+...+..+.+++.|++|+.+. ....|..+.....++.+..++...+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~----- 87 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLN---KDLGFSEEDRKENIRRIGEVAKLFV----- 87 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhc---cccCCCHHHHHHHHHHHHHHHHHHH-----
Confidence 46789999999999999999999999987777778899988887442 2334444444444555545555443
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHH
Q 004941 398 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 446 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ 446 (722)
..|.+||+|++++.+..|+.++.+.+.. .++++.+.|+.+.+++|
T Consensus 88 ---~~G~~VI~d~~~~~~~~r~~~~~~~~~~-~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 88 ---RNGIIVITSFISPYRADRQMVRELIEKG-EFIEVFVDCPLEVCEQR 132 (184)
T ss_pred ---cCCCEEEEecCCCCHHHHHHHHHhCcCC-CeEEEEEeCCHHHHHHh
Confidence 4899999999999999999999984422 45555566765444444
No 67
>PRK06762 hypothetical protein; Provisional
Probab=99.29 E-value=5.8e-11 Score=115.98 Aligned_cols=114 Identities=15% Similarity=0.054 Sum_probs=76.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 399 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l 399 (722)
|.+|+|+|+|||||||+|++|+++++ ....+++.|.+|+....... . .+....+.+.+.++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~---~~~~~i~~D~~r~~l~~~~~---~---~~~~~~~~~~~~~~~~~------- 65 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG---RGTLLVSQDVVRRDMLRVKD---G---PGNLSIDLIEQLVRYGL------- 65 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEecHHHHHHHhccccC---C---CCCcCHHHHHHHHHHHH-------
Confidence 67999999999999999999999973 35667899999875432111 0 11112233333333333
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHh
Q 004941 400 HEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLK 451 (722)
Q Consensus 400 ~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r 451 (722)
+.|.+||+|+++.....|+.++++ ...+.++.++.+.++ .++..+|+..|
T Consensus 66 -~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap-~e~~~~R~~~R 116 (166)
T PRK06762 66 -GHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLS-FEETLRRHSTR 116 (166)
T ss_pred -hCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCC-HHHHHHHHhcc
Confidence 379999999999888888888888 455555555555565 44455555444
No 68
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.26 E-value=7.9e-11 Score=116.23 Aligned_cols=115 Identities=20% Similarity=0.183 Sum_probs=82.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 397 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~ 397 (722)
+.+.+|+|+|+|||||||+|+.|++.|...+.++.++|.|..|+... ....+..+++...++....++..+..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~---~~~~~~~~~r~~~~~~~~~~a~~~~~---- 74 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLS---KGLGFSKEDRDTNIRRIGFVANLLTR---- 74 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHh---cCCCCChhhHHHHHHHHHHHHHHHHh----
Confidence 45679999999999999999999999988788888899998877443 12234444555556665555554333
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHH
Q 004941 398 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 446 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ 446 (722)
.|.+||+|++++.+..|+.++.+.. . +.++.+.|+.+.+.+|
T Consensus 75 ----~g~~vi~~~~~~~~~~~~~l~~~~~-~--~~~v~l~~~~e~~~~R 116 (175)
T PRK00889 75 ----HGVIVLVSAISPYRETREEVRANIG-N--FLEVFVDAPLEVCEQR 116 (175)
T ss_pred ----CCCEEEEecCCCCHHHHHHHHhhcC-C--eEEEEEcCCHHHHHHh
Confidence 7999999999988788877777642 3 3445555664444444
No 69
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.24 E-value=6.2e-11 Score=118.12 Aligned_cols=135 Identities=21% Similarity=0.150 Sum_probs=88.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-NEVAALAMEDMISWMH 400 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~-~~va~~~l~d~~~~l~ 400 (722)
||+++|+|||||||+|+.|++.|...+.++..+ ..||++... .++++. --.+.|+.. .+-+..++...+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l-~kdy~~~i~----~DEslp-i~ke~yres~~ks~~rlldSal---- 72 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHL-EKDYLRGIL----WDESLP-ILKEVYRESFLKSVERLLDSAL---- 72 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhcccc-chhhhhhee----cccccc-hHHHHHHHHHHHHHHHHHHHHh----
Confidence 799999999999999999999998777776555 345655321 112222 122333322 222222444222
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004941 401 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 476 (722)
Q Consensus 401 ~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~ 476 (722)
....||+|+||.....|.++... .+....+-.|.+.|+.+.++++|.+ |- . |-+++.++.++.|++
T Consensus 73 -kn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~e-rg--e------pip~Evl~qly~RfE 139 (261)
T COG4088 73 -KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRE-RG--E------PIPEEVLRQLYDRFE 139 (261)
T ss_pred -cceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhcc-CC--C------CCCHHHHHHHHHhhc
Confidence 26899999999999988888777 5555556667777887778888833 21 1 246778777766654
No 70
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.24 E-value=2.5e-11 Score=143.02 Aligned_cols=129 Identities=20% Similarity=0.232 Sum_probs=95.7
Q ss_pred CCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004941 315 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 394 (722)
Q Consensus 315 ~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d 394 (722)
+.+++|.+|+|+|+|||||||+|++|+++|.+.+....+++.|++|+.+. ....|..+++...++.+.++|...++
T Consensus 455 ~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~---~~~~~~~~~r~~~~~~l~~~a~~~~~- 530 (632)
T PRK05506 455 RKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLN---RDLGFSDADRVENIRRVAEVARLMAD- 530 (632)
T ss_pred HhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccC---CCCCCCHHHHHHHHHHHHHHHHHHHh-
Confidence 33556899999999999999999999999998888889999999988443 23445555566667777666666555
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCC
Q 004941 395 MISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEE 461 (722)
Q Consensus 395 ~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~ 461 (722)
.|.+||+|++++.+..|+.++++.+.. .+.++.+.|+ .+.+.+|. .+|.|...
T Consensus 531 -------~G~~Vivda~~~~~~~R~~~r~l~~~~-~~~~v~L~~~-~e~~~~R~-----~r~L~~~~ 583 (632)
T PRK05506 531 -------AGLIVLVSFISPFREERELARALHGEG-EFVEVFVDTP-LEVCEARD-----PKGLYAKA 583 (632)
T ss_pred -------CCCEEEEECCCCCHHHHHHHHHhcccC-CeEEEEECCC-HHHHHhhC-----Ccchhhhc
Confidence 899999999999999999999884322 3344444454 55555552 24666544
No 71
>PRK13948 shikimate kinase; Provisional
Probab=99.23 E-value=9.6e-11 Score=117.12 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=95.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-EVAALAMEDMIS 397 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~-~va~~~l~d~~~ 397 (722)
.+..|+|+|+|||||||+++.|++.|++. ++|.|.+++...|... .++|....+..|+.++ ++++.++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~-----~iD~D~~ie~~~g~si-~~if~~~Ge~~fR~~E~~~l~~l~~---- 78 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLH-----FIDTDRYIERVTGKSI-PEIFRHLGEAYFRRCEAEVVRRLTR---- 78 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC-----EEECCHHHHHHHhCCH-HHHHHHhCHHHHHHHHHHHHHHHHh----
Confidence 46789999999999999999999999877 7788878877766433 3567777888888776 44444333
Q ss_pred HHhcCCeEEEEe--CCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 004941 398 WMHEGGQVGIFD--ATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 475 (722)
Q Consensus 398 ~l~~~G~vVIvD--Atn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri 475 (722)
.+..||.- ++...++.|+.++ +.+ .++||. .+.+.+.+|+.. ..+|...+....+.+.+.|.+|.
T Consensus 79 ----~~~~VIa~GgG~v~~~~n~~~l~---~~g-~vV~L~---~~~e~l~~Rl~~--~~RPll~~~~~~~~l~~l~~~R~ 145 (182)
T PRK13948 79 ----LDYAVISLGGGTFMHEENRRKLL---SRG-PVVVLW---ASPETIYERTRP--GDRPLLQVEDPLGRIRTLLNERE 145 (182)
T ss_pred ----cCCeEEECCCcEEcCHHHHHHHH---cCC-eEEEEE---CCHHHHHHHhcC--CCCCCCCCCChHHHHHHHHHHHH
Confidence 34454431 3344555555543 344 577887 468888999953 35788765412356677788888
Q ss_pred Hhhhc
Q 004941 476 ANYEK 480 (722)
Q Consensus 476 ~~y~~ 480 (722)
+.|++
T Consensus 146 ~~Y~~ 150 (182)
T PRK13948 146 PVYRQ 150 (182)
T ss_pred HHHHh
Confidence 88854
No 72
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.23 E-value=7.6e-11 Score=116.61 Aligned_cols=117 Identities=18% Similarity=0.136 Sum_probs=76.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC----CCC------CCC-CCHHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS----ADF------FRA-DNPEGMEARNEVAA 389 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~----~~~------~~~-~~~~~~~~~~~va~ 389 (722)
.+|+|+|+|||||||+|+.|++.+... ...++.|+|+......... ..+ +.+ .....|..+...+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 79 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEP---WLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVA 79 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCC---ccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHH
Confidence 489999999999999999999987532 1245677776644221111 001 111 11134555555555
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCC-CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 004941 390 LAMEDMISWMHEGGQVGIFDATNS-SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 451 (722)
Q Consensus 390 ~~l~d~~~~l~~~G~vVIvDAtn~-~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r 451 (722)
.+++ .|.+||+|+++. ....|+.++.+. +.++.+|.+.|++ +++.+|+..|
T Consensus 80 ~~l~--------~G~~VIvD~~~~~~~~~r~~~~~~~--~~~~~~v~l~~~~-~~l~~R~~~R 131 (175)
T cd00227 80 AMAR--------AGANVIADDVFLGRAALQDCWRSFV--GLDVLWVGVRCPG-EVAEGRETAR 131 (175)
T ss_pred HHHh--------CCCcEEEeeeccCCHHHHHHHHHhc--CCCEEEEEEECCH-HHHHHHHHhc
Confidence 5554 899999999998 677777777664 4668899999975 5666666654
No 73
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.23 E-value=1.4e-10 Score=117.16 Aligned_cols=119 Identities=25% Similarity=0.274 Sum_probs=89.5
Q ss_pred CCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004941 315 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 394 (722)
Q Consensus 315 ~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d 394 (722)
+.+++|.+|+|+|+|||||||+|+.|++.|...+..+.+++.|++|+.... ...|..+.+.+.++.+.++|..+++
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~---~~~~~~~~~~~~~~~l~~~a~~~~~- 94 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCS---DLGFSDADRKENIRRVGEVAKLMVD- 94 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhh---cCCcCcccHHHHHHHHHHHHHHHhh-
Confidence 345688999999999999999999999999877888889999988764432 2345555566667766666666555
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH-cCCceEEEEEEEeCCHHHHHHH
Q 004941 395 MISWMHEGGQVGIFDATNSSRKRRNMLMKMA-EGNCKIIFLETICNDRDIIERN 447 (722)
Q Consensus 395 ~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~-~~~~~viflE~~c~d~~~i~~r 447 (722)
.|.+||.+..++.++.|+.++++. +.+ +++|.+.|+ .+++.+|
T Consensus 95 -------~G~~VI~~~~~~~~~~R~~~r~~l~~~~--~i~V~L~~~-~e~~~~R 138 (198)
T PRK03846 95 -------AGLVVLTAFISPHRAERQMVRERLGEGE--FIEVFVDTP-LAICEAR 138 (198)
T ss_pred -------CCCEEEEEeCCCCHHHHHHHHHHcccCC--EEEEEEcCC-HHHHHhc
Confidence 899999988888999999999984 443 334445565 4555555
No 74
>COG4639 Predicted kinase [General function prediction only]
Probab=99.21 E-value=1.1e-10 Score=111.87 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=84.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 399 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l 399 (722)
+.|++|+|+|||||||+|+..- ...++++.|+.|+.+ |...+..-.....+..++.+.+.++..+.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~-------~~~~~lsld~~r~~l-g~~~~~e~sqk~~~~~~~~l~~~l~qrl~------ 67 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENF-------LQNYVLSLDDLRLLL-GVSASKENSQKNDELVWDILYKQLEQRLR------ 67 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhC-------CCcceecHHHHHHHh-hhchhhhhccccHHHHHHHHHHHHHHHHH------
Confidence 4689999999999999998752 456689999998854 22222222222233456666666666666
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHH
Q 004941 400 HEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERN 447 (722)
Q Consensus 400 ~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~r 447 (722)
.|...|+||||..++.|+.+.++ ..+++.+++|++..+...++.||
T Consensus 68 --~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRN 114 (168)
T COG4639 68 --RGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARN 114 (168)
T ss_pred --cCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHh
Confidence 89999999999999999999999 78899999999888766677766
No 75
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.20 E-value=1.4e-10 Score=111.17 Aligned_cols=138 Identities=19% Similarity=0.261 Sum_probs=85.4
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHhc
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNE-VAALAMEDMISWMHE 401 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~-va~~~l~d~~~~l~~ 401 (722)
|+|+|+|||||||+|+.|+++|++. .++.|++.+...+... ..++...+++.++.++. +... +.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~-----~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~--------~~~ 67 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLP-----FVDLDELIEQRAGMSI-PEIFAEEGEEGFRELEREVLLL--------LLT 67 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC-----EEEchHHHHHHcCCCH-HHHHHHHCHHHHHHHHHHHHHH--------Hhc
Confidence 7899999999999999999999887 6677777665544321 23343344444444432 2222 233
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhhhcc
Q 004941 402 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKV 481 (722)
Q Consensus 402 ~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~~y~~~ 481 (722)
.+..||.. .......... ++....+..++||+ .+.+++.+|+..+. .+|.++.. ..+.+.+.|.+|.+.|+++
T Consensus 68 ~~~~vi~~-g~~~i~~~~~-~~~~~~~~~~i~l~---~~~e~~~~R~~~r~-~r~~~~~~-~~~~~~~~~~~r~~~Y~~~ 140 (154)
T cd00464 68 KENAVIAT-GGGAVLREEN-RRLLLENGIVVWLD---ASPEELLERLARDK-TRPLLQDE-DPERLRELLEEREPLYREV 140 (154)
T ss_pred cCCcEEEC-CCCccCcHHH-HHHHHcCCeEEEEe---CCHHHHHHHhccCC-CCCCCCCC-CHHHHHHHHHHHHHHHHHh
Confidence 45555543 3222211111 22322244577776 36888888887764 57877766 5567778888888888765
No 76
>PRK00625 shikimate kinase; Provisional
Probab=99.20 E-value=1.1e-10 Score=115.73 Aligned_cols=137 Identities=13% Similarity=0.121 Sum_probs=86.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCC---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVN---QSADFFRADNPEGMEARNEVAALAMEDMISW 398 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~---~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~ 398 (722)
.|+|+|+|||||||+|+.|+++|++. ++|.|++-+...+.. ...++|...+++.++..+..+...+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~-----~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~----- 71 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLP-----FFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLP----- 71 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC-----EEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhc-----
Confidence 58999999999999999999999877 788887755444331 22455666777777777654333222
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhh
Q 004941 399 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 478 (722)
Q Consensus 399 l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~~y 478 (722)
....|| +.........+.+..+.. +..++|++ .+.+++.+|+..|.. .++.. ..+...+.|.+|.+.|
T Consensus 72 ---~~~~VI-s~GGg~~~~~e~~~~l~~-~~~Vv~L~---~~~e~l~~Rl~~R~~-~~~~~---~~~~~~~ll~~R~~~Y 139 (173)
T PRK00625 72 ---VIPSIV-ALGGGTLMIEPSYAHIRN-RGLLVLLS---LPIATIYQRLQKRGL-PERLK---HAPSLEEILSQRIDRM 139 (173)
T ss_pred ---cCCeEE-ECCCCccCCHHHHHHHhc-CCEEEEEE---CCHHHHHHHHhcCCC-CcccC---cHHHHHHHHHHHHHHH
Confidence 233444 233333333333333433 44588888 467888999876422 11121 3466778889999998
Q ss_pred hc
Q 004941 479 EK 480 (722)
Q Consensus 479 ~~ 480 (722)
++
T Consensus 140 ~~ 141 (173)
T PRK00625 140 RS 141 (173)
T ss_pred HH
Confidence 76
No 77
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.18 E-value=6.4e-11 Score=116.98 Aligned_cols=116 Identities=18% Similarity=0.187 Sum_probs=76.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 397 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~ 397 (722)
+.|.+|+|+|+|||||||+|+.|+++|...+..+.+++.|.+|+.... .+|......+...+...++..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~----~~~~~~~~~~~~~~~~~l~~~------- 73 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGH----YGYDKQSRIEMALKRAKLAKF------- 73 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCC----CCCCHHHHHHHHHHHHHHHHH-------
Confidence 357799999999999999999999999877777888999999875421 122221122222222222222
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHH
Q 004941 398 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIR 449 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~ 449 (722)
+...|.+||+|+++..++.++.++.+.. .+.++|+. | +.+.+.+|+.
T Consensus 74 -l~~~g~~VI~~~~~~~~~~~~~~~~~~~-~~~~v~l~--~-~~e~~~~R~~ 120 (176)
T PRK05541 74 -LADQGMIVIVTTISMFDEIYAYNRKHLP-NYFEVYLK--C-DMEELIRRDQ 120 (176)
T ss_pred -HHhCCCEEEEEeCCcHHHHHHHHHhhcC-CeEEEEEe--C-CHHHHHHhch
Confidence 3347999999999987767777776643 23344444 4 4566666654
No 78
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.18 E-value=3.9e-10 Score=109.83 Aligned_cols=109 Identities=20% Similarity=0.309 Sum_probs=70.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH------HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR------RLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR------r~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
|+|+|+|||||||+|+.|++.+++. +++.|++. +...+ ..+........++.+.+.+...+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~-----~v~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~--- 68 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAK-----FIEGDDLHPAANIEKMSAG----IPLNDDDRWPWLQNLNDASTAAAA--- 68 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCe-----EEeCccccChHHHHHHHcC----CCCChhhHHHHHHHHHHHHHHHHh---
Confidence 5799999999999999999998644 66777752 22222 122222233333333333333333
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 004941 397 SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 452 (722)
Q Consensus 397 ~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~ 452 (722)
.|..+|+|+|+..+..|+.++ ..+..+.++.+.|+ .+++.+|++.|.
T Consensus 69 -----~~~~~Vi~~t~~~~~~r~~~~---~~~~~~~~i~l~~~-~e~~~~R~~~R~ 115 (163)
T TIGR01313 69 -----KNKVGIITCSALKRHYRDILR---EAEPNLHFIYLSGD-KDVILERMKARK 115 (163)
T ss_pred -----cCCCEEEEecccHHHHHHHHH---hcCCCEEEEEEeCC-HHHHHHHHHhcc
Confidence 567779999998888787666 34555555666664 678888887764
No 79
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.12 E-value=8.9e-10 Score=119.86 Aligned_cols=126 Identities=19% Similarity=0.156 Sum_probs=78.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhhHH-----HhhcCCCCCCCCCCCCHHHHHHHHHHHH------
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR-----LKHGVNQSADFFRADNPEGMEARNEVAA------ 389 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~-~~g~~t~v~~~ddyRr-----~~~g~~~~~~~~~~~~~~~~~~~~~va~------ 389 (722)
+++|+|+||+||||+++.|++.|. ..|+++.+++.||+-. ...+... ...|...+....+.++..+.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~-~~~~k~~R~~i~~~le~~v~a~~~g~ 79 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREI-PSQWKQFRQELLKYLEHFLVAVINGS 79 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCc-HHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 478999999999999999999997 6899999999998731 0011111 11111111111111111110
Q ss_pred ----------HHHHHHHHHHhcC------------------------CeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEE
Q 004941 390 ----------LAMEDMISWMHEG------------------------GQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFL 434 (722)
Q Consensus 390 ----------~~l~d~~~~l~~~------------------------G~vVIvDAtn~~~~~R~~~~~l-~~~~~~vifl 434 (722)
.+..+.+.+|.++ +..+|+|++|..+..|..+.++ ...+..+..|
T Consensus 80 ~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V 159 (340)
T TIGR03575 80 ELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQL 159 (340)
T ss_pred cccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 0111111333333 4579999999999999999999 6667777777
Q ss_pred EEEeCCHHHHHHHH
Q 004941 435 ETICNDRDIIERNI 448 (722)
Q Consensus 435 E~~c~d~~~i~~ri 448 (722)
.+.|+.+.+++||-
T Consensus 160 ~ld~ple~~l~RN~ 173 (340)
T TIGR03575 160 FLDCPVESCLLRNK 173 (340)
T ss_pred EEeCCHHHHHHHHh
Confidence 77887555555553
No 80
>PLN02950 4-alpha-glucanotransferase
Probab=99.11 E-value=1.4e-10 Score=140.05 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=73.9
Q ss_pred EEEEEEecccC-CCcEEEEecCCCccCCCCccccccCcccCC---CceEEEEecCCCCCceeEEEEEecCCCCCceeecc
Q 004941 33 VSLKMVNIKLK-GDLIPHVYGSVPLVGSWDSSKALAMGRESA---SMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEE 108 (722)
Q Consensus 33 v~lkv~aP~l~-~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~---~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~ 108 (722)
|+|+.++|... .++.|+|+||.++||+||++||++|+.+++ +.|++++++|.. ..+||||++++.+ ...+.||.
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~-~~ieYKYv~v~~~-g~vi~WE~ 86 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEG-FSCEYSYYVVDDN-KNVLRWEA 86 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCC-CeEEEEEEEEeCC-Cceeeeec
Confidence 66677778776 699999999999999999999999987754 489999999994 5799999998754 55678999
Q ss_pred CCCcccccCCCC
Q 004941 109 GPNRLLTGGALQ 120 (722)
Q Consensus 109 g~NR~l~~~~~~ 120 (722)
|+||++++|...
T Consensus 87 g~NR~l~lp~~~ 98 (909)
T PLN02950 87 GKKRKLVLPEGL 98 (909)
T ss_pred CCCeeEECCccc
Confidence 999999999753
No 81
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.09 E-value=1.1e-09 Score=107.60 Aligned_cols=141 Identities=15% Similarity=0.203 Sum_probs=86.0
Q ss_pred EccCCCChHHHHHHHHHHHhhcCCceEEEec-hhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 004941 326 VGLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQ 404 (722)
Q Consensus 326 vGLPGSGKSTlAr~La~~L~~~g~~t~v~~~-ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~~~G~ 404 (722)
+|+|||||||+|+.|+..++...++.|++.. ..+|+...|. .+.+.........+...+... +..+|.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 69 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGE----PLNDDDRKPWLQALNDAAFAM-------QRTNKV 69 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCC----CCChhhHHHHHHHHHHHHHHH-------HHcCCc
Confidence 5999999999999999999866444443321 0122222121 111111222233333333322 223456
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhhhccccc
Q 004941 405 VGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEP 484 (722)
Q Consensus 405 vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~~y~~~yEp 484 (722)
.||+ +++..+..|+.+++ .+..+.||.+.|+ .+++++|++.|.. +++ +++.+ ..|...|||
T Consensus 70 ~viv-~s~~~~~~r~~~~~---~~~~~~~v~l~a~-~~~l~~Rl~~R~~---~~a---~~~vl--------~~Q~~~~ep 130 (163)
T PRK11545 70 SLIV-CSALKKHYRDLLRE---GNPNLSFIYLKGD-FDVIESRLKARKG---HFF---KTQML--------VTQFETLQE 130 (163)
T ss_pred eEEE-EecchHHHHHHHHc---cCCCEEEEEEECC-HHHHHHHHHhccC---CCC---CHHHH--------HHHHHHcCC
Confidence 6666 89998888877665 5667888888884 7899999998853 343 56655 455667888
Q ss_pred CCCC-CeEEEeec
Q 004941 485 VDEG-SYIKMIDM 496 (722)
Q Consensus 485 l~e~-~yik~i~~ 496 (722)
++++ ..+..+|.
T Consensus 131 ~~~~e~~~~~id~ 143 (163)
T PRK11545 131 PGADETDVLVVDI 143 (163)
T ss_pred CCCCCCCEEEEeC
Confidence 8754 45666776
No 82
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.04 E-value=6.4e-09 Score=105.31 Aligned_cols=126 Identities=12% Similarity=0.090 Sum_probs=81.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCC-----C------CCCCCCH-H---HHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-----D------FFRADNP-E---GMEA 383 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~-----~------~~~~~~~-~---~~~~ 383 (722)
.+.+|+++|+||+||||+|+.|++.++.. .++..|-.|+...+..... . ++.+... . +|..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~----~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~ 77 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAID----IVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLD 77 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCe----EEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHH
Confidence 46799999999999999999999986532 2565666677654322211 1 1222221 1 1222
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 004941 384 RNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 453 (722)
Q Consensus 384 ~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~ 453 (722)
..+.+...+..+...+..+|..+|+|+++..+..++.... .+ +.++.+.+++++.+++|+..|..
T Consensus 78 q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~---~~--v~~i~l~v~d~e~lr~Rl~~R~~ 142 (197)
T PRK12339 78 QARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRT---NN--IRAFYLYIRDAELHRSRLADRIN 142 (197)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHh---cC--eEEEEEEeCCHHHHHHHHHHHhh
Confidence 2233334455555555568999999999999988754332 23 34555667789999999988864
No 83
>PRK13946 shikimate kinase; Provisional
Probab=99.03 E-value=2.3e-09 Score=107.08 Aligned_cols=138 Identities=17% Similarity=0.230 Sum_probs=84.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-EVAALAMEDMIS 397 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~-~va~~~l~d~~~ 397 (722)
.+..|+|+|+|||||||+|+.|++.|++. ++|.|...+...+.... .++...++..++.++ ++...
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~-----~id~D~~~~~~~g~~~~-e~~~~~ge~~~~~~e~~~l~~------- 75 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLP-----FLDADTEIERAARMTIA-EIFAAYGEPEFRDLERRVIAR------- 75 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCC-----eECcCHHHHHHhCCCHH-HHHHHHCHHHHHHHHHHHHHH-------
Confidence 45689999999999999999999999887 66666665555443222 334444555554433 22322
Q ss_pred HHhcCCeEEEEeC--CCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCCh-HHHHHHHHHH
Q 004941 398 WMHEGGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNR 474 (722)
Q Consensus 398 ~l~~~G~vVIvDA--tn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~-e~a~~df~~R 474 (722)
+.+.+..||... ++..++.|+.++. .+ -++||+ .+.+++.+|+..+. .+|..++. ++ +...+.+.+|
T Consensus 76 -l~~~~~~Vi~~ggg~~~~~~~r~~l~~---~~-~~v~L~---a~~e~~~~Rl~~r~-~rp~~~~~-~~~~~i~~~~~~R 145 (184)
T PRK13946 76 -LLKGGPLVLATGGGAFMNEETRAAIAE---KG-ISVWLK---ADLDVLWERVSRRD-TRPLLRTA-DPKETLARLMEER 145 (184)
T ss_pred -HHhcCCeEEECCCCCcCCHHHHHHHHc---CC-EEEEEE---CCHHHHHHHhcCCC-CCCcCCCC-ChHHHHHHHHHHH
Confidence 333566666653 4556666666653 33 356665 36788889988663 35655543 33 3344456666
Q ss_pred HHhhh
Q 004941 475 LANYE 479 (722)
Q Consensus 475 i~~y~ 479 (722)
.+.|.
T Consensus 146 ~~~y~ 150 (184)
T PRK13946 146 YPVYA 150 (184)
T ss_pred HHHHH
Confidence 66654
No 84
>PRK13949 shikimate kinase; Provisional
Probab=99.03 E-value=1.9e-09 Score=106.50 Aligned_cols=138 Identities=18% Similarity=0.184 Sum_probs=83.4
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHhc
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEV-AALAMEDMISWMHE 401 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~v-a~~~l~d~~~~l~~ 401 (722)
|+++|.|||||||+|+.|++.|++. ++|.|.+-....+.. -..+|.+..++.++.++.- ++. + ..
T Consensus 4 I~liG~~GsGKstl~~~La~~l~~~-----~id~D~~i~~~~~~~-~~~~~~~~g~~~fr~~e~~~l~~-l-------~~ 69 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGLS-----FIDLDFFIENRFHKT-VGDIFAERGEAVFRELERNMLHE-V-------AE 69 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC-----eecccHHHHHHHCcc-HHHHHHHhCHHHHHHHHHHHHHH-H-------Hh
Confidence 8999999999999999999999877 566665533222221 1344555566666666533 332 2 22
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHH----HHHHHHHHHHh
Q 004941 402 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEA----GLQDFKNRLAN 477 (722)
Q Consensus 402 ~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~----a~~df~~Ri~~ 477 (722)
....||.++ +......+....+.+.+. ++||. .+.+.+.+|++.+...+|...+. ..++ +.+.|.+|.+.
T Consensus 70 ~~~~vis~G-gg~~~~~~~~~~l~~~~~-vi~L~---~~~~~~~~Ri~~~~~~RP~~~~~-~~~~~~~~i~~l~~~R~~~ 143 (169)
T PRK13949 70 FEDVVISTG-GGAPCFFDNMELMNASGT-TVYLK---VSPEVLFVRLRLAKQQRPLLKGK-SDEELLDFIIEALEKRAPF 143 (169)
T ss_pred CCCEEEEcC-CcccCCHHHHHHHHhCCe-EEEEE---CCHHHHHHHHhcCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHH
Confidence 344444333 333322222333344453 67888 57888999998655567887655 4343 33466777777
Q ss_pred hhc
Q 004941 478 YEK 480 (722)
Q Consensus 478 y~~ 480 (722)
|++
T Consensus 144 Y~~ 146 (169)
T PRK13949 144 YRQ 146 (169)
T ss_pred HHh
Confidence 765
No 85
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.02 E-value=2.3e-09 Score=124.09 Aligned_cols=144 Identities=14% Similarity=0.159 Sum_probs=100.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNE-VAALAMEDMIS 397 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~-va~~~l~d~~~ 397 (722)
+...|+|+|+|||||||+++.|++.|++. ++|.|++-....|... .++|...+++.|+.++. +++.++.
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~-----fiD~D~~ie~~~g~si-~eif~~~Ge~~FR~~E~~~l~~~~~---- 74 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLP-----FADADVEIEREIGMSI-PSYFEEYGEPAFREVEADVVADMLE---- 74 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCC-----EEEchHHHHHHHCcCH-HHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 44579999999999999999999999998 8888887554444322 46788888999988874 3444332
Q ss_pred HHhcCCeEEEEeCCC---CCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004941 398 WMHEGGQVGIFDATN---SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 474 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn---~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~R 474 (722)
....|| .... ..++.|+.+.+..+.+..++||. .+.+.+.+|+... ..+|.+.+. ..+.+.+.|.+|
T Consensus 75 ----~~~~VI-s~GGG~v~~~~n~~~L~~~~~~~g~vv~L~---~~~~~l~~Rl~~~-~~RPll~~~-~~~~~~~l~~~R 144 (542)
T PRK14021 75 ----DFDGIF-SLGGGAPMTPSTQHALASYIAHGGRVVYLD---ADPKEAMERANRG-GGRPMLNGD-ANKRWKKLFKQR 144 (542)
T ss_pred ----cCCeEE-ECCCchhCCHHHHHHHHHHHhcCCEEEEEE---CCHHHHHHHHhCC-CCCCCCCCC-cHHHHHHHHHHH
Confidence 223333 2222 23455666665533344688888 5788899998754 457888654 457788889999
Q ss_pred HHhhhccc
Q 004941 475 LANYEKVY 482 (722)
Q Consensus 475 i~~y~~~y 482 (722)
.+.|++..
T Consensus 145 ~~~Y~~~A 152 (542)
T PRK14021 145 DPVFRQVA 152 (542)
T ss_pred HHHHHhhC
Confidence 99998743
No 86
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.98 E-value=1.7e-08 Score=112.95 Aligned_cols=130 Identities=12% Similarity=0.180 Sum_probs=94.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCC--------CC--------------CCC
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA--------DF--------------FRA 375 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~--------~~--------------~~~ 375 (722)
.+|.+|+++|.||+||||+|.+|+.++++. .+++.|.+|+...+.-... .| ...
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~----~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~ 328 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGIT----RIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEP 328 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCc----EEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCccccccccc
Confidence 369999999999999999999999998763 2677788888665432110 00 001
Q ss_pred CC---HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 004941 376 DN---PEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 452 (722)
Q Consensus 376 ~~---~~~~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~ 452 (722)
.. -++|+...+++...++.++......|.++|+|+.+..+..+. .....+..++.++|+|+|++.+++|+..|.
T Consensus 329 ~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~---~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra 405 (475)
T PRK12337 329 TRAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLR---HPYQAGALVVPMLVTLPDEALHRRRFELRD 405 (475)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHH---HHHhcCCceEEEEEEECCHHHHHHHHHHHh
Confidence 11 123444444555557777777777899999999999998765 233456678889999999999999999886
Q ss_pred hc
Q 004941 453 QQ 454 (722)
Q Consensus 453 ~~ 454 (722)
..
T Consensus 406 ~~ 407 (475)
T PRK12337 406 RE 407 (475)
T ss_pred hh
Confidence 53
No 87
>PRK14532 adenylate kinase; Provisional
Probab=98.98 E-value=3.2e-09 Score=105.91 Aligned_cols=147 Identities=19% Similarity=0.267 Sum_probs=82.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-----ADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~-----~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
-|+|+|.|||||||+|+.|++++++. +++.|+.-|.....+.. ..++... +.. -.++...++.+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~-----~is~~d~lr~~~~~~~~~~~~~~~~~~~g-~~~---~~~~~~~~~~~~~ 72 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMV-----QLSTGDMLRAAIASGSELGQRVKGIMDRG-ELV---SDEIVIALIEERL 72 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe-----EEeCcHHHHHHHHcCCHHHHHHHHHHHCC-Ccc---CHHHHHHHHHHHH
Confidence 48899999999999999999998766 66775554432211110 0001000 000 0011222222111
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004941 397 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 474 (722)
Q Consensus 397 ~~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~v-iflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~R 474 (722)
.- ...|..+|+|+...+..+++.+.++ ...+..+ ..|.+.|+ ++++.+|+..|.... + .++.-.+.|.+|
T Consensus 73 ~~-~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~-~~~~~~Rl~~R~~~~-~-----r~dd~~~~~~~R 144 (188)
T PRK14532 73 PE-AEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVD-DEALIERIVKRFEEQ-G-----RPDDNPEVFVTR 144 (188)
T ss_pred hC-cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCcCcC-C-----CCCCCHHHHHHH
Confidence 11 1246789999999999999988776 4445433 34555565 677788887663211 1 112233456777
Q ss_pred HHhhhcccccC
Q 004941 475 LANYEKVYEPV 485 (722)
Q Consensus 475 i~~y~~~yEpl 485 (722)
+..|.+...|+
T Consensus 145 l~~~~~~~~~i 155 (188)
T PRK14532 145 LDAYNAQTAPL 155 (188)
T ss_pred HHHHHHHHHHH
Confidence 77775554443
No 88
>PLN02199 shikimate kinase
Probab=98.98 E-value=3.9e-09 Score=112.07 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=92.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh-hcCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK-HGVNQSADFFRADNPEGMEARNE-VAALAMEDMIS 397 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~-~g~~~~~~~~~~~~~~~~~~~~~-va~~~l~d~~~ 397 (722)
...|+|+|+|||||||+++.|++.|++. ++|.|.+-+.. .|. .-..+|...++..|+.++. +.+.+..
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~-----fIDtD~lIe~~~~G~-sI~eIf~~~GE~~FR~~E~e~L~~L~~---- 171 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYT-----FFDCDTLIEQAMNGT-SVAEIFVHHGENFFRGKETDALKKLSS---- 171 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEehHHHHHHHhcCC-CHHHHHHHhCHHHHHHHHHHHHHHHHh----
Confidence 3479999999999999999999999888 78887765543 221 1245777788888887773 3333322
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh-hhcCCCCCCCCCh-------HHHHH
Q 004941 398 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK-IQQSPDYAEEPDF-------EAGLQ 469 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r-~~~~pd~~~~~d~-------e~a~~ 469 (722)
.... |+ +|....-.+...+.+.+.| .++||. .+.+.+.+||... ...+|...+. +. +.+.+
T Consensus 172 ----~~~~-VI-StGGG~V~~~~n~~~L~~G-~vV~Ld---as~E~l~~RL~~~~~~~RPLL~~~-~~d~~~~~~~~L~~ 240 (303)
T PLN02199 172 ----RYQV-VV-STGGGAVIRPINWKYMHKG-ISIWLD---VPLEALAHRIAAVGTDSRPLLHDE-SGDAYSVAFKRLSA 240 (303)
T ss_pred ----cCCE-EE-ECCCcccCCHHHHHHHhCC-eEEEEE---CCHHHHHHHHhhcCCCCCCcCCCC-CcchhhhHHHHHHH
Confidence 2333 44 4444333344444443345 478888 4688899999852 2457877643 33 45667
Q ss_pred HHHHHHHhhhc
Q 004941 470 DFKNRLANYEK 480 (722)
Q Consensus 470 df~~Ri~~y~~ 480 (722)
.|.+|.+.|++
T Consensus 241 L~~~R~plY~~ 251 (303)
T PLN02199 241 IWDERGEAYTN 251 (303)
T ss_pred HHHHHHHHHHh
Confidence 88888888875
No 89
>PRK13947 shikimate kinase; Provisional
Probab=98.96 E-value=5.5e-09 Score=102.33 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=80.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 401 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~~ 401 (722)
-|+++|+|||||||+|+.|++.|++. ++|.|.+.+...|... ..+|...++..++..+..+... +.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~-----~id~d~~~~~~~g~~~-~~~~~~~ge~~~~~~e~~~~~~-------l~~ 69 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG-----FIDTDKEIEKMTGMTV-AEIFEKDGEVRFRSEEKLLVKK-------LAR 69 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC-----EEECchhhhhhcCCcH-HHHHHHhChHHHHHHHHHHHHH-------Hhh
Confidence 38999999999999999999999888 6777777665543322 2345555666666554322221 222
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhhh
Q 004941 402 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 479 (722)
Q Consensus 402 ~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~~y~ 479 (722)
.+..|| .......-..+.+..+.+.+ .++||. .+++.+.+|+..+. .+|........+...+.|.+|.+.|+
T Consensus 70 ~~~~vi-~~g~g~vl~~~~~~~l~~~~-~vv~L~---~~~~~l~~Rl~~r~-~rp~~~~~~~~~~i~~~~~~r~~~y~ 141 (171)
T PRK13947 70 LKNLVI-ATGGGVVLNPENVVQLRKNG-VVICLK---ARPEVILRRVGKKK-SRPLLMVGDPEERIKELLKEREPFYD 141 (171)
T ss_pred cCCeEE-ECCCCCcCCHHHHHHHHhCC-EEEEEE---CCHHHHHHHhcCCC-CCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 344444 22221111112233334444 366666 46888889998653 35665433123445556666766654
No 90
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.95 E-value=7.7e-09 Score=102.41 Aligned_cols=139 Identities=19% Similarity=0.270 Sum_probs=86.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 399 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l 399 (722)
+..|+++|+||+||||+|+.|++.+++. ++|.|..++...+.. -..+|...++..|+.++. .++++ +
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~-----~vd~D~~i~~~~g~~-i~~~~~~~g~~~fr~~e~---~~l~~----l 70 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNME-----FYDSDQEIEKRTGAD-IGWVFDVEGEEGFRDREE---KVINE----L 70 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCc-----EEECCchHHHHhCcC-HhHHHHHhCHHHHHHHHH---HHHHH----H
Confidence 4469999999999999999999998766 677777666555432 123455566777776542 22222 2
Q ss_pred hcCCeEEEEeCCCC---CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChH-HHHHHHHHHH
Q 004941 400 HEGGQVGIFDATNS---SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFE-AGLQDFKNRL 475 (722)
Q Consensus 400 ~~~G~vVIvDAtn~---~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e-~a~~df~~Ri 475 (722)
...+..| +..... .++.|+.+ .+.+ .++||+ .+.+.+.+|+..+ ..+|...+. .++ .+...+.+|.
T Consensus 71 ~~~~~~v-i~~ggg~v~~~~~~~~l---~~~~-~vv~L~---~~~e~~~~Ri~~~-~~rP~~~~~-~~~~~~~~l~~~R~ 140 (172)
T PRK05057 71 TEKQGIV-LATGGGSVKSRETRNRL---SARG-VVVYLE---TTIEKQLARTQRD-KKRPLLQVD-DPREVLEALANERN 140 (172)
T ss_pred HhCCCEE-EEcCCchhCCHHHHHHH---HhCC-EEEEEe---CCHHHHHHHHhCC-CCCCCCCCC-CHHHHHHHHHHHHH
Confidence 2234443 333222 22333322 3444 588888 4678888888755 357888755 443 4456667787
Q ss_pred Hhhhcc
Q 004941 476 ANYEKV 481 (722)
Q Consensus 476 ~~y~~~ 481 (722)
+.|++.
T Consensus 141 ~~Y~~~ 146 (172)
T PRK05057 141 PLYEEI 146 (172)
T ss_pred HHHHhh
Confidence 777553
No 91
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=98.94 E-value=5.3e-09 Score=105.50 Aligned_cols=139 Identities=17% Similarity=0.203 Sum_probs=86.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCc-eEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHD-TKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 400 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~-t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~ 400 (722)
|||+||+|.|||||.|+.|.+.|...+.+ +..+..| ...|......|-+..+++..+ ..|...++.-.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d----eslg~~~ns~y~~s~~EK~lR-------g~L~S~v~R~L 71 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDD----ESLGIEKNSNYGDSQAEKALR-------GKLRSAVDRSL 71 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEech----hhcCCCCcccccccHHHHHHH-------HHHHHHHHhhc
Confidence 79999999999999999999999887754 3333222 235666656665555553322 22222222223
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHcC-CceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 004941 401 EGGQVGIFDATNSSRKRRNMLMKMAEG-NCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 476 (722)
Q Consensus 401 ~~G~vVIvDAtn~~~~~R~~~~~l~~~-~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~ 476 (722)
..|.+||+|+.|..+..|.++.++++. +...-.|.+-|+.+.+.+.| .. +..|+-.+. .++.+++..+|++
T Consensus 72 sk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~N-s~--~~~p~e~gy--~~e~le~L~~RyE 143 (281)
T KOG3062|consen 72 SKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWN-SE--REDPGEDGY--DDELLEALVQRYE 143 (281)
T ss_pred ccCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhc-cc--CCCCCCCCC--CHHHHHHHHHHhh
Confidence 369999999999999999999988443 33222333334333343444 22 234555444 3556677777765
No 92
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=98.91 E-value=2.6e-09 Score=113.37 Aligned_cols=111 Identities=27% Similarity=0.345 Sum_probs=96.4
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
+-+...||++||+|+||||++-+|.++|...|+.++-+|.|.+ ++|+++..+|..+++++..+++.++|+...+
T Consensus 47 gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdni---rhgl~knlgfs~edreenirriaevaklfad--- 120 (627)
T KOG4238|consen 47 GFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNI---RHGLNKNLGFSPEDREENIRRIAEVAKLFAD--- 120 (627)
T ss_pred CccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchh---hhhhhhccCCCchhHHHHHHHHHHHHHHHhc---
Confidence 5678899999999999999999999999999999999999877 5688889999999999999999999998554
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeC
Q 004941 397 SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICN 439 (722)
Q Consensus 397 ~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~ 439 (722)
.|.+.|.....+..+.|..++++.+ +..+-|+|+.++
T Consensus 121 -----aglvcitsfispf~~dr~~arkihe-~~~l~f~ev~v~ 157 (627)
T KOG4238|consen 121 -----AGLVCITSFISPFAKDRENARKIHE-SAGLPFFEVFVD 157 (627)
T ss_pred -----CCceeeehhcChhhhhhhhhhhhhc-ccCCceEEEEec
Confidence 9999998888899999999999943 223447777655
No 93
>PRK14527 adenylate kinase; Provisional
Probab=98.91 E-value=6.1e-09 Score=104.45 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=88.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHH-------HHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALA 391 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~-------~~va~~~ 391 (722)
.+.+|+++|.|||||||+|+.|+++++...+ +.|+.-+.....+.. ........+ .++...+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i-----s~gd~~r~~~~~~~~------~~~~~~~~~~~g~~~p~~~~~~l 73 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKL-----STGDILRDHVARGTE------LGQRAKPIMEAGDLVPDELILAL 73 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCC-----CccHHHHHHHhcCcH------HHHHHHHHHHcCCCCcHHHHHHH
Confidence 5679999999999999999999999887744 444433322111100 000000000 0111111
Q ss_pred HHHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEE-EEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 004941 392 MEDMISWMHE-GGQVGIFDATNSSRKRRNMLMKM-AEGNCKII-FLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGL 468 (722)
Q Consensus 392 l~d~~~~l~~-~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~vi-flE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~ 468 (722)
+. +.+.. .+..+|+|+...+..+++.+..+ ...+..+. ++.+.|+ ++++.+|+..|... ..- .++-.
T Consensus 74 ~~---~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~-~~~~~~Rl~~R~~~-~~r-----~dd~~ 143 (191)
T PRK14527 74 IR---DELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVP-DEELIRRIVERARQ-EGR-----SDDNE 143 (191)
T ss_pred HH---HHHhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcCccc-CCC-----CCCCH
Confidence 11 12222 24569999877778888878776 44444442 3445564 67788888776431 111 12234
Q ss_pred HHHHHHHHhhhcccccCCC----CCeEEEeec
Q 004941 469 QDFKNRLANYEKVYEPVDE----GSYIKMIDM 496 (722)
Q Consensus 469 ~df~~Ri~~y~~~yEpl~e----~~yik~i~~ 496 (722)
+-+.+|++.|.+..+|+-. ..-+..||.
T Consensus 144 ~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~ 175 (191)
T PRK14527 144 ETVRRRQQVYREQTQPLVDYYEARGHLKRVDG 175 (191)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhcCCEEEEEC
Confidence 5677888888887777642 233455665
No 94
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.91 E-value=9.2e-09 Score=100.27 Aligned_cols=140 Identities=19% Similarity=0.284 Sum_probs=75.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-EVAALAMEDMIS 397 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~-~va~~~l~d~~~ 397 (722)
.+.+|+|+|+|||||||+|+.|+++|++. +++.|++.+...+.... +++.+.+...++..+ ++...++
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~-----~~d~d~~~~~~~g~~~~-~~~~~~g~~~~~~~~~~~~~~l~----- 71 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYD-----FIDTDHLIEARAGKSIP-EIFEEEGEAAFRELEEEVLAELL----- 71 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHcCCCHH-HHHHHHCHHHHHHHHHHHHHHHH-----
Confidence 45699999999999999999999998765 77888876655443322 223333333333332 2222221
Q ss_pred HHhcCCeEEEEeCCC-C-CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCCh-HHHHHHHHHH
Q 004941 398 WMHEGGQVGIFDATN-S-SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNR 474 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn-~-~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~-e~a~~df~~R 474 (722)
...+ .||....+ . ....|+.+ .+ +..++||. | +.+.+.+|+..+.. ++..... +. +...+.|.+|
T Consensus 72 --~~~~-~vi~~g~~~~~~~~~r~~l---~~-~~~~v~l~--~-~~~~~~~R~~~~~~-r~~~~~~-~~~~~~~~~~~~~ 139 (175)
T PRK00131 72 --ARHN-LVISTGGGAVLREENRALL---RE-RGTVVYLD--A-SFEELLRRLRRDRN-RPLLQTN-DPKEKLRDLYEER 139 (175)
T ss_pred --hcCC-CEEEeCCCEeecHHHHHHH---Hh-CCEEEEEE--C-CHHHHHHHhcCCCC-CCcCCCC-ChHHHHHHHHHHH
Confidence 1223 33332221 1 22333333 23 44556665 4 57778888876543 3444322 22 3334455556
Q ss_pred HHhhhcc
Q 004941 475 LANYEKV 481 (722)
Q Consensus 475 i~~y~~~ 481 (722)
...|...
T Consensus 140 ~~~~~~~ 146 (175)
T PRK00131 140 DPLYEEV 146 (175)
T ss_pred HHHHHhh
Confidence 5656544
No 95
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.88 E-value=1.7e-08 Score=102.02 Aligned_cols=131 Identities=18% Similarity=0.295 Sum_probs=79.4
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
...|.+|+|.|-|||||||++..+...+. +.+..++|.|++|+...... .................+....+.++
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYD---ELLKADPDEASELTQKEASRLAEKLI 86 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHH---HHHHHHCCCTHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchh---hhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999988765 56777899999977431000 00000011122333444555555566
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHH-HHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 004941 397 SWMHEGGQVGIFDATNSSRKRRN-MLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 453 (722)
Q Consensus 397 ~~l~~~G~vVIvDAtn~~~~~R~-~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~ 453 (722)
+.+.+.|..+|+|.|+...+.-. .+..+.+.|+++..+-+.|+ +++-..|+..|..
T Consensus 87 ~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~-~e~s~~rv~~R~~ 143 (199)
T PF06414_consen 87 EYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVP-PELSIERVRQRYE 143 (199)
T ss_dssp HHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE----HHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECC-HHHHHHHHHHHHH
Confidence 67777999999999999877644 66666888998877776664 6777777777754
No 96
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.88 E-value=9.6e-09 Score=101.75 Aligned_cols=152 Identities=18% Similarity=0.279 Sum_probs=87.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhcCCCCCCCCCCCCHHHHHHH-------HHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAME 393 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy-Rr~~~g~~~~~~~~~~~~~~~~~~~-------~~va~~~l~ 393 (722)
+|+++|.|||||||+|+.|+++++.. +++.|+. |+... .... ........+ .+++..++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~-----~is~~d~lr~~~~-~~~~------~~~~~~~~~~~g~~~~~~~~~~ll~ 68 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFT-----HLSAGDLLRAEIK-SGSE------NGELIESMIKNGKIVPSEVTVKLLK 68 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCe-----EEECChHHHHHHh-cCCh------HHHHHHHHHHCCCcCCHHHHHHHHH
Confidence 58999999999999999999998765 6666444 44322 1000 000000000 011112222
Q ss_pred HHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHHHcC--CceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 004941 394 DMISWMHE-GGQVGIFDATNSSRKRRNMLMKMAEG--NCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 470 (722)
Q Consensus 394 d~~~~l~~-~G~vVIvDAtn~~~~~R~~~~~l~~~--~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~d 470 (722)
+.+.. .+..+|+|+...+.+.+..+.++... ... +++.+.|+ ++++.+|+..|... .+. .++..+.
T Consensus 69 ---~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d-~~i~l~~~-~~~~~~Rl~~R~~~----~~r--~dd~~e~ 137 (183)
T TIGR01359 69 ---NAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFK-FVLFFDCP-EEVMIKRLLKRGQS----SGR--VDDNIES 137 (183)
T ss_pred ---HHHhccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCC-EEEEEECC-HHHHHHHHhcCCcc----CCC--CCCCHHH
Confidence 12222 26789999999999888888877422 222 24444564 67777777766431 111 1233456
Q ss_pred HHHHHHhhhcccccCCC----CCeEEEeec
Q 004941 471 FKNRLANYEKVYEPVDE----GSYIKMIDM 496 (722)
Q Consensus 471 f~~Ri~~y~~~yEpl~e----~~yik~i~~ 496 (722)
+.+|+..|.+...|+-+ ..++..||.
T Consensus 138 ~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~ 167 (183)
T TIGR01359 138 IKKRFRTYNEQTLPVIEHYENKGKVKEINA 167 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 77888888777666442 245566776
No 97
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.85 E-value=2.1e-08 Score=98.47 Aligned_cols=136 Identities=16% Similarity=0.264 Sum_probs=79.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 401 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~~ 401 (722)
.|+++|+|||||||+|+.|++.|++. ++|.|.+.....+..... ++.....+.++.++.-+... +.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~-----~~d~D~~~~~~~g~~~~~-~~~~~g~~~~~~~e~~~~~~-------~~- 69 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYR-----FVDTDQWLQSTSNMTVAE-IVEREGWAGFRARESAALEA-------VT- 69 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC-----EEEccHHHHHHhCCCHHH-HHHHHCHHHHHHHHHHHHHH-------hc-
Confidence 47889999999999999999999887 778887766555443322 44344455555444222221 11
Q ss_pred CCeEEEEeCCCC---CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh--hcCCCCCCCCCh-HHHHHHHHHHH
Q 004941 402 GGQVGIFDATNS---SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI--QQSPDYAEEPDF-EAGLQDFKNRL 475 (722)
Q Consensus 402 ~G~vVIvDAtn~---~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~--~~~pd~~~~~d~-e~a~~df~~Ri 475 (722)
.+..| +..... ....|+.+ .+.+ .++||+ .+++++.+|+..+. ..+|...+. +. +...+.|.+|.
T Consensus 70 ~~~~v-i~~ggg~vl~~~~~~~l---~~~~-~~v~l~---~~~~~~~~Rl~~r~~~~~rp~~~~~-~~~~~~~~~~~~r~ 140 (171)
T PRK03731 70 APSTV-IATGGGIILTEENRHFM---RNNG-IVIYLC---APVSVLANRLEANPEEDQRPTLTGK-PISEEVAEVLAERE 140 (171)
T ss_pred CCCeE-EECCCCccCCHHHHHHH---HhCC-EEEEEE---CCHHHHHHHHccccccccCCcCCCC-ChHHHHHHHHHHHH
Confidence 33343 333322 23333333 3344 366776 46888889987653 224545443 33 34455566677
Q ss_pred Hhhhc
Q 004941 476 ANYEK 480 (722)
Q Consensus 476 ~~y~~ 480 (722)
+.|.+
T Consensus 141 ~~y~~ 145 (171)
T PRK03731 141 ALYRE 145 (171)
T ss_pred HHHHH
Confidence 77764
No 98
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.80 E-value=1.1e-07 Score=94.66 Aligned_cols=141 Identities=14% Similarity=0.162 Sum_probs=83.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh------hHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK------YRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 394 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd------yRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d 394 (722)
-+++++|.+||||||+++.|+..+... .++.|+ .|+...+.. +...........+..++...+
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~-----~i~gd~~~~~~~~r~~~~g~~----~~~~~~~~~~~~~~~~~~~~~-- 72 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK-----FIDGDDLHPAKNIDKMSQGIP----LTDEDRLPWLERLNDASYSLY-- 72 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE-----EECCcccCCHhHHHHHhcCCC----CCcccchHHHHHHHHHHHHHH--
Confidence 378999999999999999999987754 455554 333332222 211111112222223332211
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004941 395 MISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 474 (722)
Q Consensus 395 ~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~R 474 (722)
......+|+ +++..+..|+.+++. +..+.||.+.|+ .+++.+|+.+|.. ++ + +++.+
T Consensus 73 -----~~~~~g~iv-~s~~~~~~R~~~r~~---~~~~~~v~l~a~-~~~l~~Rl~~R~~---~~--~-~~~vl------- 129 (176)
T PRK09825 73 -----KKNETGFIV-CSSLKKQYRDILRKS---SPNVHFLWLDGD-YETILARMQRRAG---HF--M-PPDLL------- 129 (176)
T ss_pred -----hcCCCEEEE-EEecCHHHHHHHHhh---CCCEEEEEEeCC-HHHHHHHHhcccC---CC--C-CHHHH-------
Confidence 112333355 889988888877543 455677777774 7889999988753 22 3 55555
Q ss_pred HHhhhcccccCCCC-CeEEEeec
Q 004941 475 LANYEKVYEPVDEG-SYIKMIDM 496 (722)
Q Consensus 475 i~~y~~~yEpl~e~-~yik~i~~ 496 (722)
..|.+.|||.+.+ .-+..+|.
T Consensus 130 -~~Q~~~~e~~~~~e~~~~~~d~ 151 (176)
T PRK09825 130 -QSQFDALERPCADEHDIARIDV 151 (176)
T ss_pred -HHHHHHcCCCCCCcCCeEEEEC
Confidence 5666667776543 22445565
No 99
>PRK14531 adenylate kinase; Provisional
Probab=98.80 E-value=6.4e-09 Score=103.75 Aligned_cols=139 Identities=18% Similarity=0.202 Sum_probs=80.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhcCCCCCCCCCCCCHHHHHHH-------HHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAME 393 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy-Rr~~~g~~~~~~~~~~~~~~~~~~~-------~~va~~~l~ 393 (722)
-|+++|.|||||||+|+.|+++++.. .++.|+. |+...... . ........+ .+++..++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~-----~is~gd~lr~~~~~~~-~------~~~~~~~~~~~G~~v~d~l~~~~~~ 71 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLR-----HLSTGDLLRSEVAAGS-A------LGQEAEAVMNRGELVSDALVLAIVE 71 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC-----eEecccHHHHHHhcCC-H------HHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 58999999999999999999998766 4555333 44321110 0 000000000 011111111
Q ss_pred HHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 004941 394 DMISWMHE-GGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 470 (722)
Q Consensus 394 d~~~~l~~-~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~v-iflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~d 470 (722)
+.|.. .+..+|+|+...+..+++.+.++ .+.+..+ .++.+.| +++++.+|+..|.. + + |.+ +.
T Consensus 72 ---~~l~~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~-~~~~l~~Rl~~R~r--~---d--D~~---e~ 137 (183)
T PRK14531 72 ---SQLKALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLEL-DDAVLIERLLARGR--A---D--DNE---AV 137 (183)
T ss_pred ---HHHhhccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEEC-CHHHHHHHhhcCCC--C---C--CCH---HH
Confidence 12222 34567889999999888888776 3334332 2444556 47888888887632 1 1 222 34
Q ss_pred HHHHHHhhhcccccCC
Q 004941 471 FKNRLANYEKVYEPVD 486 (722)
Q Consensus 471 f~~Ri~~y~~~yEpl~ 486 (722)
+.+|++.|++..+|+-
T Consensus 138 i~~Rl~~y~~~~~pv~ 153 (183)
T PRK14531 138 IRNRLEVYREKTAPLI 153 (183)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788888877777754
No 100
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.75 E-value=4.9e-08 Score=96.91 Aligned_cols=118 Identities=21% Similarity=0.261 Sum_probs=69.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhh-cCC-CCCCC-CCCC---CHHH----HHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH-GVN-QSADF-FRAD---NPEG----MEARNEVAAL 390 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~-g~~-~~~~~-~~~~---~~~~----~~~~~~va~~ 390 (722)
.+|+|.|-|.|||||||+.|+..+.. .-..+..|.+++... +.. ...++ +... .... +..+...++.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~---p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa 78 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPE---PWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAA 78 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS----EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcC---CeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHH
Confidence 38999999999999999999998752 223688888877422 111 11222 1111 1122 2222333333
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHH-HHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 004941 391 AMEDMISWMHEGGQVGIFDATNSSRKR-RNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 451 (722)
Q Consensus 391 ~l~d~~~~l~~~G~vVIvDAtn~~~~~-R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r 451 (722)
+.+.|..||+|.......+ .+.++++.. +++|+||.+.|+. +++++|=+.|
T Consensus 79 --------~a~aG~~VIvD~v~~~~~~l~d~l~~~L~-~~~vl~VgV~Cpl-eil~~RE~~R 130 (174)
T PF07931_consen 79 --------MARAGNNVIVDDVFLGPRWLQDCLRRLLA-GLPVLFVGVRCPL-EILERRERAR 130 (174)
T ss_dssp --------HHHTT-EEEEEE--TTTHHHHHHHHHHHT-TS-EEEEEEE--H-HHHHHHHHHH
T ss_pred --------HHhCCCCEEEecCccCcHHHHHHHHHHhC-CCceEEEEEECCH-HHHHHHHHhc
Confidence 4458999999999888775 777766654 7899999999974 4666665444
No 101
>PRK01184 hypothetical protein; Provisional
Probab=98.75 E-value=1.6e-07 Score=93.39 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=74.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh-hHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM-ISW 398 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd-yRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~-~~~ 398 (722)
++|+|+|+|||||||+|+ +++.++.. +++.|| +|+.....+.. .......+...+.+.++...+..++ ...
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~-----~i~~~d~lr~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIP-----VVVMGDVIREEVKKRGLE-PTDENIGKVAIDLRKELGMDAVAKRTVPK 74 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCc-----EEEhhHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 489999999999999997 66665544 677644 56654321111 1111112222222222221222111 222
Q ss_pred Hh-cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHh
Q 004941 399 MH-EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLAN 477 (722)
Q Consensus 399 l~-~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~~ 477 (722)
+. ..+..||+|+. .....++.+++..... +..|.+.|+ .+...+|+..|.. ++ +.. -.+++.+|+..
T Consensus 75 i~~~~~~~vvidg~-r~~~e~~~~~~~~~~~--~~~i~v~~~-~~~~~~Rl~~R~~--~~-----d~~-~~~~~~~r~~~ 142 (184)
T PRK01184 75 IREKGDEVVVIDGV-RGDAEVEYFRKEFPED--FILIAIHAP-PEVRFERLKKRGR--SD-----DPK-SWEELEERDER 142 (184)
T ss_pred HHhcCCCcEEEeCC-CCHHHHHHHHHhCCcc--cEEEEEECC-HHHHHHHHHHcCC--CC-----Chh-hHHHHHHHHHH
Confidence 33 34789999998 5666677776654322 334555565 6667777766532 21 111 14566677665
Q ss_pred h
Q 004941 478 Y 478 (722)
Q Consensus 478 y 478 (722)
+
T Consensus 143 q 143 (184)
T PRK01184 143 E 143 (184)
T ss_pred H
Confidence 4
No 102
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.73 E-value=7.2e-08 Score=104.23 Aligned_cols=146 Identities=15% Similarity=0.177 Sum_probs=84.3
Q ss_pred CCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHH-HHHHHHHHH
Q 004941 316 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-EVAALAMED 394 (722)
Q Consensus 316 ~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~-~va~~~l~d 394 (722)
+...+..|+++|+|||||||+|+.|++.|++. +++.|.++....|.... .++....+..|+..+ ++...+
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~-----~id~D~~i~~~~G~~i~-ei~~~~G~~~fr~~e~~~l~~l--- 199 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVP-----FVELNREIEREAGLSVS-EIFALYGQEGYRRLERRALERL--- 199 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCC-----EEeHHHHHHHHhCCCHH-HHHHHHCHHHHHHHHHHHHHHH---
Confidence 34566789999999999999999999998877 66888776655554322 233334555555443 222221
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004941 395 MISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 474 (722)
Q Consensus 395 ~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~R 474 (722)
+.+.+.+||. ........-..+..+.+ ++.++||. .+.+.+.+|+..+...+|...+....+.+.+.+.+|
T Consensus 200 ----l~~~~~~VI~-~Ggg~v~~~~~~~~l~~-~~~~V~L~---a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R 270 (309)
T PRK08154 200 ----IAEHEEMVLA-TGGGIVSEPATFDLLLS-HCYTVWLK---ASPEEHMARVRAQGDLRPMADNREAMEDLRRILASR 270 (309)
T ss_pred ----HhhCCCEEEE-CCCchhCCHHHHHHHHh-CCEEEEEE---CCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHH
Confidence 2223444444 33322222122222333 34456665 467888888877654445333221346666777777
Q ss_pred HHhhh
Q 004941 475 LANYE 479 (722)
Q Consensus 475 i~~y~ 479 (722)
.+.|+
T Consensus 271 ~~~y~ 275 (309)
T PRK08154 271 EPLYA 275 (309)
T ss_pred HHHHH
Confidence 77775
No 103
>PLN02200 adenylate kinase family protein
Probab=98.70 E-value=1.2e-07 Score=98.62 Aligned_cols=155 Identities=15% Similarity=0.225 Sum_probs=86.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHH-------HHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAAL 390 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~-------~~va~~ 390 (722)
..|++|+++|.|||||||+|+.|+++++.. .++.|+.-|........ ........+ .++...
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~-----his~gdllR~~i~~~s~------~~~~i~~~~~~G~~vp~e~~~~ 109 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK-----HLSAGDLLRREIASNSE------HGAMILNTIKEGKIVPSEVTVK 109 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCe-----EEEccHHHHHHHhccCh------hHHHHHHHHHcCCCCcHHHHHH
Confidence 357899999999999999999999998755 67775553322111100 000000000 011111
Q ss_pred HHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 004941 391 AMEDMISWMH-EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 469 (722)
Q Consensus 391 ~l~d~~~~l~-~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~ 469 (722)
.+. ..+. ..+..+|+|+...+.+++..+.++...... +++.+.|+ ++++.+|+..|...+. ++-.+
T Consensus 110 ~l~---~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd-~vi~Ld~~-~e~~~~Rl~~R~~~r~--------dd~~e 176 (234)
T PLN02200 110 LIQ---KEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPN-VVLFFDCP-EEEMVKRVLNRNQGRV--------DDNID 176 (234)
T ss_pred HHH---HHHhcCCCCeEEecCCcccHHHHHHHHHHhccCCC-EEEEEECC-HHHHHHHHHcCcCCCC--------CCCHH
Confidence 111 1121 124569999988777777777766422221 23344564 5667777776643222 22345
Q ss_pred HHHHHHHhhhcccccCCC----CCeEEEeec
Q 004941 470 DFKNRLANYEKVYEPVDE----GSYIKMIDM 496 (722)
Q Consensus 470 df~~Ri~~y~~~yEpl~e----~~yik~i~~ 496 (722)
.+.+|++.|.+..+|+-+ ..-+..||.
T Consensus 177 ~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa 207 (234)
T PLN02200 177 TIKKRLKVFNALNLPVIDYYSKKGKLYTINA 207 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 667888888888777542 123445565
No 104
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.67 E-value=1.2e-07 Score=108.54 Aligned_cols=134 Identities=17% Similarity=0.253 Sum_probs=86.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNE-VAALAMEDMISWMH 400 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~-va~~~l~d~~~~l~ 400 (722)
-|+++|+|||||||+|+.|++.|++. ++|.|++++...|... ..+|.+..++.++.++. +.+.++.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~-----~id~D~~i~~~~g~~i-~~i~~~~Ge~~fr~~E~~~l~~l~~------- 68 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQ-----FIDMDEEIERREGRSV-RRIFEEDGEEYFRLKEKELLRELVE------- 68 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCe-----EEECcHHHHHHcCCCH-HHHHHHhhhHHHHHHHHHHHHHHhh-------
Confidence 48999999999999999999998877 7888888776554332 34566667777765553 3332222
Q ss_pred cCCeEEEEeCCC---CCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHh
Q 004941 401 EGGQVGIFDATN---SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLAN 477 (722)
Q Consensus 401 ~~G~vVIvDAtn---~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~~ 477 (722)
....| +.... ...+.|+.++ + + .++||. .+.+++.+|+..+ .+|...+. .+.+.+.|.+|.+.
T Consensus 69 -~~~~V-is~Gggvv~~~~~r~~l~---~-~-~vI~L~---as~e~l~~Rl~~~--~RPLl~~~--~e~l~~L~~~R~~l 134 (488)
T PRK13951 69 -RDNVV-VATGGGVVIDPENRELLK---K-E-KTLFLY---APPEVLMERVTTE--NRPLLREG--KERIREIWERRKQF 134 (488)
T ss_pred -cCCEE-EECCCccccChHHHHHHh---c-C-eEEEEE---CCHHHHHHHhccC--CCCCcccc--HHHHHHHHHHHHHH
Confidence 22222 22221 1223444443 2 2 366766 3678999999754 46765432 46677888999999
Q ss_pred hhccc
Q 004941 478 YEKVY 482 (722)
Q Consensus 478 y~~~y 482 (722)
|++.+
T Consensus 135 Y~~~~ 139 (488)
T PRK13951 135 YTEFR 139 (488)
T ss_pred Hhccc
Confidence 98653
No 105
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.67 E-value=2.5e-07 Score=91.57 Aligned_cols=139 Identities=17% Similarity=0.236 Sum_probs=71.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh-hcCCCC----------CCCCCCCCHHHHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK-HGVNQS----------ADFFRADNPEGMEARNEVAAL 390 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~-~g~~~~----------~~~~~~~~~~~~~~~~~va~~ 390 (722)
+|+++|.|||||||+|+.|+++++.. .++.|++-+.. .+.... ..+.. ....++.+.+.+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 77 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFT-----HLSTGDLLRAEVASGSERGKQLQAIMESGDLVP--LDTVLDLLKDAMVA 77 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHc
Confidence 78999999999999999999998655 66666643321 110000 00000 01111111111111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 004941 391 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 470 (722)
Q Consensus 391 ~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~d 470 (722)
....|..+|+|+...+..+...+.... ....+++.+.|+ ++++.+|+..|... .+-. +.-.+.
T Consensus 78 --------~~~~~~~~i~dg~~~~~~q~~~~~~~~--~~~~~vi~l~~~-~~~~~~Rl~~R~~~-~~r~-----d~~~~~ 140 (188)
T TIGR01360 78 --------ALGTSKGFLIDGYPREVKQGEEFERRI--GPPTLVLYFDCS-EDTMVKRLLKRAET-SGRV-----DDNEKT 140 (188)
T ss_pred --------ccCcCCeEEEeCCCCCHHHHHHHHHcC--CCCCEEEEEECC-HHHHHHHHHccccc-CCCC-----CCCHHH
Confidence 112578899999766554444333221 112234444454 67788888766421 1111 222345
Q ss_pred HHHHHHhhhccccc
Q 004941 471 FKNRLANYEKVYEP 484 (722)
Q Consensus 471 f~~Ri~~y~~~yEp 484 (722)
+.+|+..|.+.-.|
T Consensus 141 ~~~r~~~~~~~~~~ 154 (188)
T TIGR01360 141 IKKRLETYYKATEP 154 (188)
T ss_pred HHHHHHHHHHhhHH
Confidence 66677666543333
No 106
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=1e-07 Score=91.02 Aligned_cols=141 Identities=16% Similarity=0.223 Sum_probs=90.6
Q ss_pred EccCCCChHHHHHHHHHHHhhcCCceEEEec-hhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 004941 326 VGLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQ 404 (722)
Q Consensus 326 vGLPGSGKSTlAr~La~~L~~~g~~t~v~~~-ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~~~G~ 404 (722)
.|.+||||||++++|+++|++..++-|-|+. .+++|...|.. ..++++.--.+.+...+....+ .|.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiP----L~DdDR~pWL~~l~~~~~~~~~--------~~~ 68 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIP----LNDDDRWPWLEALGDAAASLAQ--------KNK 68 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCC----CCcchhhHHHHHHHHHHHHhhc--------CCC
Confidence 3889999999999999999998666666655 23333333322 2233333323333333333222 567
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhhhccccc
Q 004941 405 VGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEP 484 (722)
Q Consensus 405 vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~~y~~~yEp 484 (722)
.+|+-+...++..|+.+++... ++.++||+ .+.+++.+|+..|+. -|. +..+ ++-|-...|+
T Consensus 69 ~~vi~CSALKr~YRD~LR~~~~-~~~Fv~L~---g~~~~i~~Rm~~R~g---HFM----~~~l-------l~SQfa~LE~ 130 (161)
T COG3265 69 HVVIACSALKRSYRDLLREANP-GLRFVYLD---GDFDLILERMKARKG---HFM----PASL-------LDSQFATLEE 130 (161)
T ss_pred ceEEecHHHHHHHHHHHhccCC-CeEEEEec---CCHHHHHHHHHhccc---CCC----CHHH-------HHHHHHHhcC
Confidence 7888788888999999998654 46777777 689999999988753 232 2222 2334444455
Q ss_pred CCCCCeEEEeec
Q 004941 485 VDEGSYIKMIDM 496 (722)
Q Consensus 485 l~e~~yik~i~~ 496 (722)
.+.+..+..||+
T Consensus 131 P~~de~vi~idi 142 (161)
T COG3265 131 PGADEDVLTIDI 142 (161)
T ss_pred CCCCCCEEEeeC
Confidence 554468888887
No 107
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.64 E-value=3e-08 Score=96.68 Aligned_cols=129 Identities=17% Similarity=0.239 Sum_probs=81.6
Q ss_pred CCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHhcCCeEEE
Q 004941 329 PARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-EVAALAMEDMISWMHEGGQVGI 407 (722)
Q Consensus 329 PGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~-~va~~~l~d~~~~l~~~G~vVI 407 (722)
|||||||+++.||+.|+|. ++|.|++-....|.. -..+|...+++.|+..+ ++++.++. .. ..|
T Consensus 1 ~GsGKStvg~~lA~~L~~~-----fiD~D~~i~~~~g~s-i~~i~~~~G~~~fr~~E~~~l~~l~~--------~~-~~V 65 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRP-----FIDLDDEIEERTGMS-ISEIFAEEGEEAFRELESEALRELLK--------EN-NCV 65 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSE-----EEEHHHHHHHHHTSH-HHHHHHHHHHHHHHHHHHHHHHHHHC--------SS-SEE
T ss_pred CCCcHHHHHHHHHHHhCCC-----ccccCHHHHHHhCCc-HHHHHHcCChHHHHHHHHHHHHHHhc--------cC-cEE
Confidence 8999999999999999998 888888755444421 13456556667777666 33333322 32 333
Q ss_pred EeCCC---CCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCCh-HHHHHHHHHHHHhhhcc
Q 004941 408 FDATN---SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRLANYEKV 481 (722)
Q Consensus 408 vDAtn---~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~-e~a~~df~~Ri~~y~~~ 481 (722)
+.... ...+.|+.++ + ...++||. .+.+.+.+|+..+.. +|.+.+. .. +...+.+.+|.+.|++.
T Consensus 66 Ia~GGG~~~~~~~~~~L~---~-~g~vI~L~---~~~~~l~~Rl~~~~~-Rp~l~~~-~~~~~~~~~~~~R~~~Y~~~ 134 (158)
T PF01202_consen 66 IACGGGIVLKEENRELLK---E-NGLVIYLD---ADPEELAERLRARDN-RPLLKGK-MEHEEILELLFEREPLYEQA 134 (158)
T ss_dssp EEE-TTGGGSHHHHHHHH---H-HSEEEEEE-----HHHHHHHHHHHCT-SGGTCSH-HHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCcCcHHHHHHHH---h-CCEEEEEe---CCHHHHHHHHhCCCC-CCCCCCC-ChHHHHHHHHHHHHHHHHhc
Confidence 33322 2334444444 2 44588887 467889999987755 7888765 32 34566666888888764
No 108
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.63 E-value=6.6e-07 Score=89.13 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=83.6
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHH---HHHH-HHHHHHHHH
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN---EVAA-LAMEDMISW 398 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~---~va~-~~l~d~~~~ 398 (722)
|+++|.|||||||+|+.|++.++.. +++.|+.-+....... +........+. .+-. .+..-+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~-----~i~~~~l~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 70 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLP-----HISTGDLLREEIASGT------ELGKKAKEYIDSGKLVPDEIVIKLLKER 70 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe-----EEECcHHHHHHHhcCC------hHHHHHHHHHHcCCccCHHHHHHHHHHH
Confidence 7999999999999999999987655 6777665332211100 00000000000 0000 001111122
Q ss_pred Hhc--CCeEEEEeCCCCCHHHHHHHHHHHc-CCceEEEEEEEeCCHHHHHHHHHHhhhcCC---CCC-----------CC
Q 004941 399 MHE--GGQVGIFDATNSSRKRRNMLMKMAE-GNCKIIFLETICNDRDIIERNIRLKIQQSP---DYA-----------EE 461 (722)
Q Consensus 399 l~~--~G~vVIvDAtn~~~~~R~~~~~l~~-~~~~viflE~~c~d~~~i~~ri~~r~~~~p---d~~-----------~~ 461 (722)
+.. .+..+|+|+...+...++.+.+... .....++|.+.|+ ++++.+|+..|..... .|. ..
T Consensus 71 l~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~ 149 (194)
T cd01428 71 LKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVP-DEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQ 149 (194)
T ss_pred HhcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCcCCCcCCcCCcCCCcccCCcccc
Confidence 322 2567899998777777777777632 2233344555564 6778888877643210 010 01
Q ss_pred CChHHHHHHHHHHHHhhhcccccCCC
Q 004941 462 PDFEAGLQDFKNRLANYEKVYEPVDE 487 (722)
Q Consensus 462 ~d~e~a~~df~~Ri~~y~~~yEpl~e 487 (722)
..++..+.+.+|+..|....+|+-+
T Consensus 150 -r~dd~~~~i~~R~~~y~~~~~~i~~ 174 (194)
T cd01428 150 -RSDDNEETIKKRLEVYKEQTAPLID 174 (194)
T ss_pred -CCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 1233346788899999888777753
No 109
>PRK12338 hypothetical protein; Provisional
Probab=98.60 E-value=4.7e-07 Score=97.66 Aligned_cols=127 Identities=15% Similarity=0.164 Sum_probs=84.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCC------------------C--C-
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRA------------------D--N- 377 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~------------------~--~- 377 (722)
+|.+|+++|.||+||||+|++|++++++. .++..|-+|+...+..... +.+. . .
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~----~~~~tD~~r~~~~~~~~~~-~~P~l~~ssy~a~~~l~~~~~~~~~~~ 77 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIK----HLIETDFIREVVRGIIGKE-YAPALHKSSYNAYTALRDKENFKNNEE 77 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCe----EEccChHHHHHHcCCCCcc-cCchhhcccHHHHhhcCCcccccchHH
Confidence 57899999999999999999999998764 2446666788776643221 1000 0 0
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 004941 378 --PEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 453 (722)
Q Consensus 378 --~~~~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~ 453 (722)
-++|+...+++...++.++.-....|..+|+++....+......... ....+.|+-.. +|++..++|+..|..
T Consensus 78 ~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~~--~~~~v~~~vl~-~dee~h~~Rf~~R~~ 152 (319)
T PRK12338 78 LICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQFE--ENASIHFFILS-ADEEVHKERFVKRAM 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhhc--ccCceEEEEEE-CCHHHHHHHHHHhhh
Confidence 12344445555556666666555689999999999988776542221 12235555544 789999999988754
No 110
>PRK14530 adenylate kinase; Provisional
Probab=98.58 E-value=6e-07 Score=91.83 Aligned_cols=149 Identities=17% Similarity=0.253 Sum_probs=81.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHH-HHHHH-----HHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPE-GMEAR-----NEVAALAMEDM 395 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~-~~~~~-----~~va~~~l~d~ 395 (722)
.|+++|.|||||||+|+.|+++++.. +++.|++-+...+.... ..+...... .+-.. .++...++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~-----~i~~g~~lr~~~~~~~~-~~~~~~~~~~~~~~~g~~~~d~~~~~~l~-- 76 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVE-----HVTTGDALRANKQMDIS-DMDTEYDTPGEYMDAGELVPDAVVNEIVE-- 76 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe-----EEeccHHHHHhccCCcc-cccchHHHHHHHHHcCCCCCHHHHHHHHH--
Confidence 58889999999999999999998755 66777664433211111 111111110 00000 012222222
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCC----C---------C---
Q 004941 396 ISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPD----Y---------A--- 459 (722)
Q Consensus 396 ~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd----~---------~--- 459 (722)
..+. ....+|+|+...+.+.++.+..+...+ .+++|+ | +.+++.+|+..|... +. | .
T Consensus 77 -~~l~-~~~~~IldG~pr~~~q~~~l~~~~~~d-~vI~Ld--~-~~~~l~~Rl~~R~~~-~~~g~~~~~~~~~p~~~~~~ 149 (215)
T PRK14530 77 -EALS-DADGFVLDGYPRNLEQAEYLESITDLD-VVLYLD--V-SEEELVDRLTGRRVC-PDCGANYHVEFNQPEEEGVC 149 (215)
T ss_pred -HHHh-cCCCEEEcCCCCCHHHHHHHHHhcCCC-EEEEEe--C-CHHHHHHHHhCCCcC-cccCCccccCCCCCcccccC
Confidence 1122 234689998555666666665543322 255555 4 467788888776421 11 0 0
Q ss_pred -------CCCChHHHHHHHHHHHHhhhcccccCC
Q 004941 460 -------EEPDFEAGLQDFKNRLANYEKVYEPVD 486 (722)
Q Consensus 460 -------~~~d~e~a~~df~~Ri~~y~~~yEpl~ 486 (722)
.. ..++..+.+.+|+..|.+.-+|+-
T Consensus 150 ~~~~~rl~~-R~dD~~e~i~~Rl~~y~~~~~~v~ 182 (215)
T PRK14530 150 DECGGELIQ-RDDDTEETVRERLDVFEENTEPVI 182 (215)
T ss_pred cccCCcccC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 223455678899999988666654
No 111
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.56 E-value=3.5e-07 Score=93.53 Aligned_cols=147 Identities=16% Similarity=0.167 Sum_probs=83.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhcCCCCCCCCCCCCHHHHHHHH-------HHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN-------EVAALAME 393 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy-Rr~~~g~~~~~~~~~~~~~~~~~~~~-------~va~~~l~ 393 (722)
-|+++|.|||||||+|+.|++++++. +++.|+. |+....... ...+....+. ++...++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~-----~is~~dl~r~~~~~~~~-------~~~~~~~~~~~g~~~p~~~~~~~i- 68 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIP-----HISTGDMLRAAVKAGTE-------LGKEAKSYMDAGELVPDEIVIGLV- 68 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEECCccHHHHHhccch-------HHHHHHHHHHcCCcCCHHHHHHHH-
Confidence 48899999999999999999998877 5555433 433221100 0000000000 1111111
Q ss_pred HHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhcC-----------CC-
Q 004941 394 DMISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQS-----------PD- 457 (722)
Q Consensus 394 d~~~~l~~--~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~v-iflE~~c~d~~~i~~ri~~r~~~~-----------pd- 457 (722)
...+.. .+..+|+|+...+..+.+.+.+. ...+..+ .+|.+.|+ ++++.+|+..|.... |.
T Consensus 69 --~~~l~~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~ 145 (215)
T PRK00279 69 --KERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVP-DEELVERLSGRRICPACGRTYHVKFNPPK 145 (215)
T ss_pred --HHHHhccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHhCCcccCccCCcccccCCCCC
Confidence 112222 23479999977777777777655 4444433 45666676 567777887664200 00
Q ss_pred -----------CCCCCChHHHHHHHHHHHHhhhcccccCC
Q 004941 458 -----------YAEEPDFEAGLQDFKNRLANYEKVYEPVD 486 (722)
Q Consensus 458 -----------~~~~~d~e~a~~df~~Ri~~y~~~yEpl~ 486 (722)
... ..++..+.+.+|+..|++..+|+-
T Consensus 146 ~~~~~~~~~~~l~~--r~dd~~~~i~~Rl~~y~~~~~~i~ 183 (215)
T PRK00279 146 VEGKCDVCGEELIQ--RADDNEETVRKRLEVYHKQTAPLI 183 (215)
T ss_pred CcCcCcCCCCcccC--CCCCCHHHHHHHHHHHHHhhHHHH
Confidence 111 123455678889999988877765
No 112
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.48 E-value=1.1e-06 Score=84.49 Aligned_cols=122 Identities=15% Similarity=0.197 Sum_probs=78.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh-hHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 397 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd-yRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~ 397 (722)
-|.+|++.|.+||||||++++|.+.|+|..++.|-|+.-. .++...|.. .-++++---...+...++..+.
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~Gip----LnD~DR~pWL~~i~~~~~~~l~---- 82 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIP----LNDDDRWPWLKKIAVELRKALA---- 82 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCC----CCcccccHHHHHHHHHHHHHhh----
Confidence 4669999999999999999999999998865555554422 233333322 2222232223333333333333
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHc-------CCceEEEEEEEeCCHHHHHHHHHHhhh
Q 004941 398 WMHEGGQVGIFDATNSSRKRRNMLMKMAE-------GNCKIIFLETICNDRDIIERNIRLKIQ 453 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~~~~~R~~~~~l~~-------~~~~viflE~~c~d~~~i~~ri~~r~~ 453 (722)
.|+-||+.+....+..|+.++.-.+ ...++.|+-... ..++|..|+..|+.
T Consensus 83 ----~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~g 140 (191)
T KOG3354|consen 83 ----SGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRKG 140 (191)
T ss_pred ----cCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHHHhhccc
Confidence 7999999888889999999998421 123344444444 57888888887753
No 113
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.47 E-value=4.3e-07 Score=92.57 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=81.3
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhcCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHH
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMED 394 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy-Rr~~~g~~~~~~~~~~~~~~~~~~~-------~~va~~~l~d 394 (722)
|+++|.|||||||+|+.|+++++.. +++.|+. |+..... .. ........+ .++...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~-----~is~gdllr~~~~~~-~~------~~~~~~~~~~~g~~vp~~~~~~l--- 66 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLP-----HISTGDLLRAEIKAG-TP------LGKKAKEYMEKGELVPDEIVNQL--- 66 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC-----eeehhHHHHHhhccc-cH------HHHHHHHHHhCCCCCCHHHHHHH---
Confidence 7889999999999999999988766 5666544 3322110 00 000000000 0111111
Q ss_pred HHHHHhc---CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhc------------CC---
Q 004941 395 MISWMHE---GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ------------SP--- 456 (722)
Q Consensus 395 ~~~~l~~---~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~------------~p--- 456 (722)
+.+.+.+ .+..+|+|+...+..+.+.+.+..... ...+|.+.|+ ++++.+|+..|... .|
T Consensus 67 ~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~-~~~vi~L~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~ 144 (210)
T TIGR01351 67 VKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEK-IDAVIELDVP-DEELVERLSGRRICPSCGRVYHLKFNPPKVP 144 (210)
T ss_pred HHHHHhcCcccCCcEEEeCCCCCHHHHHHHHHHhccC-CCEEEEEECC-HHHHHHHHHCCCccCCcCCccccccCCCccC
Confidence 1223332 257899999767777777777664311 1234444564 67777888776410 00
Q ss_pred --------CCCCCCChHHHHHHHHHHHHhhhcccccCCC
Q 004941 457 --------DYAEEPDFEAGLQDFKNRLANYEKVYEPVDE 487 (722)
Q Consensus 457 --------d~~~~~d~e~a~~df~~Ri~~y~~~yEpl~e 487 (722)
.... ..++-.+-+.+|+..|.+.-.|+-+
T Consensus 145 ~~~~~~~~~l~~--R~dD~~e~i~~Rl~~y~~~~~~v~~ 181 (210)
T TIGR01351 145 GCDDCTGELLIQ--REDDTEEVVKKRLEVYKEQTEPLID 181 (210)
T ss_pred CcCcccCCcccc--CCCCCHHHHHHHHHHHHHhhHHHHH
Confidence 0000 1223456678899999887777653
No 114
>PRK06217 hypothetical protein; Validated
Probab=98.47 E-value=2e-06 Score=85.70 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=70.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 401 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~~ 401 (722)
-|+++|.|||||||+|++|++.|+.. +++.|++.... . ...+...... +.+...+...+ .
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-----~~~~D~~~~~~---~-~~~~~~~~~~---~~~~~~~~~~~-------~- 62 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-----HLDTDDYFWLP---T-DPPFTTKRPP---EERLRLLLEDL-------R- 62 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-----EEEcCceeecc---C-CCCccccCCH---HHHHHHHHHHH-------h-
Confidence 48999999999999999999998654 67776663311 1 1112111111 11112222222 1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhc---CCCCCCCCChHHHHHHHHHHHHhh
Q 004941 402 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ---SPDYAEEPDFEAGLQDFKNRLANY 478 (722)
Q Consensus 402 ~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~---~pd~~~~~d~e~a~~df~~Ri~~y 478 (722)
.+...|+|+... . .++.+. ...+ .++||+ | +.+++.+|+..|... +|...+. +.+....+|.+++..|
T Consensus 63 ~~~~~vi~G~~~-~-~~~~~~--~~~d-~~i~Ld--~-~~~~~~~Rl~~R~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~ 133 (183)
T PRK06217 63 PREGWVLSGSAL-G-WGDPLE--PLFD-LVVFLT--I-PPELRLERLRLREFQRYGNRILPGG-DMHKASLEFLEWAASY 133 (183)
T ss_pred cCCCEEEEccHH-H-HHHHHH--hhCC-EEEEEE--C-CHHHHHHHHHcCcccccCcccCCCC-CHHHHHHHHHHHHHhc
Confidence 345678884432 1 222211 2223 367776 3 577788888776421 2222333 4556666777777655
Q ss_pred h
Q 004941 479 E 479 (722)
Q Consensus 479 ~ 479 (722)
.
T Consensus 134 ~ 134 (183)
T PRK06217 134 D 134 (183)
T ss_pred c
Confidence 3
No 115
>PRK03839 putative kinase; Provisional
Probab=98.44 E-value=6.2e-07 Score=88.89 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=57.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 401 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~~ 401 (722)
.|+++|+|||||||+|++|++.++.. ++|.|++-+.. +. ...+....+..++.++..+... +
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~-----~id~d~~~~~~-~~---~~~~~~~~~~~~~~l~~~~~~~-------~-- 63 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYE-----YVDLTEFALKK-GI---GEEKDDEMEIDFDKLAYFIEEE-------F-- 63 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEehhhhhhhc-CC---cccCChhhhcCHHHHHHHHHHh-------c--
Confidence 58999999999999999999998766 67777663211 11 1112222222233333322221 1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 004941 402 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 452 (722)
Q Consensus 402 ~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~ 452 (722)
.+..+|+|+.+. .+...++ ++|+. | +++++.+|+..|.
T Consensus 64 ~~~~vIidG~~~---------~l~~~~~-vi~L~--~-~~~~~~~Rl~~R~ 101 (180)
T PRK03839 64 KEKNVVLDGHLS---------HLLPVDY-VIVLR--A-HPKIIKERLKERG 101 (180)
T ss_pred cCCCEEEEeccc---------cccCCCE-EEEEE--C-CHHHHHHHHHHcC
Confidence 245588887432 1222332 45555 3 6788889987663
No 116
>PRK04040 adenylate kinase; Provisional
Probab=98.40 E-value=3.8e-06 Score=84.52 Aligned_cols=39 Identities=31% Similarity=0.378 Sum_probs=31.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
+.+|+++|.|||||||+++.|+++|. ....+++.|++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~---~~~~~~~~g~~~~ 40 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK---EDYKIVNFGDVML 40 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc---cCCeEEecchHHH
Confidence 56899999999999999999999984 1244677788744
No 117
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.39 E-value=9.7e-07 Score=81.24 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=29.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+|+++|.|||||||+|+.|++.++.. +++.|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~-----~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFP-----VISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCE-----EEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCe-----EEEecce
Confidence 68999999999999999999998655 7888885
No 118
>PRK06696 uridine kinase; Validated
Probab=98.30 E-value=1.2e-06 Score=90.35 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=38.4
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
..+|++|.+.|.|||||||+|++|++.|+..|..+.++++|+|-
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 45789999999999999999999999998777777777888774
No 119
>PRK14528 adenylate kinase; Provisional
Probab=98.30 E-value=5e-06 Score=83.37 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=78.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-----ADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~-----~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
.|++.|.|||||||+|+.|+++++.. +++.|+.-+.....+.. ..|...... .-..++... +.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~-----~is~~~~lr~~~~~~~~~g~~~~~~~~~g~l----vp~~~~~~~---~~ 70 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIP-----QISTGDILREAVKNQTAMGIEAKRYMDAGDL----VPDSVVIGI---IK 70 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC-----eeeCCHHHHHHhhcCCHHHHHHHHHHhCCCc----cCHHHHHHH---HH
Confidence 47889999999999999999998655 56666662221111100 000000000 000111111 11
Q ss_pred HHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCCc-eEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 004941 397 SWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 472 (722)
Q Consensus 397 ~~l~~--~G~vVIvDAtn~~~~~R~~~~~l-~~~~~-~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~ 472 (722)
+.+.+ ....+|+|.--.+.+.-+.+.++ ...+. .-.+|.+.|+ ++++.+|+..|..... ..++..+-+.
T Consensus 71 ~~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~-~~~~~~Rl~~R~~~~g------r~dd~~e~i~ 143 (186)
T PRK14528 71 DRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVP-DGELLKRLLGRAEIEG------RADDNEATIK 143 (186)
T ss_pred HHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhcCccccC------CCCCCHHHHH
Confidence 22222 23568999865556666666655 22222 1234445565 5677777776643111 1223345578
Q ss_pred HHHHhhhcccccCCC
Q 004941 473 NRLANYEKVYEPVDE 487 (722)
Q Consensus 473 ~Ri~~y~~~yEpl~e 487 (722)
+|+..|.+..+|+-+
T Consensus 144 ~Rl~~y~~~~~pv~~ 158 (186)
T PRK14528 144 NRLDNYNKKTLPLLD 158 (186)
T ss_pred HHHHHHHHHhHHHHH
Confidence 899999888888753
No 120
>PRK02496 adk adenylate kinase; Provisional
Probab=98.27 E-value=5.6e-06 Score=82.37 Aligned_cols=139 Identities=16% Similarity=0.187 Sum_probs=74.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMED 394 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~-------~~va~~~l~d 394 (722)
-|+++|.|||||||+|+.|++.++.. +++.|+.-+......... .......+ .++...++
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~-----~i~~~~~~~~~~~~~~~~------g~~~~~~~~~g~~~~~~~~~~~l-- 69 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIP-----HISTGDILRQAIKEQTPL------GIKAQGYMDKGELVPDQLVLDLV-- 69 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEEhHHHHHHHHhccChh------HHHHHHHHHCCCccCHHHHHHHH--
Confidence 47889999999999999999998755 566655533221110000 00000000 01111111
Q ss_pred HHHHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCCc-eEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 004941 395 MISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 470 (722)
Q Consensus 395 ~~~~l~~--~G~vVIvDAtn~~~~~R~~~~~l-~~~~~-~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~d 470 (722)
...+.. ....+|+|+...+..+...+.++ ...+. ...+|.+.| +++++.+|+..|.. ++ +.+ +-
T Consensus 70 -~~~l~~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~-~~~~~~~Rl~~R~~--~d-----d~~---~~ 137 (184)
T PRK02496 70 -QERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDV-PDDVVVERLLARGR--KD-----DTE---EV 137 (184)
T ss_pred -HHHHhCcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeC-CHHHHHHHHhcCCC--CC-----CCH---HH
Confidence 122221 23468999887777776666655 22221 223344445 57788888876632 21 222 34
Q ss_pred HHHHHHhhhcccccC
Q 004941 471 FKNRLANYEKVYEPV 485 (722)
Q Consensus 471 f~~Ri~~y~~~yEpl 485 (722)
+.+|++.|++.-+|+
T Consensus 138 ~~~r~~~y~~~~~~v 152 (184)
T PRK02496 138 IRRRLEVYREQTAPL 152 (184)
T ss_pred HHHHHHHHHHHHHHH
Confidence 667888887744443
No 121
>PRK08356 hypothetical protein; Provisional
Probab=98.26 E-value=2.6e-05 Score=78.63 Aligned_cols=120 Identities=18% Similarity=0.130 Sum_probs=61.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhcCCCCCCCCC-CC------CHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFR-AD------NPEGMEARNEVAAL 390 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy-Rr~~~g~~~~~~~~~-~~------~~~~~~~~~~va~~ 390 (722)
+.++|+++|.|||||||+|+.|++ + |.. +++.++. |+... ......+|. +. ....+....+++..
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~-~---g~~--~is~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~ 76 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE-K---GFC--RVSCSDPLIDLLT-HNVSDYSWVPEVPFKGEPTRENLIELGRYLKE 76 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH-C---CCc--EEeCCCccccccc-ccccccccccHHHHhhccccccHHHHHHHHHH
Confidence 446899999999999999999963 3 333 4555543 22111 111111221 10 00111111122220
Q ss_pred ------HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 004941 391 ------AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 453 (722)
Q Consensus 391 ------~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~ 453 (722)
..+.++..+.. +..+|+|.. .+...++.+... +..++||. | +.+++.+|+..|..
T Consensus 77 ~yG~~~~~~~~~~~~~~-~~~ividG~-r~~~q~~~l~~~---~~~vi~l~--~-~~~~~~~Rl~~R~~ 137 (195)
T PRK08356 77 KYGEDILIRLAVDKKRN-CKNIAIDGV-RSRGEVEAIKRM---GGKVIYVE--A-KPEIRFERLRRRGA 137 (195)
T ss_pred hcCcHHHHHHHHHHhcc-CCeEEEcCc-CCHHHHHHHHhc---CCEEEEEE--C-CHHHHHHHHHhcCC
Confidence 00111222322 336888876 666665555542 33456665 4 46888888887654
No 122
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.26 E-value=5.7e-06 Score=85.84 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=82.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHH--H-----HHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR--N-----EVAALAM 392 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~--~-----~va~~~l 392 (722)
|+-|+++|.|||||||+|+.|+++++.. +++.|+.-|........ + +.+....+ . ++....+
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~-----~is~gdllr~~~~~~t~--l----g~~i~~~~~~G~lvpd~iv~~lv 74 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLK-----HINMGNILREEIKAKTT--I----GKEIQKVVTSGNLVPDNLVIAIV 74 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCc-----EEECChHHHHHhhcCCh--H----HHHHHHHHHcCCcCCHHHHHHHH
Confidence 4459999999999999999999998876 67777664432211100 0 01000000 0 1111111
Q ss_pred H-HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhc-----------------
Q 004941 393 E-DMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ----------------- 454 (722)
Q Consensus 393 ~-d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~----------------- 454 (722)
. .+.+.+...+...|+|+..-+..++..+.+... ...++...++ ++++.+|+..|...
T Consensus 75 ~~~l~~~~~~~~~g~iLDGfPRt~~Qa~~l~~~~~---~~~vi~l~~~-~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~ 150 (229)
T PTZ00088 75 KDEIAKVTDDCFKGFILDGFPRNLKQCKELGKITN---IDLFVNIYLP-RNILIKKLLGRRICNTCNRNFNIAHIRSDPY 150 (229)
T ss_pred HHHHHhhccccCceEEEecCCCCHHHHHHHHhcCC---CCEEEEEeCC-HHHHHHHHHcCcCCCccCCcceecccccccc
Confidence 1 111112234677999996667777766654422 1234444565 55566666655310
Q ss_pred -CC---------------CCCCCCChHHHHHHHHHHHHhhhcccccCC
Q 004941 455 -SP---------------DYAEEPDFEAGLQDFKNRLANYEKVYEPVD 486 (722)
Q Consensus 455 -~p---------------d~~~~~d~e~a~~df~~Ri~~y~~~yEpl~ 486 (722)
.| ... . ..++-.+-+.+|+..|++.-+|+-
T Consensus 151 ~~pp~~~~~~c~~~~~~~~l~-~-R~DD~~e~i~~Rl~~Y~~~t~pl~ 196 (229)
T PTZ00088 151 DMPPILPPADCEGCKGNPKLQ-K-RSDDTEEIVAHRLNTYESTNSPII 196 (229)
T ss_pred cCCCCCCCCcccccCCccccc-C-CCCCCHHHHHHHHHHHHHHhHHHH
Confidence 01 000 1 234456678899999988777764
No 123
>PLN02674 adenylate kinase
Probab=98.24 E-value=7.1e-06 Score=85.82 Aligned_cols=149 Identities=21% Similarity=0.226 Sum_probs=85.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHH-------HHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAM 392 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~-------~~va~~~l 392 (722)
+.-|++.|.|||||||+|+.|++++++. .++.|+.-|........ .+....+.+ .++...++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~-----his~GdllR~~i~~~s~------~g~~i~~~~~~G~lvpd~iv~~lv 99 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLC-----HLATGDMLRAAVAAKTP------LGIKAKEAMDKGELVSDDLVVGII 99 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCc-----EEchhHHHHHHHhccCh------hhHHHHHHHHcCCccCHHHHHHHH
Confidence 3568899999999999999999998876 66776664432211110 011111100 01111111
Q ss_pred HHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhc---C----------
Q 004941 393 EDMISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQ---S---------- 455 (722)
Q Consensus 393 ~d~~~~l~--~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~v-iflE~~c~d~~~i~~ri~~r~~~---~---------- 455 (722)
. +.|. +.+..+|+|..-.+..+-+.+.++ ...+..+ .+|++.| +++++.+|+..|... +
T Consensus 100 ~---~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v-~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp 175 (244)
T PLN02674 100 D---EAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAI-DDAILEERITGRWIHPSSGRTYHTKFAPP 175 (244)
T ss_pred H---HHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHhccccccccCCccccccCCC
Confidence 1 1222 235679999888888877777665 3333322 3444456 467777887766321 0
Q ss_pred -----------CCCCCCCChHHHHHHHHHHHHhhhcccccCC
Q 004941 456 -----------PDYAEEPDFEAGLQDFKNRLANYEKVYEPVD 486 (722)
Q Consensus 456 -----------pd~~~~~d~e~a~~df~~Ri~~y~~~yEpl~ 486 (722)
+... ..++-.+-..+|++.|.+.-+|+-
T Consensus 176 ~~~~~~~~~g~~L~~---R~DD~~e~i~~RL~~Y~~~t~pv~ 214 (244)
T PLN02674 176 KVPGVDDVTGEPLIQ---RKDDTAAVLKSRLEAFHKQTEPVI 214 (244)
T ss_pred cccCcccccCCcccc---CCCCCHHHHHHHHHHHHHHhHHHH
Confidence 0011 234455678899999987777765
No 124
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.23 E-value=1e-05 Score=80.75 Aligned_cols=151 Identities=14% Similarity=0.082 Sum_probs=83.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHH------H
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED------M 395 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d------~ 395 (722)
+|.++|.|||||||+|+.|++.|...+.++.+++.|+|-+-........+.++....--+..+.+....+.+. .
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 5789999999999999999999988888999999999944110011111222221111122222222221110 0
Q ss_pred HHHH-----------hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHH-HHHHHHHHhhhcCCCCCCCCC
Q 004941 396 ISWM-----------HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRD-IIERNIRLKIQQSPDYAEEPD 463 (722)
Q Consensus 396 ~~~l-----------~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~-~i~~ri~~r~~~~pd~~~~~d 463 (722)
++|- .....++|+++.+.-.. .++++.. -.+||+ ++.+. .+.+|+.+.... .+. +
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~---~l~~~~d---~~I~vd--~~~~~~rl~rri~RD~~~----rg~-~ 147 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNE---RLRSLLD---IRVAVS--GGVHLNRLLRRVVRDIQF----RGY-S 147 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCH---hHHhhcC---EEEEEe--CCccHHHHHHHHHHhHHh----hCC-C
Confidence 0000 01346899998887532 3444422 235666 33333 466777655432 233 5
Q ss_pred hHHHHHHHHHHHHhhhcccccCC
Q 004941 464 FEAGLQDFKNRLANYEKVYEPVD 486 (722)
Q Consensus 464 ~e~a~~df~~Ri~~y~~~yEpl~ 486 (722)
.++.+.. ..+++.++..|+|..
T Consensus 148 ~~~~i~~-~~~~~~~~~~~~~~~ 169 (179)
T cd02028 148 AELTILM-WPSVPSGEEFIIPPL 169 (179)
T ss_pred HHHHhhh-cccccCchhhcCCCc
Confidence 5666665 456777777776644
No 125
>PRK04182 cytidylate kinase; Provisional
Probab=98.23 E-value=2.6e-06 Score=83.63 Aligned_cols=33 Identities=33% Similarity=0.484 Sum_probs=28.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
++|+++|.|||||||+|+.|++.|++. ++|.|+
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~-----~id~~~ 33 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLK-----HVSAGE 33 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCc-----EecHHH
Confidence 379999999999999999999998765 677655
No 126
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.22 E-value=5.6e-05 Score=81.14 Aligned_cols=130 Identities=12% Similarity=0.138 Sum_probs=82.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC--------CCCC-------CCCCH----
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--------ADFF-------RADNP---- 378 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~--------~~~~-------~~~~~---- 378 (722)
..|++|+++|.+||||||+|++|+++|+.. .+++.|.+|+.+...... ..|. .+..+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~----~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l 165 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIR----SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVI 165 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCC----EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhh
Confidence 478999999999999999999999998532 377788888654321100 0110 01111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhc
Q 004941 379 EGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ 454 (722)
Q Consensus 379 ~~~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~ 454 (722)
.+|..-.+.....++.++.-....|..+|+-+....++..+... .++. .++.+-|...+++.+++|+..|.+.
T Consensus 166 ~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~--~~~~-~~i~~~l~i~~ee~h~~RF~~R~~~ 238 (301)
T PRK04220 166 YGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKY--LENP-NVFMFVLTLSDEEAHKARFYARARV 238 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhh--hcCC-CEEEEEEEECCHHHHHHHHHHHHhh
Confidence 12333333333335555555555799999999999998643311 2222 2344456678999999999888664
No 127
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.21 E-value=1.5e-05 Score=75.51 Aligned_cols=145 Identities=17% Similarity=0.161 Sum_probs=73.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 401 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~~ 401 (722)
+|+++|.|||||||+|+.|++.++.. +++.|............ .. .... ...+.....+. -+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~-----~~~~~~i~~e~~~~~~~-~~--~~~~----~i~~~l~~~~~----~~~~ 64 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLP-----YLDTGGIRTEEVGKLAS-EV--AAIP----EVRKALDERQR----ELAK 64 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCc-----eeccccCCHHHHHHHHH-Hh--cccH----hHHHHHHHHHH----HHhh
Confidence 58999999999999999999998766 44443221111000000 00 0000 01111111111 1222
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH-hhhc
Q 004941 402 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA-NYEK 480 (722)
Q Consensus 402 ~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~-~y~~ 480 (722)
+..+|+|+...... +......++||+ .++++..+|+..|..... .+. +.+++.+.+.+|-+ .++.
T Consensus 65 -~~~~Vidg~~~~~~-------~~~~~~~~i~l~---~~~~~r~~R~~~r~~~~~--~~~-~~~~~~~~~~~~d~~~~~~ 130 (147)
T cd02020 65 -KPGIVLEGRDIGTV-------VFPDADLKIFLT---ASPEVRAKRRAKQLQAKG--EGV-DLEEILAEIIERDERDSTR 130 (147)
T ss_pred -CCCEEEEeeeeeeE-------EcCCCCEEEEEE---CCHHHHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHHHhhhc
Confidence 34577777653110 111112345555 456666666655432211 123 67888888887754 3455
Q ss_pred ccccCCCCCeEEEeec
Q 004941 481 VYEPVDEGSYIKMIDM 496 (722)
Q Consensus 481 ~yEpl~e~~yik~i~~ 496 (722)
.++|.+...|-.+||.
T Consensus 131 ~~~~~~~~~~dl~i~~ 146 (147)
T cd02020 131 YVAPLKLAEDAIVIDT 146 (147)
T ss_pred ccccccCCCCcEEEeC
Confidence 5566655567666664
No 128
>PRK08233 hypothetical protein; Provisional
Probab=98.21 E-value=2.7e-05 Score=76.63 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
++++|++.|.|||||||+|++|++.|.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 357999999999999999999999875
No 129
>PRK13808 adenylate kinase; Provisional
Probab=98.20 E-value=9.4e-06 Score=88.30 Aligned_cols=148 Identities=16% Similarity=0.230 Sum_probs=79.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHHH
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMEDM 395 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~-------~~va~~~l~d~ 395 (722)
|+|+|-|||||||+|+.|++.++.. +++.|+.-|......... +......+ .++...++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~-----~is~gdlLR~~i~~~s~~------g~~~~~~~~~G~lVPdeiv~~li~-- 69 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIV-----QLSTGDMLRAAVAAGTPV------GLKAKDIMASGGLVPDEVVVGIIS-- 69 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc-----eecccHHHHHHhhcCChh------hHHHHHHHHcCCCCCHHHHHHHHH--
Confidence 7889999999999999999998765 666665533221111100 00000000 111111111
Q ss_pred HHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhcCCC-CCCCCChHHHHHH
Q 004941 396 ISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPD-YAEEPDFEAGLQD 470 (722)
Q Consensus 396 ~~~l~--~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~v-iflE~~c~d~~~i~~ri~~r~~~~pd-~~~~~d~e~a~~d 470 (722)
+.|. +....+|+|.-..+.++.+.+.++ ...++.+ ++|++.| +++++.+|+..|...... .... ..++-.+.
T Consensus 70 -e~l~~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDV-p~evll~Rl~~R~~~~~~rg~~~-R~DD~~E~ 146 (333)
T PRK13808 70 -DRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRV-NEGALLARVETRVAEMRARGEEV-RADDTPEV 146 (333)
T ss_pred -HHHhcccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEEC-CHHHHHHHHHcCcccccccCCcc-CCCCCHHH
Confidence 1121 123468999855566776666655 3323222 3444456 467778888765321000 0001 22334567
Q ss_pred HHHHHHhhhcccccCC
Q 004941 471 FKNRLANYEKVYEPVD 486 (722)
Q Consensus 471 f~~Ri~~y~~~yEpl~ 486 (722)
|.+|+..|+..-+|+-
T Consensus 147 i~kRL~~Y~~~t~PLl 162 (333)
T PRK13808 147 LAKRLASYRAQTEPLV 162 (333)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 8899999988766654
No 130
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.19 E-value=8.9e-06 Score=79.22 Aligned_cols=36 Identities=31% Similarity=0.389 Sum_probs=30.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
++|+++|.|||||||+|+.|++.|+.. +++.|++.+
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~-----~~~~~~~~~ 36 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLK-----LISAGDIFR 36 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCc-----eecHHHHHH
Confidence 379999999999999999999998765 777766433
No 131
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.18 E-value=9.9e-05 Score=73.21 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=29.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
++|++.|.+||||||+++.|+++|...|.++..+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4799999999999999999999998777776555
No 132
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.15 E-value=1.5e-05 Score=79.73 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=22.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.+|+++|.+|||||||++.|+..+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3789999999999999999988764
No 133
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.15 E-value=2.2e-05 Score=77.48 Aligned_cols=26 Identities=27% Similarity=0.184 Sum_probs=23.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
.+|+++|.+||||||+++.|++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 47999999999999999999987653
No 134
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.14 E-value=0.00012 Score=73.64 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=29.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEE
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 353 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v 353 (722)
+.+|++.|.+||||||+++.|+++|...|..+.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 5689999999999999999999999776655444
No 135
>PRK07667 uridine kinase; Provisional
Probab=98.13 E-value=4.7e-05 Score=76.75 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=38.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.+++|.+.|.|||||||+|+.|++.|...|.++.+++.|+|
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 45899999999999999999999999988999999999986
No 136
>PRK14526 adenylate kinase; Provisional
Probab=98.13 E-value=1.5e-05 Score=81.80 Aligned_cols=145 Identities=18% Similarity=0.233 Sum_probs=80.0
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHHH
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMEDM 395 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~-------~~va~~~l~d~ 395 (722)
|+++|.|||||||+|+.|++.++.. .++.|+.-|........ ........+ .+++..++.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~-----~is~G~llr~~~~~~t~------~g~~i~~~~~~g~lvpd~~~~~lv~-- 69 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYY-----HISTGDLFRENILNSTP------LGKEIKQIVENGQLVPDSITIKIVE-- 69 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc-----eeecChHHHHhcccCCh------hhHHHHHHHHcCccCChHHHHHHHH--
Confidence 7789999999999999999988765 56666552211111100 001111100 112212222
Q ss_pred HHHHh--cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcC------------C-----
Q 004941 396 ISWMH--EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQS------------P----- 456 (722)
Q Consensus 396 ~~~l~--~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~------------p----- 456 (722)
+.|. .....+|+|+..-+..+-+.+.+... . ..++++.|+ ++++.+|+..|.... |
T Consensus 70 -~~l~~~~~~~g~ilDGfPR~~~Qa~~l~~~~~-~--~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~ 144 (211)
T PRK14526 70 -DKINTIKNNDNFILDGFPRNINQAKALDKFLP-N--IKIINFLID-EELLIKRLSGRRICKSCNNIFNIYTLPTKEKGI 144 (211)
T ss_pred -HHHhcccccCcEEEECCCCCHHHHHHHHHhcC-C--CEEEEEECC-HHHHHHHHHCCCcccccCCccccccCCCCccCc
Confidence 2222 12456788977667666666655422 1 234555564 677778887664210 0
Q ss_pred ------CCCCCCChHHHHHHHHHHHHhhhcccccCCC
Q 004941 457 ------DYAEEPDFEAGLQDFKNRLANYEKVYEPVDE 487 (722)
Q Consensus 457 ------d~~~~~d~e~a~~df~~Ri~~y~~~yEpl~e 487 (722)
... . ..++..+-+.+|++.|.+.-+|+-+
T Consensus 145 ~~~~~~~l~-~-R~DD~~e~i~~Rl~~y~~~t~pv~~ 179 (211)
T PRK14526 145 CDVCKGDLY-Q-RKDDKEESLKTRLQEYKLQTKPLIE 179 (211)
T ss_pred CCCCCCeee-c-cCCCCHHHHHHHHHHHHHhhhHHHH
Confidence 000 1 2344566788999999888777653
No 137
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.12 E-value=2.3e-05 Score=79.13 Aligned_cols=27 Identities=33% Similarity=0.305 Sum_probs=24.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
...+|+++|.+|||||||++.|++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 356899999999999999999998864
No 138
>PRK06761 hypothetical protein; Provisional
Probab=98.11 E-value=1.3e-05 Score=85.41 Aligned_cols=122 Identities=14% Similarity=0.095 Sum_probs=73.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 399 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy-Rr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l 399 (722)
.+|+++|+|||||||+++.|+++|...+++++++..++. +.... .....|..++..+..+.....++...+ --
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~--~~~~~~~~eer~~~l~~~~~f~~~l~~----~~ 77 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADY--DGVACFTKEEFDRLLSNYPDFKEVLLK----NV 77 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhh--ccccCCCHHHHHHHHHhhhHHHHHHHH----HH
Confidence 589999999999999999999999988888887643322 22111 112223222223223333333322221 11
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHH-H-HcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 004941 400 HEGGQVGIFDATNSSRKRRNMLMK-M-AEGNCKIIFLETICNDRDIIERNIRLKI 452 (722)
Q Consensus 400 ~~~G~vVIvDAtn~~~~~R~~~~~-l-~~~~~~viflE~~c~d~~~i~~ri~~r~ 452 (722)
...|..+|+-..-.....|+.+.. + ... .+.++. .+ +++.+++|+.+|.
T Consensus 78 ~~~g~~~i~~~~~l~~~yr~~~~~~~~~~~--~v~~~h-~~-p~e~i~~R~~~rw 128 (282)
T PRK06761 78 LKKGDYYLLPYRKIKNEFGDQFSDELFNDI--SKNDIY-EL-PFDKNTELITDRW 128 (282)
T ss_pred HHcCCeEEEEehhhhHHHhhhhhhhhcccc--eeeeee-cC-CHHHHHHHHHHHH
Confidence 135788888777777888888885 2 222 233333 33 6788888887663
No 139
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.10 E-value=3.3e-05 Score=76.31 Aligned_cols=26 Identities=23% Similarity=0.077 Sum_probs=23.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
+|+++|.|||||||+++.|+..+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~~ 28 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAGD 28 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCcC
Confidence 78999999999999999999987643
No 140
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.09 E-value=5.4e-05 Score=75.66 Aligned_cols=142 Identities=18% Similarity=0.233 Sum_probs=79.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMED 394 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~-------~~va~~~l~d 394 (722)
-|++.|.|||||||+|++|+++++-. .+|.|++=+ .+.... .+...+....+ ..+...++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~-----hlstgd~~r--~~~~~~----t~lg~~~k~~i~~g~lv~d~i~~~~v~- 69 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP-----HLDTGDILR--AAIAER----TELGEEIKKYIDKGELVPDEIVNGLVK- 69 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc-----EEcHhHHhH--hhhccC----ChHHHHHHHHHHcCCccchHHHHHHHH-
Confidence 37899999999999999999997665 566655522 111111 01111111101 012212222
Q ss_pred HHHHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 004941 395 MISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 470 (722)
Q Consensus 395 ~~~~l~~--~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~v-iflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~d 470 (722)
.++.+ ....+|+|.-..+...-+.+..+ .+.|.+. ..+++.+++ +.+-.|+..|.. . .++..+.
T Consensus 70 --~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~-~~~~~r~~~r~~----r-----~dd~~~~ 137 (178)
T COG0563 70 --ERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPE-ELLLERLLGRRV----R-----EDDNEET 137 (178)
T ss_pred --HHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCH-HHHHHHHhCccc----c-----ccCCHHH
Confidence 22332 22279999988887765555555 4444333 344555554 777777765532 1 1233445
Q ss_pred HHHHHHhhhcccccCCC
Q 004941 471 FKNRLANYEKVYEPVDE 487 (722)
Q Consensus 471 f~~Ri~~y~~~yEpl~e 487 (722)
+.+|+..|.+.-.|+-+
T Consensus 138 ~~~R~~~y~~~~~pli~ 154 (178)
T COG0563 138 VKKRLKVYHEQTAPLIE 154 (178)
T ss_pred HHHHHHHHHhcccchhh
Confidence 68889988887777654
No 141
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.09 E-value=0.00012 Score=73.15 Aligned_cols=35 Identities=31% Similarity=0.342 Sum_probs=30.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
.++|++.|.|||||||+++.|++.|...|..+.++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999999999999998877666543
No 142
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.09 E-value=2.3e-05 Score=79.94 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..+.+|+++|.||||||||+++|.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46789999999999999999999764
No 143
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.08 E-value=5.4e-05 Score=74.06 Aligned_cols=134 Identities=19% Similarity=0.293 Sum_probs=75.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 400 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~-~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~ 400 (722)
||+=++-+||||||+|.+|+.-++ |-.+..|-+ ...... +.++.+++ -|.
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI------------------~~k~~~-------~f~~~~l~----~L~ 51 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGEWGHVQNDNI------------------TGKRKP-------KFIKAVLE----LLA 51 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCCCCccccCCC------------------CCCCHH-------HHHHHHHH----HHh
Confidence 466678999999999999999888 775444433 111111 11222222 121
Q ss_pred -cCCeEEEEeCCCCCHHHHHHHHHH---HcC-------CceEEEEEEEeCC-HH----HHHHHHHHhhhcCCCCCCCCCh
Q 004941 401 -EGGQVGIFDATNSSRKRRNMLMKM---AEG-------NCKIIFLETICND-RD----IIERNIRLKIQQSPDYAEEPDF 464 (722)
Q Consensus 401 -~~G~vVIvDAtn~~~~~R~~~~~l---~~~-------~~~viflE~~c~d-~~----~i~~ri~~r~~~~pd~~~~~d~ 464 (722)
..-.+||+|=.|.....|+++++. .+. +++++-|...-++ .+ +...|+..|- ...+.. ..
T Consensus 52 ~~~~~vViaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RG---DNHQTi-ka 127 (168)
T PF08303_consen 52 KDTHPVVIADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARG---DNHQTI-KA 127 (168)
T ss_pred hCCCCEEEEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcC---cCccee-ec
Confidence 357899999999998888888765 222 5555555543322 22 4455555442 222111 11
Q ss_pred HH-HHHHHHHHHHhhhcccccCCCC
Q 004941 465 EA-GLQDFKNRLANYEKVYEPVDEG 488 (722)
Q Consensus 465 e~-a~~df~~Ri~~y~~~yEpl~e~ 488 (722)
+. -.+....-+..+.+-|||++++
T Consensus 128 ~~~~~~~~~~Im~gFi~rfep~~~~ 152 (168)
T PF08303_consen 128 DSKDEKKVEGIMEGFIKRFEPVDPD 152 (168)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCC
Confidence 11 1233444555566667787754
No 144
>PRK06547 hypothetical protein; Provisional
Probab=98.08 E-value=6.4e-05 Score=74.70 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=30.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
..+.+|++.|.|||||||+|+.|++.++.. +++.|+|
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~-----~~~~d~~ 49 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQ-----LVHLDDL 49 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCC-----eecccce
Confidence 467899999999999999999999986544 6666665
No 145
>PRK07261 topology modulation protein; Provisional
Probab=98.06 E-value=1.8e-05 Score=78.34 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
-|+++|.|||||||+|++|++.++..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~ 27 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCP 27 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 38899999999999999999887654
No 146
>PRK13975 thymidylate kinase; Provisional
Probab=98.05 E-value=8.7e-05 Score=74.27 Aligned_cols=27 Identities=33% Similarity=0.333 Sum_probs=24.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
+.+|++.|++||||||+|+.|+++|+.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999999999974
No 147
>PRK08118 topology modulation protein; Reviewed
Probab=98.04 E-value=2.6e-05 Score=77.00 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=23.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhc
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
|+++|.|||||||+|++|++.++..
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 8899999999999999999998765
No 148
>PRK15453 phosphoribulokinase; Provisional
Probab=98.03 E-value=2.6e-05 Score=82.85 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=39.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
++.+|+++|.|||||||+|++|++.|+..++.+.+++.|+|.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4678999999999999999999999988888899999999865
No 149
>PLN02459 probable adenylate kinase
Probab=98.03 E-value=4.1e-05 Score=80.67 Aligned_cols=150 Identities=17% Similarity=0.233 Sum_probs=83.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHH-------HHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALA 391 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~-------~~va~~~ 391 (722)
+++.|+++|-|||||||+|+.|+++++.. .++.|+.-|........ ........+ .+++..+
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~-----~is~gdllR~ei~~~t~------lg~~i~~~~~~G~lVPdeiv~~l 96 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVP-----HIATGDLVREEIKSSGP------LGAQLKEIVNQGKLVPDEIIFSL 96 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCc-----EEeCcHHHHHHHhccch------hHHHHHHHHHcCCccCHHHHHHH
Confidence 44668889999999999999999998766 66666653322111100 011111111 1122222
Q ss_pred HHHHHHHHh----cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcC---CCCCC----
Q 004941 392 MEDMISWMH----EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQS---PDYAE---- 460 (722)
Q Consensus 392 l~d~~~~l~----~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~---pd~~~---- 460 (722)
+. ..|. .....+|+|+---+..+-+.+..+..-. .+|++.|+ ++++.+|+..|.... ..|.-
T Consensus 97 l~---~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id---~Vi~L~v~-d~~l~~Rl~gR~~~~~~g~~Yn~~~~~ 169 (261)
T PLN02459 97 LS---KRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDID---LVVNLKLR-EEVLVEKCLGRRICSECGKNFNVADID 169 (261)
T ss_pred HH---HHHhcccccCCceEEEeCCCCCHHHHHHHHhcCCCC---EEEEEECC-HHHHHHHhhccccccccCccccccccc
Confidence 22 2222 1246799999888877777666543212 24455565 566667777653200 00000
Q ss_pred --------------------------CCChHHHHHHHHHHHHhhhcccccCCC
Q 004941 461 --------------------------EPDFEAGLQDFKNRLANYEKVYEPVDE 487 (722)
Q Consensus 461 --------------------------~~d~e~a~~df~~Ri~~y~~~yEpl~e 487 (722)
. ..++-.+-+.+|++.|.+.-.|+-+
T Consensus 170 ~~~~~~~~~~~~~p~~~~~~~~~~L~~-R~DD~~e~i~kRL~~Y~~~t~pv~~ 221 (261)
T PLN02459 170 LKGEDGRPGIVMPPLLPPPECASKLIT-RADDTEEVVKARLRVYKEESQPVED 221 (261)
T ss_pred cccccccccccCCCCCCCccccccccc-CCCCCHHHHHHHHHHHHHHhHHHHH
Confidence 1 2244456678899999888777653
No 150
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.99 E-value=6.6e-05 Score=76.29 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=34.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.++.+|.++|.+||||||||+.|++.+. +..+.+++.|+|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~~ 43 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDSY 43 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCcc
Confidence 3688999999999999999999999873 446667888877
No 151
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.99 E-value=0.00011 Score=78.79 Aligned_cols=105 Identities=14% Similarity=0.243 Sum_probs=62.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 400 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~ 400 (722)
.+|+++|++||||||+++.|+. +++. .+|. . ... .+.+++..+... . .
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~~-~g~~-----~~d~--~-----------------~~~---L~~~l~~~~~~~---~-~ 54 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALED-LGYY-----CVDN--L-----------------PPS---LLPKLVELLAQS---G-G 54 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-cCCe-----EECC--c-----------------CHH---HHHHHHHHHHhc---C-C
Confidence 4899999999999999999973 2332 2211 1 111 111222221110 0 0
Q ss_pred cCCeEEEEeCCCCC--HHHHHHHHHHHcCCce--EEEEEEEeCCHHHHHHHHHHhhhcCCCCCC
Q 004941 401 EGGQVGIFDATNSS--RKRRNMLMKMAEGNCK--IIFLETICNDRDIIERNIRLKIQQSPDYAE 460 (722)
Q Consensus 401 ~~G~vVIvDAtn~~--~~~R~~~~~l~~~~~~--viflE~~c~d~~~i~~ri~~r~~~~pd~~~ 460 (722)
.....|++|..+.. ++.++.+..+.+.|+. ++||+ .+.+++.+|+....+.+|...+
T Consensus 55 ~~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~---a~~e~L~~Rl~~~rr~RPLl~~ 115 (288)
T PRK05416 55 IRKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLD---ASDEVLIRRYSETRRRHPLSGD 115 (288)
T ss_pred CCCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEE---CCHHHHHHHHhhcccCCCccCC
Confidence 13468999998763 3566777777555654 46666 4678888999765445676543
No 152
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.99 E-value=2.3e-05 Score=76.17 Aligned_cols=133 Identities=21% Similarity=0.272 Sum_probs=69.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh-hHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 399 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd-yRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l 399 (722)
++|.+.|+|||||||+|+.|+++|+.. +++.|. +|......+.+..-|....++..+ += ..++....-+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~-----~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~----iD-~~iD~rq~e~ 70 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLK-----LVSAGTIFREMARERGMSLEEFSRYAEEDPE----ID-KEIDRRQKEL 70 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCc-----eeeccHHHHHHHHHcCCCHHHHHHHHhcCch----hh-HHHHHHHHHH
Confidence 368899999999999999999999876 444332 366554444431111111111100 00 0111111112
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhhh
Q 004941 400 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 479 (722)
Q Consensus 400 ~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~~y~ 479 (722)
...|.+|+ ..+-..|.......++ +||. .+.++-.+||..|.. . +.++++.....|-..-+
T Consensus 71 a~~~nvVl-------egrLA~Wi~k~~adlk-I~L~---Apl~vRa~Ria~REg-------i-~~~~a~~~~~~RE~se~ 131 (179)
T COG1102 71 AKEGNVVL-------EGRLAGWIVREYADLK-IWLK---APLEVRAERIAKREG-------I-DVDEALAETVEREESEK 131 (179)
T ss_pred HHcCCeEE-------hhhhHHHHhccccceE-EEEe---CcHHHHHHHHHHhcC-------C-CHHHHHHHHHHHHHHHH
Confidence 22455555 2344444433223333 4554 467888888887742 2 56777666665544433
Q ss_pred ccc
Q 004941 480 KVY 482 (722)
Q Consensus 480 ~~y 482 (722)
+-|
T Consensus 132 kRY 134 (179)
T COG1102 132 KRY 134 (179)
T ss_pred HHH
Confidence 333
No 153
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.98 E-value=5.2e-05 Score=73.03 Aligned_cols=131 Identities=19% Similarity=0.310 Sum_probs=71.3
Q ss_pred EEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHH------HHHHHHHHHH-H
Q 004941 325 LVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNE------VAALAMEDMI-S 397 (722)
Q Consensus 325 lvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~------va~~~l~d~~-~ 397 (722)
+.|-|||||||+|+.|+++++.. .++.++.-|..... .++.+.+.... +-...+-+++ .
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~-----~is~~~llr~~~~~---------~s~~g~~i~~~l~~g~~vp~~~v~~ll~~ 66 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV-----HISVGDLLREEIKS---------DSELGKQIQEYLDNGELVPDELVIELLKE 66 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE-----EEEHHHHHHHHHHT---------TSHHHHHHHHHHHTTSS--HHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc-----eechHHHHHHHHhh---------hhHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 57999999999999999997655 77777664422211 11111111000 0011111121 1
Q ss_pred HHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 004941 398 WMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 473 (722)
Q Consensus 398 ~l~--~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~v-iflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~ 473 (722)
.+. ......|+|.---+.++-+.+.+. ...++.+ .+|...|++ +.+.+|+.. + + .+.+.+
T Consensus 67 ~l~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~-~~~~~R~~~---------d--~----~~~i~~ 130 (151)
T PF00406_consen 67 RLEQPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPD-ETLIERLSQ---------D--N----EEVIKK 130 (151)
T ss_dssp HHHSGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--H-HHHHHHHHT---------G--S----HHHHHH
T ss_pred HHhhhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccch-hhhhhhccc---------C--C----HHHHHH
Confidence 222 236788999988777776666654 2234443 566667864 566666643 1 1 223667
Q ss_pred HHHhhhcccccC
Q 004941 474 RLANYEKVYEPV 485 (722)
Q Consensus 474 Ri~~y~~~yEpl 485 (722)
|++.|.+.-+|+
T Consensus 131 Rl~~y~~~~~~i 142 (151)
T PF00406_consen 131 RLEEYRENTEPI 142 (151)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877665554
No 154
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.97 E-value=8.4e-05 Score=74.72 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
++.+|+|+|.||||||||+++|.+.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 678999999999999999999987753
No 155
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.96 E-value=6.2e-05 Score=75.76 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=85.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCc----eEEEechhhHHHh-----hcCC-CCCCCCCCCCHHHHHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHD----TKHFNVGKYRRLK-----HGVN-QSADFFRADNPEGMEARNEVAALA 391 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~----t~v~~~ddyRr~~-----~g~~-~~~~~~~~~~~~~~~~~~~va~~~ 391 (722)
+|-++|.|||||||+|++|+..|+..++. ..++..|+|.+.. .+.. ....|..+. .-.+..+.+....+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~-a~d~~~l~~~l~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPD-AFDFDLLKEDLKAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGG-GBSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCcc-ccCHHHHHHHHHHH
Confidence 68899999999999999999999987776 5566666653211 1111 111222111 11133333322221
Q ss_pred HHHH------HHH----------HhcCCeEEEEeCCCCC-HHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhc
Q 004941 392 MEDM------ISW----------MHEGGQVGIFDATNSS-RKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ 454 (722)
Q Consensus 392 l~d~------~~~----------l~~~G~vVIvDAtn~~-~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~ 454 (722)
.+.- ++| ......+||+++.+.- .+. ++.+.. + .+||+ ++.+..+.||+.+....
T Consensus 80 ~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~---l~~l~D--~-~ifld--~~~~~~l~Rri~RD~~~ 151 (194)
T PF00485_consen 80 KNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEE---LRDLFD--L-KIFLD--ADEDLRLERRIQRDVAE 151 (194)
T ss_dssp HTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHC---HGGG-S--E-EEEEE--E-HHHHHHHHHHHHHHH
T ss_pred hCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeee---ecccce--e-EEEec--ccHHHHHHHHhhhhccc
Confidence 1100 000 0123468888888753 222 333322 2 35777 34444678888776542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhhcccccCCC
Q 004941 455 SPDYAEEPDFEAGLQDFKNRLANYEKVYEPVDE 487 (722)
Q Consensus 455 ~pd~~~~~d~e~a~~df~~Ri~~y~~~yEpl~e 487 (722)
.+. +.+++++.|..+.+.|++..+|-.+
T Consensus 152 ----rG~-~~~~~~~~~~~~~~~~~~~I~p~~~ 179 (194)
T PF00485_consen 152 ----RGR-SPEEVIAQYERVRPGYERYIEPQKE 179 (194)
T ss_dssp ----S-S--HHHHHHHHHTHHHHHHHCTGGGGG
T ss_pred ----cCC-cceeEEEEeecCChhhhhheecccc
Confidence 234 7899999999999999988888654
No 156
>PRK14529 adenylate kinase; Provisional
Probab=97.95 E-value=2.8e-05 Score=80.37 Aligned_cols=114 Identities=13% Similarity=0.204 Sum_probs=64.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhcCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHH
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMED 394 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy-Rr~~~g~~~~~~~~~~~~~~~~~~~-------~~va~~~l~d 394 (722)
|+|.|.|||||||+|+.|+++++..++++ ++. |....+ ... ...+..+.+ .++...+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~-----gdllr~~i~~---~t~----lg~~i~~~i~~G~lvpdei~~~l--- 67 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIES-----GAIFREHIGG---GTE----LGKKAKEYIDRGDLVPDDITIPM--- 67 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCccc-----chhhhhhccC---CCh----HHHHHHHHHhccCcchHHHHHHH---
Confidence 78899999999999999999998765433 222 321110 000 011111111 1111121
Q ss_pred HHHHHhcC-CeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhh
Q 004941 395 MISWMHEG-GQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKI 452 (722)
Q Consensus 395 ~~~~l~~~-G~vVIvDAtn~~~~~R~~~~~l-~~~~~~v-iflE~~c~d~~~i~~ri~~r~ 452 (722)
+.+.|.+. ....|+|..--+..+-+.+.++ .+.++.+ .+|+..|+ ++++.+|+..|.
T Consensus 68 v~~~l~~~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~-~~~l~~Rl~~R~ 127 (223)
T PRK14529 68 ILETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLP-REVAKNRIMGRR 127 (223)
T ss_pred HHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHhhCCc
Confidence 22233322 4679999998888887777665 3333222 34455565 577777777663
No 157
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.90 E-value=3.3e-05 Score=81.51 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=37.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
+|.++|.+||||||+|++|++.|+..+.++.+++.|+|.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 4889999999999999999999998888999999999966
No 158
>PRK13973 thymidylate kinase; Provisional
Probab=97.89 E-value=0.00083 Score=68.78 Aligned_cols=35 Identities=26% Similarity=0.148 Sum_probs=31.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
+++|++-|.+||||||.++.|+++|...|+++...
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999999999999999999998888887665
No 159
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.00015 Score=80.39 Aligned_cols=44 Identities=36% Similarity=0.534 Sum_probs=40.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
..|.+|+|+||-||||||.|.+||+||...+.++-++..|-||=
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 46899999999999999999999999999999999998888855
No 160
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.86 E-value=8e-05 Score=76.24 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=84.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCC----CCCCCCCCCHHHHHHHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ----SADFFRADNPEGMEARNEVAALAME 393 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~----~~~~~~~~~~~~~~~~~~va~~~l~ 393 (722)
.++++|-+.|-+||||||+|+.|...|+-. ..-+++.|+|=+-...... ...|. ....--..++.+-...+++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~~~~~~~~~~~~~n~d-~p~A~D~dLl~~~L~~L~~ 82 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKDQSHLPFEERNKINYD-HPEAFDLDLLIEHLKDLKQ 82 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccccccchhhcCHhhcCCcCcc-ChhhhcHHHHHHHHHHHHc
Confidence 356899999999999999999999998733 5556777777331111100 01111 1111112222222222111
Q ss_pred ------HHHHHHh----------cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCC
Q 004941 394 ------DMISWMH----------EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPD 457 (722)
Q Consensus 394 ------d~~~~l~----------~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd 457 (722)
=+++|-. ....+||+++...--. +.++++.. + -+||+ ++.+..+.||+.+....
T Consensus 83 g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~~~d--~-kIfvd--td~D~RliRri~RD~~~--- 152 (218)
T COG0572 83 GKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRDLMD--L-KIFVD--TDADVRLIRRIKRDVQE--- 152 (218)
T ss_pred CCcccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHhhcC--E-EEEEe--CCccHHHHHHHHHHHHH---
Confidence 0111210 1245777777765444 23444432 2 24666 45566778888766542
Q ss_pred CCCCCChHHHHHHHH-HHHHhhhcccccCCC
Q 004941 458 YAEEPDFEAGLQDFK-NRLANYEKVYEPVDE 487 (722)
Q Consensus 458 ~~~~~d~e~a~~df~-~Ri~~y~~~yEpl~e 487 (722)
.+. +.+..++.|. ..-+.|++.-||..+
T Consensus 153 -rg~-~~e~vi~qy~~~vkp~~~~fIeptk~ 181 (218)
T COG0572 153 -RGR-DLESVIEQYVKTVRPMYEQFIEPTKK 181 (218)
T ss_pred -hCC-CHHHHHHHHHHhhChhhhhccCcccc
Confidence 234 7788888888 444666666666553
No 161
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.82 E-value=0.00025 Score=71.84 Aligned_cols=39 Identities=23% Similarity=0.130 Sum_probs=31.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH 364 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~ 364 (722)
.+|.++|.|||||||+|+.|++.++.. ++|.|+..+...
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~-----~i~~D~~~~~~~ 40 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIP-----ILDADIYAREAL 40 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCe-----EeeCcHHHHHHH
Confidence 369999999999999999999887766 677777766443
No 162
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.77 E-value=0.00018 Score=80.91 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=39.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
.+|.+|+|+|++|+||||++.+||.+|...|.++-+++.|-||
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4578999999999999999999999998888999999999997
No 163
>PLN02348 phosphoribulokinase
Probab=97.77 E-value=0.00018 Score=79.81 Aligned_cols=158 Identities=13% Similarity=0.198 Sum_probs=82.7
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcC---------------CceEEEechhhHHH-hhcCCC-CCCCCCCCCHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG---------------HDTKHFNVGKYRRL-KHGVNQ-SADFFRADNPE 379 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g---------------~~t~v~~~ddyRr~-~~g~~~-~~~~~~~~~~~ 379 (722)
..+|++|-+.|-|||||||+|+.|++.|+..+ ..+.++..|+|=.. ..+... ...+..+ ...
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP-~a~ 124 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDP-RAN 124 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCc-ccc
Confidence 35789999999999999999999999997532 35678999988110 000000 0011111 111
Q ss_pred HHHHHHHHHHHHHHH------HHHHH---------hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHH
Q 004941 380 GMEARNEVAALAMED------MISWM---------HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDII 444 (722)
Q Consensus 380 ~~~~~~~va~~~l~d------~~~~l---------~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i 444 (722)
.+..+.+....+.+. .+++- .....++|+...+..... .++.+. . ..+||+ |+.+..+
T Consensus 125 dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e--~lr~l~--D-~~IyVd--~~~dvrl 197 (395)
T PLN02348 125 NFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDE--RVRDLL--D-FSIYLD--ISDDVKF 197 (395)
T ss_pred cHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCc--cccccC--c-EEEEEE--CCHHHHH
Confidence 233333333322210 00000 012357777765542211 122221 1 245665 4544556
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhhhcccccCCC
Q 004941 445 ERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEPVDE 487 (722)
Q Consensus 445 ~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~~y~~~yEpl~e 487 (722)
.+|+++.... .+. +.+++.+.+.+|.+.|.+..+|-..
T Consensus 198 ~RRI~RD~~e----RG~-S~EeV~~~i~ar~pd~~~yI~pqk~ 235 (395)
T PLN02348 198 AWKIQRDMAE----RGH-SLESIKASIEARKPDFDAYIDPQKQ 235 (395)
T ss_pred HHHHHhhHhh----cCC-CHHHHHHHHHhcCcchhhhcccccc
Confidence 6677665432 234 6788877777777776666565443
No 164
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.75 E-value=0.00037 Score=67.81 Aligned_cols=149 Identities=11% Similarity=0.124 Sum_probs=100.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 399 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l 399 (722)
|.+.+|.|..||||||+-..+...+. ....++|.|+.-. ...+.. .+...++ .++ ...+.+.++
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~---~~~~~VN~D~iA~---~i~p~~-----p~~~~i~----A~r-~ai~~i~~~ 65 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLL---PGIVFVNADEIAA---QISPDN-----PTSAAIQ----AAR-VAIDRIARL 65 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhc---CCeEEECHHHHhh---hcCCCC-----chHHHHH----HHH-HHHHHHHHH
Confidence 56889999999999998766543332 2556788877722 222211 1121122 111 222344556
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhhh
Q 004941 400 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 479 (722)
Q Consensus 400 ~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~~y~ 479 (722)
.+.|...+.-.|...+..++.++..+..|+-+....+..+..++-.+|++.|..++.- +. -.+....+|.+++++..
T Consensus 66 I~~~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH--~I-pED~Ir~RY~rsle~l~ 142 (187)
T COG4185 66 IDLGRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGH--DI-PEDKIRRRYRRSLELLA 142 (187)
T ss_pred HHcCCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCC--CC-cHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999888987766666667778999999988764432 22 23456677888888777
Q ss_pred cccccCCC
Q 004941 480 KVYEPVDE 487 (722)
Q Consensus 480 ~~yEpl~e 487 (722)
..++-.|+
T Consensus 143 ~~l~l~dr 150 (187)
T COG4185 143 QALTLADR 150 (187)
T ss_pred HHHhhcce
Confidence 77776664
No 165
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.00056 Score=71.02 Aligned_cols=130 Identities=17% Similarity=0.222 Sum_probs=80.4
Q ss_pred CCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC--------C--------CCCCCCC-
Q 004941 315 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--------A--------DFFRADN- 377 (722)
Q Consensus 315 ~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~--------~--------~~~~~~~- 377 (722)
++...|++|++-|-||.||||+|..||++|+- +. ++.+|-.|..+.+.-.. . ..-...+
T Consensus 84 r~~~~p~IILIGGasGVGkStIA~ElA~rLgI---~~-visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~p 159 (299)
T COG2074 84 RKMKRPLIILIGGASGVGKSTIAGELARRLGI---RS-VISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENP 159 (299)
T ss_pred hccCCCeEEEecCCCCCChhHHHHHHHHHcCC---ce-eecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcc
Confidence 34557999999999999999999999999763 33 56677778765432110 0 0000111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHH-HHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 004941 378 -PEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKR-RNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 453 (722)
Q Consensus 378 -~~~~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~~-R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~ 453 (722)
-.+|+...+.+.-..+.++.-..+.|..+|+-.+..-+.. +.... +..++..-+...|+++++.|+..|..
T Consensus 160 iiaGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~~-----~~n~~~~~l~i~dee~Hr~RF~~R~~ 232 (299)
T COG2074 160 IIAGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEAL-----GNNVFMFMLYIADEELHRERFYDRIR 232 (299)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhhh-----ccceEEEEEEeCCHHHHHHHHHHHHH
Confidence 1223333333333333333333448999999999888775 22222 22234444567899999999998865
No 166
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.70 E-value=0.00039 Score=69.46 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=22.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
.+|+++|.+|+||+|++++|.+..
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 579999999999999999998874
No 167
>PLN02924 thymidylate kinase
Probab=97.65 E-value=0.0018 Score=66.87 Aligned_cols=37 Identities=38% Similarity=0.522 Sum_probs=33.1
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
..+.+|++.|.+||||||+++.|+++|...|+++.++
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~ 50 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELW 50 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceee
Confidence 3567999999999999999999999999998887655
No 168
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.64 E-value=0.00089 Score=66.93 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
+|++.|.+||||||+++.|+++++.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~ 25 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGY 25 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999998654
No 169
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.63 E-value=0.00071 Score=68.34 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=29.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 363 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~ 363 (722)
.+|.++|.+||||||+++.|++ ++.. ++|.|++-+..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~-----~i~~D~~~~~~ 39 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAP-----VIDADAIAHEV 39 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCE-----EEEecHHHHHH
Confidence 5799999999999999999997 5544 67777665543
No 170
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.62 E-value=0.00068 Score=67.85 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=29.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 363 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~ 363 (722)
+|.++|-|||||||+|+.|++..++. ++|.|++-+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~-----~i~~D~~~~~~ 37 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFP-----VIDADKIAHQV 37 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCe-----EEeCCHHHHHH
Confidence 37899999999999999999875444 67777775543
No 171
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.61 E-value=0.00028 Score=81.13 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=31.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh-hHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRR 361 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd-yRr 361 (722)
++.+|.+.|.+||||||+|+.|+++|++. ++|.|+ ||.
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~-----~~d~g~~YR~ 321 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLL-----YLDTGAMYRA 321 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCe-----EecCCceehH
Confidence 45789999999999999999999999765 666554 444
No 172
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.59 E-value=0.0014 Score=65.19 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=62.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCC-CCCCCHHHHHHHH-------------
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADF-FRADNPEGMEARN------------- 385 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~-~~~~~~~~~~~~~------------- 385 (722)
+.+|||+|.+|||||||++.|.+.+.-.-......-+ |.-+.+-....+| |- +.+.+..+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TT---R~~r~~E~~g~~y~fv--s~~~f~~~~~~~~fie~~~~~g 76 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTT---RPPRPGEVDGVDYHFV--SKEEFERMIKAGEFIEYGEYDG 76 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEES---S-GGTTS-TTTSEEE----HHHHHHHHHTTHEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecc---cCCcccccCCcceEEE--eechhhhhhccccEEEEeeecc
Confidence 4578999999999999999999876522111111111 3222211111111 21 222222221
Q ss_pred -------HHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 004941 386 -------EVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 451 (722)
Q Consensus 386 -------~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r 451 (722)
..+..+++ .|.++|+|.. .+.+..+.+.+...++|-+.++..+.++++++++
T Consensus 77 ~~YGt~~~~i~~~~~--------~gk~~il~~~------~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r 135 (183)
T PF00625_consen 77 NYYGTSKSAIDKVLE--------EGKHCILDVD------PEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRR 135 (183)
T ss_dssp EEEEEEHHHHHHHHH--------TTTEEEEEET------HHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTT
T ss_pred hhhhhccchhhHhhh--------cCCcEEEEcc------HHHHHHHHhcccCceEEEEEccchHHHHHHHhcc
Confidence 12222333 7899999865 2445555444666666766778889999998654
No 173
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.58 E-value=0.0023 Score=66.18 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=35.6
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEE-Eechhh
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH-FNVGKY 359 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v-~~~ddy 359 (722)
..++.+|.+.|.+||||||+++.|+..+...+....+ ++.|+|
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 4578999999999999999999999999877666555 666654
No 174
>PRK10867 signal recognition particle protein; Provisional
Probab=97.58 E-value=0.00049 Score=77.78 Aligned_cols=45 Identities=33% Similarity=0.439 Sum_probs=40.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEechhhHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYRRL 362 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~-g~~t~v~~~ddyRr~ 362 (722)
..|.+|+|+|++|+||||++..||.+|... |.++-+++.|.||-.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 458899999999999999999999999877 899999999988763
No 175
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.57 E-value=0.001 Score=66.89 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=31.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
+|.++|.+||||||+|+.|+..+ .+..+.+++.|+|-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 57899999999999999999987 34567788888773
No 176
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.57 E-value=0.0019 Score=64.36 Aligned_cols=145 Identities=17% Similarity=0.274 Sum_probs=81.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHH----------HHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR----------NEVA 388 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~----------~~va 388 (722)
.+.+|++.|-|||||=|.+.+|+++++|. .+++||.-|...... .++.+.... .++.
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ft-----HlSaGdLLR~E~~~~--------gse~g~~I~~~i~~G~iVP~ei~ 73 (195)
T KOG3079|consen 7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFT-----HLSAGDLLRAEIASA--------GSERGALIKEIIKNGDLVPVEIT 73 (195)
T ss_pred CCCEEEEEcCCCCCcchHHHHHHHHcCce-----eecHHHHHHHHHccc--------cChHHHHHHHHHHcCCcCcHHHH
Confidence 56688899999999999999999998876 778777644332211 112221111 1233
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcC-CceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 004941 389 ALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEG-NCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG 467 (722)
Q Consensus 389 ~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~-~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a 467 (722)
..+|++...-..+.+. .++|.---..++...|...... ---++|++ |+ +++.-+|+..|-+.+. -.+ +-
T Consensus 74 ~~LL~~am~~~~~~~~-fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fd--c~-ee~~l~Rll~R~q~~~-R~D-----Dn 143 (195)
T KOG3079|consen 74 LSLLEEAMRSSGDSNG-FLIDGYPRNVDQLVEFERKIQGDPDFVLFFD--CP-EETMLKRLLHRGQSNS-RSD-----DN 143 (195)
T ss_pred HHHHHHHHHhcCCCCe-EEecCCCCChHHHHHHHHHhcCCCCEEEEEe--CC-HHHHHHHHHhhcccCC-CCC-----Cc
Confidence 3333322222222222 8888766667777777665431 22355665 66 4545555555544322 222 23
Q ss_pred HHHHHHHHHhhhcccccCC
Q 004941 468 LQDFKNRLANYEKVYEPVD 486 (722)
Q Consensus 468 ~~df~~Ri~~y~~~yEpl~ 486 (722)
.+-.++|++.|.+.=.|+-
T Consensus 144 ~esikkR~et~~~~t~Pvi 162 (195)
T KOG3079|consen 144 EESIKKRLETYNKSTLPVI 162 (195)
T ss_pred hHHHHHHHHHHHHcchHHH
Confidence 3446788888866655543
No 177
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.56 E-value=0.00068 Score=68.77 Aligned_cols=42 Identities=36% Similarity=0.418 Sum_probs=36.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
|.+|+|+|.+|+||||.+-+||.++...+.+.-++..|.||-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 679999999999999999999999987788998999888853
No 178
>PTZ00301 uridine kinase; Provisional
Probab=97.55 E-value=0.00098 Score=68.39 Aligned_cols=156 Identities=15% Similarity=0.188 Sum_probs=81.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh-cCCc-eEEEechhhHHHhhcCCCC-CCCCCCCCHHH--HHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW-LGHD-TKHFNVGKYRRLKHGVNQS-ADFFRADNPEG--MEARNEVAALAMED 394 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~-~g~~-t~v~~~ddyRr~~~g~~~~-~~~~~~~~~~~--~~~~~~va~~~l~d 394 (722)
.++|-+.|-|||||||+|+.|++.|.. .+.. +.++..|+|=+-....... .+..+-+...+ ...+.+....+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 468999999999999999999988853 2333 3477778773311111100 11112122222 22222222222110
Q ss_pred ------HHHHHh----------cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCC
Q 004941 395 ------MISWMH----------EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDY 458 (722)
Q Consensus 395 ------~~~~l~----------~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~ 458 (722)
.++|-. ....++|+++..... ...++.+. .+ .+||+ |+.+..+.||+++....
T Consensus 83 ~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~--~~~l~~l~--D~-~ifvd--~~~d~~~~Rr~~Rd~~~---- 151 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFT--NAELRNEM--DC-LIFVD--TPLDICLIRRAKRDMRE---- 151 (210)
T ss_pred CcccCCCcccccCCcCCceEEeCCCcEEEEechhhhC--CHHHHHhC--CE-EEEEe--CChhHHHHHHHhhhHHh----
Confidence 011110 124688888877621 12333332 22 25776 56556677777655432
Q ss_pred CCCCChHHHHHHHHHH-HHhhhcccccCCC
Q 004941 459 AEEPDFEAGLQDFKNR-LANYEKVYEPVDE 487 (722)
Q Consensus 459 ~~~~d~e~a~~df~~R-i~~y~~~yEpl~e 487 (722)
.+. +.+.+++.|.++ ...+.+.-+|...
T Consensus 152 rG~-~~e~v~~~~~~~v~~~~~~~I~p~k~ 180 (210)
T PTZ00301 152 RGR-TFESVIEQYEATVRPMYYAYVEPSKV 180 (210)
T ss_pred cCC-CHHHHHHHHHHhhcccHHHHcCcccc
Confidence 234 678887777775 3455555556543
No 179
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.53 E-value=0.0013 Score=67.71 Aligned_cols=26 Identities=31% Similarity=0.211 Sum_probs=23.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
+|++-|.-||||||+++.|+++|.+.
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~ 26 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMK 26 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 58899999999999999999998764
No 180
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.52 E-value=0.00043 Score=78.37 Aligned_cols=44 Identities=41% Similarity=0.555 Sum_probs=40.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
.+|.+|+|+|++|+||||++..|+.+|...|.++-+++.|.||-
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 46889999999999999999999999998899999999998865
No 181
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.49 E-value=0.00091 Score=71.30 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=38.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
.++.+|+|+|.+|+||||++..|+.++...|.++-+++.|-||.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 45779999999999999999999999988888999999887755
No 182
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.46 E-value=0.00088 Score=66.65 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=28.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 363 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~ 363 (722)
+|.++|.|||||||+|+.|++ ++.. ++|.|++-+..
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~-----~i~~D~~~~~~ 36 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIP-----VIDADKIAHEV 36 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCC-----EEecCHHHHhh
Confidence 488999999999999999998 5544 67777765543
No 183
>PLN02165 adenylate isopentenyltransferase
Probab=97.45 E-value=0.00072 Score=73.69 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=29.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
..+.+|+++|.+|||||+||..|++.+++. +++.|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~e-----IIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSE-----IINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCc-----eecCChh
Confidence 345589999999999999999999998764 5555433
No 184
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.45 E-value=0.0011 Score=65.18 Aligned_cols=40 Identities=45% Similarity=0.580 Sum_probs=36.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
+++++|.||+||||+++.|+..+...+.++-+++.|.+|.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 6899999999999999999999988888898999887754
No 185
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.44 E-value=0.0021 Score=66.30 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=31.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh--cCCceEEEechhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 359 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~--~g~~t~v~~~ddy 359 (722)
+|-+.|-+||||||+|+.|+..|.. .+.++.+++.|+|
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 4678899999999999999999874 4456778888776
No 186
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.44 E-value=0.00091 Score=75.57 Aligned_cols=44 Identities=34% Similarity=0.472 Sum_probs=39.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhhHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR 361 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~-~~g~~t~v~~~ddyRr 361 (722)
.+|.+|+|+|++|+||||+|..||.+|. ..|.++-+++.|-||-
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 4689999999999999999999999986 4688999999998875
No 187
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.00069 Score=73.93 Aligned_cols=106 Identities=22% Similarity=0.316 Sum_probs=68.5
Q ss_pred cCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhc-----C-CCCCCCCCCCCHHHHHHHHH
Q 004941 313 LGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG-----V-NQSADFFRADNPEGMEARNE 386 (722)
Q Consensus 313 ~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g-----~-~~~~~~~~~~~~~~~~~~~~ 386 (722)
+.+...+|-||+++||-|+||||.+.+||.|+...|.++-++..|-||--.+. . ...-.||..+.+.- -..
T Consensus 94 ~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~d---pv~ 170 (483)
T KOG0780|consen 94 LQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEAD---PVK 170 (483)
T ss_pred cccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccc---hHH
Confidence 34556789999999999999999999999999999999999988888652211 1 11123444433321 113
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Q 004941 387 VAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM 424 (722)
Q Consensus 387 va~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l 424 (722)
+|.+. +..|=+++-.++|+|...-.+..-..+.++
T Consensus 171 ia~eg---v~~fKke~fdvIIvDTSGRh~qe~sLfeEM 205 (483)
T KOG0780|consen 171 IASEG---VDRFKKENFDVIIVDTSGRHKQEASLFEEM 205 (483)
T ss_pred HHHHH---HHHHHhcCCcEEEEeCCCchhhhHHHHHHH
Confidence 33332 223444556677777666555555555555
No 188
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.0025 Score=63.76 Aligned_cols=114 Identities=19% Similarity=0.205 Sum_probs=63.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC-CCCCCCCCHHHHHHH-------------
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-ADFFRADNPEGMEAR------------- 384 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~-~~~~~~~~~~~~~~~------------- 384 (722)
+.++|+++|.+|+|||||.++|-+... ..+.. -.-+ |.-+.|--.. +.||-. .++ ++.+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SV-S~TT---R~pR~gEv~G~dY~Fvs-~~E-F~~~i~~~~fLE~a~~~ 75 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSV-SATT---RKPRPGEVDGVDYFFVT-EEE-FEELIERDEFLEWAEYH 75 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEE-Eecc---CCCCCCCcCCceeEeCC-HHH-HHHHHhcCCcEEEEEEc
Confidence 567999999999999999999987762 11110 0111 2222111111 112211 111 1111
Q ss_pred -------HHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 004941 385 -------NEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 453 (722)
Q Consensus 385 -------~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~ 453 (722)
..-+..++. .|..||+|-.- +-++++.+.--.+++|-+.|+.-+.+++|++.|..
T Consensus 76 gnyYGT~~~~ve~~~~--------~G~~vildId~------qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgt 137 (191)
T COG0194 76 GNYYGTSREPVEQALA--------EGKDVILDIDV------QGALQVKKKMPNAVSIFILPPSLEELERRLKGRGT 137 (191)
T ss_pred CCcccCcHHHHHHHHh--------cCCeEEEEEeh------HHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCC
Confidence 122333343 79999998643 33344422111566666778999999999988754
No 189
>PRK07933 thymidylate kinase; Validated
Probab=97.38 E-value=0.0055 Score=62.92 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=30.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
++|++-|.-||||||+++.|+++|...|+++.+.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~ 34 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL 34 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3799999999999999999999999888777654
No 190
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.38 E-value=0.012 Score=58.60 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=24.0
Q ss_pred EEccCCCChHHHHHHHHHHHhhcCCc
Q 004941 325 LVGLPARGKTFTAAKLTRYLRWLGHD 350 (722)
Q Consensus 325 lvGLPGSGKSTlAr~La~~L~~~g~~ 350 (722)
+=|+.||||||+++.|+++|...+++
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~ 26 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYK 26 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 35999999999999999999999887
No 191
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.38 E-value=0.0024 Score=65.12 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=30.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
.++|-++|.|||||||+|+.+++ ++.. ++|+|++-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~-----vidaD~v~r 37 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFP-----VIDADDVAR 37 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCe-----EEEccHHHH
Confidence 46899999999999999999998 6666 788887755
No 192
>PLN02842 nucleotide kinase
Probab=97.37 E-value=0.0028 Score=72.60 Aligned_cols=31 Identities=23% Similarity=0.452 Sum_probs=24.9
Q ss_pred EEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 324 VLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 324 vlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
++.|.|||||||+|+.|+++++.. +++.|+.
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~-----hIs~gdL 31 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLV-----HISTGDL 31 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCC-----EEEccHH
Confidence 478999999999999999998755 4555443
No 193
>PRK14974 cell division protein FtsY; Provisional
Probab=97.34 E-value=0.0015 Score=71.67 Aligned_cols=44 Identities=34% Similarity=0.437 Sum_probs=38.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
.+|.+|+|+|.||+||||++..|+.+|...|.++-+++.|-||.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 35889999999999999999999999988888888888887764
No 194
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.29 E-value=0.0037 Score=63.59 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=31.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.+.+|.++|.+||||||+++.|+..+.. ..+.+++.|+|
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 4579999999999999999999988763 34456767665
No 195
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.27 E-value=0.0014 Score=66.01 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=28.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+|.+.|.|||||||+|+.|++.+. .+.+++.|+|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf 34 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDDF 34 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccccc
Confidence 578899999999999999999873 3557777776
No 196
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.25 E-value=0.00035 Score=58.66 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=25.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
+|+++|.|||||||+|+.|++.| .+.+..++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i 31 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVL 31 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEE
Confidence 47889999999999999999998 44555555
No 197
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=97.24 E-value=0.00029 Score=76.71 Aligned_cols=101 Identities=22% Similarity=0.231 Sum_probs=67.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 398 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~ 398 (722)
.+-+|+++|+||+||||++...-.--+...++.+++ + + .+..-....+.+.
T Consensus 268 ~~eiV~~vgfp~sGks~f~a~~~~~~~y~~vn~d~l----------g-----------~---~~~C~~~~~e~l~----- 318 (422)
T KOG2134|consen 268 HGEIVVAVGFPGSGKSTFAAKRVVPNGYKIVNADTL----------G-----------T---PQNCLLANAEALK----- 318 (422)
T ss_pred CCcEEEEEecCCCCcchhhhhhcccCceeEeecccC----------C-----------C---chhhHHHHHHHhh-----
Confidence 347999999999999999876643322221122211 0 0 1122233333444
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 004941 399 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 452 (722)
Q Consensus 399 l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~ 452 (722)
.|..||+|.||+..+.|..+.+. .+.++.+.++|..|. .+.-+.|+..|.
T Consensus 319 ---~~~sVvidnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s-~eq~~hn~~fR~ 369 (422)
T KOG2134|consen 319 ---HGKSVVIDNTNPDAESRKYYLDCATEREIPIRCFEMNSS-VEQAQHNNRFRE 369 (422)
T ss_pred ---cccEEeeCCCCcchHHHHHHhhhHHHhCccceeeeeccH-HHhhhccccchh
Confidence 79999999999999999999998 566888889998886 455555555543
No 198
>PRK13974 thymidylate kinase; Provisional
Probab=97.24 E-value=0.003 Score=64.62 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=26.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLG 348 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g 348 (722)
..+|++.|.+||||||.++.|+++|...|
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g 31 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSG 31 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999997554
No 199
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.019 Score=58.95 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=31.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
+.++|++-|.=||||||.++.|.++|...|+++...
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t 37 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT 37 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 467999999999999999999999999998866554
No 200
>PRK09169 hypothetical protein; Validated
Probab=97.20 E-value=0.001 Score=85.44 Aligned_cols=138 Identities=11% Similarity=-0.030 Sum_probs=83.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-ADFFRADNPEGMEARNEVAALAMEDMISW 398 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~-~~~~~~~~~~~~~~~~~va~~~l~d~~~~ 398 (722)
...|+|+|++|+|||||++.|+..|++..++ .|.. +....+.+ ..+|...+ .++.. +...+.|++
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiD-----tD~k--Ieks~GrkI~rIFa~eG--~FRe~---Eaa~V~Dll-- 2175 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPH-----SVRK--IAKKIGKKIARIQALRG--LSPEQ---AAARVRDAL-- 2175 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCccc-----cHHH--HHHHhCCCHHHHHHhcC--chHHH---HHHHHHHHh--
Confidence 3468999999999999999999999988444 4333 22222222 22333333 22322 222222222
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCCh--------HHHHHH
Q 004941 399 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF--------EAGLQD 470 (722)
Q Consensus 399 l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~--------e~a~~d 470 (722)
. ..+|+..........+....+.++|+ ++|+. .+.+.+.+|+.... ++|...+. +. ++.++.
T Consensus 2176 ---r-~~vVLSTGGGav~~~enr~~L~~~Gl-vV~L~---an~~tl~~Rty~g~-NRPLL~~~-~~~FEiQFHT~esl~L 2245 (2316)
T PRK09169 2176 ---R-WEVVLPAEGFGAAVEQARQALGAKGL-RVMRI---NNGFAAPDTTYAGL-NVNLRTAA-GLDFEIQFHTADSLRT 2245 (2316)
T ss_pred ---c-CCeEEeCCCCcccCHHHHHHHHHCCE-EEEEE---CCHHHHHHHhccCC-CCccccCC-CCccchhccHHHHHHH
Confidence 1 35566554444444444455566675 56666 57788889987663 46766554 44 667777
Q ss_pred HHHHHHhhhcc
Q 004941 471 FKNRLANYEKV 481 (722)
Q Consensus 471 f~~Ri~~y~~~ 481 (722)
+.+|...|+++
T Consensus 2246 k~eRhpLYEqv 2256 (2316)
T PRK09169 2246 KNKTHKLYEKL 2256 (2316)
T ss_pred HHHhHHHHHHh
Confidence 77888888664
No 201
>PHA00729 NTP-binding motif containing protein
Probab=97.17 E-value=0.0022 Score=66.41 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
..-|+++|-||+||||+|.+|++.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34799999999999999999999875
No 202
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.15 E-value=0.0092 Score=61.54 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=29.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+++|.+.|.+||||||+|+.|+++|+.. +++.|++
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~-----~~~~g~~ 36 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYA-----YLDSGAM 36 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCc-----eeeCchH
Confidence 4689999999999999999999998865 4555544
No 203
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.13 E-value=0.0034 Score=68.40 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=38.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
.++.+|.++|.+|+||||++..|+.++...+.++.+++.|-||
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 3578999999999999999999999998778888888887765
No 204
>PRK13976 thymidylate kinase; Provisional
Probab=97.12 E-value=0.017 Score=59.27 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=27.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhc-CC-ceE
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWL-GH-DTK 352 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~-g~-~t~ 352 (722)
++|++-|.-||||||+++.|+++|... |. ++.
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~ 34 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVV 34 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceE
Confidence 379999999999999999999999875 53 443
No 205
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=97.11 E-value=0.00069 Score=70.29 Aligned_cols=57 Identities=26% Similarity=0.312 Sum_probs=47.4
Q ss_pred cEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCC--------CCCEEEEcChHHHHHHHHHh
Q 004941 530 PILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSE--------RAASIWTSTLQRTILTASPI 595 (722)
Q Consensus 530 ~IyLvRHGes~~n~~~~~~GD~pLTe~G~~QA~~L~~~L~~~l~~~--------~~~~V~sSpl~RaiQTA~~i 595 (722)
-++++|||++.- ..||..|++|+..+|+++++++.+. ..-.+++|+..||+|||+.+
T Consensus 5 v~~~~RHg~r~p---------~~LT~~G~~q~~~~G~~lr~~y~~~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~ 69 (242)
T cd07061 5 VQVLSRHGDRYP---------GELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYIRSSDSQRTLQSAQAF 69 (242)
T ss_pred EEEEEecCCCCc---------hhhhHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEEECCCcHHHHHHHHH
Confidence 467899999842 4599999999999999999876432 23479999999999999998
No 206
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=97.10 E-value=0.013 Score=59.20 Aligned_cols=116 Identities=12% Similarity=0.135 Sum_probs=67.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC--------------------------CCCCC
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--------------------------ADFFR 374 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~--------------------------~~~~~ 374 (722)
++|-++|--||||||+++.+. .++.. ++|.|..-|....++.+ .-+|.
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~-----vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~ 75 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIP-----VIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFS 75 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCc-----EecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhC
Confidence 467889999999999999998 44555 56666554433222211 11222
Q ss_pred CCCH-HHHHHH--HHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 004941 375 ADNP-EGMEAR--NEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 451 (722)
Q Consensus 375 ~~~~-~~~~~~--~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r 451 (722)
+... .....+ =.+..+.++++..++..+-..+|+|. ..+++..-..+-..-+-++|+ +++--+|+-+|
T Consensus 76 ~~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDi--------PLLFE~~~~~~~~~tvvV~cd-~~~Ql~Rl~~R 146 (225)
T KOG3220|consen 76 DPKKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDI--------PLLFEAKLLKICHKTVVVTCD-EELQLERLVER 146 (225)
T ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEec--------hHHHHHhHHhheeeEEEEEEC-cHHHHHHHHHh
Confidence 2111 111111 15667778888888888888999987 456665111122234456886 55555555444
No 207
>PHA03132 thymidine kinase; Provisional
Probab=97.09 E-value=0.039 Score=64.42 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=23.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
.++|++-|..|+||||+++.|++++
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999999998
No 208
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.08 E-value=0.0028 Score=64.71 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=29.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
.+++|.++|-+||||||+++.|.. ++.. ++|.|..-+
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~-----v~d~D~i~~ 40 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCE-----LFEADRVAK 40 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCe-----EEeccHHHH
Confidence 468999999999999999999996 4444 667665544
No 209
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.0075 Score=59.35 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=30.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+++++++|.||+||||+.+.+.+.| ++..++|-|++
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l----~~~~ivNyG~~ 39 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL----VKHKIVNYGDL 39 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH----hhceeeeHhHH
Confidence 6799999999999999999999887 45557777766
No 210
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.05 E-value=0.0039 Score=64.58 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=27.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCce
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDT 351 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t 351 (722)
+.+|.+.|.|||||||+|+.|+++|+...+++
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~ 35 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDT 35 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 57899999999999999999999998663333
No 211
>PRK07429 phosphoribulokinase; Provisional
Probab=97.03 E-value=0.0094 Score=65.26 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=32.7
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
..++++|-++|-+||||||+++.|++.|+.. ...+++.|+|
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~--~~~vi~~Dd~ 45 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEE--LVTVICTDDY 45 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccC--ceEEEEeccc
Confidence 3578999999999999999999999887643 2335666666
No 212
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.00 E-value=0.0038 Score=57.49 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=26.9
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
|+++|.||+||||+|+.|+++++ .....++.++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc---ccccccccccc
Confidence 68999999999999999999974 44555655433
No 213
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=97.00 E-value=0.0099 Score=60.46 Aligned_cols=37 Identities=24% Similarity=0.171 Sum_probs=28.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 363 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~ 363 (722)
++|.++|-+||||||+++.|+. ++. .++|.|++-+..
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~-----~vid~D~i~~~~ 38 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGF-----LIVDADQVARDI 38 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCC-----eEEeCcHHHHHH
Confidence 3799999999999999999986 333 378888764433
No 214
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.00 E-value=0.0013 Score=62.70 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
+|+++|.+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478899999999999999998753
No 215
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.006 Score=58.95 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=29.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
-|+++|=||+||||+|.+||+.++.. .++.+++-|
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~-----~i~isd~vk 43 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLE-----YIEISDLVK 43 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCc-----eEehhhHHh
Confidence 58999999999999999999887755 677777755
No 216
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=96.97 E-value=0.0057 Score=61.30 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=70.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC----------CCCCCCC--------------
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS----------ADFFRAD-------------- 376 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~----------~~~~~~~-------------- 376 (722)
++|-++|-.||||||+++.|++ ++.. ++|.|++-+.....+.. ..++.++
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~-----vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~ 74 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFP-----VIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFS 74 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-E-----EEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTT
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCC-----EECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhc
Confidence 5789999999999999999997 6665 88888775544332211 1222221
Q ss_pred CHHHHHHHHHHHH-HHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 004941 377 NPEGMEARNEVAA-LAMEDMISWMHEG--GQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 453 (722)
Q Consensus 377 ~~~~~~~~~~va~-~~l~d~~~~l~~~--G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~ 453 (722)
+++..+.++.+.. .+.+.+..++... ...+|+|+.-..... +.+.--.+++|. | ++++..+|+..|.
T Consensus 75 d~~~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~------~~~~~D~vi~V~--a-~~e~ri~Rl~~R~- 144 (180)
T PF01121_consen 75 DPEKLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESG------LEKLCDEVIVVY--A-PEEIRIKRLMERD- 144 (180)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTT------GGGGSSEEEEEE-----HHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhh------HhhhhceEEEEE--C-CHHHHHHHHHhhC-
Confidence 2233333333333 2233444455533 268888887654321 111111344444 5 4677777776663
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhhc
Q 004941 454 QSPDYAEEPDFEAGLQDFKNRLANYEK 480 (722)
Q Consensus 454 ~~pd~~~~~d~e~a~~df~~Ri~~y~~ 480 (722)
+. +.++ +.+|+..|..
T Consensus 145 ------~~-~~~~----~~~ri~~Q~~ 160 (180)
T PF01121_consen 145 ------GL-SEEE----AEARIASQMP 160 (180)
T ss_dssp ------TS-THHH----HHHHHHTS--
T ss_pred ------CC-cHHH----HHHHHHhCCC
Confidence 23 4444 4666666543
No 217
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.96 E-value=0.00063 Score=62.51 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEEccCCCChHHHHHHHHHHH
Q 004941 323 IVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L 344 (722)
|++.|.|||||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997
No 218
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.94 E-value=0.013 Score=59.80 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=24.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
..+|++-|.-|+||||||+.|+++|+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC
Confidence 358999999999999999999999873
No 219
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=96.92 E-value=0.0058 Score=59.48 Aligned_cols=125 Identities=15% Similarity=0.167 Sum_probs=71.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh--hcCCceEEEechhhHHHhhc--CCCCCCCCCC-----CCHHH----HHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRRLKHG--VNQSADFFRA-----DNPEG----MEARN 385 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~--~~g~~t~v~~~ddyRr~~~g--~~~~~~~~~~-----~~~~~----~~~~~ 385 (722)
+..+|+|-|-|-+|||.||.+++.-.. |..+..|. |=..+.- .....+|.-+ +..+. +--+.
T Consensus 22 ~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~-----f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~ 96 (205)
T COG3896 22 EGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDL-----FWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPIL 96 (205)
T ss_pred CceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHH-----HHHhCCHHhhccccccccccccccCCceeeEeechhHH
Confidence 345899999999999999999997764 65433332 2111100 0011112111 11111 11112
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHH
Q 004941 386 EVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIR 449 (722)
Q Consensus 386 ~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~ 449 (722)
+.+..-....+.-+.++|..+|.|+.-.+++.--....+. .+++|.|+-+.|++++..+++.+
T Consensus 97 e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l-~g~~v~~VGV~~p~E~~~~Re~r 159 (205)
T COG3896 97 ELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVL-EGCRVWMVGVHVPDEEGARRELR 159 (205)
T ss_pred HHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHH-hCCceEEEEeeccHHHHHHHHhh
Confidence 2222222222233456899999999988766533333332 37899999999998887777766
No 220
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.0048 Score=61.06 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=26.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+|+++|=||+||||+|++|+ .|++. +++..++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~-----~i~l~el 33 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYK-----VIELNEL 33 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCc-----eeeHHHH
Confidence 69999999999999999999 76665 5555455
No 221
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=96.89 E-value=0.0022 Score=64.14 Aligned_cols=119 Identities=19% Similarity=0.277 Sum_probs=66.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceE-EEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---H
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK-HFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI---S 397 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~-v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~---~ 397 (722)
++.++|+|++|||++++.|.-.-..++++.. .+..||++- ...++.+- ...+...+.+.....|...+. +
T Consensus 3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlm---daTpSaD~---a~keqRgr~~~~iEk~ISaiqedtd 76 (291)
T KOG4622|consen 3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLM---DATPSADK---AAKEQRGRFECHIEKCISAIQEDTD 76 (291)
T ss_pred eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhh---hcCcchhh---hHHHHhchHHHHHHHHHHHHhcccC
Confidence 6889999999999999998755444433221 233355531 11111111 111112222334444443222 1
Q ss_pred H------------HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE--EEEEEEeCCHHHHHHHH
Q 004941 398 W------------MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI--IFLETICNDRDIIERNI 448 (722)
Q Consensus 398 ~------------l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~v--iflE~~c~d~~~i~~ri 448 (722)
| .+.+-.+.++|..|..+..|..+.++ ..+|+.+ +|+-+ .-.+.+++|-
T Consensus 77 wppqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas--~ide~LqaNS 140 (291)
T KOG4622|consen 77 WPPQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLAS--GIDEALQANS 140 (291)
T ss_pred CCchheeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhh--hHHHHHHhcc
Confidence 2 11224588899999999999999999 6677654 44443 3345666653
No 222
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=96.87 E-value=0.016 Score=60.91 Aligned_cols=38 Identities=21% Similarity=0.048 Sum_probs=30.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 363 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~ 363 (722)
++|-++|-+||||||+|+.|.+.++.. ++|.|..-+..
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~-----viDaD~iar~l 39 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIE-----VIDADLVVREL 39 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCe-----EEehHHHHHHH
Confidence 479999999999999999999876555 67777664433
No 223
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.86 E-value=0.0044 Score=67.84 Aligned_cols=42 Identities=26% Similarity=0.280 Sum_probs=37.0
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
..++.+|.++|.||+||||+...|...+...+.++-+++.|.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 346889999999999999999999999998888888887653
No 224
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.86 E-value=0.0041 Score=72.25 Aligned_cols=148 Identities=10% Similarity=0.137 Sum_probs=76.9
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHH---
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAME--- 393 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~--- 393 (722)
..++++|.+.|.+||||||+|+.|+..+. .+-+++.|+|....... ...|+....--+..+.+....+.+
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp----~vgvIsmDdy~~~~~~i---~~nfD~P~a~D~d~L~enL~~Lr~Gks 134 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVISMDNYNDSSRII---DGNFDDPRLTDYDTLLDNIHDLKAGKS 134 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhCC----CcEEEEEcceecchhhh---CccCCChhhcchhHHHHHHHHHhCCCc
Confidence 34678999999999999999999998763 34577788774321111 111211110001111111111111
Q ss_pred ---HHHHHH-----------hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCC
Q 004941 394 ---DMISWM-----------HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYA 459 (722)
Q Consensus 394 ---d~~~~l-----------~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~ 459 (722)
-.++|- .....+||+++...-. ..++.+.. -.+||+ ++.+..+.+||.++...+
T Consensus 135 V~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~---~~Lr~LlD---lkIFVD--tdvDirL~RRI~RD~~eR---- 202 (656)
T PLN02318 135 VQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALS---EKLRPLLD---LRVSVT--GGVHFDLVKRVLRDIQRA---- 202 (656)
T ss_pred eecCccccccCcccCCceeecCCCcEEEEechhhcc---HhHHhhCC---EEEEEc--CCccHHHHHHHHHHHHHh----
Confidence 001111 0124467777766642 33444432 235666 343445667887765432
Q ss_pred CCCChHHHHHHHHHH-HHhhhccccc
Q 004941 460 EEPDFEAGLQDFKNR-LANYEKVYEP 484 (722)
Q Consensus 460 ~~~d~e~a~~df~~R-i~~y~~~yEp 484 (722)
+. +.+.+++.|.+. .+.|+..-||
T Consensus 203 Gr-s~EsVi~q~~~~VkP~y~~FIeP 227 (656)
T PLN02318 203 GQ-EPEEIIHQISETVYPMYKAFIEP 227 (656)
T ss_pred CC-CHHHHHHHHHHhhcchHHHHhCc
Confidence 33 567777777554 4666655565
No 225
>PRK05439 pantothenate kinase; Provisional
Probab=96.86 E-value=0.0015 Score=70.83 Aligned_cols=43 Identities=21% Similarity=0.182 Sum_probs=37.7
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhh--cCCceEEEechhh
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 359 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~--~g~~t~v~~~ddy 359 (722)
...|++|-+.|-|||||||+|+.|+..|.. .+.++.++..|+|
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 457899999999999999999999998864 3678889999887
No 226
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.85 E-value=0.0017 Score=72.21 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=31.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
.|.+|+++|++|||||||+.+|.+.|... +++-++
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~i 38 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYY 38 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEE
Confidence 58899999999999999999999999866 666666
No 227
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.79 E-value=0.0029 Score=57.48 Aligned_cols=37 Identities=32% Similarity=0.309 Sum_probs=29.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
..++++|-||+||||+++.|+..+...+.....++.+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~ 39 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE 39 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence 4789999999999999999999987765445555553
No 228
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.78 E-value=0.008 Score=56.97 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=31.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+++++|-||+||||++..++..+...+..+.+++.+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 37889999999999999999988777778877776544
No 229
>PLN02422 dephospho-CoA kinase
Probab=96.74 E-value=0.017 Score=60.30 Aligned_cols=35 Identities=20% Similarity=0.106 Sum_probs=27.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 362 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~ 362 (722)
+|.++|-+||||||+++.|++ ++.. ++|.|++-+.
T Consensus 3 ~igltG~igsGKstv~~~l~~-~g~~-----~idaD~~~~~ 37 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFKS-SGIP-----VVDADKVARD 37 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCe-----EEehhHHHHH
Confidence 689999999999999999984 4444 6777766443
No 230
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=96.70 E-value=0.024 Score=60.46 Aligned_cols=106 Identities=16% Similarity=0.248 Sum_probs=56.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 401 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~~ 401 (722)
+||++||+|+||||..+.|+. +++. .+ |+. -. ..+.+++..+.+. --..
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED-~Gy~-----cv--DNl-----------------P~---~Ll~~l~~~~~~~---~~~~ 51 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALED-LGYY-----CV--DNL-----------------PP---SLLPQLIELLAQS---NSKI 51 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHh-cCee-----EE--cCC-----------------cH---HHHHHHHHHHHhc---CCCC
Confidence 799999999999999999974 3433 22 111 11 1122222222210 0001
Q ss_pred CCeEEEEeCCCCCH--HHHHHHHHHH--cCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCC
Q 004941 402 GGQVGIFDATNSSR--KRRNMLMKMA--EGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEE 461 (722)
Q Consensus 402 ~G~vVIvDAtn~~~--~~R~~~~~l~--~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~ 461 (722)
..-.+++|.-+..- ..-+.+.++. ...++++|+| |+++.+++|--+.| +.-|.-.+.
T Consensus 52 ~~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLd--A~d~~LirRy~eTR-R~HPL~~~~ 112 (284)
T PF03668_consen 52 EKVAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLD--ASDEVLIRRYSETR-RRHPLSSDG 112 (284)
T ss_pred ceEEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEE--CChHHHHHHHHhcc-CCCCCCCCC
Confidence 24577888887642 2234444453 3456777777 55555555544444 435655544
No 231
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=96.66 E-value=0.0039 Score=70.00 Aligned_cols=35 Identities=29% Similarity=0.254 Sum_probs=28.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 362 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~ 362 (722)
.|.++|.+||||||+|+.|++ ++.. ++|.|++-+.
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~~-----vidaD~i~~~ 37 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGAV-----VVDADVLARE 37 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCe-----EEehHHHHHH
Confidence 589999999999999999987 5555 7777776554
No 232
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.63 E-value=0.008 Score=56.71 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=37.2
Q ss_pred cCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 313 LGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 313 ~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
..+.+.+|+|+-+.|-||+|||++|+.||+.|...|.++..+
T Consensus 46 ~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V 87 (127)
T PF06309_consen 46 ANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFV 87 (127)
T ss_pred cCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCce
Confidence 344678999999999999999999999999998888888776
No 233
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.60 E-value=0.013 Score=65.79 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=36.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHH-hhcCCceEEEechhhHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYL-RWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L-~~~g~~t~v~~~ddyRr 361 (722)
++.+|+++|.+|+||||++.+|+..+ ...|.++-+++.|.||-
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 46789999999999999999999765 45678888999998866
No 234
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.013 Score=65.44 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=38.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
+|.+|.|+|.+|+||||++..|+..|...|.++-+++.|-||
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 467899999999999999999999998788888899998886
No 235
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.58 E-value=0.024 Score=60.50 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=28.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+|.++|-+||||||+++.|+..|...+ ..++..|+|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECccc
Confidence 477899999999999999998876442 446667766
No 236
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=96.57 E-value=0.018 Score=58.45 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=27.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 363 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~ 363 (722)
+|.++|-+||||||+++.|++. + ..+++.|+.-+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~-g-----~~~i~~D~i~~~~ 36 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL-G-----AFGISADRLAKRY 36 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC-C-----CEEEecchHHHHH
Confidence 5789999999999999999753 3 3467777664433
No 237
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.49 E-value=0.019 Score=59.40 Aligned_cols=116 Identities=16% Similarity=0.310 Sum_probs=70.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHH--------------H
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR--------------N 385 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~--------------~ 385 (722)
|+--+++|.|||||||.+....+.|...|.++.++|.|-- +....|-...+....-.. .
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPa-------Nd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l 74 (290)
T KOG1533|consen 2 PFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPA-------NDNLPYECAVDIRELITVEDVMEELGLGPNGAL 74 (290)
T ss_pred CcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCc-------ccCCCCCCcccHHHHccHHHHHHHhCCCCchhH
Confidence 3456889999999999999999999999999999987521 000011000011000000 1
Q ss_pred HHHHHHHHHHHHHHhc-----CCeEEEEeCCCC------CHHHHHHHHHHHcCCceEEEEEE----EeCCHH
Q 004941 386 EVAALAMEDMISWMHE-----GGQVGIFDATNS------SRKRRNMLMKMAEGNCKIIFLET----ICNDRD 442 (722)
Q Consensus 386 ~va~~~l~d~~~~l~~-----~G~vVIvDAtn~------~~~~R~~~~~l~~~~~~viflE~----~c~d~~ 442 (722)
..+.+.++.=++||.. .+.=+|+|...- .-.-+..++.+.+.+++++-+.. .|+++.
T Consensus 75 ~yc~E~l~~~idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~ 146 (290)
T KOG1533|consen 75 KYCMEYLEANIDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPS 146 (290)
T ss_pred HHHHHHHHhhhHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChH
Confidence 2233334444466542 366788887642 23456777778778888766654 676654
No 238
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.48 E-value=0.0081 Score=65.19 Aligned_cols=35 Identities=31% Similarity=0.328 Sum_probs=29.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
.+.+|+++|.+|||||++|..|++.++.. +++.|.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~-----iis~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGE-----IISADS 37 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCc-----EEeccc
Confidence 45799999999999999999999987644 565554
No 239
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.45 E-value=0.037 Score=56.76 Aligned_cols=39 Identities=21% Similarity=0.171 Sum_probs=33.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
...++.++|.||+|||++|.+++...-..+.++.+++.+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 466999999999999999999998776667888888775
No 240
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.019 Score=63.88 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=38.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
++.+|+++|..|+||||++..|+.++...+.++-+++.|-||-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 4678999999999999999999998877788899999998854
No 241
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.42 E-value=0.027 Score=61.17 Aligned_cols=91 Identities=22% Similarity=0.349 Sum_probs=63.7
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
..+|.+|+++|..|+||||...+||.+|...|.++.+--.|-+|. . +.++|.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA-----------------a-----------AiEQL~ 187 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA-----------------A-----------AIEQLE 187 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHH-----------------H-----------HHHHHH
Confidence 457999999999999999999999999999999988776666644 1 233333
Q ss_pred HHHhcCCeEEEEeCCCCCHHH--HHHHHHHHcCCceEEEEE
Q 004941 397 SWMHEGGQVGIFDATNSSRKR--RNMLMKMAEGNCKIIFLE 435 (722)
Q Consensus 397 ~~l~~~G~vVIvDAtn~~~~~--R~~~~~l~~~~~~viflE 435 (722)
.|-.+.|-.+|--..+..+.. -+.+......++.++++.
T Consensus 188 ~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliD 228 (340)
T COG0552 188 VWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLID 228 (340)
T ss_pred HHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 444446777776434444442 333444455688888877
No 242
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.40 E-value=0.028 Score=56.90 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=32.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
...++.++|.||||||++|.+++......+.++..++.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 45699999999999999999999887666777777754
No 243
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.38 E-value=0.026 Score=57.51 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=32.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
...+++++|-||+||||+|.+++..+...+.++-+++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 45689999999999999999999888777777777754
No 244
>PRK06893 DNA replication initiation factor; Validated
Probab=96.38 E-value=0.052 Score=56.26 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=30.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
.++++|-||+|||+|+++++..+...+.++.+++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 68999999999999999999998777777777765
No 245
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.36 E-value=0.076 Score=55.27 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=32.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
.++++|-||+|||||+++++..+...+.++..++.++
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 6899999999999999999998887777787777654
No 246
>PF13173 AAA_14: AAA domain
Probab=96.31 E-value=0.027 Score=52.70 Aligned_cols=84 Identities=17% Similarity=0.168 Sum_probs=53.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 400 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~ 400 (722)
.++++.|..++||||+++++++.+. ...+.-.+|.++.+.... ... ++....++ ...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~-----------------~~~-~~~~~~~~----~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRL-----------------ADP-DLLEYFLE----LIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHH-----------------hhh-hhHHHHHH----hhc
Confidence 4799999999999999999998876 233444566655533110 000 01111111 112
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHcC
Q 004941 401 EGGQVGIFDATNSSRKRRNMLMKMAEG 427 (722)
Q Consensus 401 ~~G~vVIvDAtn~~~~~R~~~~~l~~~ 427 (722)
++...+++|-....+.....++.+.+.
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~ 86 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDN 86 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHh
Confidence 256789999998888888888887443
No 247
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.30 E-value=0.015 Score=53.43 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=28.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
...++++|-||+||||+++.+++.+...+.....++.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 55 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA 55 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh
Confidence 3478899999999999999999988544455555544
No 248
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=96.28 E-value=0.0042 Score=63.52 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=30.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
.|+.|.++|-+||||||+++.|++.++.. ++|.|.+-+
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~-----vidaD~i~~ 42 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLN-----VVCADTISR 42 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCe-----EEeccHHHH
Confidence 47899999999999999999999877655 566655544
No 249
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.28 E-value=0.071 Score=61.10 Aligned_cols=151 Identities=20% Similarity=0.195 Sum_probs=71.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceE-EE-echhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK-HF-NVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 397 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~-v~-~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~ 397 (722)
+-.++|+|-||+||||+|+.|++.|+....... .. .....+....+...+-..++.....++....++...+.. .
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~---~ 116 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKF---A 116 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHh---h
Confidence 457899999999999999999999874311110 00 001122322222221111111111112222222111110 0
Q ss_pred HHhcCCeEEEEeCCCC-CHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 004941 398 WMHEGGQVGIFDATNS-SRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 475 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~-~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri 475 (722)
-......++|+|-... +.+.-+.+... .+....++|| ..|+....+...|..|-. .=++... +.+ .+..+.+++
T Consensus 117 p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFI-LaTte~~kI~~TI~SRCq-~~~f~~l-s~~-~i~~~L~~i 192 (484)
T PRK14956 117 PMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFI-LATTEFHKIPETILSRCQ-DFIFKKV-PLS-VLQDYSEKL 192 (484)
T ss_pred hhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEE-eecCChhhccHHHHhhhh-eeeecCC-CHH-HHHHHHHHH
Confidence 0112346999998765 34444444333 4434456666 345566666666766632 2344444 333 344555555
Q ss_pred Hh
Q 004941 476 AN 477 (722)
Q Consensus 476 ~~ 477 (722)
..
T Consensus 193 ~~ 194 (484)
T PRK14956 193 CK 194 (484)
T ss_pred HH
Confidence 43
No 250
>CHL00181 cbbX CbbX; Provisional
Probab=96.26 E-value=0.11 Score=55.77 Aligned_cols=31 Identities=35% Similarity=0.440 Sum_probs=26.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCC
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGH 349 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~ 349 (722)
.+.-+++.|-||+||||+|+.+++.+...|+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3556899999999999999999998875544
No 251
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.25 E-value=0.015 Score=50.48 Aligned_cols=54 Identities=22% Similarity=0.481 Sum_probs=45.1
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEe
Q 004941 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLK 96 (722)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~ 96 (722)
.|+|++.||. ...+.|+|+-. +|+ .++|++...+.|++++.+++. ..+|||++-
T Consensus 3 ~vtf~~~ap~---a~~V~v~G~fn---~W~---~~~m~~~~~G~w~~~~~l~~G--~y~Ykf~vd 56 (82)
T cd02861 3 PVVFAYRGPE---ADSVYLAGSFN---NWN---AIPMEREGDGLWVVTVELRPG--RYEYKFVVD 56 (82)
T ss_pred cEEEEEECCC---CCEEEEEeECC---CCC---cccCEECCCCcEEEEEeCCCC--cEEEEEEEC
Confidence 5899999994 37899998755 787 689999888999999998874 479999984
No 252
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.19 E-value=0.065 Score=63.42 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=25.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
-+-.++|+|-||+||||+|+.||+.|+.
T Consensus 36 l~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 36 LHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568999999999999999999999875
No 253
>PLN02796 D-glycerate 3-kinase
Probab=96.18 E-value=0.0059 Score=66.94 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=35.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.+|++|.++|.+||||||+++.|...+...+.++-.+..|++
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 478999999999999999999999998766666666766655
No 254
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.045 Score=53.78 Aligned_cols=110 Identities=25% Similarity=0.292 Sum_probs=60.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh--hc-----CC-C------CCCCCCCC-CH--HHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK--HG-----VN-Q------SADFFRAD-NP--EGME 382 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~--~g-----~~-~------~~~~~~~~-~~--~~~~ 382 (722)
++=|.++|.||+||||++.+|+.+|...|++.-=|=.-+.|+-- .| +. . ..++.... .. -..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~ 84 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVE 84 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHH
Confidence 45689999999999999999999998776555433333333310 00 00 0 01111100 00 0022
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCCCC----CHHHHHHHHHHHcCCceEEE
Q 004941 383 ARNEVAALAMEDMISWMHEGGQVGIFDATNS----SRKRRNMLMKMAEGNCKIIF 433 (722)
Q Consensus 383 ~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~----~~~~R~~~~~l~~~~~~vif 433 (722)
.+++++..+++..+ +.-.++|+|-..+ .+..++.+.+..+.+-++++
T Consensus 85 ~le~i~~~al~rA~----~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kplia 135 (179)
T COG1618 85 GLEEIAIPALRRAL----EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIA 135 (179)
T ss_pred HHHHHhHHHHHHHh----hcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEE
Confidence 23333333333111 1358999999875 45677777777665655433
No 255
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.16 E-value=0.066 Score=55.33 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=32.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEech
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVG 357 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~-g~~t~v~~~d 357 (722)
+.-++++.|-||+|||+++.+++..+... +.++-+|+.+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 34689999999999999999998777655 8888888764
No 256
>PLN02840 tRNA dimethylallyltransferase
Probab=96.16 E-value=0.01 Score=66.73 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=26.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
..+.+|+++|.+||||||+|..|++.++..
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~ 48 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGE 48 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCC
Confidence 456689999999999999999999998754
No 257
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.15 E-value=0.0069 Score=65.15 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=34.5
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhc--CCceEEEechhh
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 359 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~--g~~t~v~~~ddy 359 (722)
...|.+|-+.|-+||||||+|+.|+..+... +..+.++..|+|
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f 103 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF 103 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence 4578999999999999999999999888632 345667777754
No 258
>PRK08727 hypothetical protein; Validated
Probab=96.08 E-value=0.073 Score=55.37 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=31.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
.|+++|-+|+|||+++++++..+...+.++..++..+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 4999999999999999999999887788887776543
No 259
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.04 E-value=0.02 Score=55.69 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=18.1
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 004941 323 IVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~ 343 (722)
|+++|-||+|||||++.|+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999988
No 260
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.03 E-value=0.008 Score=64.40 Aligned_cols=42 Identities=33% Similarity=0.362 Sum_probs=36.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc-C-CceEEEechhhH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-G-HDTKHFNVGKYR 360 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~-g-~~t~v~~~ddyR 360 (722)
++.+|+|+|.+|+||||++..|+.++... | .++-+++.|.||
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 56799999999999999999999998765 4 788899888875
No 261
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.03 E-value=0.008 Score=67.33 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=36.0
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
..+|++|-+.|.+||||||+++.|...+...+.++-++..|+|
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf 251 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDF 251 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence 3479999999999999999999998887666667777777666
No 262
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.01 E-value=0.06 Score=56.83 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=25.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 348 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g 348 (722)
...-+++.|-||+||||+|+.+++.+...+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 345688999999999999999999886443
No 263
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.98 E-value=0.011 Score=58.78 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
+|+++|-|||||||+|..|+..++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 689999999999999999998864
No 264
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.12 Score=58.16 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=25.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
-+-.++|+|.||+||||+|+.+++.|...
T Consensus 37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 37 VGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 45579999999999999999999999753
No 265
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.95 E-value=0.022 Score=58.95 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
=++|.|.||.||||||+.||+.++.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~ 76 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGV 76 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT-
T ss_pred eEEEECCCccchhHHHHHHHhccCC
Confidence 4899999999999999999998653
No 266
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.94 E-value=0.0068 Score=63.39 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=27.1
Q ss_pred EEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 325 LVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 325 lvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
++|.|||||||+++.+.+++...+.++.++|.|
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 479999999999999999999999999999986
No 267
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.083 Score=64.35 Aligned_cols=29 Identities=28% Similarity=0.232 Sum_probs=25.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
-+-.++|+|-||+||||+|+.|++.|+..
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 35578999999999999999999998753
No 268
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.091 Score=62.11 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=25.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
-+-.++|+|-+|+||||+|+.|++.|..
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3557899999999999999999999975
No 269
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.90 E-value=0.056 Score=64.73 Aligned_cols=141 Identities=14% Similarity=0.126 Sum_probs=68.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcC-CceEE-EechhhHHHhhcCCCCCCCCC--CCCHHHHHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKH-FNVGKYRRLKHGVNQSADFFR--ADNPEGMEARNEVAALAMED 394 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g-~~t~v-~~~ddyRr~~~g~~~~~~~~~--~~~~~~~~~~~~va~~~l~d 394 (722)
-+-.++|+|-+|+||||+|+.|++.|+... ....- -.....|++..+... +++. .......+.+.++...
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~--DviEIDAas~rgVDdIReLIe~---- 110 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFV--DYVEMDAASNRGVDEMAALLER---- 110 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCc--eEEEecccccccHHHHHHHHHH----
Confidence 355788999999999999999999987531 11000 000112332222211 1211 1111122222222221
Q ss_pred HHHH-HhcCCeEEEEeCCCC-CHHH-HHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 004941 395 MISW-MHEGGQVGIFDATNS-SRKR-RNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGL 468 (722)
Q Consensus 395 ~~~~-l~~~G~vVIvDAtn~-~~~~-R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~ 468 (722)
+... ......++|||-... +... ..+++.+.+..-.++||= .|++...|-.-|..|-. .-+|+.. ..++..
T Consensus 111 a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FIL-aTtd~~KIp~TIrSRCq-~f~Fk~L-s~eeIv 184 (830)
T PRK07003 111 AVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFIL-ATTDPQKIPVTVLSRCL-QFNLKQM-PAGHIV 184 (830)
T ss_pred HHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEE-EECChhhccchhhhheE-EEecCCc-CHHHHH
Confidence 1111 112367999998765 3333 344444444322344543 45666655556665532 3445544 444443
No 270
>PRK12377 putative replication protein; Provisional
Probab=95.88 E-value=0.05 Score=57.33 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=35.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
.-++|.|-||+|||+||.+|+..+...|..+.+++..+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 46899999999999999999999988888888887755533
No 271
>PRK04296 thymidine kinase; Provisional
Probab=95.88 E-value=0.034 Score=56.01 Aligned_cols=35 Identities=14% Similarity=0.050 Sum_probs=30.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 355 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~ 355 (722)
.+++++|-||+||||++..++.++...+.++.++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 58899999999999999999988877788888774
No 272
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.86 E-value=0.012 Score=54.72 Aligned_cols=36 Identities=33% Similarity=0.381 Sum_probs=32.4
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
|+++|.+|+||||++..|++++...+.++.++|.|-
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 789999999999999999999988888888888753
No 273
>PLN02772 guanylate kinase
Probab=95.78 E-value=0.11 Score=57.96 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=23.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
...+|+++|.+|+||+||.++|.+.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 45689999999999999999998765
No 274
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.078 Score=59.07 Aligned_cols=42 Identities=31% Similarity=0.369 Sum_probs=34.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh-hcC-CceEEEechhhH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLG-HDTKHFNVGKYR 360 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~-~~g-~~t~v~~~ddyR 360 (722)
++-+|+|+|.+|+||||++.+|+.++. ..| .++-++..|.||
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 456899999999999999999998764 334 467788888885
No 275
>PLN03025 replication factor C subunit; Provisional
Probab=95.74 E-value=0.087 Score=57.28 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.6
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
++++|-||+||||+|+.+++.+..
T Consensus 37 lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 678999999999999999998743
No 276
>PRK13768 GTPase; Provisional
Probab=95.74 E-value=0.013 Score=61.75 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=35.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
+.+|++.|.+|+||||++..++..+...|.++-++|.|-
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 468999999999999999999999988899999988753
No 277
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.16 Score=57.05 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=37.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh----cCCceEEEechhhHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRW----LGHDTKHFNVGKYRR 361 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~----~g~~t~v~~~ddyRr 361 (722)
.+|.+|+++|..|+||||++..||.++.. .+.++-+++.|-||-
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 35779999999999999999999988763 467888999998864
No 278
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.73 E-value=0.014 Score=58.08 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=30.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
.+.+|.++|.+|||||||++.|.+.|...|.++-++
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~I 40 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEE
Confidence 455899999999999999999999998777666555
No 279
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.73 E-value=0.056 Score=58.00 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=25.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCC
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGH 349 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~ 349 (722)
.-+++.|-||+||||+|+.+++.+...|.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 35899999999999999999999876654
No 280
>PRK08116 hypothetical protein; Validated
Probab=95.72 E-value=0.067 Score=56.99 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=34.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
..-++|.|-||+|||+||.+++.+|...+..+.+++..+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~l 153 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQL 153 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3458999999999999999999999877888888877554
No 281
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.72 E-value=0.097 Score=51.53 Aligned_cols=36 Identities=22% Similarity=0.121 Sum_probs=30.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
++++.|-||+|||++|.+++...-..|.++-+++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 378899999999999999988766678888888763
No 282
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.72 E-value=0.013 Score=61.79 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=37.7
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
.++|.+|+.+|+-||||||+.++|..+|....-+.+++|.|
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLD 56 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLD 56 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCC
Confidence 46788999999999999999999999999888888999986
No 283
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=95.70 E-value=0.19 Score=60.23 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=30.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh-hHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRR 361 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd-yRr 361 (722)
..+|.+.|.+||||||+|+.|+++|++. ++|.|+ ||.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~-----~~~~~~~~~~ 479 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYH-----YLDSGALYRL 479 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCe-----EecHHHhhhH
Confidence 4478889999999999999999999887 566544 444
No 284
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.69 E-value=0.083 Score=55.68 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=35.0
Q ss_pred ccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEech
Q 004941 310 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVG 357 (722)
Q Consensus 310 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~-g~~t~v~~~d 357 (722)
+.+++... ..-++++.|-||+||||++.+++..+... |.++-+++..
T Consensus 21 d~~~gG~~-~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 21 NKLTKGLR-KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred eeeeEEEc-CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 34444333 33488899999999999999999877555 7888888763
No 285
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.67 E-value=0.024 Score=52.46 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=26.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc-----CCceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-----GHDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~-----g~~t~v~~~ 356 (722)
++.+++++|-||+|||++++.+++.+... ..++..++.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNC 45 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEe
Confidence 45689999999999999999999988643 444545544
No 286
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.67 E-value=0.014 Score=50.18 Aligned_cols=34 Identities=32% Similarity=0.303 Sum_probs=30.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 355 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~ 355 (722)
+++++|.+|+||||++..|+..|...|.++-+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4788899999999999999999988888887775
No 287
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=95.66 E-value=0.23 Score=52.36 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEEccCCCChHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~ 342 (722)
+||++|++|+|||+-.+.|+.
T Consensus 3 lvIVTGlSGAGKsvAl~~lED 23 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLED 23 (286)
T ss_pred EEEEecCCCCcHHHHHHHHHh
Confidence 789999999999998888874
No 288
>PLN02748 tRNA dimethylallyltransferase
Probab=95.63 E-value=0.023 Score=64.98 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=51.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh---hHHHhhcCCCC------------CCCCCCCCHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK---YRRLKHGVNQS------------ADFFRADNPEGME 382 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd---yRr~~~g~~~~------------~~~~~~~~~~~~~ 382 (722)
..+.+|+++|-+|||||+||..|++.++. .+++.|. ||.+-.+..+. .++.+...+-...
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~-----eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~ 94 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPV-----EIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAK 94 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCe-----eEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHH
Confidence 45668999999999999999999998763 4666663 44332222111 1233333222334
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 004941 383 ARNEVAALAMEDMISWMHEGGQVGIFDATNS 413 (722)
Q Consensus 383 ~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~ 413 (722)
...+.|..+++++ +..+...+|+-.|+.
T Consensus 95 ~F~~~A~~~I~~I---~~rgk~PIlVGGTgl 122 (468)
T PLN02748 95 DFRDHAVPLIEEI---LSRNGLPVIVGGTNY 122 (468)
T ss_pred HHHHHHHHHHHHH---HhcCCCeEEEcChHH
Confidence 4445555555533 234455677766664
No 289
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.013 Score=63.07 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=24.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
...+|++.|.||+|||+|+++||++|.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 456899999999999999999999985
No 290
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.60 E-value=0.014 Score=57.10 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=30.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 355 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~ 355 (722)
+|.++|.+||||||++.+|.+.|...|.++-++.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4789999999999999999999988888888773
No 291
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=95.60 E-value=0.38 Score=51.06 Aligned_cols=39 Identities=26% Similarity=0.232 Sum_probs=32.0
Q ss_pred ccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 004941 310 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG 348 (722)
Q Consensus 310 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g 348 (722)
|..+.+.++...||++-|--|+|||++|++||+.|+...
T Consensus 61 Dktskrf~enSkvI~VeGnI~sGK~klAKelAe~Lgf~h 99 (393)
T KOG3877|consen 61 DKTSKRFHENSKVIVVEGNIGSGKTKLAKELAEQLGFVH 99 (393)
T ss_pred chhhhhhcccceEEEEeCCcccCchhHHHHHHHHhCCcc
Confidence 444444566788999999999999999999999998553
No 292
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.59 E-value=0.11 Score=60.25 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=24.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
+-.++|+|-||+||||+|+.|++.|+.
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 457999999999999999999999864
No 293
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=95.58 E-value=0.025 Score=60.71 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCC-------CCCEEEEcChHHHHHHHHHh
Q 004941 551 TILSDAGEIYAKKLANFVEKRLKSE-------RAASIWTSTLQRTILTASPI 595 (722)
Q Consensus 551 ~pLTe~G~~QA~~L~~~L~~~l~~~-------~~~~V~sSpl~RaiQTA~~i 595 (722)
..||+.|.+|...+|+++++++... ..-.|++|...||++||+.+
T Consensus 61 g~LT~~G~~q~~~lG~~lr~~Y~~l~~~~~~~~~v~vrSt~~~Rt~~Sa~af 112 (347)
T PF00328_consen 61 GQLTPRGMEQHYQLGKRLRERYPGLFPDNYNPEQVYVRSTNKQRTIQSAQAF 112 (347)
T ss_dssp TSBTHHHHHHHHHHHHHHHHHHHTSSTSSS-TTTEEEEEESSHHHHHHHHHH
T ss_pred CcccchhhhHHHHHHHHHHHHHHHhccccccccceeEEEeccchHHHHHHHH
Confidence 3499999999999999999886532 23468999999999999988
No 294
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.56 E-value=0.018 Score=62.26 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=36.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
..+.+|.++|.||+||||+...|+..+...|.++.+++.|..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 356788889999999999999999999888889988877643
No 295
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.56 E-value=0.14 Score=56.91 Aligned_cols=27 Identities=37% Similarity=0.358 Sum_probs=24.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
-+-.++++|-||+||||+|+.+++.+.
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 355789999999999999999999986
No 296
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.53 E-value=0.012 Score=65.02 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=26.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
.++.+++|+|-||+||||+|++|++.|+.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35678999999999999999999999865
No 297
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=95.52 E-value=0.02 Score=61.48 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=26.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
+|+++|.+|||||++|..|++.++.. +++.|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~-----iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAE-----IISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCc-----EEEech
Confidence 58999999999999999999987643 555543
No 298
>PRK13695 putative NTPase; Provisional
Probab=95.52 E-value=0.13 Score=50.68 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHD 350 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~ 350 (722)
-|+++|.||+||||+++.|+..+...|..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~ 30 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYK 30 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 48899999999999999998887644544
No 299
>PRK05973 replicative DNA helicase; Provisional
Probab=95.48 E-value=0.026 Score=59.07 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=32.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
+.-++++.|-||+|||++|-+++...-..|.++.+|+..
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 345899999999999999999998776668888787764
No 300
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.47 E-value=0.21 Score=59.13 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=24.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
+-.++|+|-||+||||+|+.|++.|..
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccc
Confidence 347999999999999999999999864
No 301
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.47 E-value=0.13 Score=58.52 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=36.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh--hcCCceEEEechhhHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRR 361 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~--~~g~~t~v~~~ddyRr 361 (722)
+.+|+++|.+|+||||++..|+.++. ..+.++-+++.|.||-
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~ 264 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI 264 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence 34899999999999999999998886 4568899999999874
No 302
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.45 E-value=0.06 Score=56.63 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=33.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.++|.|-||+|||+||.+|+.+|...+..+.+++..+.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 68999999999999999999999888888888877554
No 303
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.41 E-value=0.2 Score=59.81 Aligned_cols=29 Identities=34% Similarity=0.316 Sum_probs=25.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
-+-.++|+|-+|+||||+|+.|++.|...
T Consensus 37 l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 37 LHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 35689999999999999999999998643
No 304
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.40 E-value=0.28 Score=46.09 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
...|+++|.||+||||+...|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998643
No 305
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.33 E-value=0.022 Score=53.70 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=21.5
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~ 345 (722)
|+|+|-||+|||++|+.|++.++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999999983
No 306
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.32 E-value=0.031 Score=55.51 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=34.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~-~~g~~t~v~~~ddy 359 (722)
...++|+|.+|+|||.+|++|++.|. ....+...+|+.+|
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence 45789999999999999999999988 45567778888777
No 307
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.32 E-value=0.11 Score=54.51 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=63.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEechhhHHH-----h---hcCCCCCCCCC-CCCHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYRRL-----K---HGVNQSADFFR-ADNPEGMEARNEVA 388 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~-g~~t~v~~~ddyRr~-----~---~g~~~~~~~~~-~~~~~~~~~~~~va 388 (722)
+.-|+++.|.||.|||++|..++..+... +.++.+|+...-.+. . .+.... .+.. ....+.++.+.+.+
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~-~i~~g~l~~~e~~~~~~~~ 96 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYN-KIRSGDLSDEEFERLQAAA 96 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHH-HHHCCGCHHHHHHHHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhh-hhhccccCHHHHHHHHHHH
Confidence 34589999999999999999999988765 588988987422111 1 111110 0111 11223333333222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHHH-HHHHHHH-Hc-CCceEEEEE
Q 004941 389 ALAMEDMISWMHEGGQVGIFDATNSSRKR-RNMLMKM-AE-GNCKIIFLE 435 (722)
Q Consensus 389 ~~~l~d~~~~l~~~G~vVIvDAtn~~~~~-R~~~~~l-~~-~~~~viflE 435 (722)
. .+. .....|.|....+.+. +..++.+ .+ .++.++||+
T Consensus 97 ~--------~l~-~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~ID 137 (259)
T PF03796_consen 97 E--------KLS-DLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFID 137 (259)
T ss_dssp H--------HHH-TSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred H--------HHh-hCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEec
Confidence 2 232 3567888877766654 6666666 44 788888887
No 308
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.31 E-value=0.27 Score=55.57 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
-++|+|-||+||||+|+.|++.++
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 577899999999999999998865
No 309
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.31 E-value=0.034 Score=55.28 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=27.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhh----------cCCceEEEech
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRW----------LGHDTKHFNVG 357 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~----------~g~~t~v~~~d 357 (722)
-+.+++|-||+||||++..|+..+-. .+.++-+++.+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E 79 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLE 79 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEecc
Confidence 48999999999999999999987742 33456666654
No 310
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.067 Score=59.07 Aligned_cols=90 Identities=22% Similarity=0.242 Sum_probs=53.5
Q ss_pred ccccccccccCCCCccccchhhhhhhccccCCCCCccE-EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH
Q 004941 284 IDLKLDTETKNSMPAAAGAVAAAAVADQMLGPKEHRHL-AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 362 (722)
Q Consensus 284 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~ 362 (722)
+||.++..+++-+.|+ +--+-...+.+-. -.+|+ -|+|+|.||+|||-||++++-..+ +.+||+..- .
T Consensus 212 ~DIagl~~AK~lL~EA---VvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~-----tTFFNVSss--t 280 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEA---VVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECG-----TTFFNVSSS--T 280 (491)
T ss_pred HhhcchHHHHHHHHHH---HhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhc-----CeEEEechh--h
Confidence 5677776666655542 2222222222211 12344 689999999999999999998765 557765211 0
Q ss_pred hhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 004941 363 KHGVNQSADFFRADNPEGMEARNEVAAL 390 (722)
Q Consensus 363 ~~g~~~~~~~~~~~~~~~~~~~~~va~~ 390 (722)
+ ..=++.+.++.++.+.++|+.
T Consensus 281 l------tSKwRGeSEKlvRlLFemARf 302 (491)
T KOG0738|consen 281 L------TSKWRGESEKLVRLLFEMARF 302 (491)
T ss_pred h------hhhhccchHHHHHHHHHHHHH
Confidence 0 011344567667777777764
No 311
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.30 E-value=0.025 Score=55.62 Aligned_cols=34 Identities=29% Similarity=0.232 Sum_probs=30.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
.+|.++|.+||||||++..|.+.|...|.++-++
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~i 35 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVI 35 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 3799999999999999999999998888877666
No 312
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.29 E-value=0.04 Score=57.04 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=25.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
.|..++++|.||+||||+|+.|+ .++.+++.|.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~ 43 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDM 43 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC-------CCCEEEeccc
Confidence 36679999999999999999885 2344665544
No 313
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.29 E-value=0.11 Score=59.61 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
-|-.++|+|.||+||||+|+.+++.+..
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3456899999999999999999999864
No 314
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.24 E-value=0.065 Score=59.35 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=31.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
..|..+.|.|.||+|||.+|+++++.++ .....++.++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg---~~~i~vsa~eL 184 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG---IEPIVMSAGEL 184 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC---CCeEEEEHHHh
Confidence 5688999999999999999999999865 44556666444
No 315
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.23 E-value=0.026 Score=57.50 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=33.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.+..|+++|-||+||||+|+.+++++...+.....++..++
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 34579999999999999999999998766667767765433
No 316
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=95.22 E-value=0.057 Score=46.68 Aligned_cols=53 Identities=17% Similarity=0.444 Sum_probs=42.8
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEEe
Q 004941 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLK 96 (722)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~ 96 (722)
-|+|+..+ ..+.+.|+|+=. +|++ .++|...... |.+.+++|+. ..+|||++-
T Consensus 3 ~v~f~~~~----~a~~V~v~G~F~---~W~~--~~pm~~~~~~-~~~~~~L~~g--~y~YkF~Vd 55 (79)
T cd02859 3 PTTFVWPG----GGKEVYVTGSFD---NWKK--KIPLEKSGKG-FSATLRLPPG--KYQYKFIVD 55 (79)
T ss_pred EEEEEEcC----CCcEEEEEEEcC---CCCc--cccceECCCC-cEEEEEcCCC--CEEEEEEEC
Confidence 36666666 568999999875 7987 6999998766 9999999884 579999983
No 317
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.21 E-value=0.17 Score=60.23 Aligned_cols=28 Identities=32% Similarity=0.300 Sum_probs=24.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
-+-.++|+|-+|+||||+|+.|++.|+.
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3456899999999999999999999875
No 318
>PRK08181 transposase; Validated
Probab=95.20 E-value=0.081 Score=56.43 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=33.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.-++|+|-||+|||+||.+|+..+...|.++..++..+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L 145 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDL 145 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHH
Confidence 359999999999999999999998878888887766444
No 319
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.19 E-value=0.023 Score=55.03 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=32.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
+|.++|.+|+||||++..|+..+...+.+..+++.|-
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 3778899999999999999999988888888887763
No 320
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.18 E-value=0.018 Score=54.95 Aligned_cols=29 Identities=24% Similarity=0.106 Sum_probs=25.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
...+|+|.|-+|+||||+++.|++.|+..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34589999999999999999999998754
No 321
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.15 E-value=0.18 Score=51.06 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
+|+++|-+||||||+.+.|.+++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 7899999999999999999988764
No 322
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.15 E-value=0.026 Score=56.34 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=33.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
+.-++|.|-||+|||++|.+++..+-..|..+..++..+.-.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~ 88 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLD 88 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceec
Confidence 446999999999999999999999988999999998865533
No 323
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=95.15 E-value=0.23 Score=48.88 Aligned_cols=27 Identities=22% Similarity=0.114 Sum_probs=23.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
..+|+++|.+|+||-||-......|..
T Consensus 5 G~lI~vvGPSGAGKDtl~~~ar~~l~~ 31 (192)
T COG3709 5 GRLIAVVGPSGAGKDTLLDAARARLAG 31 (192)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHhcc
Confidence 468999999999999999888877753
No 324
>PRK05642 DNA replication initiation factor; Validated
Probab=95.14 E-value=0.21 Score=51.99 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=32.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
-.++++|-+|+|||+|+++++.++...+.++..++.+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 357899999999999999999887766788888877554
No 325
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=95.12 E-value=0.19 Score=53.39 Aligned_cols=112 Identities=16% Similarity=0.230 Sum_probs=68.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNP-EGMEARNEVAALAMEDMI 396 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~-~~~~~~~~va~~~l~d~~ 396 (722)
..|+|||+-|.-||||..+-+.|.+.|.-.|+++.-|.. +..+ ...-.+...-+.
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~------------------Pt~eE~~~p~lWRfw~~------ 109 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKA------------------PSAEELDHDFLWRIHKA------ 109 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCC------------------CCHHHHcCchHHHHHHh------
Confidence 469999999999999999999999887766665554421 1111 111111122221
Q ss_pred HHHhcCCeEEEEeCCCCCHHH-------------HHHHHH-------HHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCC
Q 004941 397 SWMHEGGQVGIFDATNSSRKR-------------RNMLMK-------MAEGNCKIIFLETICNDRDIIERNIRLKIQQSP 456 (722)
Q Consensus 397 ~~l~~~G~vVIvDAtn~~~~~-------------R~~~~~-------l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~p 456 (722)
|=..|+++|+|-......- +..+.+ |...|+.++=+-... +.+..++|++.+.. +|
T Consensus 110 --lP~~G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhI-sk~eQ~kRl~~r~~-~p 185 (264)
T TIGR03709 110 --LPERGEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHI-SKEEQKKRFLARLD-DP 185 (264)
T ss_pred --CCCCCeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeC-CHHHHHHHHHHHhc-CC
Confidence 2246999999988765421 222221 256676554333333 57889999988864 45
Q ss_pred C
Q 004941 457 D 457 (722)
Q Consensus 457 d 457 (722)
+
T Consensus 186 ~ 186 (264)
T TIGR03709 186 T 186 (264)
T ss_pred c
Confidence 3
No 326
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.12 E-value=0.21 Score=52.81 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=31.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
+..+++++|-||+|||++|.+++...-..|.++-+++..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 456899999999999999999987655557777777653
No 327
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.12 E-value=0.068 Score=60.15 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=25.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
-...|+++|-+|||||||+++|+++++..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 34579999999999999999999987644
No 328
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.11 E-value=0.14 Score=53.92 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=24.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
....+|.++|++|.||||||+++++...
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~ 44 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLR 44 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccc
Confidence 4567999999999999999999997743
No 329
>PRK06921 hypothetical protein; Provisional
Probab=95.10 E-value=0.2 Score=53.34 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=30.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEec
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV 356 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~-g~~t~v~~~ 356 (722)
.--++|.|-||+|||+||.+|+..+... ++.+..+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3468999999999999999999998766 777776654
No 330
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.09 E-value=0.27 Score=52.53 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=35.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
+-.|+++|.+|+||||+++.|+..+...+.+.-+++.|.+|
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 35899999999999999999999887667788888888776
No 331
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=95.08 E-value=0.22 Score=52.34 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=64.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcC---CCC-CCCCCCCCHHHHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGV---NQS-ADFFRADNPEGMEARNEVAALAMEDM 395 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~---~~~-~~~~~~~~~~~~~~~~~va~~~l~d~ 395 (722)
++.+++.|--|+||||+|..|+.++...|.++-++|.|--.....+. ... ..+.. ..+ +-....+++
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~~~l~~~~~~i~~-~~~--------i~~r~fD~L 73 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGYKALNVRRLNIMD-GDE--------INTRNFDAL 73 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhHHhcCCcceeccc-CCc--------cchhhHHHH
Confidence 56777889999999999999999998889999999887332111111 111 11111 111 111123444
Q ss_pred HHHHhcCCeEEEEeCCCCCHHH-HH-----HHHHH-HcCCceEEEEEEEe
Q 004941 396 ISWMHEGGQVGIFDATNSSRKR-RN-----MLMKM-AEGNCKIIFLETIC 438 (722)
Q Consensus 396 ~~~l~~~G~vVIvDAtn~~~~~-R~-----~~~~l-~~~~~~viflE~~c 438 (722)
++.+...+..+|+|.+...-.- .+ .+.++ .+.|..+++.-++.
T Consensus 74 ve~i~~~~~dvIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~ 123 (241)
T PRK13886 74 VEMIASTEGDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVT 123 (241)
T ss_pred HHHHhccCCCEEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEEC
Confidence 4455445667888877644332 22 22334 66788877776554
No 332
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.05 E-value=0.26 Score=58.02 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
.+-.++++|.||+||||+|+.+++.|..
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3457999999999999999999999863
No 333
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.04 E-value=0.1 Score=60.35 Aligned_cols=41 Identities=32% Similarity=0.272 Sum_probs=34.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc--CCceEEEechhhH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKYR 360 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~--g~~t~v~~~ddyR 360 (722)
.-+|+|+|.+|+||||++.+|+..+... +.++.+++.|.||
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 4588999999999999999999877543 4678888888886
No 334
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.04 E-value=0.24 Score=55.94 Aligned_cols=109 Identities=13% Similarity=0.096 Sum_probs=61.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhhHH----Hhhc--CCCCC-CCC-CCCCHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR----LKHG--VNQSA-DFF-RADNPEGMEARNEVAA 389 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~-~~g~~t~v~~~ddyRr----~~~g--~~~~~-~~~-~~~~~~~~~~~~~va~ 389 (722)
+.-++++.|-||+|||++|-.++..+. ..+.++-+|+...-.. +... .+.+. .+. ..-+.+.+..+.+.+.
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~ 272 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAVD 272 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 455899999999999999999998876 4577888887542211 1110 11110 010 0112222333222222
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEEE
Q 004941 390 LAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLET 436 (722)
Q Consensus 390 ~~l~d~~~~l~~~G~vVIvDAtn~~~~-~R~~~~~l-~~~-~~~viflE~ 436 (722)
. +. .....|.|..+.+.. -|..++.+ .+. ++.+++|+-
T Consensus 273 ~--------l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDy 313 (421)
T TIGR03600 273 R--------LS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDY 313 (421)
T ss_pred H--------Hh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 2 22 245666666666655 47777766 344 688888873
No 335
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.04 E-value=0.25 Score=48.60 Aligned_cols=106 Identities=15% Similarity=0.172 Sum_probs=56.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec--------hhhHHHhhcCCCCCCCCCCC-----CHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV--------GKYRRLKHGVNQSADFFRAD-----NPEGMEARNEV 387 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~--------ddyRr~~~g~~~~~~~~~~~-----~~~~~~~~~~v 387 (722)
-++.++|..|||||||.+.|+..+.-..- ...++. ..+|+...-..+...++... -..+.+++..+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~l 107 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRPTSG-RVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGL 107 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCC-eEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHH
Confidence 37999999999999999999976542111 112222 11222111112222333211 01123344455
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCC--CHHHHHHHHHH----HcCCceEEEEE
Q 004941 388 AALAMEDMISWMHEGGQVGIFDATNS--SRKRRNMLMKM----AEGNCKIIFLE 435 (722)
Q Consensus 388 a~~~l~d~~~~l~~~G~vVIvDAtn~--~~~~R~~~~~l----~~~~~~viflE 435 (722)
|+..+. .-.++|+|-... ....|+.+.++ .+.+..++++.
T Consensus 108 a~al~~--------~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s 153 (173)
T cd03246 108 ARALYG--------NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIA 153 (173)
T ss_pred HHHHhc--------CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 555444 788999998754 45556655554 33455444443
No 336
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.02 E-value=0.024 Score=58.07 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=30.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh-hHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRR 361 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd-yRr 361 (722)
++|.+=|..||||||+|+.||++|++. .+|.|. ||-
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~-----yldTGamYRa 41 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFH-----YLDTGAMYRA 41 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCC-----eecccHHHHH
Confidence 688889999999999999999999998 666653 554
No 337
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.01 E-value=0.032 Score=53.55 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=28.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
+|.++|..+|||||+++.|..+|...|.+.-++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence 689999999999999999999999888887744
No 338
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.01 E-value=0.22 Score=58.20 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=24.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
.+-.++|+|-||+||||+|+.|++.|..
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4457899999999999999999999864
No 339
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.01 E-value=0.15 Score=55.74 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=31.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
+..++.+.|-|||||||||-.++......+..+-++|.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 45689999999999999999988777666777777765
No 340
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=95.00 E-value=0.22 Score=57.36 Aligned_cols=113 Identities=16% Similarity=0.174 Sum_probs=70.9
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
...|++|+|-|+-||||.+..+.|.+.|.-.|+++..+..-. ..+...-.+...-+.
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~-----------------~eE~~~~flwRfw~~------ 93 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPS-----------------DEERERPPMWRFWRR------ 93 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCC-----------------HHHhcCcHHHHHHHh------
Confidence 457999999999999999999999999988887766552211 111111111222222
Q ss_pred HHHhcCCeEEEEeCCCCCHH-------------HHHHHHH-------HHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCC
Q 004941 397 SWMHEGGQVGIFDATNSSRK-------------RRNMLMK-------MAEGNCKIIFLETICNDRDIIERNIRLKIQQSP 456 (722)
Q Consensus 397 ~~l~~~G~vVIvDAtn~~~~-------------~R~~~~~-------l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~p 456 (722)
|=..|.++|+|-+...+. .+..+.+ |...|+.++=+-... +.+..++|++.|.. +|
T Consensus 94 --lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhI-sk~EQ~kRl~~r~~-~P 169 (493)
T TIGR03708 94 --LPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHL-SKKQQKERLKKLEK-DP 169 (493)
T ss_pred --CCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC-CHHHHHHHHHHHhc-CC
Confidence 224699999998766542 2222222 256677664444444 57888999988865 44
No 341
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.97 E-value=0.076 Score=56.98 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.++++|.||+|||++|+.+++.++
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998875
No 342
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.96 E-value=0.15 Score=55.45 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=35.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+.-++|.|-||+|||+||.+|+..+...|+++.++...++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l 195 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEF 195 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHH
Confidence 3469999999999999999999999988999998877554
No 343
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=94.96 E-value=0.35 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.|.++|.+|+|||||+.+|....+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g 27 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGG 27 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999986544
No 344
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.96 E-value=0.38 Score=57.07 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=25.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
-+-.++|+|-+|+||||+|+.|++.|+-.
T Consensus 37 l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 37 LHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 45689999999999999999999998753
No 345
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.95 E-value=1.1 Score=46.78 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
+-+++++|-+|+||||+++.+.+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44789999999999999999998876
No 346
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.096 Score=58.87 Aligned_cols=147 Identities=16% Similarity=0.261 Sum_probs=86.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 397 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~ 397 (722)
....||+=+.--||||||+|+.|.+.++|..+..|-+. ...... +..+...+.
T Consensus 372 ~e~tll~pia~igcgktt~ak~l~~lf~w~~vqnd~ls------------------gk~~~k---~~~kai~~~------ 424 (758)
T COG5324 372 KEFTLLVPIATIGCGKTTVAKILEKLFGWPVVQNDNLS------------------GKGGPK---RFAKAIIEE------ 424 (758)
T ss_pred ceeEEEEEEEEeccCcccHHHHHHHHcCCcccccCCCC------------------CCCchh---HHHHHHHHH------
Confidence 34557777888899999999999999999844433221 112221 111111111
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH---HcCCceEEEEEEEe--CCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 004941 398 WMHEGGQVGIFDATNSSRKRRNMLMKM---AEGNCKIIFLETIC--NDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 472 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~~~~~R~~~~~l---~~~~~~viflE~~c--~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~ 472 (722)
+..+-.+|++|-.|..-..|..+..- ...|++++-+-..- ..++....|+-+| +...+.. .+++..+...
T Consensus 425 -~r~~~~~v~~drnnh~~~~r~~lq~d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqr---g~~hqsi-k~~eg~~kv~ 499 (758)
T COG5324 425 -FRNGHSVVFADRNNHISNMRSTLQTDILALIDGVRFVALPFKHTPEVPEFVQNRVLQR---GDRHQSI-KVSEGVDKVK 499 (758)
T ss_pred -hccCceEEEEcccchhhhhhhhhhcceEEEecCcEEEecccccCcccHHHHHHHHHhc---cCCccce-eeccchHHHH
Confidence 22344577777777776778777653 33466555443311 1345556665544 2223333 5566777777
Q ss_pred HHHHhhhcccccCCCC-----CeEEEeec
Q 004941 473 NRLANYEKVYEPVDEG-----SYIKMIDM 496 (722)
Q Consensus 473 ~Ri~~y~~~yEpl~e~-----~yik~i~~ 496 (722)
.-+..+-+.|.|++.+ .|--||..
T Consensus 500 ~imn~f~k~ykp~~~~~~~d~~~d~~iel 528 (758)
T COG5324 500 AIMNTFYKQYKPFDAGNKHDANYDDIIEL 528 (758)
T ss_pred HHHHHHHHhcCCCCCCCCccccccceeec
Confidence 7778888899999965 45555544
No 347
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.94 E-value=0.16 Score=53.64 Aligned_cols=86 Identities=17% Similarity=0.194 Sum_probs=55.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 398 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~ 398 (722)
++.=+++.|-||+|||+||.+|+..+...|+++.++..-+.-+.+... +. ..+. -.++.+. +
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~-----~~-~~~~-----~~~l~~~-l------ 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA-----FD-EGRL-----EEKLLRE-L------ 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH-----Hh-cCch-----HHHHHHH-h------
Confidence 455799999999999999999999999779999999774432211100 00 0000 0111221 1
Q ss_pred HhcCCeEEEEeCCCCCH---HHHHHHHHH
Q 004941 399 MHEGGQVGIFDATNSSR---KRRNMLMKM 424 (722)
Q Consensus 399 l~~~G~vVIvDAtn~~~---~~R~~~~~l 424 (722)
..-.+.|+|.....+ ..+..+.++
T Consensus 166 --~~~dlLIiDDlG~~~~~~~~~~~~~q~ 192 (254)
T COG1484 166 --KKVDLLIIDDIGYEPFSQEEADLLFQL 192 (254)
T ss_pred --hcCCEEEEecccCccCCHHHHHHHHHH
Confidence 146899999998743 457777775
No 348
>PRK09183 transposase/IS protein; Provisional
Probab=94.93 E-value=0.1 Score=55.28 Aligned_cols=39 Identities=26% Similarity=0.213 Sum_probs=31.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
..++++|-||+||||||.+|+..+...|.++..++..+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l 141 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADL 141 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHH
Confidence 367799999999999999999887777888877765433
No 349
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.93 E-value=0.032 Score=52.53 Aligned_cols=28 Identities=32% Similarity=0.209 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
...+|+|.|=.|+||||++|.|++.|+.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4569999999999999999999999864
No 350
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.93 E-value=0.11 Score=60.02 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=37.8
Q ss_pred hccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 309 ADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 309 ~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
.|.+++..=.+.-++++.|-||+||||+|.+++......|.++.++..++
T Consensus 252 lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE 301 (484)
T TIGR02655 252 LDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE 301 (484)
T ss_pred HHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 34555544345668999999999999999999987766677877776643
No 351
>PRK09087 hypothetical protein; Validated
Probab=94.92 E-value=0.17 Score=52.53 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=58.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH-hhcCCCC----C--CCCCCCCHHHHHHHHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL-KHGVNQS----A--DFFRADNPEGMEARNEVAALAMED 394 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~-~~g~~~~----~--~~~~~~~~~~~~~~~~va~~~l~d 394 (722)
.++++|-+|||||||++.+++..+.. +++.++.... ....... + ++.. ..++ .+-.
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~l~iDDi~~~~-~~~~-----------~lf~ 108 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL-----LIHPNEIGSDAANAAAEGPVLIEDIDAGG-FDET-----------GLFH 108 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE-----EecHHHcchHHHHhhhcCeEEEECCCCCC-CCHH-----------HHHH
Confidence 47999999999999999999765433 4443221110 0000000 1 1111 1121 1223
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHH---HcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 004941 395 MISWMHEGGQVGIFDATNSSRKRRNMLMKM---AEGNCKIIFLETICNDRDIIERNIRLKIQ 453 (722)
Q Consensus 395 ~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l---~~~~~~viflE~~c~d~~~i~~ri~~r~~ 453 (722)
++..+.+.|..+|+-++..-.........+ .+.+. .+++.-.+.+.+.+-++++..
T Consensus 109 l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl---~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 109 LINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAAT---VVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred HHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCc---eeecCCCCHHHHHHHHHHHHH
Confidence 344445578888887776555443333333 33332 556655666666666655543
No 352
>PRK04195 replication factor C large subunit; Provisional
Probab=94.90 E-value=0.13 Score=59.38 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=28.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+..++|+|.||+||||+|++|++.+++ ....+|..++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~---~~ielnasd~ 75 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGW---EVIELNASDQ 75 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC---CEEEEccccc
Confidence 557999999999999999999998753 4445555443
No 353
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=94.89 E-value=0.058 Score=54.69 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=28.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
-++|-+.|...|||||||+.|.+++... .+++-||+
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~----~lIhqDDF 39 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGC----SLIHQDDF 39 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCC----eeeccccc
Confidence 3677889999999999999999987543 36766666
No 354
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.88 E-value=0.32 Score=55.51 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=31.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc--CCceEEEechhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 359 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~--g~~t~v~~~ddy 359 (722)
-++++|-||+|||+|+++++..+... +.++..++..++
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~ 189 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF 189 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 37889999999999999999998765 566667776554
No 355
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=94.87 E-value=0.29 Score=51.00 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=67.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPE-GMEARNEVAALAMEDMI 396 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~-~~~~~~~va~~~l~d~~ 396 (722)
..|++|+|-|..||||.-+.+.|...|.-.|+++..|.. +..++ ..-.+...=+.
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~------------------pt~eE~~~p~lwRfw~~------ 84 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPK------------------PSDRERTQWYFQRYVQH------ 84 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCC------------------CCHHHHcChHHHHHHHh------
Confidence 359999999999999999999999887766666655521 11111 11111111111
Q ss_pred HHHhcCCeEEEEeCCCCCHHH-------------HHHHH---H----HHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 004941 397 SWMHEGGQVGIFDATNSSRKR-------------RNMLM---K----MAEGNCKIIFLETICNDRDIIERNIRLKIQ 453 (722)
Q Consensus 397 ~~l~~~G~vVIvDAtn~~~~~-------------R~~~~---~----l~~~~~~viflE~~c~d~~~i~~ri~~r~~ 453 (722)
|=..|+++|+|-......- ...+. . |...|+.++=+-... +.+..++|++.+..
T Consensus 85 --lP~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhI-sk~eQ~kRl~~r~~ 158 (230)
T TIGR03707 85 --LPAAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSV-SREEQLRRFKARID 158 (230)
T ss_pred --CCCCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC-CHHHHHHHHHHHhc
Confidence 2346999999988766522 11111 1 256777664444444 57888999988864
No 356
>PF05729 NACHT: NACHT domain
Probab=94.86 E-value=0.024 Score=54.07 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=24.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcC
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLG 348 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g 348 (722)
+++++|-||+||||+++.++..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 689999999999999999999886543
No 357
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.84 E-value=0.28 Score=56.98 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=25.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
-+-.++|+|-||+||||+|+.|++.|+..
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35589999999999999999999999753
No 358
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.83 E-value=0.19 Score=55.08 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=31.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
+..++.+.|-|||||||||-.++......+..+-++|.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 45588899999999999999998777666777777766
No 359
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.83 E-value=0.028 Score=60.17 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=36.8
Q ss_pred CCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 315 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 315 ~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
+.+++|+++-+.|-+|+||+++|+.|++.+...|.++..+
T Consensus 105 ~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V 144 (344)
T KOG2170|consen 105 PNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFV 144 (344)
T ss_pred CCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhH
Confidence 4478999999999999999999999999999998888876
No 360
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.83 E-value=0.035 Score=57.02 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=32.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
-.++++|-||+|||++|+++++.+...+....+++..+
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 35889999999999999999998877777888887633
No 361
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.075 Score=62.05 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=25.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
+.|.=|+|.|.||||||++|++||..-+.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGM 494 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcC
Confidence 46778999999999999999999987643
No 362
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.76 E-value=0.035 Score=61.47 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=28.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc--CCceEEEechhhHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKYRRL 362 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~--g~~t~v~~~ddyRr~ 362 (722)
=.||-|.||+||||||+.|+..++.. -++.......+.|++
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i 92 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREI 92 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHH
Confidence 46889999999999999999987643 223333334455553
No 363
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.44 Score=56.24 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=25.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
-+-.++|+|-+|+||||+|+.|++.|..
T Consensus 37 ~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 37 VAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 4568899999999999999999999864
No 364
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=94.74 E-value=0.054 Score=56.41 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=31.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
+|.++|.+||||||++..|+++|...|+++-++
T Consensus 3 vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi 35 (229)
T PRK14494 3 AIGVIGFKDSGKTTLIEKILKNLKERGYRVATA 35 (229)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 789999999999999999999999888888888
No 365
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.74 E-value=0.23 Score=59.95 Aligned_cols=42 Identities=29% Similarity=0.310 Sum_probs=34.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh-hcC-CceEEEechhhH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLG-HDTKHFNVGKYR 360 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~-~~g-~~t~v~~~ddyR 360 (722)
++.+|.|+|..|+||||+..+|+.++. ..| .++-++..|.||
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 356999999999999999999998774 444 467788888886
No 366
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.70 E-value=0.21 Score=52.00 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=28.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
+.-++++.|-||+|||++|.+++...-..|.++.++..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 45689999999999999998876543345667766644
No 367
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.68 E-value=0.33 Score=59.47 Aligned_cols=28 Identities=32% Similarity=0.293 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
-+-.++|+|-+|+||||+|+.|++.|.-
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3457899999999999999999999963
No 368
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.68 E-value=0.026 Score=61.57 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=24.8
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCC
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGH 349 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~ 349 (722)
|+|.|.||+||||+|+.|++.|++..+
T Consensus 67 ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 67 VMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred EEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 899999999999999999999987644
No 369
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=94.68 E-value=0.4 Score=47.81 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=21.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
+|-+.+-.|||++++|++||+.|+..
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~ 26 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYP 26 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCc
Confidence 57888999999999999999999876
No 370
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.09 Score=60.91 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=23.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
|.=|++.|.||||||.||++||..|+.
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~v 249 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELGV 249 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcCC
Confidence 445899999999999999999999864
No 371
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.64 E-value=0.078 Score=59.75 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
|.-|+|+|.||+|||++|+.|++.++..
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 5678999999999999999999997644
No 372
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=94.60 E-value=0.029 Score=67.76 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=24.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
+|.+.|.|||||||+|+.|+++|++.
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~ 28 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYA 28 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 68999999999999999999999877
No 373
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.58 E-value=0.038 Score=64.99 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=35.5
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
+..+.+.+|||+||-||||||.-+|+. .|+++.-+|..|-|-
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq---aGYsVvEINASDeRt 364 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ---AGYSVVEINASDERT 364 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh---cCceEEEeccccccc
Confidence 455678999999999999999999998 678888888876654
No 374
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.56 E-value=0.027 Score=51.28 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.9
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
|++.|-||+|||++|+.|++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 375
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.55 E-value=0.41 Score=55.31 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=24.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
+-.++|+|-||+||||+|+.|++.|+-
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcC
Confidence 457999999999999999999998863
No 376
>PRK05636 replicative DNA helicase; Provisional
Probab=94.54 E-value=0.28 Score=56.89 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=66.9
Q ss_pred ccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechhhH-----HHhhcC-CCC-CCC-CCCCCHHH
Q 004941 310 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYR-----RLKHGV-NQS-ADF-FRADNPEG 380 (722)
Q Consensus 310 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~-~g~~t~v~~~ddyR-----r~~~g~-~~~-~~~-~~~~~~~~ 380 (722)
|.+++.. ++.-+|++.|-||.|||++|..++..... .+..+-+|+..--+ |.+... ..+ ..+ ...-+++.
T Consensus 256 D~~t~Gl-~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e 334 (505)
T PRK05636 256 DDLTNGL-RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDA 334 (505)
T ss_pred hhhcCCC-CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHH
Confidence 3444432 34568999999999999999999987653 46667677653211 111110 000 001 11123333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEE
Q 004941 381 MEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLE 435 (722)
Q Consensus 381 ~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~-~R~~~~~l-~~~~~~viflE 435 (722)
+..+.+.+.. +. .....|.|..+.+.. -|..++.+ .++++++++|.
T Consensus 335 ~~~~~~a~~~--------l~-~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvID 382 (505)
T PRK05636 335 WEKLVQRLGK--------IA-QAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVD 382 (505)
T ss_pred HHHHHHHHHH--------Hh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4433333322 22 356778888887754 57777777 56788888876
No 377
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.51 E-value=0.4 Score=54.38 Aligned_cols=108 Identities=16% Similarity=0.115 Sum_probs=60.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechhhHHHh----hc--CCCC-CCCCC-CCCHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRRLK----HG--VNQS-ADFFR-ADNPEGMEARNEVAA 389 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~-~g~~t~v~~~ddyRr~~----~g--~~~~-~~~~~-~~~~~~~~~~~~va~ 389 (722)
+.-++++.|-||+|||++|..++..+.. .|..+-+|+...-.... .. .+-+ ..+.. .-..+.+..+.+.+.
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a~~ 273 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSAAG 273 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHHHH
Confidence 4569999999999999999999987654 47777777764222111 11 1111 00100 112222222222222
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEE
Q 004941 390 LAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLE 435 (722)
Q Consensus 390 ~~l~d~~~~l~~~G~vVIvDAtn~~~~-~R~~~~~l-~~~~~~viflE 435 (722)
.+. .....|.|..+.+.. -+..++.+ .++++++++|.
T Consensus 274 --------~l~-~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID 312 (434)
T TIGR00665 274 --------KLS-EAPLYIDDTPGLTITELRAKARRLKREHGLGLIVID 312 (434)
T ss_pred --------HHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 222 234556565555544 46667766 56788888887
No 378
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.45 E-value=0.085 Score=59.95 Aligned_cols=26 Identities=42% Similarity=0.565 Sum_probs=23.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
..|+++|.||+||||+|++|+..+..
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 36888999999999999999998853
No 379
>PRK04328 hypothetical protein; Provisional
Probab=94.44 E-value=0.22 Score=52.33 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=29.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
..-++++.|-||+|||++|.+++..--..|.++.+++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 35589999999999999999877654345777777765
No 380
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.39 E-value=0.6 Score=51.30 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=34.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.-++|.|-||+|||+||.+++..+-..|..+..++..+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l 222 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADEL 222 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHH
Confidence 459999999999999999999999888888888877554
No 381
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.35 E-value=0.26 Score=54.86 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=36.8
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
...+-+++++|.-.|||||++..|+.++...|.++.++|.|
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaD 110 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDAD 110 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCC
Confidence 34566899999999999999999999999999999999875
No 382
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.35 E-value=0.32 Score=55.67 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=35.7
Q ss_pred hccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 309 ADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 309 ~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
.|.+++..=...-++++.|-||+||||++.+++..+...+.++-.++..
T Consensus 69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 69 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred HHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3455543322345899999999999999999998876567777777653
No 383
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=94.34 E-value=0.45 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
++-|+++|.||+||||+..+|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 567999999999999999999654
No 384
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.34 E-value=0.27 Score=54.87 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=35.6
Q ss_pred ccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 310 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 310 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
|.+++..=...-++++.|-||+||||++.+++..+...+.++-+++..
T Consensus 72 D~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 72 DRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred HHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 445543322345899999999999999999998887666677666653
No 385
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.32 E-value=0.52 Score=50.80 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=24.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.-|-+++++|-||+||||+|+++++.++
T Consensus 41 ~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 41 RIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 3466888899999999999999998763
No 386
>PF13245 AAA_19: Part of AAA domain
Probab=94.32 E-value=0.071 Score=45.85 Aligned_cols=24 Identities=38% Similarity=0.346 Sum_probs=18.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
++++.|.||||||+++..+..++-
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 688899999999966555555544
No 387
>PRK06620 hypothetical protein; Validated
Probab=94.32 E-value=0.41 Score=49.24 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
-.+++.|-||+|||||+++++...+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 3589999999999999999987754
No 388
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.24 E-value=0.88 Score=51.97 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=29.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhc--CCceEEEechhh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 359 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~--g~~t~v~~~ddy 359 (722)
++++|-||+|||+|+++++.++... +.++..++..++
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f 171 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 8999999999999999999988654 345556665443
No 389
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.24 E-value=0.29 Score=56.78 Aligned_cols=28 Identities=25% Similarity=0.166 Sum_probs=25.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
-+-+++|+|-||+||||+|+.|++.+..
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4567899999999999999999999864
No 390
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=94.23 E-value=0.05 Score=55.83 Aligned_cols=38 Identities=24% Similarity=0.136 Sum_probs=34.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
++++.|-+|+||||++..|+..+...|.++.+++.|--
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~ 38 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPA 38 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 47899999999999999999999999999999988644
No 391
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=94.22 E-value=0.081 Score=58.61 Aligned_cols=115 Identities=22% Similarity=0.237 Sum_probs=63.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh-------hcCCceEEEechhhHHHhhcCCCCC----------CCCCCCCHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR-------WLGHDTKHFNVGKYRRLKHGVNQSA----------DFFRADNPEGM 381 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~-------~~g~~t~v~~~ddyRr~~~g~~~~~----------~~~~~~~~~~~ 381 (722)
+.-++.++|-.||||||+++.|.--.. |.|-.++--+.|+||+.......+- .+..+...+.+
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~ 427 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKW 427 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHH
Confidence 445788999999999999999974332 3454555556789999765433321 11111222222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCH
Q 004941 382 EARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDR 441 (722)
Q Consensus 382 ~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~ 441 (722)
-.+.+++.+.- ..+|...-.+-....+.|-..+..+.+. -+++.++-++.|+
T Consensus 428 LqrLel~~kts-------l~d~~fs~~kLStGQkKRlAll~AllEe-R~Ilv~DEWAADQ 479 (546)
T COG4615 428 LQRLELAHKTS-------LNDGRFSNLKLSTGQKKRLALLLALLEE-RDILVLDEWAADQ 479 (546)
T ss_pred HHHHHHhhhhc-------ccCCcccccccccchHHHHHHHHHHHhh-CCeEEeehhhccC
Confidence 22222222210 1256666666555556666666665332 2455555555543
No 392
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.21 E-value=0.036 Score=62.31 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=27.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCce
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDT 351 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t 351 (722)
.|.-|+|+|.||+|||++|++|++.++...++.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~v 78 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 78 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEe
Confidence 355699999999999999999999987653333
No 393
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.21 E-value=0.21 Score=53.49 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=23.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
|..+++.|.||+||||+|..|++.|.
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 44899999999999999999999986
No 394
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.20 E-value=0.12 Score=51.59 Aligned_cols=121 Identities=13% Similarity=0.065 Sum_probs=59.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC-CCC-CCCCCHH--HHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-ADF-FRADNPE--GMEARNEVAALAMEDM 395 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~-~~~-~~~~~~~--~~~~~~~va~~~l~d~ 395 (722)
...++++|-+||||||+.+.|...+.... ....+ .+...... .... ..+ +...... ......++.+.+++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~-~~i~i--ed~~E~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR-- 98 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDE-RIITI--EDTAELQL-PHPNWVRLVTRPGNVEGSGEVTMADLLRSALR-- 98 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCC-CEEEE--CCccccCC-CCCCEEEEEEecCCCCCCCccCHHHHHHHHhc--
Confidence 45899999999999999999998775322 22222 11111111 0000 000 1111000 00111222222222
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 004941 396 ISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 453 (722)
Q Consensus 396 ~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~ 453 (722)
..-..++++=.- ..+..+.+ +....|..-.+--+++++....-+|+.....
T Consensus 99 -----~~pd~i~igEir-~~ea~~~~-~a~~tGh~g~~~T~Ha~s~~~~~~Rl~~~~~ 149 (186)
T cd01130 99 -----MRPDRIIVGEVR-GGEALDLL-QAMNTGHPGGMTTIHANSAEEALTRLELLPS 149 (186)
T ss_pred -----cCCCEEEEEccC-cHHHHHHH-HHHhcCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 234555554333 34444433 3445565534556678888877788876544
No 395
>PRK08760 replicative DNA helicase; Provisional
Probab=94.19 E-value=0.41 Score=55.23 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=64.1
Q ss_pred ccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechhhHH----HhhcCC--CC-CCCCC-CCCHHH
Q 004941 310 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRR----LKHGVN--QS-ADFFR-ADNPEG 380 (722)
Q Consensus 310 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~-~g~~t~v~~~ddyRr----~~~g~~--~~-~~~~~-~~~~~~ 380 (722)
|.+++.. .+.-+|++.|-||.|||++|-.++..... .+..+-+|+...-.. +..... .+ ..+.. .-+.+.
T Consensus 220 D~~t~G~-~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e 298 (476)
T PRK08760 220 DAMTAGL-QPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALEDED 298 (476)
T ss_pred HHHhcCC-CCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhhCCCcHHHHhcCCCCHHH
Confidence 4455432 34569999999999999999999987753 367777777642211 111111 00 00110 112222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEE
Q 004941 381 MEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLE 435 (722)
Q Consensus 381 ~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~-~R~~~~~l-~~~~~~viflE 435 (722)
+..+.+.+.. |. .-...|.|..+.+.+ -|..++.+ .+.++.+++|.
T Consensus 299 ~~~~~~a~~~--------l~-~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvID 346 (476)
T PRK08760 299 WARVTGAIKM--------LK-ETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVID 346 (476)
T ss_pred HHHHHHHHHH--------Hh-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3322222222 22 245666666666655 46677777 55677777776
No 396
>PRK06321 replicative DNA helicase; Provisional
Probab=94.19 E-value=0.46 Score=54.70 Aligned_cols=117 Identities=14% Similarity=0.083 Sum_probs=65.1
Q ss_pred hccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechhhHH----HhhcCCC--C-CCC-CCCCCHH
Q 004941 309 ADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRR----LKHGVNQ--S-ADF-FRADNPE 379 (722)
Q Consensus 309 ~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~-~g~~t~v~~~ddyRr----~~~g~~~--~-~~~-~~~~~~~ 379 (722)
.|.+++.. +..-+|++.|-||.|||++|-.|+..... .+..+-+|+..--.. +...... + ..+ ...-+.+
T Consensus 216 LD~~t~Gl-~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~ 294 (472)
T PRK06321 216 LDKMINGF-SPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGR 294 (472)
T ss_pred HHHHhcCC-CCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhcCCCHHHhhcCCCCHH
Confidence 34555422 34569999999999999999999987653 466777776632211 1111100 0 111 1111233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEE
Q 004941 380 GMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLE 435 (722)
Q Consensus 380 ~~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~-~R~~~~~l-~~~~~~viflE 435 (722)
.+..+.+.+.. |. .....|-|..+.+.. -|..++.+ .++++++++|+
T Consensus 295 e~~~~~~a~~~--------l~-~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvID 343 (472)
T PRK06321 295 DFQRIVSVVNE--------MQ-EHTLLIDDQPGLKITDLRARARRMKESYDIQFLIID 343 (472)
T ss_pred HHHHHHHHHHH--------HH-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 33333333322 22 234555555555554 57777777 56778888876
No 397
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.19 E-value=0.19 Score=54.39 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
.-++++.||+|||||||.|.|-+-.
T Consensus 54 GeIfViMGLSGSGKSTLvR~~NrLi 78 (386)
T COG4175 54 GEIFVIMGLSGSGKSTLVRLLNRLI 78 (386)
T ss_pred CeEEEEEecCCCCHHHHHHHHhccC
Confidence 4478888999999999999987543
No 398
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.16 E-value=0.095 Score=59.24 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=23.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
--|+|+|.||+|||++|+.|++.+++.
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVP 135 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 358999999999999999999987654
No 399
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.15 E-value=0.35 Score=52.33 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=28.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcC--CceEEEechhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHFNVGKY 359 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g--~~t~v~~~ddy 359 (722)
.++++|-||+||||+|+.+++.+...+ .+...++..++
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 367999999999999999999986432 23345555443
No 400
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.13 E-value=0.74 Score=51.76 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=30.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc--CCceEEEechhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 359 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~--g~~t~v~~~ddy 359 (722)
.+++.|-||+|||+|+++++..+... +.++..++..++
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~ 177 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF 177 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence 47889999999999999999988654 556666766544
No 401
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.10 E-value=0.046 Score=53.45 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=21.7
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
...+.+++++|.+|+|||++.+++.+++...
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3456799999999999999999999988765
No 402
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.07 E-value=0.052 Score=53.78 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
|+++|-||+||||+.+.+.+.|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999999953
No 403
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.04 E-value=0.46 Score=55.48 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=24.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
-+-.++|+|-||+||||+|+.|++.|..
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3457899999999999999999999864
No 404
>PRK08006 replicative DNA helicase; Provisional
Probab=94.03 E-value=0.62 Score=53.66 Aligned_cols=117 Identities=14% Similarity=0.130 Sum_probs=66.8
Q ss_pred ccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhhH-----HHhhcCC-CC-CCCC-CCCCHHH
Q 004941 310 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYR-----RLKHGVN-QS-ADFF-RADNPEG 380 (722)
Q Consensus 310 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~-~~g~~t~v~~~ddyR-----r~~~g~~-~~-~~~~-~~~~~~~ 380 (722)
|.+++... +.-+|++.|-||.|||++|-.|+.... ..+..+-+|+..--. |...... -+ ..+. ..-+++.
T Consensus 215 D~~~~Gl~-~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e 293 (471)
T PRK08006 215 NKKTAGLQ-PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDED 293 (471)
T ss_pred HHhhcCCC-CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHH
Confidence 34444332 456899999999999999999998765 346777777763111 1111110 00 1111 1123444
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEE
Q 004941 381 MEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLE 435 (722)
Q Consensus 381 ~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~-~R~~~~~l-~~~-~~~viflE 435 (722)
+..+.+.+...+. .-...|.|..+.+.. -|..++.+ .++ ++.+++|.
T Consensus 294 ~~~~~~a~~~~~~--------~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvID 343 (471)
T PRK08006 294 WARISGTMGILLE--------KRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMID 343 (471)
T ss_pred HHHHHHHHHHHHh--------cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 4444433333222 446777777777765 47777776 444 57888876
No 405
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.03 E-value=0.11 Score=60.05 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=24.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
|.=|+|.|.||+|||++|++++..|...
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4458999999999999999999998654
No 406
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=94.02 E-value=0.14 Score=53.33 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=80.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHH---HHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNE---VAALAMEDM 395 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~---va~~~l~d~ 395 (722)
++.-++++|-||+||.|+|..|++.+...+ +.++|.-|........ -..+....+.+ +-..+.-.|
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~h-----l~tGdllr~~ia~~te------lg~~~~~~~~~g~lvpDeiv~~~ 82 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIH-----ISTGDLLRDEIASGTE------LGKEAKEAIDKGKLVPDEVVVRL 82 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCcc-----chhHHHHHHHHhccCc------HHHHHHHHHHhcCcCcHHHHHHH
Confidence 467899999999999999999998876553 5555553321111000 01111111100 000000012
Q ss_pred HHHHhcC---CeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhh-----------cCCC---
Q 004941 396 ISWMHEG---GQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQ-----------QSPD--- 457 (722)
Q Consensus 396 ~~~l~~~---G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~~-----------~~pd--- 457 (722)
++...+. .+..|+|..-.+...-+.+.+. .+ .-.+|+..|+ ++.|.+||..|.. ..|.
T Consensus 83 l~~~l~~~~~~~~~ildg~Prt~~qa~~l~~~~~~---~d~Vi~l~vp-~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~ 158 (235)
T KOG3078|consen 83 LEKRLENPRCQKGFILDGFPRTVQQAEELLDRIAQ---IDLVINLKVP-EEVLVDRITGRRIHPASGRVYHLEFNPPKVP 158 (235)
T ss_pred HHhhccccccccccccCCCCcchHHHHHHHHccCC---cceEEEecCC-HHHHHHHHhcccccCcccceecccccCCccc
Confidence 2222222 3678888877666544443333 22 1246667775 6788888877631 1111
Q ss_pred ----CCCC---CChHHHHHHHHHHHHhhhcccccCCC
Q 004941 458 ----YAEE---PDFEAGLQDFKNRLANYEKVYEPVDE 487 (722)
Q Consensus 458 ----~~~~---~d~e~a~~df~~Ri~~y~~~yEpl~e 487 (722)
..+. -+.++..+-.++|+..|.+.-.|+-+
T Consensus 159 ~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~e 195 (235)
T KOG3078|consen 159 GKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLE 195 (235)
T ss_pred cccccccChhhcCccccHHHHHHHHHHHhhcchHHHH
Confidence 0000 02244456678899999887666654
No 407
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.01 E-value=0.65 Score=54.87 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=30.5
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh--cCCceEEEechhh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 359 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~--~g~~t~v~~~ddy 359 (722)
++|+|-+|+|||+|+++++.++.. .+.++..++..++
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef 355 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF 355 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 799999999999999999999864 3677777766544
No 408
>PRK05595 replicative DNA helicase; Provisional
Probab=94.01 E-value=0.53 Score=53.72 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=65.0
Q ss_pred ccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhhHH-----HhhcC-CCC-CCCCC-CCCHHH
Q 004941 310 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR-----LKHGV-NQS-ADFFR-ADNPEG 380 (722)
Q Consensus 310 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~-~~g~~t~v~~~ddyRr-----~~~g~-~~~-~~~~~-~~~~~~ 380 (722)
|.+++.. .+.-++++.|-||.|||++|..++..+. ..|.++-+|+..--.+ ..... +.+ ..+.. .-+.+.
T Consensus 192 d~~~~G~-~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~a~~~~v~~~~~~~~~l~~~e 270 (444)
T PRK05595 192 DAKTSGF-QKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLLCSEANVDMLRLRTGNLEDKD 270 (444)
T ss_pred HHhcCCC-CCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHH
Confidence 3444422 2445899999999999999999998765 3477787887642211 11110 011 01111 112333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEE
Q 004941 381 MEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLE 435 (722)
Q Consensus 381 ~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~-~R~~~~~l-~~~~~~viflE 435 (722)
+..+.+.+.. +. .....|.|..+.+.. -|..++.+ .++++.+++|+
T Consensus 271 ~~~~~~~~~~--------l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvID 318 (444)
T PRK05595 271 WENIARASGP--------LA-AAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILID 318 (444)
T ss_pred HHHHHHHHHH--------Hh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3333322221 22 245667777676654 47777777 56678887776
No 409
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.00 E-value=0.54 Score=55.72 Aligned_cols=29 Identities=38% Similarity=0.406 Sum_probs=25.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
-+-.++|+|-+|+||||+|+.|++.|...
T Consensus 45 i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 45 IAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 35579999999999999999999998744
No 410
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.98 E-value=0.48 Score=56.03 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=24.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
-+-.++|+|-||+||||+|+.|++.|.
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345789999999999999999999986
No 411
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.97 E-value=0.93 Score=50.80 Aligned_cols=42 Identities=31% Similarity=0.269 Sum_probs=32.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh--hcCCceEEEechhhHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRR 361 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~--~~g~~t~v~~~ddyRr 361 (722)
+.+|+|+|.-|.||||.-.+||.++. ....++-++.+|.||=
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI 246 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI 246 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh
Confidence 67999999999999876666665555 4456778899999953
No 412
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.97 E-value=0.36 Score=49.25 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 348 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g 348 (722)
...++.++|-||+|||++|..++......+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~ 47 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPG 47 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhccc
Confidence 355899999999999999999987654333
No 413
>PRK09165 replicative DNA helicase; Provisional
Probab=93.97 E-value=0.56 Score=54.42 Aligned_cols=35 Identities=34% Similarity=0.403 Sum_probs=26.5
Q ss_pred ccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 310 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 310 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
|.+++.. .+.-+|++.|-||.|||++|-.++....
T Consensus 208 D~~~gG~-~~g~livIaarpg~GKT~~al~ia~~~a 242 (497)
T PRK09165 208 DSKLGGL-HPSDLIILAGRPSMGKTALATNIAFNAA 242 (497)
T ss_pred hhhcCCC-CCCceEEEEeCCCCChHHHHHHHHHHHH
Confidence 4555432 3445899999999999999988887654
No 414
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=93.95 E-value=0.065 Score=65.62 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=31.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh-hHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRR 361 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd-yRr 361 (722)
+++|.+.|.|||||||+|+.||++|++. ++|+|. ||.
T Consensus 34 ~~~i~idG~~gsGKst~~~~la~~l~~~-----~~~~g~~yRa 71 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRLGAQ-----CLNTGSFYRA 71 (863)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHHHHH
Confidence 4689999999999999999999999876 677764 444
No 415
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.94 E-value=0.12 Score=59.17 Aligned_cols=49 Identities=18% Similarity=0.076 Sum_probs=35.8
Q ss_pred hccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 309 ADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 309 ~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
.|.+++..=...-++++.|-||+||||++.+++..+...+.++-+++..
T Consensus 83 LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E 131 (454)
T TIGR00416 83 LDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE 131 (454)
T ss_pred HHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 3445543323455899999999999999999998876666666666653
No 416
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.92 E-value=0.64 Score=56.27 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
-+++.|-||+||||+|+.|++.+.
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 468899999999999999998754
No 417
>PHA02542 41 41 helicase; Provisional
Probab=93.91 E-value=0.48 Score=54.61 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=37.0
Q ss_pred hccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 309 ADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 309 ~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
.|.+++..-.+.-+|++.|-||.||||+|..++......|.++-+|+..
T Consensus 179 LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLE 227 (473)
T PHA02542 179 LNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISME 227 (473)
T ss_pred HHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 3456622223456899999999999999999998876667888888763
No 418
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.87 E-value=0.075 Score=56.84 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=29.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
+|.++|.+|||||||+..|.+.|...| ++-++..
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKh 36 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKH 36 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEE
Confidence 799999999999999999999999888 6666643
No 419
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.87 E-value=0.15 Score=57.20 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
.|.-|+|+|.||+|||++|++++..++.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~ 191 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNA 191 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCC
Confidence 4556899999999999999999998653
No 420
>COG4240 Predicted kinase [General function prediction only]
Probab=93.85 E-value=0.087 Score=54.45 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=37.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcC-CceEEEechhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g-~~t~v~~~ddy 359 (722)
.+|+++-++|--||||||+|-.|...|...| .++-.++.||.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDl 90 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDL 90 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhh
Confidence 4699999999999999999999999999887 58878887765
No 421
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=93.85 E-value=0.042 Score=56.88 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
++|.++|+|||||||+|+.+.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~ 23 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN 23 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc
Confidence 37999999999999999999764
No 422
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.81 E-value=0.56 Score=46.13 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=22.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.-++.++|..|||||||.+.|+..+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34799999999999999999987653
No 423
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=93.78 E-value=0.12 Score=50.28 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.8
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 004941 323 IVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~ 343 (722)
|+++|.+|+|||||..++...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999998754
No 424
>PRK10646 ADP-binding protein; Provisional
Probab=93.78 E-value=0.063 Score=52.46 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=24.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
..+|+|.|=-|+||||++|.|++.|+.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 458999999999999999999999874
No 425
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.78 E-value=0.41 Score=51.33 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhc
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
++++|-||+||||+++.+++.+...
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6999999999999999999987543
No 426
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=93.77 E-value=0.083 Score=52.50 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=25.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
+++++|+.||||||+-+.|.+ ....+.+.-++
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI 33 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVI 33 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEE
Confidence 689999999999999999997 44456666666
No 427
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.77 E-value=0.5 Score=46.41 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
-++.++|.+|+||||+.+.|+-.+.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4799999999999999999997664
No 428
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.74 E-value=0.72 Score=45.56 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=51.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh-------hHHHhhcCCCCCCCCCC--------CCHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-------YRRLKHGVNQSADFFRA--------DNPEGMEARN 385 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd-------yRr~~~g~~~~~~~~~~--------~~~~~~~~~~ 385 (722)
-++.++|.+||||||+.+.|+..+.... -...++..+ +|+...-..+...++.. .-..+.+++.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv 107 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQ-GEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRL 107 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCC-CEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHH
Confidence 4799999999999999999997654221 122333311 12211111122223321 1111234444
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCCC--CHHHHHHHHHH
Q 004941 386 EVAALAMEDMISWMHEGGQVGIFDATNS--SRKRRNMLMKM 424 (722)
Q Consensus 386 ~va~~~l~d~~~~l~~~G~vVIvDAtn~--~~~~R~~~~~l 424 (722)
.+|+.++. .-.++|+|-... ....++.+.++
T Consensus 108 ~laral~~--------~p~~lllDEP~~~LD~~~~~~l~~~ 140 (178)
T cd03247 108 ALARILLQ--------DAPIVLLDEPTVGLDPITERQLLSL 140 (178)
T ss_pred HHHHHHhc--------CCCEEEEECCcccCCHHHHHHHHHH
Confidence 55555444 778999998764 45556555554
No 429
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.73 E-value=1.2 Score=52.75 Aligned_cols=29 Identities=31% Similarity=0.269 Sum_probs=25.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
-+-+++|+|-+|+||||+|+.|++.|...
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 45588999999999999999999998753
No 430
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.72 E-value=0.42 Score=51.74 Aligned_cols=119 Identities=13% Similarity=0.060 Sum_probs=59.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-DFFRADNPEGMEARNEVAALAMEDMISW 398 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~-~~~~~~~~~~~~~~~~va~~~l~d~~~~ 398 (722)
+..|+++|-+||||||++++|.+.+.......+++-..+.++.... .... .+...... ....++.+.+|+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~-~~~~v~~~~~~~~---~~~~~~l~~aLR----- 202 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCA-APNVVQLRTSDDA---ISMTRLLKATLR----- 202 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCC-CCCEEEEEecCCC---CCHHHHHHHHhc-----
Confidence 3468899999999999999999887542112233333444442211 1111 11111111 022344444443
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 004941 399 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 451 (722)
Q Consensus 399 l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r 451 (722)
..-..+|+.=.-. .+.-+ +.+....|..-.+--+++++....-.|+..-
T Consensus 203 --~~pD~iivGEiR~-~ea~~-~l~a~~tGh~G~~tTiHa~~~~~ai~Rl~~l 251 (299)
T TIGR02782 203 --LRPDRIIVGEVRG-GEALD-LLKAWNTGHPGGIATIHANNAKAALDRLEQL 251 (299)
T ss_pred --CCCCEEEEeccCC-HHHHH-HHHHHHcCCCCeEEeeccCCHHHHHHHHHHH
Confidence 2344555543332 33322 2333444554335556777776666676543
No 431
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=93.72 E-value=0.079 Score=51.89 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=33.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
+.++.+-+|+||||+|..||..+...|.++-++|.|-
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 5677899999999999999999999999999999864
No 432
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=93.70 E-value=1.5 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~ 345 (722)
|.++|.+++|||||+.+|....+
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g 24 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTG 24 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999976554
No 433
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.69 E-value=0.73 Score=45.57 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=22.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.-++.++|..|+|||||.+.|+..+.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34799999999999999999986543
No 434
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.68 E-value=0.47 Score=52.36 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=26.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH--hhcCCceEE
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYL--RWLGHDTKH 353 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L--~~~g~~t~v 353 (722)
+.+|++.|-||||||.||-.|++.| ...+....+
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~ 36 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKELQNSEEGKKVLY 36 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHhhccccCCceEE
Confidence 3589999999999999999999998 434444433
No 435
>PRK06526 transposase; Provisional
Probab=93.65 E-value=0.053 Score=57.34 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=30.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
+.-++++|-||+|||++|.+|+..+...|.++.++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 3468999999999999999999888777777665544
No 436
>PRK08506 replicative DNA helicase; Provisional
Probab=93.59 E-value=0.62 Score=53.67 Aligned_cols=108 Identities=10% Similarity=0.129 Sum_probs=61.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH-----Hhhc-CCCC-CCCC-CCCCHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR-----LKHG-VNQS-ADFF-RADNPEGMEARNEVAAL 390 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr-----~~~g-~~~~-~~~~-~~~~~~~~~~~~~va~~ 390 (722)
+.-+|++.|-||.|||++|..++...-..|.++-+|+...-.. .... .+.+ ..+. ..-+.+.+..+.+.+..
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~ 270 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACDE 270 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4458999999999999999999987755677777777642211 1110 0000 0010 11123333333333222
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEE
Q 004941 391 AMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLE 435 (722)
Q Consensus 391 ~l~d~~~~l~~~G~vVIvDAtn~~~~-~R~~~~~l-~~~-~~~viflE 435 (722)
+. .....|.|..+.+.. -|..++.+ .+. ++.+++|.
T Consensus 271 --------l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvID 309 (472)
T PRK08506 271 --------LS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVID 309 (472)
T ss_pred --------HH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 22 245777777676665 47777777 333 57777776
No 437
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.54 E-value=1.4 Score=50.20 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
.|.-++|+|.||+|||++|++++..+...
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~ 244 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSAT 244 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 34568889999999999999999987643
No 438
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=93.50 E-value=0.52 Score=51.23 Aligned_cols=120 Identities=17% Similarity=0.287 Sum_probs=66.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCC-------------CC---CCCCCCCCHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVN-------------QS---ADFFRADNPEGME 382 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~-------------~~---~~~~~~~~~~~~~ 382 (722)
+-.||++.|--|+|||-||..||.+++.. ++|.|.+ ++-.|++ .. .+......+-+..
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~E-----IINsDkm-QvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~ 79 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGE-----IINSDKM-QVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAG 79 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCce-----eecccce-eeecCcccccccCChhhcCCCChHHhCcCChHhhccHH
Confidence 45699999999999999999999886655 5555433 1111111 00 2333333333344
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH-----H---H----------cCCceEEEEEEEeCCHHHH
Q 004941 383 ARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMK-----M---A----------EGNCKIIFLETICNDRDII 444 (722)
Q Consensus 383 ~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~-----l---~----------~~~~~viflE~~c~d~~~i 444 (722)
.....|..+.+++. +.+...+|+-++|..-.. .+.+ . . +..+.++|+. .++.++
T Consensus 80 ~F~~~a~~aie~I~---~rgk~PIv~GGs~~yi~a--l~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWld---a~~~VL 151 (348)
T KOG1384|consen 80 EFEDDASRAIEEIH---SRGKLPIVVGGSNSYLQA--LLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLD---ADQAVL 151 (348)
T ss_pred HHHHHHHHHHHHHH---hCCCCCEEeCCchhhHHH--HhhcCCCcccCcccccCCCCCcccccceEEEEEe---cchHHH
Confidence 55566665555332 233456666666654321 1111 0 0 1334455555 367788
Q ss_pred HHHHHHhh
Q 004941 445 ERNIRLKI 452 (722)
Q Consensus 445 ~~ri~~r~ 452 (722)
-+++..|.
T Consensus 152 ~~~l~~RV 159 (348)
T KOG1384|consen 152 FERLDKRV 159 (348)
T ss_pred HHHHHHHH
Confidence 88887764
No 439
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.48 E-value=0.83 Score=54.33 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=25.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
-+-.++|+|.||+||||+|+.|++.|...
T Consensus 37 i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 37 VGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34579999999999999999999999763
No 440
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.48 E-value=0.73 Score=52.81 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
-+-.++|+|-||+||||+|+.+++.+.-
T Consensus 38 i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 38 AAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3567899999999999999999999864
No 441
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.47 E-value=0.58 Score=51.62 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=58.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFR-ADNPEGMEARNEVAALAMEDMISW 398 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~-~~~~~~~~~~~~va~~~l~d~~~~ 398 (722)
.-+|+++|-+||||||+.+.|.+++...... .++-..+-..... ......+.. +.+.. .....+..+.++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~-~i~tiEdp~E~~~-~~~~~~i~q~evg~~-~~~~~~~l~~~l------ 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAG-HIITIEDPIEYVH-RNKRSLINQREVGLD-TLSFANALRAAL------ 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCC-EEEEEcCChhhhc-cCccceEEccccCCC-CcCHHHHHHHhh------
Confidence 3579999999999999999999887643111 2221111111111 000000100 00100 011122223333
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHH
Q 004941 399 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIR 449 (722)
Q Consensus 399 l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~ 449 (722)
..+-.++++|=.. .++.-..+.+.+..|.. ++--++..+....-.|+.
T Consensus 193 -r~~pd~i~vgEir-d~~~~~~~l~aa~tGh~-v~~T~Ha~~~~~~~~Rl~ 240 (343)
T TIGR01420 193 -REDPDVILIGEMR-DLETVELALTAAETGHL-VFGTLHTNSAAQTIERII 240 (343)
T ss_pred -ccCCCEEEEeCCC-CHHHHHHHHHHHHcCCc-EEEEEcCCCHHHHHHHHH
Confidence 2346677777665 33433444445566764 566667766665556654
No 442
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=93.46 E-value=0.64 Score=53.79 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
|.-++|.|-||+|||++|++|+..++.
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~ 114 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGV 114 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCC
Confidence 445899999999999999999988643
No 443
>PRK09354 recA recombinase A; Provisional
Probab=93.45 E-value=0.58 Score=51.77 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=30.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
+..++.+.|-|||||||||-.++......|-.+-.+|.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~ 96 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 96 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 45689999999999999999988766666767767765
No 444
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.41 E-value=0.093 Score=60.32 Aligned_cols=42 Identities=31% Similarity=0.343 Sum_probs=33.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh-cC-CceEEEechhhH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LG-HDTKHFNVGKYR 360 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~-~g-~~t~v~~~ddyR 360 (722)
++.+|.|+|..|+||||++.+|+.++.. .| .++-+++.|.||
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 3569999999999999999999988753 34 467778877774
No 445
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.40 E-value=0.037 Score=52.46 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=18.4
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhc
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
|+|-|.||.||||+|++|++.++..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 6789999999999999999987643
No 446
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=93.37 E-value=0.54 Score=46.24 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
.++.-|+++|.+|+||||+..+|...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35567899999999999999998754
No 447
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.37 E-value=0.9 Score=51.98 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=29.5
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
+++.|-||+|||+|+++++..+...+.++..++.+
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 57789999999999999999987777777767654
No 448
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.36 E-value=0.51 Score=56.15 Aligned_cols=25 Identities=32% Similarity=0.382 Sum_probs=23.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
.++|+|-||+||||+|+.|++.|..
T Consensus 40 a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred eEEEECCCCCChHHHHHHHHHHhcC
Confidence 5899999999999999999999864
No 449
>PRK10536 hypothetical protein; Provisional
Probab=93.33 E-value=0.72 Score=48.93 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=20.7
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~ 343 (722)
+++++|-+|+|||+||.+++..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999974
No 450
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.28 E-value=0.67 Score=46.58 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
.-++.++|.+|||||||.+.|+..+
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999765
No 451
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.28 E-value=0.23 Score=57.37 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
.|.-|+|.|.||+|||++|++|+..++..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 35568999999999999999999987644
No 452
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=93.25 E-value=0.098 Score=49.82 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.7
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 004941 323 IVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~ 343 (722)
|+++|.||+|||++..++...
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 688999999999999999754
No 453
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.25 E-value=0.26 Score=50.58 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=28.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~-g~~t~v~~~ 356 (722)
+.-++++.|-||+|||++|.+++..--.. |.++..+..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 34589999999999999999877554444 777777754
No 454
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=93.24 E-value=0.45 Score=45.45 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.8
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~ 343 (722)
+|+++|.+|+||||+..+|...
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~ 23 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKT 23 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhc
Confidence 5899999999999999999754
No 455
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.21 E-value=0.09 Score=53.46 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=25.1
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
+++.+|.++|++||||||+...|.+.+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998765
No 456
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=93.19 E-value=0.4 Score=49.38 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=56.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh---hHHHhhcCCCC--C-------CCCCCC-CHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK---YRRLKHGVNQS--A-------DFFRAD-NPEGMEARNEV 387 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd---yRr~~~g~~~~--~-------~~~~~~-~~~~~~~~~~v 387 (722)
.|++++|.+|+|||.+|-.||+.+++. +++.|. |+.+..+.+.. . .|+.+- -.++.-. .+-
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~p-----vI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~-a~e 75 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAP-----VISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIIN-AEE 75 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--E-----EEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCC-----EEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcC-HHH
Confidence 378999999999999999999999887 555442 23222222211 0 111110 0011000 111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-----HcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 004941 388 AALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-----AEGNCKIIFLETICNDRDIIERNIRLKIQ 453 (722)
Q Consensus 388 a~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l-----~~~~~~viflE~~c~d~~~i~~ri~~r~~ 453 (722)
|...|-+.+..+.+ +..+|+-... -..+.++ -..++.+...-...+|++....++.+|.+
T Consensus 76 a~~~Li~~v~~~~~-~~~~IlEGGS-----ISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~ 140 (233)
T PF01745_consen 76 AHERLISEVNSYSA-HGGLILEGGS-----ISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVR 140 (233)
T ss_dssp HHHHHHHHHHTTTT-SSEEEEEE-------HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc-cCceEEeCch-----HHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHH
Confidence 22223333333444 6677776544 2444444 22466666666667788766666555543
No 457
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=93.18 E-value=0.76 Score=44.63 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.5
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~ 345 (722)
|+++|.+|+||||+..+|.....
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~ 24 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTG 24 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcC
Confidence 78899999999999999987654
No 458
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.18 E-value=1.1 Score=48.98 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
-+-.++|+|-||+||||+|+.|++.|..
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4558899999999999999999999863
No 459
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=93.15 E-value=0.13 Score=50.68 Aligned_cols=37 Identities=27% Similarity=0.252 Sum_probs=32.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
+.++.+-.|+||||+|..|+..|...|.++-++|.|-
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~ 37 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDP 37 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEEST
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCc
Confidence 4577889999999999999999999999999999863
No 460
>PRK05748 replicative DNA helicase; Provisional
Probab=93.14 E-value=0.9 Score=51.89 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=63.6
Q ss_pred ccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechh----hH-HHhhcCC-CCCC-CC-CCCCHHH
Q 004941 310 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGK----YR-RLKHGVN-QSAD-FF-RADNPEG 380 (722)
Q Consensus 310 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~-~g~~t~v~~~dd----yR-r~~~g~~-~~~~-~~-~~~~~~~ 380 (722)
|.+++.. .+.-+|++.|-||.|||++|-.++..... .|..+-+|+... +. |...... .+.. +. ..-....
T Consensus 194 D~~~~G~-~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e 272 (448)
T PRK05748 194 DKMTSGL-QPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDD 272 (448)
T ss_pred HHhcCCC-CCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHH
Confidence 3444422 34558999999999999999999987653 477777777532 11 2111111 0100 10 1112222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEE
Q 004941 381 MEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLE 435 (722)
Q Consensus 381 ~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~-~R~~~~~l-~~~-~~~viflE 435 (722)
+..+.+.+.. +. .....|.|..+.+.. -|..++.+ .+. ++++++|.
T Consensus 273 ~~~~~~a~~~--------l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvID 321 (448)
T PRK05748 273 WPKLTIAMGS--------LS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILID 321 (448)
T ss_pred HHHHHHHHHH--------Hh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 3333333222 22 244566565566654 47777777 444 68888876
No 461
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.11 E-value=0.29 Score=51.51 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=31.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
...+++++|.||||||++|.+.+...-..|.++..+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~ 59 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST 59 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 45589999999999999999998777666888887765
No 462
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.09 E-value=0.41 Score=49.11 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=29.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
.-++++.|-||+|||++|.+++...-..|.++.+++.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 4588889999999999999998664445667766654
No 463
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.09 E-value=0.072 Score=56.40 Aligned_cols=30 Identities=27% Similarity=0.257 Sum_probs=23.8
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 355 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~ 355 (722)
|++.|-||+|||++|+.|++.++ .....++
T Consensus 24 vLL~G~~GtGKT~lA~~la~~lg---~~~~~i~ 53 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRD---RPVMLIN 53 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC---CCEEEEe
Confidence 56899999999999999998764 4444454
No 464
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=93.07 E-value=0.42 Score=43.23 Aligned_cols=60 Identities=12% Similarity=0.199 Sum_probs=46.3
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccCCCceEEEEecC-----CCCCceeEEEEEecC
Q 004941 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVP-----PNHETLDFKFLLKPK 98 (722)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~-----~~~~~leyKf~~~~~ 98 (722)
-++|++-||. -..+.|+|+-. +|++.. .+|.......|++.+... .++.--.|||.+...
T Consensus 6 g~~FrvwAP~---A~~V~l~GdFn---~W~~~~-~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~ 70 (99)
T cd02854 6 GVTYREWAPN---AEEVYLIGDFN---NWDRNA-HPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTP 70 (99)
T ss_pred eEEEEEECCC---CCEEEEEccCC---CCCCcC-cccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeC
Confidence 3789999995 45788888764 898744 679998899999998852 233457899999863
No 465
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.06 E-value=0.74 Score=53.45 Aligned_cols=38 Identities=13% Similarity=0.011 Sum_probs=29.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEech
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVG 357 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~-g~~t~v~~~d 357 (722)
.-++++.|-||+|||++|.+++...-.. |.++-.++..
T Consensus 31 Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~e 69 (509)
T PRK09302 31 GRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFE 69 (509)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 4589999999999999999987543333 6777777653
No 466
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.03 E-value=0.2 Score=56.61 Aligned_cols=26 Identities=38% Similarity=0.524 Sum_probs=23.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
--|+|+|.||+|||++|+.|++.+++
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~ 142 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNV 142 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCC
Confidence 46999999999999999999988753
No 467
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.02 E-value=0.46 Score=52.86 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=28.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcC--CceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g--~~t~v~~~ 356 (722)
.+-.++++|.||+|||++++.+.+.+...+ .....+|.
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~ 93 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC 93 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC
Confidence 444678999999999999999999886543 44444543
No 468
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.00 E-value=0.31 Score=54.92 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=23.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
.|.-|+|.|.||+|||++|++++..++.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~ 205 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTA 205 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3556889999999999999999987653
No 469
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.00 E-value=0.72 Score=45.05 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=54.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH--hhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL--KHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 398 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~--~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~ 398 (722)
-++.++|..|+|||||.+.|+..+.-..-. ..++..+.... .........|..+ =..+.+++..+|+..+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~~~~~~~i~~~~q-LS~G~~qrl~laral~~----- 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDGKEVSFASPRDARRAGIAMVYQ-LSVGERQMVEIARALAR----- 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEECCcCCHHHHHhcCeEEEEe-cCHHHHHHHHHHHHHhc-----
Confidence 479999999999999999998654322111 12222111000 0000000111111 22233455566666544
Q ss_pred HhcCCeEEEEeCCCC--CHHHHHHHHHH----HcCCceEEEE
Q 004941 399 MHEGGQVGIFDATNS--SRKRRNMLMKM----AEGNCKIIFL 434 (722)
Q Consensus 399 l~~~G~vVIvDAtn~--~~~~R~~~~~l----~~~~~~vifl 434 (722)
+-.++|+|-.+. ....++.+.++ .+.+..++++
T Consensus 100 ---~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~ 138 (163)
T cd03216 100 ---NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFI 138 (163)
T ss_pred ---CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 678999998764 45656655554 2335544444
No 470
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=92.99 E-value=0.16 Score=49.92 Aligned_cols=104 Identities=20% Similarity=0.224 Sum_probs=55.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHH----hhcCCceEEE----echhhHHHhhcCCCCCCCCC--CCCHHHHHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYL----RWLGHDTKHF----NVGKYRRLKHGVNQSADFFR--ADNPEGMEARNEVAALA 391 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L----~~~g~~t~v~----~~ddyRr~~~g~~~~~~~~~--~~~~~~~~~~~~va~~~ 391 (722)
-|.++|.|.+|||||-.+|...- +|.|.-.+.. ..++..=... +- .++|. ...++ +++++..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lv--Dl-PG~ysl~~~s~e-----e~v~~~~ 73 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELV--DL-PGIYSLSSKSEE-----ERVARDY 73 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEE--E-----SSSSSSSHH-----HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEE--EC-CCcccCCCCCcH-----HHHHHHH
Confidence 47899999999999999998443 2455444421 1111000000 00 12221 12221 1333333
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEe
Q 004941 392 MEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETIC 438 (722)
Q Consensus 392 l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c 438 (722)
+. .=.-..-++|+||++..+. -....++.+.|.+++++--.+
T Consensus 74 l~----~~~~D~ii~VvDa~~l~r~-l~l~~ql~e~g~P~vvvlN~~ 115 (156)
T PF02421_consen 74 LL----SEKPDLIIVVVDATNLERN-LYLTLQLLELGIPVVVVLNKM 115 (156)
T ss_dssp HH----HTSSSEEEEEEEGGGHHHH-HHHHHHHHHTTSSEEEEEETH
T ss_pred Hh----hcCCCEEEEECCCCCHHHH-HHHHHHHHHcCCCEEEEEeCH
Confidence 22 0011367999999996443 355666678899887776443
No 471
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=92.98 E-value=0.12 Score=54.60 Aligned_cols=38 Identities=21% Similarity=0.087 Sum_probs=34.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+++++|-+|.||||+|..|+..+...|.++-+++.|--
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 68899999999999999999999999999999988753
No 472
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.98 E-value=0.19 Score=61.85 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=34.9
Q ss_pred CCccE-EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 317 EHRHL-AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 317 ~~~~~-lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
+.+|. +++|+|.||+|||.+|++|++.|..-......+|+.+|-
T Consensus 592 ~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~ 636 (852)
T TIGR03345 592 PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQ 636 (852)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhh
Confidence 34566 689999999999999999999986444455678887773
No 473
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=92.97 E-value=0.082 Score=59.30 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=27.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEE
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 353 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v 353 (722)
=|++.|-||+||||+|++||+++...|.=++.
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy~~~GkiVKT 296 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFYASQGKIVKT 296 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHHHhcCcEEee
Confidence 48889999999999999999999887754443
No 474
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.95 E-value=0.13 Score=55.31 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=28.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
.+-.+|.++|.||||||||...|.+.|... .++-++
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEE
Confidence 467899999999999999999999887533 344444
No 475
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=92.95 E-value=0.12 Score=48.29 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=18.1
Q ss_pred EEEEccCCCChHHHHHHHHH
Q 004941 323 IVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~ 342 (722)
|+++|.||+||||+..+|..
T Consensus 3 i~~~G~~~~GKStl~~~l~~ 22 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVD 22 (159)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998863
No 476
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=92.92 E-value=0.16 Score=48.38 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=18.5
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 004941 323 IVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~ 343 (722)
|+++|.+|+||||+..++...
T Consensus 2 i~iiG~~~~GKssli~~~~~~ 22 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLG 22 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 689999999999999998643
No 477
>PRK07004 replicative DNA helicase; Provisional
Probab=92.92 E-value=0.88 Score=52.28 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=64.2
Q ss_pred hccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechhhH-----HHhhcCC-CC-CCCC-CCCCHH
Q 004941 309 ADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYR-----RLKHGVN-QS-ADFF-RADNPE 379 (722)
Q Consensus 309 ~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~-~g~~t~v~~~ddyR-----r~~~g~~-~~-~~~~-~~~~~~ 379 (722)
.|.+++.- .+.-+|++.|-||+|||++|..++..... .+..+-+|+..--. |...... -+ ..+. ..-+.+
T Consensus 203 LD~~t~G~-~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~~~v~~~~i~~g~l~~~ 281 (460)
T PRK07004 203 LDRMTSGM-HGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDE 281 (460)
T ss_pred hcccccCC-CCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhhcCCCHHHHhcCCCCHH
Confidence 34555433 34558999999999999999999987653 46777777653211 1111110 00 0011 112333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEE
Q 004941 380 GMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLE 435 (722)
Q Consensus 380 ~~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~-~R~~~~~l-~~~-~~~viflE 435 (722)
.+..+.+.+.. |. .-...|.|..+.+.. -|..++.+ .+. +..+++|.
T Consensus 282 e~~~~~~a~~~--------l~-~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviID 331 (460)
T PRK07004 282 DWPKLTHAVQK--------MS-EAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIID 331 (460)
T ss_pred HHHHHHHHHHH--------Hh-cCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 33333333322 32 245667666666654 47777777 333 46777765
No 478
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.91 E-value=0.67 Score=49.27 Aligned_cols=27 Identities=26% Similarity=0.119 Sum_probs=23.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
-+|+++|-+||||||+.++|..++...
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~ 107 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTP 107 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCC
Confidence 379999999999999999998887543
No 479
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=92.91 E-value=1.2 Score=57.03 Aligned_cols=28 Identities=25% Similarity=0.138 Sum_probs=24.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
...+|.++|.+|.||||||++++..+..
T Consensus 206 ~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 206 EVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 4568999999999999999999887654
No 480
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.91 E-value=0.83 Score=45.24 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.-++.++|.+||||||+.+.|+..+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34799999999999999999997653
No 481
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=92.91 E-value=0.14 Score=54.37 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=33.6
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCc--eEEEech
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD--TKHFNVG 357 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~--t~v~~~d 357 (722)
+++|++|-+.|-||+||||+|+.|+..|..-+.. ++++-+|
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmD 121 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMD 121 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecc
Confidence 7899999999999999999999999998744333 5666554
No 482
>PRK06851 hypothetical protein; Provisional
Probab=92.91 E-value=0.14 Score=56.89 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=31.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
...+++|.|.||+||||+.++|.+.+...|.++..+
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~ 64 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFL 64 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 456899999999999999999999998778777766
No 483
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.90 E-value=0.19 Score=52.19 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=27.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
-+++++|.||+||||+|.+++..+-..|.++..++.
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 389999999999999997777665445666666654
No 484
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=92.90 E-value=0.62 Score=46.45 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.8
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~ 343 (722)
-|+++|.+++|||||..+|...
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~ 25 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQ 25 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 485
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=92.89 E-value=0.18 Score=55.43 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=36.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
++..+|+++|.+|+||||++..|+..|...|.++-++|.|-.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~ 70 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPK 70 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeec
Confidence 355678888999999999999999999989999999988644
No 486
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.84 E-value=0.84 Score=43.74 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=54.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 400 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~ 400 (722)
-++.++|.+|+||||+.+.|+..+.-.. -...++. .+ ...|..+ -..+.+++..+|+.++.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~-G~i~~~~--~~--------~i~~~~~-lS~G~~~rv~laral~~------- 87 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDE-GIVTWGS--TV--------KIGYFEQ-LSGGEKMRLALAKLLLE------- 87 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCc-eEEEECC--eE--------EEEEEcc-CCHHHHHHHHHHHHHhc-------
Confidence 4789999999999999999987653211 1112221 00 0111111 22334555566666554
Q ss_pred cCCeEEEEeCCCC--CHHHHHHHHHH-HcCCceEEEE
Q 004941 401 EGGQVGIFDATNS--SRKRRNMLMKM-AEGNCKIIFL 434 (722)
Q Consensus 401 ~~G~vVIvDAtn~--~~~~R~~~~~l-~~~~~~vifl 434 (722)
+-.++|+|-.+. ....++.+.++ .+.+..++++
T Consensus 88 -~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~ 123 (144)
T cd03221 88 -NPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILV 123 (144)
T ss_pred -CCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 778999998764 46667777766 4444434443
No 487
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.83 E-value=0.2 Score=60.83 Aligned_cols=39 Identities=23% Similarity=0.419 Sum_probs=31.2
Q ss_pred CccE-EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 318 HRHL-AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~-lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.+|. .++|+|.||+|||++|+.|++.++ .+...+|+.+|
T Consensus 481 ~~p~~~~lf~Gp~GvGKT~lA~~la~~l~---~~~~~~d~se~ 520 (731)
T TIGR02639 481 NKPVGSFLFTGPTGVGKTELAKQLAEALG---VHLERFDMSEY 520 (731)
T ss_pred CCCceeEEEECCCCccHHHHHHHHHHHhc---CCeEEEeCchh
Confidence 4555 689999999999999999999874 45566777666
No 488
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=92.74 E-value=0.15 Score=49.71 Aligned_cols=37 Identities=30% Similarity=0.263 Sum_probs=33.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
+.++.+-.|+||||+|..|+..|...|.++-++|.|-
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~ 38 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADL 38 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 5677889999999999999999999999999998753
No 489
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=0.29 Score=57.91 Aligned_cols=40 Identities=25% Similarity=0.294 Sum_probs=31.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 363 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~ 363 (722)
-+++|+|.||.|||.|++.+|+.|+.. -..++.|-.|...
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~Rk---fvR~sLGGvrDEA 390 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRK---FVRISLGGVRDEA 390 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCC---EEEEecCccccHH
Confidence 379999999999999999999997654 3346666666643
No 490
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.73 E-value=0.47 Score=52.15 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.+-.++++|.||+|||++++.+.+.+.
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 344689999999999999999998875
No 491
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=92.66 E-value=0.095 Score=61.10 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=26.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
++.+++|+|.||+||||||+.|++.|...
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 45699999999999999999999998765
No 492
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=92.66 E-value=0.15 Score=56.80 Aligned_cols=36 Identities=25% Similarity=0.138 Sum_probs=32.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
.+.+|.++|.|||||||+..+|.+.|...|+++-++
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~i 239 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLI 239 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 456999999999999999999999999888888777
No 493
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.63 E-value=2.7 Score=48.16 Aligned_cols=134 Identities=12% Similarity=0.154 Sum_probs=70.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh--cCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 400 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~--~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~ 400 (722)
++++|-+|+|||+|+++++.++.. .+.++..++..++.+... ..+.. ....++++.+.+.
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~-----------------~~l~~-~~~~~~~~~~~~~ 205 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAV-----------------DILQK-THKEIEQFKNEIC 205 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH-----------------HHHHH-hhhHHHHHHHHhc
Confidence 688999999999999999998764 356666666544422110 00000 0011222222333
Q ss_pred cCCeEEEEeCCCCC---HHHHHHHHHH----HcCCceEEEEEEEeCCHH--HHHHHHHHhhhcCCC--CCCCCChHHHHH
Q 004941 401 EGGQVGIFDATNSS---RKRRNMLMKM----AEGNCKIIFLETICNDRD--IIERNIRLKIQQSPD--YAEEPDFEAGLQ 469 (722)
Q Consensus 401 ~~G~vVIvDAtn~~---~~~R~~~~~l----~~~~~~viflE~~c~d~~--~i~~ri~~r~~~~pd--~~~~~d~e~a~~ 469 (722)
.-.++|+|..... ....+.++.+ ...+-. +++-+...+.+ .+..|+..|-..+.- ... ++.++..+
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~-iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~-pd~e~r~~ 282 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQ-LFFSSDKSPELLNGFDNRLITRFNMGLSIAIQK-LDNKTATA 282 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCc-EEEECCCCHHHHhhccHHHHHHHhCCceeccCC-cCHHHHHH
Confidence 3568899988433 3445555554 333433 33333333222 245777776542221 222 25565555
Q ss_pred HHHHHHHh
Q 004941 470 DFKNRLAN 477 (722)
Q Consensus 470 df~~Ri~~ 477 (722)
-+.++++.
T Consensus 283 iL~~~~~~ 290 (450)
T PRK14087 283 IIKKEIKN 290 (450)
T ss_pred HHHHHHHh
Confidence 55555553
No 494
>PRK08840 replicative DNA helicase; Provisional
Probab=92.63 E-value=1.3 Score=50.96 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=64.6
Q ss_pred ccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhhH-----HHhhcCC-CC-CCCCC-CCCHHH
Q 004941 310 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYR-----RLKHGVN-QS-ADFFR-ADNPEG 380 (722)
Q Consensus 310 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~-~~g~~t~v~~~ddyR-----r~~~g~~-~~-~~~~~-~~~~~~ 380 (722)
|.+++.. ++.-+|++.|-||.|||++|-.|+.... ..+..+-+|+..--. |...... .+ ..+.. .-+.+.
T Consensus 208 D~~~~G~-~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e 286 (464)
T PRK08840 208 NKKTAGL-QGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDDED 286 (464)
T ss_pred HHhhcCC-CCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHHhcCCCCHHH
Confidence 3444333 3455899999999999999998887764 346777777663111 1111100 00 01111 123333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEE
Q 004941 381 MEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLE 435 (722)
Q Consensus 381 ~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~-~R~~~~~l-~~~-~~~viflE 435 (722)
+..+.+.+.. +.+.....|.|..+.+.. -|..++.+ .++ ++.+++|.
T Consensus 287 ~~~~~~a~~~--------l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvID 336 (464)
T PRK08840 287 WARISSTMGI--------LMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVD 336 (464)
T ss_pred HHHHHHHHHH--------HHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 4433333322 322446777777666655 47777777 443 47777775
No 495
>PF12846 AAA_10: AAA-like domain
Probab=92.60 E-value=0.16 Score=53.48 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=35.3
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEec-hhhHHH
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRRL 362 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~-ddyRr~ 362 (722)
++++|-+||||||+++.+...+-..|....+||. ++|++.
T Consensus 4 ~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~~ 44 (304)
T PF12846_consen 4 TLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSPL 44 (304)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHHH
Confidence 6789999999999999999999889999999987 667653
No 496
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.59 E-value=1.6 Score=45.86 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
.|+-++++|-+||||||+...|-..+...
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~ 40 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHK 40 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhccc
Confidence 46779999999999999999998777543
No 497
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.59 E-value=1.2 Score=52.12 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=24.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.-+-+++++|.||+||||+|+.|++.|.
T Consensus 34 rl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 34 RLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred CCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 3456889999999999999999999985
No 498
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=0.25 Score=56.60 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
.=|.=|+|+|.||+|||-|||++|-.
T Consensus 335 KLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 335 KLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cCCCceEEeCCCCCchhHHHHHhhcc
Confidence 34667999999999999999999954
No 499
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.58 E-value=0.46 Score=50.13 Aligned_cols=117 Identities=12% Similarity=0.041 Sum_probs=60.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE-echhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF-NVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 397 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~-~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~ 397 (722)
....|+++|-+||||||+.++|.+++.....+..++ +..++ ...+... ..+....... ...++.+.+|
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~--~l~~~~~-~~~~~~~~~~---~~~~~l~~~L----- 194 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL--RLPGPNQ-IQIQTRRDEI---SYEDLLKSAL----- 194 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S----SCSSE-EEEEEETTTB---SHHHHHHHHT-----
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccce--eecccce-EEEEeecCcc---cHHHHHHHHh-----
Confidence 356899999999999999999998876552333222 23223 1111110 0111110111 1123333333
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHH
Q 004941 398 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 450 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~ 450 (722)
..+-..+|++=.-..... .. .+....|..+.+--+++++....-.|+..
T Consensus 195 --R~~pD~iiigEiR~~e~~-~~-~~a~~tGh~~~~tT~Ha~s~~~~i~Rl~~ 243 (270)
T PF00437_consen 195 --RQDPDVIIIGEIRDPEAA-EA-IQAANTGHLGSLTTLHANSAEDAIERLAD 243 (270)
T ss_dssp --TS--SEEEESCE-SCHHH-HH-HHHHHTT-EEEEEEEE-SSHHHHHHHHHH
T ss_pred --cCCCCcccccccCCHhHH-HH-HHhhccCCceeeeeeecCCHHHHHHHHHH
Confidence 234566776555544333 33 44556677765777888888877777764
No 500
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=92.55 E-value=0.12 Score=52.65 Aligned_cols=27 Identities=41% Similarity=0.377 Sum_probs=24.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
|+.|.++|.+||||||+.+.|.+.+..
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 578999999999999999999988753
Done!