Query 004941
Match_columns 722
No_of_seqs 504 out of 2910
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 10:30:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2axn_A 6-phosphofructo-2-kinas 100.0 2.6E-70 9.1E-75 623.7 44.0 395 317-720 32-434 (520)
2 1bif_A 6-phosphofructo-2-kinas 100.0 1.2E-68 4.2E-73 603.2 44.0 395 317-720 36-437 (469)
3 1h2e_A Phosphatase, YHFR; hydr 100.0 9.2E-34 3.1E-38 285.4 20.0 187 529-719 2-196 (207)
4 2a6p_A Possible phosphoglycera 100.0 2.1E-33 7E-38 283.4 19.9 190 521-719 3-197 (208)
5 1fzt_A Phosphoglycerate mutase 100.0 1.9E-33 6.7E-38 283.5 19.2 188 522-712 1-201 (211)
6 3kkk_A Phosphoglycerate mutase 100.0 3.5E-32 1.2E-36 282.2 17.4 191 524-716 7-234 (258)
7 3gp3_A 2,3-bisphosphoglycerate 100.0 9.8E-32 3.4E-36 278.8 19.2 190 525-716 6-232 (257)
8 3hjg_A Putative alpha-ribazole 100.0 4E-32 1.4E-36 274.9 15.3 188 525-720 2-198 (213)
9 1e58_A Phosphoglycerate mutase 100.0 1.1E-31 3.7E-36 277.2 18.1 182 528-711 2-220 (249)
10 4emb_A 2,3-bisphosphoglycerate 100.0 1.4E-31 4.8E-36 280.7 18.0 191 527-719 26-253 (274)
11 3d8h_A Glycolytic phosphoglyce 100.0 3.8E-31 1.3E-35 276.7 20.4 185 528-714 20-241 (267)
12 2hhj_A Bisphosphoglycerate mut 100.0 2.6E-31 8.7E-36 277.9 18.3 183 526-710 1-224 (267)
13 1qhf_A Protein (phosphoglycera 100.0 3.5E-31 1.2E-35 272.0 17.7 183 529-714 1-220 (240)
14 1yfk_A Phosphoglycerate mutase 100.0 5E-31 1.7E-35 274.9 18.3 183 527-711 2-223 (262)
15 4eo9_A 2,3-bisphosphoglycerate 100.0 3.2E-31 1.1E-35 277.3 14.6 185 528-714 27-246 (268)
16 2qni_A AGR_C_517P, uncharacter 100.0 2.3E-30 8E-35 263.6 19.6 178 523-710 16-199 (219)
17 1rii_A 2,3-bisphosphoglycerate 100.0 8.4E-31 2.9E-35 274.3 16.0 181 528-710 4-219 (265)
18 1v37_A Phosphoglycerate mutase 100.0 2.4E-30 8.1E-35 254.7 12.7 164 529-714 1-166 (177)
19 3r7a_A Phosphoglycerate mutase 100.0 4.4E-30 1.5E-34 263.1 14.5 182 527-718 12-222 (237)
20 3e9c_A ZGC:56074; histidine ph 100.0 9.2E-30 3.1E-34 265.8 14.2 176 527-710 2-227 (265)
21 3f3k_A Uncharacterized protein 100.0 1.4E-29 4.9E-34 264.2 12.5 194 526-719 3-253 (265)
22 3dcy_A Regulator protein; OMIM 100.0 2.3E-29 7.8E-34 264.2 13.5 179 523-709 3-248 (275)
23 3d4i_A STS-2 protein; PGM, 2H- 100.0 1.2E-28 4.1E-33 257.8 13.6 187 525-716 6-251 (273)
24 3c7t_A Ecdysteroid-phosphate p 100.0 6.7E-28 2.3E-32 251.0 17.1 180 527-710 3-237 (263)
25 3mbk_A Ubiquitin-associated an 99.9 3.4E-27 1.2E-31 245.8 11.4 183 529-715 1-241 (264)
26 3mxo_A Serine/threonine-protei 99.9 1.7E-25 5.8E-30 223.9 17.6 171 525-719 7-189 (202)
27 3eoz_A Putative phosphoglycera 99.9 3.5E-26 1.2E-30 231.4 9.3 172 526-718 19-200 (214)
28 1ujc_A Phosphohistidine phosph 99.9 4.7E-22 1.6E-26 192.4 18.7 145 529-719 1-150 (161)
29 2rfl_A Putative phosphohistidi 99.8 2.1E-21 7.1E-26 190.0 11.1 137 528-710 8-152 (173)
30 3fjy_A Probable MUTT1 protein; 99.8 4.8E-18 1.6E-22 185.1 15.4 158 525-719 179-349 (364)
31 1ac0_A Glucoamylase; hydrolase 99.7 1.4E-18 4.8E-23 157.7 6.8 89 28-120 4-96 (108)
32 2z0b_A GDE5, KIAA1434, putativ 99.7 5.3E-18 1.8E-22 159.1 10.3 90 27-118 5-108 (131)
33 3f2i_A ALR0221 protein; alpha- 99.7 2.3E-17 7.8E-22 161.8 13.9 144 529-710 1-144 (172)
34 3bmv_A Cyclomaltodextrin gluca 99.6 1E-15 3.5E-20 179.8 10.5 96 27-126 580-682 (683)
35 4hbz_A Putative phosphohistidi 99.6 3.9E-15 1.3E-19 147.7 12.6 137 527-709 18-165 (186)
36 1cyg_A Cyclodextrin glucanotra 99.6 1.3E-15 4.3E-20 178.9 10.5 97 27-126 576-679 (680)
37 1d3c_A Cyclodextrin glycosyltr 99.6 1.4E-15 4.9E-20 178.7 10.3 96 27-126 583-685 (686)
38 1vem_A Beta-amylase; beta-alph 99.5 4.3E-14 1.5E-18 160.4 10.2 91 27-120 416-509 (516)
39 2vn4_A Glucoamylase; hydrolase 99.5 7.6E-14 2.6E-18 161.1 10.0 89 27-119 493-585 (599)
40 1qho_A Alpha-amylase; glycosid 99.4 2.1E-13 7.3E-18 160.2 10.4 91 27-120 578-676 (686)
41 1gcy_A Glucan 1,4-alpha-maltot 99.4 2.3E-14 7.9E-19 163.4 0.0 91 27-118 427-519 (527)
42 3zvl_A Bifunctional polynucleo 99.4 2.7E-12 9.1E-17 142.3 13.9 138 317-496 255-396 (416)
43 1ly1_A Polynucleotide kinase; 99.3 4.1E-12 1.4E-16 122.3 11.8 120 320-452 2-127 (181)
44 2rhm_A Putative kinase; P-loop 99.3 7.1E-11 2.4E-15 115.1 18.6 123 319-453 4-127 (193)
45 3a4m_A L-seryl-tRNA(SEC) kinas 99.2 1.2E-10 4.2E-15 120.6 15.8 116 319-451 3-120 (260)
46 1ltq_A Polynucleotide kinase; 99.2 9.9E-11 3.4E-15 122.9 13.8 120 320-452 2-127 (301)
47 1gvn_B Zeta; postsegregational 99.1 2.5E-10 8.5E-15 120.4 12.9 153 317-478 30-188 (287)
48 2yvu_A Probable adenylyl-sulfa 99.1 5.6E-10 1.9E-14 108.9 14.3 120 318-449 11-131 (186)
49 1m8p_A Sulfate adenylyltransfe 99.1 5.6E-10 1.9E-14 128.5 15.9 140 295-447 371-512 (573)
50 3uie_A Adenylyl-sulfate kinase 99.1 1.2E-09 4E-14 108.3 13.2 118 318-448 23-140 (200)
51 1qhx_A CPT, protein (chloramph 99.0 1.3E-09 4.4E-14 105.1 13.1 123 320-451 3-133 (178)
52 3t61_A Gluconokinase; PSI-biol 99.0 8.3E-10 2.8E-14 109.2 10.3 113 320-452 18-132 (202)
53 1m7g_A Adenylylsulfate kinase; 99.0 2.1E-09 7.1E-14 107.4 12.9 117 319-447 24-148 (211)
54 1x6v_B Bifunctional 3'-phospho 99.0 2.2E-09 7.4E-14 124.2 14.5 121 317-449 49-170 (630)
55 2p5t_B PEZT; postsegregational 99.0 1.2E-09 4.1E-14 112.6 11.1 125 317-452 29-158 (253)
56 2gks_A Bifunctional SAT/APS ki 99.0 1.4E-09 4.9E-14 124.4 12.9 144 292-449 344-488 (546)
57 2c95_A Adenylate kinase 1; tra 99.0 4.3E-09 1.5E-13 102.7 14.1 157 319-496 8-176 (196)
58 2bwj_A Adenylate kinase 5; pho 99.0 7.9E-09 2.7E-13 101.0 15.4 157 319-496 11-179 (199)
59 3vaa_A Shikimate kinase, SK; s 99.0 1.3E-09 4.3E-14 107.9 8.9 141 320-479 25-169 (199)
60 3trf_A Shikimate kinase, SK; a 98.9 6.5E-10 2.2E-14 108.0 6.6 139 320-480 5-148 (185)
61 2vli_A Antibiotic resistance p 98.9 3.6E-09 1.2E-13 102.3 11.3 116 319-451 4-125 (183)
62 2cdn_A Adenylate kinase; phosp 98.9 1.7E-09 5.9E-14 106.8 8.7 156 317-496 17-184 (201)
63 1qf9_A UMP/CMP kinase, protein 98.9 8.5E-09 2.9E-13 99.9 13.4 148 319-484 5-158 (194)
64 1tev_A UMP-CMP kinase; ploop, 98.9 1.1E-08 3.9E-13 99.2 14.2 148 319-484 2-161 (196)
65 3lw7_A Adenylate kinase relate 98.9 9.9E-09 3.4E-13 97.3 12.6 134 321-471 2-138 (179)
66 4eun_A Thermoresistant glucoki 98.9 6.5E-09 2.2E-13 102.9 10.3 111 319-451 28-145 (200)
67 1knq_A Gluconate kinase; ALFA/ 98.8 1.1E-08 3.7E-13 98.5 10.6 112 319-451 7-124 (175)
68 1ukz_A Uridylate kinase; trans 98.8 1.2E-07 4.3E-12 93.3 18.1 120 318-452 13-142 (203)
69 2pez_A Bifunctional 3'-phospho 98.8 3.5E-08 1.2E-12 95.5 13.7 118 319-448 4-122 (179)
70 2iyv_A Shikimate kinase, SK; t 98.8 8.9E-09 3E-13 99.9 8.0 135 322-479 4-141 (184)
71 3umf_A Adenylate kinase; rossm 98.7 1.8E-07 6.1E-12 94.8 16.3 150 314-486 23-182 (217)
72 3cm0_A Adenylate kinase; ATP-b 98.7 2.1E-08 7.1E-13 97.2 9.0 115 319-452 3-127 (186)
73 1aky_A Adenylate kinase; ATP:A 98.7 9.1E-08 3.1E-12 95.8 13.9 119 319-452 3-133 (220)
74 3dl0_A Adenylate kinase; phosp 98.7 1E-08 3.6E-13 102.2 6.7 161 322-496 2-197 (216)
75 3fb4_A Adenylate kinase; psych 98.7 1.8E-08 6E-13 100.4 7.6 159 322-496 2-197 (216)
76 3kb2_A SPBC2 prophage-derived 98.7 1.6E-07 5.6E-12 89.2 13.4 35 322-361 3-37 (173)
77 3be4_A Adenylate kinase; malar 98.7 3.9E-08 1.3E-12 98.6 9.5 117 320-452 5-133 (217)
78 3tlx_A Adenylate kinase 2; str 98.7 5.3E-08 1.8E-12 99.8 10.3 161 318-496 27-226 (243)
79 1kht_A Adenylate kinase; phosp 98.7 4.3E-08 1.5E-12 94.9 8.9 40 320-359 3-42 (192)
80 2pt5_A Shikimate kinase, SK; a 98.6 4.5E-08 1.5E-12 93.3 7.9 134 322-478 2-137 (168)
81 1zd8_A GTP:AMP phosphotransfer 98.6 6.1E-08 2.1E-12 97.7 7.4 156 319-496 6-198 (227)
82 2xb4_A Adenylate kinase; ATP-b 98.6 1.7E-07 5.9E-12 94.5 10.7 117 322-452 2-127 (223)
83 1via_A Shikimate kinase; struc 98.6 5E-08 1.7E-12 94.1 6.2 133 322-479 6-139 (175)
84 1e6c_A Shikimate kinase; phosp 98.6 1.1E-07 3.9E-12 90.7 8.5 38 322-364 4-41 (173)
85 3cr8_A Sulfate adenylyltranfer 98.5 2.6E-07 8.9E-12 105.8 11.9 119 318-449 367-487 (552)
86 3nwj_A ATSK2; P loop, shikimat 98.5 1.5E-07 5E-12 97.4 8.2 138 321-480 49-199 (250)
87 1nks_A Adenylate kinase; therm 98.5 3.7E-07 1.2E-11 88.3 10.5 39 321-359 2-40 (194)
88 3sr0_A Adenylate kinase; phosp 98.5 2.1E-06 7.2E-11 86.1 14.7 146 321-486 1-173 (206)
89 1ak2_A Adenylate kinase isoenz 98.4 2.5E-07 8.5E-12 93.7 7.5 37 318-359 14-50 (233)
90 2plr_A DTMP kinase, probable t 98.4 2.7E-06 9.3E-11 83.5 14.6 30 319-348 3-32 (213)
91 1zuh_A Shikimate kinase; alpha 98.4 3.1E-07 1.1E-11 87.8 7.4 39 322-365 9-47 (168)
92 1e4v_A Adenylate kinase; trans 98.4 5.7E-07 2E-11 89.6 9.0 35 322-361 2-36 (214)
93 1nn5_A Similar to deoxythymidy 98.4 6.1E-06 2.1E-10 81.3 15.7 37 319-355 8-44 (215)
94 2ze6_A Isopentenyl transferase 98.4 1.7E-06 5.7E-11 89.2 11.5 34 321-359 2-35 (253)
95 2bdt_A BH3686; alpha-beta prot 98.4 2.9E-06 9.9E-11 82.5 12.6 112 321-451 3-122 (189)
96 1zak_A Adenylate kinase; ATP:A 98.3 5.9E-07 2E-11 90.0 7.3 36 319-359 4-39 (222)
97 1kag_A SKI, shikimate kinase I 98.3 4.4E-07 1.5E-11 86.7 5.9 39 320-363 4-42 (173)
98 3iij_A Coilin-interacting nucl 98.3 2.6E-07 8.9E-12 89.3 4.3 40 319-363 10-49 (180)
99 4eaq_A DTMP kinase, thymidylat 98.3 1.4E-05 4.8E-10 81.1 16.8 33 319-352 25-57 (229)
100 2pbr_A DTMP kinase, thymidylat 98.2 2.7E-05 9.3E-10 75.1 15.7 29 322-350 2-30 (195)
101 2qor_A Guanylate kinase; phosp 98.2 2.3E-06 8E-11 84.6 7.6 27 319-345 11-37 (204)
102 1y63_A LMAJ004144AAA protein; 98.2 3.1E-06 1.1E-10 82.4 8.4 38 319-361 9-47 (184)
103 1g8f_A Sulfate adenylyltransfe 98.2 9.6E-07 3.3E-11 100.1 5.0 68 291-358 366-435 (511)
104 3gmt_A Adenylate kinase; ssgci 98.1 4.6E-06 1.6E-10 85.1 9.2 148 318-486 6-187 (230)
105 2z0h_A DTMP kinase, thymidylat 98.1 6.7E-05 2.3E-09 72.7 16.1 32 321-352 1-32 (197)
106 1uj2_A Uridine-cytidine kinase 98.1 1.3E-05 4.3E-10 82.1 10.8 43 318-360 20-67 (252)
107 3hdt_A Putative kinase; struct 98.1 2.1E-05 7.4E-10 79.7 12.0 43 319-366 13-55 (223)
108 3fdi_A Uncharacterized protein 98.1 9.5E-06 3.2E-10 80.8 9.1 37 320-361 6-42 (201)
109 2wwf_A Thymidilate kinase, put 98.0 3.7E-06 1.2E-10 82.9 5.4 37 319-355 9-45 (212)
110 2f6r_A COA synthase, bifunctio 98.0 5.7E-05 1.9E-09 79.0 14.7 38 318-361 73-110 (281)
111 1vht_A Dephospho-COA kinase; s 98.0 5.6E-05 1.9E-09 75.1 13.0 38 319-362 3-40 (218)
112 2grj_A Dephospho-COA kinase; T 98.0 2.7E-05 9.2E-10 77.1 10.5 41 317-362 9-49 (192)
113 4edh_A DTMP kinase, thymidylat 98.0 0.0005 1.7E-08 69.0 19.7 36 319-354 5-40 (213)
114 2laa_A Beta/alpha-amylase; SBD 98.0 1.5E-05 5.2E-10 71.2 7.4 78 27-118 3-81 (104)
115 3a8t_A Adenylate isopentenyltr 97.9 5.7E-05 2E-09 81.1 13.3 43 312-359 32-74 (339)
116 4tmk_A Protein (thymidylate ki 97.9 0.00068 2.3E-08 68.1 20.0 30 320-349 3-32 (213)
117 1zp6_A Hypothetical protein AT 97.9 7.6E-05 2.6E-09 72.2 12.6 119 319-451 8-126 (191)
118 3lv8_A DTMP kinase, thymidylat 97.9 0.00024 8.3E-09 72.6 16.4 36 319-354 26-62 (236)
119 3ake_A Cytidylate kinase; CMP 97.9 4.8E-05 1.6E-09 74.4 9.8 36 322-362 4-39 (208)
120 3crm_A TRNA delta(2)-isopenten 97.8 0.00011 3.6E-09 78.7 12.5 35 320-359 5-39 (323)
121 1jjv_A Dephospho-COA kinase; P 97.8 0.00021 7.2E-09 70.2 13.9 36 321-362 3-38 (206)
122 2jaq_A Deoxyguanosine kinase; 97.8 7.6E-05 2.6E-09 72.6 10.6 25 322-346 2-26 (205)
123 1uf9_A TT1252 protein; P-loop, 97.8 6E-05 2.1E-09 73.4 9.8 39 317-361 5-43 (203)
124 4i1u_A Dephospho-COA kinase; s 97.8 0.00027 9.2E-09 71.1 14.3 120 318-452 7-153 (210)
125 3tr0_A Guanylate kinase, GMP k 97.8 0.0001 3.5E-09 72.0 10.4 26 320-345 7-32 (205)
126 1gtv_A TMK, thymidylate kinase 97.7 1.4E-05 4.8E-10 78.8 4.1 32 322-353 2-33 (214)
127 4hlc_A DTMP kinase, thymidylat 97.7 0.0019 6.5E-08 64.3 19.4 33 321-354 3-35 (205)
128 4gp7_A Metallophosphoesterase; 97.7 0.00021 7.1E-09 68.8 11.9 130 319-477 8-140 (171)
129 2bbw_A Adenylate kinase 4, AK4 97.7 0.00031 1.1E-08 71.3 13.8 29 319-347 26-54 (246)
130 1q3t_A Cytidylate kinase; nucl 97.7 0.00055 1.9E-08 69.1 15.2 38 319-361 15-52 (236)
131 2h92_A Cytidylate kinase; ross 97.7 0.00071 2.4E-08 66.9 15.3 37 320-361 3-39 (219)
132 2qt1_A Nicotinamide riboside k 97.7 0.00014 4.7E-09 71.7 9.7 38 318-359 19-56 (207)
133 2if2_A Dephospho-COA kinase; a 97.6 6.4E-05 2.2E-09 73.7 7.1 35 322-362 3-37 (204)
134 3v9p_A DTMP kinase, thymidylat 97.6 0.00038 1.3E-08 70.7 12.8 36 319-354 24-63 (227)
135 3tau_A Guanylate kinase, GMP k 97.6 4.4E-05 1.5E-09 75.9 4.7 27 319-345 7-33 (208)
136 3r20_A Cytidylate kinase; stru 97.5 0.00064 2.2E-08 69.4 11.8 38 319-361 8-45 (233)
137 3ld9_A DTMP kinase, thymidylat 97.5 0.00012 4.2E-09 74.2 6.3 36 318-353 19-55 (223)
138 3a00_A Guanylate kinase, GMP k 97.5 0.00017 6E-09 70.0 7.2 25 321-345 2-26 (186)
139 3dm5_A SRP54, signal recogniti 97.4 0.00049 1.7E-08 76.5 10.7 43 319-361 99-141 (443)
140 4e22_A Cytidylate kinase; P-lo 97.3 0.0014 4.7E-08 67.1 11.6 38 319-361 26-63 (252)
141 1ex7_A Guanylate kinase; subst 97.3 0.00066 2.3E-08 66.9 8.6 23 323-345 4-26 (186)
142 1cke_A CK, MSSA, protein (cyti 97.1 0.0003 1E-08 69.9 4.9 37 320-361 5-41 (227)
143 1s96_A Guanylate kinase, GMP k 97.1 0.0025 8.7E-08 64.1 11.1 120 320-451 16-150 (219)
144 1a7j_A Phosphoribulokinase; tr 97.1 0.00028 9.7E-09 74.1 4.3 42 319-360 4-45 (290)
145 2j41_A Guanylate kinase; GMP, 97.1 0.0011 3.6E-08 64.7 7.9 25 320-344 6-30 (207)
146 3hjn_A DTMP kinase, thymidylat 97.0 0.0027 9.2E-08 62.8 10.7 34 321-354 1-34 (197)
147 3kl4_A SRP54, signal recogniti 97.0 0.0021 7.1E-08 71.4 10.8 44 318-361 95-138 (433)
148 2v54_A DTMP kinase, thymidylat 96.9 0.00046 1.6E-08 67.2 3.1 26 319-344 3-28 (204)
149 2j37_W Signal recognition part 96.8 0.0048 1.7E-07 69.7 11.4 43 318-360 99-141 (504)
150 1rz3_A Hypothetical protein rb 96.8 0.0014 4.8E-08 64.5 6.2 43 318-360 20-62 (201)
151 1vma_A Cell division protein F 96.8 0.0073 2.5E-07 63.9 12.0 43 318-360 102-144 (306)
152 2xxa_A Signal recognition part 96.7 0.0041 1.4E-07 69.1 9.9 43 318-360 98-141 (433)
153 3ec2_A DNA replication protein 96.7 0.0054 1.8E-07 58.7 9.4 40 320-359 38-78 (180)
154 3d3q_A TRNA delta(2)-isopenten 96.7 0.0029 1E-07 68.0 8.2 35 320-359 7-41 (340)
155 1kgd_A CASK, peripheral plasma 96.7 0.00063 2.1E-08 65.8 2.7 26 320-345 5-30 (180)
156 3tmk_A Thymidylate kinase; pho 96.6 0.0089 3E-07 60.1 10.5 28 319-346 4-31 (216)
157 3ch4_B Pmkase, phosphomevalona 96.6 0.037 1.3E-06 55.1 14.6 41 319-361 10-50 (202)
158 1zu4_A FTSY; GTPase, signal re 96.5 0.012 4.1E-07 62.6 11.3 43 318-360 103-145 (320)
159 3foz_A TRNA delta(2)-isopenten 96.5 0.0068 2.3E-07 64.3 9.0 35 319-358 9-43 (316)
160 2ffh_A Protein (FFH); SRP54, s 96.5 0.012 4.2E-07 65.0 11.4 42 319-360 97-138 (425)
161 3exa_A TRNA delta(2)-isopenten 96.4 0.0059 2E-07 65.0 8.3 35 320-359 3-37 (322)
162 3syl_A Protein CBBX; photosynt 96.4 0.022 7.5E-07 59.0 12.6 31 319-349 66-96 (309)
163 3t15_A Ribulose bisphosphate c 96.3 0.007 2.4E-07 63.3 8.1 40 317-359 33-72 (293)
164 1jbk_A CLPB protein; beta barr 96.3 0.012 4E-07 55.4 9.0 27 320-346 43-69 (195)
165 2qby_B CDC6 homolog 3, cell di 96.3 0.015 5E-07 62.1 10.7 38 319-356 44-89 (384)
166 1j8m_F SRP54, signal recogniti 96.3 0.012 4.3E-07 61.8 9.8 41 320-360 98-138 (297)
167 1odf_A YGR205W, hypothetical 3 96.3 0.0035 1.2E-07 65.8 5.5 43 317-359 28-73 (290)
168 3c8u_A Fructokinase; YP_612366 96.3 0.005 1.7E-07 60.7 6.3 42 318-359 20-61 (208)
169 3eph_A TRNA isopentenyltransfe 96.2 0.0091 3.1E-07 65.6 8.4 34 320-358 2-35 (409)
170 4a1f_A DNAB helicase, replicat 96.1 0.03 1E-06 60.1 11.4 118 310-437 37-165 (338)
171 2ocp_A DGK, deoxyguanosine kin 96.0 0.0032 1.1E-07 63.6 3.6 27 319-345 1-27 (241)
172 1p5z_B DCK, deoxycytidine kina 96.0 0.0015 5E-08 67.0 0.8 28 318-345 22-49 (263)
173 3tqc_A Pantothenate kinase; bi 96.0 0.0079 2.7E-07 64.1 6.4 43 317-359 89-133 (321)
174 1yrb_A ATP(GTP)binding protein 95.9 0.0074 2.5E-07 61.0 5.9 40 317-357 11-50 (262)
175 3e70_C DPA, signal recognition 95.9 0.032 1.1E-06 59.5 11.1 42 318-359 127-168 (328)
176 3lnc_A Guanylate kinase, GMP k 95.9 0.018 6E-07 57.5 8.5 25 320-344 27-52 (231)
177 3bos_A Putative DNA replicatio 95.9 0.0075 2.6E-07 59.4 5.5 40 320-359 52-91 (242)
178 1xjc_A MOBB protein homolog; s 95.9 0.007 2.4E-07 58.6 5.1 36 321-356 5-40 (169)
179 3ney_A 55 kDa erythrocyte memb 95.9 0.0083 2.8E-07 59.6 5.7 27 319-345 18-44 (197)
180 2v3c_C SRP54, signal recogniti 95.9 0.0031 1.1E-07 70.0 2.9 43 318-360 97-139 (432)
181 2v1u_A Cell division control p 95.8 0.03 1E-06 59.3 10.3 28 319-346 43-70 (387)
182 2yhs_A FTSY, cell division pro 95.8 0.021 7.2E-07 64.3 9.3 43 318-360 291-333 (503)
183 2chg_A Replication factor C sm 95.8 0.017 5.7E-07 55.7 7.4 26 323-348 41-66 (226)
184 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.067 2.3E-06 56.6 12.6 25 320-344 45-69 (322)
185 2cvh_A DNA repair and recombin 95.8 0.033 1.1E-06 54.3 9.5 36 320-358 20-55 (220)
186 3eie_A Vacuolar protein sortin 95.8 0.054 1.8E-06 57.0 11.8 35 319-356 50-84 (322)
187 1ls1_A Signal recognition part 95.7 0.045 1.5E-06 57.4 10.8 42 319-360 97-138 (295)
188 3asz_A Uridine kinase; cytidin 95.7 0.011 3.7E-07 57.9 5.7 38 319-359 5-42 (211)
189 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.039 1.3E-06 55.5 10.0 34 320-356 39-72 (262)
190 2p65_A Hypothetical protein PF 95.7 0.024 8.3E-07 53.2 7.9 27 320-346 43-69 (187)
191 3te6_A Regulatory protein SIR3 95.6 0.046 1.6E-06 58.1 10.7 148 318-479 43-215 (318)
192 1sq5_A Pantothenate kinase; P- 95.6 0.013 4.3E-07 61.8 6.3 42 318-359 78-121 (308)
193 1l8q_A Chromosomal replication 95.6 0.047 1.6E-06 57.3 10.7 38 322-359 39-76 (324)
194 1u94_A RECA protein, recombina 95.6 0.045 1.5E-06 59.1 10.7 37 320-356 63-99 (356)
195 2w58_A DNAI, primosome compone 95.6 0.01 3.5E-07 57.7 5.1 39 321-359 55-93 (202)
196 2z4s_A Chromosomal replication 95.6 0.085 2.9E-06 58.3 13.1 39 321-359 131-171 (440)
197 1fnn_A CDC6P, cell division co 95.6 0.16 5.3E-06 53.9 14.6 34 322-355 46-80 (389)
198 2px0_A Flagellar biosynthesis 95.5 0.0092 3.1E-07 62.8 4.7 42 319-360 104-146 (296)
199 2q6t_A DNAB replication FORK h 95.5 0.15 5E-06 56.4 14.4 117 310-436 191-318 (444)
200 1ofh_A ATP-dependent HSL prote 95.4 0.028 9.7E-07 57.8 8.0 37 320-359 50-86 (310)
201 2qp9_X Vacuolar protein sortin 95.4 0.059 2E-06 57.8 10.5 34 320-356 84-117 (355)
202 3h4m_A Proteasome-activating n 95.4 0.046 1.6E-06 55.9 9.3 27 320-346 51-77 (285)
203 3hr8_A Protein RECA; alpha and 95.3 0.087 3E-06 56.9 11.4 39 319-357 60-98 (356)
204 3p32_A Probable GTPase RV1496/ 95.2 0.017 5.9E-07 62.0 5.8 40 318-357 77-116 (355)
205 2vhj_A Ntpase P4, P4; non- hyd 95.2 0.049 1.7E-06 58.1 9.1 23 321-343 124-146 (331)
206 2kjq_A DNAA-related protein; s 95.2 0.015 5.1E-07 54.7 4.6 35 322-356 38-72 (149)
207 4b4t_M 26S protease regulatory 95.2 0.043 1.5E-06 60.9 9.0 29 319-347 214-242 (434)
208 1um8_A ATP-dependent CLP prote 95.2 0.022 7.5E-07 61.3 6.3 33 321-356 73-105 (376)
209 1rj9_A FTSY, signal recognitio 95.1 0.015 5.3E-07 61.3 4.9 41 319-359 101-141 (304)
210 3b9p_A CG5977-PA, isoform A; A 95.1 0.051 1.7E-06 56.0 8.8 26 320-345 54-79 (297)
211 3bh0_A DNAB-like replicative h 95.0 0.16 5.5E-06 53.5 12.5 37 320-356 68-104 (315)
212 1d2n_A N-ethylmaleimide-sensit 95.0 0.066 2.2E-06 54.6 9.1 28 318-345 62-89 (272)
213 4b4t_J 26S protease regulatory 95.0 0.043 1.5E-06 60.3 8.0 61 284-347 148-209 (405)
214 3b9q_A Chloroplast SRP recepto 95.0 0.019 6.6E-07 60.5 5.1 42 318-359 98-139 (302)
215 2zr9_A Protein RECA, recombina 95.0 0.078 2.7E-06 57.0 10.0 38 320-357 61-98 (349)
216 4b4t_L 26S protease subunit RP 94.9 0.051 1.8E-06 60.3 8.3 29 319-347 214-242 (437)
217 2qby_A CDC6 homolog 1, cell di 94.8 0.078 2.7E-06 55.9 9.5 38 319-356 44-84 (386)
218 2og2_A Putative signal recogni 94.8 0.021 7.2E-07 61.8 5.1 43 318-360 155-197 (359)
219 2r8r_A Sensor protein; KDPD, P 94.8 0.032 1.1E-06 56.6 5.9 41 318-358 4-44 (228)
220 1xp8_A RECA protein, recombina 94.8 0.19 6.4E-06 54.4 12.3 37 321-357 75-111 (366)
221 2jeo_A Uridine-cytidine kinase 94.8 0.034 1.2E-06 56.2 6.1 29 319-347 24-52 (245)
222 4b4t_K 26S protease regulatory 94.7 0.059 2E-06 59.6 8.4 28 320-347 206-233 (428)
223 4b4t_I 26S protease regulatory 94.7 0.06 2E-06 59.5 8.1 28 320-347 216-243 (437)
224 3d8b_A Fidgetin-like protein 1 94.7 0.094 3.2E-06 56.1 9.6 35 319-356 116-150 (357)
225 1nd6_A Prostatic acid phosphat 94.6 0.071 2.4E-06 56.6 8.5 65 531-595 7-87 (354)
226 4fcw_A Chaperone protein CLPB; 94.6 0.031 1.1E-06 57.8 5.4 38 321-358 48-85 (311)
227 1np6_A Molybdopterin-guanine d 94.5 0.033 1.1E-06 53.9 5.2 34 321-354 7-40 (174)
228 3vfd_A Spastin; ATPase, microt 94.5 0.1 3.5E-06 56.4 9.4 26 320-345 148-173 (389)
229 4b4t_H 26S protease regulatory 94.4 0.066 2.3E-06 59.7 7.9 29 319-347 242-270 (467)
230 2z43_A DNA repair and recombin 94.4 0.093 3.2E-06 55.5 8.6 39 320-358 107-151 (324)
231 2r6a_A DNAB helicase, replicat 94.4 0.2 6.7E-06 55.6 11.6 116 310-436 194-321 (454)
232 1g41_A Heat shock protein HSLU 94.3 0.084 2.9E-06 58.6 8.5 27 320-346 50-76 (444)
233 2ga8_A Hypothetical 39.9 kDa p 94.3 0.03 1E-06 60.5 4.5 28 320-347 24-51 (359)
234 1lv7_A FTSH; alpha/beta domain 94.2 0.024 8.3E-07 57.3 3.6 24 322-345 47-70 (257)
235 3pvs_A Replication-associated 94.2 0.15 5.3E-06 56.5 10.4 24 322-345 52-75 (447)
236 3ntl_A Acid glucose-1-phosphat 94.2 0.14 4.6E-06 56.2 9.7 66 530-595 10-100 (398)
237 2orw_A Thymidine kinase; TMTK, 94.2 0.041 1.4E-06 53.5 5.0 34 321-354 4-37 (184)
238 2qgz_A Helicase loader, putati 94.2 0.038 1.3E-06 58.3 5.0 39 321-359 153-192 (308)
239 3n70_A Transport activator; si 94.2 0.024 8.4E-07 52.5 3.2 33 323-356 27-59 (145)
240 1iqp_A RFCS; clamp loader, ext 94.2 0.081 2.8E-06 54.7 7.5 24 323-346 49-72 (327)
241 3u61_B DNA polymerase accessor 94.2 0.08 2.7E-06 55.3 7.5 27 319-345 47-73 (324)
242 2w0m_A SSO2452; RECA, SSPF, un 94.1 0.043 1.5E-06 53.7 5.1 37 321-357 24-60 (235)
243 3end_A Light-independent proto 94.1 0.047 1.6E-06 56.8 5.6 39 319-357 40-78 (307)
244 3bgw_A DNAB-like replicative h 94.1 0.37 1.3E-05 53.4 13.1 47 310-357 188-234 (444)
245 1v5w_A DMC1, meiotic recombina 94.0 0.2 6.8E-06 53.5 10.2 40 319-358 121-166 (343)
246 1njg_A DNA polymerase III subu 93.8 0.038 1.3E-06 53.7 3.9 26 321-346 46-71 (250)
247 3lda_A DNA repair protein RAD5 93.8 0.18 6E-06 55.3 9.6 48 310-357 168-221 (400)
248 2r2a_A Uncharacterized protein 93.8 0.044 1.5E-06 54.3 4.4 38 320-357 5-48 (199)
249 1sxj_B Activator 1 37 kDa subu 93.8 0.063 2.2E-06 55.4 5.8 24 323-346 45-68 (323)
250 3ug7_A Arsenical pump-driving 93.7 0.064 2.2E-06 57.5 5.8 41 318-358 24-64 (349)
251 2xtp_A GTPase IMAP family memb 93.7 0.19 6.3E-06 50.8 9.0 24 319-342 21-44 (260)
252 1z0n_A 5'-AMP-activated protei 93.7 0.095 3.3E-06 45.8 5.9 54 29-95 9-62 (96)
253 2wsm_A Hydrogenase expression/ 93.7 0.067 2.3E-06 52.3 5.5 35 319-354 29-63 (221)
254 2bjv_A PSP operon transcriptio 93.7 0.043 1.5E-06 55.8 4.2 37 322-358 31-67 (265)
255 3zq6_A Putative arsenical pump 93.7 0.084 2.9E-06 55.9 6.6 39 320-358 14-52 (324)
256 3cf0_A Transitional endoplasmi 93.6 0.034 1.2E-06 58.1 3.4 26 320-345 49-74 (301)
257 3aez_A Pantothenate kinase; tr 93.6 0.045 1.5E-06 57.9 4.4 42 318-359 88-131 (312)
258 2dr3_A UPF0273 protein PH0284; 93.6 0.063 2.1E-06 53.2 5.1 38 320-357 23-60 (247)
259 2x8a_A Nuclear valosin-contain 93.4 0.038 1.3E-06 57.2 3.3 23 323-345 47-69 (274)
260 1w5s_A Origin recognition comp 93.4 0.53 1.8E-05 50.3 12.5 28 319-346 49-78 (412)
261 1ye8_A Protein THEP1, hypothet 93.4 0.047 1.6E-06 52.9 3.7 24 322-345 2-25 (178)
262 2woo_A ATPase GET3; tail-ancho 93.3 0.073 2.5E-06 56.5 5.4 41 319-359 18-58 (329)
263 2gza_A Type IV secretion syste 93.3 0.13 4.4E-06 55.4 7.4 136 321-467 176-314 (361)
264 2www_A Methylmalonic aciduria 93.3 0.092 3.1E-06 56.3 6.2 39 318-356 72-110 (349)
265 2p67_A LAO/AO transport system 93.3 0.079 2.7E-06 56.5 5.7 39 319-357 55-93 (341)
266 2qmh_A HPR kinase/phosphorylas 93.3 0.046 1.6E-06 54.5 3.4 26 320-345 34-59 (205)
267 1ixz_A ATP-dependent metallopr 93.2 0.042 1.4E-06 55.5 3.2 23 323-345 52-74 (254)
268 1lvg_A Guanylate kinase, GMP k 93.2 0.04 1.4E-06 54.0 3.0 25 321-345 5-29 (198)
269 3cf2_A TER ATPase, transitiona 93.2 0.057 2E-06 64.2 4.8 36 318-356 236-271 (806)
270 1q57_A DNA primase/helicase; d 93.2 0.38 1.3E-05 53.9 11.3 47 310-357 233-280 (503)
271 2b8t_A Thymidine kinase; deoxy 93.2 0.088 3E-06 53.1 5.5 37 319-355 11-47 (223)
272 3it3_A Acid phosphatase; HAP, 93.1 0.22 7.5E-06 53.2 8.7 66 530-595 11-92 (342)
273 3hws_A ATP-dependent CLP prote 93.1 0.041 1.4E-06 58.8 3.0 34 320-356 51-84 (363)
274 2ce7_A Cell division protein F 93.0 0.25 8.4E-06 55.4 9.4 31 323-356 52-82 (476)
275 1dkq_A Phytase; histidine acid 93.0 0.17 5.8E-06 55.4 7.9 66 530-595 11-100 (410)
276 3iqw_A Tail-anchored protein t 92.9 0.091 3.1E-06 56.2 5.4 39 319-357 15-53 (334)
277 3a1s_A Iron(II) transport prot 92.9 0.2 6.8E-06 51.2 7.7 24 319-342 4-27 (258)
278 1in4_A RUVB, holliday junction 92.8 0.054 1.8E-06 57.5 3.5 25 321-345 52-76 (334)
279 2r62_A Cell division protease 92.8 0.032 1.1E-06 56.7 1.5 24 323-346 47-70 (268)
280 4dzz_A Plasmid partitioning pr 92.7 0.082 2.8E-06 51.0 4.4 38 321-358 3-40 (206)
281 1xx6_A Thymidine kinase; NESG, 92.7 0.13 4.3E-06 50.6 5.7 37 319-355 7-43 (191)
282 2ehv_A Hypothetical protein PH 92.7 0.1 3.5E-06 51.8 5.1 37 320-356 30-67 (251)
283 1r6b_X CLPA protein; AAA+, N-t 92.7 0.24 8.4E-06 58.2 9.1 35 322-359 490-524 (758)
284 3rhf_A Putative polyphosphate 92.6 0.075 2.6E-06 55.5 4.1 110 318-453 73-202 (289)
285 2eyu_A Twitching motility prot 92.6 0.59 2E-05 47.9 10.8 29 319-347 24-52 (261)
286 3czp_A Putative polyphosphate 92.6 0.15 5E-06 57.6 6.6 110 318-453 41-170 (500)
287 1tue_A Replication protein E1; 92.5 0.054 1.8E-06 54.2 2.7 26 320-345 58-83 (212)
288 2f1r_A Molybdopterin-guanine d 92.5 0.063 2.2E-06 51.8 3.2 33 322-354 4-36 (171)
289 1iy2_A ATP-dependent metallopr 92.5 0.06 2E-06 55.3 3.2 23 323-345 76-98 (278)
290 2c3v_A Alpha-amylase G-6; carb 92.5 0.075 2.6E-06 47.2 3.3 76 28-117 9-85 (102)
291 1dek_A Deoxynucleoside monopho 92.5 0.066 2.3E-06 54.7 3.5 26 321-346 2-27 (241)
292 3uk6_A RUVB-like 2; hexameric 92.4 0.066 2.3E-06 56.8 3.6 27 320-346 70-96 (368)
293 1cr0_A DNA primase/helicase; R 92.4 0.11 3.9E-06 53.6 5.3 37 320-356 35-72 (296)
294 3czq_A Putative polyphosphate 92.4 0.16 5.5E-06 53.6 6.4 36 319-354 85-120 (304)
295 1pzn_A RAD51, DNA repair and r 92.4 0.89 3E-05 48.6 12.4 26 319-344 130-155 (349)
296 2hf9_A Probable hydrogenase ni 92.4 0.13 4.5E-06 50.4 5.4 28 319-346 37-64 (226)
297 3pxg_A Negative regulator of g 92.4 0.095 3.2E-06 58.4 4.8 25 322-346 203-227 (468)
298 2c9o_A RUVB-like 1; hexameric 92.4 0.065 2.2E-06 59.5 3.5 35 321-356 64-98 (456)
299 3ea0_A ATPase, para family; al 92.3 0.14 4.8E-06 50.9 5.6 41 319-359 4-45 (245)
300 3kjh_A CO dehydrogenase/acetyl 92.3 0.075 2.6E-06 52.7 3.5 36 323-358 3-38 (254)
301 2dyk_A GTP-binding protein; GT 92.2 0.033 1.1E-06 51.0 0.7 22 322-343 3-24 (161)
302 2i1q_A DNA repair and recombin 92.2 0.35 1.2E-05 50.7 8.8 25 319-343 97-121 (322)
303 3k53_A Ferrous iron transport 92.2 0.21 7.1E-06 51.1 6.8 24 320-343 3-26 (271)
304 2vp4_A Deoxynucleoside kinase; 92.1 0.06 2E-06 53.8 2.6 26 318-343 18-43 (230)
305 3k9g_A PF-32 protein; ssgcid, 92.1 0.11 3.7E-06 52.8 4.5 40 319-359 27-66 (267)
306 1g3q_A MIND ATPase, cell divis 92.1 0.13 4.5E-06 50.8 5.1 39 320-358 3-41 (237)
307 1svi_A GTP-binding protein YSX 92.1 0.15 5E-06 48.4 5.2 24 319-342 22-45 (195)
308 2woj_A ATPase GET3; tail-ancho 92.1 0.13 4.5E-06 55.3 5.3 40 319-358 17-58 (354)
309 3pfi_A Holliday junction ATP-d 91.9 0.074 2.5E-06 55.9 3.1 25 322-346 57-81 (338)
310 2ph1_A Nucleotide-binding prot 91.9 0.16 5.6E-06 51.5 5.6 41 319-359 18-58 (262)
311 2wnh_A 3-phytase; histidine ac 91.9 0.26 9E-06 54.0 7.7 46 550-595 53-108 (418)
312 2afh_E Nitrogenase iron protei 91.9 0.15 5E-06 52.6 5.3 37 322-358 4-40 (289)
313 3pxi_A Negative regulator of g 91.9 0.13 4.5E-06 60.6 5.6 42 318-359 518-560 (758)
314 1cp2_A CP2, nitrogenase iron p 91.9 0.15 5.2E-06 51.6 5.3 37 322-358 3-39 (269)
315 3pqc_A Probable GTP-binding pr 91.8 0.98 3.4E-05 42.3 10.7 24 320-343 23-46 (195)
316 3i8s_A Ferrous iron transport 91.8 0.25 8.7E-06 50.8 6.9 24 320-343 3-26 (274)
317 1z6g_A Guanylate kinase; struc 91.8 0.073 2.5E-06 52.9 2.7 25 320-344 23-47 (218)
318 1znw_A Guanylate kinase, GMP k 91.7 0.089 3.1E-06 51.5 3.3 26 320-345 20-45 (207)
319 3cwq_A Para family chromosome 91.7 0.17 5.7E-06 49.9 5.3 37 321-358 2-38 (209)
320 2wjg_A FEOB, ferrous iron tran 91.7 0.13 4.4E-06 48.5 4.2 25 318-342 5-29 (188)
321 4a74_A DNA repair and recombin 91.7 0.085 2.9E-06 51.7 3.0 26 319-344 24-49 (231)
322 1wf3_A GTP-binding protein; GT 91.6 0.9 3.1E-05 47.5 11.0 22 321-342 8-29 (301)
323 3iev_A GTP-binding protein ERA 91.6 0.92 3.1E-05 47.4 11.1 25 318-342 8-32 (308)
324 3q9l_A Septum site-determining 91.6 0.16 5.4E-06 50.9 5.1 39 320-358 3-41 (260)
325 1sxj_A Activator 1 95 kDa subu 91.6 0.1 3.6E-06 58.7 4.1 35 320-357 77-111 (516)
326 3io3_A DEHA2D07832P; chaperone 91.6 0.15 5.2E-06 54.7 5.2 39 319-357 17-57 (348)
327 2zts_A Putative uncharacterize 91.6 0.17 6E-06 50.0 5.3 37 320-356 30-67 (251)
328 1hyq_A MIND, cell division inh 91.5 0.19 6.4E-06 50.7 5.5 39 320-358 3-41 (263)
329 2qm8_A GTPase/ATPase; G protei 91.5 0.19 6.4E-06 53.7 5.7 38 319-356 54-91 (337)
330 3la6_A Tyrosine-protein kinase 91.5 0.2 6.8E-06 52.2 5.8 42 318-359 91-132 (286)
331 1sxj_D Activator 1 41 kDa subu 91.5 0.099 3.4E-06 54.8 3.5 23 323-345 61-83 (353)
332 3nme_A Ptpkis1 protein, SEX4 g 91.4 0.18 6.2E-06 52.9 5.4 60 27-96 166-226 (294)
333 1tf7_A KAIC; homohexamer, hexa 91.3 0.42 1.4E-05 53.9 8.7 37 320-356 281-317 (525)
334 1ihu_A Arsenical pump-driving 91.3 0.16 5.5E-06 58.1 5.3 38 320-357 8-45 (589)
335 3bfv_A CAPA1, CAPB2, membrane 91.3 0.22 7.4E-06 51.4 5.7 40 320-359 83-122 (271)
336 1svm_A Large T antigen; AAA+ f 91.3 0.12 3.9E-06 56.3 3.8 26 320-345 169-194 (377)
337 2i3b_A HCR-ntpase, human cance 91.1 0.11 3.8E-06 50.8 3.2 28 322-349 3-30 (189)
338 3czp_A Putative polyphosphate 91.1 0.21 7.3E-06 56.2 5.9 110 318-453 298-427 (500)
339 1g8p_A Magnesium-chelatase 38 91.1 0.07 2.4E-06 56.0 1.8 23 323-345 48-70 (350)
340 1n0w_A DNA repair protein RAD5 91.0 0.091 3.1E-06 52.0 2.5 39 320-358 24-68 (243)
341 2r44_A Uncharacterized protein 91.0 0.075 2.6E-06 55.8 1.9 25 322-346 48-72 (331)
342 1hqc_A RUVB; extended AAA-ATPa 90.9 0.1 3.4E-06 54.3 2.8 25 321-345 39-63 (324)
343 3cio_A ETK, tyrosine-protein k 90.9 0.25 8.5E-06 51.7 5.9 38 321-358 105-143 (299)
344 1sxj_C Activator 1 40 kDa subu 90.9 0.12 4.1E-06 54.6 3.4 24 323-346 49-72 (340)
345 2oze_A ORF delta'; para, walke 90.9 0.2 6.8E-06 51.7 5.0 41 320-360 35-77 (298)
346 4dcu_A GTP-binding protein ENG 90.9 0.12 4.1E-06 57.3 3.6 38 402-439 104-142 (456)
347 3iby_A Ferrous iron transport 90.9 0.3 1E-05 49.9 6.2 22 322-343 3-24 (256)
348 3co5_A Putative two-component 90.6 0.076 2.6E-06 49.0 1.4 23 323-345 30-52 (143)
349 4aee_A Alpha amylase, catalyti 90.5 0.32 1.1E-05 57.0 6.8 60 27-95 14-73 (696)
350 3hu3_A Transitional endoplasmi 90.5 0.56 1.9E-05 52.6 8.6 37 320-359 238-274 (489)
351 3cmw_A Protein RECA, recombina 90.5 0.55 1.9E-05 60.0 9.4 49 309-357 720-769 (1706)
352 2hjg_A GTP-binding protein ENG 90.5 0.47 1.6E-05 52.2 7.8 21 322-342 5-25 (436)
353 1sxj_E Activator 1 40 kDa subu 90.4 0.14 4.8E-06 53.9 3.5 26 319-345 36-61 (354)
354 2pt7_A CAG-ALFA; ATPase, prote 90.3 0.35 1.2E-05 51.4 6.5 115 321-451 172-287 (330)
355 3cmu_A Protein RECA, recombina 90.3 1.1 3.9E-05 58.0 12.1 49 309-357 1415-1464(2050)
356 2zan_A Vacuolar protein sortin 90.3 0.13 4.5E-06 56.9 3.2 25 320-344 167-191 (444)
357 1jr3_A DNA polymerase III subu 90.3 0.16 5.6E-06 53.6 3.8 26 321-346 39-64 (373)
358 1htw_A HI0065; nucleotide-bind 90.2 0.2 6.7E-06 47.6 3.9 26 319-344 32-57 (158)
359 1ojl_A Transcriptional regulat 90.2 0.14 4.9E-06 53.6 3.3 36 322-357 27-62 (304)
360 3m6a_A ATP-dependent protease 90.2 0.15 5.2E-06 57.9 3.7 26 320-345 108-133 (543)
361 1u0j_A DNA replication protein 90.2 0.15 5E-06 52.9 3.2 30 318-347 102-131 (267)
362 3fkq_A NTRC-like two-domain pr 90.2 0.27 9.1E-06 53.0 5.4 39 319-357 143-181 (373)
363 2j9r_A Thymidine kinase; TK1, 90.1 0.34 1.2E-05 48.5 5.8 38 318-355 26-63 (214)
364 2v9p_A Replication protein E1; 90.0 0.17 5.8E-06 53.4 3.6 24 321-344 127-150 (305)
365 1nrj_B SR-beta, signal recogni 90.0 0.18 6.1E-06 49.0 3.6 27 318-344 10-36 (218)
366 4dhe_A Probable GTP-binding pr 90.0 0.82 2.8E-05 44.3 8.4 25 319-343 28-52 (223)
367 3bc1_A RAS-related protein RAB 90.0 0.21 7.3E-06 46.8 4.0 25 318-342 9-33 (195)
368 1wcv_1 SOJ, segregation protei 89.7 0.18 6.2E-06 51.0 3.5 40 320-359 7-46 (257)
369 3cf2_A TER ATPase, transitiona 89.7 0.26 8.8E-06 58.7 5.2 28 320-347 511-538 (806)
370 1upt_A ARL1, ADP-ribosylation 89.6 0.26 8.8E-06 45.3 4.2 24 319-342 6-29 (171)
371 3jvv_A Twitching mobility prot 89.6 0.76 2.6E-05 49.4 8.4 26 322-347 125-150 (356)
372 1z0f_A RAB14, member RAS oncog 89.6 0.23 7.9E-06 46.0 3.8 26 318-343 13-38 (179)
373 2dhr_A FTSH; AAA+ protein, hex 89.6 0.26 8.7E-06 55.6 4.8 31 323-356 67-97 (499)
374 1ypw_A Transitional endoplasmi 89.5 0.78 2.7E-05 54.6 9.2 35 319-356 237-271 (806)
375 1ihu_A Arsenical pump-driving 89.4 0.35 1.2E-05 55.3 5.9 39 319-357 326-364 (589)
376 2chq_A Replication factor C sm 89.4 0.19 6.6E-06 51.6 3.4 23 323-345 41-63 (319)
377 3con_A GTPase NRAS; structural 89.4 0.22 7.6E-06 47.0 3.6 25 319-343 20-44 (190)
378 3ice_A Transcription terminati 89.3 0.42 1.4E-05 52.3 6.0 31 322-352 176-206 (422)
379 2xj4_A MIPZ; replication, cell 89.2 0.27 9.3E-06 50.7 4.4 38 321-358 6-43 (286)
380 2gj8_A MNME, tRNA modification 89.2 0.23 7.8E-06 46.8 3.5 25 319-343 3-27 (172)
381 2wji_A Ferrous iron transport 89.2 0.23 7.9E-06 46.2 3.5 23 320-342 3-25 (165)
382 1nlf_A Regulatory protein REPA 89.1 0.23 7.8E-06 51.0 3.7 26 320-345 30-55 (279)
383 2ce2_X GTPase HRAS; signaling 89.0 0.26 8.9E-06 44.7 3.7 24 320-343 3-26 (166)
384 2lkc_A Translation initiation 89.0 0.28 9.7E-06 45.5 4.0 24 319-342 7-30 (178)
385 2h17_A ADP-ribosylation factor 89.0 0.22 7.7E-06 46.9 3.3 25 318-342 19-43 (181)
386 1p6x_A Thymidine kinase; P-loo 88.9 0.14 4.9E-06 54.7 2.1 29 319-347 6-34 (334)
387 1z2a_A RAS-related protein RAB 88.9 0.27 9.1E-06 45.0 3.7 25 319-343 4-28 (168)
388 1mky_A Probable GTP-binding pr 88.8 0.69 2.4E-05 50.8 7.6 25 319-343 179-203 (439)
389 1z06_A RAS-related protein RAB 88.8 0.26 8.9E-06 46.7 3.7 25 318-342 18-42 (189)
390 1qwo_A Phytase; alpha barrel, 88.8 0.81 2.8E-05 50.3 8.2 46 550-595 101-149 (442)
391 1c9k_A COBU, adenosylcobinamid 88.8 0.19 6.4E-06 49.1 2.6 22 322-343 1-22 (180)
392 1oix_A RAS-related protein RAB 88.8 0.25 8.6E-06 47.3 3.5 26 319-344 28-53 (191)
393 3tqf_A HPR(Ser) kinase; transf 88.7 0.2 6.9E-06 48.8 2.7 24 320-343 16-39 (181)
394 3e1s_A Exodeoxyribonuclease V, 88.6 0.34 1.2E-05 55.5 5.1 34 321-354 205-238 (574)
395 3ihw_A Centg3; RAS, centaurin, 88.6 0.32 1.1E-05 46.3 4.2 27 317-343 17-43 (184)
396 1kao_A RAP2A; GTP-binding prot 88.6 0.29 9.9E-06 44.5 3.7 23 320-342 3-25 (167)
397 1m7b_A RND3/RHOE small GTP-bin 88.6 0.28 9.5E-06 46.3 3.7 26 318-343 5-30 (184)
398 1qvr_A CLPB protein; coiled co 88.4 0.26 9.1E-06 59.0 4.1 38 322-359 590-627 (854)
399 2erx_A GTP-binding protein DI- 88.2 0.3 1E-05 44.8 3.5 23 320-342 3-25 (172)
400 1byi_A Dethiobiotin synthase; 88.1 0.51 1.7E-05 46.2 5.3 35 321-355 3-37 (224)
401 2hxs_A RAB-26, RAS-related pro 88.1 0.37 1.2E-05 44.7 4.1 24 319-342 5-28 (178)
402 2ged_A SR-beta, signal recogni 88.0 0.3 1E-05 46.2 3.5 26 318-343 46-71 (193)
403 3cmu_A Protein RECA, recombina 88.0 1.9 6.7E-05 55.9 11.7 40 319-358 1080-1119(2050)
404 2ewv_A Twitching motility prot 88.0 0.49 1.7E-05 51.1 5.6 29 319-347 135-163 (372)
405 2nzj_A GTP-binding protein REM 87.9 0.33 1.1E-05 44.8 3.7 24 319-342 3-26 (175)
406 1mky_A Probable GTP-binding pr 87.9 0.71 2.4E-05 50.7 6.9 21 322-342 3-23 (439)
407 3upu_A ATP-dependent DNA helic 87.9 0.4 1.4E-05 53.0 4.9 28 322-349 47-74 (459)
408 1u8z_A RAS-related protein RAL 87.8 0.35 1.2E-05 44.0 3.7 24 320-343 4-27 (168)
409 2c78_A Elongation factor TU-A; 87.8 2.2 7.7E-05 46.1 10.8 27 319-345 10-36 (405)
410 4dsu_A GTPase KRAS, isoform 2B 87.6 0.34 1.2E-05 45.3 3.6 25 319-343 3-27 (189)
411 2il1_A RAB12; G-protein, GDP, 87.6 0.33 1.1E-05 46.3 3.5 25 318-342 24-48 (192)
412 3nbx_X ATPase RAVA; AAA+ ATPas 87.5 0.15 5.2E-06 57.4 1.3 24 322-345 43-66 (500)
413 1c1y_A RAS-related protein RAP 87.4 0.38 1.3E-05 43.9 3.7 23 320-342 3-25 (167)
414 1pui_A ENGB, probable GTP-bind 87.4 0.21 7.1E-06 48.1 2.0 24 319-342 25-48 (210)
415 1ky3_A GTP-binding protein YPT 87.4 0.37 1.3E-05 44.7 3.7 25 319-343 7-31 (182)
416 3kkq_A RAS-related protein M-R 87.3 0.41 1.4E-05 44.8 3.9 26 318-343 16-41 (183)
417 3q85_A GTP-binding protein REM 87.3 0.3 1E-05 44.8 3.0 21 321-341 3-23 (169)
418 3pxi_A Negative regulator of g 87.3 0.28 9.7E-06 57.8 3.4 24 322-345 203-226 (758)
419 2fn4_A P23, RAS-related protei 87.3 0.4 1.4E-05 44.4 3.9 25 319-343 8-32 (181)
420 3cmw_A Protein RECA, recombina 87.3 2.3 7.9E-05 54.5 11.7 49 309-357 371-420 (1706)
421 3q72_A GTP-binding protein RAD 87.2 0.29 9.9E-06 44.9 2.8 20 322-341 4-23 (166)
422 4ag6_A VIRB4 ATPase, type IV s 87.2 0.48 1.6E-05 51.1 5.0 41 322-362 37-78 (392)
423 3clv_A RAB5 protein, putative; 87.2 0.5 1.7E-05 44.4 4.5 25 319-343 6-30 (208)
424 1a5t_A Delta prime, HOLB; zinc 87.1 0.39 1.3E-05 50.7 4.1 27 320-346 24-50 (334)
425 2efe_B Small GTP-binding prote 87.0 0.4 1.4E-05 44.6 3.7 26 318-343 10-35 (181)
426 2zej_A Dardarin, leucine-rich 86.9 0.27 9.3E-06 46.6 2.5 22 321-342 3-24 (184)
427 3lxw_A GTPase IMAP family memb 86.9 0.36 1.2E-05 48.7 3.5 25 318-342 19-43 (247)
428 1d2e_A Elongation factor TU (E 86.9 2.5 8.5E-05 45.7 10.4 25 320-344 3-27 (397)
429 2f9l_A RAB11B, member RAS onco 86.9 0.4 1.4E-05 46.0 3.6 24 320-343 5-28 (199)
430 1z08_A RAS-related protein RAB 86.7 0.43 1.5E-05 43.8 3.7 25 319-343 5-29 (170)
431 1of1_A Thymidine kinase; trans 86.7 0.28 9.7E-06 53.2 2.7 31 318-348 47-77 (376)
432 3lxx_A GTPase IMAP family memb 86.7 0.38 1.3E-05 47.9 3.5 25 318-342 27-51 (239)
433 1r2q_A RAS-related protein RAB 86.7 0.41 1.4E-05 43.8 3.5 24 319-342 5-28 (170)
434 1lw7_A Transcriptional regulat 86.7 0.29 9.9E-06 52.4 2.8 25 321-345 171-195 (365)
435 1ek0_A Protein (GTP-binding pr 86.7 0.41 1.4E-05 43.7 3.5 24 320-343 3-26 (170)
436 1nij_A Hypothetical protein YJ 86.6 0.32 1.1E-05 51.2 3.1 23 322-344 6-28 (318)
437 1zd9_A ADP-ribosylation factor 86.6 0.44 1.5E-05 45.2 3.8 25 318-342 20-44 (188)
438 2pcj_A ABC transporter, lipopr 86.6 0.31 1.1E-05 48.8 2.7 23 321-343 31-53 (224)
439 3b85_A Phosphate starvation-in 86.6 0.33 1.1E-05 48.1 2.9 23 321-343 23-45 (208)
440 1moz_A ARL1, ADP-ribosylation 86.5 0.35 1.2E-05 45.2 3.0 24 318-341 16-39 (183)
441 3pg5_A Uncharacterized protein 86.4 0.29 9.8E-06 52.6 2.6 39 320-358 2-40 (361)
442 3j2k_7 ERF3, eukaryotic polype 86.4 5.5 0.00019 43.7 13.0 25 319-343 16-40 (439)
443 1wms_A RAB-9, RAB9, RAS-relate 86.4 0.43 1.5E-05 44.2 3.5 24 319-342 6-29 (177)
444 3tif_A Uncharacterized ABC tra 86.4 0.31 1.1E-05 49.1 2.7 23 321-343 32-54 (235)
445 1fzq_A ADP-ribosylation factor 86.4 0.45 1.5E-05 45.0 3.7 24 319-342 15-38 (181)
446 1zj6_A ADP-ribosylation factor 86.4 0.48 1.6E-05 44.7 3.9 25 318-342 14-38 (187)
447 3k4q_A 3-phytase A; PHYA, 3-ph 86.4 1.2 4.3E-05 49.2 7.8 46 550-595 102-150 (444)
448 2gf9_A RAS-related protein RAB 86.3 0.55 1.9E-05 44.4 4.3 26 318-343 20-45 (189)
449 3tr5_A RF-3, peptide chain rel 86.3 1.2 4.2E-05 50.3 7.9 38 402-439 107-145 (528)
450 1z0j_A RAB-22, RAS-related pro 86.3 0.44 1.5E-05 43.6 3.5 25 319-343 5-29 (170)
451 2g6b_A RAS-related protein RAB 86.2 0.45 1.5E-05 44.2 3.6 25 319-343 9-33 (180)
452 2a5j_A RAS-related protein RAB 86.2 0.57 1.9E-05 44.4 4.3 26 317-342 18-43 (191)
453 2gf0_A GTP-binding protein DI- 86.2 0.53 1.8E-05 44.6 4.1 24 319-342 7-30 (199)
454 1g16_A RAS-related protein SEC 86.0 0.49 1.7E-05 43.3 3.7 23 320-342 3-25 (170)
455 3p26_A Elongation factor 1 alp 86.0 2.1 7E-05 47.7 9.4 25 319-343 32-56 (483)
456 2cbz_A Multidrug resistance-as 85.9 0.34 1.2E-05 48.9 2.7 24 321-344 32-55 (237)
457 3k1j_A LON protease, ATP-depen 85.9 0.41 1.4E-05 55.0 3.7 26 322-347 62-87 (604)
458 2onk_A Molybdate/tungstate ABC 85.8 0.41 1.4E-05 48.5 3.2 24 321-344 25-48 (240)
459 3th5_A RAS-related C3 botulinu 85.9 0.15 5.2E-06 49.0 0.0 25 318-342 28-52 (204)
460 1r8s_A ADP-ribosylation factor 85.7 0.44 1.5E-05 43.5 3.2 21 323-343 3-23 (164)
461 3t1o_A Gliding protein MGLA; G 85.6 0.44 1.5E-05 44.8 3.2 26 319-344 13-38 (198)
462 2y8e_A RAB-protein 6, GH09086P 85.6 0.46 1.6E-05 43.9 3.3 24 319-342 13-36 (179)
463 3tw8_B RAS-related protein RAB 85.6 0.49 1.7E-05 43.8 3.5 24 319-342 8-31 (181)
464 2oil_A CATX-8, RAS-related pro 85.6 0.57 2E-05 44.3 4.0 26 318-343 23-48 (193)
465 3ez2_A Plasmid partition prote 85.5 0.68 2.3E-05 50.0 5.0 40 319-358 108-153 (398)
466 3t5g_A GTP-binding protein RHE 85.5 0.43 1.5E-05 44.5 3.1 24 319-342 5-28 (181)
467 3llu_A RAS-related GTP-binding 85.5 0.43 1.5E-05 45.6 3.1 27 317-343 17-43 (196)
468 3kta_A Chromosome segregation 85.5 0.49 1.7E-05 44.7 3.4 24 322-345 28-51 (182)
469 2fna_A Conserved hypothetical 85.5 0.49 1.7E-05 49.1 3.8 32 322-356 32-63 (357)
470 2a9k_A RAS-related protein RAL 85.4 0.51 1.8E-05 43.9 3.5 24 319-342 17-40 (187)
471 1qvr_A CLPB protein; coiled co 85.4 0.5 1.7E-05 56.5 4.3 25 322-346 193-217 (854)
472 2a5y_B CED-4; apoptosis; HET: 85.3 0.51 1.7E-05 53.4 4.1 24 319-342 151-174 (549)
473 4g1u_C Hemin import ATP-bindin 85.3 0.38 1.3E-05 49.5 2.8 24 321-344 38-61 (266)
474 1e2k_A Thymidine kinase; trans 85.3 0.29 1E-05 52.2 1.9 30 319-348 3-32 (331)
475 3cbq_A GTP-binding protein REM 85.2 0.41 1.4E-05 46.0 2.8 24 318-341 21-44 (195)
476 2d2e_A SUFC protein; ABC-ATPas 85.2 0.45 1.5E-05 48.4 3.2 23 321-343 30-52 (250)
477 2h57_A ADP-ribosylation factor 85.2 0.42 1.4E-05 45.3 2.8 26 318-343 19-44 (190)
478 2fh5_B SR-beta, signal recogni 85.0 0.48 1.6E-05 45.8 3.2 25 319-343 6-30 (214)
479 1p9r_A General secretion pathw 85.0 0.73 2.5E-05 50.7 5.0 28 320-347 167-194 (418)
480 1ksh_A ARF-like protein 2; sma 85.0 0.54 1.8E-05 44.1 3.5 24 319-342 17-40 (186)
481 2cxx_A Probable GTP-binding pr 85.0 0.45 1.6E-05 44.6 3.0 21 322-342 3-23 (190)
482 2bme_A RAB4A, RAS-related prot 85.0 0.55 1.9E-05 43.9 3.5 25 319-343 9-33 (186)
483 1mv5_A LMRA, multidrug resista 85.0 0.48 1.6E-05 47.9 3.3 25 320-344 28-52 (243)
484 2ff7_A Alpha-hemolysin translo 84.8 0.41 1.4E-05 48.6 2.7 24 321-344 36-59 (247)
485 1b0u_A Histidine permease; ABC 84.7 0.42 1.4E-05 49.0 2.7 24 321-344 33-56 (262)
486 4bas_A ADP-ribosylation factor 84.7 0.55 1.9E-05 44.4 3.4 25 318-342 15-39 (199)
487 2p5s_A RAS and EF-hand domain 84.6 0.61 2.1E-05 44.6 3.7 25 318-342 26-50 (199)
488 1mh1_A RAC1; GTP-binding, GTPa 84.6 0.64 2.2E-05 43.3 3.8 24 319-342 4-27 (186)
489 1f6b_A SAR1; gtpases, N-termin 84.6 0.57 1.9E-05 45.1 3.5 23 319-341 24-46 (198)
490 2bov_A RAla, RAS-related prote 84.6 0.67 2.3E-05 44.1 4.0 25 319-343 13-37 (206)
491 1m2o_B GTP-binding protein SAR 84.5 0.53 1.8E-05 44.9 3.2 24 319-342 22-45 (190)
492 1vg8_A RAS-related protein RAB 84.4 0.62 2.1E-05 44.4 3.7 25 319-343 7-31 (207)
493 1ji0_A ABC transporter; ATP bi 84.4 0.45 1.5E-05 48.1 2.7 24 321-344 33-56 (240)
494 3gfo_A Cobalt import ATP-bindi 84.4 0.44 1.5E-05 49.4 2.7 24 321-344 35-58 (275)
495 1x3s_A RAS-related protein RAB 84.4 0.6 2E-05 43.9 3.5 25 319-343 14-38 (195)
496 2zu0_C Probable ATP-dependent 84.3 0.52 1.8E-05 48.5 3.2 23 321-343 47-69 (267)
497 3tkl_A RAS-related protein RAB 84.2 0.71 2.4E-05 43.5 4.0 25 319-343 15-39 (196)
498 2atv_A RERG, RAS-like estrogen 84.2 0.68 2.3E-05 44.1 3.8 25 319-343 27-51 (196)
499 1g6h_A High-affinity branched- 84.2 0.46 1.6E-05 48.5 2.7 24 321-344 34-57 (257)
500 2olj_A Amino acid ABC transpor 84.2 0.46 1.6E-05 48.9 2.7 24 321-344 51-74 (263)
No 1
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=100.00 E-value=2.6e-70 Score=623.66 Aligned_cols=395 Identities=47% Similarity=0.834 Sum_probs=369.1
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
...|.+|+|+|+|||||||+|++|+++|+|.++++++|+.|++|+...+.....+||.+.+++.++.+++++..+++++.
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~ 111 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVK 111 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999988776555688988899999999999999999999
Q ss_pred HHHh-cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004941 397 SWMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 474 (722)
Q Consensus 397 ~~l~-~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~R 474 (722)
.+|. +.|.+||+|+||..++.|+.++++ .+.++.++||++.|++++++++|+.+++..+|+|.+. ++++++++|.+|
T Consensus 112 ~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~-d~e~~~~~~~~R 190 (520)
T 2axn_A 112 SYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDC-NSAEAMDDFMKR 190 (520)
T ss_dssp HHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTS-CHHHHHHHHHHH
T ss_pred HHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccC-CHHHHHHHHHHH
Confidence 9985 579999999999999999999887 5568899999999999999999998887778999998 899999999999
Q ss_pred HHhhhcccccCCCC------CeEEEeecccCCccceeeeccccccCCceeEEeeccCCCCccEEEecccccccccCCCcC
Q 004941 475 LANYEKVYEPVDEG------SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIG 548 (722)
Q Consensus 475 i~~y~~~yEpl~e~------~yik~i~~~~~~g~~~~~~~i~gyL~~riv~~L~n~~~~~~~IyLvRHGes~~n~~~~~~ 548 (722)
++.|++.|||++++ +|||+||+ |+++++|+++|||++||||||||+|..+++||||||||+.+|..++++
T Consensus 191 i~~y~~~Yepi~~ee~~~dl~yik~id~----g~~~~~~~~~g~l~~~~~~~l~n~~~~~~~i~LvRHGet~~n~~~~~~ 266 (520)
T 2axn_A 191 ISCYEASYQPLDPDKCDRDLSLIKVIDV----GRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEHNLQGRIG 266 (520)
T ss_dssp HHHHHTTCCCCCTTTTTTTSEEEEEETT----TTEEEEECCCSHHHHHHHHHHTTCCCSCCCEEEEECCCBHHHHHTBCS
T ss_pred HHhhhhhhcccChhhcccCcceEEEEcC----ccccccCCCCCCcchhhhhhhcccCCCceeEEEeecceeccccCCccC
Confidence 99999999999832 89999999 999999999999999999999999999999999999999999988999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhcCCCcccccccccccCCcCCCCCHHHHHhhChH
Q 004941 549 GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRALDEINAGVCDGMTYEEIKKNMPE 628 (722)
Q Consensus 549 GD~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~g~~v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~ 628 (722)
||+|||+.|++||++++++|... ...++.|||||++||+|||+++ +.++.+++.|+|+++|.|+|++++++.+.||+
T Consensus 267 gD~pLt~~G~~qA~~l~~~L~~~--~~~~~~v~sSpl~Ra~qTA~~i-~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~ 343 (520)
T 2axn_A 267 GDSGLSSRGKKFASALSKFVEEQ--NLKDLRVWTSQLKSTIQTAEAL-RLPYEQWKALNEIDAGVCEELTYEEIRDTYPE 343 (520)
T ss_dssp SCCCBCHHHHHHHHHHHHHHHHH--CCSCCEEEECSSHHHHHHHHTT-TSCEEECGGGSCCCCGGGTTCBHHHHHHHCHH
T ss_pred CCcccCHHHHHHHHHHHHHHHhc--CCCCCeEEeCCcHHHHHHHHHh-CCCcEEccccccccCCcccCCcHHHHHHHCHH
Confidence 99999999999999999999876 4567899999999999999998 78899999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEE
Q 004941 629 EYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQM 708 (722)
Q Consensus 629 ~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~ 708 (722)
.+..|..+++.+++|+|||+.++.+|+.+++.++.+. ++|||||||++|++|++++++.+.+.++.+.+|++++++|.+
T Consensus 344 ~~~~~~~d~~~~~~p~gEs~~~~~~Rv~~~l~~l~~~-~~vlvVsH~~~ir~ll~~ll~~~~~~~~~l~~p~~sv~~l~~ 422 (520)
T 2axn_A 344 EYALREQDKYYYRYPTGESYQDLVQRLEPVIMELERQ-ENVLVICHQAVLRCLLAYFLDKSAEEMPYLKCPLHTVLKLTP 422 (520)
T ss_dssp HHHHHHHCTTTCCCTTSCCHHHHHHHHHHHHHHHHHC-SSEEEEECHHHHHHHHHHHTTCCTTTGGGCCCCTTEEEEEEE
T ss_pred HHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHhCC-CcEEEEEChHHHHHHHHHHhCCCHHHhhccCCCCCeEEEEEE
Confidence 9999999999999999999999999999999999875 799999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEec
Q 004941 709 GVTGVQEKRYKL 720 (722)
Q Consensus 709 ~~~g~~~~r~~l 720 (722)
.++|+....+.+
T Consensus 423 ~~~g~~~~~~~l 434 (520)
T 2axn_A 423 VAYGCRVESIYL 434 (520)
T ss_dssp ETTEEEEEEEEC
T ss_pred cCCCceEEEEEC
Confidence 999998877664
No 2
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=100.00 E-value=1.2e-68 Score=603.22 Aligned_cols=395 Identities=46% Similarity=0.797 Sum_probs=366.3
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
...|++|+|+|+|||||||+|++|+++|+|.+++++.|+.|++|+...+......+|+..+++.++.++..+..++.++.
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999877665455678888898888888888888888888
Q ss_pred HHHh-cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 004941 397 SWMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 474 (722)
Q Consensus 397 ~~l~-~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~R 474 (722)
.++. .+|.++|+|++|.+.++|+.+++. .+.++.++|+++.|++++++.+|+.+++..+|++.+. +++++.++|.+|
T Consensus 116 ~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~-~~e~~~~~~~~R 194 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNR-DSDEATEDFMRR 194 (469)
T ss_dssp HHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTTS-CHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccCC-CHHHHHHHHHHH
Confidence 8885 468899999999999999999887 5568889999999999999999999877778999988 899999999999
Q ss_pred HHhhhcccccCCCC-----CeEEEeecccCCccceeeeccccccCCceeEEeeccCCCCccEEEecccccccccCCCcCC
Q 004941 475 LANYEKVYEPVDEG-----SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIGG 549 (722)
Q Consensus 475 i~~y~~~yEpl~e~-----~yik~i~~~~~~g~~~~~~~i~gyL~~riv~~L~n~~~~~~~IyLvRHGes~~n~~~~~~G 549 (722)
++.|++.|||++++ +|||++|+ |+++++|+++|||++||||||||+|.++++||||||||+.+|..++++|
T Consensus 195 ~~~y~~~ye~l~~~~~~~~~~ik~~d~----~~~~~~~~~~g~~~~~~~~~l~n~~~~~~~i~LvRHGet~~n~~~~~~g 270 (469)
T 1bif_A 195 IECYENSYESLDEEQDRDLSYIKIMDV----GQSYVVNRVADHIQSRIVYYLMNIHVTPRSIYLCRHGESELNLKGRIGG 270 (469)
T ss_dssp HHHHHTTCCCCCTTTTTTSCEEEEETT----TTEEEEECCCSHHHHHHHHHHTTCCCCCCCEEEEECSCBHHHHHTBCSS
T ss_pred HHHhccEeEECCccccCCcceEEEEcC----ccceeccCccccchhhHHHHHhccCCCCceEEEeccceeccccCCeeCC
Confidence 99999999999952 99999999 9999999999999999999999999999999999999999999899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhcCCCcccccccccccCCcCCCCCHHHHHhhChHH
Q 004941 550 DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRALDEINAGVCDGMTYEEIKKNMPEE 629 (722)
Q Consensus 550 D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~g~~v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~ 629 (722)
|.|||+.|++||++++++|... ...++.|||||++||+|||+.+ +.++..++.|+|+++|.|+|++++++.+.||+.
T Consensus 271 D~~Lt~~G~~qA~~l~~~l~~~--~~~~~~v~sSpl~Ra~qTA~~l-~~~~~~~~~L~E~~~G~~eg~~~~e~~~~~p~~ 347 (469)
T 1bif_A 271 DPGLSPRGREFSKHLAQFISDQ--NIKDLKVFTSQMKRTIQTAEAL-SVPYEQFKVLNEIDAGVCEEMTYEEIQDHYPLE 347 (469)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHH--TCTTCEEEECSSHHHHHHHTTS-SSCCEECGGGSCCCCGGGTTCBHHHHHHHCHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHh-CCCceECcccccccCCccCCCCHHHHHHHCHHH
Confidence 9999999999999999999876 5578999999999999999988 788889999999999999999999999999999
Q ss_pred HHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEC
Q 004941 630 YEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMG 709 (722)
Q Consensus 630 ~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~ 709 (722)
+..|..+++.+++|+|||+.++.+|+.+++.++.+ +++|||||||++|+++++++++.+.+.++.+.++++++++|++.
T Consensus 348 ~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~-~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~~~~~~v~~l~~~ 426 (469)
T 1bif_A 348 FALRDQDKYRYRYPKGESYEDLVQRLEPVIMELER-QENVLVICHQAVMRCLLAYFLDKAAEELPYLKCPLHTVLKLTPV 426 (469)
T ss_dssp HHHHHHCTTTCCCTTCCCHHHHHHHHHHHHHHHHH-CSSEEEEECHHHHHHHHHHHTTCCTTTGGGCCCCTTEEEEEEEC
T ss_pred HHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEeCHHHHHHHHHHHhCCCHHHhhcccCCCCEEEEEEEe
Confidence 99999999999999999999999999999999976 46899999999999999999999999999999999999999999
Q ss_pred CCceEEEEEec
Q 004941 710 VTGVQEKRYKL 720 (722)
Q Consensus 710 ~~g~~~~r~~l 720 (722)
.++|...+|++
T Consensus 427 ~~~~~~~~~~~ 437 (469)
T 1bif_A 427 AYGCKVESIFL 437 (469)
T ss_dssp SSSEEEEEEEC
T ss_pred CCCCceEEEec
Confidence 99999999886
No 3
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=100.00 E-value=9.2e-34 Score=285.42 Aligned_cols=187 Identities=29% Similarity=0.362 Sum_probs=171.9
Q ss_pred ccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cCCCcccc
Q 004941 529 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 603 (722)
Q Consensus 529 ~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g~~v~~~ 603 (722)
|+||||||||+.+|..++++| |.|||+.|++||++++++|. ..+++.|||||+.||+|||+++ .+.++..+
T Consensus 2 m~l~lvRHGet~~n~~~~~~g~~D~pLt~~G~~qA~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 77 (207)
T 1h2e_A 2 TTLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLE----AVELAAIYTSTSGRALETAEIVRGGRLIPIYQD 77 (207)
T ss_dssp EEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHTT----TSCCSEEEECSSHHHHHHHHHHHTTCSCCEEEC
T ss_pred CEEEEEeCcCCcccccccCCCCCCCCCCHHHHHHHHHHHHHHc----CCCCCEEEECccHHHHHHHHHHHhcCCCCeEEC
Confidence 589999999999999888888 99999999999999997765 4689999999999999999999 45788899
Q ss_pred cccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCcEEEEeCHHHHHHH
Q 004941 604 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRAL 681 (722)
Q Consensus 604 ~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~--~~~VLIVSHg~vIr~L 681 (722)
+.|+|+++|.|+|++.+++.+.||..+..|..++..+.+|+|||+.++.+|+..++.++... +++|||||||++|+++
T Consensus 78 ~~L~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~vlvVsHg~~i~~l 157 (207)
T 1h2e_A 78 ERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTL 157 (207)
T ss_dssp GGGSCCCCGGGTTCBHHHHHHHCHHHHHHHHHCGGGCCCSSSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEECHHHHHHH
T ss_pred cccccCCceecCCCCHHHHHHHCHHHHHHHhhCccccCCCCCccHHHHHHHHHHHHHHHHHhCCCCeEEEEcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999753 5789999999999999
Q ss_pred HHHHhCCCCCCCCCcc-cCCcEEEEEEECCCceEEEEEe
Q 004941 682 YAYFADRPLKEIPHIE-TPLHTIIEIQMGVTGVQEKRYK 719 (722)
Q Consensus 682 l~~l~g~~~~~~~~l~-~p~~sI~el~~~~~g~~~~r~~ 719 (722)
++++++.+...++.+. +++++++.|+....++....++
T Consensus 158 ~~~l~~~~~~~~~~~~~~~n~~i~~l~~~~~~~~l~~~n 196 (207)
T 1h2e_A 158 MAAFKDTPLDHLWSPPYMYGTSVTIIEVDGGTFHVAVEG 196 (207)
T ss_dssp HHHHTTCCGGGTTCSCCCCTTCEEEEEEETTEEEEEEEE
T ss_pred HHHHhCCCHHHhhhccCCCCCEEEEEEEECCEEEEEEEc
Confidence 9999999888888888 9999999999988777777665
No 4
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.1e-33 Score=283.38 Aligned_cols=190 Identities=23% Similarity=0.255 Sum_probs=165.8
Q ss_pred eeccCCCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhcCC
Q 004941 521 LVNTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGF 598 (722)
Q Consensus 521 L~n~~~~~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~g~ 598 (722)
|||++..+|+||||||||+.+|..+++.| |.|||+.|++||+.++++|... ...++.|||||+.||+|||+++ +.
T Consensus 3 ~m~M~~~~~~l~lvRHG~t~~n~~~~~~g~~D~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~~-~~ 79 (208)
T 2a6p_A 3 AMAMGVRNHRLLLLRHGETAWSTLGRHTGGTEVELTDTGRTQAELAGQLLGEL--ELDDPIVICSPRRRTLDTAKLA-GL 79 (208)
T ss_dssp ------CCCCEEEEECCCBTTGGGTBCCSSCCCCBCHHHHHHHHHHHHHHHTT--CCSSCEEEECSSHHHHHHHHHT-TC
T ss_pred ccccCCCceEEEEEeCCCCcccccCcCcCCCCCCCCHHHHHHHHHHHHHHhcC--CCCCCEEEECCcHHHHHHHHHh-CC
Confidence 67777767899999999999999888877 9999999999999999988643 2334999999999999999995 78
Q ss_pred Cc-ccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHh--CCCcEEEEeCH
Q 004941 599 PK-IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER--QRAPVVVISHQ 675 (722)
Q Consensus 599 ~v-~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~--~~~~VLIVSHg 675 (722)
++ ..++.|+|+++|.|+|++.+++.+.+|. +..|..++ |+|||+.++.+|+..++.++.. .+++|||||||
T Consensus 80 ~~~~~~~~L~E~~~G~~eg~~~~el~~~~p~-~~~~~~~~-----p~gEs~~~~~~R~~~~l~~l~~~~~~~~vlvVsHg 153 (208)
T 2a6p_A 80 TVNEVTGLLAEWDYGSYEGLTTPQIRESEPD-WLVWTHGC-----PAGESVAQVNDRADSAVALALEHMSSRDVLFVSHG 153 (208)
T ss_dssp CCSEECGGGCCCCCGGGTTCBHHHHHTTCTT-CCHHHHCC-----TTSCCHHHHHHHHHHHHHHHHHHTTTSCEEEEECH
T ss_pred CceeeccceeecccceeCCCCHHHHHHhCcc-hhhccCCC-----CCCCCHHHHHHHHHHHHHHHHHhCCCCcEEEEeCH
Confidence 88 8999999999999999999999999998 87887664 8999999999999999999976 56799999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceEEEEEe
Q 004941 676 AVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYK 719 (722)
Q Consensus 676 ~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~~~r~~ 719 (722)
++|+++++++++.+...++.+.+++++++.|++...++....++
T Consensus 154 ~~i~~l~~~l~~~~~~~~~~~~~~n~~v~~l~~~~~~~~l~~~n 197 (208)
T 2a6p_A 154 HFSRAVITRWVQLPLAEGSRFAMPTASIGICGFEHGVRQLAVLG 197 (208)
T ss_dssp HHHHHHHHHHTTCCGGGGGGBCCCTTEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHhCCCHHHhhhccCCCCEEEEEEEeCCceEEEEec
Confidence 99999999999998887778889999999999988888776665
No 5
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=100.00 E-value=1.9e-33 Score=283.49 Aligned_cols=188 Identities=27% Similarity=0.299 Sum_probs=169.3
Q ss_pred eccCCCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---c
Q 004941 522 VNTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A 596 (722)
Q Consensus 522 ~n~~~~~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~ 596 (722)
||.+..+++||||||||+.+|..++++| |.|||+.|++||+.++++|... ..+++.|||||+.||+|||+++ .
T Consensus 1 ~~~~~~~~~l~lvRHGet~~n~~~~~~g~~D~pLt~~G~~qA~~l~~~L~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~ 78 (211)
T 1fzt_A 1 MTTEAAPNLLVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSR--GYKFDIAFTSALQRAQKTCQIILEEV 78 (211)
T ss_dssp CCCTTSCCEEEECBCCCBHHHHHTBCCSSSCCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEEeCCCCcccccCcccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHhc
Confidence 6788888999999999999998888877 9999999999999999999865 4588999999999999999999 3
Q ss_pred C---CCcccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHh----CCCc
Q 004941 597 G---FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER----QRAP 668 (722)
Q Consensus 597 g---~~v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~----~~~~ 668 (722)
+ .++..++.|+|+++|.|+|++.+++.+.+|.. +..|..++ .+.+|+|||+.++.+|+..++.++.. .+++
T Consensus 79 ~~~~~~~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~w~~~~-~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~ 157 (211)
T 1fzt_A 79 GEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWRRSY-DIAPPNGESLKDTAERVLPYYKSTIVPHILKGEK 157 (211)
T ss_dssp TCTTSEEEEESTTSCCCCGGGTTCBHHHHHHHHHHHHHHHHHSSS-SCCSTTCCCHHHHHHHHHHHHHHHHTTHHHHTCC
T ss_pred CCCCCceEECcccccccCceecCCCHHHHHHhccHHHHHHHhhCC-CcCCcCCCCHHHHHHHHHHHHHHHHhhhhcCCCe
Confidence 3 67888999999999999999999999999865 66676654 78899999999999999999999854 3678
Q ss_pred EEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCc
Q 004941 669 VVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTG 712 (722)
Q Consensus 669 VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g 712 (722)
|||||||++|+++++++++.+...++.+.+++|+++.|++...+
T Consensus 158 vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~i~~l~~~~~~ 201 (211)
T 1fzt_A 158 VLIAAHGNSLRALIMDLEGLTGDQIVKRELATGVPIVYHLDKDG 201 (211)
T ss_dssp EEEESCHHHHHHHHHHHHTCCTTTSSSCCCCBSSCEEEEBCSSS
T ss_pred EEEEeChHHHHHHHHHHhCCCHHHHHhcCCCCCcEEEEEEcCCC
Confidence 99999999999999999999988888899999999999987653
No 6
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=99.98 E-value=3.5e-32 Score=282.18 Aligned_cols=191 Identities=24% Similarity=0.327 Sum_probs=165.1
Q ss_pred cCCCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cC-
Q 004941 524 THLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG- 597 (722)
Q Consensus 524 ~~~~~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g- 597 (722)
-++.+++||||||||+.+|..++++| |+|||+.|++||+.++++|... ...++.|||||++||+|||+++ .+
T Consensus 7 ~~~~~~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~ 84 (258)
T 3kkk_A 7 HHMTTYTLVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEK--NFKFDVVYTSVLKRAICTAWNVLKTADL 84 (258)
T ss_dssp ---CCEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTC
T ss_pred cccceeEEEEEECCCccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECchHHHHHHHHHHHHhcCC
Confidence 45778999999999999999999988 9999999999999999999764 4689999999999999999999 33
Q ss_pred --CCcccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCc------------------------CCCCCCCCCCHHH
Q 004941 598 --FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLD 650 (722)
Q Consensus 598 --~~v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d~------------------------~~~r~P~gES~~d 650 (722)
.++..++.|+|+++|.|+|++.+++.+.||+. +..|..+. ..+++|+|||+.+
T Consensus 85 ~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~~ 164 (258)
T 3kkk_A 85 LHVPVVKTWRLNERHCGSLQGLNKSETAKKYGEEQVKIWRRSYDIPPPKLDKEDNRWPGHNVVYKNVPKDALPFTECLKD 164 (258)
T ss_dssp TTSCEEECGGGCCCCCGGGTTSBHHHHHHHTCHHHHHHHHHCSSCCCCCCCTTSTTCGGGCGGGTTSCGGGSCSCCCHHH
T ss_pred CCCCeeEccccceeccCcccCCCHHHHHHHhHHHHHHHHhhhcccCCcccccccccccccccccccccccCCCCCCCHHH
Confidence 68889999999999999999999999999976 55565421 1234789999999
Q ss_pred HHHHHHHHHHHHH----hCCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceEEE
Q 004941 651 VIQRLEPVIIELE----RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEK 716 (722)
Q Consensus 651 v~~Rl~~~l~eL~----~~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~~~ 716 (722)
+.+|+..++.++. ..+++|||||||++|+++++++++.+...+..+.+++|+++.|+++..+....
T Consensus 165 ~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 234 (258)
T 3kkk_A 165 TVERVLPFWFDHIAPDILANKKVMVAAHGNSLRGLVKHLDNLSEADVLELNIPTGVPLVYELDENLKPIK 234 (258)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCHHHHHHCCCCTTCCEEEEECTTCCEEE
T ss_pred HHHHHHHHHHHHHhhhccCCCEEEEEcCHHHHHHHHHHHhCCCHHHHhhccCCCCceEEEEECCCCceee
Confidence 9999999999953 35789999999999999999999999888888999999999999987644333
No 7
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=99.98 E-value=9.8e-32 Score=278.82 Aligned_cols=190 Identities=23% Similarity=0.283 Sum_probs=165.4
Q ss_pred CCCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cC--
Q 004941 525 HLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG-- 597 (722)
Q Consensus 525 ~~~~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g-- 597 (722)
|..+.+.||||||||.+|..++++| |+|||+.|++||+.++++|... ..+++.|||||+.||+|||+++ .+
T Consensus 6 ~~~~~~~~lvRHGeT~~N~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~ 83 (257)
T 3gp3_A 6 HHHMYKLVLIRHGESTWNKENRFTGWVDVDLTEQGNREARQAGQLLKEA--GYTFDIAYTSVLKRAIRTLWHVQDQMDLM 83 (257)
T ss_dssp ---CEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCT
T ss_pred ccceeeEEEEECCCCcccccCccCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEeCChHHHHHHHHHHHHhcCCC
Confidence 4456789999999999999999999 9999999999999999999764 4689999999999999999999 33
Q ss_pred -CCcccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCcC------------------------CCCCCCCCCHHHH
Q 004941 598 -FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDV 651 (722)
Q Consensus 598 -~~v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d~~------------------------~~r~P~gES~~dv 651 (722)
.++.+++.|+|+++|.|+|++.+++.+.||+. +..|..+.. .+++|+|||+.++
T Consensus 84 ~~~i~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~~w~~~~~~~pp~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~~~ 163 (257)
T 3gp3_A 84 YVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLTECLKDT 163 (257)
T ss_dssp TSCEEECGGGSCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCTTCCCCCCCTTCTTCSTTCGGGTTSCGGGSCSSCCHHHH
T ss_pred CCceeECCCccccCCccccCCCHHHHHHHhhHHHHHHHHhccccCCcccccccccccccccccccccccCCCCCCCHHHH
Confidence 78899999999999999999999999999976 555654311 2357899999999
Q ss_pred HHHHHHHHHHHHh----CCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceEEE
Q 004941 652 IQRLEPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEK 716 (722)
Q Consensus 652 ~~Rl~~~l~eL~~----~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~~~ 716 (722)
.+|+..++.++.. .+++|||||||++|+++++++++.+...+..+.+++|+++.|++...+....
T Consensus 164 ~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~i~~ll~~l~g~~~~~~~~~~~~n~sv~~l~~~~~~~~~~ 232 (257)
T 3gp3_A 164 VARVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDADIVGLNIPNGVPLVYELDESLTPIR 232 (257)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCTTGGGGCCCCTTCCEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEeCcHHHHHHHHHHhCCCHHHHhhccCCCCeeEEEEECCCcceee
Confidence 9999999999743 5789999999999999999999999999999999999999999987654333
No 8
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=99.97 E-value=4e-32 Score=274.94 Aligned_cols=188 Identities=18% Similarity=0.200 Sum_probs=161.1
Q ss_pred CCCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cCCC
Q 004941 525 HLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFP 599 (722)
Q Consensus 525 ~~~~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g~~ 599 (722)
.|++++||||||||+.+| +++.| |.|||+.|++||+++++.| +.+++.|||||+.||+|||+++ .+.+
T Consensus 2 ~m~~~~i~lvRHGet~~n--~~~~g~~D~pLt~~G~~QA~~~~~~l-----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~ 74 (213)
T 3hjg_A 2 SLKTLNIYLMRHGKVDAA--PGLHGQTDLKVKEAEQQQIAMAWKTK-----GYDVAGIISSPLSRCHDLAQILAEQQLLP 74 (213)
T ss_dssp --CEEEEEEEECCCCSSC--SBCCSSSCCCCCHHHHHHHHHHHHHT-----TCCCSCEEECSSHHHHHHHHHHHHHHTCC
T ss_pred CCceeEEEEECCCCcCCC--CcccCCCCCCCCHHHHHHHHHHHHhc-----CCCCCEEEECChHHHHHHHHHHHhccCCC
Confidence 356789999999999987 35555 9999999999999998665 3689999999999999999999 5789
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC-CCcEEEEeCHHHH
Q 004941 600 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-RAPVVVISHQAVL 678 (722)
Q Consensus 600 v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~-~~~VLIVSHg~vI 678 (722)
+.+++.|+|+++|.|+|++.+++.+.+|. +..|+.++..+++|+|||+.++.+|+..++.++... .++|||||||++|
T Consensus 75 ~~~~~~L~E~~~G~~eg~~~~e~~~~~~~-~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~vlvVsHg~~i 153 (213)
T 3hjg_A 75 MTTEDDLQEMDFGDFDGMPFDLLTEHWKK-LDAFWQSPAHHSLPNAESLSTFSQRVSRAWSQIINDINDNLLIVTHGGVI 153 (213)
T ss_dssp EEECGGGSCCCCTTSTTCBTTHHHHSCCC-THHHHHCGGGCCCTTCCCHHHHHHHHHHHHHHHHHHCCSCEEEEECHHHH
T ss_pred cEEccccEeCcCCccCCcCHHHHHHhhHH-HHHHHhCcccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHH
Confidence 99999999999999999999999988764 556667888899999999999999999999998653 4899999999999
Q ss_pred HHHHHHHhCCCC---CCCCCcccCCcEEEEEEECCCceEEEEEec
Q 004941 679 RALYAYFADRPL---KEIPHIETPLHTIIEIQMGVTGVQEKRYKL 720 (722)
Q Consensus 679 r~Ll~~l~g~~~---~~~~~l~~p~~sI~el~~~~~g~~~~r~~l 720 (722)
+++++++++.+. ..+..+.+++|++++|+....+.....++.
T Consensus 154 ~~l~~~l~g~~~~~~~~~~~~~~~n~si~~l~~~~~~~~~~~l~~ 198 (213)
T 3hjg_A 154 RIILAHVLGVDWRNPQWYSTLAIGNASVTHITITIDDQIYASVRS 198 (213)
T ss_dssp HHHHHHHTTCCTTCTHHHHHBCCCTTEEEEEEEEESSSEEEEECS
T ss_pred HHHHHHHhCCCccccchhcccccCCCEEEEEEEeCCCCceEEEEe
Confidence 999999999882 223467899999999999777765444443
No 9
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=99.97 E-value=1.1e-31 Score=277.23 Aligned_cols=182 Identities=25% Similarity=0.307 Sum_probs=159.4
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cC---CC
Q 004941 528 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 599 (722)
Q Consensus 528 ~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g---~~ 599 (722)
|++||||||||+.+|..++++| |.|||+.|++||+.++++|... ..+++.|||||+.||+|||+++ .+ .+
T Consensus 2 M~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~l~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 79 (249)
T 1e58_A 2 VTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEE--GYSFDFAYTSVLKRAIHTLWNVLDELDQAWLP 79 (249)
T ss_dssp CEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTTSC
T ss_pred ceEEEEEeCCCCcccccCCccCcCCCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEECCcHHHHHHHHHHHHhcCCCCCC
Confidence 4789999999999999888888 9999999999999999998754 4689999999999999999998 23 67
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCc------------------------CCCCCCCCCCHHHHHHH
Q 004941 600 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQR 654 (722)
Q Consensus 600 v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d~------------------------~~~r~P~gES~~dv~~R 654 (722)
+..++.|+|+++|.|+|++.+++.+.+|.. +..|..+. ..+++|+|||+.++.+|
T Consensus 80 ~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R 159 (249)
T 1e58_A 80 VEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR 159 (249)
T ss_dssp EEECGGGCCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCTTCCCCCCCTTSTTCGGGSGGGTTCCTTTSCSCCCHHHHHHH
T ss_pred eeeCcccccccCcccCCCcHHHHHHHhhHHHHHHHHhccccCCcccccccccccccchhhhccccCCCCCCCCHHHHHHH
Confidence 888999999999999999999999999865 55565431 12357899999999999
Q ss_pred HHHHHHH-HHh---CCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCC
Q 004941 655 LEPVIIE-LER---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT 711 (722)
Q Consensus 655 l~~~l~e-L~~---~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~ 711 (722)
+..++.+ +.. .+++|||||||++|+++++++++.+...++.+.+++|+++.|+....
T Consensus 160 v~~~l~~~i~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~n~~~~~l~~~~~ 220 (249)
T 1e58_A 160 VIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEFDEN 220 (249)
T ss_dssp HHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCHHHHHHCCCCTTCCEEEEECTT
T ss_pred HHHHHHHHHHhhccCCCEEEEEcChHHHHHHHHHHhCCCHHHHhhccCCCceeEEEEECCC
Confidence 9999999 643 56799999999999999999999988777778899999999998764
No 10
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=99.97 E-value=1.4e-31 Score=280.73 Aligned_cols=191 Identities=23% Similarity=0.251 Sum_probs=167.5
Q ss_pred CCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cC---C
Q 004941 527 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---F 598 (722)
Q Consensus 527 ~~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g---~ 598 (722)
.+++||||||||+.+|..+++.| |+|||+.|++||+.++++|... ...++.|||||++||+|||+++ .+ .
T Consensus 26 mm~~i~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~d~v~sSpl~Ra~qTA~~i~~~~~~~~~ 103 (274)
T 4emb_A 26 FMYKLVLVRHGESEWNKENLFTGWTDVKLSDKGIDEAVEAGLLLKQE--GYSFDIAFSSLLSRANDTLNIILRELGQSYI 103 (274)
T ss_dssp CCEEEEEEECCCBTTTTTTCCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTS
T ss_pred hceEEEEEeCCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCC
Confidence 35899999999999999999888 9999999999999999999764 5689999999999999999999 33 6
Q ss_pred CcccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCc------------------------CCCCCCCCCCHHHHHH
Q 004941 599 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQ 653 (722)
Q Consensus 599 ~v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d~------------------------~~~r~P~gES~~dv~~ 653 (722)
++..++.|+|+++|.|+|++.+++.+.||.. +..|..+. ..+++|+|||+.++.+
T Consensus 104 ~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~pp~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~~~~~ 183 (274)
T 4emb_A 104 SVKKTWRLNERHYGALQGLNKSETAAKYGEDKVLIWRRSYDVPPMSLDESDDRHPIKDPRYKHIPKRELPSTECLKDTVA 183 (274)
T ss_dssp EEEECGGGSCCCCGGGTTCCHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTCGGGSGGGTTSCGGGSCSCCCHHHHHH
T ss_pred CeeECccccccccccccCCCHHHHHHHhHHHHHHHHHhccccCCcccccccccccccccccccccccCCCCCCCHHHHHH
Confidence 7889999999999999999999999999975 55565421 1236789999999999
Q ss_pred HHHHHHHHHHh----CCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceEEEEEe
Q 004941 654 RLEPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYK 719 (722)
Q Consensus 654 Rl~~~l~eL~~----~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~~~r~~ 719 (722)
|+..++.++.. .+++|||||||++|++|++++++.+.+.+..+.+++|+++.|++...++....+.
T Consensus 184 Rv~~~l~~l~~~~~~~~~~vlvVsHg~~i~~ll~~l~g~~~~~~~~~~~~n~sv~~l~~~~~~~~~~~~~ 253 (274)
T 4emb_A 184 RVIPYWTDEIAKEVLEGKKVIVAAHGNSLRALVKYFDNLSEEDVLKLNIPTGIPLVYELDKDLNPIKHYY 253 (274)
T ss_dssp HHHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHHTCCHHHHHHCCCCTTCCEEEEECTTCCEEEEEE
T ss_pred HHHHHHHHHHhhhhcCCCEEEEEeCHHHHHHHHHHHhCCCHHHHhhccCCCCeEEEEEEcCCCcEEEeee
Confidence 99999999743 5789999999999999999999999888888999999999999998877666544
No 11
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=99.97 E-value=3.8e-31 Score=276.68 Aligned_cols=185 Identities=23% Similarity=0.328 Sum_probs=161.2
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cC---CC
Q 004941 528 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 599 (722)
Q Consensus 528 ~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g---~~ 599 (722)
|++||||||||+.+|..++++| |.|||+.|++||+.++++|... ..+++.|||||+.||+|||+++ .+ .+
T Consensus 20 M~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 97 (267)
T 3d8h_A 20 TYKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEK--GFKFDVVYTSVLKRAIMTTWTVLKELGNINCP 97 (267)
T ss_dssp CEEEEEEECCCBTTTTTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTTSC
T ss_pred ceEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCCC
Confidence 4799999999999999988888 9999999999999999998754 4689999999999999999998 23 67
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCc--------------------C----CCCCCCCCCHHHHHHH
Q 004941 600 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK--------------------L----RYRYPRGESYLDVIQR 654 (722)
Q Consensus 600 v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d~--------------------~----~~r~P~gES~~dv~~R 654 (722)
+.+++.|+|+++|.|+|++.+++.+.||.. +..|..+. + .+.+|+|||+.++.+|
T Consensus 98 i~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R 177 (267)
T 3d8h_A 98 IINHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKSDPRWPGNELIYKGICPSCLPTTECLKDTVER 177 (267)
T ss_dssp EEECGGGSCCCCGGGTTCBHHHHHHHSCHHHHHHHHHCSSCCCCCCCTTSTTSGGGSGGGTTSCGGGSCSCCCHHHHHHH
T ss_pred eeECcccccccCCcccCCCHHHHHHhhhHHHHHHHHhccccCCcccccccccccccchhhhccccCCCCCCCCHHHHHHH
Confidence 888999999999999999999999999975 45564321 0 1356899999999999
Q ss_pred HHHHHHH-HHh---CCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceE
Q 004941 655 LEPVIIE-LER---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQ 714 (722)
Q Consensus 655 l~~~l~e-L~~---~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~ 714 (722)
+..++.+ +.. .+++|||||||++|+++++++++.+...++.+.+++|+++.|++...+..
T Consensus 178 v~~~l~~~i~~~~~~~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~~~n~~v~~l~~~~~~~~ 241 (267)
T 3d8h_A 178 VKPYFEDVIAPSIMSGKSVLVSAHGNSLRALLYLLEGMTPEQILEVNIPTACPLVLELDDYLKV 241 (267)
T ss_dssp HHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHHTCCHHHHTTCCCCTTCCEEEEECTTSCE
T ss_pred HHHHHHHHHHhhccCCCeEEEEeCHHHHHHHHHHHhCCCHHHhhcccCCCCeEEEEEECCCccE
Confidence 9999999 543 56799999999999999999999988778888999999999998766444
No 12
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=99.97 E-value=2.6e-31 Score=277.87 Aligned_cols=183 Identities=26% Similarity=0.339 Sum_probs=159.8
Q ss_pred CCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cC---
Q 004941 526 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG--- 597 (722)
Q Consensus 526 ~~~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g--- 597 (722)
|++++||||||||+.+|..++++| |.|||+.|++||+.++++|... ...++.|||||+.||+|||+++ .+
T Consensus 1 M~~~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~ 78 (267)
T 2hhj_A 1 MSKYKLIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKAL--NFEFDLVFTSVLNRSIHTAWLILEELGQEW 78 (267)
T ss_dssp -CCEEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTT
T ss_pred CCceEEEEEeCCCCCccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCcCEEEECCcHHHHHHHHHHHHhcCCCC
Confidence 356899999999999999888888 9999999999999999998764 4689999999999999999999 22
Q ss_pred CCcccccccccccCCcCCCCCHHHHHhhChHH-HHHHhc--------------------CcCCC--------CCCCCCCH
Q 004941 598 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKK--------------------DKLRY--------RYPRGESY 648 (722)
Q Consensus 598 ~~v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~--------------------d~~~~--------r~P~gES~ 648 (722)
.++..++.|+|+++|.|+|++.+++.+.||.. +..|.. .+..+ .+|+|||+
T Consensus 79 ~~v~~~~~L~E~~~G~~eG~~~~e~~~~~p~~~~~~w~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~p~gEs~ 158 (267)
T 2hhj_A 79 VPVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESL 158 (267)
T ss_dssp SCEEECGGGSCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTHHHHHTCGGGTSSSSCGGGSCSSCCH
T ss_pred CCeeEcccccccccCCCCCCCHHHHHHHhhHHHHHHHHhcccCCCCcccccccccccccccccccccccccCCCCCCCCH
Confidence 68889999999999999999999999999875 455642 11122 26899999
Q ss_pred HHHHHHHHHHHHH-HHh---CCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECC
Q 004941 649 LDVIQRLEPVIIE-LER---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV 710 (722)
Q Consensus 649 ~dv~~Rl~~~l~e-L~~---~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~ 710 (722)
.++.+|+..++.+ +.. .+++|||||||++|+++++++++.+...++.+.+++|+++.|+++.
T Consensus 159 ~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~~~n~s~~~~~~~~ 224 (267)
T 2hhj_A 159 KDVLERLLPYWNERIAPEVLRGKTILISAHGNSSRALLKHLEGISDEDIINITLPTGVPILLELDE 224 (267)
T ss_dssp HHHHHHHHHHHHHHTHHHHHTTCCEEEEECHHHHHHHHHHHHTCCTTGGGGCCCCTTCCEEEEECT
T ss_pred HHHHHHHHHHHHHHHHhhccCCCEEEEEcCcHHHHHHHHHHhCCCHHHhhccccCCCeEEEEEEcC
Confidence 9999999999999 643 4679999999999999999999999988888999999999999875
No 13
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=99.97 E-value=3.5e-31 Score=271.97 Aligned_cols=183 Identities=24% Similarity=0.325 Sum_probs=159.0
Q ss_pred ccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cC---CCc
Q 004941 529 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 600 (722)
Q Consensus 529 ~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g---~~v 600 (722)
|+||||||||+.+|..++++| |.|||+.|++||+.++++|+.. ..+++.|||||+.||+|||+++ .+ .++
T Consensus 1 m~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 78 (240)
T 1qhf_A 1 PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEK--KVYPDVLYTSKLSRAIQTANIALEKADRLWIPV 78 (240)
T ss_dssp CEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTSCE
T ss_pred CEEEEEECCCcccccCCcccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCcCEEEECCcHHHHHHHHHHHHhcCCCCCCe
Confidence 579999999999999888888 9999999999999999998764 4689999999999999999998 22 678
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCc------------------------CCCCCCCCCCHHHHHHHH
Q 004941 601 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQRL 655 (722)
Q Consensus 601 ~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d~------------------------~~~r~P~gES~~dv~~Rl 655 (722)
.+++.|+|+++|.|+|++.+++.+.||.. +..|..+. ....+|+|||+.++.+|+
T Consensus 79 ~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~ 158 (240)
T 1qhf_A 79 NRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRL 158 (240)
T ss_dssp EECGGGSCCCCGGGTTCBHHHHHHHHHHHHHHHHHHCSSCCCCCCCTTSTTCCTTCGGGTTSCGGGSCSSCCHHHHHHHH
T ss_pred eeCcccccccCCcccCCcHHHHHHHhhHHHHHHHhhccccCCccccccchhhcccchhhcccccCCCCCCCCHHHHHHHH
Confidence 88999999999999999999999999865 45554321 013468999999999999
Q ss_pred HHHHHH-HHh---CCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceE
Q 004941 656 EPVIIE-LER---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQ 714 (722)
Q Consensus 656 ~~~l~e-L~~---~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~ 714 (722)
..++.+ +.. .+++|||||||++|+++++++++.+...++.+.+++|+++.|+.+ .+|.
T Consensus 159 ~~~l~~~i~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 220 (240)
T 1qhf_A 159 LPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELD-ENLK 220 (240)
T ss_dssp HHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHHTCCTTTGGGCCCCTTSCEEEEBC-TTSC
T ss_pred HHHHHHHHHhhccCCCEEEEEeCHHHHHHHHHHHhCCCHHHhhcccCCCCeeEEEEEc-CCCC
Confidence 999998 643 467899999999999999999999998888899999999999987 3443
No 14
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET: CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Probab=99.97 E-value=5e-31 Score=274.89 Aligned_cols=183 Identities=23% Similarity=0.268 Sum_probs=158.8
Q ss_pred CCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cC---C
Q 004941 527 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---F 598 (722)
Q Consensus 527 ~~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g---~ 598 (722)
+|++||||||||+.+|..++++| |.|||+.|++||+.++++|... ...++.|||||+.||+|||+++ .+ .
T Consensus 2 ~M~~l~LvRHGqt~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~ 79 (262)
T 1yfk_A 2 AAYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDA--GYEFDICFTSVQKRAIRTLWTVLDAIDQMWL 79 (262)
T ss_dssp -CEEEEEEECCCBTTTTTTBCCTTSCCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEECSCHHHHHHHHHHHHHTTCTTS
T ss_pred CceEEEEEeCCCcccccccCcCCCCCCCCCHHHHHHHHHHHHHHHhC--CCCCCEEEECCcHHHHHHHHHHHHhcCCCCC
Confidence 45799999999999999998888 9999999999999999999765 5689999999999999999998 23 6
Q ss_pred CcccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCc----------------------C----CCCCCCCCCHHHH
Q 004941 599 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK----------------------L----RYRYPRGESYLDV 651 (722)
Q Consensus 599 ~v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d~----------------------~----~~r~P~gES~~dv 651 (722)
++..++.|+|+++|.|+|++.+++.+.||.. +..|..+. + ...+|+|||+.++
T Consensus 80 ~v~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~~i~~d~~~~~~~~~~~p~gEs~~~~ 159 (262)
T 1yfk_A 80 PVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKDT 159 (262)
T ss_dssp CEEECGGGSCCCCGGGTTSBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTHHHHHTCGGGTTSCTTTSCSCCCHHHH
T ss_pred CeeeCcccccccCcccCCCcHHHHHHHccHHHHHHHHhccccCCCcccccccccccccccccccccccCCCCCCCCHHHH
Confidence 7888999999999999999999999999865 45554321 0 1256899999999
Q ss_pred HHHHHHHHHHHH----hCCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCC
Q 004941 652 IQRLEPVIIELE----RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT 711 (722)
Q Consensus 652 ~~Rl~~~l~eL~----~~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~ 711 (722)
.+|+..++.++. ..+++|||||||++|+++++++++.+...++.+.+++|+++.|+++..
T Consensus 160 ~~Rv~~~l~~li~~~~~~~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 223 (262)
T 1yfk_A 160 IARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNLPTGIPIVYELDKN 223 (262)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHHHTCCHHHHHTCCCCSSSCEEEEECTT
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEEcChHHHHHHHHHHhCCCHHHHhccCCCCCeEEEEEEcCC
Confidence 999999999953 357799999999999999999999988777788999999999998764
No 15
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.45A {Mycobacterium leprae}
Probab=99.97 E-value=3.2e-31 Score=277.25 Aligned_cols=185 Identities=25% Similarity=0.316 Sum_probs=162.4
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cC---CC
Q 004941 528 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 599 (722)
Q Consensus 528 ~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g---~~ 599 (722)
+++||||||||+.+|..+++.| |+|||+.|++||+.++++|... ...++.|||||++||+|||+++ .+ .+
T Consensus 27 ~~~i~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 104 (268)
T 4eo9_A 27 TATLILLRHGESDWNARNLFTGWVDVGLTDKGRAEAVRSGELLAEH--NLLPDVLYTSLLRRAITTAHLALDTADWLWIP 104 (268)
T ss_dssp CEEEEEEECCCBHHHHTTCCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTSC
T ss_pred ceEEEEEECCccccccCCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHhcCCCCCC
Confidence 4789999999999999999888 9999999999999999998764 5689999999999999999998 33 78
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCcCCC----------------------CCCCCCCHHHHHHHHH
Q 004941 600 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKLRY----------------------RYPRGESYLDVIQRLE 656 (722)
Q Consensus 600 v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d~~~~----------------------r~P~gES~~dv~~Rl~ 656 (722)
+.+++.|+|+++|.|+|++.+++.+.||.. +..|..+.... ++|+|||+.++.+|+.
T Consensus 105 ~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~gEs~~~~~~Rv~ 184 (268)
T 4eo9_A 105 VRRSWRLNERHYGALQGLDKAVTKARYGEERFMAWRRSYDTPPPPIEKGSEFSQDADPRYTDIGGGPLTECLADVVTRFL 184 (268)
T ss_dssp EEECGGGSCCCCGGGTTCCHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTCCTTCGGGGGGTTCCSCCCHHHHHHHHH
T ss_pred eEECccccccccCCcCCCCHHHHHHHccHHHHHHhhcccccCCccccccccccccccccccccCCCCCCCCHHHHHHHHH
Confidence 899999999999999999999999999975 56666542211 3589999999999999
Q ss_pred HHHHHHH----hCCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceE
Q 004941 657 PVIIELE----RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQ 714 (722)
Q Consensus 657 ~~l~eL~----~~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~ 714 (722)
.++.++. ..+++|||||||++|+++++++++.+.+.++.+.+++++++.|+++..+..
T Consensus 185 ~~l~~~i~~~~~~~~~vlvVsHg~~i~~l~~~l~g~~~~~~~~~~~~n~~i~~l~~~~~~~~ 246 (268)
T 4eo9_A 185 PYFTDVIVPDLRTGRTVLIVAHGNSLRALVKHLDEMSDDEVVGLNVPTGIPLRYDLDADLRP 246 (268)
T ss_dssp HHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCHHHHHTCCCCSSCCEEEEECTTSCB
T ss_pred HHHHHHHHHhccCCCEEEEEeCHHHHHHHHHHHhCCCHHHHhhccCCCCeEEEEEECCCCcE
Confidence 9998742 257899999999999999999999998888899999999999999876543
No 16
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=99.97 E-value=2.3e-30 Score=263.55 Aligned_cols=178 Identities=14% Similarity=0.097 Sum_probs=152.5
Q ss_pred ccCCCCccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cCCC
Q 004941 523 NTHLTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFP 599 (722)
Q Consensus 523 n~~~~~~~IyLvRHGes~~n~~~~~~GD~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g~~ 599 (722)
|++-++|+||||||||+.+|..+++ .|.|||+.|++||+.++++|... +++.|||||+.||+|||+++ .+.+
T Consensus 16 ~~~~~mm~l~LvRHGet~~n~~~~~-~D~pLt~~G~~QA~~l~~~L~~~----~~d~i~sSpl~Ra~qTA~~i~~~~~~~ 90 (219)
T 2qni_A 16 NLYFQGMHALYITHPQVKIDPAVPV-PEWGLSERGAERAREASRLPWAK----ALRRIVSSAETKAIETAHMLAETSGAA 90 (219)
T ss_dssp -----CCEEEEEECCCBCCCSSSCG-GGCCBCHHHHHHHHHHHTSHHHH----TCCEEEECSSHHHHHHHHHHTTTTCCE
T ss_pred hhhhcCcEEEEEeCCCCcccccCcc-CCCCcCHHHHHHHHHHHHHHhcC----CCCEEEECCcHHHHHHHHHHHHhcCCC
Confidence 4555568999999999999987766 49999999999999999988754 78999999999999999999 4678
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC---CCcEEEEeCHH
Q 004941 600 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ---RAPVVVISHQA 676 (722)
Q Consensus 600 v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~---~~~VLIVSHg~ 676 (722)
+.+++.|+|+++|.|+|++.+++. +.+..|..++. +.+|+|||+.++.+|+..++.++..+ .++|||||||+
T Consensus 91 ~~~~~~L~E~~~G~~eg~~~~~~~----~~~~~~~~~~~-~~~p~gEs~~~~~~Rv~~~l~~l~~~~~~~~~vlvVsHg~ 165 (219)
T 2qni_A 91 IEIIEAMHENDRSATGFLPPPEFE----KAADWFFAHPE-ESFQGWERAIDAQARIVEAVKAVLDRHDARQPIAFVGHGG 165 (219)
T ss_dssp EEECGGGCCCCCGGGCCCCHHHHH----HHHHHHHHCTT-SCSTTCCCHHHHHHHHHHHHHHHHHTCCTTSCEEEEECHH
T ss_pred EEECcccccCCCccccCccHHHHH----HHHHHHHhCcc-cCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEeCHH
Confidence 889999999999999999988864 45667777654 77899999999999999999999764 25899999999
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECC
Q 004941 677 VLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV 710 (722)
Q Consensus 677 vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~ 710 (722)
+|+++++++++.+...++.+.++++++++|++..
T Consensus 166 ~i~~l~~~l~~~~~~~~~~~~~~n~si~~l~~~~ 199 (219)
T 2qni_A 166 VGTLLKCHIEGRGISRSKDQPAGGGNLFRFSIAE 199 (219)
T ss_dssp HHHHHHHHHHTCCCCCC--CCTTSCEEEEEEHHH
T ss_pred HHHHHHHHHhCcCHHHHhhccCCCeeEEEEEecC
Confidence 9999999999999888888899999999998754
No 17
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=99.97 E-value=8.4e-31 Score=274.26 Aligned_cols=181 Identities=27% Similarity=0.350 Sum_probs=157.7
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cC---CC
Q 004941 528 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 599 (722)
Q Consensus 528 ~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g---~~ 599 (722)
+++||||||||+.+|..+++.| |.|||+.|++||+.++++|... +..++.|||||++||+|||+++ .+ .+
T Consensus 4 m~~l~LvRHGet~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 81 (265)
T 1rii_A 4 TGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEH--DLLPDVLYTSLLRRAITTAHLALDSADRLWIP 81 (265)
T ss_dssp CCEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSCHHHHHHHHHHHHHTTCTTSC
T ss_pred ceEEEEEeCCCCcccccCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHHcCCCCCC
Confidence 5799999999999999988888 9999999999999999998754 5689999999999999999998 33 67
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCcC------------------CCC----CCCCCCHHHHHHHHH
Q 004941 600 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------RYR----YPRGESYLDVIQRLE 656 (722)
Q Consensus 600 v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~-~~~~~~d~~------------------~~r----~P~gES~~dv~~Rl~ 656 (722)
+..++.|+|+++|.|+|++.+++.+.||.. +..|..+.. .|. .|+|||+.++.+|+.
T Consensus 82 v~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~p~gEs~~~~~~Rv~ 161 (265)
T 1rii_A 82 VRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGGPLTECLADVVARFL 161 (265)
T ss_dssp EEECGGGSCCCCGGGTTSBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTCTTCCTTCGGGGGGTTCCSCCCHHHHHHHHH
T ss_pred eeECccccccccccccCCCHHHHHHHchHHHHHHHHhccccCCCccccccccccccchhhccCCCCCCCCCHHHHHHHHH
Confidence 888999999999999999999999999865 455653210 111 189999999999999
Q ss_pred HHHHH-HHh---CCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECC
Q 004941 657 PVIIE-LER---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV 710 (722)
Q Consensus 657 ~~l~e-L~~---~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~ 710 (722)
+++.+ |.. .+++|||||||++|++|++++++.+...++.+.+++|+++.|+++.
T Consensus 162 ~~l~~~i~~~~~~~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~i~~~~~~~~~~~~ 219 (265)
T 1rii_A 162 PYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDS 219 (265)
T ss_dssp HHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCHHHHHHCCCCSSCCEEEEBCT
T ss_pred HHHHHHHHHhccCCCeEEEEeChHHHHHHHHHHcCCCHHHHhhcCCCCCeEEEEEECC
Confidence 99998 643 5779999999999999999999998877778899999999998864
No 18
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.40A {Thermus thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A 2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A 2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A 2enw_A ...
Probab=99.96 E-value=2.4e-30 Score=254.71 Aligned_cols=164 Identities=27% Similarity=0.357 Sum_probs=148.0
Q ss_pred ccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhcCCCccccccc
Q 004941 529 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRAL 606 (722)
Q Consensus 529 ~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~g~~v~~~~~L 606 (722)
|+||||||||+.+|..+++.| |.|||+.|++||+.++++|. ..+ |||||+.||+|||+++ +.++..++.|
T Consensus 1 m~l~lvRHG~t~~n~~~~~~g~~d~pLt~~G~~qA~~l~~~l~----~~~---i~sSpl~Ra~qTA~~l-~~~~~~~~~L 72 (177)
T 1v37_A 1 MELWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALP----SLP---AFSSDLLRARRTAELA-GFSPRLYPEL 72 (177)
T ss_dssp CEEEEEECCCCHHHHHTBCCSSCCCCCCHHHHHHHHHHTTTSC----SCC---EEECSSHHHHHHHHHT-TCCCEECGGG
T ss_pred CEEEEEeCCCCcccccCcccCCCCCCcCHHHHHHHHHHHHHhc----CCC---EEECCcHHHHHHHHHh-CCCcEECccc
Confidence 579999999999998888877 99999999999999997664 323 9999999999999994 7888999999
Q ss_pred ccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEeCHHHHHHHHHHHh
Q 004941 607 DEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFA 686 (722)
Q Consensus 607 ~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~~~~VLIVSHg~vIr~Ll~~l~ 686 (722)
+|+++|.|+|++.+++.+.||+.+..| ..+.+|+|||+.++.+|+..++.++ . ++|||||||++|++++++++
T Consensus 73 ~E~~~G~~eg~~~~e~~~~~~~~~~~~----~~~~~p~gEs~~~~~~R~~~~l~~l-~--~~vlvVsHg~~i~~l~~~l~ 145 (177)
T 1v37_A 73 REIHFGALEGALWETLDPRYKEALLRF----QGFHPPGGESLSAFQERVFRFLEGL-K--APAVLFTHGGVVRAVLRALG 145 (177)
T ss_dssp SCCCCGGGTTCBGGGSCHHHHHHHHTT----CSCCCTTSCCHHHHHHHHHHHHHHC-C--SCEEEEECHHHHHHHHHHTT
T ss_pred eeCCCCcccCCCHHHHHHHCHHHHHHh----hcCCCCCCCCHHHHHHHHHHHHHHc-C--CCEEEEcCHHHHHHHHHHHc
Confidence 999999999999999999999988777 4678899999999999999999999 5 79999999999999999999
Q ss_pred CCCCCCCCCcccCCcEEEEEEECCCceE
Q 004941 687 DRPLKEIPHIETPLHTIIEIQMGVTGVQ 714 (722)
Q Consensus 687 g~~~~~~~~l~~p~~sI~el~~~~~g~~ 714 (722)
+ .+.+++++++.|++...+|.
T Consensus 146 ~-------~~~~~~~~i~~~~~~~~~~~ 166 (177)
T 1v37_A 146 E-------DGLVPPGSAVAVDWPRRVLV 166 (177)
T ss_dssp S-------CCCCCTTCEEEEETTTEEEE
T ss_pred C-------CCCCCCCEEEEEEEeCCeeE
Confidence 8 35789999999999876664
No 19
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=99.96 E-value=4.4e-30 Score=263.09 Aligned_cols=182 Identities=17% Similarity=0.190 Sum_probs=155.0
Q ss_pred CCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc------CC
Q 004941 527 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GF 598 (722)
Q Consensus 527 ~~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~------g~ 598 (722)
.+++||||||||+.+|..++++| |+|||+.|++||+.++++|. ..+++.|||||+.||+|||+++. +.
T Consensus 12 ~~~~l~lvRHGet~~n~~~~~~G~~D~pLt~~G~~qA~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~ 87 (237)
T 3r7a_A 12 NVVTLYVTRHGKTILNTNHRAQGWADSPLVEKGVEVATNLGTGLK----DIHFMNAYSSDSGRAIETANLVLKYSEQSKL 87 (237)
T ss_dssp CEEEEEEEECCCBHHHHTTBCCSSCCCCBCHHHHHHHHHHHHHTT----TSCEEEEEECSCHHHHHHHHHHHHHTTCTTS
T ss_pred CceEEEEEeCCcccccccccccCCCCCCcCHHHHHHHHHHHHHhc----CCCCCEEEECCcHHHHHHHHHHHHhcccCCC
Confidence 45899999999999999998888 99999999999999997765 56899999999999999999992 47
Q ss_pred CcccccccccccCCcCCCCCHHHHHhhChHH----------------HHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHH
Q 004941 599 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE----------------YEARKKDKLRYRYPRGESYLDVIQRLEPVIIEL 662 (722)
Q Consensus 599 ~v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~----------------~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL 662 (722)
++..++.|+|+++|.|+|++..++.+.+|.. +..|.... ..+|+|||+.++.+|+..++.++
T Consensus 88 ~~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gEs~~~~~~R~~~~l~~l 165 (237)
T 3r7a_A 88 KLEQRKKLRELNFGIFEGEKLDNMWDAVGKAAGVTSPEELLKFSIQEVIDLIRAA--DPTKQAEDWELFSTRIKAEIDKI 165 (237)
T ss_dssp CEEECGGGCCCCCGGGTTSBHHHHHHHHHHHHTCSSGGGGGGSCHHHHHHHHHHH--CTTCCSCCHHHHHHHHHHHHHHH
T ss_pred CeeeCCCCcccCcchhcCCCHHHHHHHhhhhcCCCCHHHHHHhhhhhhhHHHhhc--CCCCCCCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998765432 22333321 25689999999999999999999
Q ss_pred Hh-----CCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCCceEEEEE
Q 004941 663 ER-----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRY 718 (722)
Q Consensus 663 ~~-----~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~g~~~~r~ 718 (722)
.. .+++|||||||++|+++++++++. ...+.+++|+++.|++...+|....+
T Consensus 166 ~~~~~~~~~~~vlvVsHg~~i~~l~~~l~~~----~~~~~~~n~sv~~l~~~~~~~~l~~~ 222 (237)
T 3r7a_A 166 SEEAAKDGGGNVLVVVHGLLITTLIEMLDSS----KTKLGVENASVTKIVYQDGIYTVESV 222 (237)
T ss_dssp HHHHHHTTCEEEEEEECHHHHHHHHHHHHGG----GCCSCCCTTCEEEEEEETTEEEECCS
T ss_pred HHHhhcCCCCeEEEEcCHHHHHHHHHHhccc----cccCCCCCceEEEEEEECCEEEEEEe
Confidence 64 367899999999999999999842 35678999999999998887766544
No 20
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio} PDB: 3e9d_A 3e9e_A
Probab=99.96 E-value=9.2e-30 Score=265.79 Aligned_cols=176 Identities=24% Similarity=0.298 Sum_probs=117.0
Q ss_pred CCccEEEecccccccccCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---c----
Q 004941 527 TPRPILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A---- 596 (722)
Q Consensus 527 ~~~~IyLvRHGes~~n~~~~~~G---D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~---- 596 (722)
+.++||||||||+.+|..+++.| |+|||+.|++||+.++++|. ...++.|||||++||+|||+++ .
T Consensus 2 ~~~~l~LvRHGet~~n~~~~~~G~~~D~pLt~~G~~QA~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~ 77 (265)
T 3e9c_A 2 LTFALTIVRHGETQYNRDKLLQGQGIDTPLSDTGHQQAAAAGRYLK----DLHFTNVFVSNLQRAIQTAEIILGNNLHSS 77 (265)
T ss_dssp EEEEEEEEECCCC-------------CCCCCHHHHHHHHHHHHHTT----TCCCSEEEECSSHHHHHHHHHHHHTCSSCT
T ss_pred cccEEEEEeCCCccccccCcccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEECCcHHHHHHHHHHHHhccccC
Confidence 45789999999999999888876 99999999999999998764 5689999999999999999999 2
Q ss_pred CCCcccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC-----------
Q 004941 597 GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ----------- 665 (722)
Q Consensus 597 g~~v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~----------- 665 (722)
+.++.+++.|+|+++|.|+|++.+++.+.++. |..++..+++|+|||+.++..|+..++.+|.+.
T Consensus 78 ~~~v~~~~~L~E~~~G~~eg~~~~ei~~~~~~----~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~e~~~~~~~ 153 (265)
T 3e9c_A 78 ATEMILDPLLRERGFGVAEGRPKEHLKNMANA----AGQSCRDYTPPGGETLEQVKTRFKMFLKSLFQRMFEEHGSALSS 153 (265)
T ss_dssp TCCEEECGGGSCCCCC---------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHCSSSCC
T ss_pred CCCeEECccceeCcCCCCCCCCHHHHHHHHHH----hccCCccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 56899999999999999999999999887653 455667789999999999999999999998653
Q ss_pred ---------------------CCcEEEEeCHHHHHHHHHHHhCC-----CCC--CCCCccc-CCcEEEEEEECC
Q 004941 666 ---------------------RAPVVVISHQAVLRALYAYFADR-----PLK--EIPHIET-PLHTIIEIQMGV 710 (722)
Q Consensus 666 ---------------------~~~VLIVSHg~vIr~Ll~~l~g~-----~~~--~~~~l~~-p~~sI~el~~~~ 710 (722)
+++|||||||++|+++++++++. +.. ....+.+ ++++|+.+....
T Consensus 154 ~~~~~~~p~~~~~~e~~~~~~~~~vlvVsHg~~i~~ll~~ll~~~~~~~p~~~~~~~~~~v~~n~sit~~~~~~ 227 (265)
T 3e9c_A 154 VPSEADQPVIAGLADDGAQNVPVHALMVSHGAFIRISVRHLVEDLQCCLPAGLKMNQVFSPCPNTGISRFIFTI 227 (265)
T ss_dssp ----CCCCCCCSSTTTTCTTCCCEEEEEECHHHHHHHHHHHHHTSCEEECTTCCHHHHTSCCCTTCEEEEEEEE
T ss_pred cccccccccccccccccccCCCCeEEEEeCHHHHHHHHHHHHcccccccccchhHHhcccCCCCCeeEEEEEEE
Confidence 56899999999999999999853 222 1112344 899998887755
No 21
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote structure initiative; 1.75A {Saccharomyces cerevisiae} PDB: 3lg2_A 3oi7_A* 3ll4_A*
Probab=99.96 E-value=1.4e-29 Score=264.21 Aligned_cols=194 Identities=19% Similarity=0.171 Sum_probs=157.7
Q ss_pred CCCccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHh---cCCCCCEEEEcChHHHHHHHHHhc----
Q 004941 526 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRL---KSERAASIWTSTLQRTILTASPIA---- 596 (722)
Q Consensus 526 ~~~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l---~~~~~~~V~sSpl~RaiQTA~~i~---- 596 (722)
+.+++||||||||+.+|..+++.| |+|||+.|++||+.++++|.... ....++.|||||++||+|||+++.
T Consensus 3 ~~~~~l~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~~~~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~ 82 (265)
T 3f3k_A 3 SLTPRCIIVRHGQTEWSKSGQYTGLTDLPLTPYGEGQMLRTGESVFRNNQFLNPDNITYIFTSPRLRARQTVDLVLKPLS 82 (265)
T ss_dssp CCCCEEEEEECCCCHHHHHTCCCSSCCCCCCHHHHHHHHHHHHHHHTC-CCSCGGGEEEEEECSSHHHHHHHHHHTTTSC
T ss_pred CCCcEEEEEECCCCccccccCccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCCCCEEEECCHHHHHHHHHHHHHhcc
Confidence 456899999999999999888888 99999999999999999987521 114688999999999999999993
Q ss_pred -----CCCcccccccccccCCcCCCCCHHHHHhhChHHHHH--HhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC----
Q 004941 597 -----GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEA--RKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ---- 665 (722)
Q Consensus 597 -----g~~v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~--~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~---- 665 (722)
+.++.+++.|+|+++|.|+|++.+++++.+|..... ...+.+...+|+|||+.++.+|+..++.++.+.
T Consensus 83 ~~~~~~~~~~~~~~L~E~~~G~~eg~~~~ei~~~~~~~~~~~~~~~~~w~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~ 162 (265)
T 3f3k_A 83 DEQRAKIRVVVDDDLREWEYGDYEGMLTREIIELRKSRGLDKERPWNIWRDGCENGETTQQIGLRLSRAIARIQNLHRKH 162 (265)
T ss_dssp HHHHHTSEEEECGGGSCCCCGGGTTCCHHHHHHHHHHTTCCSSSCCCHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEcCCceeeccCccCCCcHHHHHHHhhhccccccchhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 267889999999999999999999999988742110 000112234789999999999999999999653
Q ss_pred -----CCcEEEEeCHHHHHHHHHHHhCCCC--------------------------------CCCCCcccCCcEEEEEEE
Q 004941 666 -----RAPVVVISHQAVLRALYAYFADRPL--------------------------------KEIPHIETPLHTIIEIQM 708 (722)
Q Consensus 666 -----~~~VLIVSHg~vIr~Ll~~l~g~~~--------------------------------~~~~~l~~p~~sI~el~~ 708 (722)
+++|||||||++|+++++++++.+. .....+.++.+++..+.+
T Consensus 163 ~~~~~~~~vliVsHg~~ir~l~~~l~g~~~~~~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~~~~~~~~l~~g~~~vl~~ 242 (265)
T 3f3k_A 163 QSEGRASDIMVFAHGHALRYFAAIWFGLGVQKKCETIEEIQNVKSYDDDTVPYVKLESYRHLVDNPCFLLDAGGIGVLSY 242 (265)
T ss_dssp HHTTCCCEEEEEECHHHHHHHHHHHTTCSEEEECCSHHHHCCCCCCCCTTSCCCCCSEEEECSSCCCEECCTTCEEEEEE
T ss_pred hccCCCCcEEEEeChHHHHHHHHHHhCCCHHHhhhhhcCcccccccccccccccccccccccCCCcceeecCCceeeecc
Confidence 4789999999999999999999664 334566788888888888
Q ss_pred CCCceEEEEEe
Q 004941 709 GVTGVQEKRYK 719 (722)
Q Consensus 709 ~~~g~~~~r~~ 719 (722)
..+.+.+..+.
T Consensus 243 ~~~~~~~~~~~ 253 (265)
T 3f3k_A 243 AHHNIDEPALE 253 (265)
T ss_dssp STTCTTSEEEE
T ss_pred cCCCcCchHHH
Confidence 77666555443
No 22
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced glycolysis and apoptosis regulator, CAsp target, structural genomics medical relevance; HET: MSE; 1.75A {Homo sapiens}
Probab=99.96 E-value=2.3e-29 Score=264.19 Aligned_cols=179 Identities=25% Similarity=0.269 Sum_probs=153.4
Q ss_pred ccCCCCccEEEecccccccccCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc---
Q 004941 523 NTHLTPRPILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA--- 596 (722)
Q Consensus 523 n~~~~~~~IyLvRHGes~~n~~~~~~G---D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~--- 596 (722)
++++..++||||||||+.+|..+++.| |+|||+.|++||+.++++|. ...++.|||||+.||+|||+++.
T Consensus 3 ~~~~~~~~i~LvRHGet~~n~~~~~~G~~~D~~Lt~~G~~QA~~l~~~l~----~~~~~~v~sSpl~Ra~qTA~~i~~~~ 78 (275)
T 3dcy_A 3 YFQSARFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLN----NVKFTHAFSSDLMRTKQTMHGILERS 78 (275)
T ss_dssp EECCEEEEEEEEECCCBHHHHHTBCCSSSSCCCBCHHHHHHHHHHHHHTT----TCCCSEEEECSSHHHHHHHHHHHTTC
T ss_pred cccccCcEEEEEeCCCcccccCCccCCCCCCCCcCHHHHHHHHHHHHHhc----cCCCCEEEECChHHHHHHHHHHHHhc
Confidence 345677999999999999998888876 99999999999999997764 56899999999999999999992
Q ss_pred ----CCCcccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC-------
Q 004941 597 ----GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ------- 665 (722)
Q Consensus 597 ----g~~v~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~------- 665 (722)
+.++.+++.|+|+++|.|+|++.+++.+.+| .|..++..+++|+|||+.++..|+..++.+|.+.
T Consensus 79 ~~~~~~~v~~~~~L~E~~~G~~eg~~~~ei~~~~~----~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~ 154 (275)
T 3dcy_A 79 KFCKDMTVKYDSRLRERKYGVVEGKALSELRAMAK----AAREECPVFTPPGGETLDQVKMRGIDFFEFLCQLILKEADQ 154 (275)
T ss_dssp SSCTTCCEEECGGGSCCCBGGGTTSBHHHHHHHHH----HTTCCTTTCCCTTBCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCeeECcccccCccCCcCCCCHHHHHHHHH----HHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5688999999999999999999999988765 4666778899999999999999999999998651
Q ss_pred ----------------------------------------CCcEEEEeCHHHHHHHHHHHh---------CCCCCCCCCc
Q 004941 666 ----------------------------------------RAPVVVISHQAVLRALYAYFA---------DRPLKEIPHI 696 (722)
Q Consensus 666 ----------------------------------------~~~VLIVSHg~vIr~Ll~~l~---------g~~~~~~~~l 696 (722)
+++|||||||++|++++.+|+ +++.+++..+
T Consensus 155 ~~~~~~~~p~~~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~VlvVsHg~~ir~l~~~l~~~~~~~lp~~l~~~~i~~~ 234 (275)
T 3dcy_A 155 KEQFSQGSPSNCLETSLAEIFPLGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYFLTDLKCSLPATLSRSELMSV 234 (275)
T ss_dssp C---------CHHHHHHHTTSCC-------------CCCCSCEEEEEECHHHHHHHHHHHHHTTCCBCCTTCCHHHHHSC
T ss_pred ccccccccchHHHHHHHHhhccccccccchhcccccccCCCceEEEEechHHHHHHHHHHHhhcCCCCCCCCCHHHhcCc
Confidence 468999999999999999999 6666666666
Q ss_pred ccCCcEE-EEEEEC
Q 004941 697 ETPLHTI-IEIQMG 709 (722)
Q Consensus 697 ~~p~~sI-~el~~~ 709 (722)
.++.+-. +.++..
T Consensus 235 ~~~tgi~~~~~~~~ 248 (275)
T 3dcy_A 235 TPNTGMSLFIINFE 248 (275)
T ss_dssp CCTTCEEEEEEEEC
T ss_pred CCCCCCeeEEEEEc
Confidence 6666555 555553
No 23
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=99.95 E-value=1.2e-28 Score=257.79 Aligned_cols=187 Identities=20% Similarity=0.220 Sum_probs=155.7
Q ss_pred CCCCccEEEeccccccccc------------CC------------------CcCC---CCCCCHHHHHHHHHHHHHHHHH
Q 004941 525 HLTPRPILLTRHGESRDNV------------RG------------------RIGG---DTILSDAGEIYAKKLANFVEKR 571 (722)
Q Consensus 525 ~~~~~~IyLvRHGes~~n~------------~~------------------~~~G---D~pLTe~G~~QA~~L~~~L~~~ 571 (722)
.+++++||||||||+.+|. .+ +++| |.|||+.|++||++++++|...
T Consensus 6 ~~~~~~l~lvRHGet~~n~~~~~w~~~~~n~~~~y~~~d~n~p~~~~~r~~~~~G~~~D~pLt~~G~~QA~~l~~~L~~~ 85 (273)
T 3d4i_A 6 TISRRGILVIRHGERVDQVFGKSWLQQCTTADGKYYRPDLNFPRSLPRRSNGIKDFENDPPLSSCGIFQARLAGEALLDS 85 (273)
T ss_dssp TSCCCEEEEEECCCBHHHHHCTTHHHHTBCTTSCBCCSSTTSCSCCCCCTTGGGGGGGSCCBCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCccccccccchhHHHhhhccccccccccccCCcccccccCCCcCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 4566899999999999852 22 2333 9999999999999999999765
Q ss_pred hcCCCCCEEEEcChHHHHHHHHHh---cC----CCccccccccc-ccCCcCCC----CCHHHHHhhChH---HHHHHhcC
Q 004941 572 LKSERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDE-INAGVCDG----MTYEEIKKNMPE---EYEARKKD 636 (722)
Q Consensus 572 l~~~~~~~V~sSpl~RaiQTA~~i---~g----~~v~~~~~L~E-i~~G~~eg----~t~~ei~~~~p~---~~~~~~~d 636 (722)
...++.|||||+.||+|||+++ .+ .++..++.|+| +++|.|+| ++.+++.+.+|. .+..|..+
T Consensus 86 --~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~~g~~eg~~~~~~~~el~~~~~~~~~~~~~~~~~ 163 (273)
T 3d4i_A 86 --GVRVTAVFASPALRCVQTAKHILEELKLEKKLKIRVEPGIFEWMKWEASKATLTFLTLEELKEANFNVDLDYRPALPR 163 (273)
T ss_dssp --TCCEEEEEECSSHHHHHHHHHHHHHHTCTTTSCEEECGGGSCCGGGSCTTGGGGSCCHHHHHHTTCCBCTTCCCSSCG
T ss_pred --CCCCCEEEECchHHHHHHHHHHHHHcCcCCCccEEEChhhhhhhhccccccCCCCCCHHHHHHhCCCCCcccccccCC
Confidence 5689999999999999999998 34 67889999999 99999998 689999887763 33334322
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHhC----CCcEEEEeCHHHHHHHHHHHhCCCCCCCCCc-----ccCCcEEEEEE
Q 004941 637 KLRYRYPRGESYLDVIQRLEPVIIELERQ----RAPVVVISHQAVLRALYAYFADRPLKEIPHI-----ETPLHTIIEIQ 707 (722)
Q Consensus 637 ~~~~r~P~gES~~dv~~Rl~~~l~eL~~~----~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l-----~~p~~sI~el~ 707 (722)
..+|+|||+.++.+|+..++.++... +++|||||||++|+++++++++.+...++.+ .+++|++++|+
T Consensus 164 ---~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~~~n~si~~l~ 240 (273)
T 3d4i_A 164 ---CSLMPAESYDQYVERCAVSMGQIINTCPQDMGITLIVSHSSALDSCTRPLLGLPPRECGDFAQLVRKIPSLGMCFCE 240 (273)
T ss_dssp ---GGCCTTCCHHHHHHHHHHHHHHHHTTSTTCCSEEEEEECTTHHHHTTHHHHTCCCCCHHHHHHHHHTCCTTCEEEEE
T ss_pred ---CcCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEechHHHHHHHHHHcCCCcchHHHHhhhccccCcceEEEEE
Confidence 35789999999999999999998653 5789999999999999999999988877666 79999999999
Q ss_pred ECC--CceEEE
Q 004941 708 MGV--TGVQEK 716 (722)
Q Consensus 708 ~~~--~g~~~~ 716 (722)
... .+|...
T Consensus 241 ~~~~~~~w~l~ 251 (273)
T 3d4i_A 241 ENREDGKWDLV 251 (273)
T ss_dssp ECTTTCCEEEE
T ss_pred EcCCCCceeEC
Confidence 976 456553
No 24
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=99.95 E-value=6.7e-28 Score=250.96 Aligned_cols=180 Identities=19% Similarity=0.117 Sum_probs=147.2
Q ss_pred CCccEEEecccccccc----------------------------cCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhcCC
Q 004941 527 TPRPILLTRHGESRDN----------------------------VRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSE 575 (722)
Q Consensus 527 ~~~~IyLvRHGes~~n----------------------------~~~~~~G---D~pLTe~G~~QA~~L~~~L~~~l~~~ 575 (722)
++++||||||||+.+| ..+++.| |.|||+.|++||++++++|... ..
T Consensus 3 ~~~~l~lvRHGet~~n~~~~w~~~~~~~~~y~~~d~n~p~~~pn~~~~~~g~~~D~pLt~~G~~QA~~l~~~L~~~--~~ 80 (263)
T 3c7t_A 3 SRRWVFALRHGERVDLTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPLTRLGWFQAQLVGEGMRMA--GV 80 (263)
T ss_dssp -CEEEEEEECCCBHHHHSSSHHHHHEETTEECCCSTTSCSCCCCCTTHHHHHHHSCCBCHHHHHHHHHHHHHHHHT--TC
T ss_pred CceEEEEEeCCccccccchhhHhhhhccCccccccccCCccccccccCcccCCCCCCcCHHHHHHHHHHHHHHHHC--CC
Confidence 4689999999999983 3444444 9999999999999999998754 56
Q ss_pred CCCEEEEcChHHHHHHHHHh---cC----CCccccccccc-ccCCcC---CCCCHHHHHhhChHHHHHHhcCcCCCCCCC
Q 004941 576 RAASIWTSTLQRTILTASPI---AG----FPKIQWRALDE-INAGVC---DGMTYEEIKKNMPEEYEARKKDKLRYRYPR 644 (722)
Q Consensus 576 ~~~~V~sSpl~RaiQTA~~i---~g----~~v~~~~~L~E-i~~G~~---eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~ 644 (722)
+++.|||||+.||+|||+++ .+ .++..++.|+| +++|.| +|++.+++.+.+|.. ..+....... .|+
T Consensus 81 ~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~~g~~~G~eg~~~~e~~~~~~~~-~~~~~~~~~~-~p~ 158 (263)
T 3c7t_A 81 SIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFEFKNWHMPKGIDFMTPIELCKAGLNV-DMTYKPYVEM-DAS 158 (263)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTCCTTCCEEECGGGCCCCCTTSCCCCCCCCHHHHHHTTCCB-CTTCCCSCCC-CSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCcCCCCceEeccccccccccccccccccCCHHHHHHhcCCc-cccccccccC-CCC
Confidence 89999999999999999998 34 77889999999 997544 889999998877641 1111222222 389
Q ss_pred CCCHHHHHHHHHHHHHHHHh----CCCcEEEEeCHHHHHHHHHHHhCCCCCCCC-------Cc--ccCCcEEEEEEECC
Q 004941 645 GESYLDVIQRLEPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIP-------HI--ETPLHTIIEIQMGV 710 (722)
Q Consensus 645 gES~~dv~~Rl~~~l~eL~~----~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~-------~l--~~p~~sI~el~~~~ 710 (722)
|||+.++.+|+..++.++.. .+++|||||||++|+++++++++.+....+ .+ .+++|+++.|+.+.
T Consensus 159 gEs~~~~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~n~si~~l~~~~ 237 (263)
T 3c7t_A 159 AETMDEFFKRGEVAMQAAVNDTEKDGGNVIFIGHAITLDQMVGALHRLRDDMEDVQPYEIGRNLLKVPYCALGAMRGKP 237 (263)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTTTCCEEEEECHHHHHHHHHHHHTTCSSCCSCCCCCTTSSSSCCCTTCEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCHHHHHHHHHHHhCCCchhhcccHHHHHHhcccCCcceehhecccC
Confidence 99999999999999999864 357899999999999999999999887654 44 89999999999975
No 25
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=99.94 E-value=3.4e-27 Score=245.80 Aligned_cols=183 Identities=17% Similarity=0.110 Sum_probs=152.6
Q ss_pred ccEEEecccccccccCC------------Cc---------------------CCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 004941 529 RPILLTRHGESRDNVRG------------RI---------------------GGDTILSDAGEIYAKKLANFVEKRLKSE 575 (722)
Q Consensus 529 ~~IyLvRHGes~~n~~~------------~~---------------------~GD~pLTe~G~~QA~~L~~~L~~~l~~~ 575 (722)
++|||+||||+.+|..+ .+ ..|+|||+.|++||+.++++|.+. ..
T Consensus 1 r~i~l~RHge~~~~~~~~~w~~~~~~~~~~y~~~d~~~p~~~~~r~~~~~~~d~D~pLT~~G~~QA~~l~~~L~~~--~~ 78 (264)
T 3mbk_A 1 RCLFVCRHGERMDVVFGKYWLSQCFDAKGRYIRTNLNMPHSLPQRSGGFRDYEKDAPITVFGCMQARLVGEALLES--NT 78 (264)
T ss_dssp CEEEEEECCCBHHHHHCTTGGGGTBCTTSCBCCCSTTSCSCCCCCTTCGGGGTTSCCBCHHHHHHHHHHHHHHHHT--TC
T ss_pred CeEEEEeCCcccccccchhHHHhhcCCCCceecCCCCCCCcccCCCCchhhcCCCCCCChHHHHHHHHHHHHHHHc--CC
Confidence 57999999998654311 11 139999999999999999999765 56
Q ss_pred CCCEEEEcChHHHHHHHHHh---cC----CCcccccccccccCCcCCC-------CCHHHHHhhChHHHHHHhcCcCCCC
Q 004941 576 RAASIWTSTLQRTILTASPI---AG----FPKIQWRALDEINAGVCDG-------MTYEEIKKNMPEEYEARKKDKLRYR 641 (722)
Q Consensus 576 ~~~~V~sSpl~RaiQTA~~i---~g----~~v~~~~~L~Ei~~G~~eg-------~t~~ei~~~~p~~~~~~~~d~~~~r 641 (722)
.++.|||||+.||+|||+.+ .+ .++..++.|+| +|.|+| ++.+++.+.+|.....|..+....+
T Consensus 79 ~~d~v~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E--~g~~eg~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 156 (264)
T 3mbk_A 79 VIDHVYCSPSLRCVQTAHNILKGLQQDNHLKIRVEPGLFE--WTKWVAGSTLPAWIPPSELAAANLSVDTTYRPHIPVSK 156 (264)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTCTTTCCBEECGGGSC--CGGGSSSSSCCCCCCHHHHHHTTCCBCTTCCCSSCGGG
T ss_pred CcCEEEECcHHHHHHHHHHHHHHhcccCCCCeeEcCChHH--HhhhccccCCCCCCCHHHHHHhCCCcchhhccccCccc
Confidence 89999999999999999998 33 47899999999 688998 5899999988877667777767778
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHh----CCCcEEEEeCHHHHHHHHHHHhCCCCCCCCCcc-----cCCcEEEEEEEC--C
Q 004941 642 YPRGESYLDVIQRLEPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIE-----TPLHTIIEIQMG--V 710 (722)
Q Consensus 642 ~P~gES~~dv~~Rl~~~l~eL~~----~~~~VLIVSHg~vIr~Ll~~l~g~~~~~~~~l~-----~p~~sI~el~~~--~ 710 (722)
+|+|||+.++.+|+..++.++.+ .+++|||||||++|+++++++++.+.+.+..+. +|++++..++.. .
T Consensus 157 ~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~~l~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 236 (264)
T 3mbk_A 157 LAISESYDTYINRSFQVTKEIISECKSKGNNILIVAHASSLEACTCQLQGLSPQNSKDFVQMVRKIPYLGFCSCEELGET 236 (264)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHTTSCSEEEEEECTTHHHHTTTGGGTCCCCCHHHHHHHHTTCCTTCEEEEEECSSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHHcCCCHHHHHHHHHhccCCCchHHHHhhhhccC
Confidence 89999999999999999999965 357999999999999999999999998877654 788888887753 4
Q ss_pred CceEE
Q 004941 711 TGVQE 715 (722)
Q Consensus 711 ~g~~~ 715 (722)
.+|..
T Consensus 237 g~W~l 241 (264)
T 3mbk_A 237 GIWQL 241 (264)
T ss_dssp CCEEE
T ss_pred CcEEe
Confidence 45554
No 26
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=99.93 E-value=1.7e-25 Score=223.88 Aligned_cols=171 Identities=21% Similarity=0.232 Sum_probs=136.4
Q ss_pred CCCCccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---c-CCCc
Q 004941 525 HLTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFPK 600 (722)
Q Consensus 525 ~~~~~~IyLvRHGes~~n~~~~~~GD~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~-g~~v 600 (722)
.+.+++||||||||+ |..+++..|.|||+.|++||+.++++|... ..+++.|||||+.||+|||+++ . +.++
T Consensus 7 ~~~~~~i~lvRHGe~--n~~g~~~~D~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~ 82 (202)
T 3mxo_A 7 AKATRHIFLIRHSQY--HVDGSLEKDRTLTPLGREQAELTGLRLASL--GLKFNKIVHSSMTRAIETTDIISRHLPGVCK 82 (202)
T ss_dssp CSSCEEEEEEECCCB--CTTCSSGGGCCBCHHHHHHHHHHHHHHHTT--CCCCSEEEEESSHHHHHHHHHHHHTSTTCCE
T ss_pred CCCceEEEEEeCccc--cCCCCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhCCCCCe
Confidence 345689999999995 666777669999999999999999988743 3589999999999999999999 3 6788
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC-------CCcEEEEe
Q 004941 601 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-------RAPVVVIS 673 (722)
Q Consensus 601 ~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~-------~~~VLIVS 673 (722)
..++.|+| |+++++ .+| +..|. +++|++.++.+|+..++.++... +++|||||
T Consensus 83 ~~~~~L~E-------g~~~~~---~~~--~~~w~--------~~~es~~~~~~R~~~~~~~~~~~~~~~~~~~~~vlvVs 142 (202)
T 3mxo_A 83 VSTDLLRE-------GAPIEP---DPP--VSHWK--------PEAVQYYEDGARIEAAFRNYIHRADARQEEDSYEIFIC 142 (202)
T ss_dssp EEEGGGCC-------CCC---------------------------CTHHHHHHHHHHHHHHHTTCCCTTCCSCEEEEEEE
T ss_pred eeCccccc-------CCccCC---CCc--HHhhc--------cCCcccccHHHHHHHHHHHHHHhhhhccCCCceEEEEe
Confidence 89999998 444432 111 33332 56899999999999999999753 45799999
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECC-CceEEEEEe
Q 004941 674 HQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV-TGVQEKRYK 719 (722)
Q Consensus 674 Hg~vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~-~g~~~~r~~ 719 (722)
||++|+++++++++.+...++.+.+++|+++.|++.. ..+....++
T Consensus 143 Hg~~ir~ll~~llg~~~~~~~~~~~~n~si~~l~~~~~g~~~l~~~N 189 (202)
T 3mxo_A 143 HANVIRYIVCRALQFPPEGWLRLSLNNGSITHLVIRPNGRVALRTLG 189 (202)
T ss_dssp CHHHHHHHHHHHTTCCGGGGGGBCCCTTCEEEEEECTTSCEEEEEEE
T ss_pred CHHHHHHHHHHHhCCCHHHHhhcccCCceEEEEEEcCCCcEEEEEeC
Confidence 9999999999999999999899999999999999985 456766665
No 27
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural genomics, isomerase, structural GE consortium, SGC; 2.40A {Plasmodium falciparum}
Probab=99.93 E-value=3.5e-26 Score=231.43 Aligned_cols=172 Identities=19% Similarity=0.160 Sum_probs=117.2
Q ss_pred CCCccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---c-CCCcc
Q 004941 526 LTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFPKI 601 (722)
Q Consensus 526 ~~~~~IyLvRHGes~~n~~~~~~GD~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~-g~~v~ 601 (722)
.++++||||||||+.+|..+ -..|.|||+.|++||++++++|+..+...+++.|||||+.||+|||+.+ . +.++.
T Consensus 19 ~~~~~i~LvRHGet~~n~~~-g~~d~pLt~~G~~QA~~l~~~L~~~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 97 (214)
T 3eoz_A 19 NTTKHIILVRHGQYERRYKD-DENSKRLTKEGCKQADITGKKLKDILNNKKVSVIYHSDMIRAKETANIISKYFPDANLI 97 (214)
T ss_dssp CCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSHHHHHHHHHHHTTCTTSEEE
T ss_pred CCccEEEEEeCCccccCccC-CcCCCCcCHHHHHHHHHHHHHHHHhcccCCCCEEEECCcHHHHHHHHHHHHHCCCCCee
Confidence 34589999999999999764 1229999999999999999999877656689999999999999999999 2 56788
Q ss_pred cccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhC-----CCcEEEEeCHH
Q 004941 602 QWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-----RAPVVVISHQA 676 (722)
Q Consensus 602 ~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~-----~~~VLIVSHg~ 676 (722)
.++.|+| |+++.+. .+ + ....|+|||+.++.+|+..++.++... +++|||||||+
T Consensus 98 ~~~~L~E-------G~~~~~~--~~----------~-~~~~~~gEs~~~~~~R~~~~l~~l~~~~~~~~~~~vlvVsHg~ 157 (214)
T 3eoz_A 98 NDPNLNE-------GTPYLPD--PL----------P-RHSKFDAQKIKEDNKRINKAYETYFYKPSGDEDEYQLVICHGN 157 (214)
T ss_dssp ECGGGCC-------CC-----------------------------------CCHHHHHHHHCSCCCSSCCEEEEEEECHH
T ss_pred eCccccC-------CCCCCCC--CC----------c-ccCCCCCccHHHHHHHHHHHHHHHHHhcccCCCcEEEEEeCcH
Confidence 8999998 4444311 00 1 112368999999999999999999654 24799999999
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCcEEEEEEECCC-ceEEEEE
Q 004941 677 VLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT-GVQEKRY 718 (722)
Q Consensus 677 vIr~Ll~~l~g~~~~~~~~l~~p~~sI~el~~~~~-g~~~~r~ 718 (722)
+|+++++++++.+...++.+.+++|+++.|++... .+....+
T Consensus 158 ~i~~ll~~llg~~~~~~~~~~~~n~si~~l~~~~~g~~~l~~~ 200 (214)
T 3eoz_A 158 VIRYFLCRALQIPLFAWLRFSSYNCGITWLVLDDEGSVVLREF 200 (214)
T ss_dssp HHHHHHHHHHTCCHHHHHHHTTCCCSEEEEEEETTSCEEEECC
T ss_pred HHHHHHHHHhCCCHHHHhhcCCCCceEEEEEECCCCCEEEEEe
Confidence 99999999999998877788999999999999864 4665544
No 28
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=99.88 E-value=4.7e-22 Score=192.37 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=114.1
Q ss_pred ccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cCCCcccccc
Q 004941 529 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWRA 605 (722)
Q Consensus 529 ~~IyLvRHGes~~n~~~~~~GD~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g~~v~~~~~ 605 (722)
|+||||||||+.+|..+. .|.|||+.|++||++++++|... ...++.|||||+.||+|||+++ .+.++..
T Consensus 1 m~l~LvRHg~t~~n~~g~--~d~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~--- 73 (161)
T 1ujc_A 1 MQVFIMRHGDAALDAASD--SVRPLTTNGCDESRLMANWLKGQ--KVEIERVLVSPFLRAEQTLEEVGDCLNLPSSA--- 73 (161)
T ss_dssp CEEEEEECCCBCSCSSSG--GGCCBCHHHHHHHHHHHHHHHHT--TCCCCEEEECSSHHHHHHHHHHHHHSCCCSCC---
T ss_pred CEEEEEeCCCcCCCCCCC--CcCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEeCchHHHHHHHHHHHHhcCCCceE---
Confidence 479999999999987432 29999999999999999999764 4589999999999999999998 3333321
Q ss_pred cccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHh-CCCcEEEEeCHHHHHHHHHH
Q 004941 606 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER-QRAPVVVISHQAVLRALYAY 684 (722)
Q Consensus 606 L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~-~~~~VLIVSHg~vIr~Ll~~ 684 (722)
. .|++ -+|+|| + .|+..++.++.. ..++||||||+++|++++++
T Consensus 74 -~-----~~~~------------------------l~p~ge-~----~r~~~~l~~~~~~~~~~vlvV~H~~~i~~l~~~ 118 (161)
T 1ujc_A 74 -E-----VLPE------------------------LTPCGD-V----GLVSAYLQALTNEGVASVLVISHLPLVGYLVAE 118 (161)
T ss_dssp -E-----ECGG------------------------GSTTCC-H----HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHH
T ss_pred -E-----ecCC------------------------cCCCCC-H----HHHHHHHHHHhccCCCeEEEEeCHHHHHHHHHH
Confidence 0 1111 147788 4 566667776654 56799999999999999999
Q ss_pred HhCCCCCCCCCcccCCcEEEEEEEC-CCceEEEEEe
Q 004941 685 FADRPLKEIPHIETPLHTIIEIQMG-VTGVQEKRYK 719 (722)
Q Consensus 685 l~g~~~~~~~~l~~p~~sI~el~~~-~~g~~~~r~~ 719 (722)
+++.+.. +.+++++++.|++. ..++....++
T Consensus 119 l~~~~~~----~~~~~~~i~~l~~~~~~~~~l~~~~ 150 (161)
T 1ujc_A 119 LCPGETP----PMFTTSAIASVTLDESGNGTFNWQM 150 (161)
T ss_dssp HSTTCCC----CCCCTTCEEEEEECTTSCEEEEEEE
T ss_pred HhCCCCc----cccCCCeEEEEEEcCCCCeEEEEee
Confidence 9998765 67899999999998 6667766554
No 29
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=2.1e-21 Score=190.03 Aligned_cols=137 Identities=20% Similarity=0.223 Sum_probs=101.9
Q ss_pred CccEEEecccccccccCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cCCC--c
Q 004941 528 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFP--K 600 (722)
Q Consensus 528 ~~~IyLvRHGes~~n~~~~~~G--D~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g~~--v 600 (722)
+++||||||||+.+|..+ .| |.|||+.|++||++++++|... ...++.|||||+.||+|||+++ .+.+ +
T Consensus 8 M~~l~LvRHg~t~~n~~~--~g~~d~pLt~~G~~qa~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 83 (173)
T 2rfl_A 8 PTRVYLLRHAKAAWAAPG--ERDFDRGLNEAGFAEAEIIADLAADR--RYRPDLILSSTAARCRQTTQAWQRAFNEGIDI 83 (173)
T ss_dssp CCEEEEEECCCBCC-------CGGGCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEECSSHHHHHHHHHHHHHHC--CEE
T ss_pred ccEEEEEeCCCcCCCCCC--CCcccCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCHHHHHHHHHHHHHhcCCCCCe
Confidence 478999999999999754 34 9999999999999999999765 5578999999999999999998 3444 3
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEeCHHHHHH
Q 004941 601 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRA 680 (722)
Q Consensus 601 ~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~~~~VLIVSHg~vIr~ 680 (722)
..++.|.|.+ .|++.++ + ++...+++||||||+++|++
T Consensus 84 ~~~~~l~e~~----------------------------------~e~~~~~-------l-~~~~~~~~vlvVsH~~~i~~ 121 (173)
T 2rfl_A 84 VYIDEMYNAR----------------------------------SETYLSL-------I-AAQTEVQSVMLVGHNPTMEA 121 (173)
T ss_dssp EECGGGSSCS----------------------------------SSCSHHH-------H-HTCTTCSEEEEEECTTHHHH
T ss_pred EECHhHhcCC----------------------------------HHHHHHH-------H-hCCCCCCeEEEEeCCHHHHH
Confidence 4455555432 1455443 3 34445778999999999999
Q ss_pred HHHHHhCCCCC-CCCCcccCCcEEEEEEECC
Q 004941 681 LYAYFADRPLK-EIPHIETPLHTIIEIQMGV 710 (722)
Q Consensus 681 Ll~~l~g~~~~-~~~~l~~p~~sI~el~~~~ 710 (722)
+++++++.+.. ....+.++++++++|++..
T Consensus 122 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (173)
T 2rfl_A 122 TLEAMIGEDLLHAALPSGFPTSGLAVLDQDD 152 (173)
T ss_dssp HHHHHHCHHHHHHHCTTCCCTTCEEEEEC--
T ss_pred HHHHHhCCCcchhhhhcCCCCCeEEEEEecC
Confidence 99999987643 1234678999999998754
No 30
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.76 E-value=4.8e-18 Score=185.06 Aligned_cols=158 Identities=15% Similarity=0.109 Sum_probs=120.2
Q ss_pred CCCCccEEEecccccccccCCCcC-CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHh---cCCCc
Q 004941 525 HLTPRPILLTRHGESRDNVRGRIG-GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPK 600 (722)
Q Consensus 525 ~~~~~~IyLvRHGes~~n~~~~~~-GD~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i---~g~~v 600 (722)
...+++|||||||++.++...... .|.|||+.|++||+.++++|+ ...++.|||||+.||+|||+++ .+.++
T Consensus 179 ~~~~~~l~lvRHg~~~~~~~~~~~~~d~pLt~~G~~qa~~~~~~l~----~~~~d~i~sSp~~Ra~~Ta~~~~~~~~~~~ 254 (364)
T 3fjy_A 179 AATAQNLLIVRHAKAESRKSWKGTDANRPITPKGAAMAFALNRELA----CFNPTRLATSPWLRCQETLQVLSWQTERPM 254 (364)
T ss_dssp GGGCEEEEEEECCCBCCTTTCCSCSTTCCBCHHHHHHHHHHHHHHG----GGCEEEEEECSSHHHHHHHHHHHHHHTCCE
T ss_pred CCcceeEEEEeccccccccccCCCcCcCCCCHHHHHHHHHHHHHhc----cCCCCEEEEcChHHHHHHHHHHHHhcCCCe
Confidence 445689999999999876532111 288999999999999998886 3478999999999999999998 57778
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEeCHHHHHH
Q 004941 601 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRA 680 (722)
Q Consensus 601 ~~~~~L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~~~~VLIVSHg~vIr~ 680 (722)
...+.|+|..+ +++..++..|+..++.++....++||||+|+++|++
T Consensus 255 ~~~~~l~e~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~vlvV~H~~~i~~ 301 (364)
T 3fjy_A 255 EHINTLTEDAF---------------------------------AEHPAVSWLAFREQITQTLNSRETTAICMHRPVIGG 301 (364)
T ss_dssp EECGGGSHHHH---------------------------------HHCHHHHHHHHHHHHHHHHHHTCEEEEEECHHHHHH
T ss_pred EECcccCcccc---------------------------------ccCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHH
Confidence 78888887533 134566777888888887777889999999999999
Q ss_pred HHHHHhCCCCCC-C--------CCcccCCcEEEEEEECCCceEEEEEe
Q 004941 681 LYAYFADRPLKE-I--------PHIETPLHTIIEIQMGVTGVQEKRYK 719 (722)
Q Consensus 681 Ll~~l~g~~~~~-~--------~~l~~p~~sI~el~~~~~g~~~~r~~ 719 (722)
|+.++.+.+... + +.+......++++..+..|+....++
T Consensus 302 l~~~l~g~~~~~~~~~~~~~~~~~~pt~~~~v~~~~~~~~~~~v~~~~ 349 (364)
T 3fjy_A 302 MYDHLRGLCARKQLAKQLIAKSPYMPTGTAMSLFIIDTPQGPSIIDIQ 349 (364)
T ss_dssp HHHHHGGGSSSHHHHHHCCSSTTTSCTTCEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHhCCCchHHHHHhccccCcccCCCcEEEEEEcCCCCCCeEEEEE
Confidence 999999977321 1 12344445555555566777665554
No 31
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=99.74 E-value=1.4e-18 Score=157.67 Aligned_cols=89 Identities=18% Similarity=0.361 Sum_probs=79.4
Q ss_pred CceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccCC----CceEEEEecCCCCCceeEEEEEecCCCCCc
Q 004941 28 GGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESA----SMWELSFVVPPNHETLDFKFLLKPKYGNGP 103 (722)
Q Consensus 28 ~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~----~~W~~~l~~~~~~~~leyKf~~~~~~~~~~ 103 (722)
+++..|+|+|.+| +..++.|+|+||+++||+||+++|++|+..++ +.|.+++++|... .|||||++++ .+..
T Consensus 4 ~~~v~V~F~v~~~-t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~-~~eYKy~v~~--~~g~ 79 (108)
T 1ac0_A 4 PTAVAVTFDLTAT-TTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGE-SFEYKFIRIE--SDDS 79 (108)
T ss_dssp CCCCCEEEEEECC-CCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSSS-CEECCCEECC--SSSC
T ss_pred CCeEEEEEEEeeE-CCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCCC-eEEEEEEEEc--CCCC
Confidence 5678899999998 88899999999999999999999999999965 9999999998765 7999999975 3445
Q ss_pred eeeccCCCcccccCCCC
Q 004941 104 CIVEEGPNRLLTGGALQ 120 (722)
Q Consensus 104 ~~wE~g~NR~l~~~~~~ 120 (722)
+.||+|+||.+.+|...
T Consensus 80 ~~WE~g~nR~~~~p~~~ 96 (108)
T 1ac0_A 80 VEWESDPNREYTVPQAC 96 (108)
T ss_dssp CCCCCSSCCEECCCSSS
T ss_pred EEeccCCCEEEECCCCC
Confidence 67999999999988764
No 32
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=159.09 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=79.1
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccCccc----CCCceEEEEecCCCCCceeEEEEE---ecCC
Q 004941 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE----SASMWELSFVVPPNHETLDFKFLL---KPKY 99 (722)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~----~~~~W~~~l~~~~~~~~leyKf~~---~~~~ 99 (722)
-+.+.-|+|+|++|+ ..++.++|+||+++||+|||++|++|... .++.|.+++++|... +|||||++ ++.+
T Consensus 5 s~~~v~V~F~v~~~~-~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~-~~eYKyvi~~~~~~~ 82 (131)
T 2z0b_A 5 SSGPSQVAFEIRGTL-LPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGV-SVQYRYFKGYFLEPK 82 (131)
T ss_dssp -CCCEEEEEEEECCC-CTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTC-CEEEEEEEEEEECCC
T ss_pred CCCeEEEEEEEeeec-CCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCC-cEEEEEEEEeecCcc
Confidence 456789999999988 88999999999999999999999999999 899999999998775 89999999 7653
Q ss_pred CC------CceeeccCC-CcccccCC
Q 004941 100 GN------GPCIVEEGP-NRLLTGGA 118 (722)
Q Consensus 100 ~~------~~~~wE~g~-NR~l~~~~ 118 (722)
+. ....||+|+ ||+++.+.
T Consensus 83 ~~~g~~~v~~~~WE~g~~NR~l~~~~ 108 (131)
T 2z0b_A 83 TIGGPCQVIVHKWETHLQPRSITPLE 108 (131)
T ss_dssp C----CEEEEEEECCSSCCEEECCCS
T ss_pred ccCCccccceeeECCCCCCcEEecCC
Confidence 23 455999999 99999874
No 33
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=99.73 E-value=2.3e-17 Score=161.79 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=102.7
Q ss_pred ccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhcCCCccccccccc
Q 004941 529 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRALDE 608 (722)
Q Consensus 529 ~~IyLvRHGes~~n~~~~~~GD~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~g~~v~~~~~L~E 608 (722)
|+|||||||++.+|....-..|.|||++|++||++++++|.+. ...++.|||||+.||+|||+.+...... ..+.+
T Consensus 1 M~l~LvRHg~a~~~~~~~~d~d~pLt~~G~~qA~~~~~~L~~~--~~~~~~i~sSp~~Ra~qTa~~l~~~~~~--~~~~~ 76 (172)
T 3f2i_A 1 MELYLIRHGIAEAQKTGIKDEERELTQEGKQKTEKVAYRLVKL--GRQFDLIVTSPLIRARQTAEILLASGLS--CQLEE 76 (172)
T ss_dssp CEEEEEECCCBCCC---CCGGGCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHTTSC--SCEEE
T ss_pred CEEEEEcCCCcCccccCCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHhcCCC--CCeEE
Confidence 5799999999998865432239999999999999999999865 5689999999999999999999321110 01111
Q ss_pred ccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEeCHHHHHHHHHHHhCC
Q 004941 609 INAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADR 688 (722)
Q Consensus 609 i~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~~~~VLIVSHg~vIr~Ll~~l~g~ 688 (722)
.+. ...+++..++..++..+. .....++++||+|..+|..|++++.+.
T Consensus 77 ~~~------------------------------L~~~~~~~~~~~~l~~~~--~~~~~~~vllVgH~P~l~~l~~~L~~~ 124 (172)
T 3f2i_A 77 SNH------------------------------LAPNGNIFNWLDYWLKPK--NFPENAQIAIVGHEPCLSNWTEILLWG 124 (172)
T ss_dssp CGG------------------------------GSTTCCHHHHHHHTHHHH--CCCTTCEEEEEECTTHHHHHHHHHHHS
T ss_pred Ccc------------------------------cCCccCHHHHHHHHHHhc--cCCCCCEEEEEeCChHHHHHHHHHhcC
Confidence 100 001245555555544332 114567999999999999999999986
Q ss_pred CCCCCCCcccCCcEEEEEEECC
Q 004941 689 PLKEIPHIETPLHTIIEIQMGV 710 (722)
Q Consensus 689 ~~~~~~~l~~p~~sI~el~~~~ 710 (722)
+.. ..+.++.++++.|+++.
T Consensus 125 ~~~--~~~~~~t~~i~~l~~~~ 144 (172)
T 3f2i_A 125 EAK--DSLVLKKAGMIGLKLPE 144 (172)
T ss_dssp SCC--CCBCCCTTCEEEEECCS
T ss_pred Ccc--cccccCCceEEEEEeCC
Confidence 553 34689999999999854
No 34
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=99.60 E-value=1e-15 Score=179.79 Aligned_cols=96 Identities=28% Similarity=0.402 Sum_probs=86.7
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccc-cCcc---cCCCceEEEEecCCCCCceeEEEEEecCCCCC
Q 004941 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKAL-AMGR---ESASMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (722)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal-~M~~---~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~ 102 (722)
.+++.-|+|+|++|++..+|.|+|+||+++||+|||+||+ +|+. .+++.|.+++++|... +|||||++++. .
T Consensus 580 ~~~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~-~~eyK~~~~~~--~- 655 (683)
T 3bmv_A 580 TGNQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGT-TIQFKFIKKNG--N- 655 (683)
T ss_dssp SSSEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTC-EEEEEEEEESS--S-
T ss_pred CCCeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCCCCcEEEEEEeCCCC-cEEEEEEEEcC--C-
Confidence 4679999999999999999999999999999999999999 9999 8999999999998765 89999999974 3
Q ss_pred ceeeccCCCcccccCCCCCC---CCcc
Q 004941 103 PCIVEEGPNRLLTGGALQGD---SSWR 126 (722)
Q Consensus 103 ~~~wE~g~NR~l~~~~~~~~---~~wr 126 (722)
.+.||+|+||++++|..... .+||
T Consensus 656 ~~~WE~g~Nr~~~~~~~~~~~~~~~W~ 682 (683)
T 3bmv_A 656 TITWEGGSNHTYTVPSSSTGTVIVNWQ 682 (683)
T ss_dssp CCEECCSSCEEEECCSSSCEEEEEECC
T ss_pred ceEecCCCCeeEECCCCCceEEEeecC
Confidence 78999999999999986543 4564
No 35
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=99.60 E-value=3.9e-15 Score=147.72 Aligned_cols=137 Identities=16% Similarity=0.121 Sum_probs=96.7
Q ss_pred CCccEEEecccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHhc-CCCcccccc
Q 004941 527 TPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-GFPKIQWRA 605 (722)
Q Consensus 527 ~~~~IyLvRHGes~~n~~~~~~GD~pLTe~G~~QA~~L~~~L~~~l~~~~~~~V~sSpl~RaiQTA~~i~-g~~v~~~~~ 605 (722)
.+++|||||||++.++..+. |.|||++|++||+.++++|+++ ...++.|||||+.||+|||+.+. ..++.....
T Consensus 18 ~~k~L~L~RHaka~~~~~D~---dRpLt~~G~~~a~~~~~~l~~~--~~~~d~i~~Spa~Ra~qTa~~~~~~~~~~~~~~ 92 (186)
T 4hbz_A 18 GARTLVLMRHAAAGSAVRDH---DRPLTPDGVRAATAAGQWLRGH--LPAVDVVVCSTAARTRQTLAATGISAQVRYRDE 92 (186)
T ss_dssp CCEEEEEEECCCBCCCSSGG---GCCBCHHHHHHHHHHHHHHHHH--SCCCCEEEEESSHHHHHHHHHHTCCSEEEEEGG
T ss_pred CCcEEEEEECCccCCCCCCC---CCCCCHHHHHHHHHhhhHhhhc--ccCCCccccCcchhHHHHHHhhccccccccccc
Confidence 45899999999998864322 8899999999999999999877 67899999999999999999872 222222211
Q ss_pred cccccCCcCCCCCHHHHHhhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEeCHHHHHHHHHHH
Q 004941 606 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYF 685 (722)
Q Consensus 606 L~Ei~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~r~P~gES~~dv~~Rl~~~l~eL~~~~~~VLIVSHg~vIr~Ll~~l 685 (722)
|-+ .+..+ +..++.++....++++||+|...|..+..++
T Consensus 93 ly~-------------------------------------~~~~~----~l~~i~~~~~~~~~vllvGHnP~l~~l~~~L 131 (186)
T 4hbz_A 93 LYG-------------------------------------GGVDE----ILAEVAAVPADASTVLVVGHAPTIPATGWEL 131 (186)
T ss_dssp GTT-------------------------------------CCHHH----HHHHHHTSCTTCSEEEEEECTTHHHHHHHHH
T ss_pred ccc-------------------------------------cChHH----HHHHHHhccCCCCeeeecccCCCHHHHHHHH
Confidence 111 01112 2223344444567899999999999999888
Q ss_pred hCCCC-------C---CCCCcccCCcEEEEEEEC
Q 004941 686 ADRPL-------K---EIPHIETPLHTIIEIQMG 709 (722)
Q Consensus 686 ~g~~~-------~---~~~~l~~p~~sI~el~~~ 709 (722)
.+... . ......+|.+++..|++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~fpTa~~avl~~~ 165 (186)
T 4hbz_A 132 VRQSLLNRDADPSSGAGDELRHFAAGTFAVLSTT 165 (186)
T ss_dssp HHHHHHHTTCCTTCCTTGGGGCCCTTCEEEEEES
T ss_pred hccccccccchhhhhhHhhhcCCCCeEEEEEECC
Confidence 65211 1 111235788999888875
No 36
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=99.60 E-value=1.3e-15 Score=178.93 Aligned_cols=97 Identities=28% Similarity=0.428 Sum_probs=87.2
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccc-cCcc---cCCCceEEEEecCCCCCceeEEEEEecCCCCC
Q 004941 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKAL-AMGR---ESASMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (722)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal-~M~~---~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~ 102 (722)
.+++.-|+|+|++|++..+|+|+|+||+++||+|||+||+ +|.. .+++.|.++|++|... +|||||++++ ...
T Consensus 576 ~~~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~-~~eyK~v~~~--~~~ 652 (680)
T 1cyg_A 576 TNDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGK-TIEFKFIKKD--SQG 652 (680)
T ss_dssp SSCEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSC-EEEEEEEEEC--TTS
T ss_pred CCCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCcEEEEEEeCCCC-cEEEEEEEEe--CCC
Confidence 3579999999999999999999999999999999999999 9999 9999999999998764 8999999997 456
Q ss_pred ceeeccCCCcccccCCCCCC---CCcc
Q 004941 103 PCIVEEGPNRLLTGGALQGD---SSWR 126 (722)
Q Consensus 103 ~~~wE~g~NR~l~~~~~~~~---~~wr 126 (722)
.+.||+|+||++++|..... .+||
T Consensus 653 ~~~WE~g~Nr~~~~~~~~~~~~~~~W~ 679 (680)
T 1cyg_A 653 NVTWESGSNHVYTTPTNTTGKIIVDWQ 679 (680)
T ss_dssp CEEECCSSCEEEECCSSSCEEEEEECC
T ss_pred CeEeCCCCCeeEECCCCCcEEEEEecC
Confidence 78999999999999986643 4564
No 37
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=99.59 E-value=1.4e-15 Score=178.66 Aligned_cols=96 Identities=28% Similarity=0.412 Sum_probs=86.6
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccc-cCcc---cCCCceEEEEecCCCCCceeEEEEEecCCCCC
Q 004941 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKAL-AMGR---ESASMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (722)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal-~M~~---~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~ 102 (722)
.+++.-|+|+|++|++..+|.|+|+||+++||+|||+||+ +|.. .+++.|.+++++|... +|||||++++.+
T Consensus 583 ~~~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~-~~eyK~~~~~~~--- 658 (686)
T 1d3c_A 583 SGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAGK-TIEFKFLKKQGS--- 658 (686)
T ss_dssp SSSEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSCTTCEEEEEEEETTC-EEEEEEEEEETT---
T ss_pred CCCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCeEEEEEEeCCCC-cEEEEEEEEcCC---
Confidence 4579999999999999999999999999999999999999 9999 9999999999998764 899999999743
Q ss_pred ceeeccCCCcccccCCCCCC---CCcc
Q 004941 103 PCIVEEGPNRLLTGGALQGD---SSWR 126 (722)
Q Consensus 103 ~~~wE~g~NR~l~~~~~~~~---~~wr 126 (722)
.+.||+|+||++++|..... .+||
T Consensus 659 ~~~WE~g~Nr~~~~~~~~~~~~~~~W~ 685 (686)
T 1d3c_A 659 TVTWEGGSNHTFTAPSSGTATINVNWQ 685 (686)
T ss_dssp EEEECCSSCEEEECCSSSCEEEEEECC
T ss_pred ceEecCCCCeEEECCCCCcEEEEEecC
Confidence 89999999999999986543 4554
No 38
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Probab=99.49 E-value=4.3e-14 Score=160.38 Aligned_cols=91 Identities=16% Similarity=0.234 Sum_probs=82.3
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCcccc-ccCcccCCC-ceEEEEecCCCCCceeEEEEEecCCCCCce
Q 004941 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKA-LAMGRESAS-MWELSFVVPPNHETLDFKFLLKPKYGNGPC 104 (722)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~ka-l~M~~~~~~-~W~~~l~~~~~~~~leyKf~~~~~~~~~~~ 104 (722)
.+.+.-|+|+|.+|+...+|.|+|+||+++||+||++|| ++|+..+++ .|.++|++|... .|||||++++ ++..+
T Consensus 416 t~~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~~~p~~W~~~v~lp~~~-~~eYKyv~~~--~~g~v 492 (516)
T 1vem_A 416 GVTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAER-NIEFKAFIKS--KDGTV 492 (516)
T ss_dssp SCCEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETTC-CEEEEEEEEC--TTSCE
T ss_pred ccCccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccCCCCCEEEEEEEECCCC-cEEEEEEEEe--CCCCe
Confidence 467899999999999999999999999999999999999 799998888 999999998865 7999999986 44556
Q ss_pred -eeccCCCcccccCCCC
Q 004941 105 -IVEEGPNRLLTGGALQ 120 (722)
Q Consensus 105 -~wE~g~NR~l~~~~~~ 120 (722)
.||+|+||++++|...
T Consensus 493 ~~WE~g~NR~~~~p~~~ 509 (516)
T 1vem_A 493 KSWQTIQQSWNPVPLKT 509 (516)
T ss_dssp EEECSSCEEESSCCSSC
T ss_pred eEEeCCCCEEEecCCCC
Confidence 9999999999988754
No 39
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=99.46 E-value=7.6e-14 Score=161.06 Aligned_cols=89 Identities=18% Similarity=0.300 Sum_probs=80.3
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccCC----CceEEEEecCCCCCceeEEEEEecCCCCC
Q 004941 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESA----SMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (722)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~----~~W~~~l~~~~~~~~leyKf~~~~~~~~~ 102 (722)
.+++.-|+|+|+++ +..+|.|+|+||+++||+||++||++|+..++ +.|.++|++|... .|||||++++ .+.
T Consensus 493 ~~~~v~v~F~v~~~-t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~~~-~~eYKyvv~~--~~g 568 (599)
T 2vn4_A 493 TPTSVAVTFHELVS-TQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGD-VVEYKYINVG--QDG 568 (599)
T ss_dssp CCSEEEEEEEEECC-CCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEETTC-EEEEEEEEEC--TTC
T ss_pred CCCeEEEEEEEeEE-cCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCCCC-cEEEEEEEEC--CCC
Confidence 45678999999997 88999999999999999999999999999997 9999999997765 7999999986 345
Q ss_pred ceeeccCCCcccccCCC
Q 004941 103 PCIVEEGPNRLLTGGAL 119 (722)
Q Consensus 103 ~~~wE~g~NR~l~~~~~ 119 (722)
.+.||.|+||++++|..
T Consensus 569 ~~~WE~g~NR~~~~p~~ 585 (599)
T 2vn4_A 569 SVTWESDPNHTYTVPAV 585 (599)
T ss_dssp CEEECCSSCEEEECCCC
T ss_pred ceEeCCCCCEEEecCcc
Confidence 67799999999998876
No 40
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=99.42 E-value=2.1e-13 Score=160.17 Aligned_cols=91 Identities=24% Similarity=0.375 Sum_probs=82.3
Q ss_pred CCceEEEEEEEEecccC-CCcEEEEecCCCccCCCCc------cccc-cCcccCCCceEEEEecCCCCCceeEEEEEecC
Q 004941 27 AGGQFYVSLKMVNIKLK-GDLIPHVYGSVPLVGSWDS------SKAL-AMGRESASMWELSFVVPPNHETLDFKFLLKPK 98 (722)
Q Consensus 27 ~~~~~~v~lkv~aP~l~-~~~~l~l~Gs~~~LG~W~~------~kal-~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~ 98 (722)
.+.+.-|+|+|++++.. .+|.|+|+||+++||+||+ ++|+ +|...+.+.|.+++++|... +|||||++++.
T Consensus 578 ~~~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~~~~~~W~~~v~l~~~~-~~eyKy~~~~~ 656 (686)
T 1qho_A 578 SGTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGK-TIQFKFFIKRA 656 (686)
T ss_dssp SSSEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETTC-EEEEEEEEECT
T ss_pred CCCeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhcccccCCCCcEEEEEEeCCCC-eEEEEEEEEcC
Confidence 35788999999999998 9999999999999999999 9999 99999999999999998865 79999999863
Q ss_pred CCCCceeeccCCCcccccCCCC
Q 004941 99 YGNGPCIVEEGPNRLLTGGALQ 120 (722)
Q Consensus 99 ~~~~~~~wE~g~NR~l~~~~~~ 120 (722)
+..+.||+|+||++++|...
T Consensus 657 --~~~~~We~~~nr~~~~~~~~ 676 (686)
T 1qho_A 657 --DGTIQWENGSNHVATTPTGA 676 (686)
T ss_dssp --TSCEEECCSSCEEEECCSSS
T ss_pred --CCCEEeCCCCCeeEECCCCc
Confidence 44679999999999988754
No 41
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=99.40 E-value=2.3e-14 Score=163.41 Aligned_cols=91 Identities=21% Similarity=0.298 Sum_probs=0.0
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccCc-ccCCCceEEEEecCCCCCceeEEEEEecCCCC-Cce
Q 004941 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMG-RESASMWELSFVVPPNHETLDFKFLLKPKYGN-GPC 104 (722)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~-~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~-~~~ 104 (722)
.+.+.-|+|+|.+++...+|.|+|+||+++||+||++||++|+ ..+++.|.+++++|... +|||||++++.+.. ..+
T Consensus 427 ~~~~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~W~~~v~lp~~~-~~eyKy~~~~~~~~~~~~ 505 (527)
T 1gcy_A 427 PGALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDTSGYPTWKGSIALPAGQ-NEEWKCLIRNEANATQVR 505 (527)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCEEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccCCCCCeEEEEEEeCCCC-cEEEEEEEEeCCCCccee
Confidence 3568999999999999999999999999999999999999999 47899999999998865 79999999874333 478
Q ss_pred eeccCCCcccccCC
Q 004941 105 IVEEGPNRLLTGGA 118 (722)
Q Consensus 105 ~wE~g~NR~l~~~~ 118 (722)
.||+|+||++++|.
T Consensus 506 ~We~g~nr~~~~~~ 519 (527)
T 1gcy_A 506 QWQGGANNSLTPSE 519 (527)
T ss_dssp --------------
T ss_pred EecCCCCeeEECCC
Confidence 99999999999885
No 42
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.37 E-value=2.7e-12 Score=142.31 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=95.7
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
...|.+|+|+|+|||||||+|++|++.+++. +++.|+++ .++.+.+.+..++.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~-----~i~~D~~~-------------------~~~~~~~~~~~~l~--- 307 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYV-----HVNRDTLG-------------------SWQRCVSSCQAALR--- 307 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCE-----ECCGGGSC-------------------SHHHHHHHHHHHHH---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcE-----EEccchHH-------------------HHHHHHHHHHHHHh---
Confidence 4567899999999999999999999987765 66665541 13334444555444
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 004941 397 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 475 (722)
Q Consensus 397 ~~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri 475 (722)
.|..||+|++|.....|+.+.++ .+.++.+.+|.+.|+ .+++.+|+..|........ . .+++.++
T Consensus 308 -----~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~e~l~~R~~~R~~~~~~~~-~-~~~~~~~------ 373 (416)
T 3zvl_A 308 -----QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT-IEQARHNNRFREMTDPSHA-P-VSDMVMF------ 373 (416)
T ss_dssp -----TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC-HHHHHHHHHHHHHHCTTCC-C-CCHHHHH------
T ss_pred -----cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC-HHHHHHHHHhhcccCCCcC-C-CCHHHHH------
Confidence 79999999999999999999888 556777777777675 5666777776654222222 2 3455533
Q ss_pred HhhhcccccCCCC---CeEEEeec
Q 004941 476 ANYEKVYEPVDEG---SYIKMIDM 496 (722)
Q Consensus 476 ~~y~~~yEpl~e~---~yik~i~~ 496 (722)
.+.+.||+++.. .+|..+|+
T Consensus 374 -~~~~~~e~P~~~E~fd~v~~v~~ 396 (416)
T 3zvl_A 374 -SYRKQFEPPTLAEGFLEILEIPF 396 (416)
T ss_dssp -HHHHHCCCCCGGGTCSEEEEECC
T ss_pred -HHHHhcCCCCcccCCcEEEEEec
Confidence 344446666633 78888887
No 43
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.34 E-value=4.1e-12 Score=122.31 Aligned_cols=120 Identities=14% Similarity=0.069 Sum_probs=77.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHH-HHhhcCCceEEEechhhHHHhhcCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTR-YLRWLGHDTKHFNVGKYRRLKHGVNQS--ADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~-~L~~~g~~t~v~~~ddyRr~~~g~~~~--~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
|.+|+|+|+|||||||+|+.|++ .+++ .+++.|.+|+...+.... ..| ....-....+..... +.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~-----~~i~~d~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~ 69 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGF-----YNINRDDYRQSIMAHEERDEYKY----TKKKEGIVTGMQFDT---AK 69 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTE-----EEECHHHHHHHHTTSCCGGGCCC----CHHHHHHHHHHHHHH---HH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCc-----EEecHHHHHHHhhCCCccchhhh----chhhhhHHHHHHHHH---HH
Confidence 57899999999999999999998 3443 488889998866542111 112 122111111111111 12
Q ss_pred HHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 004941 397 SWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 452 (722)
Q Consensus 397 ~~l~--~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~ 452 (722)
.++. ..|..||+|+++.....|+.+.++ ...++++.+|.+.| +.+++.+|+..|.
T Consensus 70 ~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~-~~~~~~~R~~~R~ 127 (181)
T 1ly1_A 70 SILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV-PWTELVKRNSKRG 127 (181)
T ss_dssp HHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCC-CHHHHHHHHTTCG
T ss_pred HHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeC-CHHHHHHHHhccc
Confidence 2332 478999999999999888888877 44566666666667 4667777776553
No 44
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.31 E-value=7.1e-11 Score=115.14 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=76.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 398 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~ 398 (722)
.|.+|+|+|+|||||||+|+.|+++|++. +++.|++|+...+.. . .......+.....+...+.++...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~-----~i~~D~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~ 72 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLP-----LLSKDAFKEVMFDGL---G---WSDREWSRRVGATAIMMLYHTAAT 72 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHHH---C---CCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCe-----EecHHHHHHHHHHhc---C---ccchHHHHHhhHHHHHHHHHHHHH
Confidence 56899999999999999999999998765 788888887554311 0 111222222222222222222222
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 004941 399 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQ 453 (722)
Q Consensus 399 l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~~ 453 (722)
+...|..||+|.++.....+..+.++ ...+...++|.+.|+ ++++.+|+..|..
T Consensus 73 ~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~-~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 73 ILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVAS-GDVLVERILSRIA 127 (193)
T ss_dssp HHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECC-HHHHHHHHHHHHH
T ss_pred HHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHhcC
Confidence 33468899999999333233455555 334555566666664 7778888877653
No 45
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.22 E-value=1.2e-10 Score=120.56 Aligned_cols=116 Identities=19% Similarity=0.168 Sum_probs=81.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-NEVAALAMEDMIS 397 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~-~~va~~~l~d~~~ 397 (722)
++.+|+|+|+|||||||+|+.|+++|...|....+++.|.+|....+ |....+..++.. ...+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~-------~~~~~e~~~~~~~~~~i~~~------ 69 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV-------WKEKYEEFIKKSTYRLIDSA------ 69 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS-------CCGGGHHHHHHHHHHHHHHH------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh-------hhHHHHHHHHHHHHHHHHHH------
Confidence 35799999999999999999999998877777766788888754322 333333322222 1222222
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHh
Q 004941 398 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLK 451 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r 451 (722)
+. . ..||+|+++.....|+.+.++ ...+...++|.+.|+ .+++.+|+..|
T Consensus 70 -l~-~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~-~e~~~~R~~~R 120 (260)
T 3a4m_A 70 -LK-N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKAS-LDVLIRRNIER 120 (260)
T ss_dssp -HT-T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECC-HHHHHHHHHHT
T ss_pred -hh-C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHhC
Confidence 22 4 899999999999999988887 556666666666775 66666676654
No 46
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.20 E-value=9.9e-11 Score=122.90 Aligned_cols=120 Identities=14% Similarity=0.085 Sum_probs=79.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH-hhcCCceEEEechhhHHHhhcCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYL-RWLGHDTKHFNVGKYRRLKHGVNQS--ADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L-~~~g~~t~v~~~ddyRr~~~g~~~~--~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
|.+|+|+|+|||||||+|+.|++++ ++ .+++.|++|+...+.... ..|+ ...-....+.+ .+.+.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~-----~~i~~D~~r~~~~~~~~g~~~~~~----~~~~~~~~~~~---~~~~~ 69 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGF-----YNINRDDYRQSIMAHEERDEYKYT----KKKEGIVTGMQ---FDTAK 69 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTE-----EEECHHHHHHHHTTSCCCC---CC----HHHHHHHHHHH---HHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCc-----EEecccHHHHHhccCCcccccccc----hhhhhHHHHHH---HHHHH
Confidence 5689999999999999999999864 43 488999998866532111 0222 11111111111 11122
Q ss_pred HHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 004941 397 SWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 452 (722)
Q Consensus 397 ~~l~--~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~ 452 (722)
..+. ..|..||+|+++.....|+.+.++ .+.++++.+|.+.| +.+++.+|+..|.
T Consensus 70 ~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 70 SILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV-PWTELVKRNSKRG 127 (301)
T ss_dssp HHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCC-CHHHHHHHHHHCG
T ss_pred HHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEC-CHHHHHHHHHhcc
Confidence 2332 478999999999999999988877 55677766777667 5677777777654
No 47
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.13 E-value=2.5e-10 Score=120.37 Aligned_cols=153 Identities=11% Similarity=0.079 Sum_probs=90.1
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ-SADFFRADNPEGMEARNEVAALAMEDM 395 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~-~~~~~~~~~~~~~~~~~~va~~~l~d~ 395 (722)
...|.+|+|+|.|||||||+|+.|++.+. ....+++.|.+|....+... ... +.+...+.. ..........+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~~~~~~~~~~~~-~~~~a~~~~---~~~~~~~~~~~ 102 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQQHPNFDELVKL-YEKDVVKHV---TPYSNRMTEAI 102 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHTTSTTHHHHHHH-HGGGCHHHH---HHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHHhchhhHHHHHH-ccchhhhhh---hHHHHHHHHHH
Confidence 34688999999999999999999998863 12347888888753211000 000 111111111 11111111112
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHH----HHHHHHhhhcCCCCCCCCChHHHHHH
Q 004941 396 ISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDII----ERNIRLKIQQSPDYAEEPDFEAGLQD 470 (722)
Q Consensus 396 ~~~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i----~~ri~~r~~~~pd~~~~~d~e~a~~d 470 (722)
+..+.+.|..||+|+++.....+..+++. .+.|+.+.++.+.|+ +++. .+|+..|.......... .+++..+.
T Consensus 103 v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p-~~~~~l~~~~Rl~~R~~~g~l~~R~-~~~e~~~~ 180 (287)
T 1gvn_B 103 ISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVP-KINSYLGTIERYETMYADDPMTARA-TPKQAHDI 180 (287)
T ss_dssp HHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCC-HHHHHHHHHHHHHHHHHHCTTTCCC-CCHHHHHH
T ss_pred HHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECC-HHHHHHHHHHHHHHHHHhCCCCCCC-CCHHHHHH
Confidence 22223368999999999998877777666 666887766666665 5555 77777665433323333 44556666
Q ss_pred HHHHHHhh
Q 004941 471 FKNRLANY 478 (722)
Q Consensus 471 f~~Ri~~y 478 (722)
..+|+..-
T Consensus 181 i~~rl~~a 188 (287)
T 1gvn_B 181 VVKNLPTN 188 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
No 48
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.12 E-value=5.6e-10 Score=108.93 Aligned_cols=120 Identities=20% Similarity=0.265 Sum_probs=80.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 397 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~ 397 (722)
.++.+|+++|+|||||||+++.|++.|...+.+..+++.|.+|.... ....|....+...++....++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~------- 80 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVS---EGAGFTREERLRHLKRIAWIARL------- 80 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTT---TTCCCCHHHHHHHHHHHHHHHHH-------
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHh---hccCCChhhHHHHHHHHHHHHHH-------
Confidence 35679999999999999999999999998888888898888865332 22223221122222222222222
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHH
Q 004941 398 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 449 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~ 449 (722)
+.+.|.+||+|.++.....|+.++++ ...+.+.++|.+.|+ ++++.+|+.
T Consensus 81 -~~~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~-~e~~~~R~~ 131 (186)
T 2yvu_A 81 -LARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKAS-LEEVIRRDP 131 (186)
T ss_dssp -HHTTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHCH
T ss_pred -HHhCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCC-HHHHHHhhh
Confidence 33478999999999888888888887 444445555555565 666666654
No 49
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.11 E-value=5.6e-10 Score=128.48 Aligned_cols=140 Identities=15% Similarity=0.148 Sum_probs=95.5
Q ss_pred CCCccccchhhhhhhccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcC-CceEEEechhhHHHhhcCCCCCCCC
Q 004941 295 SMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKYRRLKHGVNQSADFF 373 (722)
Q Consensus 295 ~~p~~~~~~~~~~~~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g-~~t~v~~~ddyRr~~~g~~~~~~~~ 373 (722)
..|.+......+........+.++.+.+|+|+|+|||||||+|++|+++|++.| ..+.++|.|.+|+.+ .....|.
T Consensus 371 ~~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l---~~~~~f~ 447 (573)
T 1m8p_A 371 HIPEWFSYPEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHEL---SSELGFT 447 (573)
T ss_dssp CCCTTTSCHHHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHT---CTTCCCS
T ss_pred CCCcccccccccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHh---ccccCCC
Confidence 344443322344444444445577889999999999999999999999999887 888899999887743 3334454
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHc-CCceEEEEEEEeCCHHHHHHH
Q 004941 374 RADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAE-GNCKIIFLETICNDRDIIERN 447 (722)
Q Consensus 374 ~~~~~~~~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~-~~~~viflE~~c~d~~~i~~r 447 (722)
..++.+.++++.++++..++ .|.+||+|.+++.+..|+.++++.+ .+ .++.|.+.|+ .+++.+|
T Consensus 448 ~~er~~~i~ri~~v~~~~~~--------~g~~VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~-~ev~~~R 512 (573)
T 1m8p_A 448 REDRHTNIQRIAFVATELTR--------AGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATP-LEHCEQS 512 (573)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TTCEEEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCC-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHh--------CCCEEEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCC-HHHHHHH
Confidence 33344445555555555444 8999999999999999999998843 23 3334444454 5666655
No 50
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.05 E-value=1.2e-09 Score=108.30 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=79.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 397 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~ 397 (722)
..+.+|+++|+|||||||+|+.|++.|...|.-+..++.|++|+.. .....|..+.....++....++..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------- 92 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGL---NRDLSFKAEDRAENIRRVGEVAKL------- 92 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT---TTTCCSSHHHHHHHHHHHHHHHHH-------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHh---hcccCcChHHHHHHHHHHHHHHHH-------
Confidence 3567999999999999999999999998666666688888876522 222233322222223333344443
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHH
Q 004941 398 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNI 448 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri 448 (722)
+.+.|..+|++..+..++.|+.++++.. +..++.|.+.|+ .+++.+|+
T Consensus 93 -~~~~~~~vi~~~~~~~~~~r~~~~~~~~-~~~~~~v~L~a~-~e~~~~R~ 140 (200)
T 3uie_A 93 -FADAGIICIASLISPYRTDRDACRSLLP-EGDFVEVFMDVP-LSVCEARD 140 (200)
T ss_dssp -HHHTTCEEEEECCCCCHHHHHHHHHTSC-TTSEEEEEECCC-HHHHHHHC
T ss_pred -HHhCCceEEEecCCchHHHHHHHHHhcC-CCCEEEEEEeCC-HHHHHHhc
Confidence 3347999999999999999999988743 234444444564 56666664
No 51
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.05 E-value=1.3e-09 Score=105.07 Aligned_cols=123 Identities=16% Similarity=0.091 Sum_probs=73.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC--C--CC---CCCCCHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--A--DF---FRADNPEGMEARNEVAALAM 392 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~--~--~~---~~~~~~~~~~~~~~va~~~l 392 (722)
+.+|+++|+|||||||+|+.|++.|+.. ...++.|++|+...+.... . .| +.......++.........+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEP---WLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV 79 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSC---EEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCC---eEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHH
Confidence 4689999999999999999999997642 3346688887644331100 0 11 11112233333222111111
Q ss_pred HHHHHHHhcCCeEEEEeCCCC-CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 004941 393 EDMISWMHEGGQVGIFDATNS-SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 451 (722)
Q Consensus 393 ~d~~~~l~~~G~vVIvDAtn~-~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r 451 (722)
.-+.+.|..||+|+++. ....|+.+++... +..++++.+.|+ .+++.+|++.|
T Consensus 80 ----~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~~~-~e~l~~R~~~r 133 (178)
T 1qhx_A 80 ----VAMARAGARIIIDDVFLGGAAAQERWRSFVG-DLDVLWVGVRCD-GAVAEGRETAR 133 (178)
T ss_dssp ----HHHHHTTCEEEEEECCTTTHHHHHHHHHHHT-TCCEEEEEEECC-HHHHHHHHHHT
T ss_pred ----HHHHhcCCeEEEEeccccChHHHHHHHHHhc-CCcEEEEEEECC-HHHHHHHHHhh
Confidence 11233788999999886 4555666666642 334556666674 77788888765
No 52
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.01 E-value=8.3e-10 Score=109.19 Aligned_cols=113 Identities=11% Similarity=0.173 Sum_probs=70.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh--hcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK--HGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 397 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~--~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~ 397 (722)
+.+|+|+|.|||||||+|+.|++.+++. +++.|+++... ....... .+.. ......+..+ ..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~-----~i~~d~~~~~~~~~~~~~g~-~~~~--~~~~~~~~~l--------~~ 81 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYP-----FIEGDALHPPENIRKMSEGI-PLTD--DDRWPWLAAI--------GE 81 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCC-----EEEGGGGCCHHHHHHHHHTC-CCCH--HHHHHHHHHH--------HH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCE-----EEeCCcCcchhhHHHHhcCC-CCCc--hhhHHHHHHH--------HH
Confidence 5689999999999999999999998765 77777763110 0000001 1111 1111111111 11
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 004941 398 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 452 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~ 452 (722)
.+ ..|..+|+|+++.....|+.+.++......++||+ | +.+++.+|+..|.
T Consensus 82 ~~-~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~--~-~~e~~~~Rl~~R~ 132 (202)
T 3t61_A 82 RL-ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLH--G-SESVLAERMHHRT 132 (202)
T ss_dssp HH-TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEE--C-CHHHHHHHHHHHH
T ss_pred HH-hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEe--C-CHHHHHHHHHHhh
Confidence 12 36889999999999888888877653333455554 5 5778888887764
No 53
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.00 E-value=2.1e-09 Score=107.35 Aligned_cols=117 Identities=24% Similarity=0.235 Sum_probs=78.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 397 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~-~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~ 397 (722)
.+.+|+++|+|||||||+|+.|+++|. ..|+...+++.|.+|... .....|+...+...++.+.+++..+++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l---~~~~~~~~~~r~~~~~~~~~~~~~~l~---- 96 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL---NKDLGFSEADRNENIRRIAEVAKLFAD---- 96 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTT---TTTCCSSHHHHHHHHHHHHHHHHHHHH----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhh---ccccCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 467999999999999999999999998 678778889887776432 222334433334444444343444443
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHc-------CCceEEEEEEEeCCHHHHHHH
Q 004941 398 WMHEGGQVGIFDATNSSRKRRNMLMKMAE-------GNCKIIFLETICNDRDIIERN 447 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~~~~~R~~~~~l~~-------~~~~viflE~~c~d~~~i~~r 447 (722)
.|..||+|..+.....|+.+.++.. .+.+.++|.+.|+ ++++.+|
T Consensus 97 ----~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~-~e~~~~R 148 (211)
T 1m7g_A 97 ----SNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVP-VEVAEQR 148 (211)
T ss_dssp ----TTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECC-HHHHHTS
T ss_pred ----CCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCC-HHHHHHh
Confidence 7899999977656677888888743 2334455555565 5555555
No 54
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.00 E-value=2.2e-09 Score=124.21 Aligned_cols=121 Identities=22% Similarity=0.242 Sum_probs=86.8
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
++++.+|+|+|+|||||||+|+.|+++|...|.....+|.|..|. +......|....+++.++.+.++++.+++
T Consensus 49 ~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~---~L~~~~~fs~~dree~~r~i~eva~~~l~--- 122 (630)
T 1x6v_B 49 GFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ---GLNKNLGFSPEDREENVRRIAEVAKLFAD--- 122 (630)
T ss_dssp SCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT---TTTTTCCSSHHHHHHHHHHHHHHHHHHHH---
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh---ccCccccCChhhhHHHHHHHHHHHHHHHh---
Confidence 347889999999999999999999999977777787787766654 33333334334455666665555555444
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHH
Q 004941 397 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 449 (722)
Q Consensus 397 ~~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~ 449 (722)
.|.+||.|.++.....|+.++++ .+.+.+++.|.+.|+ .+++.+|+.
T Consensus 123 -----~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap-~Evl~~Rl~ 170 (630)
T 1x6v_B 123 -----AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAP-LHVCEQRDV 170 (630)
T ss_dssp -----TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECC-HHHHHHHCT
T ss_pred -----CCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECC-HHHHHHHhc
Confidence 89999999888777788888888 445555556666665 666767654
No 55
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.00 E-value=1.2e-09 Score=112.60 Aligned_cols=125 Identities=11% Similarity=0.118 Sum_probs=77.9
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhc---CCCCCCCCCCCCHHHHHH-HHHHHHHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG---VNQSADFFRADNPEGMEA-RNEVAALAM 392 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g---~~~~~~~~~~~~~~~~~~-~~~va~~~l 392 (722)
...|.+|+|+|+|||||||+|+.|++.++ ....+++.|.+|+.... .....+. ........ ..+.+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~~~~~~~~i~~~~g~---~~~~~~~~~~~~~~---- 98 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRSQHPHYLELQQEYGK---DSVEYTKDFAGKMV---- 98 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGTTSTTHHHHHTTCSS---TTHHHHHHHHHHHH----
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHHhchhHHHHHHHcCc---hHHHHhhHHHHHHH----
Confidence 45678999999999999999999999875 23457888888763211 0011111 11111110 11111
Q ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 004941 393 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 452 (722)
Q Consensus 393 ~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r~ 452 (722)
..++..+.+.|..+|+|+++.....+..+.++ .+.|+.+.++.+.| +.+++.+|+..|.
T Consensus 99 ~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~-~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 99 ESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIAT-KPELSYLSTLIRY 158 (253)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHHHHH
Confidence 22222333478889999999887766666665 66787765655555 6777777777664
No 56
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.00 E-value=1.4e-09 Score=124.42 Aligned_cols=144 Identities=20% Similarity=0.224 Sum_probs=96.2
Q ss_pred ccCCCCccccchhhhhhhccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCC
Q 004941 292 TKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSAD 371 (722)
Q Consensus 292 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~ 371 (722)
.....|++......+.+......+.++.+.+|+++|+|||||||+|+.|+++|+..|.++.+++.|..|+.+. ....
T Consensus 344 ~g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~---~~~~ 420 (546)
T 2gks_A 344 QGRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLS---RGLG 420 (546)
T ss_dssp TTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTC---TTCC
T ss_pred CCCCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhc---cccc
Confidence 3455666665455566665555555667889999999999999999999999999898899999998877542 2223
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH-cCCceEEEEEEEeCCHHHHHHHHH
Q 004941 372 FFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMA-EGNCKIIFLETICNDRDIIERNIR 449 (722)
Q Consensus 372 ~~~~~~~~~~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~-~~~~~viflE~~c~d~~~i~~ri~ 449 (722)
|...++...++.+.+++.. +.+.|..||+|++++.+..|+.++++. +.++.++|| .|+ .+++.+|+.
T Consensus 421 f~~~er~~~l~~i~~~~~~--------~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L--~~~-~e~~~~Rl~ 488 (546)
T 2gks_A 421 FSKEDRITNILRVGFVASE--------IVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFV--DAP-VEVCEERDV 488 (546)
T ss_dssp SSHHHHHHHHHHHHHHHHH--------HHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEE--ECC-GGGHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHHH--------HHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEE--eCC-HHHHHHHhh
Confidence 3322222222222233333 333799999999999998888888773 323334444 454 566666653
No 57
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.99 E-value=4.3e-09 Score=102.70 Aligned_cols=157 Identities=14% Similarity=0.219 Sum_probs=87.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCC-----CCCCC---CCHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-----DFFRA---DNPEGMEARNEVAAL 390 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~-----~~~~~---~~~~~~~~~~~va~~ 390 (722)
++.+|+++|.|||||||+|+.|++++++. +++.|++-+.....+... .++.. ... +....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~-------~~~~~ 75 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYT-----HLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPL-------ETVLD 75 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCH-------HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCe-----EEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCH-------HHHHH
Confidence 45689999999999999999999998765 777776533221000000 00000 001 01111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 004941 391 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 470 (722)
Q Consensus 391 ~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~d 470 (722)
.+.+.+.-....|..+|+|+.....+.++.+.........++||. | +++++.+|+..|....+ ..+...+.
T Consensus 76 ~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~--~-~~e~~~~R~~~R~~~~~------~~~~~~~~ 146 (196)
T 2c95_A 76 MLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVD--A-GPETMTQRLLKRGETSG------RVDDNEET 146 (196)
T ss_dssp HHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEE--C-CHHHHHHHHHHHHTSSS------CGGGSHHH
T ss_pred HHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEE--C-CHHHHHHHHHccCCcCC------CCCCCHHH
Confidence 122222222336889999997777766666655433223455655 4 57778888876643222 12333455
Q ss_pred HHHHHHhhhcccccCC----CCCeEEEeec
Q 004941 471 FKNRLANYEKVYEPVD----EGSYIKMIDM 496 (722)
Q Consensus 471 f~~Ri~~y~~~yEpl~----e~~yik~i~~ 496 (722)
+.+|+..|.+..+|+- +..++..||.
T Consensus 147 ~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~ 176 (196)
T 2c95_A 147 IKKRLETYYKATEPVIAFYEKRGIVRKVNA 176 (196)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEC
Confidence 6677776655555431 1145555665
No 58
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.97 E-value=7.9e-09 Score=101.04 Aligned_cols=157 Identities=14% Similarity=0.200 Sum_probs=90.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC-----CCCCC---CCCHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-----ADFFR---ADNPEGMEARNEVAAL 390 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~-----~~~~~---~~~~~~~~~~~~va~~ 390 (722)
.+.+|+++|.|||||||+|+.|+++|++. +++.|++-+.....+.. ..++. ....+ +...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~ 78 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFT-----HLSTGELLREELASESERSKLIRDIMERGDLVPSG-------IVLE 78 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHH-------HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCe-----EEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHH-------HHHH
Confidence 35689999999999999999999998755 78887763322100000 00000 00111 1111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 004941 391 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 470 (722)
Q Consensus 391 ~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~d 470 (722)
.+.+.+......|..+|+|......+.+..+.......-.++||+ | +++++.+|+..|.. + . . ..+...+.
T Consensus 79 ~~~~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~--~-~~~~~~~R~~~R~~--~--~-~-~~~~~~~~ 149 (199)
T 2bwj_A 79 LLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMD--C-SADTMTNRLLQMSR--S--S-L-PVDDTTKT 149 (199)
T ss_dssp HHHHHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEE--C-CHHHHHHHHHHTCC--C--C-S-CHHHHHHH
T ss_pred HHHHHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEE--C-CHHHHHHHHHcCCC--C--C-C-CCCCCHHH
Confidence 112222122235889999998888877766654321122356665 5 57778888876532 1 1 1 34555677
Q ss_pred HHHHHHhhhcccccCCC----CCeEEEeec
Q 004941 471 FKNRLANYEKVYEPVDE----GSYIKMIDM 496 (722)
Q Consensus 471 f~~Ri~~y~~~yEpl~e----~~yik~i~~ 496 (722)
+.+|+..|....+|+.+ ..++..||.
T Consensus 150 ~~~r~~~~~~~~~~~~~~~~~~~~~~~id~ 179 (199)
T 2bwj_A 150 IAKRLEAYYRASIPVIAYYETKTQLHKINA 179 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 88888777666665322 144455664
No 59
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=1.3e-09 Score=107.94 Aligned_cols=141 Identities=18% Similarity=0.240 Sum_probs=80.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 399 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l 399 (722)
..+|+++|.|||||||+|+.|++.|++. +++.|++.....+... ..+|...++..++..+. .++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~-----~i~~d~~~~~~~g~~i-~~~~~~~~~~~~~~~e~-------~~l~~l 91 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVP-----FIDLDWYIEERFHKTV-GELFTERGEAGFRELER-------NMLHEV 91 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCH-HHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcchHHHHHHhCCcH-HHHHHhcChHHHHHHHH-------HHHHHH
Confidence 3489999999999999999999998766 7888887664443221 11222222223332221 122223
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHH----HHHHHHH
Q 004941 400 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGL----QDFKNRL 475 (722)
Q Consensus 400 ~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~----~df~~Ri 475 (722)
. .+..+|++........++.+..+.+ ...++||. | +.+++.+|+..+...+|...+. +.+++. +.|.+|.
T Consensus 92 ~-~~~~~vi~~ggg~~~~~~~~~~l~~-~~~vi~L~--~-~~e~l~~Rl~~~~~~Rp~~~~~-~~~~~~~~i~~~~~~r~ 165 (199)
T 3vaa_A 92 A-EFENVVISTGGGAPCFYDNMEFMNR-TGKTVFLN--V-HPDVLFRRLRIAKQQRPILQGK-EDDELMDFIIQALEKRA 165 (199)
T ss_dssp T-TCSSEEEECCTTGGGSTTHHHHHHH-HSEEEEEE--C-CHHHHHHHHHHTGGGCGGGTTC-CHHHHHHHHHHHHHHHH
T ss_pred h-hcCCcEEECCCcEEccHHHHHHHHc-CCEEEEEE--C-CHHHHHHHHhcCCCCCCCcCCC-ChhhHHHHHHHHHHHHH
Confidence 3 3445566655554444444444433 23466666 4 6788899998333446776665 554432 3333455
Q ss_pred Hhhh
Q 004941 476 ANYE 479 (722)
Q Consensus 476 ~~y~ 479 (722)
+.|+
T Consensus 166 ~~y~ 169 (199)
T 3vaa_A 166 PFYT 169 (199)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5443
No 60
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.95 E-value=6.5e-10 Score=108.00 Aligned_cols=139 Identities=19% Similarity=0.248 Sum_probs=77.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 399 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l 399 (722)
+..|+|+|+|||||||+|+.|+++|++. ++|.|++++...+.... .++...++..++..+ .. ++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~-----~i~~d~~~~~~~g~~~~-~~~~~~g~~~~~~~~---~~----~~~~~ 71 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRI-----LYDSDKEIEKRTGADIA-WIFEMEGEAGFRRRE---RE----MIEAL 71 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHTSCHH-HHHHHHHHHHHHHHH---HH----HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHcCCChh-hHHHHhCHHHHHHHH---HH----HHHHH
Confidence 4479999999999999999999999876 88889887766543221 222222233333222 11 12223
Q ss_pred hcCCeEEEEeC--CCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHH--HHhhhcCCCCCCCCCh-HHHHHHHHHH
Q 004941 400 HEGGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNI--RLKIQQSPDYAEEPDF-EAGLQDFKNR 474 (722)
Q Consensus 400 ~~~G~vVIvDA--tn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri--~~r~~~~pd~~~~~d~-e~a~~df~~R 474 (722)
......||... +......|+.+.+ .+ .++||+ | +.+++.+|+ +.+ ..+|...+. +. +...+.+.+|
T Consensus 72 ~~~~~~vi~~gg~~~~~~~~~~~l~~---~~-~vi~L~--~-~~e~l~~Rl~~~~~-~~rp~~~~~-~~~~~l~~~~~~r 142 (185)
T 3trf_A 72 CKLDNIILATGGGVVLDEKNRQQISE---TG-VVIYLT--A-SIDTQLKRIGQKGE-MRRPLFIKN-NSKEKLQQLNEIR 142 (185)
T ss_dssp HHSSSCEEECCTTGGGSHHHHHHHHH---HE-EEEEEE--C-CHHHHHHHHHCCTT-CSSCCCCCH-HHHHHHHHHHHHH
T ss_pred HhcCCcEEecCCceecCHHHHHHHHh---CC-cEEEEE--C-CHHHHHHHHhhcCC-CCCCCCCCC-CHHHHHHHHHHHH
Confidence 22334444322 2233444444433 22 455655 4 578888898 443 336766543 22 3344455566
Q ss_pred HHhhhc
Q 004941 475 LANYEK 480 (722)
Q Consensus 475 i~~y~~ 480 (722)
.+.|++
T Consensus 143 ~~~y~~ 148 (185)
T 3trf_A 143 KPLYQA 148 (185)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 666654
No 61
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.94 E-value=3.6e-09 Score=102.27 Aligned_cols=116 Identities=21% Similarity=0.164 Sum_probs=65.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE-ech----hhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF-NVG----KYRRLKHGVNQSADFFRADNPEGMEARNEVAALAME 393 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~-~~d----dyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~ 393 (722)
++.+|+|+|+|||||||+|+.|+++|+.. ++ +.+ .+|+... .....| ... +...+...+++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~-----~i~d~~~~g~~i~~~~~--~g~~~~-~~~-~~~~~~~~~~i~~~-- 72 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGS-----FVFEPEEMGQALRKLTP--GFSGDP-QEH-PMWIPLMLDALQYA-- 72 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTC-----EECCTHHHHHHHHHTST--TCCSCG-GGS-TTHHHHHHHHHHHH--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCC-----EEEchhhhHHHHHHhCc--cccchh-hhh-HHHHHHHHHHHHHH--
Confidence 46799999999999999999999998764 33 422 2333221 111222 111 11111122222222
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHh
Q 004941 394 DMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLK 451 (722)
Q Consensus 394 d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~~r 451 (722)
+...|.+||+|+++.....++.+.+. .+.++.+.+|.+.| +++++.+|+..|
T Consensus 73 -----l~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~-~~e~~~~R~~~R 125 (183)
T 2vli_A 73 -----SREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIA-PLNVVLERLRRD 125 (183)
T ss_dssp -----HHHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEEC-CHHHHHHHHHTC
T ss_pred -----HHhCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeC-CHHHHHHHHHhc
Confidence 23358899999999988777666655 44555544455556 477788888765
No 62
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.93 E-value=1.7e-09 Score=106.78 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=85.5
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH-hhcCCCCCCCCCCCCHHHHHHH-------HHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL-KHGVNQSADFFRADNPEGMEAR-------NEVA 388 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~-~~g~~~~~~~~~~~~~~~~~~~-------~~va 388 (722)
+..|++|+|+|.|||||||+|+.|++++++. +++.|++-+. ..+.. . + .....+.+ ....
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~-----~i~~d~~~r~~~~~~~-~--~----g~~i~~~~~~g~~~~~~~~ 84 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIP-----QISTGELFRRNIEEGT-K--L----GVEAKRYLDAGDLVPSDLT 84 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHTTC-H--H----HHHHHHHHHHTCCCCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCc-----EEehhHHHHHHHHcCC-h--H----HHHHHHHHHcCCcccHHHH
Confidence 4467899999999999999999999998765 7887776332 11100 0 0 00000000 0011
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCce-EEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHH
Q 004941 389 ALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEA 466 (722)
Q Consensus 389 ~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~-viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~ 466 (722)
...+.+.+... ..|..+|+|+.......++.+..+ .+.+.. .++|.+.| +++++.+|+..|. +++ . +
T Consensus 85 ~~~~~~~~~~~-~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~-~~e~~~~Rl~~R~--r~~---~-~--- 153 (201)
T 2cdn_A 85 NELVDDRLNNP-DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRV-SEEVLLERLKGRG--RAD---D-T--- 153 (201)
T ss_dssp HHHHHHHTTSG-GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHHHHHC--CTT---C-S---
T ss_pred HHHHHHHHhcc-cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHHcCC--CCC---C-C---
Confidence 11111111111 235668999988888777777665 333321 13444556 4677888887662 232 1 2
Q ss_pred HHHHHHHHHHhhhcccccCCC--CCeEEEeec
Q 004941 467 GLQDFKNRLANYEKVYEPVDE--GSYIKMIDM 496 (722)
Q Consensus 467 a~~df~~Ri~~y~~~yEpl~e--~~yik~i~~ 496 (722)
.+.+.+|+..|.+..+|+.+ ...+..||.
T Consensus 154 -~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~ 184 (201)
T 2cdn_A 154 -DDVILNRMKVYRDETAPLLEYYRDQLKTVDA 184 (201)
T ss_dssp -HHHHHHHHHHHHHHTTTHHHHTTTTEEEEEC
T ss_pred -HHHHHHHHHHHHHhhHHHHHHhcCcEEEEeC
Confidence 23466777777665554322 123444554
No 63
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.92 E-value=8.5e-09 Score=99.92 Aligned_cols=148 Identities=14% Similarity=0.230 Sum_probs=79.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCC-----CCCCCCCHHHHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-----DFFRADNPEGMEARNEVAALAME 393 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~-----~~~~~~~~~~~~~~~~va~~~l~ 393 (722)
.+.+|+++|.|||||||+|+.|++++++. +++.|++-+.....+... .++..... .. .++....+.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~-~~---~~~~~~~l~ 75 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWV-----HLSAGDLLRQEQQSGSKDGEMIATMIKNGEI-VP---SIVTVKLLK 75 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCTTHHHHHHHHHTTCC-CC---HHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCe-----EeeHHHHHHHHHhcCCHHHHHHHHHHHCCCC-CC---HHHHHHHHH
Confidence 35789999999999999999999998765 788876533221111000 00000000 00 011111111
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCce-EEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 004941 394 DMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCK-IIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 472 (722)
Q Consensus 394 d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~-viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~ 472 (722)
+.+ ....|..+|+|+.....+.++.+....+.+.. -+.+.+.| +++++.+|+..|..... - .+...+.+.
T Consensus 76 ~~i--~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~-~~e~~~~R~~~R~~~~~-r-----~~~~~~~~~ 146 (194)
T 1qf9_A 76 NAI--DANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDC-PEEVMTQRLLKRGESSG-R-----SDDNIESIK 146 (194)
T ss_dssp HHH--HTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEEC-CHHHHHHHHHHHHTTSC-C-----TTCSHHHHH
T ss_pred HHH--HhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEEC-CHHHHHHHHHhccccCC-C-----CCCCHHHHH
Confidence 111 11257899999988888777777665332111 12333445 57778888876643111 1 122234566
Q ss_pred HHHHhhhccccc
Q 004941 473 NRLANYEKVYEP 484 (722)
Q Consensus 473 ~Ri~~y~~~yEp 484 (722)
+|+..|.+..+|
T Consensus 147 ~ri~~~~~~~~~ 158 (194)
T 1qf9_A 147 KRFNTFNVQTKL 158 (194)
T ss_dssp HHHHHHHHTHHH
T ss_pred HHHHHHHHhHHH
Confidence 777666544444
No 64
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.92 E-value=1.1e-08 Score=99.21 Aligned_cols=148 Identities=15% Similarity=0.234 Sum_probs=79.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCC------CCCCC---CCHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA------DFFRA---DNPEGMEARNEVAA 389 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~------~~~~~---~~~~~~~~~~~va~ 389 (722)
+|.+|+++|.|||||||+|+.|++++++. +++.|++-+......... .++.. ...+ ....+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~l~ 73 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYT-----HLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVE---ITISLLK 73 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHH---HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCe-----EEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHH---HHHHHHH
Confidence 46799999999999999999999998754 788877643222111100 00000 0111 1111111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCce-EEEEEEEeCCHHHHHHHHHHhhh--cCCCCCCCCChHH
Q 004941 390 LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCK-IIFLETICNDRDIIERNIRLKIQ--QSPDYAEEPDFEA 466 (722)
Q Consensus 390 ~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~-viflE~~c~d~~~i~~ri~~r~~--~~pd~~~~~d~e~ 466 (722)
..+......+ ..|..+|+|+.....+.++.+......... -++|.+.| +++++.+|+..|.. .+++ . .
T Consensus 74 ~~~~~~~~~~-~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~~~~~r~~---~-~--- 144 (196)
T 1tev_A 74 REMDQTMAAN-AQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC-NNEICIERCLERGKSSGRSD---D-N--- 144 (196)
T ss_dssp HHHHHHHHHC-TTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEEC-CHHHHHHHHHHHHHTSSCCS---C-C---
T ss_pred HHHHhhhccc-cCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEEC-CHHHHHHHHHcccccCCCCC---C-C---
Confidence 1222111111 247899999999988877766655322221 13344446 46677777766543 1221 1 1
Q ss_pred HHHHHHHHHHhhhccccc
Q 004941 467 GLQDFKNRLANYEKVYEP 484 (722)
Q Consensus 467 a~~df~~Ri~~y~~~yEp 484 (722)
.+.+.+|+..|.+..+|
T Consensus 145 -~~~~~~~~~~~~~~~~~ 161 (196)
T 1tev_A 145 -RESLEKRIQTYLQSTKP 161 (196)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhHHH
Confidence 23445566666555444
No 65
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.90 E-value=9.9e-09 Score=97.27 Aligned_cols=134 Identities=11% Similarity=0.096 Sum_probs=73.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHH-HHHHHHHHHHH-HHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEA-RNEVAALAMED-MISW 398 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~-~~~va~~~l~d-~~~~ 398 (722)
++|+++|.|||||||+|+.| +.+++. +++.|++-+....... ............ +...-...+.+ +...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~-----~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAK-----VIVMSDVVRKRYSIEA---KPGERLMDFAKRLREIYGDGVVARLCVEE 72 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCE-----EEEHHHHHHHHHHHHC------CCHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCc-----EEEHhHHHHHHHHhcC---CChhHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 58999999999999999999 776655 6776655442221111 000011111111 11100011111 1222
Q ss_pred H-hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 004941 399 M-HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDF 471 (722)
Q Consensus 399 l-~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df 471 (722)
+ ...+..+|+|+. .....++.+.+.......++||. | +++++.+|+..|. +++. .. +.+++.+.+
T Consensus 73 l~~~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~--~-~~~~~~~R~~~R~--~~~~-~~-~~~~~~~r~ 138 (179)
T 3lw7_A 73 LGTSNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVH--S-PPKIRYKRMIERL--RSDD-SK-EISELIRRD 138 (179)
T ss_dssp HCSCCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEE--C-CHHHHHHHHHTCC-------CC-CHHHHHHHH
T ss_pred HHhcCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEE--C-CHHHHHHHHHhcc--CCCC-cc-hHHHHHHHH
Confidence 3 246889999998 78888888887754444455555 4 5788888887663 2322 22 455554444
No 66
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.86 E-value=6.5e-09 Score=102.89 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=70.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH------HhhcCCCCCCCCCC-CCHHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR------LKHGVNQSADFFRA-DNPEGMEARNEVAALA 391 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr------~~~g~~~~~~~~~~-~~~~~~~~~~~va~~~ 391 (722)
.+.+|+|+|.|||||||+++.|++.+++. +++.|++++ ...+. .+.. .....+..+..++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~-----~i~~d~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~ 97 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLE-----FAEADAFHSPENIATMQRGI-----PLTDEDRWPWLRSLAEWMDAR 97 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCE-----EEEGGGGSCHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCe-----EEcccccccHHHHHHHhcCC-----CCCCcccccHHHHHHHHHHHH
Confidence 45689999999999999999999988544 778777632 12111 1111 1111223333333332
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 004941 392 MEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 451 (722)
Q Consensus 392 l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r 451 (722)
+ ..|..+|+|++...+..|+.+.++.. .+.++|| .| +.+++.+|+..|
T Consensus 98 ~--------~~g~~viid~~~~~~~~~~~l~~~~~-~~~vv~l--~~-~~e~l~~Rl~~R 145 (200)
T 4eun_A 98 A--------DAGVSTIITCSALKRTYRDVLREGPP-SVDFLHL--DG-PAEVIKGRMSKR 145 (200)
T ss_dssp H--------HTTCCEEEEECCCCHHHHHHHTTSSS-CCEEEEE--EC-CHHHHHHHHTTC
T ss_pred H--------hcCCCEEEEchhhhHHHHHHHHHhCC-ceEEEEE--eC-CHHHHHHHHHhc
Confidence 2 36888999999998888777765532 3344444 46 478888888655
No 67
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.83 E-value=1.1e-08 Score=98.50 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=68.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH------hhcCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL------KHGVNQSADFFRADNPEGMEARNEVAALAM 392 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~------~~g~~~~~~~~~~~~~~~~~~~~~va~~~l 392 (722)
...+|+++|.|||||||+++.|++.+++. +++.|++++. ..+. .+........++.++.++..++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~-----~i~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~ 77 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAA-----FLDGDFLHPRRNIEKMASGE----PLNDDDRKPWLQALNDAAFAMQ 77 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCE-----EEEGGGGCCHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcE-----EEeCccccchHHHHHhhcCc----CCCccccccHHHHHHHHHHHHH
Confidence 35689999999999999999999987644 7888776421 1121 1111111112233333333222
Q ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 004941 393 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 451 (722)
Q Consensus 393 ~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r 451 (722)
..|..+|+|+++..+..|+.+++ .+..+.+|.+.| +.+++.+|+..|
T Consensus 78 --------~~~~~~vi~~~~~~~~~~~~l~~---~~~~~~vv~l~~-~~e~~~~R~~~R 124 (175)
T 1knq_A 78 --------RTNKVSLIVCSALKKHYRDLLRE---GNPNLSFIYLKG-DFDVIESRLKAR 124 (175)
T ss_dssp --------HHCSEEEEECCCCSHHHHHHHHT---TCTTEEEEEEEC-CHHHHHHHHHTS
T ss_pred --------hcCCcEEEEeCchHHHHHHHHHh---cCCCEEEEEEEC-CHHHHHHHHHhc
Confidence 25778999999887776665543 233333444456 577888888765
No 68
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.83 E-value=1.2e-07 Score=93.26 Aligned_cols=120 Identities=14% Similarity=0.213 Sum_probs=66.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhc-CCCCC-----CCCCC---C-CHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG-VNQSA-----DFFRA---D-NPEGMEARNEV 387 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g-~~~~~-----~~~~~---~-~~~~~~~~~~v 387 (722)
.++.+|+++|.|||||||+|+.|++++++. +++.|++-+.... .+... .++.. . .+.....+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~-----~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~ 87 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFV-----HLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNA 87 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCE-----EEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCce-----EEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence 356799999999999999999999987654 7787765332211 11100 00000 0 01111111111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 004941 388 AALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 452 (722)
Q Consensus 388 a~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~ 452 (722)
+ ...+..++..+|+|+.....+....+.........++||. | +++++.+|+..|.
T Consensus 88 i-------~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~--~-~~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 88 I-------SDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFD--C-PEDIMLERLLERG 142 (203)
T ss_dssp H-------HHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEE--C-CHHHHHHHHHHHH
T ss_pred H-------HhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEE--C-CHHHHHHHHHhcc
Confidence 1 1223333368899988766666655544432222355555 5 5677777776654
No 69
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.82 E-value=3.5e-08 Score=95.51 Aligned_cols=118 Identities=21% Similarity=0.212 Sum_probs=73.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 398 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~ 398 (722)
++.+|+++|.|||||||+++.|++.|...|.....++.+..|+.. .....|.....+..++.....+. .
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--------~ 72 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGL---NKNLGFSPEDREENVRRIAEVAK--------L 72 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT---TTTCCSSHHHHHHHHHHHHHHHH--------H
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHH---hhccccccccHHHHHHHHHHHHH--------H
Confidence 467899999999999999999999986556666667776665422 11222222223333333332221 1
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHH
Q 004941 399 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 448 (722)
Q Consensus 399 l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri 448 (722)
+.+.|.+++.+...+....|..++++ ...+...+.|.+.|+ ++++.+|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~R~ 122 (179)
T 2pez_A 73 FADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAP-LHVCEQRD 122 (179)
T ss_dssp HHHTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHC
T ss_pred HHHCCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCC-HHHHHHHH
Confidence 23367788888777766666666666 444555545555664 66666665
No 70
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.78 E-value=8.9e-09 Score=99.95 Aligned_cols=135 Identities=21% Similarity=0.215 Sum_probs=74.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 401 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~~ 401 (722)
+|+|+|.|||||||+|+.|+++|++. +++.|++++...+... ..++...++..++.... .+++. +..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~D~~~~~~~g~~~-~~~~~~~g~~~~~~~~~---~~~~~----~~~ 70 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVG-----LLDTDVAIEQRTGRSI-ADIFATDGEQEFRRIEE---DVVRA----ALA 70 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHSSCH-HHHHHHHCHHHHHHHHH---HHHHH----HHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC-----EEeCchHHHHHcCCCH-HHHHHHhChHHHHHHHH---HHHHH----HHh
Confidence 59999999999999999999998876 8899998776544221 12222223333332221 12221 111
Q ss_pred CCeEEEEeCCC--CCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH-HHHHhh
Q 004941 402 GGQVGIFDATN--SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK-NRLANY 478 (722)
Q Consensus 402 ~G~vVIvDAtn--~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~-~Ri~~y 478 (722)
....||.+..+ .....|+.+. .+ .++||. | +.+++.+|+..|. .+|.+... +.++.++.++ +|.+.|
T Consensus 71 ~~~~vi~~g~~~v~~~~~~~~l~----~~-~vV~L~--~-~~e~~~~Rl~~r~-~r~~~~~~-~~~~~i~~~~~~r~~~~ 140 (184)
T 2iyv_A 71 DHDGVLSLGGGAVTSPGVRAALA----GH-TVVYLE--I-SAAEGVRRTGGNT-VRPLLAGP-DRAEKYRALMAKRAPLY 140 (184)
T ss_dssp HCCSEEECCTTGGGSHHHHHHHT----TS-CEEEEE--C-CHHHHHHHTTCCC-CCSSTTSC-CHHHHHHHHHHHHHHHH
T ss_pred cCCeEEecCCcEEcCHHHHHHHc----CC-eEEEEe--C-CHHHHHHHHhCCC-CCCCccCC-CHHHHHHHHHHHHHHHH
Confidence 23334433221 1233344332 33 456665 5 5778888876553 24555544 4555555543 455555
Q ss_pred h
Q 004941 479 E 479 (722)
Q Consensus 479 ~ 479 (722)
.
T Consensus 141 ~ 141 (184)
T 2iyv_A 141 R 141 (184)
T ss_dssp H
T ss_pred h
Confidence 3
No 71
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.74 E-value=1.8e-07 Score=94.77 Aligned_cols=150 Identities=15% Similarity=0.237 Sum_probs=86.1
Q ss_pred CCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHH--------
Q 004941 314 GPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-------- 385 (722)
Q Consensus 314 ~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~-------- 385 (722)
..+-.++.+|++.|.|||||+|.|+.|+++++.. .+++||.-|..... .++.+.....
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~-----hIstGdllR~~i~~---------~t~lg~~~~~~~~~G~lV 88 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN-----HLSSGDLLRAEVQS---------GSPKGKELKAMMERGELV 88 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE-----EECHHHHHHHHHTT---------CCHHHHHHHHHHHHTCCC
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHCCc-----eEcHHHHHHHHHHc---------CCchHHHHHHHHhcCCCC
Confidence 3444578899999999999999999999998766 67777664422211 1221111111
Q ss_pred --HHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCC
Q 004941 386 --EVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPD 463 (722)
Q Consensus 386 --~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d 463 (722)
++...++.+-+.-..+....+|+|.---+..+.+.+.+....-..+++++ | +++++.+|+..|.. -.+ .
T Consensus 89 pde~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~--v-~~e~~~~Rl~~R~~----~~~--R 159 (217)
T 3umf_A 89 PLEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFD--V-SEEVMRKRLLKRAE----TSN--R 159 (217)
T ss_dssp CHHHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEE--C-CHHHHHHHHSCC------------
T ss_pred CHHHHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHhCCccCEEEecc--C-CHHHHHHHHhcccc----cCC--C
Confidence 12222222111112234567999987666666555554421122344544 5 46777788765532 111 2
Q ss_pred hHHHHHHHHHHHHhhhcccccCC
Q 004941 464 FEAGLQDFKNRLANYEKVYEPVD 486 (722)
Q Consensus 464 ~e~a~~df~~Ri~~y~~~yEpl~ 486 (722)
.++-.+-+.+|++.|.+.-+|+-
T Consensus 160 ~DD~~e~i~~Rl~~Y~~~t~pl~ 182 (217)
T 3umf_A 160 VDDNEETIVKRFRTFNELTKPVI 182 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 35556678899999988777764
No 72
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.74 E-value=2.1e-08 Score=97.23 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=65.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC-----CCCCCC---CCHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-----ADFFRA---DNPEGMEARNEVAAL 390 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~-----~~~~~~---~~~~~~~~~~~va~~ 390 (722)
++.+|+++|.|||||||+|+.|++++++. +++.|++-+.....+.. ..++.. .... ....++..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~---~~~~~~~~ 74 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFK-----KLSTGDILRDHVARGTPLGERVRPIMERGDLVPDD---LILELIRE 74 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCE-----EECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHH---HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCe-----EecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHH---HHHHHHHH
Confidence 46789999999999999999999998755 77776553322100000 000000 0000 00111111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCce-EEEEEEEeCCHHHHHHHHHHhh
Q 004941 391 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKI 452 (722)
Q Consensus 391 ~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~-viflE~~c~d~~~i~~ri~~r~ 452 (722)
.+ ..| +|+|+.......+..+..+ .+.+.. -.++.+.| +++++.+|+..|.
T Consensus 75 -------~l-~~~--~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~-~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 75 -------EL-AER--VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEV-PEEELVRRILRRA 127 (186)
T ss_dssp -------HC-CSE--EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEEC-CHHHHHHHHHHHH
T ss_pred -------Hh-cCC--EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeC-CHHHHHHHHHhcc
Confidence 12 233 9999988777776666654 444432 23444556 4677788887664
No 73
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.73 E-value=9.1e-08 Score=95.79 Aligned_cols=119 Identities=19% Similarity=0.223 Sum_probs=64.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH-hhcCCCC----CCCCCC---CCHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL-KHGVNQS----ADFFRA---DNPEGMEARNEVAAL 390 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~-~~g~~~~----~~~~~~---~~~~~~~~~~~va~~ 390 (722)
++++|+|+|.|||||||+|+.|+++|++. +++.|++-+. ..+.... ..++.. ... +....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~-------~~~~~ 70 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAA-----HLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD-------DIMVN 70 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCH-------HHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCce-----EEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCH-------HHHHH
Confidence 45789999999999999999999998754 7888666332 1110000 000000 001 01111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCc---eEEEEEEEeCCHHHHHHHHHHhh
Q 004941 391 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNC---KIIFLETICNDRDIIERNIRLKI 452 (722)
Q Consensus 391 ~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~---~viflE~~c~d~~~i~~ri~~r~ 452 (722)
++.+.+.-....|..+|+|+.......++.+..+ ...+. .++||+ | +++++.+|+..|.
T Consensus 71 ~l~~~l~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~--~-~~e~~~~R~~~r~ 133 (220)
T 1aky_A 71 MIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELK--V-DDELLVARITGRL 133 (220)
T ss_dssp HHHHHHHHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEE--C-CHHHHHHHHHTEE
T ss_pred HHHHHHHhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEE--C-CHHHHHHHHhCCC
Confidence 1111111001235678999855566666666554 33232 245554 5 5777778887653
No 74
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.73 E-value=1e-08 Score=102.16 Aligned_cols=161 Identities=14% Similarity=0.174 Sum_probs=86.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC-----CCCCCCC---CHHHHHHHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-----ADFFRAD---NPEGMEARNEVAALAME 393 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~-----~~~~~~~---~~~~~~~~~~va~~~l~ 393 (722)
.|+|+|.|||||||+|+.|++++++. +++.|++-+........ ..++... ..+ ....+....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~l~ 73 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP-----HISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE---VTIGIVKERLG 73 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHH---HHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHh
Confidence 58899999999999999999987765 77776654432111100 0000000 111 11111111111
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhc-----------C-CCCC
Q 004941 394 DMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQ-----------S-PDYA 459 (722)
Q Consensus 394 d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~v-iflE~~c~d~~~i~~ri~~r~~~-----------~-pd~~ 459 (722)
. ...|..+|+|+.......+..+.+. ...+..+ .+|.+.|+ ++++.+|+..|... . |...
T Consensus 74 ----~-~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~ 147 (216)
T 3dl0_A 74 ----K-DDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVD-KDVLMERLTGRRICSVCGTTYHLVFNPPKTP 147 (216)
T ss_dssp ----S-GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECC-GGGHHHHHHTEEEETTTCCEEETTTBCCSST
T ss_pred ----c-ccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHCCCcCCccCCccccccCCCccc
Confidence 1 1237889999987888777777765 4344332 34445565 57777777766210 0 0000
Q ss_pred CC---------CChHHHHHHHHHHHHhhhcccccCCCC----CeEEEeec
Q 004941 460 EE---------PDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 496 (722)
Q Consensus 460 ~~---------~d~e~a~~df~~Ri~~y~~~yEpl~e~----~yik~i~~ 496 (722)
+. -..++-.+.+.+|+..|.+..+|+.+- ..+..||.
T Consensus 148 ~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~ 197 (216)
T 3dl0_A 148 GICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNG 197 (216)
T ss_dssp TBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 00 001223456778888888777776542 23445554
No 75
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.71 E-value=1.8e-08 Score=100.40 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=87.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHH-------HHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-------EVAALAMED 394 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~-------~va~~~l~d 394 (722)
.|+++|.|||||||+|+.|++.+++. +++.|++-+.....+.. ......+.+. .+....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~-- 68 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIP-----HISTGDMFRAAIKNGTE------LGLKAKSFMDQGNLVPDEVTIGIV-- 68 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHHTTCH------HHHHHHHHHHHTCCCCHHHHHHHH--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EeeHHHHHHHHHhcCCH------HHHHHHHHHHCCCCCCHHHHHHHH--
Confidence 58899999999999999999998765 67776553322111100 0000000000 1111111
Q ss_pred HHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhh-----------cC-CCC
Q 004941 395 MISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQ-----------QS-PDY 458 (722)
Q Consensus 395 ~~~~l~--~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~v-iflE~~c~d~~~i~~ri~~r~~-----------~~-pd~ 458 (722)
...+. ..|..+|+|+.......+..+.+. .+.+..+ .+|.+.| +++++.+|+..|.. .. |..
T Consensus 69 -~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~-~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~ 146 (216)
T 3fb4_A 69 -HERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKV-EQEELMKRLTGRWICKTCGATYHTIFNPPAV 146 (216)
T ss_dssp -HHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHHHHHHSEEEETTTCCEEETTTBCCSS
T ss_pred -HHHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHHcCCCCCccCCccccccCCCCc
Confidence 11222 237789999987888777777765 3334322 2334445 46788888877621 00 100
Q ss_pred CC----------CCChHHHHHHHHHHHHhhhcccccCCCC----CeEEEeec
Q 004941 459 AE----------EPDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 496 (722)
Q Consensus 459 ~~----------~~d~e~a~~df~~Ri~~y~~~yEpl~e~----~yik~i~~ 496 (722)
.+ . ..++..+.+.+|+..|.+..+|+.+- ..+..||.
T Consensus 147 ~~~~~~~~~~l~~-r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~ 197 (216)
T 3fb4_A 147 EGICDKDGGELYQ-RIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDG 197 (216)
T ss_dssp TTBCTTTCCBEEC-CGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccccccCcccc-CCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEEC
Confidence 00 0 12344567788888888777776532 23445554
No 76
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.69 E-value=1.6e-07 Score=89.22 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=30.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
+|+++|.|||||||+|+.|++.+++. +++.|.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~-----~i~~d~~~~ 37 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYP-----IIKGSSFEL 37 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCC-----EEECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe-----eecCccccc
Confidence 79999999999999999999998866 677776644
No 77
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.69 E-value=3.9e-08 Score=98.62 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=65.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCC-----CCCCC---CCHHHHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-----DFFRA---DNPEGMEARNEVAALA 391 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~-----~~~~~---~~~~~~~~~~~va~~~ 391 (722)
.+.|+++|.|||||||+|+.|+++|++. +++.|++-+......... .++.. ...+ ...+++...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~---~~~~~i~~~ 76 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLA-----HLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDE---IVLGLVKEK 76 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHH---HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCce-----EEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHH---HHHHHHHHH
Confidence 4679999999999999999999998755 777766543221111000 00000 0010 111122111
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCc---eEEEEEEEeCCHHHHHHHHHHhh
Q 004941 392 MEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNC---KIIFLETICNDRDIIERNIRLKI 452 (722)
Q Consensus 392 l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~---~viflE~~c~d~~~i~~ri~~r~ 452 (722)
+. - ...|..+|+|+...+....+.+.++ ...+. .++||+ | +++++.+|+..|.
T Consensus 77 l~----~-~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~--~-~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 77 FD----L-GVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFE--I-DDSEIIERISGRC 133 (217)
T ss_dssp HH----T-TTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEE--C-CHHHHHHHHHTEE
T ss_pred Hh----c-cccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEE--C-CHHHHHHHHHcCC
Confidence 11 0 1247789999866666666655543 33332 345554 5 5778888887663
No 78
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.67 E-value=5.3e-08 Score=99.75 Aligned_cols=161 Identities=13% Similarity=0.129 Sum_probs=92.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHH-------HHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAAL 390 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~-------~~va~~ 390 (722)
.+|++|+|+|.|||||||+|+.|+++++.. +++.|+.-|.....+.. ......+.+ .++...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~-----~is~~~~~r~~~~~~~~------~g~~i~~~~~~g~~~~~~~~~~ 95 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYC-----HLSTGDLLREAAEKKTE------LGLKIKNIINEGKLVDDQMVLS 95 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHTTSSSH------HHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCe-----EEecHHHHHHHHhccch------HHHHHHHHHhcCCCCcHHHHHH
Confidence 368899999999999999999999988655 77776654422111100 000000000 001111
Q ss_pred HHHHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhc------------
Q 004941 391 AMEDMISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQ------------ 454 (722)
Q Consensus 391 ~l~d~~~~l~--~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~v-iflE~~c~d~~~i~~ri~~r~~~------------ 454 (722)
. +...+. ..+..+|+|....+....+.+.++ ...+..+ .++.+.| +++++.+|+..|...
T Consensus 96 ~---~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~-p~e~~~~Rl~~R~~~~~~g~~y~~~~~ 171 (243)
T 3tlx_A 96 L---VDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNV-PDEVLVNRISGRLIHKPSGRIYHKIFN 171 (243)
T ss_dssp H---HHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHHHTEEEETTTTEEEETTTB
T ss_pred H---HHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeC-CHHHHHHHHHcCCCCcccCcccccccC
Confidence 1 112222 237789999976677776766665 3333221 2333455 468888888877421
Q ss_pred ------------CCCCCCCCChHHHHHHHHHHHHhhhcccccCCCC----CeEEEeec
Q 004941 455 ------------SPDYAEEPDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 496 (722)
Q Consensus 455 ------------~pd~~~~~d~e~a~~df~~Ri~~y~~~yEpl~e~----~yik~i~~ 496 (722)
.+... ..++-.+.+.+|+..|.+..+|+.+- ..+..||.
T Consensus 172 pp~~~~~~~~~~~~l~~---r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~ 226 (243)
T 3tlx_A 172 PPKVPFRDDVTNEPLIQ---REDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDA 226 (243)
T ss_dssp CCSSTTBCTTTCCBCBC---CGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEET
T ss_pred CCcccCccccccccccC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEC
Confidence 01111 22455677899999998887776542 34455554
No 79
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.67 E-value=4.3e-08 Score=94.89 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=34.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+.+|+++|.|||||||+|+.|+++|+..|++..+++.|++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~ 42 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 42 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHH
Confidence 4689999999999999999999999877766778887765
No 80
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.64 E-value=4.5e-08 Score=93.28 Aligned_cols=134 Identities=15% Similarity=0.237 Sum_probs=72.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 401 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~~ 401 (722)
.|+++|.|||||||+|+.|+++|++. +++.|++.+...+... ..++...++..++... . .++..|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~---~----~~l~~l~~ 68 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIP-----FYDVDEEVQKREGLSI-PQIFEKKGEAYFRKLE---F----EVLKDLSE 68 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCH-HHHHHHSCHHHHHHHH---H----HHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC-----EEECcHHHHHHcCCCH-HHHHHHhChHHHHHHH---H----HHHHHHhc
Confidence 68999999999999999999998765 7888888665443111 1112222333332221 1 12223444
Q ss_pred CCeEEEEeC--CCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhh
Q 004941 402 GGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 478 (722)
Q Consensus 402 ~G~vVIvDA--tn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri~~y 478 (722)
.+..||.|. .......++.+. +.+ .++||+ | +++++.+|+..|. .+|.+.+ ..+.+.+.|.+|.+.|
T Consensus 69 ~~~~Vi~~g~~~~~~~~~~~~l~---~~~-~~i~l~--~-~~e~~~~R~~~r~-~r~~~~~--~~~~i~~~~~~~~~~~ 137 (168)
T 2pt5_A 69 KENVVISTGGGLGANEEALNFMK---SRG-TTVFID--I-PFEVFLERCKDSK-ERPLLKR--PLDEIKNLFEERRKIY 137 (168)
T ss_dssp SSSEEEECCHHHHTCHHHHHHHH---TTS-EEEEEE--C-CHHHHHHHCBCTT-CCBGGGS--CGGGTHHHHHHHHHHH
T ss_pred cCCeEEECCCCEeCCHHHHHHHH---cCC-EEEEEE--C-CHHHHHHHHhCCC-CCCCCcc--hHHHHHHHHHHHHHHH
Confidence 566666543 123344444332 222 456665 4 5777777776543 2343321 1344555565555544
No 81
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.58 E-value=6.1e-08 Score=97.65 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=83.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhh-cCCC---C-CCCCCC---CCHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH-GVNQ---S-ADFFRA---DNPEGMEARNEVAAL 390 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~-g~~~---~-~~~~~~---~~~~~~~~~~~va~~ 390 (722)
++.+|+++|.|||||||+|+.|++++++. +++.|++-+... +... . ..++.. ...+. ...++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~---~~~~~~- 76 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELK-----HLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDV---MTRLAL- 76 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSE-----EEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHH---HHHHHH-
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCe-----EEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHH---HHHHHH-
Confidence 45789999999999999999999988755 677766433211 1000 0 001100 01110 011111
Q ss_pred HHHHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhc---C-----------
Q 004941 391 AMEDMISWMHE-GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ---S----------- 455 (722)
Q Consensus 391 ~l~d~~~~l~~-~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~---~----------- 455 (722)
+.+.+ .+..+|+|....+....+.+..+...+ .++||+ | +.+++.+|+..|... .
T Consensus 77 ------~~l~~~~~~~~vid~~~~~~~~~~~l~~~~~~~-~vi~L~--~-~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~ 146 (227)
T 1zd8_A 77 ------HELKNLTQYSWLLDGFPRTLPQAEALDRAYQID-TVINLN--V-PFEVIKQRLTARWIHPASGRVYNIEFNPPK 146 (227)
T ss_dssp ------HHHHTCTTSCEEEESCCCSHHHHHHHHTTSCCC-EEEEEE--C-CHHHHHHHHTCEEEETTTTEEEETTTBCCS
T ss_pred ------HHHhcccCCCEEEeCCCCCHHHHHHHHHhcCCC-EEEEEE--C-CHHHHHHHHHcCcCCCccCCccccccCCCC
Confidence 11222 356788999777765544444332223 355655 4 567777777654210 0
Q ss_pred ----------CCCCCCCChHHHHHHHHHHHHhhhcccccCCCC----CeEEEeec
Q 004941 456 ----------PDYAEEPDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 496 (722)
Q Consensus 456 ----------pd~~~~~d~e~a~~df~~Ri~~y~~~yEpl~e~----~yik~i~~ 496 (722)
+... ..++..+.+.+|+..|.+..+|+-+- ..+..||.
T Consensus 147 ~~~~~~~~~~~l~~---r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~ 198 (227)
T 1zd8_A 147 TVGIDDLTGEPLIQ---REDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSG 198 (227)
T ss_dssp STTBCTTTCCBCBC---CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred cccccccccccccC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeC
Confidence 1111 12345677888888887776654321 23455665
No 82
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.58 E-value=1.7e-07 Score=94.46 Aligned_cols=117 Identities=14% Similarity=0.121 Sum_probs=64.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-----ADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~-----~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
+|+++|.|||||||+|+.|+++++. .+++.|++-+.....+.. ..++........+....++...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~-----~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~--- 73 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL-----AHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLE--- 73 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC-----EEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----eEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHh---
Confidence 6999999999999999999999864 378887763322100000 000000000000111222222222
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCc---eEEEEEEEeCCHHHHHHHHHHhh
Q 004941 397 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNC---KIIFLETICNDRDIIERNIRLKI 452 (722)
Q Consensus 397 ~~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~---~viflE~~c~d~~~i~~ri~~r~ 452 (722)
-. . |..||+|+.......++.+.++ ...+. .++|+. | +++++.+|+..|.
T Consensus 74 -~~-~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~--~-~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 74 -SK-G-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEIL--L-PREVAKNRIMGRR 127 (223)
T ss_dssp -HH-C-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEE--C-CHHHHHHHHHTBC
T ss_pred -cc-c-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEE--C-CHHHHHHHHHccc
Confidence 01 1 7899999866666666666554 33332 344444 5 5778888887664
No 83
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.57 E-value=5e-08 Score=94.09 Aligned_cols=133 Identities=17% Similarity=0.279 Sum_probs=73.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 401 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~l~~ 401 (722)
.|+++|.|||||||+|+.|++.|++. ++|.|++++...+.... .++....+..++..+ ..++..+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~-----~~d~d~~~~~~~g~~~~-~~~~~~g~~~~~~~~-------~~~~~~l~~ 72 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV-----FLDSDFLIEQKFNQKVS-EIFEQKRENFFREQE-------QKMADFFSS 72 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHHHHTSCHH-HHHHHHCHHHHHHHH-------HHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcccHHHHHHcCCCHH-HHHHHcCHHHHHHHH-------HHHHHHHHc
Confidence 58999999999999999999998765 78888886654432211 122222232232221 112223433
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh-hcCCCCCCCCChHHHHHHHHHHHHhhh
Q 004941 402 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI-QQSPDYAEEPDFEAGLQDFKNRLANYE 479 (722)
Q Consensus 402 ~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~-~~~pd~~~~~d~e~a~~df~~Ri~~y~ 479 (722)
... +|++........+. +.+.+ .++||. | +.+++.+|+..+. ..+|+.. +.+...+.|.+|.+.|.
T Consensus 73 ~~~-~vi~~g~~~~~~~~----l~~~~-~~i~l~--~-~~e~~~~R~~~r~~~~r~~~~---~~~~i~~~~~~r~~~y~ 139 (175)
T 1via_A 73 CEK-ACIATGGGFVNVSN----LEKAG-FCIYLK--A-DFEYLKKRLDKDEISKRPLFY---DEIKAKKLYNERLSKYE 139 (175)
T ss_dssp CCS-EEEECCTTGGGSTT----GGGGC-EEEEEE--C-CHHHHTTCCCGGGTTTSCTTC---CHHHHHHHHHHHHHHHH
T ss_pred cCC-EEEECCCCEehhhH----HhcCC-EEEEEe--C-CHHHHHHHHhcccCCCCCCcc---cHHHHHHHHHHHHHHHH
Confidence 333 44443322221122 32323 466665 4 5777777776552 2345443 24556666777776664
No 84
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.56 E-value=1.1e-07 Score=90.75 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=32.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH 364 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~ 364 (722)
+|+++|.|||||||+|+.|+++|++. +++.|++.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~d~~~~~~~ 41 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYE-----FVDTDIFMQHTS 41 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc-----EEcccHHHHHHh
Confidence 69999999999999999999998765 788888866543
No 85
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.54 E-value=2.6e-07 Score=105.76 Aligned_cols=119 Identities=17% Similarity=0.179 Sum_probs=69.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcC-CceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 396 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g-~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~ 396 (722)
.++.+|+|+|++|||||||++.|++.|...+ ....++|.|++++.. .....|........++.+..++..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l---~~~l~f~~~~r~~~~r~i~~v~q~------ 437 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHL---SSELGFSKAHRDVNVRRIGFVASE------ 437 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHT---TSSCCCSHHHHHHHHHHHHHHHHH------
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhh---ccccCCCHHHHHHHHHHHHHHHHH------
Confidence 3567899999999999999999999987543 356678998886532 222233222222223333333322
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHH
Q 004941 397 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 449 (722)
Q Consensus 397 ~~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~viflE~~c~d~~~i~~ri~ 449 (722)
+...+.++|.....+....|+.++++ .+.+ .+++|.+.|+ .+++.+|++
T Consensus 438 --l~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~-~e~~~~R~~ 487 (552)
T 3cr8_A 438 --ITKNRGIAICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATP-IETCESRDR 487 (552)
T ss_dssp --HHHTTCEEEECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC-----------
T ss_pred --HHhcCCEEEEecCCccHHHHHHHHHHHHHcC-CEEEEEEcCC-HHHHHHhcc
Confidence 33467888887766667788888887 4445 4445554454 566777653
No 86
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.51 E-value=1.5e-07 Score=97.39 Aligned_cols=138 Identities=15% Similarity=0.162 Sum_probs=74.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhh-cCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH-GVNQSADFFRADNPEGMEARNE-VAALAMEDMISW 398 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~-g~~~~~~~~~~~~~~~~~~~~~-va~~~l~d~~~~ 398 (722)
..|+++|.|||||||+++.|++.|++. ++|.|++.+... +... ..+|....+..++.++. ++..++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~-----~~d~d~~~~~~~~g~~i-~~i~~~~ge~~fr~~e~~~l~~l~~----- 117 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYT-----FFDCDTLIEQAMKGTSV-AEIFEHFGESVFREKETEALKKLSL----- 117 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHHHSTTSCH-HHHHHHHCHHHHHHHHHHHHHHHHH-----
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCc-----EEeCcHHHHHHhcCccH-HHHHHHhCcHHHHHHHHHHHHHHHh-----
Confidence 479999999999999999999999876 888888766444 2111 22343344555554432 2222222
Q ss_pred HhcCCeEEEEeCCC--CCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh-hhcCCCCCCCCC--------hHHH
Q 004941 399 MHEGGQVGIFDATN--SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK-IQQSPDYAEEPD--------FEAG 467 (722)
Q Consensus 399 l~~~G~vVIvDAtn--~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r-~~~~pd~~~~~d--------~e~a 467 (722)
.....||.+... ...+.+..+ +.+ .++||. .+.+++.+|+..+ ...+|...+. + .+..
T Consensus 118 --~~~~~Via~GgG~v~~~~~~~~l----~~~-~vV~L~---a~~e~l~~Rl~~~~~~~Rpl~~~~-~~~d~~~~~~~~l 186 (250)
T 3nwj_A 118 --MYHQVVVSTGGGAVIRPINWKYM----HKG-ISIWLD---VPLEALAHRIAAVGTGSRPLLHDD-ESGDTYTAALNRL 186 (250)
T ss_dssp --HCSSEEEECCGGGGGSHHHHHHH----TTS-EEEEEE---CCHHHHHHHHHC-----------------CHHHHHHHH
T ss_pred --hcCCcEEecCCCeecCHHHHHHH----hCC-cEEEEE---CCHHHHHHHHhhcCCCCCCcccCC-CcccchhhHHHHH
Confidence 113445543321 122333322 233 567777 3577888888642 2346766542 2 2446
Q ss_pred HHHHHHHHHhhhc
Q 004941 468 LQDFKNRLANYEK 480 (722)
Q Consensus 468 ~~df~~Ri~~y~~ 480 (722)
.+.|.+|.+.|+.
T Consensus 187 ~~l~~eR~~lY~~ 199 (250)
T 3nwj_A 187 STIWDARGEAYTK 199 (250)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 6777778877654
No 87
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.51 E-value=3.7e-07 Score=88.30 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=34.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.+|+++|.|||||||+|+.|+++|+..|+...+++.|++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 479999999999999999999999977888888887765
No 88
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.45 E-value=2.1e-06 Score=86.08 Aligned_cols=146 Identities=18% Similarity=0.244 Sum_probs=86.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHH----------HHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN----------EVAAL 390 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~----------~va~~ 390 (722)
++|+|.|.|||||+|.|+.|+++++.. .+++|+.-|..... .++.+..... ++...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~-----~istGdllR~~i~~---------~t~lg~~~~~~~~~G~lvpd~iv~~ 66 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFV-----HISTGDILREAVQK---------GTPLGKKAKEYMERGELVPDDLIIA 66 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHH---------TCHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCe-----EEcHHHHHHHHHHh---------cChhhhhHHHHHhcCCcCCHHHHHH
Confidence 368999999999999999999998776 67777653322110 1111111111 11111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhcC-----------CC
Q 004941 391 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQS-----------PD 457 (722)
Q Consensus 391 ~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~~~v-iflE~~c~d~~~i~~ri~~r~~~~-----------pd 457 (722)
++ ...+.+ ...+|+|.-.-+..+.+.+..+ .+.+..+ .+|+..|+ ++++.+|+..|.... |.
T Consensus 67 lv---~~~l~~-~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~-~e~l~~Rl~~R~~~~~~g~~y~~~~~pp 141 (206)
T 3sr0_A 67 LI---EEVFPK-HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVP-DEVVIERLSGRRINPETGEVYHVKYNPP 141 (206)
T ss_dssp HH---HHHCCS-SSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETTTBCC
T ss_pred HH---HHhhcc-CCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCC-HHHHHHHHhCCccccCCCceeeeeccCC
Confidence 11 122333 3458999988888887777665 4444432 34445565 566666777663210 00
Q ss_pred CC----CCCChHHHHHHHHHHHHhhhcccccCC
Q 004941 458 YA----EEPDFEAGLQDFKNRLANYEKVYEPVD 486 (722)
Q Consensus 458 ~~----~~~d~e~a~~df~~Ri~~y~~~yEpl~ 486 (722)
-. .. ..++-.+-+.+|++.|.+..+|+-
T Consensus 142 ~~g~~l~~-r~DD~~e~i~~Rl~~Y~~~t~pl~ 173 (206)
T 3sr0_A 142 PPGVKVIQ-REDDKPEVIKKRLEVYREQTAPLI 173 (206)
T ss_dssp CTTCCCBC-CGGGSHHHHHHHHHHHHHHTTHHH
T ss_pred CCCceecc-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 01 235556778899999988888874
No 89
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.44 E-value=2.5e-07 Score=93.71 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=31.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
..++.|+|+|.|||||||+|+.|+++|++. +++.|++
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~l 50 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVC-----HLATGDM 50 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCc-----eecHHHH
Confidence 345689999999999999999999998754 7777665
No 90
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.43 E-value=2.7e-06 Score=83.50 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=27.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 348 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g 348 (722)
++.+|+++|.|||||||+|+.|+++|+..|
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 357899999999999999999999998766
No 91
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.42 E-value=3.1e-07 Score=87.76 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=33.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG 365 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g 365 (722)
.|+++|.|||||||+|+.|+++|++. ++|.|++.+...+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~-----~id~D~~~~~~~g 47 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLE-----VLDTDMIISERVG 47 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHhC
Confidence 79999999999999999999999876 7888887665443
No 92
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.40 E-value=5.7e-07 Score=89.65 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=29.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
.|+++|.|||||||+|+.|+++++.. +++.|++-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~-----~i~~d~~~r 36 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIP-----QISTGDMLR 36 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCC-----EEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe-----EEeHHHHHH
Confidence 48999999999999999999988654 678766533
No 93
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.38 E-value=6.1e-06 Score=81.31 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=33.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 355 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~ 355 (722)
++.+|+++|.|||||||+|+.|+++|+..+++++.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 4679999999999999999999999998888887664
No 94
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.36 E-value=1.7e-06 Score=89.19 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=29.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.+|+++|.|||||||+|+.|++.+++. +++.|++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~-----~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWP-----VVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCC-----EEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCe-----EEeccHH
Confidence 379999999999999999999998765 7777775
No 95
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.36 E-value=2.9e-06 Score=82.52 Aligned_cols=112 Identities=12% Similarity=0.090 Sum_probs=64.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCC-CH----HHHHHHHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRAD-NP----EGMEARNEVAALAMEDM 395 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~-~~----~~~~~~~~va~~~l~d~ 395 (722)
.+|+++|.|||||||+++.|++.+.. ...++.+++++... .++..+. .. ..++.+...+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g----~~~i~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~----- 68 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN----SAYIEGDIINHMVV-----GGYRPPWESDELLALTWKNITDLTVN----- 68 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS----EEEEEHHHHHTTCC-----TTCCCGGGCHHHHHHHHHHHHHHHHH-----
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC----eEEEcccchhhhhc-----cccccCccchhHHHHHHHHHHHHHHH-----
Confidence 47999999999999999999875431 24677777754221 1122111 11 112222222222
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHHH---cCCceEEEEEEEeCCHHHHHHHHHHh
Q 004941 396 ISWMHEGGQVGIFDATNSSRKRRNMLMKMA---EGNCKIIFLETICNDRDIIERNIRLK 451 (722)
Q Consensus 396 ~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~---~~~~~viflE~~c~d~~~i~~ri~~r 451 (722)
+...|..+|+|.+. ....++.++++. ..+.++.++.+.| +.+.+.+|++.|
T Consensus 69 ---~~~~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~-~~e~l~~R~~~r 122 (189)
T 2bdt_A 69 ---FLLAQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWT-NREELLRRDALR 122 (189)
T ss_dssp ---HHHTTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEEC-CHHHHHHHTTTS
T ss_pred ---HHhcCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeC-CHHHHHHHHHhc
Confidence 22357789999864 455555555552 2233555555455 577888887655
No 96
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.34 E-value=5.9e-07 Score=89.98 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=30.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
++.+|+++|.|||||||+|+.|+++|++. .++.|++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~-----~i~~d~~ 39 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLA-----HISAGDL 39 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCE-----ECCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCc-----eecHHHH
Confidence 45689999999999999999999998865 5666554
No 97
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.33 E-value=4.4e-07 Score=86.74 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=32.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 363 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~ 363 (722)
+.+|+++|.|||||||+++.|+..+++. +++.|++.+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~-----~id~d~~~~~~ 42 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNME-----FYDSDQEIEKR 42 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCE-----EEEHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCC-----EEeccHHHHHH
Confidence 3479999999999999999999987753 78888775533
No 98
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.33 E-value=2.6e-07 Score=89.31 Aligned_cols=40 Identities=30% Similarity=0.307 Sum_probs=32.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 363 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~ 363 (722)
.+.+|+++|+|||||||+|+.|++++++. +++.|++.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~-----~~~~d~~~~~~ 49 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLK-----YINVGDLAREE 49 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCe-----EEEHHHHHhhc
Confidence 34578999999999999999999998755 78888775533
No 99
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.31 E-value=1.4e-05 Score=81.14 Aligned_cols=33 Identities=21% Similarity=0.110 Sum_probs=29.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceE
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 352 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~ 352 (722)
.+.+|++.|.|||||||+++.|+++|.. +..+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 5689999999999999999999999987 66553
No 100
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.21 E-value=2.7e-05 Score=75.15 Aligned_cols=29 Identities=38% Similarity=0.454 Sum_probs=25.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHD 350 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~ 350 (722)
+|+++|.|||||||+|+.|+++|...|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~ 30 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYF 30 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 79999999999999999999998544443
No 101
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.18 E-value=2.3e-06 Score=84.65 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.+.+|+++|.|||||||+++.|++.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 466899999999999999999999874
No 102
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.18 E-value=3.1e-06 Score=82.42 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=31.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH-HhhcCCceEEEechhhHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY-LRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~-L~~~g~~t~v~~~ddyRr 361 (722)
++..|+++|.|||||||+|+.|++. +++. ++|.|++-+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~-----~id~d~~~~ 47 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQ-----HLEVGKLVK 47 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEE-----EEEHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCE-----EeeHHHHHH
Confidence 3558999999999999999999998 5655 788887744
No 103
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.17 E-value=9.6e-07 Score=100.05 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=53.9
Q ss_pred cccCCCCccccchhhhhhhccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhh-cC-CceEEEechh
Q 004941 291 ETKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LG-HDTKHFNVGK 358 (722)
Q Consensus 291 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~-~g-~~t~v~~~dd 358 (722)
......|++......+.+......+..+.+.+|||+|+|||||||||++|+++|++ .| ..+.++|.|+
T Consensus 366 r~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 366 RVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp HHTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred hCCCCCCccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 35567788877777787777766655667789999999999999999999999997 53 5566777654
No 104
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.15 E-value=4.6e-06 Score=85.07 Aligned_cols=148 Identities=17% Similarity=0.242 Sum_probs=79.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHH----------HHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR----------NEV 387 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~----------~~v 387 (722)
+..+-+-+.|.|||||||+|+.|+++++.. ++++|+.-|.....+ ++.+.... .++
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~~~g~~-----~is~gdllR~~~~~~---------t~lG~~i~~~~~~G~lvpdei 71 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKEKFGIP-----QISTGDMLRAAVKAG---------TPLGVEAKTYMDEGKLVPDSL 71 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHHHHTCC-----EECHHHHHHHHHHTT---------CHHHHHHHHHHTTTCCCCHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHHHhCCC-----eeechHHHHHhccCC---------ChHHHHHHHHHhhccccccHH
Confidence 345567899999999999999999998766 777766533221110 11110000 011
Q ss_pred HHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhc-----------
Q 004941 388 AALAMEDMISWMHE--GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ----------- 454 (722)
Q Consensus 388 a~~~l~d~~~~l~~--~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~----------- 454 (722)
...++. +.|.+ .+..+|+|...-+..+.+.+.+....--.|++|+ |+ ++++.+|+..|...
T Consensus 72 ~~~ll~---~~l~~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ld--vp-~e~l~~Rl~~R~~~~~~G~~Yh~~~ 145 (230)
T 3gmt_A 72 IIGLVK---ERLKEADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEID--VP-FSEIIERMSGRRTHPASGRTYHVKF 145 (230)
T ss_dssp HHHHHH---HHHHSGGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEEC--CC-HHHHHHHHHTEEEETTTTEEEETTT
T ss_pred HHHHHH---HHHhCcccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEe--CC-HHHHHHHHHcCCcccccCCcccccC
Confidence 111111 12221 2345789986555544444432211111345544 54 67788888877421
Q ss_pred CCC-CCC----------CCChHHHHHHHHHHHHhhhcccccCC
Q 004941 455 SPD-YAE----------EPDFEAGLQDFKNRLANYEKVYEPVD 486 (722)
Q Consensus 455 ~pd-~~~----------~~d~e~a~~df~~Ri~~y~~~yEpl~ 486 (722)
+|. ..+ . ..++-.+-+.+|++.|.+.-+|+-
T Consensus 146 ~pp~~~~~~d~~g~~L~~-R~DD~~e~i~~Rl~~y~~~t~pl~ 187 (230)
T 3gmt_A 146 NPPKVEGKDDVTGEPLVQ-RDDDKEETVKKRLDVYEAQTKPLI 187 (230)
T ss_dssp BCCSSTTBCTTTCCBCBC-CGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCcCCCccCcccc-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 010 000 1 345567788999999988777764
No 105
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.11 E-value=6.7e-05 Score=72.73 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=26.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceE
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 352 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~ 352 (722)
++|+++|.|||||||+|+.|+++|...|+...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 37999999999999999999999966666553
No 106
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.08 E-value=1.3e-05 Score=82.13 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=36.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhc-----CCceEEEechhhH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-----GHDTKHFNVGKYR 360 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~-----g~~t~v~~~ddyR 360 (722)
.++++|.++|.|||||||+|+.|++.|++. +..+.+++.|++-
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 467899999999999999999999998864 5567789998873
No 107
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.06 E-value=2.1e-05 Score=79.73 Aligned_cols=43 Identities=14% Similarity=0.131 Sum_probs=35.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcC
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGV 366 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~ 366 (722)
.+++|.+.|.+||||||+|+.|+++|++. ++|.|.+++.....
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~-----~~d~~~~~~~a~~~ 55 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIH-----FYDDDILKLASEKS 55 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCE-----EECHHHHHHHHHCC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCc-----EEcHHHHHHHHHHc
Confidence 46799999999999999999999999876 67766666654433
No 108
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.06 E-value=9.5e-06 Score=80.79 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=31.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
+.+|.+.|.+||||||+|+.|+++|++. ++|.+-||.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~-----~~D~~~~~~ 42 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIP-----LYSKELLDE 42 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCC-----EECHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcC-----EECHHHHHH
Confidence 4589999999999999999999999877 777444444
No 109
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.03 E-value=3.7e-06 Score=82.88 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=33.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 355 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~ 355 (722)
++.+|+++|.|||||||+|+.|+++|+..+++++++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4679999999999999999999999999888887664
No 110
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.03 E-value=5.7e-05 Score=78.96 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=31.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
.++++|+++|.|||||||+|+.|+ .+++ .+++.|++.+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~-----~~id~D~~~~ 110 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGA-----YIIDSDHLGH 110 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTC-----EEEEHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCC-----cEEehhHHHH
Confidence 467899999999999999999999 4554 3788887744
No 111
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.98 E-value=5.6e-05 Score=75.11 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=31.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 362 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~ 362 (722)
++++|+++|.|||||||+|+.|++ ++. .++|.|++-+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~-----~~id~D~~~~~ 40 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGI-----NVIDADIIARQ 40 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTC-----EEEEHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCC-----EEEEccHHHHH
Confidence 468999999999999999999997 543 37888776443
No 112
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.97 E-value=2.7e-05 Score=77.11 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=34.1
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 362 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~ 362 (722)
++...+|.++|.|||||||+|+.|++.++.. ++|.|++-+.
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~~-----vid~D~~~~~ 49 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGAH-----VVNVDRIGHE 49 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCE-----EEECcHHHHH
Confidence 4567899999999999999999999987655 8898888443
No 113
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.96 E-value=0.0005 Score=69.05 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=32.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
++++|++.|.+||||||+++.|+++|...|+++...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 467999999999999999999999999888877655
No 114
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=97.95 E-value=1.5e-05 Score=71.25 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=59.5
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccCCCceE-EEEecCCCCCceeEEEEEecCCCCCcee
Q 004941 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWE-LSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (722)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~-~~l~~~~~~~~leyKf~~~~~~~~~~~~ 105 (722)
.|.++-|..+ + .=+.+.|-.. +.+|+|++..+++|+...++.|. .++++|.- ..||||| + +....
T Consensus 3 ~g~~vtiyY~---~---g~~~vylHyg-~~~g~Wt~~~~v~M~~~~~~gw~~~TI~l~~g-~~~~~~F--~----dG~~~ 68 (104)
T 2laa_A 3 TGNKVTIYYK---K---GFNSPYIHYR-PAGGSWTAAPGVKMQDAEISGYAKITVDIGSA-SQLEAAF--N----DGNNN 68 (104)
T ss_dssp CCCEEEEEEE---C---SSSSCEEEEE-ETTSCCCSSSCEECEEETTTTEEEEEEECTTC-SCEEEEE--E----CSSSC
T ss_pred CCCEEEEEEc---C---CCCcEEEEEc-CCCCCCCcCCccccccccCCCeEEEEEECCCC-CEEEEEE--e----CCCCc
Confidence 4566666666 2 2334444444 77899999999999999999995 99999974 4899999 2 33468
Q ss_pred eccCCCcccccCC
Q 004941 106 VEEGPNRLLTGGA 118 (722)
Q Consensus 106 wE~g~NR~l~~~~ 118 (722)
||++.||-++.+.
T Consensus 69 WDNn~g~Nyt~~~ 81 (104)
T 2laa_A 69 WDSNNTKNYSFST 81 (104)
T ss_dssp EESTTTSCEEECS
T ss_pred CcCCCCccEEecC
Confidence 9999999987654
No 115
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.95 E-value=5.7e-05 Score=81.13 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=31.1
Q ss_pred ccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 312 MLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 312 ~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
|..+...++.+|+++|.+||||||||..|+++++. .++|.|.+
T Consensus 32 m~~~~~~~~~lIvI~GPTgsGKTtLa~~LA~~l~~-----eiIs~Ds~ 74 (339)
T 3a8t_A 32 LRRQRHRKEKLLVLMGATGTGKSRLSIDLAAHFPL-----EVINSDKM 74 (339)
T ss_dssp ------CCCEEEEEECSTTSSHHHHHHHHHTTSCE-----EEEECCSS
T ss_pred cccccccCCceEEEECCCCCCHHHHHHHHHHHCCC-----cEEccccc
Confidence 43333445679999999999999999999988654 47887765
No 116
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.93 E-value=0.00068 Score=68.12 Aligned_cols=30 Identities=33% Similarity=0.360 Sum_probs=28.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCC
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGH 349 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~ 349 (722)
+++|++.|.+||||||+++.|+++|...|+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999998887
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.92 E-value=7.6e-05 Score=72.19 Aligned_cols=119 Identities=12% Similarity=0.108 Sum_probs=62.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 398 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~ 398 (722)
.+.+|+++|.|||||||+++.|+.. .+.....++.|++++.... .....|+.+.........+. +......
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~~~~~-~~~~~~~~~~~~~~~~v~~~-----l~~~~~~ 78 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWGYIKH-GRIDPWLPQSHQQNRMIMQI-----AADVAGR 78 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHHTCCS-SCCCTTSSSHHHHHHHHHHH-----HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhhhhhc-ccccCCccchhhhhHHHHHH-----HHHHHHH
Confidence 3568999999999999999999875 3334557888887553211 11123433322111111111 1111111
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 004941 399 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 451 (722)
Q Consensus 399 l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r 451 (722)
+...|..+++|+.... ..++.+..+ +..+..+...| +.+++.+|+..+
T Consensus 79 ~~~~~~~~~~~~~~~~-~~l~~~~~~---~~~~~~ls~~~-~~~v~~~R~~~r 126 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRP-DWLPAFTAL---ARPLHYIVLRT-TAAEAIERCLDR 126 (191)
T ss_dssp HHHTSCEEEECSCCCT-TTTHHHHTT---CSCEEEEEEEC-CHHHHHHHHHTT
T ss_pred HhccCCeEEEeccCcH-HHHHHHHhc---CCCeEEEEecC-CHHHHHHHHHhc
Confidence 2345778888885432 122222211 22333444445 567777777654
No 118
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.90 E-value=0.00024 Score=72.58 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=31.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCc-eEEE
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD-TKHF 354 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~-t~v~ 354 (722)
++.+|++.|.+||||||+++.|+++|...+++ +..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 46799999999999999999999999988888 4444
No 119
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.85 E-value=4.8e-05 Score=74.43 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=31.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 362 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~ 362 (722)
+|.++|.|||||||+|+.|++.|+.. ++|.|++.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~-----~~d~d~~~~~ 39 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP-----YLSSGLLYRA 39 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc-----eeccchHHHh
Confidence 89999999999999999999998865 7888887664
No 120
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.82 E-value=0.00011 Score=78.70 Aligned_cols=35 Identities=34% Similarity=0.244 Sum_probs=29.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+.+|+++|.+||||||+|+.|++.+++. +++.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~-----iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCE-----LISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEE-----EEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCc-----EEeccch
Confidence 4589999999999999999999997644 7777654
No 121
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.82 E-value=0.00021 Score=70.18 Aligned_cols=36 Identities=25% Similarity=0.130 Sum_probs=29.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 362 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~ 362 (722)
++|.++|.|||||||+++.|+. +++. ++|.|++.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~-----~id~d~~~~~ 38 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVP-----LVDADVVARE 38 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCC-----EEEHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCc-----ccchHHHHHH
Confidence 5799999999999999999987 5544 7888887543
No 122
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.82 E-value=7.6e-05 Score=72.57 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=23.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
+|+++|.|||||||+|+.|+++|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6899999999999999999999875
No 123
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.81 E-value=6e-05 Score=73.42 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=31.9
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
..++.+|.++|.|||||||+|+.|++. ++. ++|.|++-+
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~-----~id~d~~~~ 43 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYP-----VLDLDALAA 43 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCC-----EEEHHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCE-----EEcccHHHH
Confidence 346789999999999999999999986 443 788887644
No 124
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.79 E-value=0.00027 Score=71.06 Aligned_cols=120 Identities=15% Similarity=0.128 Sum_probs=69.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC----------CCCCCCC---C-------
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS----------ADFFRAD---N------- 377 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~----------~~~~~~~---~------- 377 (722)
+.-..|-++|.+||||||+|+.|++ +++. ++|.|.+-+.....+.. ..++.++ +
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~g~~-----vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~ 80 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-RGAS-----LVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRAL 80 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-TTCE-----EEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-CCCc-----EEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHH
Confidence 3445899999999999999999997 6666 88888876654433221 2334322 1
Q ss_pred ----HHHHHHHHHHHH-HHHHHHHHHHhcC-CeEEEEeCCCCCH-HHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHH
Q 004941 378 ----PEGMEARNEVAA-LAMEDMISWMHEG-GQVGIFDATNSSR-KRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 450 (722)
Q Consensus 378 ----~~~~~~~~~va~-~~l~d~~~~l~~~-G~vVIvDAtn~~~-~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~ 450 (722)
++..+.++.+.. .+.+++..++... +..||+|+.-... ..- ..+ .+ .+++|. | ++++..+|+..
T Consensus 81 vF~d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~---~~~--~D-~vi~V~--a-p~e~r~~Rl~~ 151 (210)
T 4i1u_A 81 IFSDEDARRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNW---KAR--CD-RVLVVD--C-PVDTQIARVMQ 151 (210)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHH---HHH--CS-EEEEEE--C-CHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCc---ccc--CC-eEEEEE--C-CHHHHHHHHHh
Confidence 122222222222 2223445555544 4578999976554 321 111 12 355555 5 57777777776
Q ss_pred hh
Q 004941 451 KI 452 (722)
Q Consensus 451 r~ 452 (722)
|.
T Consensus 152 Rd 153 (210)
T 4i1u_A 152 RN 153 (210)
T ss_dssp HH
T ss_pred cC
Confidence 53
No 125
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.76 E-value=0.0001 Score=72.03 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
+.+|.++|.+||||||+++.|+..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999998753
No 126
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.75 E-value=1.4e-05 Score=78.76 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=27.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEE
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 353 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v 353 (722)
+|+++|.+||||||+++.|+++|...|.++.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~ 33 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT 33 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 79999999999999999999999876655443
No 127
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.73 E-value=0.0019 Score=64.33 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=27.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
..|++-|..||||||.++.|+++|. .++++...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 4799999999999999999999996 46665543
No 128
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.73 E-value=0.00021 Score=68.76 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=73.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 398 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~~ 398 (722)
.+-++.|+|.+||||||+++.+.. ...+++.|.+|...... ....+ .....++.....+...+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~-------~~~~~~~d~~~g~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~----- 71 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK-------PTEVISSDFCRGLMSDD-ENDQT---VTGAAFDVLHYIVSKRLQ----- 71 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC-------GGGEEEHHHHHHHHCSS-TTCGG---GHHHHHHHHHHHHHHHHH-----
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc-------CCeEEccHHHHHHhcCc-ccchh---hHHHHHHHHHHHHHHHHh-----
Confidence 356899999999999999998531 22357777666543221 11111 112223333333333333
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCC--ceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 004941 399 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGN--CKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 475 (722)
Q Consensus 399 l~~~G~vVIvDAtn~~~~~R~~~~~l-~~~~--~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a~~df~~Ri 475 (722)
.|..+++|+++.....+++...+ .... .++++++ .+...+..+.+.|.. . .. +++.+....+++
T Consensus 72 ---~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllD---EPt~~Ld~~~~~R~~----~-~~--~~~vi~~~~~~l 138 (171)
T 4gp7_A 72 ---LGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFN---LPEKVCQERNKNRTD----R-QV--EEYVIRKHTQQM 138 (171)
T ss_dssp ---TTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEEC---CCHHHHHHHHHTCSS----C-CC--CHHHHHHHHHHH
T ss_pred ---CCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEe---CCHHHHHHHHhcccC----C-CC--CHHHHHHHHHHh
Confidence 68999999999998766666665 3333 3444444 345566666554432 1 22 455655555555
Q ss_pred Hh
Q 004941 476 AN 477 (722)
Q Consensus 476 ~~ 477 (722)
..
T Consensus 139 ~~ 140 (171)
T 4gp7_A 139 KK 140 (171)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 129
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.72 E-value=0.00031 Score=71.28 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=26.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
+|.+|+++|.|||||||+++.|+++++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 46799999999999999999999998765
No 130
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.71 E-value=0.00055 Score=69.08 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=32.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
.+.+|.++|.|||||||+++.|++.|++. +++.|++.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~-----~~d~d~~~~ 52 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFT-----YLDTGAMYR 52 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCE-----EEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCc-----eecCCCeeE
Confidence 45689999999999999999999988755 788887765
No 131
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.68 E-value=0.00071 Score=66.92 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=31.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
|++|+++|.|||||||+|+.|++.++.. ++|.|++-+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~-----~~~~d~~~~ 39 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMI-----YVDTGAMYR 39 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCE-----EEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCc-----eecCChHHH
Confidence 5689999999999999999999987754 788877644
No 132
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.65 E-value=0.00014 Score=71.65 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=31.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
..+.+|.++|.|||||||+|+.|++.+. ...+++.|++
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 3567899999999999999999997652 3457888876
No 133
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.65 E-value=6.4e-05 Score=73.72 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=29.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 362 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~ 362 (722)
+|.++|.|||||||+++.|++ ++ ..+++.|++.+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g-----~~~i~~d~~~~~ 37 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG-----AYVLDADKLIHS 37 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT-----CEEEEHHHHHHG
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC-----CEEEEccHHHHH
Confidence 689999999999999999998 65 347888887553
No 134
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.64 E-value=0.00038 Score=70.73 Aligned_cols=36 Identities=22% Similarity=0.156 Sum_probs=28.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc----CCceEEE
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL----GHDTKHF 354 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~----g~~t~v~ 354 (722)
++++|++.|.+||||||+++.|+++|... |+++...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 56799999999999999999999999877 8777554
No 135
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.57 E-value=4.4e-05 Score=75.87 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=23.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.+.+|+++|.+||||||+++.|++.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999998764
No 136
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.47 E-value=0.00064 Score=69.36 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=32.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
.|++|+++|.|||||||+|+.|+++|++. +++.|.+.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~-----~~d~g~~~r 45 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGAR-----YLDTGAMYR 45 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC-----cccCCcHHH
Confidence 57899999999999999999999998765 788877654
No 137
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.46 E-value=0.00012 Score=74.16 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=32.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEE
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKH 353 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~-~g~~t~v 353 (722)
.++++|++.|++||||||+++.|+++|.. .|+++.+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 36789999999999999999999999998 8888766
No 138
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.46 E-value=0.00017 Score=70.04 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.+|+++|.+||||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999998765
No 139
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.40 E-value=0.00049 Score=76.52 Aligned_cols=43 Identities=30% Similarity=0.468 Sum_probs=39.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
+|.+|+++|++|+||||++..|+.+|...|.++-+++.|-||-
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 5899999999999999999999999998899999998876643
No 140
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.27 E-value=0.0014 Score=67.09 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=32.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
...+|.++|.+||||||+++.|+++|+.. .++.|.+.|
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~-----~~d~g~i~r 63 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWR-----LLDSGAIYR 63 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCE-----EEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCC-----cCCCCceeh
Confidence 34589999999999999999999998876 677777653
No 141
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.25 E-value=0.00066 Score=66.85 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.7
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~ 345 (722)
||++|.+|+|||||+++|.+.+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 88999999999999999987753
No 142
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.14 E-value=0.0003 Score=69.89 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=31.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
+.+|+++|.|||||||+|+.|++.+++. +++.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~-----~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWH-----LLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC-----cccCcceee
Confidence 4589999999999999999999988765 778887654
No 143
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.09 E-value=0.0025 Score=64.10 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=62.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh--cCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHH---------HH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNE---------VA 388 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~--~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~---------va 388 (722)
..+++++|.+|||||||.+.|...+.. ..... .+.. |....+.....+|... ....+..+.. +.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v-~~tt---r~~~~~e~~gi~y~fq-~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSV-SHTT---RQPRPGEVHGEHYFFV-NHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECC-CEEC---SCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEET
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCceEEEE-EecC---CCCCcccccCceEEEC-CHHHHHHHHhcCHHHHHHHHH
Confidence 458999999999999999999987641 11111 1211 1111110011122211 2222221110 00
Q ss_pred H----HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 004941 389 A----LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 451 (722)
Q Consensus 389 ~----~~l~d~~~~l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r 451 (722)
. .-.+.+.. +.+.|.++|+| .....+..++++...+. .+|+ ...+.+.+++|+..|
T Consensus 91 ~~~yg~~~~~v~~-~l~~G~illLD---LD~~~~~~i~~~l~~~~-tI~i--~th~~~~l~~Rl~~r 150 (219)
T 1s96_A 91 GNYYGTSREAIEQ-VLATGVDVFLD---IDWQGAQQIRQKMPHAR-SIFI--LPPSKIELDRRLRGR 150 (219)
T ss_dssp TEEEEEEHHHHHH-HHTTTCEEEEE---CCHHHHHHHHHHCTTCE-EEEE--ECSSHHHHHHHHHTT
T ss_pred hccCCCCHHHHHH-HHhcCCeEEEE---ECHHHHHHHHHHccCCE-EEEE--ECCCHHHHHHHHHHc
Confidence 0 00011112 22369999999 88888888888744343 3333 235778888888443
No 144
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.09 E-value=0.00028 Score=74.12 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=34.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
++.+|.++|-+||||||+|+.|++.|+..+.+..+++.|+|-
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 466899999999999999999999998878888899999874
No 145
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.07 E-value=0.0011 Score=64.68 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
+.+|+++|.|||||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999999876
No 146
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.05 E-value=0.0027 Score=62.75 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=30.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
++|++-|..||||||.++.|+++|...|+++...
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4789999999999999999999999988887665
No 147
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.04 E-value=0.0021 Score=71.38 Aligned_cols=44 Identities=32% Similarity=0.421 Sum_probs=39.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
.+|.+|+|+|++|+||||++..|+.+|...|.++-+++.|-||-
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP 138 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence 35889999999999999999999999998899999998887654
No 148
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.85 E-value=0.00046 Score=67.23 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=24.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
++.+|+++|.|||||||+|+.|+++|
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999987
No 149
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.80 E-value=0.0048 Score=69.72 Aligned_cols=43 Identities=33% Similarity=0.470 Sum_probs=36.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
.++.+|+++|.||+||||++..|+.++...|.++-+++.|-||
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 4678999999999999999999999998888999999887654
No 150
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.80 E-value=0.0014 Score=64.46 Aligned_cols=43 Identities=28% Similarity=0.302 Sum_probs=36.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
..+.+|.++|.+||||||+++.|+..+...+....+++.|.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 4578999999999999999999999987777777777777663
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.79 E-value=0.0073 Score=63.91 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=37.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
..+.+|+++|.+|+||||++..|+..+...+.++.+++.|-+|
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 3577999999999999999999999998778888888877664
No 152
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.72 E-value=0.0041 Score=69.06 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=38.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEechhhH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYR 360 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~-g~~t~v~~~ddyR 360 (722)
..|.+|+++|.+|+||||++..|+.+|... |.++-+++.|-+|
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 357899999999999999999999999988 9999999998664
No 153
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.70 E-value=0.0054 Score=58.73 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=32.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~-~~g~~t~v~~~ddy 359 (722)
+..++++|-||+||||+++.|+..+. ..|.....++..++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 44789999999999999999999886 55666667776554
No 154
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.70 E-value=0.0029 Score=67.99 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=30.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+.+|+++|.+||||||+|+.|++.++ ..+++.|.|
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 36899999999999999999999876 358888875
No 155
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.70 E-value=0.00063 Score=65.78 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
..+|+++|.+|||||||++.|.+.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999998764
No 156
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.59 E-value=0.0089 Score=60.13 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=25.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
++++|++.|.+||||||+++.|+++|..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4579999999999999999999999876
No 157
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.58 E-value=0.037 Score=55.12 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=32.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 361 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr 361 (722)
.+++|.++|.|||||+|+|..|.+.++.. .+.++..++--|
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~--~~~vv~msD~iK 50 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSGPLK 50 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTT--TEEEECTHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCC--CceEEEccHHHH
Confidence 56799999999999999999999876542 456788876544
No 158
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.50 E-value=0.012 Score=62.63 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=37.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
..+.+|.++|.+|+||||++..|+..+...+.++.+++.|-+|
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 3577999999999999999999999998888888888876554
No 159
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.46 E-value=0.0068 Score=64.35 Aligned_cols=35 Identities=34% Similarity=0.368 Sum_probs=29.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
.|.+|+++|.+||||||||..|++.++ ..+++.|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP-----VELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC-----CcEEeccc
Confidence 467899999999999999999999865 34777764
No 160
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.45 E-value=0.012 Score=65.04 Aligned_cols=42 Identities=36% Similarity=0.366 Sum_probs=37.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
.+.+|+++|.+|+||||++..|+..+...+.++.+++.|-+|
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 567899999999999999999999998888999999887654
No 161
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.43 E-value=0.0059 Score=64.96 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=29.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+.+|+++|.+||||||||..|++.++ ..+++.|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN-----GEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT-----EEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc-----cceeecCcc
Confidence 56899999999999999999998865 357887753
No 162
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.43 E-value=0.022 Score=58.99 Aligned_cols=31 Identities=35% Similarity=0.488 Sum_probs=26.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCC
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGH 349 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~ 349 (722)
.+.-++++|-||+|||++|+.|++.+...+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 3446899999999999999999999976543
No 163
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.33 E-value=0.007 Score=63.29 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=31.5
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
...|..++++|.||+|||++|++|++.++ .....++.+++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~---~~~i~v~~~~l 72 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG---INPIMMSAGEL 72 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT---CCCEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEeHHHh
Confidence 34577889999999999999999999974 45556665444
No 164
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.32 E-value=0.012 Score=55.42 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
+..++++|-||+|||++|+.+++.+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999864
No 165
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.31 E-value=0.015 Score=62.06 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=30.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc--------CCceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL--------GHDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~--------g~~t~v~~~ 356 (722)
.+..++++|.||+||||+|+.+++.+... +.....++.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 34589999999999999999999988543 555556664
No 166
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.29 E-value=0.012 Score=61.81 Aligned_cols=41 Identities=34% Similarity=0.486 Sum_probs=36.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
+.+|+++|.+|+||||++..|+..+...+.++.+++.|-+|
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 67888999999999999999999998888899899887543
No 167
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.28 E-value=0.0035 Score=65.81 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=34.0
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcC--CceEEE-echhh
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHF-NVGKY 359 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g--~~t~v~-~~ddy 359 (722)
..++.+|.++|.+||||||+|+.|++.+...+ .++.++ ..|+|
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 45688999999999999999999999997543 344445 77765
No 168
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.27 E-value=0.005 Score=60.68 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=32.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
..+.+|.++|.+|||||||++.|+..+...|...-.+..|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 457799999999999999999999988744444556666544
No 169
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.20 E-value=0.0091 Score=65.55 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=29.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
+.+|+++|.+||||||||..|++.++. .+++.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~-----~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNG-----EVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTE-----EEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCC-----eEeecCc
Confidence 458999999999999999999999864 3777765
No 170
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.05 E-value=0.03 Score=60.10 Aligned_cols=118 Identities=12% Similarity=0.071 Sum_probs=66.9
Q ss_pred ccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH----Hh----hcCCCCCCCCCCCCHHHH
Q 004941 310 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR----LK----HGVNQSADFFRADNPEGM 381 (722)
Q Consensus 310 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr----~~----~g~~~~~~~~~~~~~~~~ 381 (722)
|.+++... ..-++++.|-||+||||+|..++..+...+..+-+|+...-.. +. .+.....-....-+...+
T Consensus 37 D~~~gGl~-~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~ 115 (338)
T 4a1f_A 37 DNYTSGFN-KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQW 115 (338)
T ss_dssp HHHHCSBC-TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHH
T ss_pred HHHhcCCC-CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHH
Confidence 34444333 3348999999999999999999988777778888887632111 11 011000000001122222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEEEE
Q 004941 382 EARNEVAALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLETI 437 (722)
Q Consensus 382 ~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~-~R~~~~~l-~~~-~~~viflE~~ 437 (722)
..+...+.. +. ...+.|.|..+.+.. -|..++.+ .++ +..+++|+-.
T Consensus 116 ~~l~~a~~~--------l~-~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyL 165 (338)
T 4a1f_A 116 ENLAKCFDH--------LS-QKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYL 165 (338)
T ss_dssp HHHHHHHHH--------HH-HSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred HHHHHHHHH--------Hh-cCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEech
Confidence 222222222 22 246777777666654 47777777 566 7899999863
No 171
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.04 E-value=0.0032 Score=63.56 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
+|++|++.|.+||||||+++.|+++|.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367999999999999999999999984
No 172
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.99 E-value=0.0015 Score=67.00 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=24.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.++.+|++.|.+||||||+|+.|+++|.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999999873
No 173
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.96 E-value=0.0079 Score=64.13 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=35.8
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhh--cCCceEEEechhh
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 359 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~--~g~~t~v~~~ddy 359 (722)
...|++|.++|.+||||||+++.|+..+.. .+..+.++..|+|
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 567899999999999999999999998863 2456777888775
No 174
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.95 E-value=0.0074 Score=61.03 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=35.7
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
..++.+++++|.+|+||||++..|+..|. .|.++-++|.|
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D 50 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLD 50 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECC
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 34678999999999999999999999999 89999899865
No 175
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.94 E-value=0.032 Score=59.51 Aligned_cols=42 Identities=29% Similarity=0.426 Sum_probs=34.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.++.+|.|+|.+||||||+.+.|+..+...+.+..+.+.|-+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 467899999999999999999999998877777766655543
No 176
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.93 E-value=0.018 Score=57.53 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=16.3
Q ss_pred cEEEEEEccCCCChHHHHHHHH-HHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLT-RYL 344 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La-~~L 344 (722)
..+|.++|.+||||||+++.|+ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4589999999999999999999 765
No 177
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.89 E-value=0.0075 Score=59.45 Aligned_cols=40 Identities=20% Similarity=0.067 Sum_probs=34.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+..++++|-||+||||+|+.+++.+...+.....++..++
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3468899999999999999999999877788888877555
No 178
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.89 E-value=0.007 Score=58.64 Aligned_cols=36 Identities=19% Similarity=0.069 Sum_probs=31.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
.+|+++|.+||||||++.+|.+.|...|.++-++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 489999999999999999999999888888777743
No 179
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.89 E-value=0.0083 Score=59.56 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
++.+|+++|.+|+|||||++.|.+.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455899999999999999999998764
No 180
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.88 E-value=0.0031 Score=69.96 Aligned_cols=43 Identities=40% Similarity=0.598 Sum_probs=37.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
..|.+|+++|.||+||||++..|+.++...|.++.+++.|-+|
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 3467899999999999999999999998888999999887664
No 181
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.84 E-value=0.03 Score=59.34 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=24.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
.+..++++|.||+||||+|+.+++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3447889999999999999999998854
No 182
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.83 E-value=0.021 Score=64.28 Aligned_cols=43 Identities=28% Similarity=0.379 Sum_probs=35.1
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
..+.+|.|+|.+||||||+.+.|+..+...+.+..+.+.|.+|
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 4578999999999999999999999887666666666566554
No 183
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.79 E-value=0.017 Score=55.70 Aligned_cols=26 Identities=38% Similarity=0.416 Sum_probs=23.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcC
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLG 348 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g 348 (722)
++++|-||+|||++|+.+++.+...+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~ 66 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGEN 66 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccc
Confidence 89999999999999999999885443
No 184
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.78 E-value=0.067 Score=56.58 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
+.-|+|+|-||+|||++|++|++.+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4578899999999999999999987
No 185
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.76 E-value=0.033 Score=54.33 Aligned_cols=36 Identities=19% Similarity=0.102 Sum_probs=29.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
.-+++++|-||+||||+++.|+. ..+.++.+++...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 34899999999999999999997 3566777777643
No 186
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.75 E-value=0.054 Score=57.04 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=27.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
.+.-|+|+|-||+|||++|++|++.++. ....++.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~---~~~~v~~ 84 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANS---TFFSVSS 84 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTC---EEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCC---CEEEEch
Confidence 3457999999999999999999998653 3444554
No 187
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.71 E-value=0.045 Score=57.37 Aligned_cols=42 Identities=36% Similarity=0.366 Sum_probs=35.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
.+.+|.++|.+|+||||+++.|+..+...+.++.+++.|-+|
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 466888889999999999999999998778888888776543
No 188
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.71 E-value=0.011 Score=57.94 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=29.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
++.+|.++|.+||||||+++.|+..++. ..-+++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 5678999999999999999999998762 2345665543
No 189
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.70 E-value=0.039 Score=55.50 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=26.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
+.-|+++|-||+|||++|++|++.++ .....++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~---~~~~~~~~ 72 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQ---VPFLAMAG 72 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT---CCEEEEET
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC---CCEEEech
Confidence 44588999999999999999999864 33444544
No 190
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.69 E-value=0.024 Score=53.22 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=23.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
+..++++|-||+||||+|+.+++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 335789999999999999999999854
No 191
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.046 Score=58.14 Aligned_cols=148 Identities=12% Similarity=0.055 Sum_probs=74.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhc-------CCceEEEechh-------hHHHhhcCCCCCCCCCCCCHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-------GHDTKHFNVGK-------YRRLKHGVNQSADFFRADNPEGMEA 383 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~-------g~~t~v~~~dd-------yRr~~~g~~~~~~~~~~~~~~~~~~ 383 (722)
..+-.++++|.||+|||++++.+++.|... .+....+|.-. |+.+...+... .......
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~-~~~~~~~------ 115 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE-NLCGDIS------ 115 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC-C--CCCC------
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC-CCCchHH------
Confidence 356688999999999999999999999632 22333454311 11111111000 0000011
Q ss_pred HHHHHHHHHHHHHHHH---hcCCeEEEEeCCCCCHHHHHHHHHH----HcCCceEEEEEEEeC---CHHHHHHHHHHhhh
Q 004941 384 RNEVAALAMEDMISWM---HEGGQVGIFDATNSSRKRRNMLMKM----AEGNCKIIFLETICN---DRDIIERNIRLKIQ 453 (722)
Q Consensus 384 ~~~va~~~l~d~~~~l---~~~G~vVIvDAtn~~~~~R~~~~~l----~~~~~~viflE~~c~---d~~~i~~ri~~r~~ 453 (722)
...++.++.-+ .....++|+|-...-. ..+.+..+ ...+.++.+|=+.++ .+..+..++..|..
T Consensus 116 -----~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~ 189 (318)
T 3te6_A 116 -----LEALNFYITNVPKAKKRKTLILIQNPENLL-SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAH 189 (318)
T ss_dssp -----HHHHHHHHHHSCGGGSCEEEEEEECCSSSC-CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTT
T ss_pred -----HHHHHHHHHHhhhccCCceEEEEecHHHhh-cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCC
Confidence 11222222222 1123588888776543 22333333 223445555543332 13345555555532
Q ss_pred -cCCCCCCCCChHHHHHHHHHHHHhhh
Q 004941 454 -QSPDYAEEPDFEAGLQDFKNRLANYE 479 (722)
Q Consensus 454 -~~pd~~~~~d~e~a~~df~~Ri~~y~ 479 (722)
..-.|..- +.++..+-..+|+....
T Consensus 190 ~~~i~F~pY-t~~el~~Il~~Rl~~~~ 215 (318)
T 3te6_A 190 FTEIKLNKV-DKNELQQMIITRLKSLL 215 (318)
T ss_dssp EEEEECCCC-CHHHHHHHHHHHHHHHC
T ss_pred ceEEEeCCC-CHHHHHHHHHHHHHhhh
Confidence 12234444 77888888888888653
No 192
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.65 E-value=0.013 Score=61.80 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=33.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHh--hcCCceEEEechhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~--~~g~~t~v~~~ddy 359 (722)
.++.+|.++|.+||||||+++.|+..+. -......+++.|++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 4568999999999999999999998876 33445667777654
No 193
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.63 E-value=0.047 Score=57.26 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=31.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.++++|-||+||||+|++|+..+...+.+...++..++
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 57889999999999999999998655667777776544
No 194
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.62 E-value=0.045 Score=59.09 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=32.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
..++++.|-||+||||+|..|+..+...+.++-+++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3488999999999999999999888777788888887
No 195
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.60 E-value=0.01 Score=57.66 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=33.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
..++++|-||+||||+|++|+..+...+.....++..++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 578899999999999999999999877777777776554
No 196
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.60 E-value=0.085 Score=58.35 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=30.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhc--CCceEEEechhh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 359 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~--g~~t~v~~~ddy 359 (722)
--++++|-||+||||+|+.|+..+... +.+...++..++
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 358899999999999999999988654 556666665433
No 197
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.55 E-value=0.16 Score=53.91 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=27.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEe
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFN 355 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~-g~~t~v~~ 355 (722)
.++++|.||+||||+++.+++.+... +.....++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 78899999999999999999988655 45555565
No 198
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.52 E-value=0.0092 Score=62.77 Aligned_cols=42 Identities=31% Similarity=0.308 Sum_probs=36.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechhhH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYR 360 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~-~g~~t~v~~~ddyR 360 (722)
++.+|+++|.+|+||||++..|+..+.. .|.++-+++.|-+|
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 4568999999999999999999999874 78888888887654
No 199
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.46 E-value=0.15 Score=56.39 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=67.0
Q ss_pred ccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechh----hH-HHh---hcCCCCCCCCCCCCHHH
Q 004941 310 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGK----YR-RLK---HGVNQSADFFRADNPEG 380 (722)
Q Consensus 310 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~-~g~~t~v~~~dd----yR-r~~---~g~~~~~~~~~~~~~~~ 380 (722)
|.+++... ..-+++++|-||+||||+|..++..... .+.++-+|+... .. |.. .+.....-....-..+.
T Consensus 191 D~~lgGl~-~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~ 269 (444)
T 2q6t_A 191 DQLIGTLG-PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRD 269 (444)
T ss_dssp HHHHCCCC-TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHH
T ss_pred hhhcCCcC-CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHH
Confidence 44444333 3448999999999999999999988764 467788887632 11 211 12221110001123333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEEE
Q 004941 381 MEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLET 436 (722)
Q Consensus 381 ~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~-~R~~~~~l-~~~~~~viflE~ 436 (722)
+..+...+.. +. .....|.|....+.. -+..++.+ .+++..+++|+.
T Consensus 270 ~~~~~~a~~~--------l~-~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 270 FSRLVDVASR--------LS-EAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHHHHH--------HH-TSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHHH--------Hh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3333322222 22 345666666555544 57777777 567899999984
No 200
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.42 E-value=0.028 Score=57.80 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=28.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+.-++++|-||+|||++|+.|++.++ .....++..++
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~---~~~~~i~~~~~ 86 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN---APFIKVEATKF 86 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT---CCEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC---CCEEEEcchhc
Confidence 34578999999999999999999874 34455665444
No 201
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.36 E-value=0.059 Score=57.78 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=26.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
+.-|+|+|-||+|||++|++|++.++. ....++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~---~~~~v~~ 117 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANS---TFFSVSS 117 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTC---EEEEEEH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC---CEEEeeH
Confidence 345788999999999999999998753 3444554
No 202
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.36 E-value=0.046 Score=55.88 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
+.-++++|-||+||||+|++|++.++.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 345889999999999999999988643
No 203
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.26 E-value=0.087 Score=56.86 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=32.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
..-++.+.|-||+||||||..++..+...+.++.+++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 345899999999999999999999887777777777764
No 204
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.25 E-value=0.017 Score=62.01 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=35.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
.+..+|+++|.||+||||++..|+..+...|.++-+++.|
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 3567899999999999999999999998788888888776
No 205
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.23 E-value=0.049 Score=58.10 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
-++++.|.||+||||||.+++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 36789999999999999999976
No 206
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.22 E-value=0.015 Score=54.67 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=29.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
.++++|-+|+||||+++.|+..+...|.+...++.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 67889999999999999999988666666666654
No 207
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.043 Score=60.86 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=25.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
.|.=|+|.|.||+|||++|++||..+++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 35568999999999999999999987654
No 208
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.17 E-value=0.022 Score=61.27 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=25.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
.-|+|+|.||+|||++|+.|++.++ .....++.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~---~~~~~~~~ 105 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD---IPIAISDA 105 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEG
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC---CCEEEecc
Confidence 3588999999999999999999874 33444543
No 209
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.14 E-value=0.015 Score=61.34 Aligned_cols=41 Identities=32% Similarity=0.465 Sum_probs=33.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
++.+|.++|.+||||||+++.|+..+...+.+..+.+.|-+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 46689999999999999999999998766666666655533
No 210
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.13 E-value=0.051 Score=56.00 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
+.-++++|-||+||||+|++|++.++
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998864
No 211
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.05 E-value=0.16 Score=53.46 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=31.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
.-+++++|-||+||||+|..++......+.++-+|+.
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 4589999999999999999999877666667777765
No 212
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.00 E-value=0.066 Score=54.65 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=24.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
..+.-++++|-||+|||++|++|++.++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3456799999999999999999999854
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.043 Score=60.25 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=36.6
Q ss_pred ccccccccccCCCCcccc-chhhhhhhccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 284 IDLKLDTETKNSMPAAAG-AVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 284 ~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
+||.++...++.+-+.-- ++..+.++... |.. .|.=|+|.|.||+|||.+|++||..++..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~-gi~--~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESL-GIA--QPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHH-TCC--CCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhC-CCC--CCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 356666544444433210 12223344332 222 23458999999999999999999987654
No 214
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.97 E-value=0.019 Score=60.52 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=33.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
..+.++.|+|..||||||+++.|+..+...+.+..+.+.|-+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 356799999999999999999999988766666655554444
No 215
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.97 E-value=0.078 Score=56.95 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=31.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
.-++++.|-||+||||+|..++..+...+..+-+++..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34789999999999999999998877667777777764
No 216
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.051 Score=60.25 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
.|.=|+|.|.||+|||++|++||..++..
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 34568999999999999999999987644
No 217
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.85 E-value=0.078 Score=55.93 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=29.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc---CCceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL---GHDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~---g~~t~v~~~ 356 (722)
.+-.++++|.||+||||+++.+++.+... +.....++.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 34578999999999999999999988544 455556654
No 218
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.84 E-value=0.021 Score=61.77 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=34.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
..+.+|.|+|..||||||+++.|+..+...+.+..+...|-+|
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 3578999999999999999999999987666666665554443
No 219
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.79 E-value=0.032 Score=56.55 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=36.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
.+++-|++.|-||+||||+|-.++..+...|.++.+++.|.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 35678999999999999999999999998899998888753
No 220
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.76 E-value=0.19 Score=54.41 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=31.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
-++++.|-||+||||+|..++..+...+.++-+|+.+
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3677799999999999999998877667788888764
No 221
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.75 E-value=0.034 Score=56.16 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=25.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
.+.+|.++|-+||||||+++.|+..++..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 45789999999999999999999988643
No 222
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.059 Score=59.64 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
|.=|+|.|.||+|||++|++||..++..
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999987644
No 223
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.06 Score=59.52 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
|.=|+|.|.||+|||.+|++||..++..
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~ 243 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSAT 243 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCC
Confidence 4569999999999999999999987654
No 224
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.67 E-value=0.094 Score=56.14 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=27.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
.+.-|+|+|-||+|||++|++|++.++ .....++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~---~~~~~i~~ 150 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG---ATFFSISA 150 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT---CEEEEEEG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC---CeEEEEeh
Confidence 345689999999999999999998864 34444554
No 225
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP: c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A* 2l3h_A 2l77_A 2l79_A
Probab=94.62 E-value=0.071 Score=56.57 Aligned_cols=65 Identities=22% Similarity=0.244 Sum_probs=47.6
Q ss_pred EEEecccccccccCC---C-----c-CCCCCCCHHHHHHHHHHHHHHHHHhcCCC-------CCEEEEcChHHHHHHHHH
Q 004941 531 ILLTRHGESRDNVRG---R-----I-GGDTILSDAGEIYAKKLANFVEKRLKSER-------AASIWTSTLQRTILTASP 594 (722)
Q Consensus 531 IyLvRHGes~~n~~~---~-----~-~GD~pLTe~G~~QA~~L~~~L~~~l~~~~-------~~~V~sSpl~RaiQTA~~ 594 (722)
.+|.|||.+.=.... . + .+...||+.|.+|...+|+++++++.+.- .-.|++|...||++||+.
T Consensus 7 ~vl~RHG~R~P~~~~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~ll~~~~~~~~v~vrst~~~Rt~~SA~~ 86 (354)
T 1nd6_A 7 TLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMT 86 (354)
T ss_dssp EEEEECCCBCCSCCCTTCSCCGGGSTTCTTCBCHHHHHHHHHHHHHHHHHTTTTTCSSCCGGGEEEEEESCHHHHHHHHH
T ss_pred EEEecCCCCCCccccCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhccccCcCeEEEEECCchHHHHHHHH
Confidence 567899987432110 0 0 12357999999999999999998865321 135899999999999998
Q ss_pred h
Q 004941 595 I 595 (722)
Q Consensus 595 i 595 (722)
+
T Consensus 87 f 87 (354)
T 1nd6_A 87 N 87 (354)
T ss_dssp H
T ss_pred H
Confidence 8
No 226
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.59 E-value=0.031 Score=57.82 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=30.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
..++++|-||+||||+|+.|++.+...+.....++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 85 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence 37899999999999999999999876555566666543
No 227
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.55 E-value=0.033 Score=53.95 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=28.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
.+++++|.+||||||+.+.|.+.+...+.++-++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i 40 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEE
Confidence 3789999999999999999999887666666555
No 228
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.46 E-value=0.1 Score=56.40 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
+.-|+|+|-||+|||++|++|++.++
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc
Confidence 45789999999999999999998864
No 229
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.066 Score=59.70 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=25.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
.|.=|+|.|.||+|||++|++||..++..
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 35568999999999999999999987654
No 230
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.38 E-value=0.093 Score=55.46 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=30.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc------CCceEEEechh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWL------GHDTKHFNVGK 358 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~------g~~t~v~~~dd 358 (722)
.-+++++|-||+||||+|..|+...... +.++.+++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3489999999999999999999765322 55677777754
No 231
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.35 E-value=0.2 Score=55.56 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=63.0
Q ss_pred ccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechh----hHHHh----hcCCCCCCCC-CCCCHH
Q 004941 310 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGK----YRRLK----HGVNQSADFF-RADNPE 379 (722)
Q Consensus 310 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~-~g~~t~v~~~dd----yRr~~----~g~~~~~~~~-~~~~~~ 379 (722)
|.+++... ..-++++.|-||+||||+|..|+..+.. .|.++-+|+... .++.. .+.... .+. ..-..+
T Consensus 194 D~~~gGl~-~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~-~l~~g~l~~~ 271 (454)
T 2r6a_A 194 DRMTSGFQ-RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQ-NLRTGKLTPE 271 (454)
T ss_dssp HHHHSSBC-TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHH-HHHTSCCCHH
T ss_pred HhhcCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHH-HHhcCCCCHH
Confidence 34443333 3348999999999999999999988764 466787777531 11111 111100 000 001222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEEE
Q 004941 380 GMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLET 436 (722)
Q Consensus 380 ~~~~~~~va~~~l~d~~~~l~~~G~vVIvDAtn~~~~-~R~~~~~l-~~~~~~viflE~ 436 (722)
.+..+.+.+. .+. .....|.|....+.. .+..++.+ .+++..+++|+.
T Consensus 272 ~~~~~~~a~~--------~l~-~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~ 321 (454)
T 2r6a_A 272 DWGKLTMAMG--------SLS-NAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDY 321 (454)
T ss_dssp HHHHHHHHHH--------HHH-SSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred HHHHHHHHHH--------HHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 2222222111 222 345666665444544 46667777 457888998873
No 232
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.35 E-value=0.084 Score=58.64 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
+.-|+|+|.||+||||+|++|++.++.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 345899999999999999999998754
No 233
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.28 E-value=0.03 Score=60.49 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
...|+|+|.||+||||+++.|++.|++.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3468899999999999999999998754
No 234
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.24 E-value=0.024 Score=57.33 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
-|+++|.||+||||+|++|+..++
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998864
No 235
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.24 E-value=0.15 Score=56.49 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=22.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
-++|+|-||+||||+|+.|++.++
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 689999999999999999999864
No 236
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase, phytate binding site, hydrolase; HET: IHP; 1.88A {Enterobacter cloacae} PDB: 1nt4_A*
Probab=94.20 E-value=0.14 Score=56.19 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=48.4
Q ss_pred cEEEeccccccc--c-------cC-C---Cc-CCCCCCCHHHHHHHHHHHHHHHHHh--cCC---------CCCEEEEcC
Q 004941 530 PILLTRHGESRD--N-------VR-G---RI-GGDTILSDAGEIYAKKLANFVEKRL--KSE---------RAASIWTST 584 (722)
Q Consensus 530 ~IyLvRHGes~~--n-------~~-~---~~-~GD~pLTe~G~~QA~~L~~~L~~~l--~~~---------~~~~V~sSp 584 (722)
-++|.|||-+.- + .. . .+ .+...||+.|.+|...+|+++++++ .+. ..-.|+++.
T Consensus 10 V~vl~RHG~R~P~~~~~~~~~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~~~ll~~~~~~~~~~v~vrst~ 89 (398)
T 3ntl_A 10 VLIMSRANLRAPLANNGSVLEQSTPKQWPEWEVPGGQLTTKGGVLEVYMGHYMREWLAQQGMVKTGECPAADSVYAYANS 89 (398)
T ss_dssp EEEEEECCSBCCCGGGHHHHHHTCSSCCCCCSSCTTSBCHHHHHHHHHHHHHHHHHHHHTTSSCTTSCCCTTSEEEEECS
T ss_pred EEEEecCCCCCCCCCCcccccCCCCcccccCCCCccccchHHHHHHHHHHHHHHHHHhhcCCCccccCCCcCeEEEEECC
Confidence 356889997532 1 00 0 11 2367799999999999999999887 211 224689999
Q ss_pred hHHHHHHHHHh
Q 004941 585 LQRTILTASPI 595 (722)
Q Consensus 585 l~RaiQTA~~i 595 (722)
..||++||+.+
T Consensus 90 ~~Rt~~SA~~f 100 (398)
T 3ntl_A 90 LQRTVATAQFF 100 (398)
T ss_dssp SHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 99999999988
No 237
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.19 E-value=0.041 Score=53.52 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=27.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
.+++++|-||+||||++.+++..+...+.++.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4889999999999999988887776666666665
No 238
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.18 E-value=0.038 Score=58.27 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=34.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKY 359 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~-~~g~~t~v~~~ddy 359 (722)
.-++|.|-||+|||+||++|+..+. ..+.++..++..++
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 4688999999999999999999998 88888888877655
No 239
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.17 E-value=0.024 Score=52.48 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=25.8
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
|++.|-||+|||++|+.|++.....+.... ++.
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~ 59 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRE 59 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEE-EEC
Confidence 789999999999999999987654444444 544
No 240
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.17 E-value=0.081 Score=54.71 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=22.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
++++|.||+||||+|+.+++.+..
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999998753
No 241
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.16 E-value=0.08 Score=55.33 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=23.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.|-++++.|-||+|||++|++|++.++
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 345788999999999999999998864
No 242
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.13 E-value=0.043 Score=53.70 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=30.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
-+++++|-||+||||+++.|+..+...+.++.+++.+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 4788899999999999999997776556677777654
No 243
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.09 E-value=0.047 Score=56.82 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=33.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
...+|.++|-.|+||||+|..|+..|...|.++-++|.|
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 344555559999999999999999999999999999986
No 244
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.09 E-value=0.37 Score=53.36 Aligned_cols=47 Identities=19% Similarity=0.151 Sum_probs=36.1
Q ss_pred ccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 310 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 310 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
|.+++... +.-++++.|-||+||||+|..++......|.++-+|+..
T Consensus 188 D~~lgGl~-~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 188 DRMTYGYK-RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp HHHHSSBC-SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred HhhcCCCC-CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 44554222 345899999999999999999998876667788888653
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.98 E-value=0.2 Score=53.47 Aligned_cols=40 Identities=15% Similarity=0.035 Sum_probs=30.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh------cCCceEEEechh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW------LGHDTKHFNVGK 358 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~------~g~~t~v~~~dd 358 (722)
..-+++++|-||+||||+|..|+..... .+.++.+++...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4558999999999999999999976322 355677777644
No 246
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.83 E-value=0.038 Score=53.69 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=23.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
.+++++|-||+||||+++.+++.+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47899999999999999999998864
No 247
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.83 E-value=0.18 Score=55.32 Aligned_cols=48 Identities=17% Similarity=0.057 Sum_probs=31.0
Q ss_pred ccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhh------cCCceEEEech
Q 004941 310 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW------LGHDTKHFNVG 357 (722)
Q Consensus 310 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~------~g~~t~v~~~d 357 (722)
|.+++..=...-++.++|-||||||||+..|+-.... .+..+.+|+..
T Consensus 168 D~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 168 DTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp HHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred HHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 4444333123448999999999999999988744321 23456667664
No 248
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.82 E-value=0.044 Score=54.27 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=27.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh-----hcC-CceEEEech
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR-----WLG-HDTKHFNVG 357 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~-----~~g-~~t~v~~~d 357 (722)
+++++++|.||||||++|..+...+. ..| ....+.+.+
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 46889999999999999988765542 345 445455543
No 249
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.80 E-value=0.063 Score=55.43 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=22.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
++++|-||+||||+|+.+++.+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999998753
No 250
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.72 E-value=0.064 Score=57.49 Aligned_cols=41 Identities=22% Similarity=0.127 Sum_probs=37.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
..+.++++.|-.|.||||+|..||..|...|.++-++|.|-
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35778999999999999999999999998999999999875
No 251
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.71 E-value=0.19 Score=50.80 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
.++-|+++|.||+|||||..+|..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999998874
No 252
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=93.71 E-value=0.095 Score=45.79 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=42.7
Q ss_pred ceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEE
Q 004941 29 GQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLL 95 (722)
Q Consensus 29 ~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~ 95 (722)
...-|+| +-+| ....+.|+|+=. +|+ +++|...+ +.|++.+.+++. ..+|||++
T Consensus 9 ~~~~v~F-~wap---~a~~V~v~GdFn---~W~---~~~m~~~~-g~w~~~v~l~~G--~~~YKf~V 62 (96)
T 1z0n_A 9 QARPTVF-RWTG---GGKEVYLSGSFN---NWS---KLPMTRSQ-NNFVAILDLPEG--EHQYKFFV 62 (96)
T ss_dssp -CEEEEE-EECS---CCSCEEEEEGGG---TTC---CEECEEET-TEEEEEEEECSE--EEEEEEEE
T ss_pred CceEEEE-EECC---CCcEEEEEEEeC---CCc---cccCEECC-CEEEEEEEccCC--CEEEEEEE
Confidence 3456788 7777 367899999876 898 68999864 799999988774 46999998
No 253
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.70 E-value=0.067 Score=52.31 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=27.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
+...|+++|.+|+||||+...|+..+... .+.-++
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i 63 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAM 63 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEE
Confidence 34689999999999999999999886533 344444
No 254
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.69 E-value=0.043 Score=55.76 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=29.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
-|+++|-||+|||++|+.|++.+...+.....++...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 4778999999999999999988765555666676544
No 255
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.67 E-value=0.084 Score=55.85 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=36.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
+.++++.|-.|+||||+|..||..|...|.++-++|.|-
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 678999999999999999999999999999999999874
No 256
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.65 E-value=0.034 Score=58.10 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
+..|+|+|-||+|||++|++|+..++
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC
Confidence 44689999999999999999998864
No 257
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.63 E-value=0.045 Score=57.91 Aligned_cols=42 Identities=21% Similarity=0.156 Sum_probs=31.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhc-C-CceEEEechhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-G-HDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~-g-~~t~v~~~ddy 359 (722)
.++.+|.++|.+||||||+++.|+..+... | .+.-++..|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 467899999999999999999999888632 3 23445555443
No 258
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.58 E-value=0.063 Score=53.23 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=31.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
.-+++++|-||+||||+|.+++..+...+.++.+++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 34889999999999999999987776567777777664
No 259
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.42 E-value=0.038 Score=57.22 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.3
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~ 345 (722)
++|+|.||+||||+++.|+..++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 89999999999999999998754
No 260
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.42 E-value=0.53 Score=50.26 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=23.8
Q ss_pred ccEEEEE--EccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVL--VGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvl--vGLPGSGKSTlAr~La~~L~~ 346 (722)
.+-++++ +|.||+||||+++.+++.+..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 3456777 999999999999999988764
No 261
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.37 E-value=0.047 Score=52.86 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.+.++|-+||||||+.+.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999885
No 262
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.30 E-value=0.073 Score=56.54 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=36.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.+.++++.|-.|.||||+|..||..|...|.++-++|.|-.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 35688899999999999999999999999999999998743
No 263
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.30 E-value=0.13 Score=55.39 Aligned_cols=136 Identities=10% Similarity=0.066 Sum_probs=65.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC-CCCCC-CCCHHHHHHHHHHHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-ADFFR-ADNPEGMEARNEVAALAMEDMISW 398 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~-~~~~~-~~~~~~~~~~~~va~~~l~d~~~~ 398 (722)
.+++++|-+||||||+.+.|...+..... ...++ +.+......... ..+.. ...... . .......+.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g-~I~ie--~~~e~~~~~~~~~v~~v~~q~~~~~--~---~~~~t~~~~i~~ 247 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQR-LITIE--DVPELFLPDHPNHVHLFYPSEAKEE--E---NAPVTAATLLRS 247 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSC-EEEEE--SSSCCCCTTCSSEEEEECC---------------CCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCce-EEEEC--CccccCccccCCEEEEeecCccccc--c---ccccCHHHHHHH
Confidence 47999999999999999999987653222 22232 111111000000 01111 111000 0 000001111111
Q ss_pred -HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 004941 399 -MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG 467 (722)
Q Consensus 399 -l~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r~~~~pd~~~~~d~e~a 467 (722)
+.......|++..-. .+..+.+..+ ..|+...+.+....+......|+...........+. +.+..
T Consensus 248 ~l~~~pd~~l~~e~r~-~~~~~~l~~l-~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~~~~~~~-~~~~i 314 (361)
T 2gza_A 248 CLRMKPTRILLAELRG-GEAYDFINVA-ASGHGGSITSCHAGSCELTFERLALMVLQNRQGRQL-PYEII 314 (361)
T ss_dssp HTTSCCSEEEESCCCS-THHHHHHHHH-HTTCCSCEEEEECSSHHHHHHHHHHHHTTSTTGGGS-CHHHH
T ss_pred HHhcCCCEEEEcCchH-HHHHHHHHHH-hcCCCeEEEEECCCCHHHHHHHHHHHHhccccccCC-CHHHH
Confidence 223445667766544 2333444444 345555677778888888888888765433222333 44444
No 264
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.30 E-value=0.092 Score=56.30 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=31.6
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
....+|.++|.||+|||||-..|...+...+.+..++..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence 346789999999999999999999887666666666643
No 265
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.29 E-value=0.079 Score=56.50 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=33.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
+..+|.++|.||+||||+...|+..+...+.++.+++.|
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 456888999999999999999999887777777777654
No 266
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.26 E-value=0.046 Score=54.47 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
...|+++|-+|+||||+|.+|++++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 46799999999999999999998754
No 267
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.24 E-value=0.042 Score=55.45 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~ 345 (722)
++++|-||+||||+++.|+..+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998764
No 268
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.24 E-value=0.04 Score=53.95 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.+++++|.+|||||||.+.|...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999998763
No 269
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.22 E-value=0.057 Score=64.23 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=28.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
..|.=|+|.|.||+|||++|++||..++ .....++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg---~~~~~v~~ 271 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETG---AFFFLING 271 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTT---CEEEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC---CeEEEEEh
Confidence 3466799999999999999999998765 34444554
No 270
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.21 E-value=0.38 Score=53.87 Aligned_cols=47 Identities=4% Similarity=-0.173 Sum_probs=36.0
Q ss_pred ccccCCCCCccEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEech
Q 004941 310 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVG 357 (722)
Q Consensus 310 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~-g~~t~v~~~d 357 (722)
|.+++... ..-++++.|-||+||||+|.+++..+... |.++-+|+..
T Consensus 233 D~~lgGl~-~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 233 NDKTLGAR-GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp HHHHCCCC-TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred hHhhcccC-CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 44454322 34589999999999999999999887655 7788888764
No 271
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.20 E-value=0.088 Score=53.11 Aligned_cols=37 Identities=16% Similarity=0.070 Sum_probs=32.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 355 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~ 355 (722)
+..+++++|-||+||||++..++.++...|.++.++.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4579999999999999999999998887888888884
No 272
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 4e3w_A 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A*
Probab=93.06 E-value=0.22 Score=53.21 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=48.0
Q ss_pred cEEEecccccccccC--C----CcCCCCCCCHHHHHHHHHHHHHHHHHh---cCC-------CCCEEEEcChHHHHHHHH
Q 004941 530 PILLTRHGESRDNVR--G----RIGGDTILSDAGEIYAKKLANFVEKRL---KSE-------RAASIWTSTLQRTILTAS 593 (722)
Q Consensus 530 ~IyLvRHGes~~n~~--~----~~~GD~pLTe~G~~QA~~L~~~L~~~l---~~~-------~~~~V~sSpl~RaiQTA~ 593 (722)
-+.+.|||.+.-... . .-.|...||+.|.+|...+|+++++++ .+. .--.++++...||++||+
T Consensus 11 v~v~~RHG~R~p~~~~p~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~~Yv~~~~~l~~~~~~~~v~~rst~~~Rt~~Sa~ 90 (342)
T 3it3_A 11 VSMITRHGDRAPFANIENANYSWGTELSELTPIGMNQEYNLGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQ 90 (342)
T ss_dssp EEEEEECCCBCCSSCCTTCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHTTTSCSSCSSCCTTSEEEEECSSHHHHHHHH
T ss_pred EEEEEeCCCCCCcccCCCCcccCCCChHhhhHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEECCChHHHHHHH
Confidence 367889998642210 0 011245799999999999999999887 221 123689999999999999
Q ss_pred Hh
Q 004941 594 PI 595 (722)
Q Consensus 594 ~i 595 (722)
.+
T Consensus 91 ~~ 92 (342)
T 3it3_A 91 SL 92 (342)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 273
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.06 E-value=0.041 Score=58.82 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=26.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
+.-|+|+|-||+|||++|++|++.++ .....++.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~---~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD---VPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEech
Confidence 34588899999999999999999874 33444444
No 274
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.05 E-value=0.25 Score=55.40 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=24.8
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
|+|+|.||+||||+|++|+..++ .....++.
T Consensus 52 vLL~GppGtGKT~Laraia~~~~---~~f~~is~ 82 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEAN---VPFFHISG 82 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT---CCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CCeeeCCH
Confidence 88999999999999999998764 33444544
No 275
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP; 2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A* 1dkm_A 1dkn_A 1dko_A 1dkl_A
Probab=93.00 E-value=0.17 Score=55.36 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=47.4
Q ss_pred cEEEecccccccccCC------------Cc-CCCCCCCHHHHHHHHHHHHHHHHHhcC--C---------CCCEEEEcCh
Q 004941 530 PILLTRHGESRDNVRG------------RI-GGDTILSDAGEIYAKKLANFVEKRLKS--E---------RAASIWTSTL 585 (722)
Q Consensus 530 ~IyLvRHGes~~n~~~------------~~-~GD~pLTe~G~~QA~~L~~~L~~~l~~--~---------~~~~V~sSpl 585 (722)
-.+|.|||.+.=.... .+ .+.-.||..|.+|...+|+++++++.. . ..-.|+++..
T Consensus 11 v~vl~RHG~R~P~~~~~~~~~~~~~~w~~w~~~~g~LT~~G~~~~~~lG~~lr~ry~~~~ll~~~~~p~~~~v~v~st~~ 90 (410)
T 1dkq_A 11 VVIVSRAGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVD 90 (410)
T ss_dssp EEEEEECCSBCCSCCCHHHHHTCSSCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCCTTTEEEEECSS
T ss_pred EEEEecCCcCCCCCCCccccccCcccccCCCCCCCccchHHHHHHHHHHHHHHHHHHhcCCCccccCCCcceEEEEeCCc
Confidence 3567899976322110 01 124569999999999999999988631 0 1235899999
Q ss_pred HHHHHHHHHh
Q 004941 586 QRTILTASPI 595 (722)
Q Consensus 586 ~RaiQTA~~i 595 (722)
.||++||+.+
T Consensus 91 ~RT~~SA~~~ 100 (410)
T 1dkq_A 91 ERTRKTGEAF 100 (410)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999988
No 276
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.93 E-value=0.091 Score=56.16 Aligned_cols=39 Identities=21% Similarity=0.102 Sum_probs=35.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
.+.++++.|-.|+||||+|..||..|...|.++-++|.|
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 356789999999999999999999999999999999987
No 277
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.88 E-value=0.2 Score=51.23 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
+.+-|+++|.||+|||||..+|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHC
Confidence 456799999999999999999974
No 278
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.83 E-value=0.054 Score=57.47 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
-.++++|.||+||||+|+.|+..++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3588999999999999999999875
No 279
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.76 E-value=0.032 Score=56.68 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.9
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
++++|-||+|||++|++|++.++.
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 789999999999999999998754
No 280
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.74 E-value=0.082 Score=51.00 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=33.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
++.++.+-.|+||||+|..|+..|...|.++-++|.|-
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 44555688999999999999999999999999999873
No 281
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.69 E-value=0.13 Score=50.60 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=32.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 355 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~ 355 (722)
+..+++++|-|||||||.+-.++.++...|.++.++.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3569999999999999999999999887888888874
No 282
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.67 E-value=0.1 Score=51.82 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=27.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEec
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNV 356 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~-~~g~~t~v~~~ 356 (722)
.-++.++|-+||||||+++.|+.... ..+....+++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 34789999999999999999985433 34455555554
No 283
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.65 E-value=0.24 Score=58.23 Aligned_cols=35 Identities=26% Similarity=0.515 Sum_probs=29.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
-++|+|-||+|||++|+.|++.+ +.....+|..+|
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~ 524 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEY 524 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGC
T ss_pred EEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhh
Confidence 68999999999999999999987 345566777665
No 284
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=92.65 E-value=0.075 Score=55.55 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=66.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 397 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~ 397 (722)
..+++|+|-|.-|+||.++.+.|.+.|.-.|+++.-|..-..+... ..|+ ....+
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~~------~~yl-----------wR~~~-------- 127 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEKS------HDFL-----------WRIEK-------- 127 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHHT------SCTT-----------HHHHT--------
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhhc------CCHH-----------HHHHH--------
Confidence 4699999999999999999999999998777766655321111100 1111 11111
Q ss_pred HHhcCCeEEEEeCCCCCHH-------------HHHHHHH---H----HcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 004941 398 WMHEGGQVGIFDATNSSRK-------------RRNMLMK---M----AEGNCKIIFLETICNDRDIIERNIRLKIQ 453 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~~~~-------------~R~~~~~---l----~~~~~~viflE~~c~d~~~i~~ri~~r~~ 453 (722)
.|=..|.++|+|-....+. ..+.+.+ + ...|+.++=+-... +.+..++|++.|..
T Consensus 128 ~lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhI-skeEQ~kR~~~R~~ 202 (289)
T 3rhf_A 128 QVPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNI-SKDEQKKRLIARLD 202 (289)
T ss_dssp TCCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEC-CHHHHHHHHHHHHH
T ss_pred hCCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEC-CHHHHHHHHHHHhc
Confidence 1224699999998765431 1122222 2 46676553333334 57788888988765
No 285
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.61 E-value=0.59 Score=47.94 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=24.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
..-+++++|-+||||||+.+.|+..+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 34589999999999999999999887643
No 286
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=92.56 E-value=0.15 Score=57.56 Aligned_cols=110 Identities=12% Similarity=0.084 Sum_probs=65.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 397 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~ 397 (722)
..+++|||-|.-||||+|..+.|.+.|.-.|.++..+..-.++... ..|+ .....
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~------~~yl-----------~R~~~-------- 95 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELE------RPPQ-----------WRFWR-------- 95 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHT------SCTT-----------HHHHH--------
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhcc------CChh-----------hhHHH--------
Confidence 4689999999999999999999999998888777666433332211 1121 11111
Q ss_pred HHhcCCeEEEEeCCCCCH------------H-HHHHHHH-------HHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 004941 398 WMHEGGQVGIFDATNSSR------------K-RRNMLMK-------MAEGNCKIIFLETICNDRDIIERNIRLKIQ 453 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~~~------------~-~R~~~~~-------l~~~~~~viflE~~c~d~~~i~~ri~~r~~ 453 (722)
-+=..|.+||+|-..... + ..+.+.. +...|+.++-+-... +.+..++|+..|..
T Consensus 96 ~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~i-s~eeq~kRl~~R~~ 170 (500)
T 3czp_A 96 RLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHL-SKKQLKERLKALEK 170 (500)
T ss_dssp HCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-CHHHHHHCC-----
T ss_pred hCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEC-CHHHHHHHHHHHhc
Confidence 133479999999764322 2 1112222 245677664444444 57888888887754
No 287
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.54 E-value=0.054 Score=54.24 Aligned_cols=26 Identities=15% Similarity=0.461 Sum_probs=23.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
+-.+++.|.||+||||+|.+|++.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999999874
No 288
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.54 E-value=0.063 Score=51.79 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=27.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
++.++|-+|||||||++.|.+.+...|.+.-.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I 36 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVV 36 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE
Confidence 689999999999999999999987655444333
No 289
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.52 E-value=0.06 Score=55.26 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~ 345 (722)
++++|-||+||||+++.|+..+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 88999999999999999998764
No 290
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=92.51 E-value=0.075 Score=47.16 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=52.5
Q ss_pred CceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccCCCce-EEEEecCCCCCceeEEEEEecCCCCCceee
Q 004941 28 GGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMW-ELSFVVPPNHETLDFKFLLKPKYGNGPCIV 106 (722)
Q Consensus 28 ~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W-~~~l~~~~~~~~leyKf~~~~~~~~~~~~w 106 (722)
+.+.-|-.+ + =-..-.||.- +..|+|.+...++|.+..+.-| ..+++++.-. .|||+| . + ..-.|
T Consensus 9 g~~vTvyY~--s--g~~~~ylHy~---~~~g~Wt~vpgv~M~~~~~~Gw~~~TI~~~~~~-~l~~~F--~--d--G~~~W 74 (102)
T 2c3v_A 9 ATDITIYYK--T--GWTHPHIHYS---LNQGAWTTLPGVPLTKSEXEGXVKVTIEAEEGS-QLRAAF--N--N--GSGQW 74 (102)
T ss_dssp CCSEEEEEE--C--CCSSCEEEEE---ETTCCBCCTTCEECEECSSTTEEEEEECCCTTC-EEEEEE--E--C--SSSCE
T ss_pred CCEEEEEEc--C--CCCcEEEEEe---CCCCCcccCCCcCccccccCCceEEEEecCCCc-eEEEEE--e--C--CCccc
Confidence 555556556 1 1223356654 4558999999999999766665 7999998654 799999 2 2 23479
Q ss_pred ccCCCcccccC
Q 004941 107 EEGPNRLLTGG 117 (722)
Q Consensus 107 E~g~NR~l~~~ 117 (722)
++..+|-+..+
T Consensus 75 DNN~g~Ny~~~ 85 (102)
T 2c3v_A 75 DNNQGRDYDFS 85 (102)
T ss_dssp ECGGGTCEEEE
T ss_pred ccCCCcceEEC
Confidence 99888776553
No 291
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=92.50 E-value=0.066 Score=54.66 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=22.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
++|.++|.+||||||+|+.|+++++.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~ 27 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSA 27 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47999999999999999999987553
No 292
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.44 E-value=0.066 Score=56.78 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=24.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
+..++++|-||+|||++|+++++.+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357899999999999999999999863
No 293
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.44 E-value=0.11 Score=53.60 Aligned_cols=37 Identities=11% Similarity=-0.023 Sum_probs=29.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEec
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV 356 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~-g~~t~v~~~ 356 (722)
.-+++++|-||+||||+++.|+..+... |.++.+++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3489999999999999999999887644 556666654
No 294
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=92.44 E-value=0.16 Score=53.57 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=32.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
.+++|+|-|.-||||+|..+.|.++|.-.|+++..+
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~ 120 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL 120 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe
Confidence 589999999999999999999999998887776655
No 295
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.43 E-value=0.89 Score=48.57 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=23.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
..-++.++|-||||||||++.|+..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35589999999999999999999775
No 296
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.37 E-value=0.13 Score=50.35 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=23.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
+...|+++|.+|+|||||...|...+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3567888899999999999999987643
No 297
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.37 E-value=0.095 Score=58.42 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
-++|+|-||+|||++|+.|++.+..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999853
No 298
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.36 E-value=0.065 Score=59.45 Aligned_cols=35 Identities=26% Similarity=0.173 Sum_probs=26.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
.-++|.|.||+|||++|++|++.++.. .....++.
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~~-~~~~~~~~ 98 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGSK-VPFCPMVG 98 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCTT-SCEEEEEG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCCC-ceEEEEeH
Confidence 458899999999999999999998632 33344444
No 299
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.35 E-value=0.14 Score=50.86 Aligned_cols=41 Identities=10% Similarity=-0.006 Sum_probs=35.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEechhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKY 359 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~-g~~t~v~~~ddy 359 (722)
.+++.+..+-.|+||||+|..|+..|... |.++-++|.|-.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 35566777889999999999999999988 999999998643
No 300
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.27 E-value=0.075 Score=52.69 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=32.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
|.+.|-.|+||||+|..|+..|...|.++-++|.|-
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 334899999999999999999999999999999864
No 301
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.25 E-value=0.033 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.3
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~ 343 (722)
-|+++|.+|+||||+..+|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999754
No 302
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.24 E-value=0.35 Score=50.69 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=22.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..-++++.|-||+|||++|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999975
No 303
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.20 E-value=0.21 Score=51.07 Aligned_cols=24 Identities=38% Similarity=0.391 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
.+-|+++|.||+|||||..+|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999754
No 304
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.13 E-value=0.06 Score=53.85 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
.++.+|.+.|..||||||+++.|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45679999999999999999999865
No 305
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.10 E-value=0.11 Score=52.79 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=34.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.+++.+..+-.|+||||+|..|+..|. .|.++-++|.|-.
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 455666679999999999999999999 9999999998743
No 306
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.10 E-value=0.13 Score=50.84 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=33.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
+.+.+..+-.|+||||+|..|+..|...|.++-++|.|-
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 455666788999999999999999998899999999864
No 307
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.07 E-value=0.15 Score=48.43 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
...-|+++|.+|+|||||..+|..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999874
No 308
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.06 E-value=0.13 Score=55.27 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=36.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh--hcCCceEEEechh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGK 358 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~--~~g~~t~v~~~dd 358 (722)
.+.++++.|-.|.||||+|..||..|. ..|.++-++|.|-
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 356888999999999999999999999 8999999999874
No 309
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.95 E-value=0.074 Score=55.87 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
-|+++|-||+|||++|+.|++.++.
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~ 81 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSA 81 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCC
Confidence 4799999999999999999988653
No 310
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.94 E-value=0.16 Score=51.53 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=35.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.+++.++.+-.|+||||+|..|+..|...|.++-++|.|-.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~ 58 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFL 58 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45666777899999999999999999988999999998744
No 311
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella pneumoniae} PDB: 2wni_A 2wu0_A
Probab=91.93 E-value=0.26 Score=53.99 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhc--CC--------CCCEEEEcChHHHHHHHHHh
Q 004941 550 DTILSDAGEIYAKKLANFVEKRLK--SE--------RAASIWTSTLQRTILTASPI 595 (722)
Q Consensus 550 D~pLTe~G~~QA~~L~~~L~~~l~--~~--------~~~~V~sSpl~RaiQTA~~i 595 (722)
...||+.|.+|...+|+++++++. +. ..-.|++|...||++||+.+
T Consensus 53 ~g~LT~~G~~q~~~lG~~lr~rY~~~~ll~~~~~~~~~v~~rst~~~Rt~~Sa~~f 108 (418)
T 2wnh_A 53 DGELTGHGYAAVVNKGREEGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQAL 108 (418)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCTTTEEEEECSSHHHHHHHHHH
T ss_pred cCccChhHHHHHHHHHHHHHHHHHhcCCcccCCCCCCeEEEEECCCHHHHHHHHHH
Confidence 457999999999999999988764 21 12358999999999999988
No 312
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.93 E-value=0.15 Score=52.57 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=32.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
+|.+.|-.|+||||+|..|+..|...|.++-++|.|-
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3444799999999999999999998899999999863
No 313
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.91 E-value=0.13 Score=60.64 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=34.8
Q ss_pred CccE-EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 318 HRHL-AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~-lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
.+|. .++|+|-||+|||++|++|++.+...+.....+|..+|
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY 560 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence 3454 68999999999999999999998666677778887666
No 314
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.86 E-value=0.15 Score=51.58 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=32.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
+|.+.|-.|+||||+|..|+..|...|.++-++|.|-
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 3444799999999999999999998899999999863
No 315
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.83 E-value=0.98 Score=42.31 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=20.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..-|+++|.+|+|||||..+|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 446889999999999999988643
No 316
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.75 E-value=0.25 Score=50.78 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
++-|+++|.||+|||||..+|...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 567999999999999999999743
No 317
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.75 E-value=0.073 Score=52.92 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
..++.++|.+|||||||.+.|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3478999999999999999999876
No 318
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.73 E-value=0.089 Score=51.54 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.-++.++|-+||||||+.+.|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44899999999999999999998764
No 319
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=91.72 E-value=0.17 Score=49.86 Aligned_cols=37 Identities=30% Similarity=0.262 Sum_probs=32.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
++.+..+-.|+||||+|..|+..|...| ++-++|.|-
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~ 38 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDP 38 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCC
Confidence 4556678899999999999999999889 999998864
No 320
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.68 E-value=0.13 Score=48.54 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.1
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
-++.-|+++|.+|+|||||.++|..
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999999975
No 321
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.66 E-value=0.085 Score=51.69 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=22.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
..-++.++|-+||||||+++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999999754
No 322
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=91.62 E-value=0.9 Score=47.48 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.6
Q ss_pred EEEEEEccCCCChHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~ 342 (722)
..|+++|.||+|||||..+|..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999874
No 323
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.61 E-value=0.92 Score=47.41 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
..+-.|.++|.||+|||||..+|..
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3456899999999999999998863
No 324
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=91.60 E-value=0.16 Score=50.92 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=34.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
+++.+..+-.|+||||+|..|+..|...|.++-++|.|-
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 456666788999999999999999999999999999874
No 325
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.60 E-value=0.1 Score=58.73 Aligned_cols=35 Identities=31% Similarity=0.288 Sum_probs=27.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
+..++++|.||+||||+|+.|++.++ .....++..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~---~~~i~in~s 111 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG---YDILEQNAS 111 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT---CEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC---CCEEEEeCC
Confidence 34789999999999999999999874 344445443
No 326
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.59 E-value=0.15 Score=54.71 Aligned_cols=39 Identities=18% Similarity=0.051 Sum_probs=35.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh--hcCCceEEEech
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVG 357 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~--~~g~~t~v~~~d 357 (722)
.+.++++.|-.|.||||+|..||..+. ..|.++-++|.|
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 346888999999999999999999999 889999999987
No 327
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.56 E-value=0.17 Score=49.99 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=27.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH-hhcCCceEEEec
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYL-RWLGHDTKHFNV 356 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L-~~~g~~t~v~~~ 356 (722)
.-++++.|-||+|||++|.+++... ...+..+.+++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4489999999999999999987653 233555656643
No 328
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=91.53 E-value=0.19 Score=50.69 Aligned_cols=39 Identities=31% Similarity=0.297 Sum_probs=34.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
+.+.++.+-.|+||||+|..|+..|...|.++-++|.|-
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 456677789999999999999999998899999999864
No 329
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.52 E-value=0.19 Score=53.65 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=30.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
+..++.++|.||+||||+.+.|...+...+.+..++..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEE
Confidence 45689999999999999999999887655666655543
No 330
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=91.51 E-value=0.2 Score=52.22 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=35.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
..+++.+..+-+|.||||+|..||..|...|.++-++|.|-.
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 345666777889999999999999999988999999998753
No 331
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.51 E-value=0.099 Score=54.83 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=21.8
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~ 345 (722)
++++|.||+||||+|+.|++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999976
No 332
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=91.43 E-value=0.18 Score=52.86 Aligned_cols=60 Identities=15% Similarity=0.346 Sum_probs=49.7
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccC-CCceEEEEecCCCCCceeEEEEEe
Q 004941 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES-ASMWELSFVVPPNHETLDFKFLLK 96 (722)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~-~~~W~~~l~~~~~~~~leyKf~~~ 96 (722)
....-.|+|+..+| ....+.|+|+=. +|+ +.++|.... -+.|++++.+|+. ..+|||++-
T Consensus 166 ~~~k~~v~f~~~~~---~~~~V~v~GsF~---~W~--~~~~l~k~~~~g~~~~~~~L~~G--~y~YkFiVD 226 (294)
T 3nme_A 166 GLKRKTVTLTLKDK---GFSRVEISGLDI---GWG--QRIPLTLGKGTGFWILKRELPEG--QFEYKYIID 226 (294)
T ss_dssp CCCCEEEEEEEECS---SCSCEEEEETTT---EEE--EEEECEECTTTCEEEEEEEECSE--EEEEEEEET
T ss_pred ccccccceeeeccC---CCCEEEEEEecc---CCC--CcccceEcCCCCEEEEEEECCCc--eEEEEEEEC
Confidence 34556899999999 567799999776 788 779999964 8999999999975 589999975
No 333
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.31 E-value=0.42 Score=53.90 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=28.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
.-++.++|.||+|||||++.|+..+...|.+...+..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4488999999999999999999877655555545544
No 334
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=91.30 E-value=0.16 Score=58.10 Aligned_cols=38 Identities=16% Similarity=0.067 Sum_probs=35.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
+.++++.|-+|.||||+|..|+..+...|.++-++|.|
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 45788999999999999999999999899999999987
No 335
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.27 E-value=0.22 Score=51.40 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=33.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+.+.+...-+|.||||+|..||..|...|.++-++|.|-.
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4444444679999999999999999999999999998743
No 336
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.25 E-value=0.12 Score=56.33 Aligned_cols=26 Identities=27% Similarity=0.149 Sum_probs=23.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
+.+|+++|.||+||||+++.|+..+.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44889999999999999999998764
No 337
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.12 E-value=0.11 Score=50.79 Aligned_cols=28 Identities=32% Similarity=0.390 Sum_probs=23.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCC
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGH 349 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~ 349 (722)
++.++|.+|+||||+.+.|+..+...|+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~Gi 30 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSGV 30 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCCE
Confidence 5889999999999999999998853343
No 338
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=91.09 E-value=0.21 Score=56.22 Aligned_cols=110 Identities=14% Similarity=0.056 Sum_probs=69.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 397 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~~~~~~~~~~~~~~~~~~va~~~l~d~~~ 397 (722)
..+++|++-|.-||||++..+.|.+.|.-.|+++..+..-.++... ..|+ ......
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~~------~~yl-----------~R~~~~------- 353 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERA------QPYL-----------WRFWRH------- 353 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHHT------SCTT-----------HHHHTT-------
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhhc------chHH-----------HHHHHh-------
Confidence 3689999999999999999999999998888887766443332211 1122 011111
Q ss_pred HHhcCCeEEEEeCCCCCH------------H-HHHHHHH-------HHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 004941 398 WMHEGGQVGIFDATNSSR------------K-RRNMLMK-------MAEGNCKIIFLETICNDRDIIERNIRLKIQ 453 (722)
Q Consensus 398 ~l~~~G~vVIvDAtn~~~------------~-~R~~~~~-------l~~~~~~viflE~~c~d~~~i~~ri~~r~~ 453 (722)
+=..|.++|+|-..... + ..+.+.+ +...|+.++-+-... +.+..++|+..|..
T Consensus 354 -lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~i-s~eeQ~~R~~~R~~ 427 (500)
T 3czp_A 354 -IPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAI-DKQTQMERFKEREK 427 (500)
T ss_dssp -CCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEC-CHHHHHHHHHHHHH
T ss_pred -CCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEEC-CHHHHHHHHHHHhc
Confidence 22469999999876432 2 1212222 245566554444444 57888899988865
No 339
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.07 E-value=0.07 Score=56.03 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.6
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~ 345 (722)
|+|+|-||+|||++|+.|++.+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 88999999999999999999875
No 340
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.01 E-value=0.091 Score=52.00 Aligned_cols=39 Identities=13% Similarity=-0.028 Sum_probs=28.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh------cCCceEEEechh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW------LGHDTKHFNVGK 358 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~------~g~~t~v~~~dd 358 (722)
.-++.++|-||+||||+++.|+..... .+..+..++..+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 448999999999999999999975211 234555666543
No 341
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.97 E-value=0.075 Score=55.80 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
-++|+|-||+|||++|+.|++.++.
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4888999999999999999998753
No 342
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.91 E-value=0.1 Score=54.27 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
..++++|-||+|||++|+.+++.++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588899999999999999998875
No 343
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.90 E-value=0.25 Score=51.68 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=32.2
Q ss_pred EEEEEE-ccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 321 LAIVLV-GLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 321 ~lIvlv-GLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
.+|+++ .-+|.||||+|..||..|...|.++-++|.|-
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 355555 46999999999999999998999999999864
No 344
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.89 E-value=0.12 Score=54.60 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=22.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
++++|-||+||||+|+.|++.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 789999999999999999999864
No 345
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.88 E-value=0.2 Score=51.67 Aligned_cols=41 Identities=10% Similarity=-0.034 Sum_probs=34.2
Q ss_pred cEEEEEE--ccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 004941 320 HLAIVLV--GLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 360 (722)
Q Consensus 320 ~~lIvlv--GLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyR 360 (722)
+.+.++. +-.|+||||+|..|+..|...|.++-++|.|-..
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 4444454 6999999999999999999899999999987653
No 346
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=90.88 E-value=0.12 Score=57.25 Aligned_cols=38 Identities=0% Similarity=-0.027 Sum_probs=25.4
Q ss_pred CCeEEEEeCCCCC-HHHHHHHHHHHcCCceEEEEEEEeC
Q 004941 402 GGQVGIFDATNSS-RKRRNMLMKMAEGNCKIIFLETICN 439 (722)
Q Consensus 402 ~G~vVIvDAtn~~-~~~R~~~~~l~~~~~~viflE~~c~ 439 (722)
.+-+.|+|++... ......+..+.+.+.+++++--.|+
T Consensus 104 d~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D 142 (456)
T 4dcu_A 104 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLD 142 (456)
T ss_dssp SEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECcc
Confidence 4778899998754 4455555555666788877776665
No 347
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.85 E-value=0.3 Score=49.88 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=19.2
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~ 343 (722)
-|+++|.||+|||||..+|...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999743
No 348
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.63 E-value=0.076 Score=49.03 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=20.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~ 345 (722)
|+++|-||+|||++|+.|++...
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS
T ss_pred EEEECCCCccHHHHHHHHHHhCC
Confidence 77899999999999999986543
No 349
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=90.49 E-value=0.32 Score=56.98 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=52.9
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccCcccCCCceEEEEecCCCCCceeEEEEE
Q 004941 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLL 95 (722)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~ 95 (722)
..+..-|+|.+.+|. ....+.|+|+-. +|++. +.+|... -+.|++++++|+. ..+|||++
T Consensus 14 ~~~~~~v~f~~~~~~--~~~~v~~~G~Fn---~w~~~-~~~~~~~-~~~~~~~~~L~~g--~~~y~f~v 73 (696)
T 4aee_A 14 RKGRYIVKFTRHWPQ--YAKNIYLIGEFT---SLYPG-FVKLRKI-EEQGIVYLKLWPG--EYGYGFQI 73 (696)
T ss_dssp EEEEEEEEEEEECCT--TCSCEEEEETTS---CSSTT-SCBCEEE-TTEEEEEEEECSE--EEEEEEEE
T ss_pred CCCcEEEEEEEECCC--CCcEEEEEEecC---CCCCC-CcceEec-CCeEEEEEEcCCc--eEEEEEEE
Confidence 457789999999988 567899999998 99985 6899988 8999999999997 57999999
No 350
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=90.49 E-value=0.56 Score=52.62 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=27.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+.-|+|+|-||+|||++|++|+..+ +.....++..++
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l 274 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 274 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHh
Confidence 3458899999999999999999885 344445655433
No 351
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.48 E-value=0.55 Score=60.01 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=37.5
Q ss_pred hccccC-CCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 309 ADQMLG-PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 309 ~~~~~~-~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
.|.+++ ..-.+.-+|++.|-||+||||+|..++..+...+.++.+|+..
T Consensus 720 LD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E 769 (1706)
T 3cmw_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 769 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred HHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc
Confidence 344554 2223455899999999999999999999887777788888764
No 352
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.46 E-value=0.47 Score=52.17 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEEccCCCChHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~ 342 (722)
.|+++|.|++|||||..+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEE
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998863
No 353
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.45 E-value=0.14 Score=53.88 Aligned_cols=26 Identities=19% Similarity=0.177 Sum_probs=22.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.|. ++++|-||+||||+++.|++.+.
T Consensus 36 ~~~-~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 36 LPH-LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CCC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHHc
Confidence 344 88999999999999999999764
No 354
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.33 E-value=0.35 Score=51.38 Aligned_cols=115 Identities=7% Similarity=0.026 Sum_probs=58.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhcCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-ADFFRADNPEGMEARNEVAALAMEDMISWM 399 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddyRr~~~g~~~~-~~~~~~~~~~~~~~~~~va~~~l~d~~~~l 399 (722)
.+++++|-+||||||+.+.|+..+........+-+.+++ ....... ..++.. .+.+.+..+++. |
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~---~~~~~~~~i~~~~g---gg~~~r~~la~a--------L 237 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI---VFKHHKNYTQLFFG---GNITSADCLKSC--------L 237 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC---CCSSCSSEEEEECB---TTBCHHHHHHHH--------T
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc---ccccchhEEEEEeC---CChhHHHHHHHH--------h
Confidence 379999999999999999999776533222222222111 0000000 011111 112233344443 2
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 004941 400 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 451 (722)
Q Consensus 400 ~~~G~vVIvDAtn~~~~~R~~~~~l~~~~~~viflE~~c~d~~~i~~ri~~r 451 (722)
...-.++|+|=... .+..+.+..+.. +...+++-++..+....-.|+..-
T Consensus 238 ~~~p~ilildE~~~-~e~~~~l~~~~~-g~~tvi~t~H~~~~~~~~dri~~l 287 (330)
T 2pt7_A 238 RMRPDRIILGELRS-SEAYDFYNVLCS-GHKGTLTTLHAGSSEEAFIRLANM 287 (330)
T ss_dssp TSCCSEEEECCCCS-THHHHHHHHHHT-TCCCEEEEEECSSHHHHHHHHHHH
T ss_pred hhCCCEEEEcCCCh-HHHHHHHHHHhc-CCCEEEEEEcccHHHHHhhhheeh
Confidence 33677888986555 334445555443 333345555665554455555543
No 355
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.31 E-value=1.1 Score=58.00 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=39.3
Q ss_pred hccccC-CCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 309 ADQMLG-PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 309 ~~~~~~-~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
.|.+++ ..=.++..|+++|.||+||||||.+++......|.++.+++..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 455665 3323566899999999999999999998887788999999875
No 356
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.29 E-value=0.13 Score=56.86 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
+.-|+|+|.||+|||++|++|+..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3468899999999999999999986
No 357
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.28 E-value=0.16 Score=53.59 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=23.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
-.++++|-||+||||+|+.+++.+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999999864
No 358
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.24 E-value=0.2 Score=47.62 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=23.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
..-++.++|-.||||||+.+.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34589999999999999999999887
No 359
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.22 E-value=0.14 Score=53.56 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=28.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
-|+++|-||+|||++|+.|+......+.....+|..
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~ 62 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSARSDRPLVTLNCA 62 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECS
T ss_pred cEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCC
Confidence 478899999999999999998765544555556543
No 360
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.20 E-value=0.15 Score=57.92 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
+..++|+|-||+||||+|+.|+..++
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 44789999999999999999999875
No 361
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.17 E-value=0.15 Score=52.92 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=24.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
.++-.|++.|.||+|||++|.+|+..+...
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~ 131 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY 131 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 344579999999999999999999875433
No 362
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.17 E-value=0.27 Score=52.96 Aligned_cols=39 Identities=15% Similarity=0.079 Sum_probs=33.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
.+++.++.|-.|+||||+|..||..|...|.++-++|.|
T Consensus 143 ~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 143 SSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 344555567999999999999999999889999999987
No 363
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.15 E-value=0.34 Score=48.53 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=33.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 355 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~ 355 (722)
.+..+.+.+|-||+||||.+-.++.++...|.++.++.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34579999999999999999999998888888888884
No 364
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.02 E-value=0.17 Score=53.42 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=22.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
-++.++|.+|||||||++.|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 479999999999999999999887
No 365
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.96 E-value=0.18 Score=49.01 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=22.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
....-|+++|.+|+|||||..+|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345679999999999999999998653
No 366
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.96 E-value=0.82 Score=44.30 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=20.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
...-|+++|.+|+|||||..+|...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3456889999999999999988754
No 367
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.96 E-value=0.21 Score=46.81 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
..++-|+++|.+|+|||||..+|..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 4567799999999999999999875
No 368
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=89.72 E-value=0.18 Score=51.00 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=33.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
+++.++.+-.|+||||+|..|+..|...|.++-++|.|-.
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4445555889999999999999999988999999998753
No 369
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.71 E-value=0.26 Score=58.69 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
|.=|+|.|.||+|||.+|++||..++..
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 3347899999999999999999886644
No 370
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.63 E-value=0.26 Score=45.35 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
+++-|+++|.+|+|||||..+|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 467799999999999999999864
No 371
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.58 E-value=0.76 Score=49.39 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
+|+++|-+||||||+.+.|...+...
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCC
Confidence 89999999999999999999888754
No 372
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.58 E-value=0.23 Score=45.97 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=22.1
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
...+-|+++|.+|+|||||..+|...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34577999999999999999998754
No 373
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.55 E-value=0.26 Score=55.60 Aligned_cols=31 Identities=29% Similarity=0.273 Sum_probs=24.8
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
|+|+|-||+||||+|++|+..+. .....++.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g 97 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR---VPFITASG 97 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCEEEEeh
Confidence 89999999999999999998764 33344554
No 374
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.52 E-value=0.78 Score=54.62 Aligned_cols=35 Identities=26% Similarity=0.181 Sum_probs=26.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
.+.-|+|+|-||+||||+|+.|+..++ .....++.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~---~~~i~v~~ 271 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETG---AFFFLING 271 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTT---CEEEEEEH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcC---CcEEEEEc
Confidence 344689999999999999999998754 33344544
No 375
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.42 E-value=0.35 Score=55.30 Aligned_cols=39 Identities=31% Similarity=0.302 Sum_probs=35.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
.+.++++.|.+|.||||+|..|+..|...|.++-++|.|
T Consensus 326 ~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~D 364 (589)
T 1ihu_A 326 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 364 (589)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCC
Confidence 567888999999999999999999999999999999886
No 376
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.41 E-value=0.19 Score=51.61 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=21.7
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 004941 323 IVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~L~ 345 (722)
++++|-||+|||++|+.+++.+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 89999999999999999999874
No 377
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.37 E-value=0.22 Score=47.03 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
+++-|+++|.+|+|||||...|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 5678999999999999999999754
No 378
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.26 E-value=0.42 Score=52.25 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=25.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceE
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 352 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~ 352 (722)
-+.++|-||+|||||++.|++.+...+-+++
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~ 206 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV 206 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHCTTSE
T ss_pred EEEEecCCCCChhHHHHHHHHHHhhcCCCee
Confidence 4778899999999999999998876544443
No 379
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=89.24 E-value=0.27 Score=50.68 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=33.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
++.+..+-.|+||||+|..|+..|...|.++-++|.|-
T Consensus 6 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 6 VIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 45555688999999999999999999999999999875
No 380
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.22 E-value=0.23 Score=46.80 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
...-|+++|.||+|||||.++|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999753
No 381
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.21 E-value=0.23 Score=46.20 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
+..|+++|.||+|||||.++|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999974
No 382
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.12 E-value=0.23 Score=50.96 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
.-+++++|-||+||||++..|+..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 44899999999999999999997654
No 383
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.01 E-value=0.26 Score=44.70 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
++-|+++|.+|+|||||...|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999998754
No 384
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.97 E-value=0.28 Score=45.48 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
++.-|+++|.+|+|||||..+|..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999864
No 385
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.96 E-value=0.22 Score=46.87 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=20.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
.+.+-|+++|.+|+|||||..+|..
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999874
No 386
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=88.95 E-value=0.14 Score=54.69 Aligned_cols=29 Identities=21% Similarity=0.085 Sum_probs=26.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
+++.|++-|.-|+||||+++.|+++|...
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~~ 34 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASGG 34 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 46789999999999999999999998764
No 387
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.92 E-value=0.27 Score=45.02 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..+-|+++|.+|+|||||..+|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999998753
No 388
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=88.84 E-value=0.69 Score=50.85 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
.++-|+++|.||+|||||.+.|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999754
No 389
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.84 E-value=0.26 Score=46.67 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
.+.+-|+++|.+|+|||||..+|..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 3567899999999999999998864
No 390
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle, glycoprotein phosphohistidine, hydrolase; HET: NEP NAG; 1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB: 1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Probab=88.83 E-value=0.81 Score=50.32 Aligned_cols=46 Identities=20% Similarity=0.089 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcC---CCCCEEEEcChHHHHHHHHHh
Q 004941 550 DTILSDAGEIYAKKLANFVEKRLKS---ERAASIWTSTLQRTILTASPI 595 (722)
Q Consensus 550 D~pLTe~G~~QA~~L~~~L~~~l~~---~~~~~V~sSpl~RaiQTA~~i 595 (722)
...||+.|++|...+|++|++++.. ...-.|+||...||++||+.+
T Consensus 101 ~G~LT~~G~~q~~~lG~~lr~rY~~ll~~~~v~vrST~~~Rti~Sa~~f 149 (442)
T 1qwo_A 101 ADDLTPFGEQQLVNSGIKFYQRYKALARSVVPFIRASGSDRVIASGEKF 149 (442)
T ss_dssp SSSBCHHHHHHHHHHHHHHHHHTHHHHTTCCCEEEEESCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhccCceEEEeCCccHHHHHHHHH
Confidence 5579999999999999999887432 123469999999999999987
No 391
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.78 E-value=0.19 Score=49.07 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.5
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~ 343 (722)
+|+++|-+|||||++|.+|+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3788999999999999999855
No 392
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.75 E-value=0.25 Score=47.33 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
..+.|+++|.+|+|||||.+.|....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998643
No 393
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.68 E-value=0.2 Score=48.76 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..-|+++|.+|+||||+|.+|.++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 457999999999999999999875
No 394
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.64 E-value=0.34 Score=55.50 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=28.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 354 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~ 354 (722)
-+++++|-||+||||+++.|.+.+...+.+..+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3788999999999999999999888777666544
No 395
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.63 E-value=0.32 Score=46.29 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.5
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
....+=|+++|.+|+|||||..++...
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999887753
No 396
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.58 E-value=0.29 Score=44.52 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
++-|+++|.||+|||||..+|..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999988874
No 397
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.57 E-value=0.28 Score=46.34 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=21.7
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
...+-|+++|.+|+|||||.++|...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999754
No 398
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.36 E-value=0.26 Score=58.95 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=31.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 359 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ddy 359 (722)
-++++|-||+|||++|+.|++.+...+.....+|..++
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 627 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence 78899999999999999999998655556666776554
No 399
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.23 E-value=0.3 Score=44.80 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=20.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
.+-|+++|.+|+|||||..+|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 45689999999999999999874
No 400
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=88.11 E-value=0.51 Score=46.18 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=29.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 355 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~ 355 (722)
.+.+..+-+|+||||+|..|+..|...|.++-+++
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 34555567999999999999999998899988875
No 401
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.07 E-value=0.37 Score=44.72 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
.++-|+++|.+|+|||||..+|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 456799999999999999999874
No 402
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.04 E-value=0.3 Score=46.22 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..+.-|+++|.+|+|||||..+|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35568999999999999999998754
No 403
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.96 E-value=1.9 Score=55.92 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=34.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
++-.++++|-||+||||+|.++...-...|.++.+++..+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee 1119 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1119 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccc
Confidence 4458999999999999999999987777799999988753
No 404
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.95 E-value=0.49 Score=51.08 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=25.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
..-+|+++|-+||||||+.+.|+..+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 34589999999999999999999987654
No 405
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.91 E-value=0.33 Score=44.78 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
.++-|+++|.||+|||||.++|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 356799999999999999998863
No 406
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=87.87 E-value=0.71 Score=50.72 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.0
Q ss_pred EEEEEccCCCChHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~ 342 (722)
.|+++|.|++|||||-.+|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~ 23 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVK 23 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999874
No 407
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=87.86 E-value=0.4 Score=53.02 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=25.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCC
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGH 349 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~ 349 (722)
.+++.|.|||||||++..+++.|...+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999987665
No 408
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.84 E-value=0.35 Score=44.04 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
++=|+++|.+|+|||||..+|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998743
No 409
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=87.78 E-value=2.2 Score=46.13 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
..+-|+++|.+++|||||..+|...+.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~ 36 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAA 36 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhh
Confidence 456799999999999999999987543
No 410
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.61 E-value=0.34 Score=45.29 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
+++=|+++|.+|+|||||..+|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999743
No 411
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=87.59 E-value=0.33 Score=46.34 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
..++=|+++|.+|+|||||..+|..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999863
No 412
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=87.53 E-value=0.15 Score=57.42 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
=|+|+|-||+|||++|+.|+..+.
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 478899999999999999998764
No 413
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.41 E-value=0.38 Score=43.92 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
++=|+++|.+|+|||||.++|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45689999999999999999875
No 414
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.40 E-value=0.21 Score=48.14 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
....|+++|.+|+|||||.+.|..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998864
No 415
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.40 E-value=0.37 Score=44.65 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..+-|+++|.+|+|||||..+|...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999988753
No 416
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.32 E-value=0.41 Score=44.79 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
...+-|+++|.+|+|||||..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35677999999999999999998754
No 417
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.31 E-value=0.3 Score=44.85 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.8
Q ss_pred EEEEEEccCCCChHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLT 341 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La 341 (722)
+=|+++|.||+|||||..+|.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 348999999999999999985
No 418
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=87.30 E-value=0.28 Score=57.79 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=22.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
-++|+|-||+|||++|+.|++.+.
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999984
No 419
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.29 E-value=0.4 Score=44.37 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..+-|+++|.+|+|||||..+|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999998754
No 420
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.29 E-value=2.3 Score=54.46 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=36.9
Q ss_pred hccccC-CCCCccEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 004941 309 ADQMLG-PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 357 (722)
Q Consensus 309 ~~~~~~-~~~~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~d 357 (722)
.|.+++ ..=.+.-++++.|-||+||||+|.+++......|..+-+|+..
T Consensus 371 LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E 420 (1706)
T 3cmw_A 371 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 420 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred HHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 344554 2212345899999999999999999998877777788888774
No 421
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.25 E-value=0.29 Score=44.85 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=18.2
Q ss_pred EEEEEccCCCChHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLT 341 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La 341 (722)
=|+++|.||+|||||.++|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999998885
No 422
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.23 E-value=0.48 Score=51.06 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=34.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec-hhhHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRRL 362 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~-ddyRr~ 362 (722)
-++++|-+||||||+++.|...+...+....++|. ++|+..
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 78 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKEM 78 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHHHH
Confidence 36788999999999999999888778888888986 456553
No 423
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.21 E-value=0.5 Score=44.39 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
.++-|+++|.+|+|||||..+|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4667999999999999999998754
No 424
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=87.09 E-value=0.39 Score=50.72 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=24.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
+-.++++|-||+|||++|+.+++.|..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 447999999999999999999999864
No 425
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.04 E-value=0.4 Score=44.60 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=21.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..++-|+++|.+|+|||||..+|...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 34567999999999999999988743
No 426
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.91 E-value=0.27 Score=46.57 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.5
Q ss_pred EEEEEEccCCCChHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~ 342 (722)
+-|+++|.||+|||||.+.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3489999999999999999875
No 427
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=86.87 E-value=0.36 Score=48.75 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.3
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
..++-|+|+|.||+|||||...|..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC
Confidence 3567899999999999999998863
No 428
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=86.86 E-value=2.5 Score=45.73 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
.+-|+++|.+++|||||..+|....
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~ 27 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKIL 27 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChh
Confidence 4579999999999999999998764
No 429
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.85 E-value=0.4 Score=46.02 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
.+-|+++|.+|+|||||.+.|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999854
No 430
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.74 E-value=0.43 Score=43.79 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..+-|+++|.+|+|||||..+|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999988743
No 431
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=86.73 E-value=0.28 Score=53.23 Aligned_cols=31 Identities=23% Similarity=0.092 Sum_probs=24.1
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG 348 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~L~~~g 348 (722)
.+.+.|++-|.-|+||||+++.|+++|...+
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 3567899999999999999999999987665
No 432
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=86.73 E-value=0.38 Score=47.89 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.5
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
..++-|+++|.+|+|||||...|..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcC
Confidence 3567899999999999999999874
No 433
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=86.69 E-value=0.41 Score=43.75 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
.++-|+++|.+|+|||||..+|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999999875
No 434
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.69 E-value=0.29 Score=52.44 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
..+.++|-+|||||||++.|+..+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998754
No 435
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.69 E-value=0.41 Score=43.75 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
++=|+++|.+|+|||||..+|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999988743
No 436
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.62 E-value=0.32 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L 344 (722)
+++++|+.||||||+.+.|....
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 78999999999999999998653
No 437
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=86.62 E-value=0.44 Score=45.18 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
.+++-|+++|.+|+|||||..+|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 4567899999999999999999874
No 438
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.56 E-value=0.31 Score=48.76 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
-++.++|..|||||||.+.|+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999744
No 439
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.56 E-value=0.33 Score=48.15 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
-++.++|..|||||||.+.|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37889999999999999999976
No 440
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.55 E-value=0.35 Score=45.19 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLT 341 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La 341 (722)
.+++-|+++|.+|+|||||..+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 356789999999999999998886
No 441
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=86.45 E-value=0.29 Score=52.57 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=34.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 358 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~dd 358 (722)
+++.++.+-.|+||||+|..||..|...|.++-++|.|-
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~ 40 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDP 40 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 355666789999999999999999999999999999873
No 442
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=86.44 E-value=5.5 Score=43.75 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..+-|+++|.+++|||||..+|...
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4567999999999999999988543
No 443
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=86.44 E-value=0.43 Score=44.20 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
..+=|+++|.+|+|||||..+|..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999999874
No 444
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.41 E-value=0.31 Score=49.12 Aligned_cols=23 Identities=13% Similarity=0.158 Sum_probs=20.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
-++.++|-.|||||||.+.|+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47999999999999999999744
No 445
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=86.41 E-value=0.45 Score=44.95 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
...-|+++|.+|+|||||.++|..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 467899999999999999998864
No 446
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.41 E-value=0.48 Score=44.72 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.8
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
.+.+-|+++|.+|+|||||..+|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999999873
No 447
>3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate phosphohydrolase, 37288-11-2, MYO-inositol hexakis sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger} SCOP: c.60.1.2 PDB: 3k4p_A* 1ihp_A
Probab=86.40 E-value=1.2 Score=49.15 Aligned_cols=46 Identities=20% Similarity=0.078 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcC---CCCCEEEEcChHHHHHHHHHh
Q 004941 550 DTILSDAGEIYAKKLANFVEKRLKS---ERAASIWTSTLQRTILTASPI 595 (722)
Q Consensus 550 D~pLTe~G~~QA~~L~~~L~~~l~~---~~~~~V~sSpl~RaiQTA~~i 595 (722)
...||+.|.+|...+|+++++++.. .....+++|...||++||+.+
T Consensus 102 ~g~LT~~G~~~~~~lG~~~r~rY~~l~~~~~~~~rst~~~Rt~~Sa~~f 150 (444)
T 3k4q_A 102 ADDLTPFGEQELVNSGIKFYQRYESLTRNIVPFIRSSGSSRVIASGKKF 150 (444)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHTHHHHTTCCCEEEEEESHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhHHhccCCceEEEeCCccHHHHHHHHH
Confidence 6689999999999999999877431 123468999999999999988
No 448
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=86.31 E-value=0.55 Score=44.38 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.0
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
...+-|+++|.+|+|||||..+|...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 34577999999999999999998753
No 449
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=86.31 E-value=1.2 Score=50.31 Aligned_cols=38 Identities=8% Similarity=0.095 Sum_probs=27.5
Q ss_pred CCeEEEEeCCCCC-HHHHHHHHHHHcCCceEEEEEEEeC
Q 004941 402 GGQVGIFDATNSS-RKRRNMLMKMAEGNCKIIFLETICN 439 (722)
Q Consensus 402 ~G~vVIvDAtn~~-~~~R~~~~~l~~~~~~viflE~~c~ 439 (722)
.+-++|+|++... ...+..|..+...+.+++++--.|+
T Consensus 107 D~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~D 145 (528)
T 3tr5_A 107 DSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMD 145 (528)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 4889999999864 5567777777777787766655554
No 450
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.26 E-value=0.44 Score=43.61 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
+.+=|+++|.+|+|||||.++|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3567999999999999999998754
No 451
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.24 E-value=0.45 Score=44.17 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
.++-|+++|.+|+|||||..+|...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4677999999999999999998743
No 452
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=86.24 E-value=0.57 Score=44.43 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=22.1
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
....+-|+++|.+|+|||||..+|..
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhc
Confidence 34566799999999999999998874
No 453
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.20 E-value=0.53 Score=44.56 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
..+-|+++|.+|+|||||..+|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 456799999999999999999875
No 454
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.05 E-value=0.49 Score=43.28 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
++=|+++|.+|+|||||..+|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45689999999999999999874
No 455
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=85.96 E-value=2.1 Score=47.71 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..+-|+++|.+++|||||..+|...
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999998755
No 456
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.93 E-value=0.34 Score=48.90 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
-++.++|-.|||||||.+.|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998654
No 457
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.93 E-value=0.41 Score=55.02 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=23.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
.++++|-||+||||+|+.|+..+...
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 68899999999999999999987644
No 458
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=85.83 E-value=0.41 Score=48.53 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
-++.++|..|||||||.+.|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998654
No 459
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=85.91 E-value=0.15 Score=49.05 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=21.1
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
.+.+-|+++|.+|+|||||..+|..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3566799999999999999988863
No 460
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=85.69 E-value=0.44 Score=43.47 Aligned_cols=21 Identities=48% Similarity=0.491 Sum_probs=18.9
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 004941 323 IVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 323 IvlvGLPGSGKSTlAr~La~~ 343 (722)
|+++|.+|+|||||..+|...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998753
No 461
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=85.60 E-value=0.44 Score=44.81 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
..+=|+++|.+|+|||||.+.|....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 45679999999999999998776544
No 462
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=85.60 E-value=0.46 Score=43.87 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
+++-|+++|.+|+|||||..+|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999999874
No 463
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=85.58 E-value=0.49 Score=43.75 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=20.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
..+-|+++|.+|+|||||..+|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999998863
No 464
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=85.56 E-value=0.57 Score=44.33 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
...+-|+++|.+|+|||||..+|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 45677999999999999999988753
No 465
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=85.52 E-value=0.68 Score=50.04 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=33.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHh------hcCCceEEEechh
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLR------WLGHDTKHFNVGK 358 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~------~~g~~t~v~~~dd 358 (722)
.+++.++.|-.|+||||+|..||..|. ..|.++-++|.|-
T Consensus 108 ~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~ 153 (398)
T 3ez2_A 108 AYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP 153 (398)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence 445556669999999999999999997 3689999999873
No 466
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=85.52 E-value=0.43 Score=44.51 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=20.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
+.+-|+++|.+|+|||||..+|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999998873
No 467
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=85.50 E-value=0.43 Score=45.64 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=20.3
Q ss_pred CCccEEEEEEccCCCChHHHHHHHHHH
Q 004941 317 EHRHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 317 ~~~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
+.+.+=|+++|.+|+|||||.+.|...
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhc
Confidence 345667999999999999998876643
No 468
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.47 E-value=0.49 Score=44.74 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLR 345 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~ 345 (722)
+.+++|-.|||||||.++|.-.|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 889999999999999999986654
No 469
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.46 E-value=0.49 Score=49.07 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=26.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 356 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~~g~~t~v~~~ 356 (722)
+++++|.+|+|||++++.+++.+.. ...+++.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~ 63 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNL---PYIYLDL 63 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEc
Confidence 8999999999999999999988642 3445654
No 470
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.42 E-value=0.51 Score=43.88 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
..+-|+++|.+|+|||||..+|..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 356799999999999999999874
No 471
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.39 E-value=0.5 Score=56.52 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 004941 322 AIVLVGLPARGKTFTAAKLTRYLRW 346 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~~L~~ 346 (722)
-++|+|-||+||||+|+.|++.+..
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4689999999999999999999843
No 472
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=85.34 E-value=0.51 Score=53.42 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
...+|.++|++|.||||||++++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999996
No 473
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.33 E-value=0.38 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
-++.++|..|||||||.+.|+..+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 379999999999999999998543
No 474
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=85.29 E-value=0.29 Score=52.24 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=23.3
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 348 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~L~~~g 348 (722)
+.+.|++-|.-|+||||+++.|+++|...+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 457899999999999999999999987665
No 475
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=85.24 E-value=0.41 Score=46.02 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.4
Q ss_pred CccEEEEEEccCCCChHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLT 341 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La 341 (722)
...+-|+++|.||+|||||.++|.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999884
No 476
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.24 E-value=0.45 Score=48.36 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=20.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
-++.++|..|||||||.+.|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999864
No 477
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=85.24 E-value=0.42 Score=45.26 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=21.2
Q ss_pred CccEEEEEEccCCCChHHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
.+.+-|+++|.+|+|||||..+|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999988744
No 478
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=85.05 E-value=0.48 Score=45.76 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=20.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
+.+-|+++|.+|+|||||..+|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998754
No 479
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.04 E-value=0.73 Score=50.66 Aligned_cols=28 Identities=25% Similarity=0.155 Sum_probs=24.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYLRWL 347 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L~~~ 347 (722)
.-+|+++|-.||||||+.+.|...+...
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 4489999999999999999999887644
No 480
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=85.03 E-value=0.54 Score=44.14 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
+++-|+++|.+|+|||||..+|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 567899999999999999998863
No 481
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=85.02 E-value=0.45 Score=44.57 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.6
Q ss_pred EEEEEccCCCChHHHHHHHHH
Q 004941 322 AIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 322 lIvlvGLPGSGKSTlAr~La~ 342 (722)
-|+++|.+|+|||||..+|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999998874
No 482
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=85.02 E-value=0.55 Score=43.90 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..+-|+++|.+|+|||||..+|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999998743
No 483
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=84.95 E-value=0.48 Score=47.92 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 004941 320 HLAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 320 ~~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
.-++.++|-.|||||||.+.|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4489999999999999999998654
No 484
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.81 E-value=0.41 Score=48.62 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
-++.++|-.|||||||.+.|+..+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999998654
No 485
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=84.72 E-value=0.42 Score=49.05 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=21.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
-++.++|..|||||||.+.|+..+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998554
No 486
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=84.66 E-value=0.55 Score=44.42 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=20.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
..+.-|+++|.+|+|||||..+|..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3566799999999999999998863
No 487
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=84.62 E-value=0.61 Score=44.60 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=20.9
Q ss_pred CccEEEEEEccCCCChHHHHHHHHH
Q 004941 318 HRHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 318 ~~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
...+-|+++|.+|+|||||..+|..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4567899999999999999999864
No 488
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=84.58 E-value=0.64 Score=43.26 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=20.8
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
+.+-|+++|.+|+|||||..+|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 356799999999999999998874
No 489
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=84.58 E-value=0.57 Score=45.08 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=19.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLT 341 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La 341 (722)
++.-|+++|.+|+|||||.++|.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34568999999999999999886
No 490
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=84.57 E-value=0.67 Score=44.06 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..+-|+++|.+|+|||||..+|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999888743
No 491
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=84.48 E-value=0.53 Score=44.91 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.9
Q ss_pred ccEEEEEEccCCCChHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTR 342 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~ 342 (722)
++.-|+++|.||+|||||.++|..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999999875
No 492
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=84.43 E-value=0.62 Score=44.43 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..+-|+++|.+|+|||||..+|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999998754
No 493
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.38 E-value=0.45 Score=48.09 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
-++.++|..|||||||.+.|+..+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998543
No 494
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=84.38 E-value=0.44 Score=49.39 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=21.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
-++.++|-.|||||||.+.|+..+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999999998654
No 495
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=84.37 E-value=0.6 Score=43.94 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
.++-|+++|.+|+|||||..+|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567999999999999999998753
No 496
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=84.31 E-value=0.52 Score=48.46 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
-++.++|-.|||||||.+.|+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999864
No 497
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=84.25 E-value=0.71 Score=43.50 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..+-|+++|.+|+|||||..+|...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999998753
No 498
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.20 E-value=0.68 Score=44.08 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCChHHHHHHHHHH
Q 004941 319 RHLAIVLVGLPARGKTFTAAKLTRY 343 (722)
Q Consensus 319 ~~~lIvlvGLPGSGKSTlAr~La~~ 343 (722)
..+=|+++|.+|+|||||..+|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999998753
No 499
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=84.19 E-value=0.46 Score=48.53 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
-++.++|..|||||||.+.|+..+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998654
No 500
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=84.17 E-value=0.46 Score=48.91 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHHH
Q 004941 321 LAIVLVGLPARGKTFTAAKLTRYL 344 (722)
Q Consensus 321 ~lIvlvGLPGSGKSTlAr~La~~L 344 (722)
-++.++|..|||||||.+.|+..+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 478999999999999999998544
Done!