BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004942
         (722 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558
          Length = 394

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 4/109 (3%)

Query: 598 LSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA 657
           L ++ ++   +L+      VA L + +D+ ++ S+   E+FG V +EAMA GVP +GT  
Sbjct: 259 LVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCIGTRV 316

Query: 658 GGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRK 706
           GG  E+++H  TG L   G      +A     LLK+  +   M    R+
Sbjct: 317 GGIPEVIQHGDTGYLCEVGDTTG--VADQAIQLLKDEELHRNMGERARE 363


>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
          Length = 414

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 4/109 (3%)

Query: 598 LSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA 657
           L ++ ++   +L+      VA L + +D+ ++ S+   E+FG V +EAMA GVP +GT  
Sbjct: 279 LVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCIGTRV 336

Query: 658 GGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRK 706
           GG  E+++H  TG L   G      +A     LLK+  +   M    R+
Sbjct: 337 GGIPEVIQHGDTGYLCEVGDTTG--VADQAIQLLKDEELHRNMGERARE 383


>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
           First Step In Mycothiol Biosynthesis. Organism :
           Corynebacterium Glutamicum- Complex With Udp
 pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
           First Step In Mycothiol Biosynthesis. Organism :
           Corynebacterium Glutamicum- Complex With Udp
 pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum : Complex With Udp And
           1l-Ins-1- P.
 pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum : Complex With Udp And
           1l-Ins-1- P
          Length = 426

 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 10/89 (11%)

Query: 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLL-- 672
           + + ++Y AAD+  + S    E+FG V +EA A G PV+    GG    V    TGLL  
Sbjct: 297 SELVAVYRAADIVAVPS--FNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVD 354

Query: 673 -HPPGHPGAQVLAQNLRYLLKNPSVRERM 700
            H P H  A  LA     LL +   R RM
Sbjct: 355 GHSP-HAWADALAT----LLDDDETRIRM 378


>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum- Apo (Open) Structure.
 pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum- Apo (Open) Structure
          Length = 438

 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 10/89 (11%)

Query: 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLL-- 672
           + + ++Y AAD+  + S    E+FG V +EA A G PV+    GG    V    TGLL  
Sbjct: 317 SELVAVYRAADIVAVPS--FNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVD 374

Query: 673 -HPPGHPGAQVLAQNLRYLLKNPSVRERM 700
            H P H  A  LA     LL +   R RM
Sbjct: 375 GHSP-HAWADALAT----LLDDDETRIRM 398


>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshi
 pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshi
 pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshi Produced By Soaking In Trehalose
 pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshi Produced By Soaking In Trehalose
          Length = 416

 Score = 42.4 bits (98), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 9/108 (8%)

Query: 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPG 676
           V +   A+DV  I    + E FG    EAM  G PV+G   GG K  +    TG L    
Sbjct: 309 VNAFQRASDV--ILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRDA 366

Query: 677 HPGAQVLAQNLRYLLKNPSVRERMAMEG--RKKSNGLAERHSLGRYCN 722
           +   +V+     YLLK+P V + M  +   R + N +  +H + RY +
Sbjct: 367 NEAVEVVL----YLLKHPEVSKEMGAKAKERVRKNFIITKH-MERYLD 409


>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
           Pyrococcus Abyssi
          Length = 200

 Score = 42.4 bits (98), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 8/138 (5%)

Query: 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQH 601
           F  IG  D    G   L + +   S  K+ Q ++ +I  +G    ++      LE   +H
Sbjct: 39  FMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFII--IGKGDPELEGWARSLE--EKH 94

Query: 602 SNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTK 661
            N+ K +    +   V  LY + D  +I S    E FG V +EAM  G   + +  GG +
Sbjct: 95  GNV-KVITEMLSREFVRELYGSVDFVIIPSYF--EPFGLVALEAMCLGAIPIASAVGGLR 151

Query: 662 EIVEHNVTGLLHPPGHPG 679
           +I+  N TG+L   G PG
Sbjct: 152 DII-TNETGILVKAGDPG 168


>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications
          Length = 816

 Score = 42.0 bits (97), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 8/77 (10%)

Query: 627 YVINSQG------LGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGH--P 678
           Y+ +++G      L E FG   +EAM  G+P   T  GG  EI+ H  +G    P H   
Sbjct: 660 YICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQ 719

Query: 679 GAQVLAQNLRYLLKNPS 695
            A  LA       ++PS
Sbjct: 720 AADTLADFFTKCKEDPS 736


>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
 pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
 pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
          Length = 439

 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 8/138 (5%)

Query: 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQH 601
           F  IG  D    G   L + +   S  K+ Q ++ +I  +G    ++      LE   +H
Sbjct: 254 FMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFII--IGKGDPELEGWARSLE--EKH 309

Query: 602 SNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTK 661
            N+ K +    +   V  LY + D  +I S    E FG V +EAM  G   + +  GG +
Sbjct: 310 GNV-KVITEMLSREFVRELYGSVDFVIIPSYF--EPFGLVALEAMCLGAIPIASAVGGLR 366

Query: 662 EIVEHNVTGLLHPPGHPG 679
           +I+  N TG+L   G PG
Sbjct: 367 DIIT-NETGILVKAGDPG 383


>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
           Pyrococcus Abyssi
 pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
           Pyrococcus Abyssi
          Length = 428

 Score = 40.8 bits (94), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 8/138 (5%)

Query: 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQH 601
           F  IG  D    G   L + +   S  K+ Q ++ +I  +G    ++      LE   +H
Sbjct: 254 FMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFII--IGKGDPELEGWARSLE--EKH 309

Query: 602 SNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTK 661
            N+ K +    +   V  LY + D  +I S    E FG V +EAM  G   + +  GG +
Sbjct: 310 GNV-KVITEMLSREFVRELYGSVDFVIIPSYF--EPFGLVALEAMCLGAIPIASAVGGLR 366

Query: 662 EIVEHNVTGLLHPPGHPG 679
           +I+  N TG+L   G PG
Sbjct: 367 DIIT-NETGILVKAGDPG 383


>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
 pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
 pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
          Length = 440

 Score = 40.8 bits (94), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 8/138 (5%)

Query: 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQH 601
           F  IG  D    G   L + +   S  K+ Q ++ +I  +G    ++      LE   +H
Sbjct: 255 FMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFII--IGKGDPELEGWARSLE--EKH 310

Query: 602 SNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTK 661
            N+ K +    +   V  LY + D  +I S    E FG V +EAM  G   + +  GG +
Sbjct: 311 GNV-KVITEMLSREFVRELYGSVDFVIIPSYF--EPFGLVALEAMCLGAIPIASAVGGLR 367

Query: 662 EIVEHNVTGLLHPPGHPG 679
           +I+  N TG+L   G PG
Sbjct: 368 DIIT-NETGILVKAGDPG 384


>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horishiki In Complex With Udp
 pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horishiki In Complex With Udp
 pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horikoshii In Complex With Udpg
 pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horikoshii In Complex With Udpg
 pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horikoshii In Complex With Udpg
 pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horikoshii In Complex With Udpg
          Length = 416

 Score = 40.0 bits (92), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 9/108 (8%)

Query: 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPG 676
           V +   A+DV +  S   G  FG    EAM  G PV+G   GG K  +    TG L    
Sbjct: 309 VNAFQRASDVILQMSIRAG--FGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRDA 366

Query: 677 HPGAQVLAQNLRYLLKNPSVRERMAMEG--RKKSNGLAERHSLGRYCN 722
           +   +V+     YLLK+P V + M  +   R + N +  +H + RY +
Sbjct: 367 NEAVEVVL----YLLKHPEVSKEMGAKAKERVRKNFIITKH-MERYLD 409


>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications
          Length = 816

 Score = 39.7 bits (91), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 627 YVINSQG------LGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGH--P 678
           Y+ +++G      L E FG   +EA   G+P   T  GG  EI+ H  +G    P H   
Sbjct: 660 YICDTKGAFVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQ 719

Query: 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKK 707
            A  LA       ++PS  + ++  G ++
Sbjct: 720 AADTLADFFTKCKEDPSHWDEISKGGLQR 748


>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
           Halothermothrix Orenii
 pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
           Of Halothermothrix Orenii
 pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
           Of Halothermothrix Orenii
          Length = 499

 Score = 37.7 bits (86), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 618 ASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGH 677
           A L S   V+ + S    E FG   +EAMA G+P + T  GG  EI++    G+L  P  
Sbjct: 353 AYLASKGSVFALTS--FYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPED 410

Query: 678 P 678
           P
Sbjct: 411 P 411


>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
           Mannosyltransferase (Pima) From Mycobacterium Smegmatis
           In Complex With Gdp-Man
 pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
           Mannosyltransferase (Pima) From Mycobacterium Smegmatis
           In Complex With Gdp
          Length = 406

 Score = 36.6 bits (83), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 12/80 (15%)

Query: 595 LEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLG 654
           L FL Q  + +KA           S   +ADVY     G GE+FG V +EAMA G  V+ 
Sbjct: 265 LRFLGQVDDATKA-----------SAMRSADVYCAPHLG-GESFGIVLVEAMAAGTAVVA 312

Query: 655 TDAGGTKEIVEHNVTGLLHP 674
           +D    + ++     G L P
Sbjct: 313 SDLDAFRRVLADGDAGRLVP 332


>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshii (Seleno Derivative)
 pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshii (Seleno Derivative)
          Length = 416

 Score = 36.2 bits (82), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPG 676
           V +   A+DV  I    + E FG    EA   G PV+G   GG K  +    TG L    
Sbjct: 309 VNAFQRASDV--ILQXSIREGFGLTVTEAXWKGKPVIGRAVGGIKFQIVDGETGFLVRDA 366

Query: 677 HPGAQVLAQNLRYLLKNPSVRERMAMEG--RKKSNGLAERHSLGRYCN 722
           +   +V+     YLLK+P V +    +   R + N +  +H   RY +
Sbjct: 367 NEAVEVVL----YLLKHPEVSKEXGAKAKERVRKNFIITKHX-ERYLD 409


>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
           (Wbaz-1)from Archaeoglobus Fulgidus, Northeast
           Structural Genomics Target Gr29a
          Length = 177

 Score = 34.3 bits (77), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 21/37 (56%)

Query: 636 ETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLL 672
           E FG   IEA A G PV+  + GG KE V +  TG L
Sbjct: 108 EDFGLTPIEAXASGKPVIAVNEGGFKETVINEKTGYL 144


>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
           Complex With Gdp-Man (Triclinic Crystal Form)
 pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
           Complex With Gdp-Man (Triclinic Crystal Form)
          Length = 381

 Score = 33.5 bits (75), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 622 SAADVYVINSQGLG-----ETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLL 672
           +AAD++ + ++  G     E  G V +EA A GVPV+   +GG  E V    TGL+
Sbjct: 271 AAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVT-PATGLV 325


>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
           Bound To Gdp (Orthorhombic Crystal Form)
 pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
           Bound To Gdp-Man (Orthorhombic Crystal Form)
          Length = 394

 Score = 33.1 bits (74), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 622 SAADVYVINSQGLG-----ETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLL 672
           +AAD++ + ++  G     E  G V +EA A GVPV+   +GG  E V    TGL+
Sbjct: 271 AAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVT-PATGLV 325


>pdb|3OY2|A Chain A, Crystal Structure Of A Putative Glycosyltransferase From
           Paramecium Bursaria Chlorella Virus Ny2a
 pdb|3OY2|B Chain B, Crystal Structure Of A Putative Glycosyltransferase From
           Paramecium Bursaria Chlorella Virus Ny2a
 pdb|3OY7|A Chain A, Crystal Structure Of A Virus Encoded Glycosyltransferase
           In Complex With Gdp-Mannose
 pdb|3OY7|B Chain B, Crystal Structure Of A Virus Encoded Glycosyltransferase
           In Complex With Gdp-Mannose
          Length = 413

 Score = 31.6 bits (70), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 602 SNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG 659
           ++L+K M+     T  RV  +Y+A DV V  S G  E FG  + E    G P++ +  GG
Sbjct: 250 THLNKIMINRTVLTDERVDMMYNACDVIVNCSSG--EGFGLCSAEGAVLGKPLIISAVGG 307

Query: 660 TKEIVEHNVTGLLHP 674
             +    +    + P
Sbjct: 308 ADDYFSGDCVYKIKP 322


>pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
           From Aeropyrum Pernix K1
          Length = 297

 Score = 31.2 bits (69), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 579 GSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAAD----VYVINSQGL 634
           G  GS+ + VP    + E L++H  ++ ++++ PA     ++Y A D    + V+ ++G+
Sbjct: 47  GKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGI 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,836,585
Number of Sequences: 62578
Number of extensions: 707417
Number of successful extensions: 1924
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1907
Number of HSP's gapped (non-prelim): 26
length of query: 722
length of database: 14,973,337
effective HSP length: 106
effective length of query: 616
effective length of database: 8,340,069
effective search space: 5137482504
effective search space used: 5137482504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)