Query 004942
Match_columns 722
No_of_seqs 207 out of 2770
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 15:27:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0853 Glycosyltransferase [C 100.0 3.3E-40 7E-45 365.4 18.0 448 172-720 6-461 (495)
2 TIGR03088 stp2 sugar transfera 100.0 1.2E-36 2.6E-41 321.9 37.4 346 243-721 2-367 (374)
3 cd03807 GT1_WbnK_like This fam 100.0 9.2E-34 2E-38 286.8 35.3 340 244-721 1-361 (365)
4 cd04962 GT1_like_5 This family 100.0 1.1E-33 2.5E-38 295.6 34.1 336 244-721 2-365 (371)
5 cd03812 GT1_CapH_like This fam 100.0 8.5E-34 1.8E-38 294.0 32.5 329 244-712 1-350 (358)
6 cd03819 GT1_WavL_like This fam 100.0 6.3E-33 1.4E-37 287.2 36.5 335 248-714 3-353 (355)
7 PRK15179 Vi polysaccharide bio 100.0 3.3E-33 7.1E-38 324.0 37.1 347 244-721 283-688 (694)
8 cd03805 GT1_ALG2_like This fam 100.0 3.5E-33 7.5E-38 295.8 32.7 349 243-720 1-392 (392)
9 PLN02871 UDP-sulfoquinovose:DA 100.0 1.8E-32 3.8E-37 303.0 37.4 333 240-721 56-428 (465)
10 TIGR03449 mycothiol_MshA UDP-N 100.0 1.8E-32 3.8E-37 293.7 35.5 331 254-721 19-396 (405)
11 TIGR02472 sucr_P_syn_N sucrose 100.0 1.5E-32 3.2E-37 301.9 34.7 348 253-721 24-435 (439)
12 PRK10307 putative glycosyl tra 100.0 5E-32 1.1E-36 292.6 36.0 340 243-721 1-402 (412)
13 cd03796 GT1_PIG-A_like This fa 100.0 2.5E-32 5.5E-37 294.4 32.8 332 244-721 1-362 (398)
14 cd04951 GT1_WbdM_like This fam 100.0 1.7E-31 3.6E-36 275.9 37.0 337 244-721 1-355 (360)
15 cd03820 GT1_amsD_like This fam 100.0 2.5E-31 5.5E-36 266.6 34.5 325 244-722 1-348 (348)
16 cd03818 GT1_ExpC_like This fam 100.0 1.2E-31 2.7E-36 288.5 34.6 340 244-722 1-396 (396)
17 cd03792 GT1_Trehalose_phosphor 100.0 2.9E-31 6.3E-36 282.6 33.3 337 244-721 1-366 (372)
18 PRK15427 colanic acid biosynth 100.0 5.1E-31 1.1E-35 288.0 34.4 334 244-721 2-400 (406)
19 cd03800 GT1_Sucrose_synthase T 100.0 1.1E-30 2.3E-35 274.6 34.1 338 253-722 19-398 (398)
20 PRK15490 Vi polysaccharide bio 100.0 2E-30 4.3E-35 292.4 36.6 344 243-722 162-571 (578)
21 cd03821 GT1_Bme6_like This fam 100.0 3.9E-30 8.4E-35 261.4 35.4 336 244-722 1-375 (375)
22 PRK15484 lipopolysaccharide 1, 100.0 2.4E-30 5.2E-35 279.5 34.6 325 253-721 19-372 (380)
23 cd03811 GT1_WabH_like This fam 100.0 3E-30 6.4E-35 258.7 32.7 326 244-710 1-349 (353)
24 PRK09922 UDP-D-galactose:(gluc 100.0 1.3E-30 2.9E-35 277.4 30.6 326 243-718 1-351 (359)
25 cd03795 GT1_like_4 This family 100.0 1E-29 2.2E-34 262.3 35.3 329 244-716 1-356 (357)
26 cd03808 GT1_cap1E_like This fa 100.0 7.9E-30 1.7E-34 256.9 33.2 331 244-722 1-359 (359)
27 TIGR02149 glgA_Coryne glycogen 100.0 1.7E-29 3.7E-34 267.3 36.5 336 244-721 2-381 (388)
28 cd03814 GT1_like_2 This family 100.0 9.7E-30 2.1E-34 260.1 32.5 328 244-721 1-360 (364)
29 PRK00654 glgA glycogen synthas 100.0 2.6E-30 5.6E-35 286.7 30.5 352 243-721 1-457 (466)
30 cd05844 GT1_like_7 Glycosyltra 100.0 9.7E-30 2.1E-34 265.7 32.8 328 245-722 2-366 (367)
31 PLN02316 synthase/transferase 100.0 1.1E-29 2.5E-34 301.9 36.3 352 242-721 587-1028(1036)
32 cd03822 GT1_ecORF704_like This 100.0 3.8E-29 8.3E-34 256.5 34.6 341 244-721 1-362 (366)
33 cd03825 GT1_wcfI_like This fam 100.0 5.1E-29 1.1E-33 257.9 34.5 317 243-721 1-359 (365)
34 TIGR02468 sucrsPsyn_pln sucros 100.0 2.8E-29 6.1E-34 298.1 36.7 357 253-721 193-665 (1050)
35 TIGR02095 glgA glycogen/starch 100.0 1.9E-29 4.1E-34 279.2 32.5 353 243-721 1-467 (473)
36 cd03794 GT1_wbuB_like This fam 100.0 5.9E-29 1.3E-33 253.0 33.3 338 244-721 1-394 (394)
37 cd03817 GT1_UGDG_like This fam 100.0 2.1E-28 4.5E-33 249.3 36.8 333 244-718 1-368 (374)
38 PRK14099 glycogen synthase; Pr 100.0 4.3E-29 9.3E-34 279.8 34.6 355 240-721 1-473 (485)
39 cd03802 GT1_AviGT4_like This f 100.0 3.7E-29 8E-34 257.1 30.2 310 243-722 1-332 (335)
40 cd03801 GT1_YqgM_like This fam 100.0 2.4E-28 5.1E-33 244.8 34.8 337 244-721 1-370 (374)
41 cd03799 GT1_amsK_like This is 100.0 7.6E-29 1.7E-33 255.6 31.8 330 244-719 1-354 (355)
42 cd03791 GT1_Glycogen_synthase_ 100.0 3.9E-29 8.4E-34 275.0 31.5 353 244-722 1-472 (476)
43 cd03816 GT1_ALG1_like This fam 100.0 1.6E-28 3.6E-33 268.3 35.6 345 243-719 4-409 (415)
44 cd04955 GT1_like_6 This family 100.0 2E-28 4.3E-33 253.8 34.4 328 244-721 1-359 (363)
45 TIGR02470 sucr_synth sucrose s 100.0 4.2E-28 9.1E-33 282.9 37.3 379 236-721 249-742 (784)
46 PLN02939 transferase, transfer 100.0 4.3E-28 9.3E-33 284.9 37.0 355 243-721 482-961 (977)
47 cd03823 GT1_ExpE7_like This fa 100.0 7E-28 1.5E-32 245.3 33.5 323 244-721 1-354 (359)
48 cd03809 GT1_mtfB_like This fam 100.0 2.6E-28 5.6E-33 250.3 29.4 333 244-722 1-365 (365)
49 cd03798 GT1_wlbH_like This fam 100.0 4.1E-27 8.9E-32 237.5 33.1 335 245-721 1-371 (377)
50 cd03806 GT1_ALG11_like This fa 100.0 3.8E-27 8.3E-32 258.6 33.0 334 244-716 2-416 (419)
51 PRK10125 putative glycosyl tra 100.0 2.6E-27 5.7E-32 259.5 31.7 318 243-722 1-400 (405)
52 PRK14098 glycogen synthase; Pr 100.0 3.7E-27 8.1E-32 264.4 33.3 353 243-721 6-480 (489)
53 cd03813 GT1_like_3 This family 100.0 2.5E-27 5.4E-32 263.5 28.0 270 310-721 172-471 (475)
54 PLN00142 sucrose synthase 100.0 6.2E-27 1.3E-31 273.5 30.2 218 404-721 521-765 (815)
55 PLN02949 transferase, transfer 100.0 2.6E-26 5.7E-31 256.3 32.7 339 242-721 33-451 (463)
56 TIGR03087 stp1 sugar transfera 100.0 3.5E-26 7.5E-31 246.7 30.3 325 245-721 1-391 (397)
57 PLN02846 digalactosyldiacylgly 100.0 1.8E-26 4E-31 257.2 29.0 322 241-721 3-386 (462)
58 cd04949 GT1_gtfA_like This fam 100.0 1.7E-26 3.7E-31 244.0 26.0 262 310-720 98-372 (372)
59 TIGR02918 accessory Sec system 99.9 7.3E-26 1.6E-30 254.9 29.1 220 359-721 268-494 (500)
60 cd03804 GT1_wbaZ_like This fam 99.9 1.3E-25 2.8E-30 236.0 27.1 198 359-720 151-350 (351)
61 cd04946 GT1_AmsK_like This fam 99.9 5.5E-25 1.2E-29 240.1 30.4 223 357-722 179-407 (407)
62 PLN02275 transferase, transfer 99.9 2.7E-24 5.9E-29 231.5 29.7 310 253-691 13-371 (371)
63 KOG1111 N-acetylglucosaminyltr 99.9 4E-25 8.6E-30 235.2 19.3 302 244-692 2-334 (426)
64 PLN02501 digalactosyldiacylgly 99.9 9.4E-24 2E-28 241.6 29.6 321 242-721 322-704 (794)
65 PHA01630 putative group 1 glyc 99.9 2.6E-23 5.7E-28 222.9 28.2 214 359-721 92-325 (331)
66 PRK00726 murG undecaprenyldiph 99.9 3.1E-22 6.7E-27 212.3 28.8 318 243-721 2-352 (357)
67 cd03785 GT1_MurG MurG is an N- 99.9 7.9E-22 1.7E-26 206.9 28.6 313 249-718 4-349 (350)
68 PF00534 Glycos_transf_1: Glyc 99.9 6.1E-23 1.3E-27 194.8 17.7 168 430-707 2-172 (172)
69 PHA01633 putative glycosyl tra 99.9 2.4E-22 5.2E-27 216.5 23.8 223 358-722 89-335 (335)
70 PRK05749 3-deoxy-D-manno-octul 99.9 2.8E-21 6E-26 210.8 31.5 335 247-711 53-406 (425)
71 cd03788 GT1_TPS Trehalose-6-Ph 99.9 7.9E-22 1.7E-26 219.8 24.5 302 311-721 131-456 (460)
72 TIGR01133 murG undecaprenyldip 99.9 5.6E-21 1.2E-25 200.3 28.5 311 244-718 2-346 (348)
73 TIGR02400 trehalose_OtsA alpha 99.9 1.1E-20 2.4E-25 210.9 29.5 253 362-721 184-451 (456)
74 PRK13609 diacylglycerol glucos 99.8 4.6E-18 1E-22 182.5 27.6 324 241-721 3-366 (380)
75 cd03793 GT1_Glycogen_synthase_ 99.8 3.5E-18 7.5E-23 193.9 26.6 127 591-721 428-581 (590)
76 PLN03063 alpha,alpha-trehalose 99.8 1.9E-18 4.2E-23 204.4 24.4 255 361-721 203-472 (797)
77 cd01635 Glycosyltransferase_GT 99.8 9.6E-18 2.1E-22 160.7 20.2 118 448-673 109-229 (229)
78 PRK14501 putative bifunctional 99.8 1.1E-17 2.4E-22 196.2 24.0 252 362-721 190-457 (726)
79 PLN02605 monogalactosyldiacylg 99.8 2.1E-17 4.5E-22 179.0 23.6 215 360-720 149-375 (382)
80 PRK13608 diacylglycerol glucos 99.7 2.3E-16 4.9E-21 171.9 23.5 108 604-721 254-366 (391)
81 COG0438 RfaG Glycosyltransfera 99.7 3.1E-16 6.6E-21 154.0 20.8 192 405-721 174-371 (381)
82 COG0297 GlgA Glycogen synthase 99.7 1.6E-15 3.4E-20 170.6 28.5 207 403-722 241-473 (487)
83 cd04950 GT1_like_1 Glycosyltra 99.7 9.4E-16 2E-20 165.4 24.0 107 606-721 254-366 (373)
84 PRK00025 lpxB lipid-A-disaccha 99.7 1.5E-15 3.2E-20 162.4 23.3 86 615-709 253-357 (380)
85 TIGR02398 gluc_glyc_Psyn gluco 99.7 1.5E-14 3.2E-19 163.1 27.1 255 362-721 189-477 (487)
86 TIGR00236 wecB UDP-N-acetylglu 99.6 1.4E-13 3E-18 147.5 24.3 105 603-718 252-359 (365)
87 PLN03064 alpha,alpha-trehalose 99.6 5.6E-13 1.2E-17 159.3 27.5 259 362-721 288-556 (934)
88 cd03786 GT1_UDP-GlcNAc_2-Epime 99.6 2E-13 4.4E-18 144.5 21.4 292 261-701 15-345 (363)
89 PF13692 Glyco_trans_1_4: Glyc 99.5 2E-14 4.4E-19 131.5 9.6 132 444-693 3-135 (135)
90 KOG1387 Glycosyltransferase [C 99.5 8.4E-13 1.8E-17 141.1 21.1 128 586-720 318-452 (465)
91 PRK09814 beta-1,6-galactofuran 99.5 7.4E-12 1.6E-16 133.8 27.1 102 606-714 207-319 (333)
92 TIGR00215 lpxB lipid-A-disacch 99.4 5E-11 1.1E-15 130.5 28.5 302 253-711 13-369 (385)
93 TIGR03713 acc_sec_asp1 accesso 99.4 1.2E-12 2.6E-17 149.0 15.7 106 606-721 409-516 (519)
94 KOG2941 Beta-1,4-mannosyltrans 99.3 3.2E-09 7E-14 114.2 26.9 176 439-720 251-435 (444)
95 PF13524 Glyco_trans_1_2: Glyc 99.2 4.6E-11 9.9E-16 104.3 10.6 90 627-722 2-92 (92)
96 TIGR02094 more_P_ylases alpha- 99.2 2E-09 4.3E-14 124.8 21.2 182 439-722 385-596 (601)
97 PF00982 Glyco_transf_20: Glyc 99.0 1.2E-08 2.5E-13 115.5 20.2 261 362-721 198-469 (474)
98 PRK12446 undecaprenyldiphospho 99.0 8.3E-08 1.8E-12 104.4 25.9 85 609-699 237-331 (352)
99 TIGR02919 accessory Sec system 99.0 4.1E-08 8.8E-13 110.2 20.4 98 605-709 328-427 (438)
100 COG0707 MurG UDP-N-acetylgluco 98.9 3.1E-07 6.7E-12 100.8 26.0 106 608-719 237-350 (357)
101 PRK10117 trehalose-6-phosphate 98.9 1.4E-08 3.1E-13 114.5 14.8 257 362-721 180-448 (474)
102 PLN02205 alpha,alpha-trehalose 98.9 4.2E-07 9.1E-12 109.4 25.4 262 362-721 258-546 (854)
103 COG1519 KdtA 3-deoxy-D-manno-o 98.8 4.8E-06 1E-10 92.4 29.3 334 246-710 51-403 (419)
104 cd04299 GT1_Glycogen_Phosphory 98.7 2.7E-07 5.8E-12 109.8 18.0 188 439-722 474-685 (778)
105 TIGR03590 PseG pseudaminic aci 98.7 1.6E-06 3.6E-11 91.4 20.7 76 244-319 1-88 (279)
106 PF13439 Glyco_transf_4: Glyco 98.7 1.7E-07 3.6E-12 87.3 11.6 144 248-418 5-177 (177)
107 PF05693 Glycogen_syn: Glycoge 98.7 1.6E-06 3.6E-11 99.7 20.9 128 591-721 423-576 (633)
108 COG0380 OtsA Trehalose-6-phosp 98.6 4.8E-06 1E-10 94.5 23.9 258 362-721 204-474 (486)
109 cd03784 GT1_Gtf_like This fami 98.5 3.7E-05 8.1E-10 83.4 26.4 95 603-705 285-383 (401)
110 TIGR03492 conserved hypothetic 98.4 3.5E-05 7.5E-10 85.5 21.1 103 607-718 280-390 (396)
111 PF13528 Glyco_trans_1_3: Glyc 98.4 6.9E-05 1.5E-09 78.7 22.4 80 605-690 231-317 (318)
112 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 0.00064 1.4E-08 74.7 28.2 82 606-700 262-345 (365)
113 PF13579 Glyco_trans_4_4: Glyc 98.1 1.4E-05 3E-10 73.2 8.8 117 255-375 1-143 (160)
114 TIGR01426 MGT glycosyltransfer 97.9 0.00031 6.8E-09 76.5 16.8 94 604-704 273-370 (392)
115 PF04007 DUF354: Protein of un 97.8 0.0065 1.4E-07 66.7 24.3 74 608-692 233-309 (335)
116 PF02684 LpxB: Lipid-A-disacch 97.8 0.0071 1.5E-07 67.3 24.2 84 615-708 252-355 (373)
117 COG0381 WecB UDP-N-acetylgluco 97.5 0.025 5.5E-07 63.0 23.5 90 603-703 259-351 (383)
118 PRK01021 lpxB lipid-A-disaccha 97.5 0.014 3.1E-07 68.4 21.9 87 617-711 482-589 (608)
119 COG1819 Glycosyl transferases, 97.4 0.014 3.1E-07 65.3 20.6 98 603-707 281-382 (406)
120 COG0763 LpxB Lipid A disacchar 97.3 0.033 7.3E-07 61.9 21.9 83 616-708 257-359 (381)
121 PF13477 Glyco_trans_4_2: Glyc 97.3 0.0028 6.1E-08 58.5 11.4 95 244-346 1-108 (139)
122 PF13844 Glyco_transf_41: Glyc 97.3 0.0048 1E-07 70.4 14.7 100 603-709 338-446 (468)
123 COG3980 spsG Spore coat polysa 97.1 0.08 1.7E-06 57.1 20.7 92 606-706 210-306 (318)
124 PF04101 Glyco_tran_28_C: Glyc 97.1 0.00024 5.2E-09 68.6 1.7 93 606-704 55-155 (167)
125 PF02350 Epimerase_2: UDP-N-ac 97.0 0.034 7.4E-07 61.0 17.4 83 607-701 240-326 (346)
126 COG4671 Predicted glycosyl tra 96.8 0.26 5.6E-06 54.7 21.8 82 606-694 277-366 (400)
127 COG4641 Uncharacterized protei 96.5 0.057 1.2E-06 59.9 14.9 92 615-710 249-344 (373)
128 PF07429 Glyco_transf_56: 4-al 96.5 0.31 6.6E-06 54.0 20.2 103 586-692 226-332 (360)
129 PHA03392 egt ecdysteroid UDP-g 96.4 0.073 1.6E-06 61.4 15.9 99 603-708 343-447 (507)
130 COG1817 Uncharacterized protei 96.4 0.48 1E-05 51.9 20.5 69 616-695 245-316 (346)
131 KOG3742 Glycogen synthase [Car 95.8 0.18 3.8E-06 57.3 14.4 103 615-720 492-606 (692)
132 COG3914 Spy Predicted O-linked 95.6 1.1 2.3E-05 52.6 20.1 266 239-655 256-537 (620)
133 PRK02797 4-alpha-L-fucosyltran 95.4 1.4 3E-05 48.4 19.0 97 585-685 186-286 (322)
134 PRK14986 glycogen phosphorylas 95.2 0.39 8.5E-06 58.4 15.3 76 601-676 615-696 (815)
135 PF04464 Glyphos_transf: CDP-G 95.1 0.66 1.4E-05 50.5 15.7 94 603-708 249-351 (369)
136 PF09314 DUF1972: Domain of un 95.0 0.55 1.2E-05 47.8 13.9 61 243-304 2-65 (185)
137 COG3660 Predicted nucleoside-d 94.9 2.2 4.7E-05 46.1 18.0 59 597-660 215-276 (329)
138 PF00343 Phosphorylase: Carboh 94.7 1.8 3.9E-05 52.2 19.0 75 600-674 515-595 (713)
139 cd04300 GT1_Glycogen_Phosphory 94.7 0.61 1.3E-05 56.7 15.2 77 600-676 601-683 (797)
140 TIGR00661 MJ1255 conserved hyp 94.5 0.12 2.6E-06 55.4 7.9 82 604-694 227-315 (321)
141 PF00201 UDPGT: UDP-glucoronos 94.3 0.4 8.8E-06 54.2 12.1 90 606-700 323-416 (500)
142 TIGR02093 P_ylase glycogen/sta 94.3 0.41 8.9E-06 58.0 12.6 77 600-676 598-680 (794)
143 PRK14985 maltodextrin phosphor 93.9 0.47 1E-05 57.5 12.1 77 600-676 600-682 (798)
144 PF06258 Mito_fiss_Elm1: Mitoc 93.6 11 0.00024 41.2 21.1 49 606-659 209-259 (311)
145 COG0058 GlgP Glucan phosphoryl 93.1 3 6.5E-05 50.6 16.9 75 603-677 554-632 (750)
146 KOG1050 Trehalose-6-phosphate 90.0 4.1 8.8E-05 49.6 13.6 199 400-700 236-447 (732)
147 PLN02448 UDP-glycosyltransfera 88.0 2.5 5.4E-05 48.3 9.7 69 639-707 351-430 (459)
148 PLN02670 transferase, transfer 87.9 1.1 2.4E-05 51.6 6.8 94 619-717 351-452 (472)
149 PLN02410 UDP-glucoronosyl/UDP- 87.7 1.2 2.7E-05 50.8 7.1 66 640-707 353-423 (451)
150 PLN02562 UDP-glycosyltransfera 87.1 2.4 5.3E-05 48.3 8.9 90 606-702 328-422 (448)
151 PF03033 Glyco_transf_28: Glyc 86.6 2.3 5E-05 39.3 7.0 45 256-303 9-54 (139)
152 PLN03004 UDP-glycosyltransfera 86.2 3.2 7E-05 47.6 9.3 77 619-699 346-430 (451)
153 TIGR02195 heptsyl_trn_II lipop 85.7 6.8 0.00015 42.1 11.1 40 609-655 235-276 (334)
154 PLN02208 glycosyltransferase f 84.8 2.3 5E-05 48.5 7.3 85 619-707 323-416 (442)
155 PLN02210 UDP-glucosyl transfer 84.3 4.2 9.1E-05 46.6 9.1 73 619-695 336-417 (456)
156 PLN02554 UDP-glycosyltransfera 84.0 5 0.00011 46.2 9.5 61 639-699 370-447 (481)
157 PLN00414 glycosyltransferase f 83.3 4.9 0.00011 46.0 9.0 85 619-709 324-419 (446)
158 PLN02764 glycosyltransferase f 82.0 4.2 9.1E-05 46.8 7.9 84 619-708 329-423 (453)
159 PRK14089 ipid-A-disaccharide s 81.9 3 6.4E-05 46.3 6.4 34 616-656 228-261 (347)
160 PRK10964 ADP-heptose:LPS hepto 81.8 38 0.00083 36.3 14.7 43 607-656 235-279 (322)
161 PLN02173 UDP-glucosyl transfer 81.3 5.8 0.00012 45.6 8.7 96 606-707 317-421 (449)
162 PLN03007 UDP-glucosyltransfera 81.3 11 0.00023 43.6 10.8 84 606-694 345-441 (482)
163 PLN02555 limonoid glucosyltran 80.9 6.9 0.00015 45.3 9.2 68 639-707 365-442 (480)
164 TIGR02193 heptsyl_trn_I lipopo 79.5 47 0.001 35.4 14.4 76 609-691 238-319 (319)
165 cd03789 GT1_LPS_heptosyltransf 79.1 14 0.0003 38.7 10.0 43 608-657 181-225 (279)
166 PF05159 Capsule_synth: Capsul 78.0 4.2 9.2E-05 42.6 5.8 43 607-657 183-226 (269)
167 PLN00164 glucosyltransferase; 77.6 5.7 0.00012 45.8 7.2 86 619-708 351-447 (480)
168 PLN02167 UDP-glycosyltransfera 74.1 10 0.00022 43.7 8.0 55 640-694 369-435 (475)
169 PF08323 Glyco_transf_5: Starc 73.8 6 0.00013 41.4 5.6 39 244-282 1-43 (245)
170 PRK10017 colanic acid biosynth 72.6 55 0.0012 37.5 13.2 78 615-699 319-398 (426)
171 PLN02152 indole-3-acetate beta 72.2 15 0.00033 42.2 8.8 73 619-695 339-419 (455)
172 PLN02863 UDP-glucoronosyl/UDP- 71.9 28 0.0006 40.4 10.8 86 607-699 344-440 (477)
173 PF03016 Exostosin: Exostosin 69.8 5 0.00011 42.0 4.0 69 615-687 228-299 (302)
174 PF01075 Glyco_transf_9: Glyco 69.5 26 0.00056 35.7 9.0 43 607-656 165-209 (247)
175 PLN02992 coniferyl-alcohol glu 69.1 12 0.00026 43.5 7.1 72 619-694 350-428 (481)
176 PF01975 SurE: Survival protei 69.0 9 0.0002 39.3 5.5 37 246-284 3-39 (196)
177 PRK10916 ADP-heptose:LPS hepto 68.2 76 0.0017 34.5 12.7 41 608-655 244-286 (348)
178 TIGR02201 heptsyl_trn_III lipo 65.0 89 0.0019 33.8 12.5 41 608-655 243-285 (344)
179 PRK10422 lipopolysaccharide co 64.9 46 0.00099 36.3 10.3 42 607-655 244-287 (352)
180 PF00862 Sucrose_synth: Sucros 64.4 1.1 2.5E-05 51.8 -2.3 42 502-543 509-550 (550)
181 PF11440 AGT: DNA alpha-glucos 62.6 2.5E+02 0.0055 31.2 15.9 192 256-470 2-210 (355)
182 PRK06988 putative formyltransf 60.9 19 0.00042 39.3 6.4 69 243-318 3-84 (312)
183 TIGR01470 cysG_Nterm siroheme 60.8 24 0.00053 36.2 6.8 69 241-319 8-77 (205)
184 CHL00073 chlN photochlorophyll 58.8 31 0.00068 40.0 7.9 76 236-318 308-398 (457)
185 COG0859 RfaF ADP-heptose:LPS h 56.4 68 0.0015 35.0 9.7 40 610-656 236-277 (334)
186 PF10087 DUF2325: Uncharacteri 55.8 38 0.00082 30.4 6.4 49 616-664 41-90 (97)
187 PF00070 Pyr_redox: Pyridine n 55.7 22 0.00048 30.3 4.7 46 256-301 6-61 (80)
188 PF10093 DUF2331: Uncharacteri 55.2 3.7E+02 0.008 30.7 19.2 44 607-657 245-290 (374)
189 TIGR01279 DPOR_bchN light-inde 55.1 22 0.00047 40.2 5.8 77 236-319 268-351 (407)
190 TIGR00460 fmt methionyl-tRNA f 54.4 41 0.00089 36.7 7.6 63 256-318 7-85 (313)
191 TIGR00661 MJ1255 conserved hyp 53.1 49 0.0011 35.5 7.9 25 254-279 8-34 (321)
192 PRK06718 precorrin-2 dehydroge 52.2 38 0.00082 34.7 6.5 70 240-319 8-78 (202)
193 PLN03015 UDP-glucosyl transfer 51.1 59 0.0013 37.8 8.6 53 640-692 364-425 (470)
194 COG1647 Esterase/lipase [Gener 50.9 26 0.00056 37.3 5.1 56 241-298 13-68 (243)
195 PF03853 YjeF_N: YjeF-related 50.8 54 0.0012 32.5 7.2 74 241-317 24-105 (169)
196 PRK05993 short chain dehydroge 50.7 57 0.0012 34.0 7.7 61 258-320 14-85 (277)
197 PRK01710 murD UDP-N-acetylmura 50.0 67 0.0014 36.6 8.7 79 235-322 7-88 (458)
198 PRK00005 fmt methionyl-tRNA fo 50.0 41 0.00089 36.6 6.7 62 256-317 7-84 (309)
199 PRK02842 light-independent pro 49.3 30 0.00065 39.3 5.8 76 238-320 286-369 (427)
200 TIGR02026 BchE magnesium-proto 49.2 49 0.0011 38.3 7.6 36 244-279 1-44 (497)
201 PRK06719 precorrin-2 dehydroge 49.0 60 0.0013 32.0 7.1 32 241-279 12-43 (157)
202 PLN02207 UDP-glycosyltransfera 48.6 44 0.00096 38.7 7.1 53 640-692 361-425 (468)
203 PF01012 ETF: Electron transfe 48.4 1.1E+02 0.0025 29.5 8.9 79 256-334 15-113 (164)
204 PLN02534 UDP-glycosyltransfera 47.2 70 0.0015 37.3 8.4 82 606-692 344-443 (491)
205 PRK14106 murD UDP-N-acetylmura 46.7 65 0.0014 36.2 7.9 72 241-321 4-78 (450)
206 PRK05562 precorrin-2 dehydroge 46.0 62 0.0013 34.1 7.0 69 242-319 25-93 (223)
207 COG0223 Fmt Methionyl-tRNA for 45.9 66 0.0014 35.5 7.5 63 256-318 8-86 (307)
208 COG2327 WcaK Polysaccharide py 45.6 1.4E+02 0.003 34.1 10.1 94 599-699 259-357 (385)
209 TIGR01081 mpl UDP-N-acetylmura 45.1 29 0.00064 39.3 4.9 69 250-322 3-71 (448)
210 KOG1192 UDP-glucuronosyl and U 44.8 72 0.0016 36.0 7.9 65 637-703 363-432 (496)
211 PRK10360 DNA-binding transcrip 44.3 2.3E+02 0.0051 26.8 10.4 66 624-692 48-117 (196)
212 COG0373 HemA Glutamyl-tRNA red 42.4 1.7E+02 0.0038 33.7 10.3 133 558-709 177-320 (414)
213 PF05221 AdoHcyase: S-adenosyl 41.3 55 0.0012 35.5 5.9 79 240-324 41-134 (268)
214 PLN00142 sucrose synthase 41.3 9.5 0.00021 47.0 0.3 77 505-581 519-595 (815)
215 TIGR01426 MGT glycosyltransfer 39.0 35 0.00077 37.4 4.2 39 261-302 12-50 (392)
216 KOG0780 Signal recognition par 39.0 78 0.0017 36.4 6.7 80 241-320 98-192 (483)
217 PLN02285 methionyl-tRNA formyl 38.3 88 0.0019 34.7 7.1 67 242-315 6-97 (334)
218 PRK08125 bifunctional UDP-gluc 38.0 85 0.0019 37.6 7.5 63 256-318 7-82 (660)
219 cd00401 AdoHcyase S-adenosyl-L 37.7 92 0.002 35.7 7.3 75 240-320 34-122 (413)
220 TIGR00682 lpxK tetraacyldisacc 37.5 95 0.002 34.2 7.1 34 246-279 30-65 (311)
221 PRK05476 S-adenosyl-L-homocyst 37.5 1.5E+02 0.0033 34.2 9.0 76 240-321 46-133 (425)
222 TIGR01283 nifE nitrogenase mol 35.9 1.2E+02 0.0025 34.9 7.8 77 236-319 320-403 (456)
223 cd01965 Nitrogenase_MoFe_beta_ 35.8 1.5E+02 0.0033 33.5 8.7 76 238-320 295-380 (428)
224 PRK06182 short chain dehydroge 35.8 1.2E+02 0.0026 31.3 7.3 59 260-320 15-83 (273)
225 PRK05647 purN phosphoribosylgl 35.6 1.5E+02 0.0032 30.6 7.8 55 261-315 15-84 (200)
226 cd01974 Nitrogenase_MoFe_beta 35.4 1.9E+02 0.0041 33.0 9.4 78 236-320 297-386 (435)
227 KOG1209 1-Acyl dihydroxyaceton 35.3 1.3E+02 0.0029 32.2 7.4 73 242-320 6-90 (289)
228 PRK01438 murD UDP-N-acetylmura 35.2 1.3E+02 0.0027 34.4 8.0 72 241-322 15-89 (480)
229 cd01979 Pchlide_reductase_N Pc 35.0 1.4E+02 0.0031 33.4 8.3 75 237-318 271-352 (396)
230 KOG1021 Acetylglucosaminyltran 35.0 2.1E+02 0.0045 33.2 9.7 58 615-674 335-395 (464)
231 COG0062 Uncharacterized conser 35.0 88 0.0019 32.6 6.0 46 242-290 49-94 (203)
232 PRK14478 nitrogenase molybdenu 34.9 52 0.0011 38.1 4.9 80 234-320 316-402 (475)
233 TIGR01862 N2-ase-Ialpha nitrog 34.6 50 0.0011 37.8 4.7 79 235-320 310-396 (443)
234 TIGR01285 nifN nitrogenase mol 34.6 76 0.0017 36.3 6.1 77 235-320 304-382 (432)
235 TIGR00639 PurN phosphoribosylg 34.3 1.1E+02 0.0025 31.1 6.7 58 260-317 13-85 (190)
236 PRK01906 tetraacyldisaccharide 33.6 1.4E+02 0.003 33.4 7.7 35 246-280 58-94 (338)
237 PF02606 LpxK: Tetraacyldisacc 33.3 1E+02 0.0022 34.1 6.6 36 246-281 37-74 (326)
238 TIGR01832 kduD 2-deoxy-D-gluco 32.8 1.1E+02 0.0024 30.8 6.3 64 257-320 14-89 (248)
239 PF04127 DFP: DNA / pantothena 32.7 99 0.0021 31.5 5.9 58 260-322 31-93 (185)
240 COG0569 TrkA K+ transport syst 32.7 2.4E+02 0.0052 29.3 8.9 87 256-344 7-100 (225)
241 PLN00016 RNA-binding protein; 32.6 2.3E+02 0.005 31.1 9.3 74 243-318 53-137 (378)
242 PRK06463 fabG 3-ketoacyl-(acyl 31.9 1.7E+02 0.0037 29.7 7.7 60 261-321 20-89 (255)
243 PRK00421 murC UDP-N-acetylmura 31.9 1.1E+02 0.0024 34.8 6.8 74 239-322 4-77 (461)
244 cd00316 Oxidoreductase_nitroge 31.9 77 0.0017 34.9 5.4 77 237-320 274-357 (399)
245 TIGR02470 sucr_synth sucrose s 31.8 17 0.00037 44.7 0.4 78 504-581 495-572 (784)
246 PF11071 DUF2872: Protein of u 31.0 1.8E+02 0.0038 28.8 6.9 37 617-656 66-107 (141)
247 cd03466 Nitrogenase_NifN_2 Nit 30.9 2.1E+02 0.0046 32.6 8.8 75 239-320 297-381 (429)
248 PRK02006 murD UDP-N-acetylmura 30.8 1.7E+02 0.0037 33.7 8.2 72 242-322 7-80 (498)
249 PF01408 GFO_IDH_MocA: Oxidore 30.0 1.4E+02 0.0031 26.7 6.0 40 615-656 52-93 (120)
250 TIGR00936 ahcY adenosylhomocys 29.9 2.3E+02 0.0051 32.5 8.9 76 240-321 30-116 (406)
251 cd01977 Nitrogenase_VFe_alpha 29.7 1.9E+02 0.0041 32.7 8.2 78 236-320 282-367 (415)
252 PF13614 AAA_31: AAA domain; P 28.9 1.5E+02 0.0032 27.9 6.1 45 244-288 1-45 (157)
253 PRK06483 dihydromonapterin red 28.9 2.8E+02 0.0061 27.7 8.5 46 256-302 10-55 (236)
254 COG2204 AtoC Response regulato 28.8 6.4E+02 0.014 29.6 12.2 87 607-696 30-125 (464)
255 TIGR02622 CDP_4_6_dhtase CDP-g 28.5 2.5E+02 0.0055 30.3 8.6 24 256-279 12-35 (349)
256 PRK10840 transcriptional regul 28.3 5.9E+02 0.013 25.2 11.4 75 615-692 39-125 (216)
257 PHA03392 egt ecdysteroid UDP-g 27.9 80 0.0017 36.9 4.9 37 243-281 21-58 (507)
258 cd01968 Nitrogenase_NifE_I Nit 27.6 2.1E+02 0.0045 32.3 8.0 79 235-320 280-365 (410)
259 COG1064 AdhP Zn-dependent alco 27.6 3.6E+02 0.0078 30.4 9.6 79 253-338 174-254 (339)
260 PRK06179 short chain dehydroge 27.1 1.9E+02 0.0042 29.6 7.1 72 241-321 2-83 (270)
261 PRK14477 bifunctional nitrogen 26.9 80 0.0017 39.7 4.9 79 234-320 312-398 (917)
262 PRK12429 3-hydroxybutyrate deh 26.7 1.2E+02 0.0027 30.4 5.5 24 256-279 12-35 (258)
263 COG0773 MurC UDP-N-acetylmuram 26.5 74 0.0016 37.1 4.2 67 250-322 11-77 (459)
264 PRK00652 lpxK tetraacyldisacch 26.4 1.9E+02 0.0041 32.1 7.2 34 246-279 51-86 (325)
265 PF10649 DUF2478: Protein of u 26.2 73 0.0016 32.0 3.6 42 617-658 86-132 (159)
266 PRK00048 dihydrodipicolinate r 25.8 3.2E+02 0.0069 28.9 8.5 44 615-660 52-95 (257)
267 TIGR03609 S_layer_CsaB polysac 25.7 8.1E+02 0.018 25.9 23.6 37 613-656 240-276 (298)
268 COG1648 CysG Siroheme synthase 25.7 1.1E+02 0.0024 31.8 5.0 69 241-318 11-79 (210)
269 COG3707 AmiR Response regulato 25.5 4.3E+02 0.0093 27.6 9.0 75 623-703 50-133 (194)
270 PF04230 PS_pyruv_trans: Polys 25.5 1E+02 0.0023 30.5 4.7 37 613-656 247-283 (286)
271 PRK13934 stationary phase surv 25.4 1.6E+02 0.0034 32.0 6.2 36 246-284 3-38 (266)
272 PF12965 DUF3854: Domain of un 25.3 3.1E+02 0.0067 26.5 7.6 63 233-295 58-127 (130)
273 COG0552 FtsY Signal recognitio 25.3 2.9E+02 0.0063 31.2 8.3 77 244-320 139-230 (340)
274 PRK06027 purU formyltetrahydro 25.3 1.1E+02 0.0024 33.2 5.1 72 239-316 86-170 (286)
275 TIGR00715 precor6x_red precorr 25.0 3.3E+02 0.0072 29.1 8.5 73 255-330 7-84 (256)
276 PRK13982 bifunctional SbtC-lik 24.8 1.3E+02 0.0028 35.3 5.7 59 258-321 282-344 (475)
277 COG0541 Ffh Signal recognition 24.8 2.3E+02 0.005 33.0 7.6 77 245-321 101-192 (451)
278 COG1152 CdhA CO dehydrogenase/ 24.7 94 0.002 37.3 4.6 85 550-657 226-332 (772)
279 PRK06849 hypothetical protein; 24.6 2.6E+02 0.0056 31.0 7.9 59 260-320 16-85 (389)
280 COG2120 Uncharacterized protei 24.5 3E+02 0.0066 28.9 8.0 40 239-283 7-49 (237)
281 smart00851 MGS MGS-like domain 24.5 1.6E+02 0.0036 25.8 5.2 54 261-319 2-63 (90)
282 PRK14573 bifunctional D-alanyl 24.4 1.8E+02 0.004 35.8 7.3 64 253-322 11-74 (809)
283 PLN00203 glutamyl-tRNA reducta 24.4 7.8E+02 0.017 29.2 12.1 140 559-710 266-416 (519)
284 PF15024 Glyco_transf_18: Glyc 24.3 1.5E+02 0.0032 35.4 6.1 86 603-694 319-431 (559)
285 TIGR01284 alt_nitrog_alph nitr 24.0 2.3E+02 0.005 32.7 7.6 78 236-320 319-404 (457)
286 COG1663 LpxK Tetraacyldisaccha 24.0 1.4E+02 0.003 33.5 5.5 37 246-282 49-87 (336)
287 PRK13811 orotate phosphoribosy 23.8 2.7E+02 0.0059 27.7 7.2 58 240-300 102-161 (170)
288 PF00148 Oxidored_nitro: Nitro 23.8 2.2E+02 0.0047 31.6 7.2 78 236-320 265-350 (398)
289 PF02254 TrkA_N: TrkA-N domain 23.7 1.8E+02 0.0039 26.0 5.4 62 256-319 5-70 (116)
290 PRK09620 hypothetical protein; 23.6 1.4E+02 0.003 31.4 5.2 18 262-279 33-50 (229)
291 PRK13011 formyltetrahydrofolat 23.5 2.6E+02 0.0056 30.5 7.5 69 243-317 90-171 (286)
292 PRK12742 oxidoreductase; Provi 23.3 2.4E+02 0.0053 28.0 6.8 61 258-319 16-83 (237)
293 TIGR01286 nifK nitrogenase mol 23.1 3.1E+02 0.0068 32.3 8.6 78 236-320 357-446 (515)
294 PRK10867 signal recognition pa 22.9 2.8E+02 0.006 32.1 7.9 78 243-321 100-193 (433)
295 TIGR01082 murC UDP-N-acetylmur 22.7 1.2E+02 0.0026 34.4 5.0 65 252-322 5-69 (448)
296 PRK12826 3-ketoacyl-(acyl-carr 22.7 2.3E+02 0.005 28.3 6.5 24 256-279 14-37 (251)
297 PRK09072 short chain dehydroge 22.6 2.7E+02 0.0058 28.5 7.1 25 255-279 12-36 (263)
298 cd01976 Nitrogenase_MoFe_alpha 22.6 1.2E+02 0.0025 34.6 4.9 78 236-320 294-378 (421)
299 PRK05693 short chain dehydroge 22.5 1.8E+02 0.004 29.9 5.9 58 261-320 14-81 (274)
300 TIGR01282 nifD nitrogenase mol 22.3 1.1E+02 0.0025 35.3 4.8 78 236-320 329-413 (466)
301 PF01113 DapB_N: Dihydrodipico 22.2 1.1E+02 0.0023 28.8 3.7 46 615-662 59-104 (124)
302 PF12017 Tnp_P_element: Transp 22.2 2.2E+02 0.0047 30.4 6.4 54 240-296 180-233 (236)
303 PF11169 DUF2956: Protein of u 22.2 43 0.00092 31.4 1.0 19 67-85 83-101 (103)
304 TIGR01861 ANFD nitrogenase iro 22.1 99 0.0021 36.4 4.2 78 236-320 322-407 (513)
305 PRK07231 fabG 3-ketoacyl-(acyl 22.1 2.5E+02 0.0054 28.0 6.7 22 258-279 15-36 (251)
306 smart00672 CAP10 Putative lipo 22.1 5.9E+02 0.013 27.2 9.7 74 637-711 156-232 (256)
307 PRK13932 stationary phase surv 22.0 2E+02 0.0043 31.1 6.1 37 243-283 6-42 (257)
308 PF01370 Epimerase: NAD depend 21.9 1.9E+02 0.004 28.6 5.6 67 254-321 4-75 (236)
309 cd01715 ETF_alpha The electron 21.9 5.6E+02 0.012 25.0 8.9 71 261-331 17-103 (168)
310 PRK12745 3-ketoacyl-(acyl-carr 21.9 3E+02 0.0065 27.7 7.2 31 244-279 3-33 (256)
311 PRK03803 murD UDP-N-acetylmura 21.8 3.4E+02 0.0073 30.7 8.3 65 253-322 13-79 (448)
312 PF12146 Hydrolase_4: Putative 21.8 2E+02 0.0044 25.0 5.2 36 242-279 15-50 (79)
313 PF13241 NAD_binding_7: Putati 21.8 2.5E+02 0.0054 25.4 6.0 63 241-319 6-68 (103)
314 COG0496 SurE Predicted acid ph 21.8 2E+02 0.0044 31.0 6.1 34 247-283 4-37 (252)
315 PRK04308 murD UDP-N-acetylmura 21.5 3.6E+02 0.0077 30.5 8.4 72 242-322 5-78 (445)
316 PRK01372 ddl D-alanine--D-alan 21.5 1.9E+02 0.0041 30.7 5.9 40 240-279 2-43 (304)
317 cd01020 TroA_b Metal binding p 21.2 2.3E+02 0.0049 30.0 6.4 90 617-711 46-137 (264)
318 PF02558 ApbA: Ketopantoate re 20.9 1.3E+02 0.0029 28.2 4.2 55 262-319 11-75 (151)
319 PRK05557 fabG 3-ketoacyl-(acyl 20.8 2.4E+02 0.0053 27.9 6.2 24 256-279 13-36 (248)
320 PRK06953 short chain dehydroge 20.7 2.1E+02 0.0045 28.5 5.8 63 256-320 9-79 (222)
321 PRK12481 2-deoxy-D-gluconate 3 20.5 2.1E+02 0.0045 29.3 5.8 31 244-279 9-39 (251)
322 PTZ00075 Adenosylhomocysteinas 20.0 4.2E+02 0.009 31.2 8.6 81 240-326 43-139 (476)
323 PRK08057 cobalt-precorrin-6x r 20.0 6.8E+02 0.015 26.7 9.6 65 261-329 14-83 (248)
No 1
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=3.3e-40 Score=365.40 Aligned_cols=448 Identities=24% Similarity=0.235 Sum_probs=368.3
Q ss_pred CCCCCCcccee-eEeeccchhhcCCCCCCCCceeEEEeccccchhhhhhcccccccccccCCCchhhhhccccEEEEEeC
Q 004942 172 RGKGRGKQKAK-LDVESNYMEAQLPEIPMTNASYGLLVGPFGLTEDRILEWSPEKRSGTCDRKGDFARFVWSRKFILIFH 250 (722)
Q Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kkillI~h 250 (722)
....+-.||.. ..++..+..++.|+.|..+.+|+--..++|..|++..+|++..++ .|| .-. ..+++++.++++.|
T Consensus 6 ~~~~~~~qk~~~~~m~~~~~~~~t~~~~~~~~~~~~~~~~~gg~er~~v~~~~~l~s-~~~-~lg-~~d~G~qV~~l~~h 82 (495)
T KOG0853|consen 6 SSNISELQKVLWKAMIEKSLLVSTPEKPFEHVTFIHPDLGIGGAERLVVDAAVHLLS-GQD-VLG-LPDTGGQVVYLTSH 82 (495)
T ss_pred hhHHHHhhhhhhhhhhhhhcccccccccchhheeeccccccCchHHHhHHHHHHHHh-ccc-ccC-CCCCCceEEEEehh
Confidence 34455566664 333344444788999999999999999999999999999999998 777 444 77899999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHh-CCCEEEEEEEcCCCC--ChhHHHhCCcEEEEcCCccchhhhcCccEEEECCchhhHhHH
Q 004942 251 ELSMTGAPLSMMELATELLS-CGATVSAVVLSKRGG--LMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVCATWID 327 (722)
Q Consensus 251 els~gGaplsm~eLA~eL~s-~G~~VsvV~ls~~g~--l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~Sav~~~wi~ 327 (722)
+.+.+ +|++++.++..|.. ++..|....+.+..+ +.......++.++.+++...++..++.|++|++++.|..|+.
T Consensus 83 ~~al~-~~~~~~~~~~~l~~~~~i~vv~~~lP~~~~~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~~~~~~l~ 161 (495)
T KOG0853|consen 83 EDALE-MPLLLRCFAETLDGTPPILVVGDWLPRAMGQFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDFVSACVPLL 161 (495)
T ss_pred hhhhc-chHHHHHHHHHhcCCCceEEEEeecCcccchhhhhhhccceeEEEEeccchhhhhhhhhceeecchHHHHHHHH
Confidence 99999 99999999999876 777777777666553 566677899999999998888888999999999999999999
Q ss_pred HHHHhccCCCccEEEEEecchhHhHHH--HHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceE
Q 004942 328 QYITRFPAGGSQVVWWIMENRREYFDR--AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFV 405 (722)
Q Consensus 328 ~~i~~~~~g~~~ivw~I~e~r~~yf~~--~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v 405 (722)
+++.+ |...+++.||+|+++..++.+ ....+.+...-..-++.+..+|++|+.+.++...+++.+++++++++
T Consensus 162 ~~~~~-p~~~~~i~~~~h~~~~lla~r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~---- 236 (495)
T KOG0853|consen 162 KQLSG-PDVIIKIYFYCHFPDSLLAKRLGVLKVLYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFVSLSNSDI---- 236 (495)
T ss_pred HHhcC-CcccceeEEeccchHHHhccccCccceeehhhhhhhhhhhhhccceEecchhhhhhhhhhhhhhcCCCCc----
Confidence 99988 888899999999999999987 33444455555566777778899999999999999999999999986
Q ss_pred EeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccc
Q 004942 406 AGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRN 485 (722)
Q Consensus 406 ~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~ 485 (722)
.+.+.++|...+.+ ++.+++..++..+|...+....++++..+.++.|+||++++++++..+....++
T Consensus 237 ~~~y~ei~~s~~~~-~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~----------- 304 (495)
T KOG0853|consen 237 TSTYPEIDGSWFTY-GQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPE----------- 304 (495)
T ss_pred ceeeccccchhccc-cccccchhcccccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCC-----------
Confidence 66667788877766 344455556788888899998899999999999999999999999988665443
Q ss_pred cccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEc
Q 004942 486 VGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSK 565 (722)
Q Consensus 486 ~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~ 565 (722)
+...+.||.+++..
T Consensus 305 ----------------------------------------------------------~~~~~~hl~~~g~~-------- 318 (495)
T KOG0853|consen 305 ----------------------------------------------------------PSISSEHLVVAGSR-------- 318 (495)
T ss_pred ----------------------------------------------------------CCCCceEEEEecCC--------
Confidence 11223344444432
Q ss_pred CCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCC-CCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHH
Q 004942 566 SDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNL-SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIE 644 (722)
Q Consensus 566 G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L-~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLE 644 (722)
+..+..++...|++++.+++.+. ++ .+.|.|+..+++...|+.+||+.+..++.-.|+||+|+||
T Consensus 319 -------------G~d~~~sen~~~~~el~~lie~~-~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IE 384 (495)
T KOG0853|consen 319 -------------GYDERDSENVEYLKELLSLIEEY-DLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIE 384 (495)
T ss_pred -------------CccccchhhHHHHHHHHHHHHHh-CccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHH
Confidence 13344567889999999988766 66 5778887888888888888887666666557999999999
Q ss_pred HHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh-hcHHHHHHHH
Q 004942 645 AMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNG-LAERHSLGRY 720 (722)
Q Consensus 645 AMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~-~~~~~~~~~Y 720 (722)
|||||+|||+|++||+.|||.++.+|++++++..++..+|+++.++.+||++|.+|+++|++++++ |+|....++.
T Consensus 385 AMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~~~~~ri 461 (495)
T KOG0853|consen 385 AMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRVKEMFSWQHYSERI 461 (495)
T ss_pred HHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999999999966545579999999999999999999999999988 8887776664
No 2
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=1.2e-36 Score=321.91 Aligned_cols=346 Identities=20% Similarity=0.296 Sum_probs=262.6
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-----------chhhhcC
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-----------SFKTSMK 311 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-----------~~~~~~k 311 (722)
++|++|.+.+..||++.++++|+++|.+.|+++.++++...+.+..++.+.|++++..+... ++.++.+
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~ 81 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLLRQLR 81 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEeCCCCCCChHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999987766777778888999998876432 2334789
Q ss_pred ccEEEECCchhhHhHHHHHHhccCCCccEEEEEe-----cchh-HhH-HHHH-hhhccccEEEEecHHhHHHHhhHHHhh
Q 004942 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIM-----ENRR-EYF-DRAK-LVLDRVKLLVFLSESQTKQWLTWCEEE 383 (722)
Q Consensus 312 ~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~-----e~r~-~yf-~~~k-~~l~rvk~li~lS~~~~~~~~~~~~~~ 383 (722)
||+||+++.. .+...+.+.. .+.+..++..| .... .+. .... ......+.++++|+...+. +..
T Consensus 82 ~Divh~~~~~--~~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~----~~~- 153 (374)
T TIGR03088 82 PDIVHTRNLA--ALEAQLPAAL-AGVPARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDW----LRG- 153 (374)
T ss_pred CCEEEEcchh--HHHHHHHHHh-cCCCeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHH----HHH-
Confidence 9999998642 2222222222 23332222111 1000 010 1111 1122367789999886332 210
Q ss_pred hhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHH
Q 004942 384 KLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVE 463 (722)
Q Consensus 384 ~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~Lle 463 (722)
..+..+ ..+.+||||+|++.|.+.... +...+++...+++.++|+++||+.+.||++.|++
T Consensus 154 --~~~~~~-----------~~~~vi~ngvd~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~ 214 (374)
T TIGR03088 154 --PVKVPP-----------AKIHQIYNGVDTERFHPSRGD------RSPILPPDFFADESVVVGTVGRLQAVKDQPTLVR 214 (374)
T ss_pred --hcCCCh-----------hhEEEeccCccccccCCCccc------hhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHH
Confidence 111111 124789999999888665321 1223344445667889999999999999999999
Q ss_pred HHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCccc
Q 004942 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (722)
Q Consensus 464 A~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (722)
|+..+.++.+..
T Consensus 215 a~~~l~~~~~~~-------------------------------------------------------------------- 226 (374)
T TIGR03088 215 AFALLVRQLPEG-------------------------------------------------------------------- 226 (374)
T ss_pred HHHHHHHhCccc--------------------------------------------------------------------
Confidence 999998775531
Q ss_pred ccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHH
Q 004942 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSA 623 (722)
Q Consensus 544 ~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysa 623 (722)
....+|+++|+|+.++.++.++.. +++.+.|.|+|..+++.++|++
T Consensus 227 -------------~~~~~l~i~G~g~~~~~~~~~~~~---------------------~~~~~~v~~~g~~~~~~~~~~~ 272 (374)
T TIGR03088 227 -------------AERLRLVIVGDGPARGACEQMVRA---------------------AGLAHLVWLPGERDDVPALMQA 272 (374)
T ss_pred -------------ccceEEEEecCCchHHHHHHHHHH---------------------cCCcceEEEcCCcCCHHHHHHh
Confidence 123678999999888777766643 3778899999999999999999
Q ss_pred cCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHH
Q 004942 624 ADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAME 703 (722)
Q Consensus 624 ADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~ 703 (722)
||++|+||. .|+||++++||||||+|||+|+.||.+|+++++.+|++++++|+ ++++++|..+++|++.+++|+++
T Consensus 273 adi~v~pS~--~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~--~~la~~i~~l~~~~~~~~~~~~~ 348 (374)
T TIGR03088 273 LDLFVLPSL--AEGISNTILEAMASGLPVIATAVGGNPELVQHGVTGALVPPGDA--VALARALQPYVSDPAARRAHGAA 348 (374)
T ss_pred cCEEEeccc--cccCchHHHHHHHcCCCEEEcCCCCcHHHhcCCCceEEeCCCCH--HHHHHHHHHHHhCHHHHHHHHHH
Confidence 999999997 89999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHH-HhhcHHHHHHHHH
Q 004942 704 GRKKS-NGLAERHSLGRYC 721 (722)
Q Consensus 704 grk~v-e~~~~~~~~~~Y~ 721 (722)
+++.+ ++|+|+.++++|.
T Consensus 349 a~~~~~~~fs~~~~~~~~~ 367 (374)
T TIGR03088 349 GRARAEQQFSINAMVAAYA 367 (374)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 99998 4699999999885
No 3
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=9.2e-34 Score=286.83 Aligned_cols=340 Identities=25% Similarity=0.382 Sum_probs=262.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc------------chhhhcC
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP------------SFKTSMK 311 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~------------~~~~~~k 311 (722)
||+++++.++.||++..+.+|+++|.+.|++|.+++....+.+...+...|++++...... .+.+..+
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRRLR 80 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHHhcCCeEEEEecccccccHHHHHHHHHHHHhhC
Confidence 6899999999999999999999999999999999997766666677777799987765432 2333779
Q ss_pred ccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhH---hHHH-----HHhhhccccEEEEecHHhHHHHhhHHHhh
Q 004942 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE---YFDR-----AKLVLDRVKLLVFLSESQTKQWLTWCEEE 383 (722)
Q Consensus 312 ~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~---yf~~-----~k~~l~rvk~li~lS~~~~~~~~~~~~~~ 383 (722)
||+|+++.... .+...+.........++|.+|..... +... ........+.+++.|...... .
T Consensus 81 ~div~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~----~--- 151 (365)
T cd03807 81 PDVVHTWMYHA--DLYGGLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEY----H--- 151 (365)
T ss_pred CCEEEeccccc--cHHHHHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHH----H---
Confidence 99998875432 22222222222445578877653322 1111 112223356667777765332 1
Q ss_pred hhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHH
Q 004942 384 KLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVE 463 (722)
Q Consensus 384 ~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~Lle 463 (722)
...+... + .+.++|||+|.+.+.+.... ....+++++++++.+.|+++|++.+.||++.+++
T Consensus 152 -~~~~~~~-------~----~~~vi~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~ 213 (365)
T cd03807 152 -QAIGYPP-------K----KIVVIPNGVDTERFSPDLDA------RARLREELGLPEDTFLIGIVARLHPQKDHATLLR 213 (365)
T ss_pred -HHcCCCh-------h----heeEeCCCcCHHhcCCcccc------hHHHHHhcCCCCCCeEEEEecccchhcCHHHHHH
Confidence 1112211 1 24789999998887665431 2456788999888999999999999999999999
Q ss_pred HHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCccc
Q 004942 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (722)
Q Consensus 464 A~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (722)
++..+.++.++
T Consensus 214 a~~~l~~~~~~--------------------------------------------------------------------- 224 (365)
T cd03807 214 AAALLLKKFPN--------------------------------------------------------------------- 224 (365)
T ss_pred HHHHHHHhCCC---------------------------------------------------------------------
Confidence 99999776444
Q ss_pred ccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHH
Q 004942 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSA 623 (722)
Q Consensus 544 ~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysa 623 (722)
++++++|.|+....++.... +..++.++|.|+|.++++..+|+.
T Consensus 225 ----------------~~l~i~G~~~~~~~~~~~~~--------------------~~~~~~~~v~~~g~~~~~~~~~~~ 268 (365)
T cd03807 225 ----------------ARLLLVGDGPDRANLELLAL--------------------KELGLEDKVILLGERSDVPALLNA 268 (365)
T ss_pred ----------------eEEEEecCCcchhHHHHHHH--------------------HhcCCCceEEEccccccHHHHHHh
Confidence 56788888877666554442 133788899999999999999999
Q ss_pred cCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHH
Q 004942 624 ADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAME 703 (722)
Q Consensus 624 ADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~ 703 (722)
||++++||. .|++|++++|||+||+|||+++.||..|++.+ +|++++++|+ ++++++|..+++|++.+++++++
T Consensus 269 adi~v~ps~--~e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~--~g~~~~~~~~--~~l~~~i~~l~~~~~~~~~~~~~ 342 (365)
T cd03807 269 LDVFVLSSL--SEGFPNVLLEAMACGLPVVATDVGDNAELVGD--TGFLVPPGDP--EALAEAIEALLADPALRQALGEA 342 (365)
T ss_pred CCEEEeCCc--cccCCcHHHHHHhcCCCEEEcCCCChHHHhhc--CCEEeCCCCH--HHHHHHHHHHHhChHHHHHHHHH
Confidence 999999998 79999999999999999999999999999987 8999999888 99999999999999999999999
Q ss_pred HHHHHHh-hcHHHHHHHHH
Q 004942 704 GRKKSNG-LAERHSLGRYC 721 (722)
Q Consensus 704 grk~ve~-~~~~~~~~~Y~ 721 (722)
+++.+++ |+|+..+++|.
T Consensus 343 ~~~~~~~~~s~~~~~~~~~ 361 (365)
T cd03807 343 ARERIEENFSIEAMVEAYE 361 (365)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 9999965 99999999885
No 4
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.1e-33 Score=295.65 Aligned_cols=336 Identities=20% Similarity=0.274 Sum_probs=248.9
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc------------------c
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP------------------S 305 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~------------------~ 305 (722)
||+++++ -..||++..+.+||++|.+.||+|.+++...+.... ....++.+...+... +
T Consensus 2 ki~~~~~-p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (371)
T cd04962 2 KIGIVCY-PTYGGSGVVATELGKALARRGHEVHFITSSRPFRLD--EYSPNIFFHEVEVPQYPLFQYPPYDLALASKIAE 78 (371)
T ss_pred ceeEEEE-eCCCCccchHHHHHHHHHhcCCceEEEecCCCcchh--hhccCeEEEEecccccchhhcchhHHHHHHHHHH
Confidence 6777765 357999999999999999999999999854322111 122334433211110 2
Q ss_pred hhhhcCccEEEECCchhhHhHHHHHHhccC--CCccEEEEEecch-------hHhHHHHHhhhccccEEEEecHHhHHHH
Q 004942 306 FKTSMKADLVIAGSAVCATWIDQYITRFPA--GGSQVVWWIMENR-------REYFDRAKLVLDRVKLLVFLSESQTKQW 376 (722)
Q Consensus 306 ~~~~~k~DlVia~Sav~~~wi~~~i~~~~~--g~~~ivw~I~e~r-------~~yf~~~k~~l~rvk~li~lS~~~~~~~ 376 (722)
+....+||+||++...... +..++..... ...++++.+|... ..+....+..+.+++.++++|+.....
T Consensus 79 ~i~~~~~divh~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~- 156 (371)
T cd04962 79 VAKRYKLDLLHVHYAVPHA-VAAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSESLRQE- 156 (371)
T ss_pred HHhcCCccEEeecccCCcc-HHHHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcCHHHHHH-
Confidence 2336799999988543221 1222222111 1234666666321 111222234456688899999886332
Q ss_pred hhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCC
Q 004942 377 LTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGK 456 (722)
Q Consensus 377 ~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~K 456 (722)
. .+. ... . ..+.+||||+|...|.+... ...++++++.+++++++++|++.+.|
T Consensus 157 ---~----~~~-~~~-------~---~~i~vi~n~~~~~~~~~~~~--------~~~~~~~~~~~~~~~il~~g~l~~~K 210 (371)
T cd04962 157 ---T----YEL-FDI-------T---KEIEVIPNFVDEDRFRPKPD--------EALKRRLGAPEGEKVLIHISNFRPVK 210 (371)
T ss_pred ---H----HHh-cCC-------c---CCEEEecCCcCHhhcCCCch--------HHHHHhcCCCCCCeEEEEeccccccc
Confidence 1 111 111 1 13589999999887765442 34567889988899999999999999
Q ss_pred CHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccC
Q 004942 457 GQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNL 536 (722)
Q Consensus 457 g~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (722)
|++.+++++..+.++. .
T Consensus 211 ~~~~li~a~~~l~~~~-~-------------------------------------------------------------- 227 (371)
T cd04962 211 RIDDVIRIFAKVRKEV-P-------------------------------------------------------------- 227 (371)
T ss_pred CHHHHHHHHHHHHhcC-C--------------------------------------------------------------
Confidence 9999999999986541 1
Q ss_pred CCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhh
Q 004942 537 LSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTR 616 (722)
Q Consensus 537 ~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~d 616 (722)
.+++++|+|+..+.++.++.. +++.++|.|+|.+++
T Consensus 228 -----------------------~~l~i~G~g~~~~~~~~~~~~---------------------~~~~~~v~~~g~~~~ 263 (371)
T cd04962 228 -----------------------ARLLLVGDGPERSPAERLARE---------------------LGLQDDVLFLGKQDH 263 (371)
T ss_pred -----------------------ceEEEEcCCcCHHHHHHHHHH---------------------cCCCceEEEecCccc
Confidence 357888999877776665532 377789999999999
Q ss_pred HHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHH
Q 004942 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSV 696 (722)
Q Consensus 617 v~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~ 696 (722)
+.++|+.||++|+||. .|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+ ++++++|..+++||+.
T Consensus 264 ~~~~~~~~d~~v~ps~--~E~~~~~~~EAma~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~~--~~l~~~i~~l~~~~~~ 339 (371)
T cd04962 264 VEELLSIADLFLLPSE--KESFGLAALEAMACGVPVVASNAGGIPEVVKHGETGFLVDVGDV--EAMAEYALSLLEDDEL 339 (371)
T ss_pred HHHHHHhcCEEEeCCC--cCCCccHHHHHHHcCCCEEEeCCCCchhhhcCCCceEEcCCCCH--HHHHHHHHHHHhCHHH
Confidence 9999999999999997 89999999999999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHHH-HhhcHHHHHHHHH
Q 004942 697 RERMAMEGRKKS-NGLAERHSLGRYC 721 (722)
Q Consensus 697 r~~mg~~grk~v-e~~~~~~~~~~Y~ 721 (722)
+++|++++++.+ ++|+|+.++++|.
T Consensus 340 ~~~~~~~~~~~~~~~fs~~~~~~~~~ 365 (371)
T cd04962 340 WQEFSRAARNRAAERFDSERIVPQYE 365 (371)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999995 5699999999885
No 5
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=8.5e-34 Score=293.98 Aligned_cols=329 Identities=17% Similarity=0.152 Sum_probs=247.5
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCC-CChhHHHhCCcEEEEcCCcc-----------chhhhcC
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLMPELARRKIKVLEDRGEP-----------SFKTSMK 311 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g-~l~~el~~~gI~Vl~~~~~~-----------~~~~~~k 311 (722)
||+++++.+..||++..+.+++++|.+.||+|++++..... .+...+...|+.++..+... .+..+.+
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPARKKNPLKYFKKLYKLIKKNK 80 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHHcCCeEEEecCCCccHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999999999999999976654 24556677888887644332 2223689
Q ss_pred ccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhH---hHH-----H-HHhhhccccEEEEecHHhHHHHhhHHHh
Q 004942 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE---YFD-----R-AKLVLDRVKLLVFLSESQTKQWLTWCEE 382 (722)
Q Consensus 312 ~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~---yf~-----~-~k~~l~rvk~li~lS~~~~~~~~~~~~~ 382 (722)
||+||+++.. ..++...+... .+.+.++.+.|..... +.. . .......++.++++|+...+. .
T Consensus 81 ~Dvv~~~~~~-~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~----~-- 152 (358)
T cd03812 81 YDIVHVHGSS-ASGFILLAAKK-AGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKW----L-- 152 (358)
T ss_pred CCEEEEeCcc-hhHHHHHHHhh-CCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHH----H--
Confidence 9999998765 33333344333 3344444444432110 000 0 122234477788888775331 1
Q ss_pred hhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHH
Q 004942 383 EKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLV 462 (722)
Q Consensus 383 ~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~Ll 462 (722)
... ..+ ..+.+||||+|...+.+.... +.. +++.+..++++.|+++|++.+.||++.++
T Consensus 153 --~~~-~~~-----------~~~~vi~ngvd~~~~~~~~~~------~~~-~~~~~~~~~~~~i~~vGr~~~~Kg~~~li 211 (358)
T cd03812 153 --FGK-VKN-----------KKFKVIPNGIDLEKFIFNEEI------RKK-RRELGILEDKFVIGHVGRFSEQKNHEFLI 211 (358)
T ss_pred --HhC-CCc-----------ccEEEEeccCcHHHcCCCchh------hhH-HHHcCCCCCCEEEEEEeccccccChHHHH
Confidence 111 111 135899999999887654431 122 66778888899999999999999999999
Q ss_pred HHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcc
Q 004942 463 ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLF 542 (722)
Q Consensus 463 eA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (722)
+|+..+.++.++
T Consensus 212 ~a~~~l~~~~~~-------------------------------------------------------------------- 223 (358)
T cd03812 212 EIFAELLKKNPN-------------------------------------------------------------------- 223 (358)
T ss_pred HHHHHHHHhCCC--------------------------------------------------------------------
Confidence 999999877655
Q ss_pred cccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHH
Q 004942 543 TSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYS 622 (722)
Q Consensus 543 ~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lys 622 (722)
.+++++|+|+..+.++..+.. +++.++|.|+|..+++.++|+
T Consensus 224 -----------------~~l~ivG~g~~~~~~~~~~~~---------------------~~~~~~v~~~g~~~~~~~~~~ 265 (358)
T cd03812 224 -----------------AKLLLVGDGELEEEIKKKVKE---------------------LGLEDKVIFLGVRNDVPELLQ 265 (358)
T ss_pred -----------------eEEEEEeCCchHHHHHHHHHh---------------------cCCCCcEEEecccCCHHHHHH
Confidence 568899999888777766642 378889999999989999999
Q ss_pred HcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHH
Q 004942 623 AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAM 702 (722)
Q Consensus 623 aADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~ 702 (722)
.||++|+||. .|+||++++||||+|+|||+|+.||.+|++++ ..|++...+++ ++++++|.++++||+.+++++.
T Consensus 266 ~adi~v~ps~--~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~-~~~~~~~~~~~--~~~a~~i~~l~~~~~~~~~~~~ 340 (358)
T cd03812 266 AMDVFLFPSL--YEGLPLVLIEAQASGLPCILSDTITKEVDLTD-LVKFLSLDESP--EIWAEEILKLKSEDRRERSSES 340 (358)
T ss_pred hcCEEEeccc--ccCCCHHHHHHHHhCCCEEEEcCCchhhhhcc-CccEEeCCCCH--HHHHHHHHHHHhCcchhhhhhh
Confidence 9999999997 89999999999999999999999999999998 45666666666 9999999999999999999988
Q ss_pred HHHHHHHhhc
Q 004942 703 EGRKKSNGLA 712 (722)
Q Consensus 703 ~grk~ve~~~ 712 (722)
.+....+.+.
T Consensus 341 ~~~~~~~~~~ 350 (358)
T cd03812 341 IKKKGLDADD 350 (358)
T ss_pred hhhccchhhh
Confidence 8777665433
No 6
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=6.3e-33 Score=287.19 Aligned_cols=335 Identities=22% Similarity=0.296 Sum_probs=248.8
Q ss_pred EeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--------------chhhhcCcc
Q 004942 248 IFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--------------SFKTSMKAD 313 (722)
Q Consensus 248 I~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--------------~~~~~~k~D 313 (722)
|...++.||++..+.+||++|.+.||+|.+++. .+.....+...|++++..+... .+....+||
T Consensus 3 ~~~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d 80 (355)
T cd03819 3 VLPALESGGVERGTLELARALVERGHRSLVASA--GGRLVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKVD 80 (355)
T ss_pred cchhhccCcHHHHHHHHHHHHHHcCCEEEEEcC--CCchHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCCC
Confidence 447788999999999999999999999999983 3455566777888887655332 223368999
Q ss_pred EEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHHHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcc
Q 004942 314 LVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAV 393 (722)
Q Consensus 314 lVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~v 393 (722)
+||+++... .|...+.... .+ .++++.+|....... .....+.+.+.++++|+...+. +.. ..+...
T Consensus 81 ii~~~~~~~-~~~~~~~~~~-~~-~~~i~~~h~~~~~~~-~~~~~~~~~~~vi~~s~~~~~~----~~~---~~~~~~-- 147 (355)
T cd03819 81 IVHARSRAP-AWSAYLAARR-TR-PPFVTTVHGFYSVNF-RYNAIMARGDRVIAVSNFIADH----IRE---NYGVDP-- 147 (355)
T ss_pred EEEECCCch-hHHHHHHHHh-cC-CCEEEEeCCchhhHH-HHHHHHHhcCEEEEeCHHHHHH----HHH---hcCCCh--
Confidence 999987542 3433333322 23 346776764322111 2234455688899999886443 210 112111
Q ss_pred cccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCC
Q 004942 394 VPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEP 473 (722)
Q Consensus 394 v~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~ 473 (722)
..+.+||||+|++.|.+...... ....+|++++++++.++|+++|++.+.||++.+++++..+.+..+
T Consensus 148 ---------~k~~~i~ngi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~ 215 (355)
T cd03819 148 ---------DRIRVIPRGVDLDRFDPGAVPPE---RILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDP 215 (355)
T ss_pred ---------hhEEEecCCccccccCccccchH---HHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCC
Confidence 13589999999998866432111 113368888888889999999999999999999999999976544
Q ss_pred CCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCcccc
Q 004942 474 SMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSF 553 (722)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (722)
+
T Consensus 216 ~------------------------------------------------------------------------------- 216 (355)
T cd03819 216 D------------------------------------------------------------------------------- 216 (355)
T ss_pred C-------------------------------------------------------------------------------
Confidence 3
Q ss_pred CCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHHcCEEEEcCCC
Q 004942 554 GSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQG 633 (722)
Q Consensus 554 g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysaADv~V~pS~~ 633 (722)
.+++++|.|+..+.+...+ .+. .+.+++.++|.|+|..+++..+|++||++++||..
T Consensus 217 ------~~l~ivG~~~~~~~~~~~~----------------~~~-~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~ 273 (355)
T cd03819 217 ------VHLLIVGDAQGRRFYYAEL----------------LEL-IKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTE 273 (355)
T ss_pred ------eEEEEEECCcccchHHHHH----------------HHH-HHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCC
Confidence 4677788876554433222 222 23337888999999999999999999999999942
Q ss_pred CCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHh-h
Q 004942 634 LGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL-KNPSVRERMAMEGRKKSNG-L 711 (722)
Q Consensus 634 l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL-~np~~r~~mg~~grk~ve~-~ 711 (722)
.|+||++++||||||+|||+++.||..|++.++.+|++++++|+ ++++++|..++ .+++.+++|++++++.+++ |
T Consensus 274 -~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~--~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f 350 (355)
T cd03819 274 -PEAFGRTAVEAQAMGRPVIASDHGGARETVRPGETGLLVPPGDA--EALAQALDQILSLLPEGRAKMFAKARMCVETLF 350 (355)
T ss_pred -CCCCchHHHHHHhcCCCEEEcCCCCcHHHHhCCCceEEeCCCCH--HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999998 99999996554 5999999999999999976 5
Q ss_pred cHH
Q 004942 712 AER 714 (722)
Q Consensus 712 ~~~ 714 (722)
+++
T Consensus 351 ~~~ 353 (355)
T cd03819 351 SYD 353 (355)
T ss_pred hhc
Confidence 554
No 7
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=3.3e-33 Score=323.99 Aligned_cols=347 Identities=19% Similarity=0.182 Sum_probs=249.8
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCC------------EEEEEEE--c-CC--CCChhHHHhCCcEEEEcCCcc--
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGA------------TVSAVVL--S-KR--GGLMPELARRKIKVLEDRGEP-- 304 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~------------~VsvV~l--s-~~--g~l~~el~~~gI~Vl~~~~~~-- 304 (722)
||+++++++..|||+..+.+||.+|.+.++ .+.|++. . .. +.+..++...||+|..+....
T Consensus 283 rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~v~~l~~~~~~ 362 (694)
T PRK15179 283 PVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIPVSVYSDMQAW 362 (694)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCeEEEeccCCcc
Confidence 799999999999999999999999999965 3445543 2 22 346778889999998764321
Q ss_pred -------------------------------chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecc----hh
Q 004942 305 -------------------------------SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMEN----RR 349 (722)
Q Consensus 305 -------------------------------~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~----r~ 349 (722)
++.++.+||+||+++... .++ ..++....+.+.+++.+|.. ..
T Consensus 363 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a-~~l-g~lAa~~~gvPvIv~t~h~~~~~~~~ 440 (694)
T PRK15179 363 GGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGS-IFA-CALAALLAGVPRIVLSVRTMPPVDRP 440 (694)
T ss_pred CcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcH-HHH-HHHHHHHcCCCEEEEEeCCCccccch
Confidence 233477999999886543 222 23333333445333233311 00
Q ss_pred HhH----HHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHH
Q 004942 350 EYF----DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREK 425 (722)
Q Consensus 350 ~yf----~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ek 425 (722)
..+ ......+......++++.+.... ..+. ..++..+ ..+.+||||+|+..|.+.....+
T Consensus 441 ~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~~-~~l~----~~~g~~~-----------~kI~VI~NGVd~~~f~~~~~~~~ 504 (694)
T PRK15179 441 DRYRVEYDIIYSELLKMRGVALSSNSQFAA-HRYA----DWLGVDE-----------RRIPVVYNGLAPLKSVQDDACTA 504 (694)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEeCcHHHH-HHHH----HHcCCCh-----------hHEEEECCCcCHHhcCCCchhhH
Confidence 111 00111222344455555443211 0011 0122221 23589999999988865432111
Q ss_pred hhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccc
Q 004942 426 RNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLL 505 (722)
Q Consensus 426 r~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l 505 (722)
. +..+ ...++++.++|+++||+.+.||++.|++|+..+.++.++
T Consensus 505 ~---~~~~--~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~------------------------------- 548 (694)
T PRK15179 505 M---MAQF--DARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPK------------------------------- 548 (694)
T ss_pred H---HHhh--ccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcC-------------------------------
Confidence 0 0111 122455678999999999999999999999999876555
Q ss_pred cccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCC
Q 004942 506 QMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKS 585 (722)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~s 585 (722)
.+|+++|+|+.++.++.++...
T Consensus 549 ------------------------------------------------------~~LvIvG~G~~~~~L~~l~~~l---- 570 (694)
T PRK15179 549 ------------------------------------------------------VRFIMVGGGPLLESVREFAQRL---- 570 (694)
T ss_pred ------------------------------------------------------eEEEEEccCcchHHHHHHHHHc----
Confidence 5789999999888887777433
Q ss_pred CCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhc
Q 004942 586 NKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVE 665 (722)
Q Consensus 586 n~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe 665 (722)
++.++|.|+|.++++..+|+++|++|+||. .|+||++++||||||+|||+|++||++|+|.
T Consensus 571 -----------------gL~~~V~flG~~~dv~~ll~aaDv~VlpS~--~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~ 631 (694)
T PRK15179 571 -----------------GMGERILFTGLSRRVGYWLTQFNAFLLLSR--FEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQ 631 (694)
T ss_pred -----------------CCCCcEEEcCCcchHHHHHHhcCEEEeccc--cccchHHHHHHHHcCCeEEEECCCChHHHcc
Confidence 888999999999999999999999999997 8999999999999999999999999999999
Q ss_pred cCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH-hhcHHHHHHHHH
Q 004942 666 HNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSN-GLAERHSLGRYC 721 (722)
Q Consensus 666 ~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve-~~~~~~~~~~Y~ 721 (722)
++.+|++++++|.++++|+++|..++++......++++++++++ +|+|+.++++|.
T Consensus 632 dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~ 688 (694)
T PRK15179 632 EGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTV 688 (694)
T ss_pred CCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999998876679999999998877777788899999985 699999999885
No 8
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=3.5e-33 Score=295.81 Aligned_cols=349 Identities=17% Similarity=0.243 Sum_probs=243.7
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC-ChhHHHhCCcEEEEcCC----c-c------------
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMPELARRKIKVLEDRG----E-P------------ 304 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~-l~~el~~~gI~Vl~~~~----~-~------------ 304 (722)
+||+++.++++.||++.++.+||++|.++||+|+++|...... ...+....++++...+. . .
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLPRSIFGRFHILCAYLRM 80 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcchhccCCeeEEEEEeEEEcchhhHhHHHHHHHHHH
Confidence 4799999999999999999999999999999999999543221 12233233355443221 0 0
Q ss_pred ---c----hhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchh------Hh----HHH-----HHhhhccc
Q 004942 305 ---S----FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR------EY----FDR-----AKLVLDRV 362 (722)
Q Consensus 305 ---~----~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~------~y----f~~-----~k~~l~rv 362 (722)
. +....++|+||+++.....++ + ..... .++++++|.+.. .+ +.. .+..+..+
T Consensus 81 ~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~---~-~~~~~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~a 155 (392)
T cd03805 81 LYLALYLLLLPDEKYDVFIVDQVSACVPL---L-KLFSP-SKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLEEFTTGMA 155 (392)
T ss_pred HHHHHHHHhcccCCCCEEEEcCcchHHHH---H-HHhcC-CcEEEEEecChHHhcCCCcHHHHHHHHHHHHHHHHHhhCc
Confidence 0 133579999998864322222 1 22222 457777764321 01 110 01223457
Q ss_pred cEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCC
Q 004942 363 KLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQ 442 (722)
Q Consensus 363 k~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~ 442 (722)
+.+++.|+...+. +.. .++... .. .+.+||||+|.+.|.+.... ..++.....++
T Consensus 156 d~ii~~s~~~~~~----~~~---~~~~~~-------~~---~~~vi~n~vd~~~~~~~~~~--------~~~~~~~~~~~ 210 (392)
T cd03805 156 DKIVVNSNFTASV----FKK---TFPSLA-------KN---PREVVYPCVDTDSFESTSED--------PDPGLLIPKSG 210 (392)
T ss_pred eEEEEcChhHHHH----HHH---Hhcccc-------cC---CcceeCCCcCHHHcCccccc--------ccccccccCCC
Confidence 8888888876432 110 011111 01 12589999999888665431 12233445667
Q ss_pred CEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccc
Q 004942 443 DMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSS 522 (722)
Q Consensus 443 ~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~ 522 (722)
.++|+++|++.+.||++.+++|+..+.++.+.
T Consensus 211 ~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~------------------------------------------------ 242 (392)
T cd03805 211 KKTFLSINRFERKKNIALAIEAFAILKDKLAE------------------------------------------------ 242 (392)
T ss_pred ceEEEEEeeecccCChHHHHHHHHHHHhhccc------------------------------------------------
Confidence 88999999999999999999999999776411
Q ss_pred hhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcC
Q 004942 523 ESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHS 602 (722)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~ 602 (722)
...++|+++|+|+.+.. ....|..++.+.+.+.+
T Consensus 243 ----------------------------------~~~~~l~i~G~~~~~~~------------~~~~~~~~l~~~~~~~~ 276 (392)
T cd03805 243 ----------------------------------FKNVRLVIAGGYDPRVA------------ENVEYLEELQRLAEELL 276 (392)
T ss_pred ----------------------------------ccCeEEEEEcCCCCCCc------------hhHHHHHHHHHHHHHhc
Confidence 01156788888765310 11234444444444314
Q ss_pred CCCCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccH
Q 004942 603 NLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGA 680 (722)
Q Consensus 603 ~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~ 680 (722)
++.++|.|+|.+ +++..+|+.||++++||. .|+||++++||||||+|||+|+.||..|++.++.+|+++++ |+
T Consensus 277 ~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~--~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~-~~-- 351 (392)
T cd03805 277 LLEDQVIFLPSISDSQKELLLSSARALLYTPS--NEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEP-TP-- 351 (392)
T ss_pred CCCceEEEeCCCChHHHHHHHhhCeEEEECCC--cCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCC-CH--
Confidence 889999999987 567899999999999997 89999999999999999999999999999999999999975 66
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHH-hhcHHHHHHHH
Q 004942 681 QVLAQNLRYLLKNPSVRERMAMEGRKKSN-GLAERHSLGRY 720 (722)
Q Consensus 681 e~LA~aI~~LL~np~~r~~mg~~grk~ve-~~~~~~~~~~Y 720 (722)
++++++|..+++|++.+++|++++++.++ +|+|+.+++++
T Consensus 352 ~~~a~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 352 EEFAEAMLKLANDPDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 99999999999999999999999999985 48999887753
No 9
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=1.8e-32 Score=303.03 Aligned_cols=333 Identities=20% Similarity=0.273 Sum_probs=243.6
Q ss_pred ccccEEEEEeCCC---CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCc-------------
Q 004942 240 VWSRKFILIFHEL---SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE------------- 303 (722)
Q Consensus 240 ~~~kkillI~hel---s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~------------- 303 (722)
.+++||+++++.. ..||.+..+.+|+++|.+.||+|.+++..... ..+ ..|++++.....
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~--~~~--~~g~~v~~~~~~~~~~~~~~~~~~~ 131 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGV--PQE--FHGAKVIGSWSFPCPFYQKVPLSLA 131 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCC--Ccc--ccCceeeccCCcCCccCCCceeecc
Confidence 6668999997754 56999999999999999999999999954322 111 134444321110
Q ss_pred --c---chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHH-------------HHHhhhccccEE
Q 004942 304 --P---SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFD-------------RAKLVLDRVKLL 365 (722)
Q Consensus 304 --~---~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~-------------~~k~~l~rvk~l 365 (722)
. ++.++.+||+||+++.....|....++. ..+.+ ++..+|.....+.. ..+......+.+
T Consensus 132 ~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak-~~~ip-~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~i 209 (465)
T PLN02871 132 LSPRIISEVARFKPDLIHASSPGIMVFGALFYAK-LLCVP-LVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLT 209 (465)
T ss_pred CCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHH-HhCCC-EEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEE
Confidence 0 2334789999999874333333222233 23334 44444432111110 011223447788
Q ss_pred EEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhC-CCCCCE
Q 004942 366 VFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMG-LTDQDM 444 (722)
Q Consensus 366 i~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elg-l~~~~~ 444 (722)
++.|+...+. . ...+..+ ...+.+||||+|++.|.+.... ...++.+. ..++++
T Consensus 210 i~~S~~~~~~----l----~~~~~~~----------~~kv~vi~nGvd~~~f~p~~~~-------~~~~~~~~~~~~~~~ 264 (465)
T PLN02871 210 LVTSPALGKE----L----EAAGVTA----------ANRIRVWNKGVDSESFHPRFRS-------EEMRARLSGGEPEKP 264 (465)
T ss_pred EECCHHHHHH----H----HHcCCCC----------cCeEEEeCCccCccccCCcccc-------HHHHHHhcCCCCCCe
Confidence 8888875332 1 1111111 1235899999999998764321 23344443 334678
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchh
Q 004942 445 LVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSES 524 (722)
Q Consensus 445 lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~ 524 (722)
+|+|+|++.+.||++.|+++++.+ ++
T Consensus 265 ~i~~vGrl~~~K~~~~li~a~~~~----~~-------------------------------------------------- 290 (465)
T PLN02871 265 LIVYVGRLGAEKNLDFLKRVMERL----PG-------------------------------------------------- 290 (465)
T ss_pred EEEEeCCCchhhhHHHHHHHHHhC----CC--------------------------------------------------
Confidence 899999999999999999988765 22
Q ss_pred hhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCC
Q 004942 525 FTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNL 604 (722)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L 604 (722)
.+|+++|+|+.++.++.++. +
T Consensus 291 -----------------------------------~~l~ivG~G~~~~~l~~~~~-----------------------~- 311 (465)
T PLN02871 291 -----------------------------------ARLAFVGDGPYREELEKMFA-----------------------G- 311 (465)
T ss_pred -----------------------------------cEEEEEeCChHHHHHHHHhc-----------------------c-
Confidence 46889999998888877763 1
Q ss_pred CCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc---CccEEEECCCCcc
Q 004942 605 SKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH---NVTGLLHPPGHPG 679 (722)
Q Consensus 605 ~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~---g~tGlLvp~~d~~ 679 (722)
.+|.|+|.+ +++..+|++||++|+||. .|+||++++||||||+|||+++.||+.|++++ +.+|++++++|+
T Consensus 312 -~~V~f~G~v~~~ev~~~~~~aDv~V~pS~--~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d~- 387 (465)
T PLN02871 312 -TPTVFTGMLQGDELSQAYASGDVFVMPSE--SETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGDV- 387 (465)
T ss_pred -CCeEEeccCCHHHHHHHHHHCCEEEECCc--ccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCCH-
Confidence 269999987 789999999999999997 89999999999999999999999999999999 999999999998
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 680 ~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
++|+++|..+++|++.+++|++++++.+++|+|+.+++++.
T Consensus 388 -~~la~~i~~ll~~~~~~~~~~~~a~~~~~~fsw~~~a~~l~ 428 (465)
T PLN02871 388 -DDCVEKLETLLADPELRERMGAAAREEVEKWDWRAATRKLR 428 (465)
T ss_pred -HHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999998874
No 10
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=1.8e-32 Score=293.67 Aligned_cols=331 Identities=21% Similarity=0.265 Sum_probs=242.0
Q ss_pred CCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhH-HHhCCcEEEEcCCcc----------------------chhh--
Q 004942 254 MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE-LARRKIKVLEDRGEP----------------------SFKT-- 308 (722)
Q Consensus 254 ~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~e-l~~~gI~Vl~~~~~~----------------------~~~~-- 308 (722)
.||++.++.+||++|.++||+|+++|.......... -...|++++..+... .+..
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHE 98 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 699999999999999999999999996533221111 124688887653110 0111
Q ss_pred hcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchh---Hh----------HHH--HHhhhccccEEEEecHHhH
Q 004942 309 SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR---EY----------FDR--AKLVLDRVKLLVFLSESQT 373 (722)
Q Consensus 309 ~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~---~y----------f~~--~k~~l~rvk~li~lS~~~~ 373 (722)
..+||+||+|+.. ..++..++.. ..+.+ +++.+|.... .+ ... ....+..++.+++.|+...
T Consensus 99 ~~~~Diih~h~~~-~~~~~~~~~~-~~~~p-~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~~ 175 (405)
T TIGR03449 99 PGYYDLIHSHYWL-SGQVGWLLRD-RWGVP-LVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTDEEA 175 (405)
T ss_pred CCCCCeEEechHH-HHHHHHHHHH-hcCCC-EEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHHH
Confidence 2479999888622 2333222222 22333 5555543210 00 000 1123455788888888753
Q ss_pred HHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCC
Q 004942 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (722)
Q Consensus 374 ~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~ 453 (722)
+. +. ...+..+ ..+.+||||+|.+.|.+... ...++++++++++++|+++|++.
T Consensus 176 ~~----~~---~~~~~~~-----------~ki~vi~ngvd~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~G~l~ 229 (405)
T TIGR03449 176 RD----LV---RHYDADP-----------DRIDVVAPGADLERFRPGDR--------ATERARLGLPLDTKVVAFVGRIQ 229 (405)
T ss_pred HH----HH---HHcCCCh-----------hhEEEECCCcCHHHcCCCcH--------HHHHHhcCCCCCCcEEEEecCCC
Confidence 32 10 0112111 13579999999988865432 34577889988889999999999
Q ss_pred CCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCccc
Q 004942 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (722)
Q Consensus 454 ~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (722)
+.||++.+++|++.+.++.++
T Consensus 230 ~~K~~~~li~a~~~l~~~~~~----------------------------------------------------------- 250 (405)
T TIGR03449 230 PLKAPDVLLRAVAELLDRDPD----------------------------------------------------------- 250 (405)
T ss_pred cccCHHHHHHHHHHHHhhCCC-----------------------------------------------------------
Confidence 999999999999999776543
Q ss_pred ccCCCCCcccccCCCCccccCCcccceeEEEcCC----c-hhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcE
Q 004942 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSD----G-KQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAM 608 (722)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~----G-~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V 608 (722)
.+++++++|. | +..+.++.++. .+++.++|
T Consensus 251 ------------------------~~~~l~ivG~~~~~g~~~~~~l~~~~~---------------------~~~l~~~v 285 (405)
T TIGR03449 251 ------------------------RNLRVIVVGGPSGSGLATPDALIELAA---------------------ELGIADRV 285 (405)
T ss_pred ------------------------cceEEEEEeCCCCCcchHHHHHHHHHH---------------------HcCCCceE
Confidence 1246777775 3 33444444442 33888899
Q ss_pred EeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHH
Q 004942 609 LWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQN 686 (722)
Q Consensus 609 ~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~a 686 (722)
.|+|.. +++.++|+.||++|+||. .|+||++++||||+|+|||+++.||.+|++.++.+|++++++|+ ++++++
T Consensus 286 ~~~g~~~~~~~~~~l~~ad~~v~ps~--~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~--~~la~~ 361 (405)
T TIGR03449 286 RFLPPRPPEELVHVYRAADVVAVPSY--NESFGLVAMEAQACGTPVVAARVGGLPVAVADGETGLLVDGHDP--ADWADA 361 (405)
T ss_pred EECCCCCHHHHHHHHHhCCEEEECCC--CCCcChHHHHHHHcCCCEEEecCCCcHhhhccCCceEECCCCCH--HHHHHH
Confidence 999975 789999999999999997 89999999999999999999999999999999999999999998 999999
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 687 LRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 687 I~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
|.++++|++.+++|+.++++.+++|+|+.++++|.
T Consensus 362 i~~~l~~~~~~~~~~~~~~~~~~~fsw~~~~~~~~ 396 (405)
T TIGR03449 362 LARLLDDPRTRIRMGAAAVEHAAGFSWAATADGLL 396 (405)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999999999999999885
No 11
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=1.5e-32 Score=301.88 Aligned_cols=348 Identities=17% Similarity=0.188 Sum_probs=237.8
Q ss_pred CCCcHHHHHHHHHHHHHhCCC--EEEEEEEcCCC-----CChhHHH--hCCcEEEEcCCcc-------------------
Q 004942 253 SMTGAPLSMMELATELLSCGA--TVSAVVLSKRG-----GLMPELA--RRKIKVLEDRGEP------------------- 304 (722)
Q Consensus 253 s~gGaplsm~eLA~eL~s~G~--~VsvV~ls~~g-----~l~~el~--~~gI~Vl~~~~~~------------------- 304 (722)
..||++..+.+||++|.+.|| +|.|+|....+ ++..... ..|++++..+...
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~~~ 103 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDELADN 103 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHHHHH
Confidence 468999999999999999997 99999954322 1111222 4789988775422
Q ss_pred --chhhh--cCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecch----hHh----------------HH---HHHh
Q 004942 305 --SFKTS--MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR----REY----------------FD---RAKL 357 (722)
Q Consensus 305 --~~~~~--~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r----~~y----------------f~---~~k~ 357 (722)
.+.++ .+||+||+|+.. +.++...+.+ ..+.+ ++..+|... ..+ +. ..+.
T Consensus 104 l~~~~~~~~~~~DvIH~h~~~-~~~~~~~~~~-~~~~p-~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (439)
T TIGR02472 104 LLQHLRQQGHLPDLIHAHYAD-AGYVGARLSR-LLGVP-LIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEEE 180 (439)
T ss_pred HHHHHHHcCCCCCEEEEcchh-HHHHHHHHHH-HhCCC-EEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHHH
Confidence 11122 369999998643 3333323333 23334 455554211 000 00 0122
Q ss_pred hhccccEEEEecHHhHHHHhhHHHhhhhhc-cCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHH
Q 004942 358 VLDRVKLLVFLSESQTKQWLTWCEEEKLKL-RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKE 436 (722)
Q Consensus 358 ~l~rvk~li~lS~~~~~~~~~~~~~~~i~l-~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~e 436 (722)
.+.+.+.+++.|...... .+ ... +..+ ..+.+||||+|++.|.+....+.+...+..+ ++
T Consensus 181 ~~~~ad~ii~~s~~~~~~---~~----~~~~~~~~-----------~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~-~~ 241 (439)
T TIGR02472 181 TLAHASLVITSTHQEIEE---QY----ALYDSYQP-----------ERMQVIPPGVDLSRFYPPQSSEETSEIDNLL-AP 241 (439)
T ss_pred HHHhCCEEEECCHHHHHH---HH----HhccCCCc-----------cceEEECCCcChhhcCCCCccccchhHHHHH-Hh
Confidence 344566777766542110 01 011 1111 1358999999999987653211111112222 34
Q ss_pred hCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccc
Q 004942 437 MGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSN 516 (722)
Q Consensus 437 lgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~ 516 (722)
++..+++++|+++||+.+.||++.|++|+..+......
T Consensus 242 ~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~------------------------------------------ 279 (439)
T TIGR02472 242 FLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEM------------------------------------------ 279 (439)
T ss_pred hccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhh------------------------------------------
Confidence 55666778999999999999999999999875321111
Q ss_pred cccccchhhhccCCcccccCCCCCcccccCCCCccccCCccccee-EEEcCCchhHHHHHHhhhccCCCCCCchhHHHHH
Q 004942 517 ELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRK-VLSKSDGKQQQALKILIGSVGSKSNKVPYVKEIL 595 (722)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~ 595 (722)
.+ ++++|+|++.+.+.... ..|.+++.
T Consensus 280 -------------------------------------------~~l~li~G~g~~~~~l~~~~---------~~~~~~~~ 307 (439)
T TIGR02472 280 -------------------------------------------ANLVLVLGCRDDIRKMESQQ---------REVLQKVL 307 (439)
T ss_pred -------------------------------------------ccEEEEeCCccccccccHHH---------HHHHHHHH
Confidence 11 23568887655443322 12233333
Q ss_pred HHHHhcCCCCCcEEeCCc--hhhHHHHHHHc----CEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCcc
Q 004942 596 EFLSQHSNLSKAMLWTPA--TTRVASLYSAA----DVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVT 669 (722)
Q Consensus 596 ~~l~~~~~L~~~V~f~G~--~~dv~~lysaA----Dv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~t 669 (722)
. +.+++++.++|.|+|. .++++.+|++| |+||+||. .|+||++++||||||+|||+|+.||++|+|.++.+
T Consensus 308 ~-~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~--~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~ 384 (439)
T TIGR02472 308 L-LIDRYDLYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPAL--TEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRN 384 (439)
T ss_pred H-HHHHcCCCceEEecCCCCHHHHHHHHHHHhhcCCEEecccc--cCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCc
Confidence 3 3345589999999996 47899999987 99999997 89999999999999999999999999999999999
Q ss_pred EEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH-hhcHHHHHHHHH
Q 004942 670 GLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSN-GLAERHSLGRYC 721 (722)
Q Consensus 670 GlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve-~~~~~~~~~~Y~ 721 (722)
|++++++|+ ++||++|..+++||+.+++|++++++.+. +|+|+.++++|.
T Consensus 385 G~lv~~~d~--~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~ 435 (439)
T TIGR02472 385 GLLVDVLDL--EAIASALEDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYL 435 (439)
T ss_pred EEEeCCCCH--HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999 99999999999999999999999999885 599999999986
No 12
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=5e-32 Score=292.62 Aligned_cols=340 Identities=17% Similarity=0.174 Sum_probs=248.2
Q ss_pred cEEEEEeCCC--CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC-----------ChhHHHhCCcEEEEcCCcc-----
Q 004942 243 RKFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGG-----------LMPELARRKIKVLEDRGEP----- 304 (722)
Q Consensus 243 kkillI~hel--s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~-----------l~~el~~~gI~Vl~~~~~~----- 304 (722)
+||+++++.. ..||++..+.+||++|.+.||+|+++|.....+ ...+....|++++..+...
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~ 80 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPS 80 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCcc
Confidence 4788888765 458999999999999999999999999552111 0111224688888765321
Q ss_pred ---c--------------hhh--hcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecch-----------hHhHHH
Q 004942 305 ---S--------------FKT--SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR-----------REYFDR 354 (722)
Q Consensus 305 ---~--------------~~~--~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r-----------~~yf~~ 354 (722)
+ +.+ ..+||+||+++................+.+ +++.+++.. ...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~~~~-~v~~~~d~~~~~~~~~~~~~~~~~~~ 159 (412)
T PRK10307 81 GLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLSGAR-TWLHIQDYEVDAAFGLGLLKGGKVAR 159 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhhCCC-EEEEeccCCHHHHHHhCCccCcHHHH
Confidence 0 111 268999999863322222222223333333 444444311 111111
Q ss_pred -----HHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhh
Q 004942 355 -----AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLL 429 (722)
Q Consensus 355 -----~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~ 429 (722)
.+..+.+++.++++|+...+. .. ..+..+ ..+.+||||+|++.|.+.... .
T Consensus 160 ~~~~~~~~~~~~ad~ii~~S~~~~~~----~~----~~~~~~-----------~~i~vi~ngvd~~~~~~~~~~-----~ 215 (412)
T PRK10307 160 LATAFERSLLRRFDNVSTISRSMMNK----AR----EKGVAA-----------EKVIFFPNWSEVARFQPVADA-----D 215 (412)
T ss_pred HHHHHHHHHHhhCCEEEecCHHHHHH----HH----HcCCCc-----------ccEEEECCCcCHhhcCCCCcc-----c
Confidence 122344588899999986442 21 111111 135899999999888765321 1
Q ss_pred HHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccc
Q 004942 430 RDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSD 509 (722)
Q Consensus 430 r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~ 509 (722)
+..+++++++++++++|+|+|++.+.||++.|++|++.+.+ .++
T Consensus 216 ~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l~~-~~~----------------------------------- 259 (412)
T PRK10307 216 VDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRLRD-RPD----------------------------------- 259 (412)
T ss_pred hHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHhcc-CCC-----------------------------------
Confidence 24578899999888999999999999999999999988732 232
Q ss_pred cccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCch
Q 004942 510 DVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVP 589 (722)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~ 589 (722)
++|+++|+|+.++.++.++...
T Consensus 260 --------------------------------------------------~~l~ivG~g~~~~~l~~~~~~~-------- 281 (412)
T PRK10307 260 --------------------------------------------------LIFVICGQGGGKARLEKMAQCR-------- 281 (412)
T ss_pred --------------------------------------------------eEEEEECCChhHHHHHHHHHHc--------
Confidence 5789999999888888776433
Q ss_pred hHHHHHHHHHhcCCCCCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCC----ccHHHHHHHHhCCCEEEcCCCC--hh
Q 004942 590 YVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGET----FGRVTIEAMAFGVPVLGTDAGG--TK 661 (722)
Q Consensus 590 Y~~el~~~l~~~~~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~Eg----fglviLEAMA~GlPVVaTd~GG--~~ 661 (722)
+++ +|.|+|.+ +++..+|++||++|+||. .|+ +|.+++||||||+|||+|+.|| ..
T Consensus 282 -------------~l~-~v~f~G~~~~~~~~~~~~~aDi~v~ps~--~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~ 345 (412)
T PRK10307 282 -------------GLP-NVHFLPLQPYDRLPALLKMADCHLLPQK--AGAADLVLPSKLTNMLASGRNVVATAEPGTELG 345 (412)
T ss_pred -------------CCC-ceEEeCCCCHHHHHHHHHhcCEeEEeec--cCcccccCcHHHHHHHHcCCCEEEEeCCCchHH
Confidence 665 79999975 689999999999999997 677 6788999999999999999876 56
Q ss_pred hhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH-hhcHHHHHHHHH
Q 004942 662 EIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSN-GLAERHSLGRYC 721 (722)
Q Consensus 662 EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve-~~~~~~~~~~Y~ 721 (722)
|+++ .+|++++++|+ ++|+++|..+++|++.+++|+++|++.++ +|+|+.++++|.
T Consensus 346 ~~i~--~~G~~~~~~d~--~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 402 (412)
T PRK10307 346 QLVE--GIGVCVEPESV--EALVAAIAALARQALLRPKLGTVAREYAERTLDKENVLRQFI 402 (412)
T ss_pred HHHh--CCcEEeCCCCH--HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 8887 48999999998 99999999999999999999999999996 499999999885
No 13
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=2.5e-32 Score=294.44 Aligned_cols=332 Identities=15% Similarity=0.164 Sum_probs=241.0
Q ss_pred EEEEEeCCC--CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-----------------
Q 004942 244 KFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP----------------- 304 (722)
Q Consensus 244 killI~hel--s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~----------------- 304 (722)
||+++++.. ..||++..+.+||++|.++||+|.+++...+.....+....|++++..+...
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l 80 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLL 80 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHHHH
Confidence 567777755 5689999999999999999999999996543333334445678887665321
Q ss_pred -chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecch-----h-HhHHH-HHhhhccccEEEEecHHhHHHH
Q 004942 305 -SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR-----R-EYFDR-AKLVLDRVKLLVFLSESQTKQW 376 (722)
Q Consensus 305 -~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r-----~-~yf~~-~k~~l~rvk~li~lS~~~~~~~ 376 (722)
++..+.+||+||+++......+...+.....+. ++++..|... . .+... ....+.+.+.++++|....+.
T Consensus 81 ~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~-~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~- 158 (398)
T cd03796 81 RNILIRERITIVHGHQAFSALAHEALLHARTMGL-KTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKEN- 158 (398)
T ss_pred HHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCC-cEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecHhHhhH-
Confidence 222367999999997542211222222222233 3666555321 0 01111 122345688899999885321
Q ss_pred hhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCC
Q 004942 377 LTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGK 456 (722)
Q Consensus 377 ~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~K 456 (722)
.. ......+ ..+.+||||+|+..|.+.... .+++.++|+++|++.+.|
T Consensus 159 --~~----~~~~~~~-----------~k~~vi~ngvd~~~f~~~~~~---------------~~~~~~~i~~~grl~~~K 206 (398)
T cd03796 159 --TV----LRASLDP-----------ERVSVIPNAVDSSDFTPDPSK---------------RDNDKITIVVISRLVYRK 206 (398)
T ss_pred --HH----HHhCCCh-----------hhEEEEcCccCHHHcCCCccc---------------CCCCceEEEEEeccchhc
Confidence 01 1111111 134799999998887654320 135678999999999999
Q ss_pred CHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccC
Q 004942 457 GQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNL 536 (722)
Q Consensus 457 g~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (722)
|++.|++|++.+.++.++
T Consensus 207 g~~~li~a~~~l~~~~~~-------------------------------------------------------------- 224 (398)
T cd03796 207 GIDLLVGIIPEICKKHPN-------------------------------------------------------------- 224 (398)
T ss_pred CHHHHHHHHHHHHhhCCC--------------------------------------------------------------
Confidence 999999999998766554
Q ss_pred CCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch--
Q 004942 537 LSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT-- 614 (722)
Q Consensus 537 ~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~-- 614 (722)
.+|+++|+|+..+.++.++... ++.++|.|+|..
T Consensus 225 -----------------------~~l~i~G~g~~~~~l~~~~~~~---------------------~l~~~v~~~G~~~~ 260 (398)
T cd03796 225 -----------------------VRFIIGGDGPKRILLEEMREKY---------------------NLQDRVELLGAVPH 260 (398)
T ss_pred -----------------------EEEEEEeCCchHHHHHHHHHHh---------------------CCCCeEEEeCCCCH
Confidence 5788999998877777666433 788899999975
Q ss_pred hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCH
Q 004942 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 615 ~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np 694 (722)
+++.++|++||++|+||. .|+||++++||||||+|||+|+.||.+|++.++. +++.+ +|+ ++|+++|.++++++
T Consensus 261 ~~~~~~l~~ad~~v~pS~--~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~~-~~~~~-~~~--~~l~~~l~~~l~~~ 334 (398)
T cd03796 261 ERVRDVLVQGHIFLNTSL--TEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPDM-ILLAE-PDV--ESIVRKLEEAISIL 334 (398)
T ss_pred HHHHHHHHhCCEEEeCCh--hhccCHHHHHHHHcCCCEEECCCCCchhheeCCc-eeecC-CCH--HHHHHHHHHHHhCh
Confidence 789999999999999997 8999999999999999999999999999998763 44444 466 99999999999988
Q ss_pred HHHHHHHHHHHHHHHh-hcHHHHHHHHH
Q 004942 695 SVRERMAMEGRKKSNG-LAERHSLGRYC 721 (722)
Q Consensus 695 ~~r~~mg~~grk~ve~-~~~~~~~~~Y~ 721 (722)
.....++.++++.+++ |+|+.++++|.
T Consensus 335 ~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 362 (398)
T cd03796 335 RTGKHDPWSFHNRVKKMYSWEDVAKRTE 362 (398)
T ss_pred hhhhhHHHHHHHHHHhhCCHHHHHHHHH
Confidence 8777788888887755 99999999885
No 14
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=1.7e-31 Score=275.85 Aligned_cols=337 Identities=20% Similarity=0.290 Sum_probs=241.5
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-------------chhhhc
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-------------SFKTSM 310 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-------------~~~~~~ 310 (722)
+|+++++.+..||++..+.+|+++|.+.||+|++++...... ..... ....+....... ++.++.
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESE-VKPPI-DATIILNLNMSKNPLSFLLALWKLRKILRQF 78 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCC-ccchh-hccceEEecccccchhhHHHHHHHHHHHHhc
Confidence 478898999999999999999999999999999998654322 11222 222221211111 233467
Q ss_pred CccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhH-hH-HHH-HhhhccccEEEEecHHhHHHHhhHHHhhhhhc
Q 004942 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE-YF-DRA-KLVLDRVKLLVFLSESQTKQWLTWCEEEKLKL 387 (722)
Q Consensus 311 k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~-yf-~~~-k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l 387 (722)
+||+||+++..+. ++...+... .....++.+.|..... .. ... +.........+.++....+. . +..
T Consensus 79 ~pdiv~~~~~~~~-~~~~l~~~~-~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~----~----~~~ 148 (360)
T cd04951 79 KPDVVHAHMFHAN-IFARLLRLF-LPSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEALDY----F----IAS 148 (360)
T ss_pred CCCEEEEcccchH-HHHHHHHhh-CCCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEEcHHHHHH----H----Hhc
Confidence 9999999865432 222222222 2233455555432211 11 010 11111234455556553221 1 111
Q ss_pred cCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHH
Q 004942 388 RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQL 467 (722)
Q Consensus 388 ~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~ 467 (722)
...+ ...+.+||||+|.+.|.+.... +...++++++++++++++++|++.+.||++.+++++..
T Consensus 149 ~~~~----------~~~~~~i~ng~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~ 212 (360)
T cd04951 149 KAFN----------ANKSFVVYNGIDTDRFRKDPAR------RLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAK 212 (360)
T ss_pred cCCC----------cccEEEEccccchhhcCcchHH------HHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHH
Confidence 1111 1135799999999888765432 25678899998889999999999999999999999999
Q ss_pred hHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCC
Q 004942 468 MIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGN 547 (722)
Q Consensus 468 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (722)
+.++.++
T Consensus 213 l~~~~~~------------------------------------------------------------------------- 219 (360)
T cd04951 213 LLSDYLD------------------------------------------------------------------------- 219 (360)
T ss_pred HHhhCCC-------------------------------------------------------------------------
Confidence 9776554
Q ss_pred CCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHHcCEE
Q 004942 548 TDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVY 627 (722)
Q Consensus 548 ~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysaADv~ 627 (722)
.+++++|+|+..+.++..+... ++.++|.|+|.++++..+|+.||++
T Consensus 220 ------------~~l~i~G~g~~~~~~~~~~~~~---------------------~~~~~v~~~g~~~~~~~~~~~ad~~ 266 (360)
T cd04951 220 ------------IKLLIAGDGPLRATLERLIKAL---------------------GLSNRVKLLGLRDDIAAYYNAADLF 266 (360)
T ss_pred ------------eEEEEEcCCCcHHHHHHHHHhc---------------------CCCCcEEEecccccHHHHHHhhceE
Confidence 5788899998887777665432 6778999999999999999999999
Q ss_pred EEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhh-cCHHHHHHHHHHHHH
Q 004942 628 VINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL-KNPSVRERMAMEGRK 706 (722)
Q Consensus 628 V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL-~np~~r~~mg~~grk 706 (722)
++||. .|+||++++||||+|+|||+++.|+..|++++ +|++++++|+ ++++++|..++ .+++.++.++.+ ++
T Consensus 267 v~~s~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~--~g~~~~~~~~--~~~~~~i~~ll~~~~~~~~~~~~~-~~ 339 (360)
T cd04951 267 VLSSA--WEGFGLVVAEAMACELPVVATDAGGVREVVGD--SGLIVPISDP--EALANKIDEILKMSGEERDIIGAR-RE 339 (360)
T ss_pred Eeccc--ccCCChHHHHHHHcCCCEEEecCCChhhEecC--CceEeCCCCH--HHHHHHHHHHHhCCHHHHHHHHHH-HH
Confidence 99997 89999999999999999999999999999987 7999999888 99999999999 467777777777 55
Q ss_pred HH-HhhcHHHHHHHHH
Q 004942 707 KS-NGLAERHSLGRYC 721 (722)
Q Consensus 707 ~v-e~~~~~~~~~~Y~ 721 (722)
.+ ++|+|+.++++|.
T Consensus 340 ~~~~~~s~~~~~~~~~ 355 (360)
T cd04951 340 RIVKKFSINSIVQQWL 355 (360)
T ss_pred HHHHhcCHHHHHHHHH
Confidence 55 6699999999885
No 15
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=2.5e-31 Score=266.59 Aligned_cols=325 Identities=25% Similarity=0.367 Sum_probs=243.7
Q ss_pred EEEEEeCCCC-CCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc---------------chh
Q 004942 244 KFILIFHELS-MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP---------------SFK 307 (722)
Q Consensus 244 killI~hels-~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~---------------~~~ 307 (722)
||+++++.+. .||++..+.+|+++|.+.||+|.+++.......... ...++.+....... .+.
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYE-LDPKIKVIDLGDKRDSKLLARFKKLRRLRKLL 79 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccc-cCCccceeecccccccchhccccchHHHHHhh
Confidence 5888889888 999999999999999999999999996655411111 13344444433210 333
Q ss_pred hhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHHH------HHhhhccccEEEEecHHhHHHHhhHHH
Q 004942 308 TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDR------AKLVLDRVKLLVFLSESQTKQWLTWCE 381 (722)
Q Consensus 308 ~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~------~k~~l~rvk~li~lS~~~~~~~~~~~~ 381 (722)
+..+||+|+++... ...++.....+..+++.|.|......... .+..+..++.+++.|+.... .
T Consensus 80 ~~~~~d~i~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~-----~- 149 (348)
T cd03820 80 KNNKPDVVISFLTS----LLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRA-----L- 149 (348)
T ss_pred cccCCCEEEEcCch----HHHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHH-----H-
Confidence 46899999988654 11222222222224566665432222111 23345568889999988521 1
Q ss_pred hhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHH
Q 004942 382 EEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLL 461 (722)
Q Consensus 382 ~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~L 461 (722)
.... + ...+.++||+++.+.+.+. ...+...++++|++.+.||++.+
T Consensus 150 ----~~~~-~----------~~~~~vi~~~~~~~~~~~~------------------~~~~~~~i~~~g~~~~~K~~~~l 196 (348)
T cd03820 150 ----YYKK-F----------NKNVVVIPNPLPFPPEEPS------------------SDLKSKRILAVGRLVPQKGFDLL 196 (348)
T ss_pred ----hhcc-C----------CCCeEEecCCcChhhcccc------------------CCCCCcEEEEEEeeccccCHHHH
Confidence 1111 1 1235899999988766543 12456789999999999999999
Q ss_pred HHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCc
Q 004942 462 VESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSL 541 (722)
Q Consensus 462 leA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (722)
+++++.+.+..++
T Consensus 197 ~~~~~~l~~~~~~------------------------------------------------------------------- 209 (348)
T cd03820 197 IEAWAKIAKKHPD------------------------------------------------------------------- 209 (348)
T ss_pred HHHHHHHHhcCCC-------------------------------------------------------------------
Confidence 9999999765444
Q ss_pred ccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHH
Q 004942 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLY 621 (722)
Q Consensus 542 ~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~ly 621 (722)
++++++|.|+....++.++.. +++..+|.|.|..+++.++|
T Consensus 210 ------------------~~l~i~G~~~~~~~~~~~~~~---------------------~~~~~~v~~~g~~~~~~~~~ 250 (348)
T cd03820 210 ------------------WKLRIVGDGPEREALEALIKE---------------------LGLEDRVILLGFTKNIEEYY 250 (348)
T ss_pred ------------------eEEEEEeCCCCHHHHHHHHHH---------------------cCCCCeEEEcCCcchHHHHH
Confidence 467888988877777665533 27788999999989999999
Q ss_pred HHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC-CChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHH
Q 004942 622 SAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERM 700 (722)
Q Consensus 622 saADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~-GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~m 700 (722)
+.||++++||. .|+||++++|||+||+|||+++. ++..+++.++.+|+++++.|+ ++++++|..+++||+.+++|
T Consensus 251 ~~ad~~i~ps~--~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~i~~ll~~~~~~~~~ 326 (348)
T cd03820 251 AKASIFVLTSR--FEGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGDV--EALAEALLRLMEDEELRKRM 326 (348)
T ss_pred HhCCEEEeCcc--ccccCHHHHHHHHcCCCEEEecCCCchHhhhccCcceEEeCCCCH--HHHHHHHHHHHcCHHHHHHH
Confidence 99999999997 79999999999999999999997 467788888789999999998 99999999999999999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHC
Q 004942 701 AMEGRKKSNGLAERHSLGRYCN 722 (722)
Q Consensus 701 g~~grk~ve~~~~~~~~~~Y~~ 722 (722)
++++++.+++|+|+.++++|.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~ 348 (348)
T cd03820 327 GANARESAERFSIENIIKQWEE 348 (348)
T ss_pred HHHHHHHHHHhCHHHHHHHhcC
Confidence 9999999999999999999864
No 16
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=1.2e-31 Score=288.48 Aligned_cols=340 Identities=16% Similarity=0.205 Sum_probs=234.5
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-------------------
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP------------------- 304 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~------------------- 304 (722)
|||+|+.++. --.-+||++|.++||+|+++|....+.... |++++..+...
T Consensus 1 ~il~~~~~~p-----~~~~~la~~L~~~G~~v~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (396)
T cd03818 1 RILFVHQNFP-----GQFRHLAPALAAQGHEVVFLTEPNAAPPPG-----GVRVVRYRPPRGPTSGTHPYLREFEEAVLR 70 (396)
T ss_pred CEEEECCCCc-----hhHHHHHHHHHHCCCEEEEEecCCCCCCCC-----CeeEEEecCCCCCCCCCCccchhHHHHHHH
Confidence 4666666543 225679999999999999999766544332 78887655431
Q ss_pred ---------ch-hhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEE--Eec--chh---------H----hHHHH--
Q 004942 305 ---------SF-KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWW--IME--NRR---------E----YFDRA-- 355 (722)
Q Consensus 305 ---------~~-~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~--I~e--~r~---------~----yf~~~-- 355 (722)
.+ .+..+||+||+|+...... .+.....+.+.+.+. .+. ... . ..-+.
T Consensus 71 ~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~---~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (396)
T cd03818 71 GQAVARALLALRAKGFRPDVIVAHPGWGETL---FLKDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRN 147 (396)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCccchhh---hHHHhCCCCCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhh
Confidence 11 1246899999996432111 122222222222111 110 000 0 00011
Q ss_pred ---HhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHH
Q 004942 356 ---KLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDS 432 (722)
Q Consensus 356 ---k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~ 432 (722)
...+..++.+++.|+.+.+. +...+ ...+.+||||+|++.|.+..... ..
T Consensus 148 ~~~~~~~~~ad~vi~~s~~~~~~---------~~~~~------------~~ki~vI~ngvd~~~f~~~~~~~------~~ 200 (396)
T cd03818 148 ALILLALAQADAGVSPTRWQRST---------FPAEL------------RSRISVIHDGIDTDRLRPDPQAR------LR 200 (396)
T ss_pred hHhHHHHHhCCEEECCCHHHHhh---------CcHhh------------ccceEEeCCCccccccCCCchhh------hc
Confidence 12345678888888886432 10000 01358999999999998764321 12
Q ss_pred HHHHhCCCCCCEEEEEEec-CCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccc
Q 004942 433 VRKEMGLTDQDMLVLSLSS-INPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDV 511 (722)
Q Consensus 433 ~R~elgl~~~~~lIl~vGr-i~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~ 511 (722)
.+...++.+++++|+|+|| +.+.||++.|++|+..+.++.++
T Consensus 201 ~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~------------------------------------- 243 (396)
T cd03818 201 LPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPD------------------------------------- 243 (396)
T ss_pred ccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCC-------------------------------------
Confidence 3334445667889999997 99999999999999999877665
Q ss_pred cCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCC-CCchh
Q 004942 512 GLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKS-NKVPY 590 (722)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~s-n~~~Y 590 (722)
.+++++|++.. ..|... ....|
T Consensus 244 ------------------------------------------------~~lvivG~~~~---------~~g~~~~~~~~~ 266 (396)
T cd03818 244 ------------------------------------------------ARVVIVGGDGV---------SYGAPPPDGESW 266 (396)
T ss_pred ------------------------------------------------cEEEEEcCCCc---------ccCCCCCCcccH
Confidence 35666665421 011110 11123
Q ss_pred HHHHHHHHHhcCCCCCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCc
Q 004942 591 VKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNV 668 (722)
Q Consensus 591 ~~el~~~l~~~~~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~ 668 (722)
.+.+.+.+...++ .++|.|+|.+ +++..+|+.||++|+||. .|++|++++||||||+|||+|+.||..|++.++.
T Consensus 267 ~~~~~~~~~~~~~-~~~V~f~G~v~~~~~~~~l~~adv~v~~s~--~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~ 343 (396)
T cd03818 267 KQHMLDELGGRLD-LSRVHFLGRVPYDQYLALLQVSDVHVYLTY--PFVLSWSLLEAMACGCLVVGSDTAPVREVITDGE 343 (396)
T ss_pred HHHHHHHhhcccC-cceEEEeCCCCHHHHHHHHHhCcEEEEcCc--ccccchHHHHHHHCCCCEEEcCCCCchhhcccCC
Confidence 3333333332212 4689999986 689999999999999997 8999999999999999999999999999999999
Q ss_pred cEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh-hcHHHHHHHHHC
Q 004942 669 TGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNG-LAERHSLGRYCN 722 (722)
Q Consensus 669 tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~-~~~~~~~~~Y~~ 722 (722)
+|++++++|+ ++|+++|..+++||+.+++|++++++.+++ |+|+.++++|.+
T Consensus 344 ~G~lv~~~d~--~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~~ 396 (396)
T cd03818 344 NGLLVDFFDP--DALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPRQLA 396 (396)
T ss_pred ceEEcCCCCH--HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHHHhC
Confidence 9999999998 999999999999999999999999999977 999999999874
No 17
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=2.9e-31 Score=282.57 Aligned_cols=337 Identities=16% Similarity=0.185 Sum_probs=234.6
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChh---HHH--hCCcEEEEcCCcc--c-------hh--
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP---ELA--RRKIKVLEDRGEP--S-------FK-- 307 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~---el~--~~gI~Vl~~~~~~--~-------~~-- 307 (722)
||+++++.+..||++.+++++++.|.+.||+|.++++....+... +.. -.|.++ .++... . +.
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 79 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNALQGADI-ELSEEEKEIYLEWNEENAER 79 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhhcCCCC-CCCHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999655433211 111 124443 221111 1 11
Q ss_pred --hhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHh----HHHHHhhhccccEEEEecHHhHHHHhhHHH
Q 004942 308 --TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREY----FDRAKLVLDRVKLLVFLSESQTKQWLTWCE 381 (722)
Q Consensus 308 --~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~y----f~~~k~~l~rvk~li~lS~~~~~~~~~~~~ 381 (722)
...+||+||+|+..... + . ......+.+ ++++.|.....+ ....+..+.+.+.+++.+...
T Consensus 80 ~~~~~~~Dvv~~h~~~~~~-~-~-~~~~~~~~~-~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~--------- 146 (372)
T cd03792 80 PLLDLDADVVVIHDPQPLA-L-P-LFKKKRGRP-WIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHLPEY--------- 146 (372)
T ss_pred ccccCCCCEEEECCCCchh-H-H-HhhhcCCCe-EEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecHHHh---------
Confidence 14589999999764211 1 1 111111333 666666433211 111223334466666655221
Q ss_pred hhhhhccCCCcccccCCCcccceEEeecCCCCCCC-CC-chhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHH
Q 004942 382 EEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPT-SS-PEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQL 459 (722)
Q Consensus 382 ~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~-f~-~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~ 459 (722)
......+ . . .+||||+|... +. ..... .+..+|+++|++++.++|+++||+.+.||++
T Consensus 147 ---~~~~~~~--------~---~-~vipngvd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~ 206 (372)
T cd03792 147 ---VPPQVPP--------R---K-VIIPPSIDPLSGKNRELSPA-----DIEYILEKYGIDPERPYITQVSRFDPWKDPF 206 (372)
T ss_pred ---cCCCCCC--------c---e-EEeCCCCCCCccccCCCCHH-----HHHHHHHHhCCCCCCcEEEEEeccccccCcH
Confidence 1111111 1 1 38999999753 21 11111 1256788899988899999999999999999
Q ss_pred HHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCC
Q 004942 460 LLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSP 539 (722)
Q Consensus 460 ~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (722)
.+++|+..+.++.++
T Consensus 207 ~ll~a~~~l~~~~~~----------------------------------------------------------------- 221 (372)
T cd03792 207 GVIDAYRKVKERVPD----------------------------------------------------------------- 221 (372)
T ss_pred HHHHHHHHHHhhCCC-----------------------------------------------------------------
Confidence 999999998765444
Q ss_pred CcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch----h
Q 004942 540 SLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT----T 615 (722)
Q Consensus 540 ~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~----~ 615 (722)
.+|+++|+|+..+... ..|.+ .+.+..++.++|.|+|.. +
T Consensus 222 --------------------~~l~i~G~g~~~~~~~------------~~~~~----~~~~~~~~~~~v~~~~~~~~~~~ 265 (372)
T cd03792 222 --------------------PQLVLVGSGATDDPEG------------WIVYE----EVLEYAEGDPDIHVLTLPPVSDL 265 (372)
T ss_pred --------------------CEEEEEeCCCCCCchh------------HHHHH----HHHHHhCCCCCeEEEecCCCCHH
Confidence 4678888886531100 01111 122223677789998864 6
Q ss_pred hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHH
Q 004942 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPS 695 (722)
Q Consensus 616 dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~ 695 (722)
++..+|++||++++||. .|+||++++||||||+|||+|+.||..++|.++.+|+++++ . ++++++|..+++|++
T Consensus 266 ~~~~~~~~ad~~v~~s~--~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~~~--~--~~~a~~i~~ll~~~~ 339 (372)
T cd03792 266 EVNALQRASTVVLQKSI--REGFGLTVTEALWKGKPVIAGPVGGIPLQIEDGETGFLVDT--V--EEAAVRILYLLRDPE 339 (372)
T ss_pred HHHHHHHhCeEEEeCCC--ccCCCHHHHHHHHcCCCEEEcCCCCchhhcccCCceEEeCC--c--HHHHHHHHHHHcCHH
Confidence 89999999999999997 99999999999999999999999999999999999999874 3 678999999999999
Q ss_pred HHHHHHHHHHHHH-HhhcHHHHHHHHH
Q 004942 696 VRERMAMEGRKKS-NGLAERHSLGRYC 721 (722)
Q Consensus 696 ~r~~mg~~grk~v-e~~~~~~~~~~Y~ 721 (722)
.+++|++++++.+ ++|+|+.++++|.
T Consensus 340 ~~~~~~~~a~~~~~~~~s~~~~~~~~~ 366 (372)
T cd03792 340 LRRKMGANAREHVRENFLITRHLKDYL 366 (372)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999988 5699999999885
No 18
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=5.1e-31 Score=288.02 Aligned_cols=334 Identities=19% Similarity=0.206 Sum_probs=241.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC-Ch-hHHH--hCCcEEEEcCC-----------------
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LM-PELA--RRKIKVLEDRG----------------- 302 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~-l~-~el~--~~gI~Vl~~~~----------------- 302 (722)
||.++.+.+. .=++-++.+-..+|.++|++|.++++..+.. .. +... +..-++..++.
T Consensus 2 ~ia~~~~~~P-~~setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T PRK15427 2 KVGFFLLKFP-LSSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRASQTL 80 (406)
T ss_pred eEEEEeccCC-ccchhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhhhhHh
Confidence 6777777665 4457778888889999999999999765432 11 1111 11111111100
Q ss_pred --------------cc---------------chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecch---h-
Q 004942 303 --------------EP---------------SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR---R- 349 (722)
Q Consensus 303 --------------~~---------------~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r---~- 349 (722)
.. ...+..+||+||+|...+. +....+........+++.++|... .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~-~~~~~~~~~~~~~~~~~~t~Hg~d~~~~~ 159 (406)
T PRK15427 81 RGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAG-VTAAKLRELGVLRGKIATIFHGIDISSRE 159 (406)
T ss_pred hhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHH-HHHHHHHHhCCCCCCeEEEEcccccccch
Confidence 00 0112568999999976543 333334332111122455665321 1
Q ss_pred ---HhHHHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHh
Q 004942 350 ---EYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKR 426 (722)
Q Consensus 350 ---~yf~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr 426 (722)
.|.......+.+.+.++++|+...+. . .+.+..+ ..+.+||||+|...|.+....
T Consensus 160 ~~~~~~~~~~~~~~~ad~vv~~S~~~~~~----l----~~~g~~~-----------~ki~vi~nGvd~~~f~~~~~~--- 217 (406)
T PRK15427 160 VLNHYTPEYQQLFRRGDLMLPISDLWAGR----L----QKMGCPP-----------EKIAVSRMGVDMTRFSPRPVK--- 217 (406)
T ss_pred hhhhhhHHHHHHHHhCCEEEECCHHHHHH----H----HHcCCCH-----------HHEEEcCCCCCHHHcCCCccc---
Confidence 11122334456788899999875332 2 1122211 235799999999888653310
Q ss_pred hhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCccccccccccccccc
Q 004942 427 NLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQ 506 (722)
Q Consensus 427 ~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~ 506 (722)
..++++.|+++||+.+.||++.+++|++.+.++.++
T Consensus 218 ------------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~-------------------------------- 253 (406)
T PRK15427 218 ------------APATPLEIISVARLTEKKGLHVAIEACRQLKEQGVA-------------------------------- 253 (406)
T ss_pred ------------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCC--------------------------------
Confidence 123567899999999999999999999999776554
Q ss_pred ccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCC
Q 004942 507 MSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSN 586 (722)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn 586 (722)
+++.++|+|+.++.++.++...
T Consensus 254 -----------------------------------------------------~~l~ivG~G~~~~~l~~~~~~~----- 275 (406)
T PRK15427 254 -----------------------------------------------------FRYRILGIGPWERRLRTLIEQY----- 275 (406)
T ss_pred -----------------------------------------------------EEEEEEECchhHHHHHHHHHHc-----
Confidence 5788999999988888777533
Q ss_pred CchhHHHHHHHHHhcCCCCCcEEeCCch--hhHHHHHHHcCEEEEcCCC----CCCCccHHHHHHHHhCCCEEEcCCCCh
Q 004942 587 KVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQG----LGETFGRVTIEAMAFGVPVLGTDAGGT 660 (722)
Q Consensus 587 ~~~Y~~el~~~l~~~~~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~----l~EgfglviLEAMA~GlPVVaTd~GG~ 660 (722)
++.++|.|+|.+ +++.++|+.||++|+||.. -.||+|++++||||||+|||+|+.||.
T Consensus 276 ----------------~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~ 339 (406)
T PRK15427 276 ----------------QLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGI 339 (406)
T ss_pred ----------------CCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCc
Confidence 788899999976 6899999999999999961 029999999999999999999999999
Q ss_pred hhhhccCccEEEECCCCccHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHh-hcHHHHHHHHH
Q 004942 661 KEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKSNG-LAERHSLGRYC 721 (722)
Q Consensus 661 ~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~-np~~r~~mg~~grk~ve~-~~~~~~~~~Y~ 721 (722)
+|+|+++.+|++++++|+ ++|+++|..+++ ||+.+++|+++|++.+++ |+|+..++++.
T Consensus 340 ~E~v~~~~~G~lv~~~d~--~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~ 400 (406)
T PRK15427 340 PELVEADKSGWLVPENDA--QALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELA 400 (406)
T ss_pred hhhhcCCCceEEeCCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999998 999999999999 999999999999999955 99999988875
No 19
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=1.1e-30 Score=274.64 Aligned_cols=338 Identities=21% Similarity=0.279 Sum_probs=241.8
Q ss_pred CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChh-HHHhCCcEEEEcCCcc---------------------chhhhc
Q 004942 253 SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP-ELARRKIKVLEDRGEP---------------------SFKTSM 310 (722)
Q Consensus 253 s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~-el~~~gI~Vl~~~~~~---------------------~~~~~~ 310 (722)
..||++.++.+||++|.+.||+|.+++.....+... .....++.++..+... ......
T Consensus 19 ~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (398)
T cd03800 19 DTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRRE 98 (398)
T ss_pred CCCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHhc
Confidence 378999999999999999999999999654433221 2234577776554311 111133
Q ss_pred --CccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchh----Hh-----------HHHHHhhhccccEEEEecHHhH
Q 004942 311 --KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR----EY-----------FDRAKLVLDRVKLLVFLSESQT 373 (722)
Q Consensus 311 --k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~----~y-----------f~~~k~~l~rvk~li~lS~~~~ 373 (722)
+||+||++.... .+....+.+.. +.+ ++++.|.... .. +......+...+.+++.|+...
T Consensus 99 ~~~~Div~~~~~~~-~~~~~~~~~~~-~~~-~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~ 175 (398)
T cd03800 99 GGRPDLIHAHYWDS-GLVALLLARRL-GIP-LVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTPQEA 175 (398)
T ss_pred CCCccEEEEecCcc-chHHHHHHhhc-CCc-eEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEcCHHHH
Confidence 999999885432 22222222222 333 4555543211 00 0111223455888888888753
Q ss_pred HHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCC
Q 004942 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (722)
Q Consensus 374 ~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~ 453 (722)
.. . .+....+ ...+.+||||+|...|.+.... ...+++++...++++|+++||+.
T Consensus 176 ~~----~----~~~~~~~----------~~~~~vi~ng~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~gr~~ 230 (398)
T cd03800 176 EE----L----YSLYGAY----------PRRIRVVPPGVDLERFTPYGRA-------EARRARLLRDPDKPRILAVGRLD 230 (398)
T ss_pred HH----H----HHHcccc----------ccccEEECCCCCccceecccch-------hhHHHhhccCCCCcEEEEEcccc
Confidence 32 1 1111111 1125799999999888665432 11256667777889999999999
Q ss_pred CCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCccc
Q 004942 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (722)
Q Consensus 454 ~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (722)
+.||++.+++++..+.++.++
T Consensus 231 ~~k~~~~ll~a~~~l~~~~~~----------------------------------------------------------- 251 (398)
T cd03800 231 PRKGIDTLIRAYAELPELRER----------------------------------------------------------- 251 (398)
T ss_pred cccCHHHHHHHHHHHHHhCCC-----------------------------------------------------------
Confidence 999999999999999876544
Q ss_pred ccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCc
Q 004942 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (722)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~ 613 (722)
.+++++|.|..... .+....++.+.+.+++.++|.|+|.
T Consensus 252 --------------------------~~l~i~G~~~~~~~---------------~~~~~~~~~~~~~~~~~~~v~~~g~ 290 (398)
T cd03800 252 --------------------------ANLVIVGGPRDDIL---------------AMDEEELRELARELGVIDRVDFPGR 290 (398)
T ss_pred --------------------------eEEEEEECCCCcch---------------hhhhHHHHHHHHhcCCCceEEEecc
Confidence 35667776654211 0111112334445588899999998
Q ss_pred h--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhh
Q 004942 614 T--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL 691 (722)
Q Consensus 614 ~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL 691 (722)
+ +++..+|+.||++++||. .|++|++++||||||+|||+++.||..|+++++.+|++++++|+ ++++++|..++
T Consensus 291 ~~~~~~~~~~~~adi~l~ps~--~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~--~~l~~~i~~l~ 366 (398)
T cd03800 291 VSREDLPALYRAADVFVNPAL--YEPFGLTALEAMACGLPVVATAVGGPRDIVVDGVTGLLVDPRDP--EALAAALRRLL 366 (398)
T ss_pred CCHHHHHHHHHhCCEEEeccc--ccccCcHHHHHHhcCCCEEECCCCCHHHHccCCCCeEEeCCCCH--HHHHHHHHHHH
Confidence 6 689999999999999997 89999999999999999999999999999999999999999998 99999999999
Q ss_pred cCHHHHHHHHHHHHHHH-HhhcHHHHHHHHHC
Q 004942 692 KNPSVRERMAMEGRKKS-NGLAERHSLGRYCN 722 (722)
Q Consensus 692 ~np~~r~~mg~~grk~v-e~~~~~~~~~~Y~~ 722 (722)
+|++.+++|+.++++.+ ++|+|+..+++|.+
T Consensus 367 ~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 398 (398)
T cd03800 367 TDPALRRRLSRAGLRRARARYTWERVAARLLE 398 (398)
T ss_pred hCHHHHHHHHHHHHHHHHHhCCHHHHHHHHhC
Confidence 99999999999999999 66999999999864
No 20
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2e-30 Score=292.40 Aligned_cols=344 Identities=17% Similarity=0.211 Sum_probs=245.6
Q ss_pred cEEEEEeCCCCCCcHHHHHH----HHHHHHHhCCC--------EEEEEEEcC--CCC---ChhHHHhCCcEEEEcCCcc-
Q 004942 243 RKFILIFHELSMTGAPLSMM----ELATELLSCGA--------TVSAVVLSK--RGG---LMPELARRKIKVLEDRGEP- 304 (722)
Q Consensus 243 kkillI~hels~gGaplsm~----eLA~eL~s~G~--------~VsvV~ls~--~g~---l~~el~~~gI~Vl~~~~~~- 304 (722)
-.+++++.+|+.||++..+. ++++...+.|- .|.++|-+- .++ +.+++...+|+|....--.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (578)
T PRK15490 162 GRLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLEEQVEVLEIAKITG 241 (578)
T ss_pred cceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHhcCCceEEeeccch
Confidence 36889999999999999988 55555555555 677777432 222 5567778888886542111
Q ss_pred --------------------------------chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEec---c-h
Q 004942 305 --------------------------------SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIME---N-R 348 (722)
Q Consensus 305 --------------------------------~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e---~-r 348 (722)
.+.++.+||+||++.. ..++...++....+.+.++...|- . .
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~--~a~l~g~laA~lagvpviv~~~h~~~~~~~ 319 (578)
T PRK15490 242 NLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQD--GACLMIALAALIAGVPRIQLGLRGLPPVVR 319 (578)
T ss_pred hhhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCc--ccHHHHHHHHHhcCCCEEEEeecccCCcch
Confidence 3445899999988753 345556666666677655554431 0 0
Q ss_pred hHhHHHHHhhhccccE------EEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhH
Q 004942 349 REYFDRAKLVLDRVKL------LVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKM 422 (722)
Q Consensus 349 ~~yf~~~k~~l~rvk~------li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~ 422 (722)
...+......+.+... ++..+....+.... .++.++ ..+.+||||+|++.|.+...
T Consensus 320 ~r~~~~e~~~~~~a~~i~~~sd~v~~s~~v~~~l~~-------~lgip~-----------~KI~VIyNGVD~~rf~p~~~ 381 (578)
T PRK15490 320 KRLFKPEYEPLYQALAVVPGVDFMSNNHCVTRHYAD-------WLKLEA-----------KHFQVVYNGVLPPSTEPSSE 381 (578)
T ss_pred hhHHHHHHHHhhhhceeEecchhhhccHHHHHHHHH-------HhCCCH-----------HHEEEEeCCcchhhcCccch
Confidence 1111110011111112 22222222111000 112222 24689999999998887542
Q ss_pred HHHhhhhHHHHHH--HhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCccccccccc
Q 004942 423 REKRNLLRDSVRK--EMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLR 500 (722)
Q Consensus 423 ~ekr~~~r~~~R~--elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 500 (722)
.. ...|. ..++++++++|+++|++.+.||+..+++++..+.++.++
T Consensus 382 ~~------~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pd-------------------------- 429 (578)
T PRK15490 382 VP------HKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPA-------------------------- 429 (578)
T ss_pred hh------HHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCC--------------------------
Confidence 11 11222 234556678899999999999999999999988766554
Q ss_pred ccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhc
Q 004942 501 GRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGS 580 (722)
Q Consensus 501 G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~ 580 (722)
++|+++|+|+.++.++.++..
T Consensus 430 -----------------------------------------------------------irLvIVGdG~~~eeLk~la~e 450 (578)
T PRK15490 430 -----------------------------------------------------------TRFVLVGDGDLRAEAQKRAEQ 450 (578)
T ss_pred -----------------------------------------------------------eEEEEEeCchhHHHHHHHHHH
Confidence 578999999998888877753
Q ss_pred cCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCCh
Q 004942 581 VGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT 660 (722)
Q Consensus 581 ~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~ 660 (722)
. ++.++|.|+|..++++.+|+.+|+||+||. .|+||++++||||||+|||+|+.||.
T Consensus 451 l---------------------gL~d~V~FlG~~~Dv~~~LaaADVfVlPS~--~EGfp~vlLEAMA~GlPVVATdvGG~ 507 (578)
T PRK15490 451 L---------------------GILERILFVGASRDVGYWLQKMNVFILFSR--YEGLPNVLIEAQMVGVPVISTPAGGS 507 (578)
T ss_pred c---------------------CCCCcEEECCChhhHHHHHHhCCEEEEccc--ccCccHHHHHHHHhCCCEEEeCCCCc
Confidence 3 788899999999999999999999999997 89999999999999999999999999
Q ss_pred hhhhccCccEEEECCCCccHHHHHHHH---HHhhcCHHHHHHHHHHHHHHHHh-hcHHHHHHHHHC
Q 004942 661 KEIVEHNVTGLLHPPGHPGAQVLAQNL---RYLLKNPSVRERMAMEGRKKSNG-LAERHSLGRYCN 722 (722)
Q Consensus 661 ~EIVe~g~tGlLvp~~d~~~e~LA~aI---~~LL~np~~r~~mg~~grk~ve~-~~~~~~~~~Y~~ 722 (722)
+|+|.++.+|++++++|+ +++++++ ..++++.+.+..|+++|++.+++ |+++.+.++|.+
T Consensus 508 ~EiV~dG~nG~LVp~~D~--~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~k 571 (578)
T PRK15490 508 AECFIEGVSGFILDDAQT--VNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVK 571 (578)
T ss_pred HHHcccCCcEEEECCCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 999999999999999987 7888776 44556666677899999999965 999999999863
No 21
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=3.9e-30 Score=261.38 Aligned_cols=336 Identities=20% Similarity=0.216 Sum_probs=234.5
Q ss_pred EEEEEeCCC--CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEE-----EEcCCc--------c----
Q 004942 244 KFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKV-----LEDRGE--------P---- 304 (722)
Q Consensus 244 killI~hel--s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~V-----l~~~~~--------~---- 304 (722)
||++|++.+ ..||++..+.+||++|.+.||+|.+++........ ......++. ...... .
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPL-LVALNGVPVKLFSINVAYGLNLARYLFPPSLLA 79 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccc-hhhccCceeeecccchhhhhhhhhhccChhHHH
Confidence 588899988 79999999999999999999999999965443221 111111100 000000 0
Q ss_pred -chhhhcCccEEEECCchhhHhHH-HHHHhccCCCccEEEEEecchhHhH-------------HHHHhhhccccEEEEec
Q 004942 305 -SFKTSMKADLVIAGSAVCATWID-QYITRFPAGGSQVVWWIMENRREYF-------------DRAKLVLDRVKLLVFLS 369 (722)
Q Consensus 305 -~~~~~~k~DlVia~Sav~~~wi~-~~i~~~~~g~~~ivw~I~e~r~~yf-------------~~~k~~l~rvk~li~lS 369 (722)
......++|+|++++........ ..+... .+ .++++++|.....+. ......+...+.+++.+
T Consensus 80 ~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~-~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 157 (375)
T cd03821 80 WLRLNIREADIVHVHGLWSYPSLAAARAARK-YG-IPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHATS 157 (375)
T ss_pred HHHHhCCCCCEEEEecccchHHHHHHHHHHH-hC-CCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEECC
Confidence 11125689999988632211111 112211 22 235666553322111 01112223355566665
Q ss_pred HHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEE
Q 004942 370 ESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSL 449 (722)
Q Consensus 370 ~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~v 449 (722)
...... ..... + ...+.+||||+|.+.+.+.... .. |+.++...++++|+++
T Consensus 158 ~~~~~~---------~~~~~-~----------~~~~~vi~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~i~~~ 209 (375)
T cd03821 158 EQEAAE---------IRRLG-L----------KAPIAVIPNGVDIPPFAALPSR-------GR-RRKFPILPDKRIILFL 209 (375)
T ss_pred HHHHHH---------HHhhC-C----------cccEEEcCCCcChhccCcchhh-------hh-hhhccCCCCCcEEEEE
Confidence 443211 11111 1 1135899999999988765431 12 7778888889999999
Q ss_pred ecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccC
Q 004942 450 SSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLN 529 (722)
Q Consensus 450 Gri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 529 (722)
|++.+.||++.+++++..+.++.++
T Consensus 210 G~~~~~K~~~~li~a~~~l~~~~~~------------------------------------------------------- 234 (375)
T cd03821 210 GRLHPKKGLDLLIEAFAKLAERFPD------------------------------------------------------- 234 (375)
T ss_pred eCcchhcCHHHHHHHHHHhhhhcCC-------------------------------------------------------
Confidence 9999999999999999999876554
Q ss_pred CcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhH--HHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCc
Q 004942 530 EPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQ--QALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKA 607 (722)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~--~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~ 607 (722)
.+++++|.|+.. ..++.+ .+.+++.++
T Consensus 235 ------------------------------~~l~i~G~~~~~~~~~~~~~---------------------~~~~~~~~~ 263 (375)
T cd03821 235 ------------------------------WHLVIAGPDEGGYRAELKQI---------------------AAALGLEDR 263 (375)
T ss_pred ------------------------------eEEEEECCCCcchHHHHHHH---------------------HHhcCccce
Confidence 456777766432 222222 234478899
Q ss_pred EEeCCchh--hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHH
Q 004942 608 MLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQ 685 (722)
Q Consensus 608 V~f~G~~~--dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~ 685 (722)
|.|+|.++ ++.++|+.||++|+||. .|+||++++|||+||+|||+++.||..|++.+ .+|++.+.++ +++++
T Consensus 264 v~~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~ 337 (375)
T cd03821 264 VTFTGMLYGEDKAAALADADLFVLPSH--SENFGIVVAEALACGTPVVTTDKVPWQELIEY-GCGWVVDDDV---DALAA 337 (375)
T ss_pred EEEcCCCChHHHHHHHhhCCEEEeccc--cCCCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-CceEEeCCCh---HHHHH
Confidence 99999885 89999999999999997 79999999999999999999999999999998 7898887543 89999
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHH-HhhcHHHHHHHHHC
Q 004942 686 NLRYLLKNPSVRERMAMEGRKKS-NGLAERHSLGRYCN 722 (722)
Q Consensus 686 aI~~LL~np~~r~~mg~~grk~v-e~~~~~~~~~~Y~~ 722 (722)
+|..+++|++.+++|++++++.+ ++|+|+..+++|.+
T Consensus 338 ~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 375 (375)
T cd03821 338 ALRRALELPQRLKAMGENGRALVEERFSWTAIAQQLLE 375 (375)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhhC
Confidence 99999999999999999999995 66999999998864
No 22
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=2.4e-30 Score=279.48 Aligned_cols=325 Identities=18% Similarity=0.251 Sum_probs=233.1
Q ss_pred CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc----------------------chhh--
Q 004942 253 SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP----------------------SFKT-- 308 (722)
Q Consensus 253 s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~----------------------~~~~-- 308 (722)
..||++.++.++|+.|.. +|++++...+|-...+....|+.++..+... .+..
T Consensus 19 ~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (380)
T PRK15484 19 GAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEYTKVNDNCDIHYIGFSRIYKRLFQKWTRLDPLPYSQRILNIAHKF 95 (380)
T ss_pred cccHHHHHHHHhhhhccC---CeeEEEecCCCCCchhhccCCCceEEEEeccccchhhhhhhccCchhHHHHHHHHHHhc
Confidence 578999999999999943 9999997776423344556666665542211 1111
Q ss_pred -hcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHHHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhc
Q 004942 309 -SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKL 387 (722)
Q Consensus 309 -~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l 387 (722)
..++|+|++|... .+. ..+.....+. +++.++|.. + . ...+.+...+++.|+...+. . ..
T Consensus 96 ~~~~~~vi~v~~~~--~~~-~~~~~~~~~~-~~v~~~h~~---~-~--~~~~~~~~~ii~~S~~~~~~----~-----~~ 156 (380)
T PRK15484 96 TITKDSVIVIHNSM--KLY-RQIRERAPQA-KLVMHMHNA---F-E--PELLDKNAKIIVPSQFLKKF----Y-----EE 156 (380)
T ss_pred CCCCCcEEEEeCcH--HhH-HHHHhhCCCC-CEEEEEecc---c-C--hhHhccCCEEEEcCHHHHHH----H-----Hh
Confidence 3569999888633 222 2232322223 355555432 1 1 11234567788888886432 1 11
Q ss_pred cCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHH
Q 004942 388 RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQL 467 (722)
Q Consensus 388 ~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~ 467 (722)
.. + ...+.+||||+|.+.|.+... ..+++++++++++.+|+|+||+.+.||++.|++|++.
T Consensus 157 ~~-~----------~~~i~vIpngvd~~~~~~~~~--------~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~ 217 (380)
T PRK15484 157 RL-P----------NADISIVPNGFCLETYQSNPQ--------PNLRQQLNISPDETVLLYAGRISPDKGILLLMQAFEK 217 (380)
T ss_pred hC-C----------CCCEEEecCCCCHHHcCCcch--------HHHHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHH
Confidence 11 1 112589999999888876432 3457788988788899999999999999999999999
Q ss_pred hHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCC
Q 004942 468 MIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGN 547 (722)
Q Consensus 468 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (722)
+.++.|+
T Consensus 218 l~~~~p~------------------------------------------------------------------------- 224 (380)
T PRK15484 218 LATAHSN------------------------------------------------------------------------- 224 (380)
T ss_pred HHHhCCC-------------------------------------------------------------------------
Confidence 9877665
Q ss_pred CCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch--hhHHHHHHHcC
Q 004942 548 TDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAAD 625 (722)
Q Consensus 548 ~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~--~dv~~lysaAD 625 (722)
.+|+++|+|+.... .....|.+++.+.. +. +..+|.|+|.+ +++..+|++||
T Consensus 225 ------------~~lvivG~g~~~~~-----------~~~~~~~~~l~~~~-~~--l~~~v~~~G~~~~~~l~~~~~~aD 278 (380)
T PRK15484 225 ------------LKLVVVGDPTASSK-----------GEKAAYQKKVLEAA-KR--IGDRCIMLGGQPPEKMHNYYPLAD 278 (380)
T ss_pred ------------eEEEEEeCCccccc-----------cchhHHHHHHHHHH-Hh--cCCcEEEeCCCCHHHHHHHHHhCC
Confidence 45777787753211 01123333443322 22 23579999976 68999999999
Q ss_pred EEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEE-EECCCCccHHHHHHHHHHhhcCHHHHHHHHHHH
Q 004942 626 VYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGL-LHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEG 704 (722)
Q Consensus 626 v~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGl-Lvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~g 704 (722)
++|+||.+ .|+||++++||||||+|||+|+.||.+|++.++.+|+ ++++.|+ ++|+++|.++++|++. .+|++++
T Consensus 279 v~v~pS~~-~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~--~~la~~I~~ll~d~~~-~~~~~~a 354 (380)
T PRK15484 279 LVVVPSQV-EEAFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMTS--DSIISDINRTLADPEL-TQIAEQA 354 (380)
T ss_pred EEEeCCCC-ccccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCCH--HHHHHHHHHHHcCHHH-HHHHHHH
Confidence 99999973 6999999999999999999999999999999999998 5677887 9999999999999985 7899999
Q ss_pred HHHH-HhhcHHHHHHHHH
Q 004942 705 RKKS-NGLAERHSLGRYC 721 (722)
Q Consensus 705 rk~v-e~~~~~~~~~~Y~ 721 (722)
++.+ ++|+|+.++++|.
T Consensus 355 r~~~~~~fsw~~~a~~~~ 372 (380)
T PRK15484 355 KDFVFSKYSWEGVTQRFE 372 (380)
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 9887 5599999999885
No 23
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=3e-30 Score=258.66 Aligned_cols=326 Identities=25% Similarity=0.362 Sum_probs=240.7
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhC----CcEEEEcCCcc---------chhhhc
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR----KIKVLEDRGEP---------SFKTSM 310 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~----gI~Vl~~~~~~---------~~~~~~ 310 (722)
||+++++.+..||++..+.+|+++|.+.||+|.+++.............. ........... .+....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999966543322111110 01111111111 344477
Q ss_pred CccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHH-------HHHhhhccccEEEEecHHhHHHHhhHHHhh
Q 004942 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFD-------RAKLVLDRVKLLVFLSESQTKQWLTWCEEE 383 (722)
Q Consensus 311 k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~-------~~k~~l~rvk~li~lS~~~~~~~~~~~~~~ 383 (722)
+||+|++++. ...++...+.... ..++++|+|........ .....+...+.++++|+...+. +.
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~----~~-- 151 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARL--GTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKED----LL-- 151 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhc--CCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhh----HH--
Confidence 9999999976 3445544444433 34577788755433322 1233456688899998886443 11
Q ss_pred hhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHH
Q 004942 384 KLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVE 463 (722)
Q Consensus 384 ~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~Lle 463 (722)
+....+ ...+.+||+|+|...+.+..... ..++...+.+.++++|++.+.||++.+++
T Consensus 152 --~~~~~~----------~~~~~vi~~~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~~g~~~~~k~~~~~i~ 209 (353)
T cd03811 152 --KLLGIP----------PDKIEVIYNPIDIEEIRALAEEP----------LELGIPPDGPVILAVGRLSPQKGFDTLIR 209 (353)
T ss_pred --HhhcCC----------ccccEEecCCcChhhcCcccchh----------hhcCCCCCceEEEEEecchhhcChHHHHH
Confidence 111111 11348999999988876544210 03456677889999999999999999999
Q ss_pred HHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCccc
Q 004942 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (722)
Q Consensus 464 A~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (722)
+++.+.++.++
T Consensus 210 ~~~~l~~~~~~--------------------------------------------------------------------- 220 (353)
T cd03811 210 AFALLRKEGPD--------------------------------------------------------------------- 220 (353)
T ss_pred HHHHhhhcCCC---------------------------------------------------------------------
Confidence 99999765443
Q ss_pred ccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHH
Q 004942 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSA 623 (722)
Q Consensus 544 ~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysa 623 (722)
++++++|.|+..+.++.++... ++.++|.|+|..+++.++|+.
T Consensus 221 ----------------~~l~i~G~~~~~~~~~~~~~~~---------------------~~~~~v~~~g~~~~~~~~~~~ 263 (353)
T cd03811 221 ----------------ARLVILGDGPLREELEALAKEL---------------------GLADRVHFLGFQSNPYPYLKA 263 (353)
T ss_pred ----------------ceEEEEcCCccHHHHHHHHHhc---------------------CCCccEEEecccCCHHHHHHh
Confidence 4678889888777776655433 777899999999999999999
Q ss_pred cCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHH---HHHHHHhhcCHHHHHHH
Q 004942 624 ADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVL---AQNLRYLLKNPSVRERM 700 (722)
Q Consensus 624 ADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~L---A~aI~~LL~np~~r~~m 700 (722)
||++++||. .|++|++++|||++|+|||+++.||..|++.++.+|+++++.++ +++ ++++..++++++.+++|
T Consensus 264 ~d~~i~ps~--~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~ 339 (353)
T cd03811 264 ADLFVLSSR--YEGFPNVLLEAMALGTPVVATDCPGPREILEDGENGLLVPVGDE--AALAAAALALLDLLLDPELRERL 339 (353)
T ss_pred CCEEEeCcc--cCCCCcHHHHHHHhCCCEEEcCCCChHHHhcCCCceEEECCCCH--HHHHHHHHHHHhccCChHHHHHH
Confidence 999999997 79999999999999999999999999999999999999999988 888 78888888999999999
Q ss_pred HHHHHHHHHh
Q 004942 701 AMEGRKKSNG 710 (722)
Q Consensus 701 g~~grk~ve~ 710 (722)
+.++++.+.+
T Consensus 340 ~~~~~~~~~~ 349 (353)
T cd03811 340 AAAARERVAR 349 (353)
T ss_pred HHHHHHHHHH
Confidence 9977776653
No 24
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=1.3e-30 Score=277.40 Aligned_cols=326 Identities=12% Similarity=0.126 Sum_probs=222.8
Q ss_pred cEEEEEeCCC-CCCcHHHHHHHHHHHHHhC--CCEEEEEEEcCCCCChhHHHhCCc----EEEEcC---Ccc------ch
Q 004942 243 RKFILIFHEL-SMTGAPLSMMELATELLSC--GATVSAVVLSKRGGLMPELARRKI----KVLEDR---GEP------SF 306 (722)
Q Consensus 243 kkillI~hel-s~gGaplsm~eLA~eL~s~--G~~VsvV~ls~~g~l~~el~~~gI----~Vl~~~---~~~------~~ 306 (722)
.||+++++.+ ..||++..+.+++++|.+. |++|.+++..... ....+...++ +..... ... ++
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKM-DKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSKW 79 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCC-ChHHHHhcchhcccccchhhhhcccHHHHHHHHH
Confidence 4788888876 4699999999999999999 8999888854332 2222332221 111111 111 34
Q ss_pred hhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHHHHHhhhccccEEEEecHHhHHHHhhHHHhhhhh
Q 004942 307 KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLK 386 (722)
Q Consensus 307 ~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~ 386 (722)
.++.+||+||+++..+. +..............+++|.|.............+...+.++++|+...+. . .+
T Consensus 80 l~~~~~Dii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~i~~S~~~~~~----~----~~ 150 (359)
T PRK09922 80 LKETQPDIVICIDVISC-LYANKARKKSGKQFKIFSWPHFSLDHKKHAECKKITCADYHLAISSGIKEQ----M----MA 150 (359)
T ss_pred HHhcCCCEEEEcCHHHH-HHHHHHHHHhCCCCeEEEEecCcccccchhhhhhhhcCCEEEEcCHHHHHH----H----HH
Confidence 45789999999975533 332333332222233555655322111111111235678888888886332 1 11
Q ss_pred ccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCC--CCCCHHHHHHH
Q 004942 387 LRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN--PGKGQLLLVES 464 (722)
Q Consensus 387 l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~--~~Kg~~~LleA 464 (722)
.+..+ ..+.+||||+|.+.+...... .++++.++++||+. +.||++.++++
T Consensus 151 ~~~~~-----------~ki~vi~N~id~~~~~~~~~~----------------~~~~~~i~~~Grl~~~~~k~~~~l~~a 203 (359)
T PRK09922 151 RGISA-----------QRISVIYNPVEIKTIIIPPPE----------------RDKPAVFLYVGRLKFEGQKNVKELFDG 203 (359)
T ss_pred cCCCH-----------HHEEEEcCCCCHHHccCCCcc----------------cCCCcEEEEEEEEecccCcCHHHHHHH
Confidence 22211 135899999996554321110 13467899999996 46999999999
Q ss_pred HHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccc
Q 004942 465 AQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTS 544 (722)
Q Consensus 465 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (722)
+..+.. +
T Consensus 204 ~~~~~~---~---------------------------------------------------------------------- 210 (359)
T PRK09922 204 LSQTTG---E---------------------------------------------------------------------- 210 (359)
T ss_pred HHhhCC---C----------------------------------------------------------------------
Confidence 987621 1
Q ss_pred cCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchh----hHHHH
Q 004942 545 IGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT----RVASL 620 (722)
Q Consensus 545 ~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~----dv~~l 620 (722)
++++++|+|++.+.++.++.. ++++++|.|+|.++ .+.++
T Consensus 211 ---------------~~l~ivG~g~~~~~l~~~~~~---------------------~~l~~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 211 ---------------WQLHIIGDGSDFEKCKAYSRE---------------------LGIEQRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred ---------------eEEEEEeCCccHHHHHHHHHH---------------------cCCCCeEEEecccCCcHHHHHHH
Confidence 568899999988887776643 37889999999764 57788
Q ss_pred HHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcC-CCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHH--H
Q 004942 621 YSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD-AGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSV--R 697 (722)
Q Consensus 621 ysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd-~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~--r 697 (722)
|..||++|+||. .|+||++++||||||+|||+|+ .||..|+|.++.+|++++++|+ ++++++|..+++|++. .
T Consensus 255 ~~~~d~~v~~s~--~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~--~~la~~i~~l~~~~~~~~~ 330 (359)
T PRK09922 255 IKNVSALLLTSK--FEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKPGLNGELYTPGNI--DEFVGKLNKVISGEVKYQH 330 (359)
T ss_pred HhcCcEEEECCc--ccCcChHHHHHHHcCCCEEEeCCCCChHHHccCCCceEEECCCCH--HHHHHHHHHHHhCcccCCH
Confidence 888999999997 8999999999999999999999 8999999999999999999998 9999999999999984 4
Q ss_pred HHHHHHHHHHHHhhcHHHHHH
Q 004942 698 ERMAMEGRKKSNGLAERHSLG 718 (722)
Q Consensus 698 ~~mg~~grk~ve~~~~~~~~~ 718 (722)
..++.++++..++.+.+...+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~ 351 (359)
T PRK09922 331 DAIPNSIERFYEVLYFKNLNN 351 (359)
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 455555555544433333333
No 25
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.98 E-value=1e-29 Score=262.28 Aligned_cols=329 Identities=23% Similarity=0.276 Sum_probs=236.9
Q ss_pred EEEEEeCCCC--CCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc---------ch-----h
Q 004942 244 KFILIFHELS--MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP---------SF-----K 307 (722)
Q Consensus 244 killI~hels--~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~---------~~-----~ 307 (722)
||++|++... .||++..+.+|+++|.++||+|.+++...... .......++++...+... .+ .
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPK-GRDEERNGHRVIRAPSLLNVASTPFSPSFFKQLKK 79 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCc-chhhhccCceEEEeecccccccccccHHHHHHHHh
Confidence 5788887775 69999999999999999999999999654333 333344555555443221 11 2
Q ss_pred hhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecch------hHhHH-HHHhhhccccEEEEecHHhHHHHhhHH
Q 004942 308 TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR------REYFD-RAKLVLDRVKLLVFLSESQTKQWLTWC 380 (722)
Q Consensus 308 ~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r------~~yf~-~~k~~l~rvk~li~lS~~~~~~~~~~~ 380 (722)
...+||+||+++......+...+. ..+.+ .++++|... ..++. ..+..+..++.+++.|+...+. .
T Consensus 80 ~~~~~Dii~~~~~~~~~~~~~~~~--~~~~~-~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~----~ 152 (357)
T cd03795 80 LAKKADVIHLHFPNPLADLALLLL--PRKKP-VVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAET----S 152 (357)
T ss_pred cCCCCCEEEEecCcchHHHHHHHh--ccCce-EEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHH----H
Confidence 267999999886443222111111 12333 444444311 01111 1223455678888888875331 1
Q ss_pred HhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHH
Q 004942 381 EEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLL 460 (722)
Q Consensus 381 ~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~ 460 (722)
...... . ..+.+||+|+|+..+.+..... . .......+++.|+++|++.+.||++.
T Consensus 153 -----~~~~~~-------~---~~~~~i~~gi~~~~~~~~~~~~------~---~~~~~~~~~~~i~~~G~~~~~K~~~~ 208 (357)
T cd03795 153 -----PVLRRF-------R---DKVRVIPLGLDPARYPRPDALE------E---AIWRRAAGRPFFLFVGRLVYYKGLDV 208 (357)
T ss_pred -----HHhcCC-------c---cceEEecCCCChhhcCCcchhh------h---HhhcCCCCCcEEEEecccccccCHHH
Confidence 111111 0 1247999999998887654310 1 22344566789999999999999999
Q ss_pred HHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCC
Q 004942 461 LVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPS 540 (722)
Q Consensus 461 LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (722)
+++|++.+. +
T Consensus 209 li~a~~~l~----~------------------------------------------------------------------ 218 (357)
T cd03795 209 LLEAAAALP----D------------------------------------------------------------------ 218 (357)
T ss_pred HHHHHHhcc----C------------------------------------------------------------------
Confidence 999999874 2
Q ss_pred cccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch--hhHH
Q 004942 541 LFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVA 618 (722)
Q Consensus 541 ~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~--~dv~ 618 (722)
++++++|+|+....++.++. ..++.++|.|+|.+ +++.
T Consensus 219 -------------------~~l~i~G~g~~~~~~~~~~~---------------------~~~~~~~V~~~g~v~~~~~~ 258 (357)
T cd03795 219 -------------------APLVIVGEGPLEAELEALAA---------------------ALGLLDRVRFLGRLDDEEKA 258 (357)
T ss_pred -------------------cEEEEEeCChhHHHHHHHHH---------------------hcCCcceEEEcCCCCHHHHH
Confidence 46788899987766665552 23778899999987 5699
Q ss_pred HHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc-CccEEEECCCCccHHHHHHHHHHhhcCHHHH
Q 004942 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH-NVTGLLHPPGHPGAQVLAQNLRYLLKNPSVR 697 (722)
Q Consensus 619 ~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~-g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r 697 (722)
.+|+.||++++||....|+||++++|||+||+|||+|+.|+..+.+.+ +.+|++++++|+ ++++++|..+++|++.+
T Consensus 259 ~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~--~~~~~~i~~l~~~~~~~ 336 (357)
T cd03795 259 ALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVVPPGDP--AALAEAIRRLLEDPELR 336 (357)
T ss_pred HHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhhCCCceEEeCCCCH--HHHHHHHHHHHHCHHHH
Confidence 999999999999964369999999999999999999999999998886 899999999998 99999999999999999
Q ss_pred HHHHHHHHHHHHh-hcHHHH
Q 004942 698 ERMAMEGRKKSNG-LAERHS 716 (722)
Q Consensus 698 ~~mg~~grk~ve~-~~~~~~ 716 (722)
++|+.++++.+++ |+++.+
T Consensus 337 ~~~~~~~~~~~~~~~s~~~~ 356 (357)
T cd03795 337 ERLGEAARERAEEEFTADRM 356 (357)
T ss_pred HHHHHHHHHHHHHhcchHhh
Confidence 9999999999966 666654
No 26
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.98 E-value=7.9e-30 Score=256.90 Aligned_cols=331 Identities=24% Similarity=0.320 Sum_probs=243.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc----------------chh
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP----------------SFK 307 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~----------------~~~ 307 (722)
||+++++. .||....+.+|+++|.+.||+|.+++....... .+...++.++..+... .+.
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE--ELEALGVKVIPIPLDRRGINPFKDLKALLRLYRLL 76 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc--ccccCCceEEeccccccccChHhHHHHHHHHHHHH
Confidence 57888887 789999999999999999999999985543322 4556788877665432 223
Q ss_pred hhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhH---------hHHH-HHhhhccccEEEEecHHhHHHHh
Q 004942 308 TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE---------YFDR-AKLVLDRVKLLVFLSESQTKQWL 377 (722)
Q Consensus 308 ~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~---------yf~~-~k~~l~rvk~li~lS~~~~~~~~ 377 (722)
...+||+|++++... .+......+. ...+.++++++..... ++.. .+..+...+.+++.|+...+.
T Consensus 77 ~~~~~dvv~~~~~~~-~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~-- 152 (359)
T cd03808 77 RKERPDIVHTHTPKP-GILGRLAARL-AGVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDL-- 152 (359)
T ss_pred HhcCCCEEEEccccc-hhHHHHHHHH-cCCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcCHHHHHH--
Confidence 367999999885432 2222222332 2344566655432111 1111 123344577889998886442
Q ss_pred hHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCC
Q 004942 378 TWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKG 457 (722)
Q Consensus 378 ~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg 457 (722)
.. .....+ ....+.++|+++|...+.+.... ..++.+.|+++|++.+.||
T Consensus 153 --~~----~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~~~G~~~~~k~ 202 (359)
T cd03808 153 --AL----KLGIIK---------KKKTVLIPGSGVDLDRFSPSPEP---------------IPEDDPVFLFVARLLKDKG 202 (359)
T ss_pred --HH----HhcCCC---------cCceEEecCCCCChhhcCccccc---------------cCCCCcEEEEEeccccccC
Confidence 11 111100 01234678899988777654320 2346789999999999999
Q ss_pred HHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCC
Q 004942 458 QLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLL 537 (722)
Q Consensus 458 ~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (722)
++.++++++.+.++.++
T Consensus 203 ~~~li~~~~~l~~~~~~--------------------------------------------------------------- 219 (359)
T cd03808 203 IDELLEAARILKAKGPN--------------------------------------------------------------- 219 (359)
T ss_pred HHHHHHHHHHHHhcCCC---------------------------------------------------------------
Confidence 99999999999765444
Q ss_pred CCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHh-hhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhh
Q 004942 538 SPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKIL-IGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTR 616 (722)
Q Consensus 538 ~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~l-I~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~d 616 (722)
++++++|.|+........ + +..+...+|.|+|..++
T Consensus 220 ----------------------~~l~i~G~~~~~~~~~~~~~---------------------~~~~~~~~v~~~g~~~~ 256 (359)
T cd03808 220 ----------------------VRLLLVGDGDEENPAAILEI---------------------EKLGLEGRVEFLGFRDD 256 (359)
T ss_pred ----------------------eEEEEEcCCCcchhhHHHHH---------------------HhcCCcceEEEeecccc
Confidence 467777777655444332 2 12266789999999999
Q ss_pred HHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHH
Q 004942 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSV 696 (722)
Q Consensus 617 v~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~ 696 (722)
+.++|+.||++++||. .|++|++++|||+||+|||+|+.++..|++.++.+|++++++|+ ++++++|..++.|++.
T Consensus 257 ~~~~~~~adi~i~ps~--~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~--~~~~~~i~~l~~~~~~ 332 (359)
T cd03808 257 VPELLAAADVFVLPSY--REGLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLVPPGDA--EALADAIERLIEDPEL 332 (359)
T ss_pred HHHHHHhccEEEecCc--ccCcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEEECCCCH--HHHHHHHHHHHhCHHH
Confidence 9999999999999997 79999999999999999999999999999999999999999988 9999999999999999
Q ss_pred HHHHHHHHHHHH-HhhcHHHHHHHHHC
Q 004942 697 RERMAMEGRKKS-NGLAERHSLGRYCN 722 (722)
Q Consensus 697 r~~mg~~grk~v-e~~~~~~~~~~Y~~ 722 (722)
+++|++++++.+ ++|+++..+++|.+
T Consensus 333 ~~~~~~~~~~~~~~~~s~~~~~~~~~~ 359 (359)
T cd03808 333 RARMGQAARKRAEEEFDEEIVVKKLLE 359 (359)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHhhC
Confidence 999999999995 66999999998864
No 27
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.98 E-value=1.7e-29 Score=267.31 Aligned_cols=336 Identities=19% Similarity=0.263 Sum_probs=235.6
Q ss_pred EEEEEeCCCC---CCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--------------ch
Q 004942 244 KFILIFHELS---MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--------------SF 306 (722)
Q Consensus 244 killI~hels---~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--------------~~ 306 (722)
||++|++... .||++..+.+||++|.+. ++|.|++.... . ....|++++..+... .+
T Consensus 2 kI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (388)
T TIGR02149 2 KVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQ-R----FDSEGLTVKGYRPWSELKEANKALGTFSVDL 75 (388)
T ss_pred eeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCc-h----hcCCCeEEEEecChhhccchhhhhhhhhHHH
Confidence 6888888774 499999999999999886 77777774332 1 335577776443221 01
Q ss_pred h---hhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchh-------------HhHHH-HHhhhccccEEEEec
Q 004942 307 K---TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR-------------EYFDR-AKLVLDRVKLLVFLS 369 (722)
Q Consensus 307 ~---~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~-------------~yf~~-~k~~l~rvk~li~lS 369 (722)
. ...++|+||+++... . +...++....+.+ +++.+|.... .++.. ....+..++.++++|
T Consensus 76 ~~~~~~~~~divh~~~~~~-~-~~~~~~~~~~~~p-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S 152 (388)
T TIGR02149 76 AMANDPVDADVVHSHTWYT-F-LAGHLAKKLYDKP-LVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEAADRVIAVS 152 (388)
T ss_pred HHhhCCCCCCeEeecchhh-h-hHHHHHHHhcCCC-EEEEeecccccccccccccccchhHHHHHHHHHHhhCCEEEEcc
Confidence 1 134799998886321 1 2223333334444 5555654210 01111 123445688899999
Q ss_pred HHhHHHHhhHHHhhhhhc-cCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEE
Q 004942 370 ESQTKQWLTWCEEEKLKL-RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLS 448 (722)
Q Consensus 370 ~~~~~~~~~~~~~~~i~l-~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~ 448 (722)
+...+. ... .. +.. ...+.+||||+|...+.+... ...+++++++.+.++|+|
T Consensus 153 ~~~~~~----~~~---~~~~~~-----------~~~i~vi~ng~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~ 206 (388)
T TIGR02149 153 GGMRED----ILK---YYPDLD-----------PEKVHVIYNGIDTKEYKPDDG--------NVVLDRYGIDRSRPYILF 206 (388)
T ss_pred HHHHHH----HHH---HcCCCC-----------cceEEEecCCCChhhcCCCch--------HHHHHHhCCCCCceEEEE
Confidence 886332 100 01 111 123579999999988876432 456788999888889999
Q ss_pred EecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhcc
Q 004942 449 LSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQL 528 (722)
Q Consensus 449 vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~ 528 (722)
+||+.+.||++.|++|++.+.. +
T Consensus 207 ~Grl~~~Kg~~~li~a~~~l~~---~------------------------------------------------------ 229 (388)
T TIGR02149 207 VGRITRQKGVPHLLDAVHYIPK---D------------------------------------------------------ 229 (388)
T ss_pred EcccccccCHHHHHHHHHHHhh---c------------------------------------------------------
Confidence 9999999999999999998731 1
Q ss_pred CCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCC-CCc
Q 004942 529 NEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNL-SKA 607 (722)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L-~~~ 607 (722)
.+++++|.|+....+...+ .+.+.+ ++. .++
T Consensus 230 -------------------------------~~l~i~g~g~~~~~~~~~~----------------~~~~~~-~~~~~~~ 261 (388)
T TIGR02149 230 -------------------------------VQVVLCAGAPDTPEVAEEV----------------RQAVAL-LDRNRTG 261 (388)
T ss_pred -------------------------------CcEEEEeCCCCcHHHHHHH----------------HHHHHH-hccccCc
Confidence 2456666665443332222 111111 133 245
Q ss_pred EEeC-Cc--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccH----
Q 004942 608 MLWT-PA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGA---- 680 (722)
Q Consensus 608 V~f~-G~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~---- 680 (722)
|.|. |. .+++..+|++||++|+||. .|+||++++||||||+|||+|+.||.+|+++++.+|+++++++++.
T Consensus 262 v~~~~~~~~~~~~~~~~~~aDv~v~ps~--~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~~~~~ 339 (388)
T TIGR02149 262 IIWINKMLPKEELVELLSNAEVFVCPSI--YEPLGIVNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPDNSDADGFQ 339 (388)
T ss_pred eEEecCCCCHHHHHHHHHhCCEEEeCCc--cCCCChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEcCCCCCcccchH
Confidence 7765 43 4789999999999999997 8999999999999999999999999999999999999999877522
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHH-hhcHHHHHHHHH
Q 004942 681 QVLAQNLRYLLKNPSVRERMAMEGRKKSN-GLAERHSLGRYC 721 (722)
Q Consensus 681 e~LA~aI~~LL~np~~r~~mg~~grk~ve-~~~~~~~~~~Y~ 721 (722)
++|+++|..+++||+.+++|++++++.+. +|+|+.++++|.
T Consensus 340 ~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 381 (388)
T TIGR02149 340 AELAKAINILLADPELAKKMGIAGRKRAEEEFSWGSIAKKTV 381 (388)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 68999999999999999999999999884 599999999875
No 28
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.98 E-value=9.7e-30 Score=260.09 Aligned_cols=328 Identities=22% Similarity=0.299 Sum_probs=236.2
Q ss_pred EEEEEeCCC--CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEE----------EEc--CCcc---ch
Q 004942 244 KFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKV----------LED--RGEP---SF 306 (722)
Q Consensus 244 killI~hel--s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~V----------l~~--~~~~---~~ 306 (722)
||++|++.. ..||++..+.+||++|.+.||+|.+++......... . ...+.+ ... .... .+
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEG-P-ARVVPVPSVPLPGYPEIRLALPPRRRVRRL 78 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccC-C-CCceeecccccCcccceEecccchhhHHHH
Confidence 577777666 348999999999999999999999999543321100 0 011111 000 0111 33
Q ss_pred hhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHHH-------------HHhhhccccEEEEecHHhH
Q 004942 307 KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDR-------------AKLVLDRVKLLVFLSESQT 373 (722)
Q Consensus 307 ~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~-------------~k~~l~rvk~li~lS~~~~ 373 (722)
....+||+||+++.....|+...+.. ..+. ++++++|.....+... .+......+.+++.|+...
T Consensus 79 ~~~~~pdii~~~~~~~~~~~~~~~~~-~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~ 156 (364)
T cd03814 79 LDAFAPDVVHIATPGPLGLAALRAAR-RLGI-PVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLA 156 (364)
T ss_pred HHhcCCCEEEEeccchhhHHHHHHHH-HcCC-CEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHH
Confidence 34779999998865433333322222 2223 3666666433222111 1122344677788777752
Q ss_pred HHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCC
Q 004942 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (722)
Q Consensus 374 ~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~ 453 (722)
+. . .... ...+.++|+|+|.+.|.+.... ...+++++ ..+.+.++++|++.
T Consensus 157 ~~----~----~~~~-------------~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~-~~~~~~i~~~G~~~ 207 (364)
T cd03814 157 DE----L----RARG-------------FRRVRLWPRGVDTELFHPRRRD-------EALRARLG-PPDRPVLLYVGRLA 207 (364)
T ss_pred HH----H----hccC-------------CCceeecCCCccccccCccccc-------HHHHHHhC-CCCCeEEEEEeccc
Confidence 21 1 0111 1124789999999888765421 22345555 45677899999999
Q ss_pred CCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCccc
Q 004942 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (722)
Q Consensus 454 ~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (722)
+.||++.++++++.+.++ ++
T Consensus 208 ~~k~~~~~i~~~~~l~~~-~~----------------------------------------------------------- 227 (364)
T cd03814 208 PEKNLEALLDADLPLRRR-PP----------------------------------------------------------- 227 (364)
T ss_pred cccCHHHHHHHHHHhhhc-CC-----------------------------------------------------------
Confidence 999999999999999765 44
Q ss_pred ccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCc
Q 004942 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (722)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~ 613 (722)
++++++|+|+..+.++ +..++|.|+|.
T Consensus 228 --------------------------~~l~i~G~~~~~~~~~---------------------------~~~~~v~~~g~ 254 (364)
T cd03814 228 --------------------------VRLVIVGDGPARARLE---------------------------ARYPNVHFLGF 254 (364)
T ss_pred --------------------------ceEEEEeCCchHHHHh---------------------------ccCCcEEEEec
Confidence 4678888887765554 22468999994
Q ss_pred --hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhh
Q 004942 614 --TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL 691 (722)
Q Consensus 614 --~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL 691 (722)
.+++.++|+.||++++||. .|+||++++||||||+|||+++.|+..|+++++.+|+++++.+. ++++++|..++
T Consensus 255 ~~~~~~~~~~~~~d~~l~~s~--~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~--~~l~~~i~~l~ 330 (364)
T cd03814 255 LDGEELAAAYASADVFVFPSR--TETFGLVVLEAMASGLPVVAPDAGGPADIVTDGENGLLVEPGDA--EAFAAALAALL 330 (364)
T ss_pred cCHHHHHHHHHhCCEEEECcc--cccCCcHHHHHHHcCCCEEEcCCCCchhhhcCCcceEEcCCCCH--HHHHHHHHHHH
Confidence 5789999999999999997 89999999999999999999999999999999899999999998 89999999999
Q ss_pred cCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 692 KNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 692 ~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
+|++.+++|++++++.+++|+|+..+++|.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (364)
T cd03814 331 ADPELRRRMAARARAEAERRSWEAFLDNLL 360 (364)
T ss_pred cCHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 999999999999999998899999999875
No 29
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.98 E-value=2.6e-30 Score=286.67 Aligned_cols=352 Identities=17% Similarity=0.196 Sum_probs=241.5
Q ss_pred cEEEEEeCCC----CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhH---------H----------HhCCcEEEE
Q 004942 243 RKFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE---------L----------ARRKIKVLE 299 (722)
Q Consensus 243 kkillI~hel----s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~e---------l----------~~~gI~Vl~ 299 (722)
.||++|+.|. ..||...++.+|+++|.+.||+|.|+++..+. +... . ...|++|+.
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~ 79 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPA-IREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYL 79 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcc-hhhhhcCceEEEEeeeEEEEEEeEEcCCceEEE
Confidence 3789999885 48999999999999999999999999965432 2211 1 236788875
Q ss_pred cCCcc---------------c---hh-------h--hcCccEEEECCchhhHhHHHHHHhcc---CCCccEEEEEecchh
Q 004942 300 DRGEP---------------S---FK-------T--SMKADLVIAGSAVCATWIDQYITRFP---AGGSQVVWWIMENRR 349 (722)
Q Consensus 300 ~~~~~---------------~---~~-------~--~~k~DlVia~Sav~~~wi~~~i~~~~---~g~~~ivw~I~e~r~ 349 (722)
++... + |. . ..+||+||+|.-. +..+..++.+.. ....+++..+|....
T Consensus 80 v~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~-~~~~~~~l~~~~~~~~~~~~~v~TiH~~~~ 158 (466)
T PRK00654 80 IDAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWH-TGLIPALLKEKYWRGYPDIKTVFTIHNLAY 158 (466)
T ss_pred EeCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcH-HHHHHHHHHHhhhccCCCCCEEEEcCCCcC
Confidence 53211 1 11 1 2499999888532 223333333221 112346777764310
Q ss_pred H----------------hH-----------HHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCccc
Q 004942 350 E----------------YF-----------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDEL 402 (722)
Q Consensus 350 ~----------------yf-----------~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~ 402 (722)
. ++ ...+..+...+.++++|+...+.... .....+... +.... .
T Consensus 159 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~----~~~~~gl~~-~~~~~----~ 229 (466)
T PRK00654 159 QGLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITT----PEFGYGLEG-LLRAR----S 229 (466)
T ss_pred CCcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhcc----ccCCcChHH-HHHhc----c
Confidence 0 00 01112345578888888875332100 000000000 00000 1
Q ss_pred ceEEeecCCCCCCCCCchhHH-----------HHhhhhHHHHHHHhCCCC-CCEEEEEEecCCCCCCHHHHHHHHHHhHH
Q 004942 403 AFVAGFTCSLNTPTSSPEKMR-----------EKRNLLRDSVRKEMGLTD-QDMLVLSLSSINPGKGQLLLVESAQLMIE 470 (722)
Q Consensus 403 ~~v~vIpngid~~~f~~~~~~-----------ekr~~~r~~~R~elgl~~-~~~lIl~vGri~~~Kg~~~LleA~~~L~~ 470 (722)
..+.+||||+|++.|.|.... +.+...+..+|+++|+++ +.++|+++||+.+.||++.|++|++.+.+
T Consensus 230 ~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~ 309 (466)
T PRK00654 230 GKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLE 309 (466)
T ss_pred cCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHh
Confidence 135899999999998774310 111223567899999985 57899999999999999999999999864
Q ss_pred hCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCc
Q 004942 471 QEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDA 550 (722)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (722)
+ +
T Consensus 310 ~--~---------------------------------------------------------------------------- 311 (466)
T PRK00654 310 Q--G---------------------------------------------------------------------------- 311 (466)
T ss_pred c--C----------------------------------------------------------------------------
Confidence 3 2
Q ss_pred cccCCcccceeEEEcCCchh--HHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEE-eCCchhh-HHHHHHHcCE
Q 004942 551 VSFGSGHLRRKVLSKSDGKQ--QQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML-WTPATTR-VASLYSAADV 626 (722)
Q Consensus 551 ~~~g~~~~~~~lli~G~G~~--~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~-f~G~~~d-v~~lysaADv 626 (722)
.+|+++|+|+. .+.++.++. .++ .++. +.|...+ +..+|++||+
T Consensus 312 ---------~~lvivG~g~~~~~~~l~~l~~---------------------~~~--~~v~~~~g~~~~~~~~~~~~aDv 359 (466)
T PRK00654 312 ---------GQLVLLGTGDPELEEAFRALAA---------------------RYP--GKVGVQIGYDEALAHRIYAGADM 359 (466)
T ss_pred ---------CEEEEEecCcHHHHHHHHHHHH---------------------HCC--CcEEEEEeCCHHHHHHHHhhCCE
Confidence 45788888863 344444442 223 3454 5676544 6789999999
Q ss_pred EEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccC------ccEEEECCCCccHHHHHHHHHHhhc---CHHHH
Q 004942 627 YVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHN------VTGLLHPPGHPGAQVLAQNLRYLLK---NPSVR 697 (722)
Q Consensus 627 ~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g------~tGlLvp~~d~~~e~LA~aI~~LL~---np~~r 697 (722)
+|+||. .|+||++++|||+||+|+|++++||++|+|.++ .+|++++++|+ ++|+++|.++++ |++.+
T Consensus 360 ~v~PS~--~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~--~~la~~i~~~l~~~~~~~~~ 435 (466)
T PRK00654 360 FLMPSR--FEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNA--EDLLRALRRALELYRQPPLW 435 (466)
T ss_pred EEeCCC--CCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCH--HHHHHHHHHHHHHhcCHHHH
Confidence 999997 999999999999999999999999999999887 89999999998 999999999876 78888
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 698 ERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 698 ~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
++|+.++.+ ++|+|+.++++|.
T Consensus 436 ~~~~~~~~~--~~fsw~~~a~~~~ 457 (466)
T PRK00654 436 RALQRQAMA--QDFSWDKSAEEYL 457 (466)
T ss_pred HHHHHHHhc--cCCChHHHHHHHH
Confidence 999888764 5799999999986
No 30
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.98 E-value=9.7e-30 Score=265.68 Aligned_cols=328 Identities=23% Similarity=0.253 Sum_probs=237.2
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCc-----------------cchh
Q 004942 245 FILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE-----------------PSFK 307 (722)
Q Consensus 245 illI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~-----------------~~~~ 307 (722)
|+++ .+...++++..+.++++.|. |++|.+++....+.........++.++..... ..+.
T Consensus 2 ~~~~-~~~~~~~~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (367)
T cd05844 2 VLIF-RPLLLAPSETFVRNQAEALR--RFRPVYVGGRRLGPAPLGALAVRLADLAGGKAGLRLGALRLLTGSAPQLRRLL 78 (367)
T ss_pred EEEE-eCCCCCCchHHHHHHHHhcc--cCCcEEEEeeccCCCCCcccceeeeecccchhHHHHHHHHhccccccHHHHHH
Confidence 4444 44555559999999999994 88898888665544333333344443311100 0234
Q ss_pred hhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecch----hH---------hHHHHHhhhccccEEEEecHHhHH
Q 004942 308 TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR----RE---------YFDRAKLVLDRVKLLVFLSESQTK 374 (722)
Q Consensus 308 ~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r----~~---------yf~~~k~~l~rvk~li~lS~~~~~ 374 (722)
++.+||+||++.... .+....+.. ..+.+ +++.+|... .. +.......+...+.++++|+...+
T Consensus 79 ~~~~~dvvh~~~~~~-~~~~~~~~~-~~~~p-~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 155 (367)
T cd05844 79 RRHRPDLVHAHFGFD-GVYALPLAR-RLGVP-LVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVSQFIRD 155 (367)
T ss_pred HhhCCCEEEeccCch-HHHHHHHHH-HcCCC-EEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECCHHHHH
Confidence 578999999885432 222222222 23333 555444211 00 111122334557889999988643
Q ss_pred HHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCC
Q 004942 375 QWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINP 454 (722)
Q Consensus 375 ~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~ 454 (722)
. . ...+..+ ..+.++|||+|...|.+... ..+++.++++|++.+
T Consensus 156 ~----~----~~~~~~~-----------~~i~vi~~g~d~~~~~~~~~-----------------~~~~~~i~~~G~~~~ 199 (367)
T cd05844 156 R----L----LALGFPP-----------EKVHVHPIGVDTAKFTPATP-----------------ARRPPRILFVGRFVE 199 (367)
T ss_pred H----H----HHcCCCH-----------HHeEEecCCCCHHhcCCCCC-----------------CCCCcEEEEEEeecc
Confidence 2 2 1112211 13579999999887765432 234668999999999
Q ss_pred CCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccc
Q 004942 455 GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRK 534 (722)
Q Consensus 455 ~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (722)
.||++.+++|+..+.++.++
T Consensus 200 ~K~~~~li~a~~~l~~~~~~------------------------------------------------------------ 219 (367)
T cd05844 200 KKGPLLLLEAFARLARRVPE------------------------------------------------------------ 219 (367)
T ss_pred ccChHHHHHHHHHHHHhCCC------------------------------------------------------------
Confidence 99999999999999876554
Q ss_pred cCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch
Q 004942 535 NLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT 614 (722)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~ 614 (722)
.+|+++|+|+..+.++.++... ++.++|.|+|.+
T Consensus 220 -------------------------~~l~ivG~g~~~~~~~~~~~~~---------------------~~~~~v~~~g~~ 253 (367)
T cd05844 220 -------------------------VRLVIIGDGPLLAALEALARAL---------------------GLGGRVTFLGAQ 253 (367)
T ss_pred -------------------------eEEEEEeCchHHHHHHHHHHHc---------------------CCCCeEEECCCC
Confidence 5688999998877777666433 677899999987
Q ss_pred --hhHHHHHHHcCEEEEcCCC----CCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHH
Q 004942 615 --TRVASLYSAADVYVINSQG----LGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLR 688 (722)
Q Consensus 615 --~dv~~lysaADv~V~pS~~----l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~ 688 (722)
+++..+|+.||++|+||.. ..|+||++++||||||+|||+++.||..|++.++.+|++++++|+ ++++++|.
T Consensus 254 ~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~d~--~~l~~~i~ 331 (367)
T cd05844 254 PHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLLVPEGDV--AALAAALG 331 (367)
T ss_pred CHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheecCCeeEEECCCCH--HHHHHHHH
Confidence 6799999999999999961 149999999999999999999999999999999999999999988 99999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHH-hhcHHHHHHHHHC
Q 004942 689 YLLKNPSVRERMAMEGRKKSN-GLAERHSLGRYCN 722 (722)
Q Consensus 689 ~LL~np~~r~~mg~~grk~ve-~~~~~~~~~~Y~~ 722 (722)
++++|++.+++|+.++++.++ +|+|+..+++|.+
T Consensus 332 ~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 332 RLLADPDLRARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 999999999999999999985 5999999998853
No 31
>PLN02316 synthase/transferase
Probab=99.97 E-value=1.1e-29 Score=301.94 Aligned_cols=352 Identities=13% Similarity=0.103 Sum_probs=247.9
Q ss_pred ccEEEEEeCCC----CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCh---hHH------------------HhCCcE
Q 004942 242 SRKFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM---PEL------------------ARRKIK 296 (722)
Q Consensus 242 ~kkillI~hel----s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~---~el------------------~~~gI~ 296 (722)
+.+|++|+-|. ..||-.-++..|+++|.+.||+|.|+++..+.-.. ..+ ...|++
T Consensus 587 pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~GV~ 666 (1036)
T PLN02316 587 PMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEGLS 666 (1036)
T ss_pred CcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECCcE
Confidence 36899999888 47899999999999999999999999976543110 000 113666
Q ss_pred EEEcCCcc----------------c----------hhh--hcCccEEEECCchhhHhHHHHHHhc----cCCCccEEEEE
Q 004942 297 VLEDRGEP----------------S----------FKT--SMKADLVIAGSAVCATWIDQYITRF----PAGGSQVVWWI 344 (722)
Q Consensus 297 Vl~~~~~~----------------~----------~~~--~~k~DlVia~Sav~~~wi~~~i~~~----~~g~~~ivw~I 344 (722)
++.+.... + +.. ..+|||||+|.-. +.++..++.+. .....+++..+
T Consensus 667 vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~-talva~llk~~~~~~~~~~~p~V~Ti 745 (1036)
T PLN02316 667 VYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWS-SAPVAWLFKDHYAHYGLSKARVVFTI 745 (1036)
T ss_pred EEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCh-HHHHHHHHHHhhhhhccCCCCEEEEe
Confidence 66544321 1 111 3489999888532 22222233221 11224577777
Q ss_pred ecchhHhHHHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhH--
Q 004942 345 MENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKM-- 422 (722)
Q Consensus 345 ~e~r~~yf~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~-- 422 (722)
|-.. ......+..+.+.+.++.+|+..... ++ .... + ......+.+||||||+..|.|...
T Consensus 746 Hnl~-~~~n~lk~~l~~AD~ViTVS~tya~E---I~-----~~~~------l--~~~~~Kl~vI~NGID~~~w~P~tD~~ 808 (1036)
T PLN02316 746 HNLE-FGANHIGKAMAYADKATTVSPTYSRE---VS-----GNSA------I--APHLYKFHGILNGIDPDIWDPYNDNF 808 (1036)
T ss_pred CCcc-cchhHHHHHHHHCCEEEeCCHHHHHH---HH-----hccC------c--ccccCCEEEEECCccccccCCccccc
Confidence 7321 11112334566789999999985332 11 1100 0 011224689999999988876421
Q ss_pred ----------HHHhhhhHHHHHHHhCCCC-CCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccC
Q 004942 423 ----------REKRNLLRDSVRKEMGLTD-QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKS 491 (722)
Q Consensus 423 ----------~ekr~~~r~~~R~elgl~~-~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~ 491 (722)
.+.++..+..+++++|+++ +.++|++|||+.+.||+++|++|+..+.+. .
T Consensus 809 lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~--~----------------- 869 (1036)
T PLN02316 809 IPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLER--N----------------- 869 (1036)
T ss_pred ccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhhc--C-----------------
Confidence 0122234577899999984 578999999999999999999999988642 2
Q ss_pred cccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhH
Q 004942 492 SLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQ 571 (722)
Q Consensus 492 ~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~ 571 (722)
.+|+++|+|++.
T Consensus 870 --------------------------------------------------------------------~qlVIvG~Gpd~ 881 (1036)
T PLN02316 870 --------------------------------------------------------------------GQVVLLGSAPDP 881 (1036)
T ss_pred --------------------------------------------------------------------cEEEEEeCCCCH
Confidence 467889999753
Q ss_pred ---HHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhH--HHHHHHcCEEEEcCCCCCCCccHHHHHHH
Q 004942 572 ---QALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRV--ASLYSAADVYVINSQGLGETFGRVTIEAM 646 (722)
Q Consensus 572 ---~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv--~~lysaADv~V~pS~~l~EgfglviLEAM 646 (722)
+.++.++..+|. .++++|.|++..++. ..+|++||+||+||. .|+||++++|||
T Consensus 882 ~~e~~l~~La~~Lg~-------------------~~~~rV~f~g~~de~lah~iyaaADiflmPS~--~EP~GLvqLEAM 940 (1036)
T PLN02316 882 RIQNDFVNLANQLHS-------------------SHHDRARLCLTYDEPLSHLIYAGADFILVPSI--FEPCGLTQLTAM 940 (1036)
T ss_pred HHHHHHHHHHHHhCc-------------------cCCCeEEEEecCCHHHHHHHHHhCcEEEeCCc--ccCccHHHHHHH
Confidence 344444432210 235789888765443 479999999999997 999999999999
Q ss_pred HhCCCEEEcCCCChhhhhccC-------------ccEEEECCCCccHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHH-hh
Q 004942 647 AFGVPVLGTDAGGTKEIVEHN-------------VTGLLHPPGHPGAQVLAQNLRYLLKN-PSVRERMAMEGRKKSN-GL 711 (722)
Q Consensus 647 A~GlPVVaTd~GG~~EIVe~g-------------~tGlLvp~~d~~~e~LA~aI~~LL~n-p~~r~~mg~~grk~ve-~~ 711 (722)
+||+|+|+++.||++|+|.++ .+|+++++.|+ ++|+.+|.+++.+ ++.+..|+..+++.+. +|
T Consensus 941 a~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~--~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dF 1018 (1036)
T PLN02316 941 RYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADA--AGVDYALNRAISAWYDGRDWFNSLCKRVMEQDW 1018 (1036)
T ss_pred HcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCH--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhC
Confidence 999999999999999999874 69999999998 9999999999987 4666778888888875 49
Q ss_pred cHHHHHHHHH
Q 004942 712 AERHSLGRYC 721 (722)
Q Consensus 712 ~~~~~~~~Y~ 721 (722)
+|+.++.+|.
T Consensus 1019 SW~~~A~~Y~ 1028 (1036)
T PLN02316 1019 SWNRPALDYM 1028 (1036)
T ss_pred CHHHHHHHHH
Confidence 9999999996
No 32
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.97 E-value=3.8e-29 Score=256.52 Aligned_cols=341 Identities=21% Similarity=0.262 Sum_probs=238.2
Q ss_pred EEEEEeCCCC-CCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHh-CCcEEEEcCCcc------chhhhcCccEE
Q 004942 244 KFILIFHELS-MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR-RKIKVLEDRGEP------SFKTSMKADLV 315 (722)
Q Consensus 244 killI~hels-~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~-~gI~Vl~~~~~~------~~~~~~k~DlV 315 (722)
||++|.+... .||.+.++.+|+++|.+.||+|.+++............. .+.......... .+....+||+|
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 80 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRVIVLDNPLDYRRAARAIRLSGPDVV 80 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccceeeeecCCchhHHHHHHHHhhcCCCEE
Confidence 5788888877 899999999999999999999999986654332211111 112222211111 33447899999
Q ss_pred EECCchh--hHhHHHHHHhc-cCCCccEEEEEecc--hh---HhHHHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhc
Q 004942 316 IAGSAVC--ATWIDQYITRF-PAGGSQVVWWIMEN--RR---EYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKL 387 (722)
Q Consensus 316 ia~Sav~--~~wi~~~i~~~-~~g~~~ivw~I~e~--r~---~yf~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l 387 (722)
|++.... ..+....+... .....++++++|.. .. .+....+..+..++.++++|....+. +. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~---~~-----~~ 152 (366)
T cd03822 81 VIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRA---LL-----LR 152 (366)
T ss_pred EEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHH---HH-----hh
Confidence 8865211 11111111111 11234577777764 11 11111233455688899997332121 11 00
Q ss_pred cCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHH
Q 004942 388 RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQL 467 (722)
Q Consensus 388 ~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~ 467 (722)
.. ...+.+|||+++...+.+.... ++.....+.+.|+++|++.+.||++.+++|+..
T Consensus 153 ~~------------~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~ 209 (366)
T cd03822 153 AY------------PEKIAVIPHGVPDPPAEPPESL-----------KALGGLDGRPVLLTFGLLRPYKGLELLLEALPL 209 (366)
T ss_pred cC------------CCcEEEeCCCCcCcccCCchhh-----------HhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHH
Confidence 10 1135899999998877654321 234445677899999999999999999999999
Q ss_pred hHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCC
Q 004942 468 MIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGN 547 (722)
Q Consensus 468 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (722)
+.++.++
T Consensus 210 ~~~~~~~------------------------------------------------------------------------- 216 (366)
T cd03822 210 LVAKHPD------------------------------------------------------------------------- 216 (366)
T ss_pred HHhhCCC-------------------------------------------------------------------------
Confidence 9876554
Q ss_pred CCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCc---hhhHHHHHHHc
Q 004942 548 TDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA---TTRVASLYSAA 624 (722)
Q Consensus 548 ~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~---~~dv~~lysaA 624 (722)
.+++++|+|.......... .| .+.+.+++.++|.|+|. .+++..+|+.|
T Consensus 217 ------------~~l~i~G~~~~~~~~~~~~----------~~------~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~a 268 (366)
T cd03822 217 ------------VRLLVAGETHPDLERYRGE----------AY------ALAERLGLADRVIFINRYLPDEELPELFSAA 268 (366)
T ss_pred ------------eEEEEeccCccchhhhhhh----------hH------hHHHhcCCCCcEEEecCcCCHHHHHHHHhhc
Confidence 4567777775432221110 00 11223388899999986 47899999999
Q ss_pred CEEEEcCCCCCC--CccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHH
Q 004942 625 DVYVINSQGLGE--TFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAM 702 (722)
Q Consensus 625 Dv~V~pS~~l~E--gfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~ 702 (722)
|++++||. .| ++|++++||||||+|||+++.|+ .+.+.++.+|++++++|+ ++++++|..+++|++.+++|++
T Consensus 269 d~~v~ps~--~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i~~~~~g~~~~~~d~--~~~~~~l~~l~~~~~~~~~~~~ 343 (366)
T cd03822 269 DVVVLPYR--SADQTQSGVLAYAIGFGKPVISTPVGH-AEEVLDGGTGLLVPPGDP--AALAEAIRRLLADPELAQALRA 343 (366)
T ss_pred CEEEeccc--ccccccchHHHHHHHcCCCEEecCCCC-hheeeeCCCcEEEcCCCH--HHHHHHHHHHHcChHHHHHHHH
Confidence 99999998 88 99999999999999999999999 777777889999999998 9999999999999999999999
Q ss_pred HHHHHHHhhcHHHHHHHHH
Q 004942 703 EGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 703 ~grk~ve~~~~~~~~~~Y~ 721 (722)
++++.+++|+|+.++++|.
T Consensus 344 ~~~~~~~~~s~~~~~~~~~ 362 (366)
T cd03822 344 RAREYARAMSWERVAERYL 362 (366)
T ss_pred HHHHHHhhCCHHHHHHHHH
Confidence 9999999999999999885
No 33
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.97 E-value=5.1e-29 Score=257.86 Aligned_cols=317 Identities=24% Similarity=0.308 Sum_probs=229.0
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcCccEEEECCchh
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~Sav~ 322 (722)
.||+++++....||++....+++++|.++||+|.+++.... .-.......+||+||++....
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~------------------~~~~~~~~~~~diih~~~~~~ 62 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK------------------ALISKIEIINADIVHLHWIHG 62 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc------------------hhhhChhcccCCEEEEEcccc
Confidence 37999999889999999999999999999999999995543 111234467899998876433
Q ss_pred hHhHHHHHHhccCCCccEEEEEecch----------------------------------hHhHHHHHhhh-ccccEEEE
Q 004942 323 ATWIDQYITRFPAGGSQVVWWIMENR----------------------------------REYFDRAKLVL-DRVKLLVF 367 (722)
Q Consensus 323 ~~wi~~~i~~~~~g~~~ivw~I~e~r----------------------------------~~yf~~~k~~l-~rvk~li~ 367 (722)
..+....+.....+ .++++.+|... ...+......+ .....+++
T Consensus 63 ~~~~~~~~~~~~~~-~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 141 (365)
T cd03825 63 GFLSIEDLSKLLDR-KPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLTIVA 141 (365)
T ss_pred CccCHHHHHHHHcC-CCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccCCcEEEe
Confidence 32222222222122 33666655310 00011111111 11334555
Q ss_pred ecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEE
Q 004942 368 LSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVL 447 (722)
Q Consensus 368 lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl 447 (722)
.|+...+. ..... ++. ...+.++|||+|+..|.+... ...++.+++++++.+++
T Consensus 142 ~s~~~~~~---------~~~~~-----~~~----~~~~~vi~ngi~~~~~~~~~~--------~~~~~~~~~~~~~~~i~ 195 (365)
T cd03825 142 PSRWLADC---------ARSSS-----LFK----GIPIEVIPNGIDTTIFRPRDK--------REARKRLGLPADKKIIL 195 (365)
T ss_pred hhHHHHHH---------HHhcc-----ccC----CCceEEeCCCCcccccCCCcH--------HHHHHHhCCCCCCeEEE
Confidence 55543221 11010 000 113589999999988865443 44677888888888887
Q ss_pred EEecCCC--CCCHHHHHHHHHHhHHh-CCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchh
Q 004942 448 SLSSINP--GKGQLLLVESAQLMIEQ-EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSES 524 (722)
Q Consensus 448 ~vGri~~--~Kg~~~LleA~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~ 524 (722)
+.|+... .||++.+++++..+.++ .++
T Consensus 196 ~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~-------------------------------------------------- 225 (365)
T cd03825 196 FGAVGGTDPRKGFDELIEALKRLAERWKDD-------------------------------------------------- 225 (365)
T ss_pred EEecCCCccccCHHHHHHHHHHhhhccCCC--------------------------------------------------
Confidence 7777655 89999999999988654 122
Q ss_pred hhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCC
Q 004942 525 FTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNL 604 (722)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L 604 (722)
.+++++|+|+..... ++
T Consensus 226 -----------------------------------~~~~i~G~~~~~~~~----------------------------~~ 242 (365)
T cd03825 226 -----------------------------------IELVVFGASDPEIPP----------------------------DL 242 (365)
T ss_pred -----------------------------------eEEEEeCCCchhhhc----------------------------cC
Confidence 467778887654221 23
Q ss_pred CCcEEeCCchh---hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHH
Q 004942 605 SKAMLWTPATT---RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQ 681 (722)
Q Consensus 605 ~~~V~f~G~~~---dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e 681 (722)
..+|.|+|.+. ++..+|+.||++++||. .|+||++++|||+||+|||+++.||..|++.++.+|++++..|+ +
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~--~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~--~ 318 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADVFVVPSL--QENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDP--E 318 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCEEEeccc--cccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCH--H
Confidence 45799999864 68999999999999997 89999999999999999999999999999999889999999888 9
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHh-hcHHHHHHHHH
Q 004942 682 VLAQNLRYLLKNPSVRERMAMEGRKKSNG-LAERHSLGRYC 721 (722)
Q Consensus 682 ~LA~aI~~LL~np~~r~~mg~~grk~ve~-~~~~~~~~~Y~ 721 (722)
+++++|..+++|++.+++|++++++.+++ |+|+.++++|.
T Consensus 319 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 359 (365)
T cd03825 319 DLAEGIEWLLADPDEREELGEAARELAENEFDSRVQAKRYL 359 (365)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999999854 99999998885
No 34
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.97 E-value=2.8e-29 Score=298.13 Aligned_cols=357 Identities=16% Similarity=0.143 Sum_probs=240.3
Q ss_pred CCCcHHHHHHHHHHHHHhCC--CEEEEEEEcCCCC--------ChhHH-------------HhCCcEEEEcCCcc-----
Q 004942 253 SMTGAPLSMMELATELLSCG--ATVSAVVLSKRGG--------LMPEL-------------ARRKIKVLEDRGEP----- 304 (722)
Q Consensus 253 s~gGaplsm~eLA~eL~s~G--~~VsvV~ls~~g~--------l~~el-------------~~~gI~Vl~~~~~~----- 304 (722)
..||--+.+.|||++|.++| |+|.++|-....+ ....+ ...|+.++.+++.+
T Consensus 193 DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l 272 (1050)
T TIGR02468 193 DTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRDKYI 272 (1050)
T ss_pred CCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCCCCc
Confidence 46788889999999999999 8999999433211 00011 12488887766332
Q ss_pred -----------------chhhh--------------cCccEEEECCchhhHhHHHHHHh---ccCCCccEEEEEecchhH
Q 004942 305 -----------------SFKTS--------------MKADLVIAGSAVCATWIDQYITR---FPAGGSQVVWWIMENRRE 350 (722)
Q Consensus 305 -----------------~~~~~--------------~k~DlVia~Sav~~~wi~~~i~~---~~~g~~~ivw~I~e~r~~ 350 (722)
.+..+ ..||+||+|- |..++.+. ...+.| .+...|..-+.
T Consensus 273 ~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHy-----w~sG~aa~~L~~~lgVP-~V~T~HSLgr~ 346 (1050)
T TIGR02468 273 PKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHY-----ADAGDSAALLSGALNVP-MVLTGHSLGRD 346 (1050)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECc-----chHHHHHHHHHHhhCCC-EEEECccchhh
Confidence 11111 1399998884 43333322 222334 45555522110
Q ss_pred ------------------------hHHHHHhhhccccEEEEecHHhHH-HHhhHHHhhhhhccCCCcc-------cccCC
Q 004942 351 ------------------------YFDRAKLVLDRVKLLVFLSESQTK-QWLTWCEEEKLKLRSQPAV-------VPLSV 398 (722)
Q Consensus 351 ------------------------yf~~~k~~l~rvk~li~lS~~~~~-~~~~~~~~~~i~l~~~~~v-------v~l~v 398 (722)
.+..-...+..+..+|..|..... ||..+ ..+.|.+ +.-++
T Consensus 347 K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY-------~~~~~~~~~~~~~~~~~gv 419 (1050)
T TIGR02468 347 KLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLY-------DGFDVILERKLRARARRGV 419 (1050)
T ss_pred hhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHh-------ccCCchhhhhhhhhhcccc
Confidence 111122345668889988877532 22111 0111110 00011
Q ss_pred C---cccceEEeecCCCCCCCCCchhHHHHhhh-------------hHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHH
Q 004942 399 N---DELAFVAGFTCSLNTPTSSPEKMREKRNL-------------LRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLV 462 (722)
Q Consensus 399 ~---~~~~~v~vIpngid~~~f~~~~~~ekr~~-------------~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~Ll 462 (722)
. .....+.|||||+|+..|.|......+.. ....++. +...++.++|+++||+.+.||++.||
T Consensus 420 ~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r-~~~~pdkpvIL~VGRL~p~KGi~~LI 498 (1050)
T TIGR02468 420 SCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMR-FFTNPRKPMILALARPDPKKNITTLV 498 (1050)
T ss_pred cccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHHh-hcccCCCcEEEEEcCCccccCHHHHH
Confidence 1 00115689999999999988532111100 0112333 33456677999999999999999999
Q ss_pred HHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcc
Q 004942 463 ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLF 542 (722)
Q Consensus 463 eA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (722)
+|+..+.+..+..
T Consensus 499 eAf~~L~~l~~~~------------------------------------------------------------------- 511 (1050)
T TIGR02468 499 KAFGECRPLRELA------------------------------------------------------------------- 511 (1050)
T ss_pred HHHHHhHhhccCC-------------------------------------------------------------------
Confidence 9999986432220
Q ss_pred cccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCc--hhhHHHH
Q 004942 543 TSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA--TTRVASL 620 (722)
Q Consensus 543 ~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~--~~dv~~l 620 (722)
... +++|.|+....+..- ...|..++.. +.+.+++.++|.|+|. .++++.+
T Consensus 512 ----------------nL~-LIiG~gdd~d~l~~~---------~~~~l~~L~~-li~~lgL~g~V~FlG~v~~edvp~l 564 (1050)
T TIGR02468 512 ----------------NLT-LIMGNRDDIDEMSSG---------SSSVLTSVLK-LIDKYDLYGQVAYPKHHKQSDVPDI 564 (1050)
T ss_pred ----------------CEE-EEEecCchhhhhhcc---------chHHHHHHHH-HHHHhCCCCeEEecCCCCHHHHHHH
Confidence 012 456776644332211 1233444444 3455599999999996 4789999
Q ss_pred HHHc----CEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHH
Q 004942 621 YSAA----DVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSV 696 (722)
Q Consensus 621 ysaA----Dv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~ 696 (722)
|..| |+||+||. .|+||++++||||||+|||+|+.||+.|+|.++.+|+++++.|+ ++||++|..++.|++.
T Consensus 565 Yr~Ad~s~DVFV~PS~--~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D~--eaLA~AL~~LL~Dpel 640 (1050)
T TIGR02468 565 YRLAAKTKGVFINPAF--IEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQ--QAIADALLKLVADKQL 640 (1050)
T ss_pred HHHhhhcCCeeeCCcc--cCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCCH--HHHHHHHHHHhhCHHH
Confidence 9988 69999997 99999999999999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 697 RERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 697 r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
+++|+.+|++.+++|+|+.++++|.
T Consensus 641 r~~m~~~gr~~v~~FSWe~ia~~yl 665 (1050)
T TIGR02468 641 WAECRQNGLKNIHLFSWPEHCKTYL 665 (1050)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 9999999999999999999999986
No 35
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.97 E-value=1.9e-29 Score=279.22 Aligned_cols=353 Identities=17% Similarity=0.179 Sum_probs=242.1
Q ss_pred cEEEEEeCCC----CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhH-------------------------HHhC
Q 004942 243 RKFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE-------------------------LARR 293 (722)
Q Consensus 243 kkillI~hel----s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~e-------------------------l~~~ 293 (722)
.||++|+.|. ..||...++..|+++|.++||+|.|+++..+...... ....
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 3799999884 5799999999999999999999999996654321110 1124
Q ss_pred CcEEEEcCCcc------------------ch----------hh--hcCccEEEECCchhhHhHHHHHHhccCC-CccEEE
Q 004942 294 KIKVLEDRGEP------------------SF----------KT--SMKADLVIAGSAVCATWIDQYITRFPAG-GSQVVW 342 (722)
Q Consensus 294 gI~Vl~~~~~~------------------~~----------~~--~~k~DlVia~Sav~~~wi~~~i~~~~~g-~~~ivw 342 (722)
|++++.+.... ++ .. ..+||+||+|.-. +..+..++...... ..+++.
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~-~~~~~~~l~~~~~~~~~~~v~ 159 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWH-TALVPALLKAVYRPNPIKTVF 159 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcH-HHHHHHHHHhhccCCCCCEEE
Confidence 56666442211 11 11 3589999888532 12222333332221 134666
Q ss_pred EEecch------hHhH---------------------HHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccc
Q 004942 343 WIMENR------REYF---------------------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVP 395 (722)
Q Consensus 343 ~I~e~r------~~yf---------------------~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~ 395 (722)
.+|... ...+ ...+..+.+.+.++++|+...+.... .....+... +..
T Consensus 160 TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~----~~~~~~l~~-~l~ 234 (473)
T TIGR02095 160 TIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILT----PEFGYGLDG-VLK 234 (473)
T ss_pred EcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcC----CcCCccchh-HHH
Confidence 666321 0000 00122345577788888875332000 000000000 000
Q ss_pred cCCCcccceEEeecCCCCCCCCCchhHH-----------HHhhhhHHHHHHHhCCCC--CCEEEEEEecCCCCCCHHHHH
Q 004942 396 LSVNDELAFVAGFTCSLNTPTSSPEKMR-----------EKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKGQLLLV 462 (722)
Q Consensus 396 l~v~~~~~~v~vIpngid~~~f~~~~~~-----------ekr~~~r~~~R~elgl~~--~~~lIl~vGri~~~Kg~~~Ll 462 (722)
. ....+.+||||+|++.|.|.... +.+...+..+|+++|++. +.++|+++||+.+.||++.++
T Consensus 235 ~----~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li 310 (473)
T TIGR02095 235 A----RSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLL 310 (473)
T ss_pred h----cCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHH
Confidence 0 01235899999999998875321 111223567899999986 678999999999999999999
Q ss_pred HHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcc
Q 004942 463 ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLF 542 (722)
Q Consensus 463 eA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (722)
+|+..+.++ .
T Consensus 311 ~a~~~l~~~--~-------------------------------------------------------------------- 320 (473)
T TIGR02095 311 AALPELLEL--G-------------------------------------------------------------------- 320 (473)
T ss_pred HHHHHHHHc--C--------------------------------------------------------------------
Confidence 999998642 1
Q ss_pred cccCCCCccccCCcccceeEEEcCCch--hHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch--hhHH
Q 004942 543 TSIGNTDAVSFGSGHLRRKVLSKSDGK--QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVA 618 (722)
Q Consensus 543 ~~~~~~~~~~~g~~~~~~~lli~G~G~--~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~--~dv~ 618 (722)
++++++|+|+ ..+.++.++. . ...++.+.+.. +.+.
T Consensus 321 -----------------~~lvi~G~g~~~~~~~l~~~~~---------------------~--~~~~v~~~~~~~~~~~~ 360 (473)
T TIGR02095 321 -----------------GQLVVLGTGDPELEEALRELAE---------------------R--YPGNVRVIIGYDEALAH 360 (473)
T ss_pred -----------------cEEEEECCCCHHHHHHHHHHHH---------------------H--CCCcEEEEEcCCHHHHH
Confidence 4688899985 2334444432 1 23467666543 4578
Q ss_pred HHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccC------ccEEEECCCCccHHHHHHHHHHhhc
Q 004942 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHN------VTGLLHPPGHPGAQVLAQNLRYLLK 692 (722)
Q Consensus 619 ~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g------~tGlLvp~~d~~~e~LA~aI~~LL~ 692 (722)
.+|++||++|+||. .|+||++++|||+||+|||+++.||+.|+|.++ .+|++++++|+ ++|+++|.++++
T Consensus 361 ~~~~~aDv~l~pS~--~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~--~~la~~i~~~l~ 436 (473)
T TIGR02095 361 LIYAGADFILMPSR--FEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDP--GALLAALSRALR 436 (473)
T ss_pred HHHHhCCEEEeCCC--cCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCH--HHHHHHHHHHHH
Confidence 99999999999997 899999999999999999999999999999987 89999999998 999999999988
Q ss_pred ----CHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 693 ----NPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 693 ----np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
|++.+++|+.++.+ ++|+|+.++++|.
T Consensus 437 ~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~ 467 (473)
T TIGR02095 437 LYRQDPSLWEALQKNAMS--QDFSWDKSAKQYV 467 (473)
T ss_pred HHhcCHHHHHHHHHHHhc--cCCCcHHHHHHHH
Confidence 99999999988863 5799999999986
No 36
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.97 E-value=5.9e-29 Score=253.05 Aligned_cols=338 Identities=22% Similarity=0.267 Sum_probs=245.9
Q ss_pred EEEEEeCCCCC--CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhH------HHhCCcEEEEcCCcc-----------
Q 004942 244 KFILIFHELSM--TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE------LARRKIKVLEDRGEP----------- 304 (722)
Q Consensus 244 killI~hels~--gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~e------l~~~gI~Vl~~~~~~----------- 304 (722)
||++|++.... ||++..+..++++|.++||+|.+++.......... -...+++++..+...
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNGLLKRLL 80 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCccchHHHHH
Confidence 58899988755 89999999999999999999999996543332211 123567766543321
Q ss_pred ----------chh--hhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHh----------------H-HHH
Q 004942 305 ----------SFK--TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREY----------------F-DRA 355 (722)
Q Consensus 305 ----------~~~--~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~y----------------f-~~~ 355 (722)
... ...+||+|++++......+.........+ .++++++|...... + ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (394)
T cd03794 81 NYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLKG-APFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLE 159 (394)
T ss_pred hhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcC-CCEEEEehhhcchhHHHccCccccchHHHHHHHHH
Confidence 011 26789999998732222222222222223 34677776421111 1 112
Q ss_pred HhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHH
Q 004942 356 KLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRK 435 (722)
Q Consensus 356 k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~ 435 (722)
+..+.+.+.+++.|+...+. .. ..... ...+.++|||++...+.+..... . +.
T Consensus 160 ~~~~~~~d~vi~~s~~~~~~----~~----~~~~~-----------~~~~~~i~~~~~~~~~~~~~~~~-------~-~~ 212 (394)
T cd03794 160 RLIYRRADAIVVISPGMREY----LV----RRGVP-----------PEKISVIPNGVDLELFKPPPADE-------S-LR 212 (394)
T ss_pred HHHHhcCCEEEEECHHHHHH----HH----hcCCC-----------cCceEEcCCCCCHHHcCCccchh-------h-hh
Confidence 23445678899999886442 10 01111 12358999999987776554311 1 34
Q ss_pred HhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCcc
Q 004942 436 EMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSS 515 (722)
Q Consensus 436 elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~ 515 (722)
+.....+.+.|+++|++.+.||++.+++++..+.+. ++
T Consensus 213 ~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~----------------------------------------- 250 (394)
T cd03794 213 KELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PD----------------------------------------- 250 (394)
T ss_pred hccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CC-----------------------------------------
Confidence 455566788999999999999999999999998655 33
Q ss_pred ccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHH
Q 004942 516 NELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEIL 595 (722)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~ 595 (722)
++++++|+|+..+.++.++...
T Consensus 251 --------------------------------------------~~l~i~G~~~~~~~~~~~~~~~-------------- 272 (394)
T cd03794 251 --------------------------------------------IRFLIVGDGPEKEELKELAKAL-------------- 272 (394)
T ss_pred --------------------------------------------eEEEEeCCcccHHHHHHHHHHc--------------
Confidence 5678889998877776654221
Q ss_pred HHHHhcCCCCCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCc-----cHHHHHHHHhCCCEEEcCCCChhhhhccCc
Q 004942 596 EFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETF-----GRVTIEAMAFGVPVLGTDAGGTKEIVEHNV 668 (722)
Q Consensus 596 ~~l~~~~~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~Egf-----glviLEAMA~GlPVVaTd~GG~~EIVe~g~ 668 (722)
++ .+|.|+|.. +++.++|+.||++++||. .|++ |++++|||+||+|||+++.++..+++.++.
T Consensus 273 -------~~-~~v~~~g~~~~~~~~~~~~~~di~i~~~~--~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~ 342 (394)
T cd03794 273 -------GL-DNVTFLGRVPKEELPELLAAADVGLVPLK--PGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAG 342 (394)
T ss_pred -------CC-CcEEEeCCCChHHHHHHHHhhCeeEEecc--CcccccccCchHHHHHHHCCCcEEEecCCCchhhhccCC
Confidence 33 579999965 689999999999999997 5654 888999999999999999999999999988
Q ss_pred cEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH-hhcHHHHHHHHH
Q 004942 669 TGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSN-GLAERHSLGRYC 721 (722)
Q Consensus 669 tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve-~~~~~~~~~~Y~ 721 (722)
+|++++++|+ ++++++|..++.|++.+++|++++++.+. +|+|+..+++|.
T Consensus 343 ~g~~~~~~~~--~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 394 (394)
T cd03794 343 AGLVVPPGDP--EALAAAILELLDDPEERAEMGENGRRYVEEKFSREKLAERLL 394 (394)
T ss_pred cceEeCCCCH--HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHHHHHHhcC
Confidence 9999999988 99999999999999999999999999997 699999998873
No 37
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.97 E-value=2.1e-28 Score=249.28 Aligned_cols=333 Identities=22% Similarity=0.319 Sum_probs=239.8
Q ss_pred EEEEEeCCC--CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEc--CCc----------c---ch
Q 004942 244 KFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLED--RGE----------P---SF 306 (722)
Q Consensus 244 killI~hel--s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~--~~~----------~---~~ 306 (722)
||+++++.. ..||+...+.++|++|.+.||+|.+++.......... ...++..... ... . ..
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEE-EVVVVRPFRVPTFKYPDFRLPLPIPRALIII 79 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccc-ccccccccccccchhhhhhccccHHHHHHHH
Confidence 577887776 6789999999999999999999999996544322111 1111111110 000 0 22
Q ss_pred hhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHH----------------HHHhhhccccEEEEecH
Q 004942 307 KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFD----------------RAKLVLDRVKLLVFLSE 370 (722)
Q Consensus 307 ~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~----------------~~k~~l~rvk~li~lS~ 370 (722)
....+||+|++++.....++...+... .+. ++++++|..-..+.. ..+..+..++.+++.|+
T Consensus 80 ~~~~~~Div~~~~~~~~~~~~~~~~~~-~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~ 157 (374)
T cd03817 80 LKELGPDIVHTHTPFSLGLLGLRVARK-LGI-PVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSE 157 (374)
T ss_pred HhhcCCCEEEECCchhhhhHHHHHHHH-cCC-CEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccH
Confidence 347899999998653322222222222 222 366666543222211 11223345777888887
Q ss_pred HhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEe
Q 004942 371 SQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLS 450 (722)
Q Consensus 371 ~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vG 450 (722)
...+. +. ..... . .+.++|+|+|...+.+... ...++++++.++++.|+++|
T Consensus 158 ~~~~~----~~----~~~~~---------~---~~~vi~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~G 209 (374)
T cd03817 158 KIADL----LR----EYGVK---------R---PIEVIPTGIDLDRFEPVDG--------DDERRKLGIPEDEPVLLYVG 209 (374)
T ss_pred HHHHH----HH----hcCCC---------C---ceEEcCCccchhccCccch--------hHHHHhcCCCCCCeEEEEEe
Confidence 64222 21 11111 1 2589999999988876543 12266778888889999999
Q ss_pred cCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCC
Q 004942 451 SINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNE 530 (722)
Q Consensus 451 ri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (722)
++.+.||++.+++++..+.++.++
T Consensus 210 ~~~~~k~~~~l~~~~~~~~~~~~~-------------------------------------------------------- 233 (374)
T cd03817 210 RLAKEKNIDFLIRAFARLLKEEPD-------------------------------------------------------- 233 (374)
T ss_pred eeecccCHHHHHHHHHHHHHhCCC--------------------------------------------------------
Confidence 999999999999999998766443
Q ss_pred cccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEe
Q 004942 531 PVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLW 610 (722)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f 610 (722)
++++++|+|+..+.++.++.. +++.++|.|
T Consensus 234 -----------------------------~~l~i~G~~~~~~~~~~~~~~---------------------~~~~~~v~~ 263 (374)
T cd03817 234 -----------------------------VKLVIVGDGPEREELEELARE---------------------LGLADRVIF 263 (374)
T ss_pred -----------------------------eEEEEEeCCchHHHHHHHHHH---------------------cCCCCcEEE
Confidence 568888998877777666532 267789999
Q ss_pred CCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHH
Q 004942 611 TPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLR 688 (722)
Q Consensus 611 ~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~ 688 (722)
+|.+ +++..+|+.||++++||. .|++|++++|||+||+|||+++.|+..|++.++.+|+++++.+. +++++|.
T Consensus 264 ~g~~~~~~~~~~~~~ad~~l~~s~--~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~---~~~~~i~ 338 (374)
T cd03817 264 TGFVPREELPDYYKAADLFVFAST--TETQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLFPPGDE---ALAEALL 338 (374)
T ss_pred eccCChHHHHHHHHHcCEEEeccc--ccCcChHHHHHHHcCCcEEEeCCCChhhheecCceeEEeCCCCH---HHHHHHH
Confidence 9976 789999999999999997 89999999999999999999999999999999999999997773 8999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhhcHHHHHH
Q 004942 689 YLLKNPSVRERMAMEGRKKSNGLAERHSLG 718 (722)
Q Consensus 689 ~LL~np~~r~~mg~~grk~ve~~~~~~~~~ 718 (722)
.+++|++.+++|++++++.++++++...+.
T Consensus 339 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (374)
T cd03817 339 RLLQDPELRRRLSKNAEESAEKFSFAKKVE 368 (374)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998866444333
No 38
>PRK14099 glycogen synthase; Provisional
Probab=99.97 E-value=4.3e-29 Score=279.75 Aligned_cols=355 Identities=17% Similarity=0.206 Sum_probs=244.1
Q ss_pred ccccEEEEEeCCC----CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhH---------H-------------HhC
Q 004942 240 VWSRKFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE---------L-------------ARR 293 (722)
Q Consensus 240 ~~~kkillI~hel----s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~e---------l-------------~~~ 293 (722)
|.+.||++|+-|. ..||-.=++-.|.++|.+.||+|.||.+... .+... + ...
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYP-AVLAGIEDAEQVHSFPDLFGGPARLLAARAG 79 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCc-chhhhhcCceEEEEEeeeCCceEEEEEEEeC
Confidence 5678999999998 6789999999999999999999999997543 22110 0 013
Q ss_pred CcEEEEcCCc--------------------c--ch---h-----------hhcCccEEEECCchhhHhHHHHHHhccCCC
Q 004942 294 KIKVLEDRGE--------------------P--SF---K-----------TSMKADLVIAGSAVCATWIDQYITRFPAGG 337 (722)
Q Consensus 294 gI~Vl~~~~~--------------------~--~~---~-----------~~~k~DlVia~Sav~~~wi~~~i~~~~~g~ 337 (722)
||+++.+..+ . +| . ...+||+||+|.-. +.++..++.......
T Consensus 80 ~v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~-~~l~~~~l~~~~~~~ 158 (485)
T PRK14099 80 GLDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQ-AGLAPAYLHYSGRPA 158 (485)
T ss_pred CceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcH-HHHHHHHHHhCCCCC
Confidence 4555432110 0 11 0 13589999888532 222333332211122
Q ss_pred ccEEEEEecchh----------------HhHH-----------HHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCC
Q 004942 338 SQVVWWIMENRR----------------EYFD-----------RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQ 390 (722)
Q Consensus 338 ~~ivw~I~e~r~----------------~yf~-----------~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~ 390 (722)
.+.+..||.... .++. ..+..+.+++.++.+|+...+. +...+ ...+..
T Consensus 159 ~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~e---i~~~~-~g~gl~ 234 (485)
T PRK14099 159 PGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALE---IQGPE-AGMGLD 234 (485)
T ss_pred CCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHH---Hhccc-CCcChH
Confidence 346667763210 1110 1233455688889999886332 11000 000000
Q ss_pred CcccccCCCcccceEEeecCCCCCCCCCchhHH-----------HHhhhhHHHHHHHhCCCC--CCEEEEEEecCCCCCC
Q 004942 391 PAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMR-----------EKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKG 457 (722)
Q Consensus 391 ~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~-----------ekr~~~r~~~R~elgl~~--~~~lIl~vGri~~~Kg 457 (722)
. +... ....+.+|+||+|+..|.|.... +.+...+..+|+++|++. +.++|+++||+.+.||
T Consensus 235 ~-~l~~----~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG 309 (485)
T PRK14099 235 G-LLRQ----RADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQKG 309 (485)
T ss_pred H-HHHh----hCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCcccc
Confidence 0 0000 01235899999999988775321 122334578899999974 4678999999999999
Q ss_pred HHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCC
Q 004942 458 QLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLL 537 (722)
Q Consensus 458 ~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (722)
++.|++|+..+.++ +
T Consensus 310 ~d~Li~A~~~l~~~--~--------------------------------------------------------------- 324 (485)
T PRK14099 310 LDLLLEALPTLLGE--G--------------------------------------------------------------- 324 (485)
T ss_pred HHHHHHHHHHHHhc--C---------------------------------------------------------------
Confidence 99999999988642 1
Q ss_pred CCCcccccCCCCccccCCcccceeEEEcCCchh--HHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcE-EeCCch
Q 004942 538 SPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQ--QQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAM-LWTPAT 614 (722)
Q Consensus 538 ~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~--~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V-~f~G~~ 614 (722)
.+|+++|+|+. ++.++.++. . +++++ .|+|+.
T Consensus 325 ----------------------~~lvivG~G~~~~~~~l~~l~~---------------------~--~~~~v~~~~G~~ 359 (485)
T PRK14099 325 ----------------------AQLALLGSGDAELEARFRAAAQ---------------------A--YPGQIGVVIGYD 359 (485)
T ss_pred ----------------------cEEEEEecCCHHHHHHHHHHHH---------------------H--CCCCEEEEeCCC
Confidence 35788898863 444544442 1 12344 799998
Q ss_pred hhHHHHHH-HcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccC---------ccEEEECCCCccHHHHH
Q 004942 615 TRVASLYS-AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHN---------VTGLLHPPGHPGAQVLA 684 (722)
Q Consensus 615 ~dv~~lys-aADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g---------~tGlLvp~~d~~~e~LA 684 (722)
++++.+|. +||+||+||. .|+||++++|||+||+|+|++++||++|+|.++ .+|++++++|+ ++|+
T Consensus 360 ~~l~~~~~a~aDifv~PS~--~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~--~~La 435 (485)
T PRK14099 360 EALAHLIQAGADALLVPSR--FEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTA--DALA 435 (485)
T ss_pred HHHHHHHHhcCCEEEECCc--cCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCH--HHHH
Confidence 89999875 6999999997 899999999999999988889999999999775 68999999998 9999
Q ss_pred HHHHH---hhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 685 QNLRY---LLKNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 685 ~aI~~---LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
++|.+ +++|++.+++|+.+++. ++|+|+.++++|.
T Consensus 436 ~ai~~a~~l~~d~~~~~~l~~~~~~--~~fSw~~~a~~y~ 473 (485)
T PRK14099 436 AALRKTAALFADPVAWRRLQRNGMT--TDVSWRNPAQHYA 473 (485)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhhh--hcCChHHHHHHHH
Confidence 99997 77899999999999863 6799999999985
No 39
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.97 E-value=3.7e-29 Score=257.08 Aligned_cols=310 Identities=19% Similarity=0.152 Sum_probs=218.8
Q ss_pred cEEEEEeCCC------CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEc--CCc-----------
Q 004942 243 RKFILIFHEL------SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLED--RGE----------- 303 (722)
Q Consensus 243 kkillI~hel------s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~--~~~----------- 303 (722)
+||++|++.+ ..||++..+.+|+.+|.+.||+|.+++........ .+.......... ...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAA-PLVPVVPEPLRLDAPGRDRAEAEALALA 79 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCccc-ceeeccCCCcccccchhhHhhHHHHHHH
Confidence 4899999987 89999999999999999999999999965442211 111110000000 000
Q ss_pred cchhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHHHHHhhhccccEEEEecHHhHHHHhhHHHhh
Q 004942 304 PSFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEE 383 (722)
Q Consensus 304 ~~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~ 383 (722)
.++....+||+||+++.....+ .....+ .++++++|.....+.............++++|+..... +
T Consensus 80 ~~~~~~~~~Divh~~~~~~~~~-----~~~~~~-~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~----~--- 146 (335)
T cd03802 80 ERALAAGDFDIVHNHSLHLPLP-----FARPLP-VPVVTTLHGPPDPELLKLYYAARPDVPFVSISDAQRRP----W--- 146 (335)
T ss_pred HHHHhcCCCCEEEecCcccchh-----hhcccC-CCEEEEecCCCCcccchHHHhhCcCCeEEEecHHHHhh----c---
Confidence 0333478999999887554433 122222 34777776544333322222334466678888875321 1
Q ss_pred hhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHH
Q 004942 384 KLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVE 463 (722)
Q Consensus 384 ~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~Lle 463 (722)
.. . ..+.+||||+|++.|.+.. .++..|+++|++.+.||++.+++
T Consensus 147 ------~~----~------~~~~vi~ngvd~~~~~~~~-------------------~~~~~i~~~Gr~~~~Kg~~~li~ 191 (335)
T cd03802 147 ------PP----L------PWVATVHNGIDLDDYPFRG-------------------PKGDYLLFLGRISPEKGPHLAIR 191 (335)
T ss_pred ------cc----c------cccEEecCCcChhhCCCCC-------------------CCCCEEEEEEeeccccCHHHHHH
Confidence 01 0 2347999999999886522 23457999999999999999999
Q ss_pred HHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCccc
Q 004942 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (722)
Q Consensus 464 A~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (722)
+++.. +
T Consensus 192 ~~~~~-----~--------------------------------------------------------------------- 197 (335)
T cd03802 192 AARRA-----G--------------------------------------------------------------------- 197 (335)
T ss_pred HHHhc-----C---------------------------------------------------------------------
Confidence 87532 1
Q ss_pred ccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch--hhHHHHH
Q 004942 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLY 621 (722)
Q Consensus 544 ~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~--~dv~~ly 621 (722)
.+++++|.|+....+...+... ..+.++|.|+|.+ +++.++|
T Consensus 198 ----------------~~l~i~G~~~~~~~~~~~~~~~--------------------~~~~~~v~~~G~~~~~~~~~~~ 241 (335)
T cd03802 198 ----------------IPLKLAGPVSDPDYFYREIAPE--------------------LLDGPDIEYLGEVGGAEKAELL 241 (335)
T ss_pred ----------------CeEEEEeCCCCHHHHHHHHHHh--------------------cccCCcEEEeCCCCHHHHHHHH
Confidence 3577888887665555444211 0145789999986 4688999
Q ss_pred HHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHH
Q 004942 622 SAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMA 701 (722)
Q Consensus 622 saADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg 701 (722)
+.+|++|+||.+ .|+||++++||||||+|||+++.||.+|++.++.+|+++++ + ++++++|..+++++.
T Consensus 242 ~~~d~~v~ps~~-~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~l~~~--~--~~l~~~l~~l~~~~~------ 310 (335)
T cd03802 242 GNARALLFPILW-EEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGFLVDS--V--EELAAAVARADRLDR------ 310 (335)
T ss_pred HhCcEEEeCCcc-cCCcchHHHHHHhcCCCEEEeCCCCchhheeCCCcEEEeCC--H--HHHHHHHHHHhccHH------
Confidence 999999999972 69999999999999999999999999999999999999986 5 899999999976542
Q ss_pred HHHHHHH-HhhcHHHHHHHHHC
Q 004942 702 MEGRKKS-NGLAERHSLGRYCN 722 (722)
Q Consensus 702 ~~grk~v-e~~~~~~~~~~Y~~ 722 (722)
+++++.+ ++|+|+.++++|.+
T Consensus 311 ~~~~~~~~~~~s~~~~~~~~~~ 332 (335)
T cd03802 311 AACRRRAERRFSAARMVDDYLA 332 (335)
T ss_pred HHHHHHHHHhCCHHHHHHHHHH
Confidence 3455555 55999999999863
No 40
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.97 E-value=2.4e-28 Score=244.80 Aligned_cols=337 Identities=25% Similarity=0.348 Sum_probs=245.7
Q ss_pred EEEEEeCCCC--CCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEc----CC----cc--------c
Q 004942 244 KFILIFHELS--MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLED----RG----EP--------S 305 (722)
Q Consensus 244 killI~hels--~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~----~~----~~--------~ 305 (722)
||+++++... .||+...+..|+++|.+.||+|.+++............ ........ .. .. .
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV-GGIVVVRPPPLLRVRRLLLLLLLALRLRR 79 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee-cCcceecCCcccccchhHHHHHHHHHHHH
Confidence 5778887763 38999999999999999999999999655433221111 11111100 00 00 3
Q ss_pred hhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHh------------HHHHHhhhccccEEEEecHHhH
Q 004942 306 FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREY------------FDRAKLVLDRVKLLVFLSESQT 373 (722)
Q Consensus 306 ~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~y------------f~~~k~~l~rvk~li~lS~~~~ 373 (722)
+....+||+|+++......+.. .... .. ..++++++|...... .......+...+.+++.|+...
T Consensus 80 ~~~~~~~Dii~~~~~~~~~~~~-~~~~-~~-~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~ 156 (374)
T cd03801 80 LLRRERFDVVHAHDWLALLAAA-LAAR-LL-GIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATR 156 (374)
T ss_pred HhhhcCCcEEEEechhHHHHHH-HHHH-hc-CCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHH
Confidence 3347799999888655433322 1222 22 234666666432211 1222344556888999998864
Q ss_pred HHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCC
Q 004942 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (722)
Q Consensus 374 ~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~ 453 (722)
+. . .-.... . ...+.++|+|++...+.+... ..+.......+.+.|+++|++.
T Consensus 157 ~~----~-----~~~~~~-------~--~~~~~~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~i~~~g~~~ 209 (374)
T cd03801 157 EE----L-----RELGGV-------P--PEKITVIPNGVDTERFRPAPR---------AARRRLGIPEDEPVILFVGRLV 209 (374)
T ss_pred HH----H-----HhcCCC-------C--CCcEEEecCcccccccCccch---------HHHhhcCCcCCCeEEEEecchh
Confidence 32 1 111111 0 123589999999988865431 1234455566788999999999
Q ss_pred CCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCccc
Q 004942 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (722)
Q Consensus 454 ~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (722)
+.||++.+++++..+.++.++
T Consensus 210 ~~k~~~~~i~~~~~~~~~~~~----------------------------------------------------------- 230 (374)
T cd03801 210 PRKGVDLLLEALAKLRKEYPD----------------------------------------------------------- 230 (374)
T ss_pred hhcCHHHHHHHHHHHhhhcCC-----------------------------------------------------------
Confidence 999999999999999765443
Q ss_pred ccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCc
Q 004942 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (722)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~ 613 (722)
++++++|.|+..+.++.++.. +++.++|.|+|.
T Consensus 231 --------------------------~~l~i~G~~~~~~~~~~~~~~---------------------~~~~~~v~~~g~ 263 (374)
T cd03801 231 --------------------------VRLVIVGDGPLREELEALAAE---------------------LGLGDRVTFLGF 263 (374)
T ss_pred --------------------------eEEEEEeCcHHHHHHHHHHHH---------------------hCCCcceEEEec
Confidence 567888888877777766532 267789999998
Q ss_pred h--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhh
Q 004942 614 T--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL 691 (722)
Q Consensus 614 ~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL 691 (722)
. +++.++|..||++++|+. .|++|++++|||++|+|||+++.++..|++.++.+|+++++.|+ ++++++|.+++
T Consensus 264 ~~~~~~~~~~~~~di~i~~~~--~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~--~~l~~~i~~~~ 339 (374)
T cd03801 264 VPDEDLPALYAAADVFVLPSL--YEGFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDP--EALAEAILRLL 339 (374)
T ss_pred cChhhHHHHHHhcCEEEecch--hccccchHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCCH--HHHHHHHHHHH
Confidence 8 899999999999999997 79999999999999999999999999999999999999999988 99999999999
Q ss_pred cCHHHHHHHHHHHHHHH-HhhcHHHHHHHHH
Q 004942 692 KNPSVRERMAMEGRKKS-NGLAERHSLGRYC 721 (722)
Q Consensus 692 ~np~~r~~mg~~grk~v-e~~~~~~~~~~Y~ 721 (722)
+|++.+++|+.++++.+ +.|+|+...++|.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (374)
T cd03801 340 DDPELRRRLGEAARERVAERFSWDRVAARTE 370 (374)
T ss_pred cChHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999665 5599999998875
No 41
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.97 E-value=7.6e-29 Score=255.62 Aligned_cols=330 Identities=23% Similarity=0.286 Sum_probs=237.9
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCh--hHHHhCCcEEEEcCCcc-------ch---hhhcC
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM--PELARRKIKVLEDRGEP-------SF---KTSMK 311 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~--~el~~~gI~Vl~~~~~~-------~~---~~~~k 311 (722)
||+++++.+..+ ++..+.+++..|.++||+|.+++........ ......+..+....... .+ ....+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578888877544 8889999999999999999999976543211 11111111111100000 11 12579
Q ss_pred ccEEEECCchhhHhHHHHHHhccCCCccEEEEEecch--hHhH-HHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhcc
Q 004942 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR--REYF-DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLR 388 (722)
Q Consensus 312 ~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r--~~yf-~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~ 388 (722)
+|+||+++.....++..+.. ...+. ++++.+|... .... ...+..+...+.+++.|+...+. ... ..+
T Consensus 80 ~Dii~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~----l~~---~~~ 150 (355)
T cd03799 80 IDHIHAHFGTTPATVAMLAS-RLGGI-PYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQ----LIR---LLG 150 (355)
T ss_pred CCEEEECCCCchHHHHHHHH-HhcCC-CEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHH----HHH---hcC
Confidence 99999987654333332222 22233 3444444211 1111 12334556688899999886442 211 011
Q ss_pred CCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHh
Q 004942 389 SQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLM 468 (722)
Q Consensus 389 ~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L 468 (722)
.. ...+.+||||+|.+.+.+... ....+++.|+++|++.+.||++.+++++..+
T Consensus 151 ~~-----------~~~~~vi~~~~d~~~~~~~~~---------------~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l 204 (355)
T cd03799 151 CD-----------PDKIHVVHCGVDLERFPPRPP---------------PPPGEPLRILSVGRLVEKKGLDYLLEALALL 204 (355)
T ss_pred CC-----------cccEEEEeCCcCHHHcCCccc---------------cccCCCeEEEEEeeeccccCHHHHHHHHHHH
Confidence 11 123589999999887765430 1234567899999999999999999999998
Q ss_pred HHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCC
Q 004942 469 IEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNT 548 (722)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (722)
.++.++
T Consensus 205 ~~~~~~-------------------------------------------------------------------------- 210 (355)
T cd03799 205 KDRGID-------------------------------------------------------------------------- 210 (355)
T ss_pred hhcCCC--------------------------------------------------------------------------
Confidence 765333
Q ss_pred CccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch--hhHHHHHHHcCE
Q 004942 549 DAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADV 626 (722)
Q Consensus 549 ~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~--~dv~~lysaADv 626 (722)
+++.++|.|+..+.++..+... ++.++|.|+|.. +++..+|+.||+
T Consensus 211 -----------~~l~i~G~~~~~~~~~~~~~~~---------------------~~~~~v~~~g~~~~~~l~~~~~~adi 258 (355)
T cd03799 211 -----------FRLDIVGDGPLRDELEALIAEL---------------------GLEDRVTLLGAKSQEEVRELLRAADL 258 (355)
T ss_pred -----------eEEEEEECCccHHHHHHHHHHc---------------------CCCCeEEECCcCChHHHHHHHHhCCE
Confidence 5678889998887777766433 677899999987 789999999999
Q ss_pred EEEcCCCCC------CCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHH
Q 004942 627 YVINSQGLG------ETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERM 700 (722)
Q Consensus 627 ~V~pS~~l~------EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~m 700 (722)
+++||. . |+||++++||||||+|||+++.|+.+|+++++.+|++++++|+ ++++++|..+++|++.+.+|
T Consensus 259 ~l~~s~--~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~~--~~l~~~i~~~~~~~~~~~~~ 334 (355)
T cd03799 259 FVLPSV--TAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDGETGLLVPPGDP--EALADAIERLLDDPELRREM 334 (355)
T ss_pred EEecce--ecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhCCCceEEeCCCCH--HHHHHHHHHHHhCHHHHHHH
Confidence 999997 5 9999999999999999999999999999999989999999888 99999999999999999999
Q ss_pred HHHHHHHHHh-hcHHHHHHH
Q 004942 701 AMEGRKKSNG-LAERHSLGR 719 (722)
Q Consensus 701 g~~grk~ve~-~~~~~~~~~ 719 (722)
++++++.+++ |+|+..+++
T Consensus 335 ~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 335 GEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred HHHHHHHHHHhcCHHHHhhc
Confidence 9999999865 898887764
No 42
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.97 E-value=3.9e-29 Score=274.97 Aligned_cols=353 Identities=15% Similarity=0.159 Sum_probs=242.5
Q ss_pred EEEEEeCCC----CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhH-------------------------HHhCC
Q 004942 244 KFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE-------------------------LARRK 294 (722)
Q Consensus 244 killI~hel----s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~e-------------------------l~~~g 294 (722)
||++|+.|. ..||..-++..|+++|.+.||+|.|+++..+...... ....|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 588999886 5799999999999999999999999996654321110 01247
Q ss_pred cEEEEcCCcc------------------------------chhh--hcCccEEEECCchhhHhHHHHHHhcc----CCCc
Q 004942 295 IKVLEDRGEP------------------------------SFKT--SMKADLVIAGSAVCATWIDQYITRFP----AGGS 338 (722)
Q Consensus 295 I~Vl~~~~~~------------------------------~~~~--~~k~DlVia~Sav~~~wi~~~i~~~~----~g~~ 338 (722)
++++.++.+. .+.. ..+||+||+|...+ ..+..++.+.. ....
T Consensus 81 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t-~~~~~~l~~~~~~~~~~~~ 159 (476)
T cd03791 81 VPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHT-GLVPALLKEKYADPFFKNI 159 (476)
T ss_pred ceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHH-HHHHHHHHHhhccccCCCC
Confidence 7777554322 0111 37999999886442 23333333322 1234
Q ss_pred cEEEEEecchhH-----h-H----------------------HHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCC
Q 004942 339 QVVWWIMENRRE-----Y-F----------------------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQ 390 (722)
Q Consensus 339 ~ivw~I~e~r~~-----y-f----------------------~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~ 390 (722)
++++.+|..... + + ...+..+...+.++.+|....+. ........+..
T Consensus 160 ~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~----i~~~~~~~gl~ 235 (476)
T cd03791 160 KTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYARE----ILTPEFGEGLD 235 (476)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHH----hCCCCCCcchH
Confidence 588888753110 0 0 11122344567788888775332 10000000000
Q ss_pred CcccccCCCcccceEEeecCCCCCCCCCchhHHH-----------HhhhhHHHHHHHhCCC--CCCEEEEEEecCCCCCC
Q 004942 391 PAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMRE-----------KRNLLRDSVRKEMGLT--DQDMLVLSLSSINPGKG 457 (722)
Q Consensus 391 ~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~e-----------kr~~~r~~~R~elgl~--~~~~lIl~vGri~~~Kg 457 (722)
. +.+ .....+.+||||+|++.|.|..... .+...+..+++++|++ ++.++|+++||+.+.||
T Consensus 236 ~-~~~----~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg 310 (476)
T cd03791 236 G-LLR----ARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKG 310 (476)
T ss_pred H-HHH----hccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeecccccc
Confidence 0 000 0012468999999999998754211 1223457789999995 67889999999999999
Q ss_pred HHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCC
Q 004942 458 QLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLL 537 (722)
Q Consensus 458 ~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (722)
++.+++++..+.++.
T Consensus 311 ~~~li~a~~~l~~~~----------------------------------------------------------------- 325 (476)
T cd03791 311 IDLLLEALPELLELG----------------------------------------------------------------- 325 (476)
T ss_pred HHHHHHHHHHHHHcC-----------------------------------------------------------------
Confidence 999999999986431
Q ss_pred CCCcccccCCCCccccCCcccceeEEEcCCchhH--HHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEe-CCch
Q 004942 538 SPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQ--QALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLW-TPAT 614 (722)
Q Consensus 538 ~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~--~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f-~G~~ 614 (722)
.+++++|+|+.. +.++.++ +. +.++|.+ .|..
T Consensus 326 ----------------------~~lvi~G~g~~~~~~~~~~~~---------------------~~--~~~~v~~~~~~~ 360 (476)
T cd03791 326 ----------------------GQLVILGSGDPEYEEALRELA---------------------AR--YPGRVAVLIGYD 360 (476)
T ss_pred ----------------------cEEEEEecCCHHHHHHHHHHH---------------------Hh--CCCcEEEEEeCC
Confidence 357888888532 2333322 22 1456665 4544
Q ss_pred -hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCc------cEEEECCCCccHHHHHHHH
Q 004942 615 -TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNV------TGLLHPPGHPGAQVLAQNL 687 (722)
Q Consensus 615 -~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~------tGlLvp~~d~~~e~LA~aI 687 (722)
+.+..+|++||++++||. .|+||++++|||+||+|||+++.||+.|+|.++. +|++++++|+ ++|+++|
T Consensus 361 ~~~~~~~~~~aDv~l~pS~--~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~--~~l~~~i 436 (476)
T cd03791 361 EALAHLIYAGADFFLMPSR--FEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNA--DALLAAL 436 (476)
T ss_pred HHHHHHHHHhCCEEECCCC--CCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCH--HHHHHHH
Confidence 456789999999999997 8999999999999999999999999999999987 9999999998 9999999
Q ss_pred HHhhc---CHHHHHHHHHHHHHHHHhhcHHHHHHHHHC
Q 004942 688 RYLLK---NPSVRERMAMEGRKKSNGLAERHSLGRYCN 722 (722)
Q Consensus 688 ~~LL~---np~~r~~mg~~grk~ve~~~~~~~~~~Y~~ 722 (722)
.++++ +++.+++|++++.+ ..|+|+.++++|.+
T Consensus 437 ~~~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~~ 472 (476)
T cd03791 437 RRALALYRDPEAWRKLQRNAMA--QDFSWDRSAKEYLE 472 (476)
T ss_pred HHHHHHHcCHHHHHHHHHHHhc--cCCChHHHHHHHHH
Confidence 99875 78888888887765 46999999999863
No 43
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.97 E-value=1.6e-28 Score=268.34 Aligned_cols=345 Identities=16% Similarity=0.136 Sum_probs=232.5
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--c---------------
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--S--------------- 305 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~--------------- 305 (722)
+|+++++- .+.|+..-+.++|++|.+.||+|++++....+.........||+++...... .
T Consensus 4 ~~~~~~~~--~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T cd03816 4 KRVCVLVL--GDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPPQRLNKLPFLLFAPLKVLW 81 (415)
T ss_pred cEEEEEEe--cccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCccccccchHHHHHHHHHHH
Confidence 55655554 4566767778999999999999999997654443333567899998876542 0
Q ss_pred --------hhhhcCccEEEECCchh-hHhHHHHHHhccCCCccEEEEEecch----------hH----hHHHH-Hhhhcc
Q 004942 306 --------FKTSMKADLVIAGSAVC-ATWIDQYITRFPAGGSQVVWWIMENR----------RE----YFDRA-KLVLDR 361 (722)
Q Consensus 306 --------~~~~~k~DlVia~Sav~-~~wi~~~i~~~~~g~~~ivw~I~e~r----------~~----yf~~~-k~~l~r 361 (722)
+....+||+||+++... ..++..+++....+.+ ++..+|... .. ++... +....+
T Consensus 82 ~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~-~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 160 (415)
T cd03816 82 QFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTK-LIIDWHNYGYTILALKLGENHPLVRLAKWYEKLFGRL 160 (415)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCe-EEEEcCCchHHHHhcccCCCCHHHHHHHHHHHHHhhc
Confidence 12345899999875321 1222233323333344 433333211 00 11111 122345
Q ss_pred ccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHH------
Q 004942 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRK------ 435 (722)
Q Consensus 362 vk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~------ 435 (722)
.+.++++|+...+. . .+.+..+ ..+.+|||| +...|.|....+.+ ...++
T Consensus 161 ad~ii~vS~~~~~~----l----~~~~~~~-----------~ki~vI~Ng-~~~~f~p~~~~~~~----~~~~~~~~~~~ 216 (415)
T cd03816 161 ADYNLCVTKAMKED----L----QQFNNWK-----------IRATVLYDR-PPEQFRPLPLEEKH----ELFLKLAKTFL 216 (415)
T ss_pred CCEeeecCHHHHHH----H----HhhhccC-----------CCeeecCCC-CHHHceeCcHHHHH----HHHHhcccccc
Confidence 88999999986432 1 1112211 235899999 44556554332211 11111
Q ss_pred -------HhCC-CCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccc
Q 004942 436 -------EMGL-TDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQM 507 (722)
Q Consensus 436 -------elgl-~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~ 507 (722)
..++ +++..+++++|++.+.||++.|++|+..+.++....
T Consensus 217 ~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~-------------------------------- 264 (415)
T cd03816 217 TRELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATG-------------------------------- 264 (415)
T ss_pred ccccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhccc--------------------------------
Confidence 1122 244568889999999999999999999997642210
Q ss_pred cccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCC
Q 004942 508 SDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNK 587 (722)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~ 587 (722)
..+..++|+++|+|++++.++.++...
T Consensus 265 -----------------------------------------------~~~~~i~l~ivG~G~~~~~l~~~~~~~------ 291 (415)
T cd03816 265 -----------------------------------------------PKLPKLLCIITGKGPLKEKYLERIKEL------ 291 (415)
T ss_pred -----------------------------------------------ccCCCEEEEEEecCccHHHHHHHHHHc------
Confidence 001226789999999998888877533
Q ss_pred chhHHHHHHHHHhcCCCCCcEEeCCc--hhhHHHHHHHcCEEEEcCCC-CCCCccHHHHHHHHhCCCEEEcCCCChhhhh
Q 004942 588 VPYVKEILEFLSQHSNLSKAMLWTPA--TTRVASLYSAADVYVINSQG-LGETFGRVTIEAMAFGVPVLGTDAGGTKEIV 664 (722)
Q Consensus 588 ~~Y~~el~~~l~~~~~L~~~V~f~G~--~~dv~~lysaADv~V~pS~~-l~EgfglviLEAMA~GlPVVaTd~GG~~EIV 664 (722)
++++.+.+.|. .++++.+|++||++|.++.. .+|++|++++||||||+|||+|+.||..|+|
T Consensus 292 ---------------~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv 356 (415)
T cd03816 292 ---------------KLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELV 356 (415)
T ss_pred ---------------CCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHh
Confidence 67656666675 48999999999999975321 2588999999999999999999999999999
Q ss_pred ccCccEEEECCCCccHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHhhcHHHHHHH
Q 004942 665 EHNVTGLLHPPGHPGAQVLAQNLRYLLKN---PSVRERMAMEGRKKSNGLAERHSLGR 719 (722)
Q Consensus 665 e~g~tGlLvp~~d~~~e~LA~aI~~LL~n---p~~r~~mg~~grk~ve~~~~~~~~~~ 719 (722)
+++.+|++++ |+ ++||++|..+++| |+.+++|++++++.+ ++.|.+.+.+
T Consensus 357 ~~~~~G~lv~--d~--~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~-~~~~~~~~~~ 409 (415)
T cd03816 357 KHGENGLVFG--DS--EELAEQLIDLLSNFPNRGKLNSLKKGAQEES-ELRWDENWDR 409 (415)
T ss_pred cCCCCEEEEC--CH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh-hcCHHHHHHH
Confidence 9999999994 65 9999999999999 999999999999988 4455554443
No 44
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=2e-28 Score=253.83 Aligned_cols=328 Identities=19% Similarity=0.199 Sum_probs=228.8
Q ss_pred EEEEEeCC-C--CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc------------chhh
Q 004942 244 KFILIFHE-L--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP------------SFKT 308 (722)
Q Consensus 244 killI~he-l--s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~------------~~~~ 308 (722)
||++|..+ . ..||++.++.+||.+|.+.||+|.+++..... ........|++++..+... .+..
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYP-KQKETEYNGVRLIHIPAPEIGGLGTIIYDILAILH 79 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCC-CCcccccCCceEEEcCCCCccchhhhHHHHHHHHH
Confidence 45666333 2 67999999999999999999999999954332 2223456789988766442 1111
Q ss_pred h--cCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecch----------hHhHHH-HHhhhccccEEEEecHHhHHH
Q 004942 309 S--MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR----------REYFDR-AKLVLDRVKLLVFLSESQTKQ 375 (722)
Q Consensus 309 ~--~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r----------~~yf~~-~k~~l~rvk~li~lS~~~~~~ 375 (722)
. .++|++++++.....+....+.... ..++++++|... ..++.. ........+.++++|+...+.
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 157 (363)
T cd04955 80 ALFVKRDIDHVHALGPAIAPFLPLLRLK--GKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRLIADSPGIKEY 157 (363)
T ss_pred HHhccCCeEEEEecCccHHHHHHHHHhc--CCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEEEeCCHHHHHH
Confidence 1 2455554443221111111122222 334666665321 111111 112334577889999886443
Q ss_pred HhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCC
Q 004942 376 WLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPG 455 (722)
Q Consensus 376 ~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~ 455 (722)
+...+.. .. .+||||+|.+.+.+. ...+++++++++. .++++|++.+.
T Consensus 158 ---------~~~~~~~--------~~----~~i~ngv~~~~~~~~----------~~~~~~~~~~~~~-~i~~~G~~~~~ 205 (363)
T cd04955 158 ---------LKEKYGR--------DS----TYIPYGADHVVSSEE----------DEILKKYGLEPGR-YYLLVGRIVPE 205 (363)
T ss_pred ---------HHHhcCC--------CC----eeeCCCcChhhcchh----------hhhHHhcCCCCCc-EEEEEeccccc
Confidence 1111111 11 689999998877541 1234556666554 57899999999
Q ss_pred CCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCccccc
Q 004942 456 KGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKN 535 (722)
Q Consensus 456 Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (722)
||++.+++|++.+.. +
T Consensus 206 Kg~~~li~a~~~l~~---~------------------------------------------------------------- 221 (363)
T cd04955 206 NNIDDLIEAFSKSNS---G------------------------------------------------------------- 221 (363)
T ss_pred CCHHHHHHHHHhhcc---C-------------------------------------------------------------
Confidence 999999999987732 1
Q ss_pred CCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch-
Q 004942 536 LLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT- 614 (722)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~- 614 (722)
++++++|+|+....+...+. +.+++.++|.|+|.+
T Consensus 222 ------------------------~~l~ivG~~~~~~~~~~~~~--------------------~~~~~~~~V~~~g~~~ 257 (363)
T cd04955 222 ------------------------KKLVIVGNADHNTPYGKLLK--------------------EKAAADPRIIFVGPIY 257 (363)
T ss_pred ------------------------ceEEEEcCCCCcchHHHHHH--------------------HHhCCCCcEEEccccC
Confidence 45788888865554444332 123677899999976
Q ss_pred -hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcC
Q 004942 615 -TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKN 693 (722)
Q Consensus 615 -~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~n 693 (722)
+++..+|.+||++++||.. .|+||++++||||||+|||+|+.|+..|++++ +|++++++++ ++++|..+++|
T Consensus 258 ~~~~~~~~~~ad~~v~ps~~-~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~--~g~~~~~~~~----l~~~i~~l~~~ 330 (363)
T cd04955 258 DQELLELLRYAALFYLHGHS-VGGTNPSLLEAMAYGCPVLASDNPFNREVLGD--KAIYFKVGDD----LASLLEELEAD 330 (363)
T ss_pred hHHHHHHHHhCCEEEeCCcc-CCCCChHHHHHHHcCCCEEEecCCccceeecC--CeeEecCchH----HHHHHHHHHhC
Confidence 6789999999999999972 49999999999999999999999999999986 7889887663 99999999999
Q ss_pred HHHHHHHHHHHHHHHHh-hcHHHHHHHHH
Q 004942 694 PSVRERMAMEGRKKSNG-LAERHSLGRYC 721 (722)
Q Consensus 694 p~~r~~mg~~grk~ve~-~~~~~~~~~Y~ 721 (722)
++.+.+|++++++.+++ |+|+.++++|.
T Consensus 331 ~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 359 (363)
T cd04955 331 PEEVSAMAKAARERIREKYTWEKIADQYE 359 (363)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999875 99999999986
No 45
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.97 E-value=4.2e-28 Score=282.95 Aligned_cols=379 Identities=15% Similarity=0.179 Sum_probs=240.4
Q ss_pred hhhhccccEEEEEeCCCC-----------CCcHHHHHHHHHHH--------HHhCCC----EEEEEEEcCCCCCh----h
Q 004942 236 FARFVWSRKFILIFHELS-----------MTGAPLSMMELATE--------LLSCGA----TVSAVVLSKRGGLM----P 288 (722)
Q Consensus 236 f~~~~~~kkillI~hels-----------~gGaplsm~eLA~e--------L~s~G~----~VsvV~ls~~g~l~----~ 288 (722)
+.|.=|..+|++|+...+ .||-.+.+.+||++ |.++|+ +|.|+|-..+.... +
T Consensus 249 ~~~~p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~ 328 (784)
T TIGR02470 249 LGRIPMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQ 328 (784)
T ss_pred HhhCCccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccc
Confidence 446667789999887763 57778889999997 468999 67788833221111 1
Q ss_pred --HHH--hCCcEEEEcCCcc----------------------------chhh--hcCccEEEECCchhhHhHHHHH---H
Q 004942 289 --ELA--RRKIKVLEDRGEP----------------------------SFKT--SMKADLVIAGSAVCATWIDQYI---T 331 (722)
Q Consensus 289 --el~--~~gI~Vl~~~~~~----------------------------~~~~--~~k~DlVia~Sav~~~wi~~~i---~ 331 (722)
+.. ..++.++..++.. .+.. ..+||+||+|- |..++. .
T Consensus 329 ~~e~~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy-----~d~glva~ll 403 (784)
T TIGR02470 329 RLEKVYGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNY-----SDGNLVASLL 403 (784)
T ss_pred ccccccCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECC-----CchHHHHHHH
Confidence 111 3577777655322 1111 23799998874 333222 1
Q ss_pred hccCCCccEEEEEecc---------------hhHh-HH-H---HHhhhccccEEEEecHHhHHH-HhhH--HHhhhhhcc
Q 004942 332 RFPAGGSQVVWWIMEN---------------RREY-FD-R---AKLVLDRVKLLVFLSESQTKQ-WLTW--CEEEKLKLR 388 (722)
Q Consensus 332 ~~~~g~~~ivw~I~e~---------------r~~y-f~-~---~k~~l~rvk~li~lS~~~~~~-~~~~--~~~~~i~l~ 388 (722)
....+.+++ ...|.. ...| |. + -...++.++.+|..+...... .... +... ..+.
T Consensus 404 a~~lgVP~v-~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~-~~ft 481 (784)
T TIGR02470 404 ARKLGVTQC-TIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESH-QAFT 481 (784)
T ss_pred HHhcCCCEE-EECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhc-cccc
Confidence 122223322 112210 0111 11 1 123455578888887542110 0000 1000 0001
Q ss_pred CCCccccc--CCCcccceEEeecCCCCCCCCCchhHHHHhh-----------hhHHHHHHHhCC--CCCCEEEEEEecCC
Q 004942 389 SQPAVVPL--SVNDELAFVAGFTCSLNTPTSSPEKMREKRN-----------LLRDSVRKEMGL--TDQDMLVLSLSSIN 453 (722)
Q Consensus 389 ~~~~vv~l--~v~~~~~~v~vIpngid~~~f~~~~~~ekr~-----------~~r~~~R~elgl--~~~~~lIl~vGri~ 453 (722)
.|.+..+ |++.....+.+||+|+|+..|.|.....+|. ..+...++.+|+ ..++++|+++||+.
T Consensus 482 -~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~ 560 (784)
T TIGR02470 482 -MPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLD 560 (784)
T ss_pred -ccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCC
Confidence 1112211 3332233568999999999887755432221 012234577886 45678999999999
Q ss_pred CCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCccc
Q 004942 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (722)
Q Consensus 454 ~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (722)
+.||++.|++|+..+.+..+.
T Consensus 561 ~~KGid~LIeA~~~l~~l~~~----------------------------------------------------------- 581 (784)
T TIGR02470 561 RVKNLTGLVECYGRSPKLREL----------------------------------------------------------- 581 (784)
T ss_pred ccCCHHHHHHHHHHhHhhCCC-----------------------------------------------------------
Confidence 999999999999877433222
Q ss_pred ccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCC-CchhHHHHHHHHHhcCCCCCcEEeCC
Q 004942 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSN-KVPYVKEILEFLSQHSNLSKAMLWTP 612 (722)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn-~~~Y~~el~~~l~~~~~L~~~V~f~G 612 (722)
.+|+++|.|.... .+.+. ...+.+++.+ +++.+++.++|.|+|
T Consensus 582 --------------------------~~LVIVGGg~~~~---------~s~d~ee~~~i~~L~~-la~~~gL~g~V~flG 625 (784)
T TIGR02470 582 --------------------------VNLVVVAGKLDAK---------ESKDREEQAEIEKMHN-LIDQYQLHGQIRWIG 625 (784)
T ss_pred --------------------------eEEEEEeCCcccc---------cccchhHHHHHHHHHH-HHHHhCCCCeEEEcc
Confidence 3466666553210 00000 0112233333 334559999999999
Q ss_pred ch---hhHHHHHH----HcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHH
Q 004942 613 AT---TRVASLYS----AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQ 685 (722)
Q Consensus 613 ~~---~dv~~lys----aADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~ 685 (722)
.+ .++.++|. .+|+||+||. .|+||++++||||||+|||+|+.||+.|+|.++.+|+++++.|+ +++|+
T Consensus 626 ~~~~~~~~~elyr~iAd~adVfV~PS~--~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~--eaLA~ 701 (784)
T TIGR02470 626 AQLNRVRNGELYRYIADTKGIFVQPAL--YEAFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHG--EEAAE 701 (784)
T ss_pred CcCCcccHHHHHHHhhccCcEEEECCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCH--HHHHH
Confidence 75 34555554 2479999996 99999999999999999999999999999999999999999998 99999
Q ss_pred HHHHhh----cCHHHHHHHHHHHHHHH-HhhcHHHHHHHHH
Q 004942 686 NLRYLL----KNPSVRERMAMEGRKKS-NGLAERHSLGRYC 721 (722)
Q Consensus 686 aI~~LL----~np~~r~~mg~~grk~v-e~~~~~~~~~~Y~ 721 (722)
+|..++ .||+.|++|+.+|++++ ++|+|+.++++|.
T Consensus 702 aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll 742 (784)
T TIGR02470 702 KIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLL 742 (784)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999876 69999999999999998 5599999999875
No 46
>PLN02939 transferase, transferring glycosyl groups
Probab=99.97 E-value=4.3e-28 Score=284.94 Aligned_cols=355 Identities=16% Similarity=0.157 Sum_probs=244.6
Q ss_pred cEEEEEeCCC----CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHH--------------------------Hh
Q 004942 243 RKFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL--------------------------AR 292 (722)
Q Consensus 243 kkillI~hel----s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el--------------------------~~ 292 (722)
.+|++|+-|. ..||-.-++-.|+++|.+.||+|.||++.++.-..... ..
T Consensus 482 mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~ 561 (977)
T PLN02939 482 LHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTGTV 561 (977)
T ss_pred CEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEEEEE
Confidence 6999999998 68899999999999999999999999976542110110 01
Q ss_pred CCcEEEEcCCc--------------c----ch----------hh--hcCccEEEECCchhhHhHHHHHHhc---cCCCcc
Q 004942 293 RKIKVLEDRGE--------------P----SF----------KT--SMKADLVIAGSAVCATWIDQYITRF---PAGGSQ 339 (722)
Q Consensus 293 ~gI~Vl~~~~~--------------~----~~----------~~--~~k~DlVia~Sav~~~wi~~~i~~~---~~g~~~ 339 (722)
.||+++.+... . +| .. ..+|||||+|--.++-....+...+ .....+
T Consensus 562 ~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~~k 641 (977)
T PLN02939 562 EGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFNSAR 641 (977)
T ss_pred CCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCCCCc
Confidence 35666654310 0 11 11 2599999877432221111111111 112234
Q ss_pred EEEEEecch----------------hHhH--------------HHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccC
Q 004942 340 VVWWIMENR----------------REYF--------------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRS 389 (722)
Q Consensus 340 ivw~I~e~r----------------~~yf--------------~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~ 389 (722)
++..||-.. ..+| ...+..+.+.+.++++|+...+...+ +.+ .+.
T Consensus 642 tVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~t---e~G--~GL 716 (977)
T PLN02939 642 ICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRS---EGG--RGL 716 (977)
T ss_pred EEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHH---Hhc--cch
Confidence 666666321 0111 01122233478889999886443222 110 111
Q ss_pred CCcccccCCCcccceEEeecCCCCCCCCCchhH-----------HHHhhhhHHHHHHHhCCCC---CCEEEEEEecCCCC
Q 004942 390 QPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKM-----------REKRNLLRDSVRKEMGLTD---QDMLVLSLSSINPG 455 (722)
Q Consensus 390 ~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~-----------~ekr~~~r~~~R~elgl~~---~~~lIl~vGri~~~ 455 (722)
... +. .....+.+||||+|+..|.|... .+.+...+..+|+++|++. +.++|++|||+.+.
T Consensus 717 ~~~---L~--~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~Q 791 (977)
T PLN02939 717 QDT---LK--FHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQ 791 (977)
T ss_pred HHH---hc--cccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcc
Confidence 110 00 01123589999999999887542 1122334678999999984 45899999999999
Q ss_pred CCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCccccc
Q 004942 456 KGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKN 535 (722)
Q Consensus 456 Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (722)
||++.|++|+..+.+. +
T Consensus 792 KGiDlLleA~~~Ll~~--d------------------------------------------------------------- 808 (977)
T PLN02939 792 KGVHLIRHAIYKTAEL--G------------------------------------------------------------- 808 (977)
T ss_pred cChHHHHHHHHHHhhc--C-------------------------------------------------------------
Confidence 9999999999887531 2
Q ss_pred CCCCCcccccCCCCccccCCcccceeEEEcCCchhH---HHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCC
Q 004942 536 LLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQ---QALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTP 612 (722)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~---~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G 612 (722)
.+|+++|+|++. +.++.++ +.+++.++|.|+|
T Consensus 809 ------------------------vqLVIvGdGp~~~~e~eL~~La---------------------~~l~l~drV~FlG 843 (977)
T PLN02939 809 ------------------------GQFVLLGSSPVPHIQREFEGIA---------------------DQFQSNNNIRLIL 843 (977)
T ss_pred ------------------------CEEEEEeCCCcHHHHHHHHHHH---------------------HHcCCCCeEEEEe
Confidence 468889999753 3333333 3447778999999
Q ss_pred chhh--HHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc---------CccEEEECCCCccHH
Q 004942 613 ATTR--VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH---------NVTGLLHPPGHPGAQ 681 (722)
Q Consensus 613 ~~~d--v~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~---------g~tGlLvp~~d~~~e 681 (722)
..++ ...+|++||+||+||+ .|+||++++|||+||+|+|++++||+.|+|.+ +.+|++++++|+ +
T Consensus 844 ~~de~lah~IYAaADIFLmPSr--~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~--e 919 (977)
T PLN02939 844 KYDEALSHSIYAASDMFIIPSM--FEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDE--Q 919 (977)
T ss_pred ccCHHHHHHHHHhCCEEEECCC--ccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCH--H
Confidence 7754 4689999999999997 89999999999999999999999999999865 579999999998 9
Q ss_pred HHHHHHHHhhc----CHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 682 VLAQNLRYLLK----NPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 682 ~LA~aI~~LL~----np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
+|+++|.+++. ||+.|++|+.++.. ++|+|+.++++|.
T Consensus 920 aLa~AL~rAL~~~~~dpe~~~~L~~~am~--~dFSWe~~A~qYe 961 (977)
T PLN02939 920 GLNSALERAFNYYKRKPEVWKQLVQKDMN--IDFSWDSSASQYE 961 (977)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHH--hcCCHHHHHHHHH
Confidence 99999998765 89999999987643 6799999999985
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.97 E-value=7e-28 Score=245.31 Aligned_cols=323 Identities=19% Similarity=0.214 Sum_probs=225.8
Q ss_pred EEEEEeCCC---CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcC-------------------
Q 004942 244 KFILIFHEL---SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDR------------------- 301 (722)
Q Consensus 244 killI~hel---s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~------------------- 301 (722)
||++++|.. ..||++..+.+||++|.+.||+|++++....... ..............
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPR-QDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDY 79 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCC-cccccccceeeccccccccCCCchhhhhHHHhc
Confidence 578888877 3479999999999999999999999995543221 11111222222210
Q ss_pred Cc----c---chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHHHHHhhhccccEEEEecHHhHH
Q 004942 302 GE----P---SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTK 374 (722)
Q Consensus 302 ~~----~---~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~~k~~l~rvk~li~lS~~~~~ 374 (722)
.. . .+....+||+|++++....... .+......+ .+++..+|+..... ..........+.++++|+...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~-~~~~~~~~~-~~~i~~~hd~~~~~-~~~~~~~~~~d~ii~~s~~~~~ 156 (359)
T cd03823 80 DNPAVVAEFARLLEDFRPDVVHFHHLQGLGVS-ILRAARDRG-IPIVLTLHDYWLIC-PRQGLFKKGGDAVIAPSRFLLD 156 (359)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCccchHHH-HHHHHHhcC-CCEEEEEeeeeeec-chhhhhccCCCEEEEeCHHHHH
Confidence 00 0 2334779999999875322111 111111122 33555554321100 0111112234778888887633
Q ss_pred HHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCC
Q 004942 375 QWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINP 454 (722)
Q Consensus 375 ~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~ 454 (722)
. . .+....+ ..+.+||||+|.+.+.+... +..++++.|+++|++.+
T Consensus 157 ~----~----~~~~~~~-----------~~~~vi~n~~~~~~~~~~~~---------------~~~~~~~~i~~~G~~~~ 202 (359)
T cd03823 157 R----Y----VANGLFA-----------EKISVIRNGIDLDRAKRPRR---------------APPGGRLRFGFIGQLTP 202 (359)
T ss_pred H----H----HHcCCCc-----------cceEEecCCcChhhcccccc---------------CCCCCceEEEEEecCcc
Confidence 2 1 1111111 13589999999888754331 23466789999999999
Q ss_pred CCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccc
Q 004942 455 GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRK 534 (722)
Q Consensus 455 ~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (722)
.||++.+++++..+.+ ++
T Consensus 203 ~k~~~~li~~~~~l~~--~~------------------------------------------------------------ 220 (359)
T cd03823 203 HKGVDLLLEAFKRLPR--GD------------------------------------------------------------ 220 (359)
T ss_pred ccCHHHHHHHHHHHHh--cC------------------------------------------------------------
Confidence 9999999999999865 33
Q ss_pred cCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch
Q 004942 535 NLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT 614 (722)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~ 614 (722)
++++++|.|+.....+... +...+|.++|..
T Consensus 221 -------------------------~~l~i~G~~~~~~~~~~~~------------------------~~~~~v~~~g~~ 251 (359)
T cd03823 221 -------------------------IELVIVGNGLELEEESYEL------------------------EGDPRVEFLGAY 251 (359)
T ss_pred -------------------------cEEEEEcCchhhhHHHHhh------------------------cCCCeEEEeCCC
Confidence 4577888887665444322 345689999987
Q ss_pred --hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhc
Q 004942 615 --TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (722)
Q Consensus 615 --~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~ 692 (722)
+++.++|+.||++++||. ..|++|++++||||||+|||+|+.|+..|++.++.+|++++++|+ ++++++|..+++
T Consensus 252 ~~~~~~~~~~~ad~~i~ps~-~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~--~~l~~~i~~l~~ 328 (359)
T cd03823 252 PQEEIDDFYAEIDVLVVPSI-WPENFPLVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGDA--EDLAAALERLID 328 (359)
T ss_pred CHHHHHHHHHhCCEEEEcCc-ccCCCChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEECCCCH--HHHHHHHHHHHh
Confidence 899999999999999996 379999999999999999999999999999999999999999998 999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 693 NPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 693 np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
|++.+++|++++++.... +.++++|.
T Consensus 329 ~~~~~~~~~~~~~~~~~~---~~~~~~~~ 354 (359)
T cd03823 329 DPDLLERLRAGIEPPRSI---EDQAEEYL 354 (359)
T ss_pred ChHHHHHHHHhHHHhhhH---HHHHHHHH
Confidence 999999999999887763 55555553
No 48
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.97 E-value=2.6e-28 Score=250.31 Aligned_cols=333 Identities=19% Similarity=0.207 Sum_probs=236.0
Q ss_pred EEEEEeCCCCC---CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEE--------EEcCCcc------ch
Q 004942 244 KFILIFHELSM---TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKV--------LEDRGEP------SF 306 (722)
Q Consensus 244 killI~hels~---gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~V--------l~~~~~~------~~ 306 (722)
||+++++.+.. ||++..+.+|+++|.+.|++|.+++.+................ ....... ..
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 57777777754 9999999999999999999999999776543322221111110 0000000 22
Q ss_pred hhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchh-------------HhHHHHHhhhccccEEEEecHHhH
Q 004942 307 KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR-------------EYFDRAKLVLDRVKLLVFLSESQT 373 (722)
Q Consensus 307 ~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~-------------~yf~~~k~~l~rvk~li~lS~~~~ 373 (722)
....++|+||+++...... ...+ .++++++|+... .+.......+.+.+.++++|+...
T Consensus 81 ~~~~~~Dii~~~~~~~~~~-------~~~~-~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~ 152 (365)
T cd03809 81 LLLLGLDLLHSPHNTAPLL-------RLRG-VPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATK 152 (365)
T ss_pred hhhcCCCeeeecccccCcc-------cCCC-CCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHH
Confidence 2256899998886543222 1222 335566654211 111112334556888999998864
Q ss_pred HHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCC
Q 004942 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (722)
Q Consensus 374 ~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~ 453 (722)
+.....+ ... ...+.++|||+|...+.+..... +.......++..|+++|++.
T Consensus 153 ~~~~~~~-------~~~-----------~~~~~vi~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~~~G~~~ 205 (365)
T cd03809 153 RDLLRYL-------GVP-----------PDKIVVIPLGVDPRFRPPPAEAE---------VLRALYLLPRPYFLYVGTIE 205 (365)
T ss_pred HHHHHHh-------CcC-----------HHHEEeeccccCccccCCCchHH---------HHHHhcCCCCCeEEEeCCCc
Confidence 4311111 111 11358999999998886654311 33334456678999999999
Q ss_pred CCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCccc
Q 004942 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (722)
Q Consensus 454 ~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (722)
+.||++.+++++..+.++.+.
T Consensus 206 ~~K~~~~~l~~~~~~~~~~~~----------------------------------------------------------- 226 (365)
T cd03809 206 PRKNLERLLEAFARLPAKGPD----------------------------------------------------------- 226 (365)
T ss_pred cccCHHHHHHHHHHHHHhcCC-----------------------------------------------------------
Confidence 999999999999999876543
Q ss_pred ccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCc
Q 004942 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (722)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~ 613 (722)
++++++|.+........ ..+ +..++.++|.|+|.
T Consensus 227 --------------------------~~l~i~G~~~~~~~~~~-------------------~~~-~~~~~~~~v~~~g~ 260 (365)
T cd03809 227 --------------------------PKLVIVGKRGWLNEELL-------------------ARL-RELGLGDRVRFLGY 260 (365)
T ss_pred --------------------------CCEEEecCCccccHHHH-------------------HHH-HHcCCCCeEEECCC
Confidence 34566666543321111 111 23377889999998
Q ss_pred h--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhh
Q 004942 614 T--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL 691 (722)
Q Consensus 614 ~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL 691 (722)
. +++..+|++||++++||. .|++|++++||||+|+|||+++.|+..|++.+ +|+++++.++ ++++++|..++
T Consensus 261 ~~~~~~~~~~~~~d~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~--~~~~~~~~~~--~~~~~~i~~l~ 334 (365)
T cd03809 261 VSDEELAALYRGARAFVFPSL--YEGFGLPVLEAMACGTPVIASNISSLPEVAGD--AALYFDPLDP--EALAAAIERLL 334 (365)
T ss_pred CChhHHHHHHhhhhhhcccch--hccCCCCHHHHhcCCCcEEecCCCCccceecC--ceeeeCCCCH--HHHHHHHHHHh
Confidence 7 789999999999999997 89999999999999999999999999999964 6889998888 99999999999
Q ss_pred cCHHHHHHHHHHHHHHHHhhcHHHHHHHHHC
Q 004942 692 KNPSVRERMAMEGRKKSNGLAERHSLGRYCN 722 (722)
Q Consensus 692 ~np~~r~~mg~~grk~ve~~~~~~~~~~Y~~ 722 (722)
.|++.+.+|++++++.+++|+|+..+++|.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~sw~~~~~~~~~ 365 (365)
T cd03809 335 EDPALREELRERGLARAKRFSWEKTARRTLD 365 (365)
T ss_pred cCHHHHHHHHHHHHHHHHhCCHHHHHHHHhC
Confidence 9999999999999998999999999999864
No 49
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.96 E-value=4.1e-27 Score=237.48 Aligned_cols=335 Identities=25% Similarity=0.373 Sum_probs=240.2
Q ss_pred EEEEeCCCCC---CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhC----------CcEEE-EcCCcc------
Q 004942 245 FILIFHELSM---TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR----------KIKVL-EDRGEP------ 304 (722)
Q Consensus 245 illI~hels~---gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~----------gI~Vl-~~~~~~------ 304 (722)
|++++|.... ||++..+.+++++|.+.|++|.+++.............. ..... ......
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAA 80 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHH
Confidence 4677777764 999999999999999999999999965443222111000 00000 000000
Q ss_pred ----chhh--hcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhH-------hHHHHHhhhccccEEEEecHH
Q 004942 305 ----SFKT--SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE-------YFDRAKLVLDRVKLLVFLSES 371 (722)
Q Consensus 305 ----~~~~--~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~-------yf~~~k~~l~rvk~li~lS~~ 371 (722)
.+.. ..+||+|+++......++...+.... + .++++++|..... +....+..+.+++.+++.|+.
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~-~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~ 158 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKL-G-IPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEA 158 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhc-C-CCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHH
Confidence 3444 78999999885443333333333222 2 2466666542211 112233455668889999988
Q ss_pred hHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEec
Q 004942 372 QTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSS 451 (722)
Q Consensus 372 ~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGr 451 (722)
..+. . .+... + ...+.++|+|+|...+.+..... . ...+...+.+.++++|+
T Consensus 159 ~~~~----~----~~~~~-~----------~~~~~~i~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~i~~~g~ 210 (377)
T cd03798 159 LADE----L----KALGI-D----------PEKVTVIPNGVDTERFSPADRAE-------A--RKLGLPEDKKVILFVGR 210 (377)
T ss_pred HHHH----H----HHhcC-C----------CCceEEcCCCcCcccCCCcchHH-------H--HhccCCCCceEEEEecc
Confidence 6443 1 11111 1 11358999999998887654311 1 34455667889999999
Q ss_pred CCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCc
Q 004942 452 INPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEP 531 (722)
Q Consensus 452 i~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (722)
+.+.||++.++++++.+.++.++
T Consensus 211 ~~~~k~~~~li~~~~~~~~~~~~--------------------------------------------------------- 233 (377)
T cd03798 211 LVPRKGIDYLIEALARLLKKRPD--------------------------------------------------------- 233 (377)
T ss_pred CccccCHHHHHHHHHHHHhcCCC---------------------------------------------------------
Confidence 99999999999999998765433
Q ss_pred ccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeC
Q 004942 532 VRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWT 611 (722)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~ 611 (722)
++++++|.|+..+.++.++. ..++.++|.+.
T Consensus 234 ----------------------------~~l~i~g~~~~~~~~~~~~~---------------------~~~~~~~v~~~ 264 (377)
T cd03798 234 ----------------------------VHLVIVGDGPLREALEALAA---------------------ELGLEDRVTFL 264 (377)
T ss_pred ----------------------------eEEEEEcCCcchHHHHHHHH---------------------hcCCcceEEEe
Confidence 56788888887777666653 22677899999
Q ss_pred Cch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHH
Q 004942 612 PAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRY 689 (722)
Q Consensus 612 G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~ 689 (722)
|.. +++.++|..||++++||. .|++|++++|||+||+|||+++.|+..|++.++.+|+++++.|+ ++++++|..
T Consensus 265 g~~~~~~~~~~~~~ad~~i~~~~--~~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~~~~~--~~l~~~i~~ 340 (377)
T cd03798 265 GAVPHEEVPAYYAAADVFVLPSL--REGFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVPPGDP--EALAEAILR 340 (377)
T ss_pred CCCCHHHHHHHHHhcCeeecchh--hccCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEECCCCH--HHHHHHHHH
Confidence 986 679999999999999997 79999999999999999999999999999999999999999998 999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHH-hhcHHHHHHHHH
Q 004942 690 LLKNPSVRERMAMEGRKKSN-GLAERHSLGRYC 721 (722)
Q Consensus 690 LL~np~~r~~mg~~grk~ve-~~~~~~~~~~Y~ 721 (722)
++++++. ++..++++.+. .|+|+..+++|.
T Consensus 341 ~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~ 371 (377)
T cd03798 341 LLADPWL--RLGRAARRRVAERFSWENVAERLL 371 (377)
T ss_pred HhcCcHH--HHhHHHHHHHHHHhhHHHHHHHHH
Confidence 9999987 66777777764 489998888775
No 50
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.96 E-value=3.8e-27 Score=258.60 Aligned_cols=334 Identities=14% Similarity=0.110 Sum_probs=225.2
Q ss_pred EEEEEeCCCCCC-cHHHHHHHHHHHHHhC--CCEEEEEEEcCCCCChhHH----------HhCCcEEEEcC-C-cc----
Q 004942 244 KFILIFHELSMT-GAPLSMMELATELLSC--GATVSAVVLSKRGGLMPEL----------ARRKIKVLEDR-G-EP---- 304 (722)
Q Consensus 244 killI~hels~g-Gaplsm~eLA~eL~s~--G~~VsvV~ls~~g~l~~el----------~~~gI~Vl~~~-~-~~---- 304 (722)
.|.++.++++.| |++..+++.+.+|.+. +++|++.|......-...+ ...+++++... . ..
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEAS 81 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccc
Confidence 467888888888 9999999999999999 8899999855433211111 13455644431 1 11
Q ss_pred -----------------chhh--hcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecch---hHh-----------
Q 004942 305 -----------------SFKT--SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR---REY----------- 351 (722)
Q Consensus 305 -----------------~~~~--~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r---~~y----------- 351 (722)
.++. ..+||++|.++.....+.- ..... ..+++.++|++. +..
T Consensus 82 ~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~---~~~~~-~~~~i~y~h~P~~~~d~l~~~~~~~~~~~ 157 (419)
T cd03806 82 TYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPL---VRLLG-GCPVGAYVHYPTISTDMLQKVRSREASYN 157 (419)
T ss_pred cCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHH---HHHhc-CCeEEEEecCCcchHHHHHHHhhcccccc
Confidence 1111 3579999888644333322 22212 335888888651 111
Q ss_pred ---------------------HH-HHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeec
Q 004942 352 ---------------------FD-RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFT 409 (722)
Q Consensus 352 ---------------------f~-~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIp 409 (722)
|+ .....+..++.+++.|+.+.+. +.-.... . ..+.+||
T Consensus 158 ~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~---------~~~~~~~-------~---~~~~vi~ 218 (419)
T cd03806 158 NSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNH---------IRSLWKR-------N---TKPSIVY 218 (419)
T ss_pred CccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHH---------HHHHhCc-------C---CCcEEEc
Confidence 00 1112234578889998887443 1111111 1 1247999
Q ss_pred CCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccc
Q 004942 410 CSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRK 489 (722)
Q Consensus 410 ngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~ 489 (722)
+|+|++.|.+... ....++..|+|+||+.+.||++.+++|+..+.++.+..
T Consensus 219 ~gvd~~~~~~~~~---------------~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~-------------- 269 (419)
T cd03806 219 PPCDVEELLKLPL---------------DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEE-------------- 269 (419)
T ss_pred CCCCHHHhccccc---------------ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCccc--------------
Confidence 9999877754321 01234678999999999999999999999998765540
Q ss_pred cCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCch
Q 004942 490 KSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK 569 (722)
Q Consensus 490 ~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~ 569 (722)
....++|+++|+|.
T Consensus 270 ------------------------------------------------------------------~~~~~~lvivG~~~ 283 (419)
T cd03806 270 ------------------------------------------------------------------IKEKIKLVLIGSCR 283 (419)
T ss_pred ------------------------------------------------------------------ccCceEEEEEcCCC
Confidence 01235788888874
Q ss_pred hHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHH
Q 004942 570 QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMA 647 (722)
Q Consensus 570 ~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA 647 (722)
... +..|.+++. .+++.++++++|.|+|.. +++..+|+.||++|+||. .|+||++++||||
T Consensus 284 ~~~--------------~~~~~~~L~-~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~--~E~Fgi~~lEAMa 346 (419)
T cd03806 284 NED--------------DEKRVEDLK-LLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMW--NEHFGIGVVEYMA 346 (419)
T ss_pred Ccc--------------cHHHHHHHH-HHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCc--cCCcccHHHHHHH
Confidence 211 122333433 333445899999999974 789999999999999997 8999999999999
Q ss_pred hCCCEEEcCCCCh-hhhhc---cCccEEEECCCCccHHHHHHHHHHhhcCHH-HHHHHHHHHHHHHHhhcHHHH
Q 004942 648 FGVPVLGTDAGGT-KEIVE---HNVTGLLHPPGHPGAQVLAQNLRYLLKNPS-VRERMAMEGRKKSNGLAERHS 716 (722)
Q Consensus 648 ~GlPVVaTd~GG~-~EIVe---~g~tGlLvp~~d~~~e~LA~aI~~LL~np~-~r~~mg~~grk~ve~~~~~~~ 716 (722)
||+|||+++.||. .|+++ ++.+|++++ |+ +++|++|.+++++++ .++.++.++++..++|+++..
T Consensus 347 ~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--d~--~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~~f 416 (419)
T cd03806 347 AGLIPLAHASGGPLLDIVVPWDGGPTGFLAS--TA--EEYAEAIEKILSLSEEERLRIRRAARSSVKRFSDEEF 416 (419)
T ss_pred cCCcEEEEcCCCCchheeeccCCCCceEEeC--CH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHHHh
Confidence 9999999999775 67888 889999974 66 999999999999665 556666666665566777654
No 51
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.96 E-value=2.6e-27 Score=259.52 Aligned_cols=318 Identities=14% Similarity=0.127 Sum_probs=207.7
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEc----------------------
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLED---------------------- 300 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~---------------------- 300 (722)
.||++|...+.+|||+..+++||+.|.+.||+|.++.....++..++.. ..++....
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSH-QNYPQVIKHTPRMTAMANIALFRLFNRDLF 79 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCccccccc-CCcceEEEecccHHHHHHHHHHHhcchhhc
Confidence 4899999999999999999999999999999999999876665543321 11111100
Q ss_pred CCcc---chh-hhcCccEEEECCchhh---H-hHHHHHH--hccCCCccEEEEEecchh-----H---------------
Q 004942 301 RGEP---SFK-TSMKADLVIAGSAVCA---T-WIDQYIT--RFPAGGSQVVWWIMENRR-----E--------------- 350 (722)
Q Consensus 301 ~~~~---~~~-~~~k~DlVia~Sav~~---~-wi~~~i~--~~~~g~~~ivw~I~e~r~-----~--------------- 350 (722)
.... ++. ...+||+||+|-.+.. . .+..+.. .......+++|..|..-. +
T Consensus 80 ~~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~C 159 (405)
T PRK10125 80 GNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKC 159 (405)
T ss_pred chHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCC
Confidence 0000 222 4779999999865532 1 1112211 122333469998874321 0
Q ss_pred -----h----HH-------HHHhhhc----cccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecC
Q 004942 351 -----Y----FD-------RAKLVLD----RVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTC 410 (722)
Q Consensus 351 -----y----f~-------~~k~~l~----rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpn 410 (722)
| ++ ..+..+. ....++..|+...+. . .. .+.. ..+.+|||
T Consensus 160 p~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~----~----~~-~~~~-----------~~i~vI~N 219 (405)
T PRK10125 160 PTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADA----F----NS-LYGP-----------GRCRIINN 219 (405)
T ss_pred CCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHH----H----HH-HcCC-----------CCEEEeCC
Confidence 1 01 1111111 123455556554221 1 00 0111 13589999
Q ss_pred CCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEec-C-CCCCCHHHHHHHHHHhHHhCCCCcchhhhhcccccc
Q 004942 411 SLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSS-I-NPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGR 488 (722)
Q Consensus 411 gid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGr-i-~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~ 488 (722)
|+|++.+.+...... .+ .+.+..+|+++|+ + .++||++.|++|+..+. ++
T Consensus 220 Gid~~~~~~~~~~~~-------~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~---~~-------------- 271 (405)
T PRK10125 220 GIDMATEAILAELPP-------VR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG---DK-------------- 271 (405)
T ss_pred CcCcccccccccccc-------cc----cCCCCCEEEEEEeccccCCccHHHHHHHHHhCC---CC--------------
Confidence 999754322111000 01 1245668999999 4 47899999999998761 11
Q ss_pred ccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCc
Q 004942 489 KKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDG 568 (722)
Q Consensus 489 ~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G 568 (722)
.+|+++|+|
T Consensus 272 -----------------------------------------------------------------------~~L~ivG~g 280 (405)
T PRK10125 272 -----------------------------------------------------------------------IELHTFGKF 280 (405)
T ss_pred -----------------------------------------------------------------------eEEEEEcCC
Confidence 467778877
Q ss_pred hhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCc---hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHH
Q 004942 569 KQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA---TTRVASLYSAADVYVINSQGLGETFGRVTIEA 645 (722)
Q Consensus 569 ~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~---~~dv~~lysaADv~V~pS~~l~EgfglviLEA 645 (722)
+... ..+|.++|. ..++.++|++||+||+||. .|+||++++||
T Consensus 281 ~~~~--------------------------------~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~--~Egfp~vilEA 326 (405)
T PRK10125 281 SPFT--------------------------------AGNVVNHGFETDKRKLMSALNQMDALVFSSR--VDNYPLILCEA 326 (405)
T ss_pred Cccc--------------------------------ccceEEecCcCCHHHHHHHHHhCCEEEECCc--cccCcCHHHHH
Confidence 4321 123555554 4678999999999999997 89999999999
Q ss_pred HHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHH-H---HHHHHHHHHh-hcHHHHHHHH
Q 004942 646 MAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRER-M---AMEGRKKSNG-LAERHSLGRY 720 (722)
Q Consensus 646 MA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~-m---g~~grk~ve~-~~~~~~~~~Y 720 (722)
||||+|||+|++||++|++.++ +|++++++|+ ++||+. .+++.+++ + ..++++++.+ |+++.++++|
T Consensus 327 mA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d~--~~La~~-----~~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y 398 (405)
T PRK10125 327 LSIGVPVIATHSDAAREVLQKS-GGKTVSEEEV--LQLAQL-----SKPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEY 398 (405)
T ss_pred HHcCCCEEEeCCCChHHhEeCC-cEEEECCCCH--HHHHhc-----cCHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999875 9999999998 999974 35555443 2 3557777644 9999999998
Q ss_pred HC
Q 004942 721 CN 722 (722)
Q Consensus 721 ~~ 722 (722)
.+
T Consensus 399 ~~ 400 (405)
T PRK10125 399 VN 400 (405)
T ss_pred HH
Confidence 63
No 52
>PRK14098 glycogen synthase; Provisional
Probab=99.96 E-value=3.7e-27 Score=264.41 Aligned_cols=353 Identities=15% Similarity=0.166 Sum_probs=241.6
Q ss_pred cEEEEEeCCC----CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhH---H-------------------------
Q 004942 243 RKFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE---L------------------------- 290 (722)
Q Consensus 243 kkillI~hel----s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~e---l------------------------- 290 (722)
.+|++|+.|. ..||-.=++-.|.++|.++||+|.||.+... .+... +
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYG-TINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVT 84 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCC-chhhhhhccccceEEEEEEEeecCeeEEEEEEEe
Confidence 7899999998 7889999999999999999999999996542 22110 0
Q ss_pred --HhCCcEEEEcCC--------------------cc------------chhh--hcCccEEEECCchhhHhHHHHHHhcc
Q 004942 291 --ARRKIKVLEDRG--------------------EP------------SFKT--SMKADLVIAGSAVCATWIDQYITRFP 334 (722)
Q Consensus 291 --~~~gI~Vl~~~~--------------------~~------------~~~~--~~k~DlVia~Sav~~~wi~~~i~~~~ 334 (722)
...|++++.+.. +. .+.. ..+||+||+|.-. +.++..++....
T Consensus 85 ~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~-t~l~~~~l~~~~ 163 (489)
T PRK14098 85 ALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWY-AGLVPLLLKTVY 163 (489)
T ss_pred cccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcH-HHHHHHHHHHHh
Confidence 001244432210 00 1111 2489999988622 344444443221
Q ss_pred -----CCCccEEEEEecchh---------------HhHH----------HHHhhhccccEEEEecHHhHHHHhhHHHhhh
Q 004942 335 -----AGGSQVVWWIMENRR---------------EYFD----------RAKLVLDRVKLLVFLSESQTKQWLTWCEEEK 384 (722)
Q Consensus 335 -----~g~~~ivw~I~e~r~---------------~yf~----------~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~ 384 (722)
....+++..+|-... .++. ..+..+.+.+.++.+|+...+. +.....
T Consensus 164 ~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~e---i~~~~~ 240 (489)
T PRK14098 164 ADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEE---IAGDGE 240 (489)
T ss_pred hhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHH---hCcCCC
Confidence 112347777764211 0110 1122345578888888875332 110000
Q ss_pred hhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHH-----------HHhhhhHHHHHHHhCCCC--CCEEEEEEec
Q 004942 385 LKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMR-----------EKRNLLRDSVRKEMGLTD--QDMLVLSLSS 451 (722)
Q Consensus 385 i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~-----------ekr~~~r~~~R~elgl~~--~~~lIl~vGr 451 (722)
..++... + +. .....+.+||||+|++.|.|.... +.+...+..+++++|++. +.++|+++||
T Consensus 241 ~~~gl~~-~--l~--~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgR 315 (489)
T PRK14098 241 EAFGLDK-V--LE--ERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIIN 315 (489)
T ss_pred CCcChHH-H--HH--hcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEecc
Confidence 0001100 0 00 001245899999999999875321 112234678899999974 4679999999
Q ss_pred CCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCc
Q 004942 452 INPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEP 531 (722)
Q Consensus 452 i~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (722)
+.+.||++.|++|+..+.+. +
T Consensus 316 l~~~KG~d~li~a~~~l~~~--~--------------------------------------------------------- 336 (489)
T PRK14098 316 FDDFQGAELLAESLEKLVEL--D--------------------------------------------------------- 336 (489)
T ss_pred ccccCcHHHHHHHHHHHHhc--C---------------------------------------------------------
Confidence 99999999999999998642 2
Q ss_pred ccccCCCCCcccccCCCCccccCCcccceeEEEcCCchh--HHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEE
Q 004942 532 VRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQ--QQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML 609 (722)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~--~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~ 609 (722)
.+++++|+|+. ++.++.++. .++++|.
T Consensus 337 ----------------------------~~lvivG~G~~~~~~~l~~l~~-----------------------~~~~~V~ 365 (489)
T PRK14098 337 ----------------------------IQLVICGSGDKEYEKRFQDFAE-----------------------EHPEQVS 365 (489)
T ss_pred ----------------------------cEEEEEeCCCHHHHHHHHHHHH-----------------------HCCCCEE
Confidence 46888999874 345555543 2246899
Q ss_pred eCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc----CccEEEECCCCccHHHH
Q 004942 610 WTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH----NVTGLLHPPGHPGAQVL 683 (722)
Q Consensus 610 f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~----g~tGlLvp~~d~~~e~L 683 (722)
|+|.. +.+..+|++||++|+||. .|+||++.+|||+||+|+|+++.||+.|+|.+ +.+|++++++|+ ++|
T Consensus 366 ~~g~~~~~~~~~~~a~aDi~l~PS~--~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~--~~l 441 (489)
T PRK14098 366 VQTEFTDAFFHLAIAGLDMLLMPGK--IESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTP--EAL 441 (489)
T ss_pred EEEecCHHHHHHHHHhCCEEEeCCC--CCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCH--HHH
Confidence 99865 457899999999999997 99999999999999999999999999998864 679999999998 999
Q ss_pred HHHHHHhh---cCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 684 AQNLRYLL---KNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 684 A~aI~~LL---~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
+++|.+++ +|++.+++|+.++. .++|+|+.++++|.
T Consensus 442 a~ai~~~l~~~~~~~~~~~~~~~~~--~~~fsw~~~a~~y~ 480 (489)
T PRK14098 442 VAKLGEALALYHDEERWEELVLEAM--ERDFSWKNSAEEYA 480 (489)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHh--cCCCChHHHHHHHH
Confidence 99999865 68988888887664 35799999999986
No 53
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.96 E-value=2.5e-27 Score=263.51 Aligned_cols=270 Identities=22% Similarity=0.302 Sum_probs=202.2
Q ss_pred cCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecc--hh-----------------Hh---HHH-HHhhhccccEEE
Q 004942 310 MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMEN--RR-----------------EY---FDR-AKLVLDRVKLLV 366 (722)
Q Consensus 310 ~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~--r~-----------------~y---f~~-~k~~l~rvk~li 366 (722)
.++|++|+++...+.++...+.+. .+.+ +++..|.. ++ .| +.. .+..+.+++.++
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~-~~~p-~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~Ii 249 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKAR-RGTP-FLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRIT 249 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHH-hCCC-EEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 478999998764444444333333 3333 55555431 10 00 110 112334578888
Q ss_pred EecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEE
Q 004942 367 FLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLV 446 (722)
Q Consensus 367 ~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lI 446 (722)
++|+...+. . ...+..+ ..+.+||||+|.+.|.+.... ...++.++|
T Consensus 250 ~~s~~~~~~----~----~~~g~~~-----------~ki~vIpNgid~~~f~~~~~~--------------~~~~~~~~i 296 (475)
T cd03813 250 TLYEGNRER----Q----IEDGADP-----------EKIRVIPNGIDPERFAPARRA--------------RPEKEPPVV 296 (475)
T ss_pred ecCHHHHHH----H----HHcCCCH-----------HHeEEeCCCcCHHHcCCcccc--------------ccCCCCcEE
Confidence 888875321 1 2223222 135899999999888765421 123567899
Q ss_pred EEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhh
Q 004942 447 LSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFT 526 (722)
Q Consensus 447 l~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~ 526 (722)
+++||+.+.||++.+++|++.+.++.++
T Consensus 297 ~~vGrl~~~Kg~~~li~a~~~l~~~~p~---------------------------------------------------- 324 (475)
T cd03813 297 GLIGRVVPIKDIKTFIRAAAIVRKKIPD---------------------------------------------------- 324 (475)
T ss_pred EEEeccccccCHHHHHHHHHHHHHhCCC----------------------------------------------------
Confidence 9999999999999999999999877665
Q ss_pred ccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCC
Q 004942 527 QLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSK 606 (722)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~ 606 (722)
.+++++|.|++.. .|.++|.+. .+.+++.+
T Consensus 325 ---------------------------------~~l~IvG~g~~~~----------------~~~~e~~~l-i~~l~l~~ 354 (475)
T cd03813 325 ---------------------------------AEGWVIGPTDEDP----------------EYAEECREL-VESLGLED 354 (475)
T ss_pred ---------------------------------eEEEEECCCCcCh----------------HHHHHHHHH-HHHhCCCC
Confidence 4677788775322 233444333 33448999
Q ss_pred cEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc------CccEEEECCCCccH
Q 004942 607 AMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH------NVTGLLHPPGHPGA 680 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~------g~tGlLvp~~d~~~ 680 (722)
+|.|+| ..++.++|+.+|++|+||. .|+||++++||||||+|||+|+.||++|++++ |.+|++++++|+
T Consensus 355 ~V~f~G-~~~v~~~l~~aDv~vlpS~--~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d~-- 429 (475)
T cd03813 355 NVKFTG-FQNVKEYLPKLDVLVLTSI--SEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPPADP-- 429 (475)
T ss_pred eEEEcC-CccHHHHHHhCCEEEeCch--hhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEECCCCH--
Confidence 999999 7799999999999999997 89999999999999999999999999999998 679999999998
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHh-hcHHHHHHHHH
Q 004942 681 QVLAQNLRYLLKNPSVRERMAMEGRKKSNG-LAERHSLGRYC 721 (722)
Q Consensus 681 e~LA~aI~~LL~np~~r~~mg~~grk~ve~-~~~~~~~~~Y~ 721 (722)
++++++|.++++|++.+++|++++++++++ |+|+.++++|.
T Consensus 430 ~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~ 471 (475)
T cd03813 430 EALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDSYR 471 (475)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999999999999987 68899999986
No 54
>PLN00142 sucrose synthase
Probab=99.96 E-value=6.2e-27 Score=273.50 Aligned_cols=218 Identities=17% Similarity=0.213 Sum_probs=164.3
Q ss_pred eEEeecCCCCCCCCCchhHHHHhh-----------hhHHHHHHHhCC--CCCCEEEEEEecCCCCCCHHHHHHHHHHhHH
Q 004942 404 FVAGFTCSLNTPTSSPEKMREKRN-----------LLRDSVRKEMGL--TDQDMLVLSLSSINPGKGQLLLVESAQLMIE 470 (722)
Q Consensus 404 ~v~vIpngid~~~f~~~~~~ekr~-----------~~r~~~R~elgl--~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~ 470 (722)
.+.+||||+|...|.|....++|- ......++.+|+ ..+.++|+++||+.+.||++.|++|+..+.+
T Consensus 521 ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~ 600 (815)
T PLN00142 521 KFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKR 600 (815)
T ss_pred CeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHH
Confidence 568899999999887654322110 011223456776 3456789999999999999999999998865
Q ss_pred hCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCc
Q 004942 471 QEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDA 550 (722)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (722)
..++
T Consensus 601 l~~~---------------------------------------------------------------------------- 604 (815)
T PLN00142 601 LREL---------------------------------------------------------------------------- 604 (815)
T ss_pred hCCC----------------------------------------------------------------------------
Confidence 4333
Q ss_pred cccCCcccceeEEEcCCchhH--HHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch------hhHHHHHH
Q 004942 551 VSFGSGHLRRKVLSKSDGKQQ--QALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT------TRVASLYS 622 (722)
Q Consensus 551 ~~~g~~~~~~~lli~G~G~~~--~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~------~dv~~lys 622 (722)
.+|+++|.|... ..... ...+..++ ..+++.+++.++|.|+|.+ .+++.+|+
T Consensus 605 ---------~~LVIVGgg~d~~~s~d~e----------e~~el~~L-~~La~~lgL~~~V~flG~~~~~~~~~eLyr~ia 664 (815)
T PLN00142 605 ---------VNLVVVGGFIDPSKSKDRE----------EIAEIKKM-HSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIA 664 (815)
T ss_pred ---------cEEEEEECCccccccccHH----------HHHHHHHH-HHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHH
Confidence 356777766210 00000 00111222 2344556999999999864 34666666
Q ss_pred H-cCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHh----hcCHHHH
Q 004942 623 A-ADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYL----LKNPSVR 697 (722)
Q Consensus 623 a-ADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~L----L~np~~r 697 (722)
+ +|+||+||. .|+||++++||||||+|||+|+.||+.|+|.+|.+|+++++.|+ +++|++|..+ +.||+.|
T Consensus 665 daaDVfVlPS~--~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D~--eaLA~aI~~lLekLl~Dp~lr 740 (815)
T PLN00142 665 DTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHG--DEAANKIADFFEKCKEDPSYW 740 (815)
T ss_pred hhCCEEEeCCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCH--HHHHHHHHHHHHHhcCCHHHH
Confidence 4 699999997 99999999999999999999999999999999999999999998 9999998764 5799999
Q ss_pred HHHHHHHHHHH-HhhcHHHHHHHHH
Q 004942 698 ERMAMEGRKKS-NGLAERHSLGRYC 721 (722)
Q Consensus 698 ~~mg~~grk~v-e~~~~~~~~~~Y~ 721 (722)
++|+++|++++ ++|+|+.+++++.
T Consensus 741 ~~mg~~Ar~rv~e~FSWe~~A~rll 765 (815)
T PLN00142 741 NKISDAGLQRIYECYTWKIYAERLL 765 (815)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999998 5599999999875
No 55
>PLN02949 transferase, transferring glycosyl groups
Probab=99.95 E-value=2.6e-26 Score=256.31 Aligned_cols=339 Identities=15% Similarity=0.167 Sum_probs=226.8
Q ss_pred ccEEEEEeCCCCCC-cHHHHHHHHHHHHHhCCCEEEEEEEcCC--CCChh----HHHhCCcEE------EEc-CCcc---
Q 004942 242 SRKFILIFHELSMT-GAPLSMMELATELLSCGATVSAVVLSKR--GGLMP----ELARRKIKV------LED-RGEP--- 304 (722)
Q Consensus 242 ~kkillI~hels~g-Gaplsm~eLA~eL~s~G~~VsvV~ls~~--g~l~~----el~~~gI~V------l~~-~~~~--- 304 (722)
+++|.++.++++.| |++..+++.+.+|.++|+++.++..... ..-.. ...+.+|++ +.+ ....
T Consensus 33 ~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~~~~~~~ 112 (463)
T PLN02949 33 KRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRKRKWIEE 112 (463)
T ss_pred CcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEecccccccc
Confidence 46888888888777 9999999999999999995444443322 11111 222455522 222 1111
Q ss_pred ------------------chh--hhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhH--------------
Q 004942 305 ------------------SFK--TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE-------------- 350 (722)
Q Consensus 305 ------------------~~~--~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~-------------- 350 (722)
.+. ....|| |+..+...+.++. +.++ . ..++++++|++-..
T Consensus 113 ~~~~~~t~~~~~~~~~~l~~~~~~~~~p~-v~vDt~~~~~~~p--l~~~-~-~~~v~~yvH~p~~~~dm~~~v~~~~~~~ 187 (463)
T PLN02949 113 ETYPRFTMIGQSLGSVYLAWEALCKFTPL-YFFDTSGYAFTYP--LARL-F-GCKVVCYTHYPTISSDMISRVRDRSSMY 187 (463)
T ss_pred ccCCceehHHHHHHHHHHHHHHHHhcCCC-EEEeCCCcccHHH--HHHh-c-CCcEEEEEeCCcchHHHHHHHhhccccc
Confidence 111 123454 5566554445543 2232 2 35688999865211
Q ss_pred ------------------hHHHH----HhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEee
Q 004942 351 ------------------YFDRA----KLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGF 408 (722)
Q Consensus 351 ------------------yf~~~----k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vI 408 (722)
|+... .......+.+++.|+...+.... . .+. + + .+.++
T Consensus 188 ~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~------~-~~~-~-------~----~i~vv 248 (463)
T PLN02949 188 NNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEA------L-WRI-P-------E----RIKRV 248 (463)
T ss_pred CccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHH------H-cCC-C-------C----CeEEE
Confidence 10000 01113367788888876433100 0 111 1 1 24789
Q ss_pred cCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhcccccc
Q 004942 409 TCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGR 488 (722)
Q Consensus 409 pngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~ 488 (722)
++++|++.+...... -..++..++++||+.+.||++.+|+|++.+.++.+..
T Consensus 249 yp~vd~~~~~~~~~~---------------~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~------------- 300 (463)
T PLN02949 249 YPPCDTSGLQALPLE---------------RSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDAD------------- 300 (463)
T ss_pred cCCCCHHHcccCCcc---------------ccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhcccc-------------
Confidence 999987665322110 0133468999999999999999999999987643220
Q ss_pred ccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCc
Q 004942 489 KKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDG 568 (722)
Q Consensus 489 ~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G 568 (722)
....+|+++|+|
T Consensus 301 --------------------------------------------------------------------~~~~~LvIvG~~ 312 (463)
T PLN02949 301 --------------------------------------------------------------------VPRPKLQFVGSC 312 (463)
T ss_pred --------------------------------------------------------------------CCCcEEEEEeCC
Confidence 012567888887
Q ss_pred hhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHH
Q 004942 569 KQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAM 646 (722)
Q Consensus 569 ~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAM 646 (722)
+.. .+..|.+++.+.+ +.++++++|.|+|.. +++..+|+.||++|+||. .|+||++++|||
T Consensus 313 ~~~--------------~~~~~~~eL~~la-~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~--~E~FGivvlEAM 375 (463)
T PLN02949 313 RNK--------------EDEERLQKLKDRA-KELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMI--DEHFGISVVEYM 375 (463)
T ss_pred CCc--------------ccHHHHHHHHHHH-HHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc--cCCCChHHHHHH
Confidence 421 1123344444333 345899999999976 789999999999999996 999999999999
Q ss_pred HhCCCEEEcCCCChh-hhhcc---CccEEEECCCCccHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 647 AFGVPVLGTDAGGTK-EIVEH---NVTGLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 647 A~GlPVVaTd~GG~~-EIVe~---g~tGlLvp~~d~~~e~LA~aI~~LL~-np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
|||+|||+++.||.. |++.+ +.+|++++ ++ +++|++|.++++ +++.+++|+++|++.+++|+++.+.++|.
T Consensus 376 A~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--~~--~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~ 451 (463)
T PLN02949 376 AAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT--TV--EEYADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDFK 451 (463)
T ss_pred HcCCcEEEeCCCCCcceeeecCCCCcccccCC--CH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 999999999999974 78765 67899874 55 999999999998 67889999999999999999999998875
No 56
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.95 E-value=3.5e-26 Score=246.75 Aligned_cols=325 Identities=15% Similarity=0.162 Sum_probs=216.7
Q ss_pred EEEEeCCC---CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChh---HHH--hCCcEEEEcCCc-------------
Q 004942 245 FILIFHEL---SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP---ELA--RRKIKVLEDRGE------------- 303 (722)
Q Consensus 245 illI~hel---s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~---el~--~~gI~Vl~~~~~------------- 303 (722)
||+++|.. -..|..+-++.++++|.+ .|+|+++++....+-.. .+. -..+.++.....
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~-~~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAA-RHRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSLLGLLTG 79 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHh-cCcEEEEEeCCCcccHHHHHHHHHHhheeEEeecCcHHHHHHHHhhhcCC
Confidence 46777776 456779999999999966 59999999875433111 121 112222221100
Q ss_pred ----------c-------chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecc---------------hhHh
Q 004942 304 ----------P-------SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMEN---------------RREY 351 (722)
Q Consensus 304 ----------~-------~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~---------------r~~y 351 (722)
. ....+.++|+||+++...+.++.. ...+.+ .++-.|.. ...+
T Consensus 80 ~p~~~~~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~~~~----~~~~~p-~i~~~~d~~~~~~~~~~~~~~~~~~~~ 154 (397)
T TIGR03087 80 EPLSLPYYRSRRLARWVNALLAAEPVDAIVVFSSAMAQYVTP----HVRGVP-RIVDFVDVDSDKWLQYARTKRWPLRWI 154 (397)
T ss_pred CCCcchhhCCHHHHHHHHHHHhhCCCCEEEEeccccceeccc----cccCCC-eEeehhhHHHHHHHHHHhccCcchhHH
Confidence 0 112257999999987544333221 112223 22222110 0000
Q ss_pred HH--------HHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHH
Q 004942 352 FD--------RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMR 423 (722)
Q Consensus 352 f~--------~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ 423 (722)
+. ..+....+++.++++|+...+. . .+..... ...+.+||||+|++.|.+....
T Consensus 155 ~~~~~~~~~~~e~~~~~~ad~vi~~S~~~~~~----l----~~~~~~~----------~~~v~vipngvd~~~f~~~~~~ 216 (397)
T TIGR03087 155 YRREGRLLLAYERAIAARFDAATFVSRAEAEL----F----RRLAPEA----------AGRITAFPNGVDADFFSPDRDY 216 (397)
T ss_pred HHHHHHHHHHHHHHHHhhCCeEEEcCHHHHHH----H----HHhCCCC----------CCCeEEeecccchhhcCCCccc
Confidence 00 0122345688899999886442 1 0111111 1135799999999988764321
Q ss_pred HHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHH----HHHHhHHhCCCCcchhhhhccccccccCcccccccc
Q 004942 424 EKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVE----SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHL 499 (722)
Q Consensus 424 ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~Lle----A~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 499 (722)
. -.+..+..+|+|+|++.+.||++.++. ++..+.++.|+
T Consensus 217 ~------------~~~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~------------------------- 259 (397)
T TIGR03087 217 P------------NPYPPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPA------------------------- 259 (397)
T ss_pred c------------CCCCCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCC-------------------------
Confidence 0 012344568999999999999999884 45555554444
Q ss_pred cccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhh
Q 004942 500 RGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIG 579 (722)
Q Consensus 500 ~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~ 579 (722)
.+++++|+|+.. .++.+
T Consensus 260 ------------------------------------------------------------~~l~ivG~g~~~-~~~~l-- 276 (397)
T TIGR03087 260 ------------------------------------------------------------AEFYIVGAKPSP-AVRAL-- 276 (397)
T ss_pred ------------------------------------------------------------cEEEEECCCChH-HHHHh--
Confidence 468888998753 22222
Q ss_pred ccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC
Q 004942 580 SVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG 659 (722)
Q Consensus 580 ~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG 659 (722)
+...+|.|+|.++++..+|+.||++|+||+ ..||+|++++||||||+|||+|+.++
T Consensus 277 -----------------------~~~~~V~~~G~v~~~~~~~~~adv~v~Ps~-~~eG~~~~~lEAma~G~PVV~t~~~~ 332 (397)
T TIGR03087 277 -----------------------AALPGVTVTGSVADVRPYLAHAAVAVAPLR-IARGIQNKVLEAMAMAKPVVASPEAA 332 (397)
T ss_pred -----------------------ccCCCeEEeeecCCHHHHHHhCCEEEeccc-ccCCcccHHHHHHHcCCCEEecCccc
Confidence 223579999999999999999999999997 37999999999999999999999754
Q ss_pred hhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH-hhcHHHHHHHHH
Q 004942 660 TKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSN-GLAERHSLGRYC 721 (722)
Q Consensus 660 ~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve-~~~~~~~~~~Y~ 721 (722)
. .+...+.+|++++ +|+ ++++++|.++++|++.+++|+++|++.++ +|+|+..+++|.
T Consensus 333 ~-~i~~~~~~g~lv~-~~~--~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~ 391 (397)
T TIGR03087 333 E-GIDALPGAELLVA-ADP--ADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLD 391 (397)
T ss_pred c-cccccCCcceEeC-CCH--HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 2 3444445799887 777 99999999999999999999999999985 599999998875
No 57
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.95 E-value=1.8e-26 Score=257.21 Aligned_cols=322 Identities=15% Similarity=0.102 Sum_probs=221.0
Q ss_pred cccEEEEEeCCC--CCCcHHHHHHHHHHHHHhCC-CEEEEEEEcCCCC---------------ChhH--H---HhC---C
Q 004942 241 WSRKFILIFHEL--SMTGAPLSMMELATELLSCG-ATVSAVVLSKRGG---------------LMPE--L---ARR---K 294 (722)
Q Consensus 241 ~~kkillI~hel--s~gGaplsm~eLA~eL~s~G-~~VsvV~ls~~g~---------------l~~e--l---~~~---g 294 (722)
+++||++++... .++|+..++..++.+|.+.| |+|++|++..... ..++ . ... +
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 458999999888 89999999999999999999 7999999653211 0011 0 001 1
Q ss_pred cEEEEcCCcc-----------------chhhhcCccEEEECCchhhHhHH--HHHHhccCCCccEEEEEecchhHhHHHH
Q 004942 295 IKVLEDRGEP-----------------SFKTSMKADLVIAGSAVCATWID--QYITRFPAGGSQVVWWIMENRREYFDRA 355 (722)
Q Consensus 295 I~Vl~~~~~~-----------------~~~~~~k~DlVia~Sav~~~wi~--~~i~~~~~g~~~ivw~I~e~r~~yf~~~ 355 (722)
++-+..+.++ +...+.+||+||+++-....|.. ...+... .. ++-.+|.+-.+|+...
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~--~~-vV~tyHT~y~~Y~~~~ 159 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKF--RL-VIGIVHTNYLEYVKRE 159 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcC--Cc-EEEEECCChHHHHHHh
Confidence 1111111111 22347899999999877667752 2222211 22 5556777666776532
Q ss_pred Hh-----h--------h--ccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCch
Q 004942 356 KL-----V--------L--DRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPE 420 (722)
Q Consensus 356 k~-----~--------l--~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~ 420 (722)
.. . + ...+.++..|.... +....+...++|+|...|.+.
T Consensus 160 ~~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~--------------------------~l~~~~i~~v~GVd~~~f~~~ 213 (462)
T PLN02846 160 KNGRVKAFLLKYINSWVVDIYCHKVIRLSAATQ--------------------------DYPRSIICNVHGVNPKFLEIG 213 (462)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCEEEccCHHHH--------------------------HHhhCEEecCceechhhcCCC
Confidence 10 0 0 01233333332210 000112344589999988766
Q ss_pred hHHHHhhhhHHHHHHHhCCCCC--CEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCccccccc
Q 004942 421 KMREKRNLLRDSVRKEMGLTDQ--DMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHH 498 (722)
Q Consensus 421 ~~~ekr~~~r~~~R~elgl~~~--~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (722)
... .++... .++ ...++|+||+.+.||++.||+|++.+.+..++
T Consensus 214 ~~~---------~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~------------------------ 259 (462)
T PLN02846 214 KLK---------LEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKELSG------------------------ 259 (462)
T ss_pred ccc---------HhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhCCC------------------------
Confidence 421 222222 333 24689999999999999999999998765444
Q ss_pred ccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhh
Q 004942 499 LRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILI 578 (722)
Q Consensus 499 i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI 578 (722)
.+|+++|+|+++++|+.++
T Consensus 260 -------------------------------------------------------------~~l~ivGdGp~~~~L~~~a 278 (462)
T PLN02846 260 -------------------------------------------------------------LEVDLYGSGEDSDEVKAAA 278 (462)
T ss_pred -------------------------------------------------------------eEEEEECCCccHHHHHHHH
Confidence 5789999999999999888
Q ss_pred hccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCC
Q 004942 579 GSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG 658 (722)
Q Consensus 579 ~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~G 658 (722)
... ++...+ |.|.. +..++|..+|+||+||. .|+||++++||||||+|||+++++
T Consensus 279 ~~l---------------------~l~~~v-f~G~~-~~~~~~~~~DvFv~pS~--~Et~g~v~lEAmA~G~PVVa~~~~ 333 (462)
T PLN02846 279 EKL---------------------ELDVRV-YPGRD-HADPLFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHP 333 (462)
T ss_pred Hhc---------------------CCcEEE-ECCCC-CHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCcEEEecCC
Confidence 543 555444 88864 56689999999999997 999999999999999999999999
Q ss_pred ChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 659 GTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 659 G~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
+ .|++.++.+|++++ |. +++++++..+|.++. ++++.+++ ++|+|+...++|.
T Consensus 334 ~-~~~v~~~~ng~~~~--~~--~~~a~ai~~~l~~~~--~~~~~~a~---~~~SWe~~~~~l~ 386 (462)
T PLN02846 334 S-NEFFKQFPNCRTYD--DG--KGFVRATLKALAEEP--APLTDAQR---HELSWEAATERFL 386 (462)
T ss_pred C-cceeecCCceEecC--CH--HHHHHHHHHHHccCc--hhHHHHHH---HhCCHHHHHHHHH
Confidence 8 59999999998884 55 899999999998643 34444333 4899999999875
No 58
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.95 E-value=1.7e-26 Score=244.00 Aligned_cols=262 Identities=20% Similarity=0.318 Sum_probs=200.4
Q ss_pred cCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecch------------hHhHHHHHhhhccccEEEEecHHhHHHHh
Q 004942 310 MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR------------REYFDRAKLVLDRVKLLVFLSESQTKQWL 377 (722)
Q Consensus 310 ~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r------------~~yf~~~k~~l~rvk~li~lS~~~~~~~~ 377 (722)
.++|++|+++.....+ .+........ .+.++|... ..++......+.+++.+++.|+.+.+.
T Consensus 98 ~~~diii~~~~~~~~~---~~~~~~~~~~-~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~-- 171 (372)
T cd04949 98 TKPDVFILDRPTLDGQ---ALLNMKKAAK-VVVVLHSNHVSDNNDPVHSLINNFYEYVFENLDKVDGVIVATEQQKQD-- 171 (372)
T ss_pred CCCCEEEECCccccch---hHHhccCCce-EEEEEChHHhCCcccccccccchhhHHHHhChhhCCEEEEccHHHHHH--
Confidence 6889998887665444 1222222222 334444211 111122222345678889999887443
Q ss_pred hHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCC
Q 004942 378 TWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKG 457 (722)
Q Consensus 378 ~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg 457 (722)
+. ..... .. .+.+||+|++.+.+.+... ....+..++++|++.+.||
T Consensus 172 -l~------~~~~~-------~~---~v~~ip~g~~~~~~~~~~~----------------~~~~~~~i~~vgrl~~~K~ 218 (372)
T cd04949 172 -LQ------KQFGN-------YN---PIYTIPVGSIDPLKLPAQF----------------KQRKPHKIITVARLAPEKQ 218 (372)
T ss_pred -HH------HHhCC-------CC---ceEEEcccccChhhcccch----------------hhcCCCeEEEEEccCcccC
Confidence 11 11111 11 1579999999877655321 0134568999999999999
Q ss_pred HHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCC
Q 004942 458 QLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLL 537 (722)
Q Consensus 458 ~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (722)
++.+++++..+.++.|+
T Consensus 219 ~~~li~a~~~l~~~~~~--------------------------------------------------------------- 235 (372)
T cd04949 219 LDQLIKAFAKVVKQVPD--------------------------------------------------------------- 235 (372)
T ss_pred HHHHHHHHHHHHHhCCC---------------------------------------------------------------
Confidence 99999999999887666
Q ss_pred CCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhH
Q 004942 538 SPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRV 617 (722)
Q Consensus 538 ~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv 617 (722)
.+|.++|.|+....++.++. .+++.++|.|.|..+++
T Consensus 236 ----------------------~~l~i~G~g~~~~~~~~~~~---------------------~~~~~~~v~~~g~~~~~ 272 (372)
T cd04949 236 ----------------------ATLDIYGYGDEEEKLKELIE---------------------ELGLEDYVFLKGYTRDL 272 (372)
T ss_pred ----------------------cEEEEEEeCchHHHHHHHHH---------------------HcCCcceEEEcCCCCCH
Confidence 46788899988777766653 23788899999998999
Q ss_pred HHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCC-ChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHH
Q 004942 618 ASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG-GTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSV 696 (722)
Q Consensus 618 ~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~G-G~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~ 696 (722)
.++|+.||++|+||. .|+||++++||||||+|||+++.+ |..|++.++.+|++++++|+ ++|+++|..+++|++.
T Consensus 273 ~~~~~~ad~~v~~S~--~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~~~G~lv~~~d~--~~la~~i~~ll~~~~~ 348 (372)
T cd04949 273 DEVYQKAQLSLLTSQ--SEGFGLSLMEALSHGLPVISYDVNYGPSEIIEDGENGYLVPKGDI--EALAEAIIELLNDPKL 348 (372)
T ss_pred HHHHhhhhEEEeccc--ccccChHHHHHHhCCCCEEEecCCCCcHHHcccCCCceEeCCCcH--HHHHHHHHHHHcCHHH
Confidence 999999999999997 899999999999999999999987 89999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHH
Q 004942 697 RERMAMEGRKKSNGLAERHSLGRY 720 (722)
Q Consensus 697 r~~mg~~grk~ve~~~~~~~~~~Y 720 (722)
+++|+.++++.+++|+++.++++|
T Consensus 349 ~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 349 LQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhcC
Confidence 999999999999999999998875
No 59
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.95 E-value=7.3e-26 Score=254.91 Aligned_cols=220 Identities=16% Similarity=0.219 Sum_probs=175.0
Q ss_pred hccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhC
Q 004942 359 LDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMG 438 (722)
Q Consensus 359 l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elg 438 (722)
.+.++.++++|+.+.+...... -.... + ...+.+||+|++...+.+..
T Consensus 268 ~~~~D~iI~~S~~~~~~l~~~~----~~~~~-~----------~~ki~viP~g~~~~~~~~~~----------------- 315 (500)
T TIGR02918 268 ADYIDFFITATDIQNQILKNQF----KKYYN-I----------EPRIYTIPVGSLDELQYPEQ----------------- 315 (500)
T ss_pred hhhCCEEEECCHHHHHHHHHHh----hhhcC-C----------CCcEEEEcCCCcccccCccc-----------------
Confidence 3447889999988744211111 00000 0 12357999997654443221
Q ss_pred CCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccc
Q 004942 439 LTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNEL 518 (722)
Q Consensus 439 l~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~ 518 (722)
..++..|+++||+.+.||++.|++|+..+.++.|+
T Consensus 316 -~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~-------------------------------------------- 350 (500)
T TIGR02918 316 -ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPE-------------------------------------------- 350 (500)
T ss_pred -ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCC--------------------------------------------
Confidence 12356899999999999999999999999877665
Q ss_pred cccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHH
Q 004942 519 SVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFL 598 (722)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l 598 (722)
++|.++|+|++.+.++.++...
T Consensus 351 -----------------------------------------~~l~i~G~G~~~~~l~~~i~~~----------------- 372 (500)
T TIGR02918 351 -----------------------------------------LTFDIYGEGGEKQKLQKIINEN----------------- 372 (500)
T ss_pred -----------------------------------------eEEEEEECchhHHHHHHHHHHc-----------------
Confidence 5688899999888888777433
Q ss_pred HhcCCCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCC-ChhhhhccCccEEEECCC-
Q 004942 599 SQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG-GTKEIVEHNVTGLLHPPG- 676 (722)
Q Consensus 599 ~~~~~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~G-G~~EIVe~g~tGlLvp~~- 676 (722)
++.++|.|+|.+ ++.++|+.||++|+||. .||||++++||||||+|||+++++ |.+|+|++|.+|++++++
T Consensus 373 ----~l~~~V~f~G~~-~~~~~~~~adv~v~pS~--~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g~nG~lv~~~~ 445 (500)
T TIGR02918 373 ----QAQDYIHLKGHR-NLSEVYKDYELYLSAST--SEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDNKNGYLIPIDE 445 (500)
T ss_pred ----CCCCeEEEcCCC-CHHHHHHhCCEEEEcCc--cccccHHHHHHHHhCCCEEEecCCCCCHHHccCCCCEEEEeCCc
Confidence 778899999976 89999999999999997 999999999999999999999986 899999999999999853
Q ss_pred ---Cc-c-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 677 ---HP-G-AQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 677 ---d~-~-~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
|+ + +++||++|..++ +++.+++|+++|++.+++|+++.++++|.
T Consensus 446 ~~~d~~~~~~~la~~I~~ll-~~~~~~~~~~~a~~~a~~fs~~~v~~~w~ 494 (500)
T TIGR02918 446 EEDDEDQIITALAEKIVEYF-NSNDIDAFHEYSYQIAEGFLTANIIEKWK 494 (500)
T ss_pred cccchhHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 21 1 388999999999 46679999999999999999999999885
No 60
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.95 E-value=1.3e-25 Score=235.99 Aligned_cols=198 Identities=22% Similarity=0.296 Sum_probs=155.6
Q ss_pred hccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhC
Q 004942 359 LDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMG 438 (722)
Q Consensus 359 l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elg 438 (722)
+.+++.++++|+...+. .. +. ... + ..+||||+|++.|.+..
T Consensus 151 ~~~~d~ii~~S~~~~~~----~~----~~-~~~--------~----~~vi~~~~d~~~~~~~~----------------- 192 (351)
T cd03804 151 AARVDYFIANSRFVARR----IK----KY-YGR--------D----ATVIYPPVDTDRFTPAE----------------- 192 (351)
T ss_pred hcCCCEEEECCHHHHHH----HH----HH-hCC--------C----cEEECCCCCHhhcCcCC-----------------
Confidence 35678889999886443 10 00 111 1 26899999988775432
Q ss_pred CCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccc
Q 004942 439 LTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNEL 518 (722)
Q Consensus 439 l~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~ 518 (722)
..+..++++|++.+.||++.+++|+..+.
T Consensus 193 --~~~~~il~~G~~~~~K~~~~li~a~~~~~------------------------------------------------- 221 (351)
T cd03804 193 --EKEDYYLSVGRLVPYKRIDLAIEAFNKLG------------------------------------------------- 221 (351)
T ss_pred --CCCCEEEEEEcCccccChHHHHHHHHHCC-------------------------------------------------
Confidence 12346899999999999999999998651
Q ss_pred cccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHH
Q 004942 519 SVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFL 598 (722)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l 598 (722)
.+++++|+|++.+.++.
T Consensus 222 -----------------------------------------~~l~ivG~g~~~~~l~~---------------------- 238 (351)
T cd03804 222 -----------------------------------------KRLVVIGDGPELDRLRA---------------------- 238 (351)
T ss_pred -----------------------------------------CcEEEEECChhHHHHHh----------------------
Confidence 24788899987666553
Q ss_pred HhcCCCCCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCC
Q 004942 599 SQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPG 676 (722)
Q Consensus 599 ~~~~~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~ 676 (722)
++.++|.|+|.+ +++.++|++||++++|| . |+||++++||||||+|||+++.||..|++.++.+|++++++
T Consensus 239 ----~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps--~-e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~ 311 (351)
T cd03804 239 ----KAGPNVTFLGRVSDEELRDLYARARAFLFPA--E-EDFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQ 311 (351)
T ss_pred ----hcCCCEEEecCCCHHHHHHHHHhCCEEEECC--c-CCCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCC
Confidence 234689999987 45999999999999999 3 99999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 004942 677 HPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRY 720 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y 720 (722)
++ ++++++|..+++|++ .+.+++++.+++|+++...+++
T Consensus 312 ~~--~~la~~i~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 350 (351)
T cd03804 312 TV--ESLAAAVERFEKNED---FDPQAIRAHAERFSESRFREKI 350 (351)
T ss_pred CH--HHHHHHHHHHHhCcc---cCHHHHHHHHHhcCHHHHHHHh
Confidence 98 999999999999984 2344455566678888777654
No 61
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.94 E-value=5.5e-25 Score=240.08 Aligned_cols=223 Identities=23% Similarity=0.312 Sum_probs=181.5
Q ss_pred hhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHH
Q 004942 357 LVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKE 436 (722)
Q Consensus 357 ~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~e 436 (722)
..+.+++.++++|+..... .. -.++.. ...+.++|+|++.+.+.+...
T Consensus 179 ~~~~~~d~ii~~S~~~~~~----l~---~~~~~~-----------~~ki~vi~~gv~~~~~~~~~~-------------- 226 (407)
T cd04946 179 YLLSSLDAVFPCSEQGRNY----LQ---KRYPAY-----------KEKIKVSYLGVSDPGIISKPS-------------- 226 (407)
T ss_pred HHHhcCCEEEECCHHHHHH----HH---HHCCCc-----------cccEEEEECCcccccccCCCC--------------
Confidence 3456789999999987443 11 011111 113478999999876654311
Q ss_pred hCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccc
Q 004942 437 MGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSN 516 (722)
Q Consensus 437 lgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~ 516 (722)
.++++.|+++|++.+.||++.+++|+..+.++.|+
T Consensus 227 ---~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~------------------------------------------ 261 (407)
T cd04946 227 ---KDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPS------------------------------------------ 261 (407)
T ss_pred ---CCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCC------------------------------------------
Confidence 24578899999999999999999999999887654
Q ss_pred cccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHH
Q 004942 517 ELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILE 596 (722)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~ 596 (722)
.+++++++|+|++.+.++.++...
T Consensus 262 -----------------------------------------~~l~~~iiG~g~~~~~l~~~~~~~--------------- 285 (407)
T cd04946 262 -----------------------------------------IKIKWTHIGGGPLEDTLKELAESK--------------- 285 (407)
T ss_pred -----------------------------------------ceEEEEEEeCchHHHHHHHHHHhc---------------
Confidence 124677899999988888777422
Q ss_pred HHHhcCCCCCcEEeCCch--hhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEE
Q 004942 597 FLSQHSNLSKAMLWTPAT--TRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLL 672 (722)
Q Consensus 597 ~l~~~~~L~~~V~f~G~~--~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlL 672 (722)
++.++|.|+|.+ +++.++|.. +|++++||. .||+|++++||||||+|||+|++||.+|+|.++.+|++
T Consensus 286 ------~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~--~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l 357 (407)
T cd04946 286 ------PENISVNFTGELSNSEVYKLYKENPVDVFVNLSE--SEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLL 357 (407)
T ss_pred ------CCCceEEEecCCChHHHHHHHhhcCCCEEEeCCc--cccccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEE
Confidence 556789999987 578999976 689999997 99999999999999999999999999999999999999
Q ss_pred ECCC-CccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh-hcHHHHHHHHHC
Q 004942 673 HPPG-HPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNG-LAERHSLGRYCN 722 (722)
Q Consensus 673 vp~~-d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~-~~~~~~~~~Y~~ 722 (722)
++++ ++ ++++++|..+++||+.+++|+++|++.+++ |+++...++|.+
T Consensus 358 ~~~~~~~--~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~~ 407 (407)
T cd04946 358 LSKDPTP--NELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFAK 407 (407)
T ss_pred eCCCCCH--HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhcC
Confidence 9875 56 999999999999999999999999999965 999999988864
No 62
>PLN02275 transferase, transferring glycosyl groups
Probab=99.94 E-value=2.7e-24 Score=231.51 Aligned_cols=310 Identities=15% Similarity=0.100 Sum_probs=203.1
Q ss_pred CCCcHHHHHHHHHHHHHhCCC-EEEEEEEcCCCCChhHHHhCCcEEEEcCCcc---------c------h----------
Q 004942 253 SMTGAPLSMMELATELLSCGA-TVSAVVLSKRGGLMPELARRKIKVLEDRGEP---------S------F---------- 306 (722)
Q Consensus 253 s~gGaplsm~eLA~eL~s~G~-~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~---------~------~---------- 306 (722)
...|++..|.+++..|.+.|+ +|++++....+.........||+++..+... . +
T Consensus 13 ~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (371)
T PLN02275 13 GDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQPRLLQRLPRVLYALALLLKVAIQFLMLLW 92 (371)
T ss_pred cCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCCcccccccccchHHHHHHHHHHHHHHHHHH
Confidence 567888888999999999875 7999997665555555556789999886211 1 1
Q ss_pred ---hhhcCccEEEECCchh-hHhHHHHHHhccCCCccEEEEEecchhH--------------hHHH-HHhhhccccEEEE
Q 004942 307 ---KTSMKADLVIAGSAVC-ATWIDQYITRFPAGGSQVVWWIMENRRE--------------YFDR-AKLVLDRVKLLVF 367 (722)
Q Consensus 307 ---~~~~k~DlVia~Sav~-~~wi~~~i~~~~~g~~~ivw~I~e~r~~--------------yf~~-~k~~l~rvk~li~ 367 (722)
.+..+||+||+++... ...+...+.....+.+ ++.++|..... .+.. .+....+.+.+++
T Consensus 93 ~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~ 171 (371)
T PLN02275 93 FLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAK-FVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKMADGHLC 171 (371)
T ss_pred HHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCC-EEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhhCCEEEE
Confidence 2357999999976321 1223333333334444 33344432100 1111 1122344788999
Q ss_pred ecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEE
Q 004942 368 LSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVL 447 (722)
Q Consensus 368 lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl 447 (722)
+|+...+. ... ..+. + +.+|||+. .+.|.+....+ .+. .++..+++
T Consensus 172 ~S~~~~~~----l~~---~~g~---------~-----i~vi~n~~-~~~f~~~~~~~-----------~~~-~~~~~~i~ 217 (371)
T PLN02275 172 VTKAMQHE----LDQ---NWGI---------R-----ATVLYDQP-PEFFRPASLEI-----------RLR-PNRPALVV 217 (371)
T ss_pred CCHHHHHH----HHH---hcCC---------C-----eEEECCCC-HHHcCcCCchh-----------ccc-CCCcEEEE
Confidence 99886432 100 0111 1 37899984 45565433210 011 13456788
Q ss_pred EEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhc
Q 004942 448 SLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQ 527 (722)
Q Consensus 448 ~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~ 527 (722)
++|++.+.||++.+++|+..+..+.... .++ . .+.
T Consensus 218 ~~grl~~~k~~~~li~a~~~l~~~~~~~--~~~-------------------~--~~~---------------------- 252 (371)
T PLN02275 218 SSTSWTPDEDFGILLEAAVMYDRRVAAR--LNE-------------------S--DSA---------------------- 252 (371)
T ss_pred EeCceeccCCHHHHHHHHHHHHhhhhhc--ccc-------------------c--ccc----------------------
Confidence 9999999999999999999885432110 000 0 000
Q ss_pred cCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCc
Q 004942 528 LNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKA 607 (722)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~ 607 (722)
. + . -.....++|+++|+|+++++++.++... ++++
T Consensus 253 ----------------~-~----~--~~~~~~i~l~ivG~G~~~~~l~~~~~~~---------------------~l~~- 287 (371)
T PLN02275 253 ----------------S-G----K--QSLYPRLLFIITGKGPQKAMYEEKISRL---------------------NLRH- 287 (371)
T ss_pred ----------------c-c----c--cccCCCeEEEEEeCCCCHHHHHHHHHHc---------------------CCCc-
Confidence 0 0 0 0011237899999999999888877543 6765
Q ss_pred EEeCC-c--hhhHHHHHHHcCEEEEcCC-CCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHH
Q 004942 608 MLWTP-A--TTRVASLYSAADVYVINSQ-GLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVL 683 (722)
Q Consensus 608 V~f~G-~--~~dv~~lysaADv~V~pS~-~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~L 683 (722)
+.|.+ . .++++.+|++||++|+++. ...|++|++++||||||+|||+++.||.+|+|+++.+|++++ ++ ++|
T Consensus 288 v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~--~~--~~l 363 (371)
T PLN02275 288 VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS--SS--SEL 363 (371)
T ss_pred eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEEC--CH--HHH
Confidence 66654 3 5899999999999998632 125899999999999999999999999999999999999997 45 999
Q ss_pred HHHHHHhh
Q 004942 684 AQNLRYLL 691 (722)
Q Consensus 684 A~aI~~LL 691 (722)
|++|.+|+
T Consensus 364 a~~i~~l~ 371 (371)
T PLN02275 364 ADQLLELL 371 (371)
T ss_pred HHHHHHhC
Confidence 99998875
No 63
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.93 E-value=4e-25 Score=235.16 Aligned_cols=302 Identities=19% Similarity=0.252 Sum_probs=214.3
Q ss_pred EEEEEeCCC--CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-----------------
Q 004942 244 KFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP----------------- 304 (722)
Q Consensus 244 killI~hel--s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~----------------- 304 (722)
+|+++.+-+ ++||.+-+.+.|++.|.+.||.|.+++...+.-..-.....|++|+..+...
T Consensus 2 ~i~mVsdff~P~~ggveshiy~lSq~li~lghkVvvithayg~r~girylt~glkVyylp~~v~~n~tT~ptv~~~~Pll 81 (426)
T KOG1111|consen 2 RILMVSDFFYPSTGGVESHIYALSQCLIRLGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVGYNQTTFPTVFSDFPLL 81 (426)
T ss_pred cceeeCcccccCCCChhhhHHHhhcchhhcCCeEEEEeccccCccceeeecCCceEEEEeeeeeecccchhhhhccCccc
Confidence 455665555 8999999999999999999999999997765433333345678888776544
Q ss_pred -chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHHHHH--------hhhccccEEEEecHHhHHH
Q 004942 305 -SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAK--------LVLDRVKLLVFLSESQTKQ 375 (722)
Q Consensus 305 -~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~~k--------~~l~rvk~li~lS~~~~~~ 375 (722)
.+..+.++.+||.||+..+.-.+..+.....| -+++..-|... .+.+... ..+..++.+|++|+..
T Consensus 82 r~i~lrE~I~ivhghs~fS~lahe~l~hartMG-lktVfTdHSlf-Gfad~~si~~n~ll~~sL~~id~~IcVshts--- 156 (426)
T KOG1111|consen 82 RPILLRERIEIVHGHSPFSYLAHEALMHARTMG-LKTVFTDHSLF-GFADIGSILTNKLLPLSLANIDRIICVSHTS--- 156 (426)
T ss_pred chhhhhhceEEEecCChHHHHHHHHHHHHHhcC-ceEEEeccccc-cccchhhhhhcceeeeeecCCCcEEEEeecC---
Confidence 11226699999999865433333333333333 44555443310 0011111 1122255566666552
Q ss_pred HhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCC-EEEEEEecCCC
Q 004942 376 WLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQD-MLVLSLSSINP 454 (722)
Q Consensus 376 ~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~-~lIl~vGri~~ 454 (722)
++ +.-++..- ..+.+.+|||.+++..|.|...+ + +..+ ..|+.+||+.+
T Consensus 157 -----ke-ntvlr~~L---------~p~kvsvIPnAv~~~~f~P~~~~-~--------------~S~~i~~ivv~sRLvy 206 (426)
T KOG1111|consen 157 -----KE-NTVLRGAL---------APAKVSVIPNAVVTHTFTPDAAD-K--------------PSADIITIVVASRLVY 206 (426)
T ss_pred -----CC-ceEEEecc---------CHhHeeeccceeeccccccCccc-c--------------CCCCeeEEEEEeeeee
Confidence 11 11122211 12356999999999999996642 1 3444 78999999999
Q ss_pred CCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccc
Q 004942 455 GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRK 534 (722)
Q Consensus 455 ~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (722)
+||+|+|++.+..+.++.|+
T Consensus 207 rKGiDll~~iIp~vc~~~p~------------------------------------------------------------ 226 (426)
T KOG1111|consen 207 RKGIDLLLEIIPSVCDKHPE------------------------------------------------------------ 226 (426)
T ss_pred ccchHHHHHHHHHHHhcCCC------------------------------------------------------------
Confidence 99999999999999988887
Q ss_pred cCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch
Q 004942 535 NLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT 614 (722)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~ 614 (722)
++++++||||++..+++..+.. .+.++|.++|++
T Consensus 227 -------------------------vrfii~GDGPk~i~lee~lEk~---------------------~l~~rV~~lG~v 260 (426)
T KOG1111|consen 227 -------------------------VRFIIIGDGPKRIDLEEMLEKL---------------------FLQDRVVMLGTV 260 (426)
T ss_pred -------------------------eeEEEecCCcccchHHHHHHHh---------------------hccCceEEeccc
Confidence 5688999999998888776433 788999999976
Q ss_pred --hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhc
Q 004942 615 --TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (722)
Q Consensus 615 --~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~ 692 (722)
+++.+.|.+.|+|+.||. .|+|+++++|||+||+|||+|.+||.+|++.++ +.-.+.++++++++++++.+.
T Consensus 261 ~h~~Vr~vl~~G~IFlntSl--TEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d----~i~~~~~~~~dl~~~v~~ai~ 334 (426)
T KOG1111|consen 261 PHDRVRDVLVRGDIFLNTSL--TEAFCMVIVEAASCGLPVVSTRVGGIPEVLPED----MITLGEPGPDDLVGAVEKAIT 334 (426)
T ss_pred chHHHHHHHhcCcEEeccHH--HHHHHHHHHHHHhCCCEEEEeecCCccccCCcc----ceeccCCChHHHHHHHHHHHH
Confidence 789999999999999995 999999999999999999999999999999864 222223333777777777654
No 64
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.93 E-value=9.4e-24 Score=241.61 Aligned_cols=321 Identities=16% Similarity=0.119 Sum_probs=221.1
Q ss_pred ccEEEEEeCCC--CCCcHHHHHHHHHHHHHhC-CCEEEEEEEcCC---C------C------------ChhHH-HhCCcE
Q 004942 242 SRKFILIFHEL--SMTGAPLSMMELATELLSC-GATVSAVVLSKR---G------G------------LMPEL-ARRKIK 296 (722)
Q Consensus 242 ~kkillI~hel--s~gGaplsm~eLA~eL~s~-G~~VsvV~ls~~---g------~------------l~~el-~~~gI~ 296 (722)
++.|.+++.-. =|||..+.=+==|-.|.+. |++|++|++--. + . +...+ .+.|.+
T Consensus 322 ~r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~ 401 (794)
T PLN02501 322 KRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFK 401 (794)
T ss_pred CCeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCC
Confidence 36777776654 5788776633345577776 899999985311 1 0 11223 233332
Q ss_pred ------EEEcCCcc------------chhhhcCccEEEECCchhhHhH--HHHHHhccCCCccEEEEEecchhHhHHHHH
Q 004942 297 ------VLEDRGEP------------SFKTSMKADLVIAGSAVCATWI--DQYITRFPAGGSQVVWWIMENRREYFDRAK 356 (722)
Q Consensus 297 ------Vl~~~~~~------------~~~~~~k~DlVia~Sav~~~wi--~~~i~~~~~g~~~ivw~I~e~r~~yf~~~k 356 (722)
++.-+... +....++||+||+.+-..-.|. ....+.... + ++-.+|.+..+|+...+
T Consensus 402 ~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~--P-VVasyHTny~eYl~~y~ 478 (794)
T PLN02501 402 ADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN--H-VVGVVHTNYLEYIKREK 478 (794)
T ss_pred CCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcC--C-eEEEEeCCcHHHHhHhc
Confidence 22211111 3344889999999986666666 333343333 3 77788988888887543
Q ss_pred hh-------------hcc--ccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeec--CCCCCCCCCc
Q 004942 357 LV-------------LDR--VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFT--CSLNTPTSSP 419 (722)
Q Consensus 357 ~~-------------l~r--vk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIp--ngid~~~f~~ 419 (722)
.. +.+ ++.++..|... ..+. . .+|+ +|||+..|.|
T Consensus 479 ~g~L~~~llk~l~~~v~r~hcD~VIaPS~at---------------------q~L~--~-----~vI~nVnGVDte~F~P 530 (794)
T PLN02501 479 NGALQAFFVKHINNWVTRAYCHKVLRLSAAT---------------------QDLP--K-----SVICNVHGVNPKFLKI 530 (794)
T ss_pred chhHHHHHHHHHHHHHHHhhCCEEEcCCHHH---------------------HHhc--c-----cceeecccccccccCC
Confidence 11 001 13333333221 0010 0 2333 5999999988
Q ss_pred hhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccc
Q 004942 420 EKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHL 499 (722)
Q Consensus 420 ~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 499 (722)
..... -+.++|+......++|+||+.+.||++.||+|++.+.++.++
T Consensus 531 ~~r~~--------~~r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~~~pn------------------------- 577 (794)
T PLN02501 531 GEKVA--------EERELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNELDG------------------------- 577 (794)
T ss_pred cchhH--------HHHhcCCccccCceEEEEcccccCCHHHHHHHHHHHHhhCCC-------------------------
Confidence 75421 124667765555689999999999999999999998765443
Q ss_pred cccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhh
Q 004942 500 RGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIG 579 (722)
Q Consensus 500 ~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~ 579 (722)
.+|+++|+|++++.++.++.
T Consensus 578 ------------------------------------------------------------vrLvIVGDGP~reeLe~la~ 597 (794)
T PLN02501 578 ------------------------------------------------------------FNLDVFGNGEDAHEVQRAAK 597 (794)
T ss_pred ------------------------------------------------------------eEEEEEcCCccHHHHHHHHH
Confidence 57899999999999988875
Q ss_pred ccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC
Q 004942 580 SVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG 659 (722)
Q Consensus 580 ~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG 659 (722)
.. ++ +|.|+|..+++..+|..+||||+||. .|+||++++||||||+|||+++++|
T Consensus 598 eL---------------------gL--~V~FLG~~dd~~~lyasaDVFVlPS~--sEgFGlVlLEAMA~GlPVVATd~pG 652 (794)
T PLN02501 598 RL---------------------DL--NLNFLKGRDHADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVVCADHPS 652 (794)
T ss_pred Hc---------------------CC--EEEecCCCCCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCCEEEecCCC
Confidence 33 44 48999999889999999999999997 9999999999999999999999998
Q ss_pred hhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 660 TKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 660 ~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
.. ++.++.+|++. +|+ ++++++|.++|.|+..+..++. ...++|+...+++.
T Consensus 653 ~e-~V~~g~nGll~--~D~--EafAeAI~~LLsd~~~rl~~~a-----~~~~SWeAaadrLl 704 (794)
T PLN02501 653 NE-FFRSFPNCLTY--KTS--EDFVAKVKEALANEPQPLTPEQ-----RYNLSWEAATQRFM 704 (794)
T ss_pred Cc-eEeecCCeEec--CCH--HHHHHHHHHHHhCchhhhHHHH-----HhhCCHHHHHHHHH
Confidence 54 47677788764 566 9999999999999886544432 34789999888875
No 65
>PHA01630 putative group 1 glycosyl transferase
Probab=99.92 E-value=2.6e-23 Score=222.92 Aligned_cols=214 Identities=17% Similarity=0.113 Sum_probs=158.7
Q ss_pred hccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhC
Q 004942 359 LDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMG 438 (722)
Q Consensus 359 l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elg 438 (722)
..+++.++++|+...+. . .+.+... . ..+.+||||+|++.|.+....
T Consensus 92 ~~~ad~ii~~S~~~~~~----l----~~~g~~~-------~---~~i~vIpNGVd~~~f~~~~~~--------------- 138 (331)
T PHA01630 92 NQPVDEIVVPSQWSKNA----F----YTSGLKI-------P---QPIYVIPHNLNPRMFEYKPKE--------------- 138 (331)
T ss_pred hccCCEEEECCHHHHHH----H----HHcCCCC-------C---CCEEEECCCCCHHHcCCCccc---------------
Confidence 35688999999987443 1 1111110 1 135899999999888654321
Q ss_pred CCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccc
Q 004942 439 LTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNEL 518 (722)
Q Consensus 439 l~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~ 518 (722)
....++++++|++.+.||++.|++|++.+.++.++
T Consensus 139 -~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~-------------------------------------------- 173 (331)
T PHA01630 139 -KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYD-------------------------------------------- 173 (331)
T ss_pred -cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCC--------------------------------------------
Confidence 12456777888999999999999999999876554
Q ss_pred cccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHH
Q 004942 519 SVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFL 598 (722)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l 598 (722)
.+++++|+|.+...+.
T Consensus 174 -----------------------------------------~~llivG~~~~~~~l~----------------------- 189 (331)
T PHA01630 174 -----------------------------------------FYFLIKSSNMLDPRLF----------------------- 189 (331)
T ss_pred -----------------------------------------EEEEEEeCcccchhhc-----------------------
Confidence 4566777654433211
Q ss_pred HhcCCCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCC--
Q 004942 599 SQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPG-- 676 (722)
Q Consensus 599 ~~~~~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~-- 676 (722)
++.+ +......+++..+|+.||++|+||. .|+||++++||||||+|||+|+.||..|++.++.+|++++.+
T Consensus 190 ----~~~~-~~~~v~~~~l~~~y~~aDv~v~pS~--~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~ 262 (331)
T PHA01630 190 ----GLNG-VKTPLPDDDIYSLFAGCDILFYPVR--GGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRK 262 (331)
T ss_pred ----cccc-eeccCCHHHHHHHHHhCCEEEECCc--cccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeeccc
Confidence 1211 1122234799999999999999998 899999999999999999999999999999999999888643
Q ss_pred ---------------CccHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 677 ---------------HPGAQVLAQNLRYLLKN---PSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 677 ---------------d~~~e~LA~aI~~LL~n---p~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
+++.+++++++..++.| ++.++.++.+++...++|+|+.++++|.
T Consensus 263 ~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~ 325 (331)
T PHA01630 263 PKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWE 325 (331)
T ss_pred ccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 22348899999999987 3556666677777778899999999885
No 66
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.91 E-value=3.1e-22 Score=212.29 Aligned_cols=318 Identities=16% Similarity=0.086 Sum_probs=213.4
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc------------------
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP------------------ 304 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~------------------ 304 (722)
+||+++.. ..||+...+++||++|.+.||+|.+++... +.....+...|++++..+...
T Consensus 2 ~~i~i~~~--g~gG~~~~~~~la~~L~~~g~ev~vv~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (357)
T PRK00726 2 KKILLAGG--GTGGHVFPALALAEELKKRGWEVLYLGTAR-GMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLK 78 (357)
T ss_pred cEEEEEcC--cchHhhhHHHHHHHHHHhCCCEEEEEECCC-chhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHH
Confidence 45666654 347999999999999999999999998533 111222234688887665321
Q ss_pred ------chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHHHHHhhhccccEEEEecHHhHHHHhh
Q 004942 305 ------SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLT 378 (722)
Q Consensus 305 ------~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~~k~~l~rvk~li~lS~~~~~~~~~ 378 (722)
++.++.+||+||+++... .|. ..++....+.+ ++++.+........ +....+.+.+++.++.. .
T Consensus 79 ~~~~~~~~ik~~~pDvv~~~~~~~-~~~-~~~~~~~~~~p-~v~~~~~~~~~~~~--r~~~~~~d~ii~~~~~~--~--- 148 (357)
T PRK00726 79 GVLQARKILKRFKPDVVVGFGGYV-SGP-GGLAARLLGIP-LVIHEQNAVPGLAN--KLLARFAKKVATAFPGA--F--- 148 (357)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcc-hhH-HHHHHHHcCCC-EEEEcCCCCccHHH--HHHHHHhchheECchhh--h---
Confidence 233467899999997433 233 22333333344 44433211111111 11222344555555432 0
Q ss_pred HHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCH
Q 004942 379 WCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQ 458 (722)
Q Consensus 379 ~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~ 458 (722)
. . .+ ...+.+||||++.+.+.+... +++++++++..+|+++|+..+.|++
T Consensus 149 -~-----~---~~----------~~~i~vi~n~v~~~~~~~~~~-----------~~~~~~~~~~~~i~~~gg~~~~~~~ 198 (357)
T PRK00726 149 -P-----E---FF----------KPKAVVTGNPVREEILALAAP-----------PARLAGREGKPTLLVVGGSQGARVL 198 (357)
T ss_pred -h-----c---cC----------CCCEEEECCCCChHhhcccch-----------hhhccCCCCCeEEEEECCcHhHHHH
Confidence 0 0 11 123589999999876654221 2346776677888999998888887
Q ss_pred HHHH-HHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCC
Q 004942 459 LLLV-ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLL 537 (722)
Q Consensus 459 ~~Ll-eA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (722)
..++ +|++++.+. +
T Consensus 199 ~~~l~~a~~~~~~~-~---------------------------------------------------------------- 213 (357)
T PRK00726 199 NEAVPEALALLPEA-L---------------------------------------------------------------- 213 (357)
T ss_pred HHHHHHHHHHhhhC-c----------------------------------------------------------------
Confidence 5555 888777321 1
Q ss_pred CCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhH
Q 004942 538 SPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRV 617 (722)
Q Consensus 538 ~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv 617 (722)
..++++|+|+++ .+...+ + +++. |.|+|+++++
T Consensus 214 ----------------------~~~~~~G~g~~~-~~~~~~---------------------~-~~~~--v~~~g~~~~~ 246 (357)
T PRK00726 214 ----------------------QVIHQTGKGDLE-EVRAAY---------------------A-AGIN--AEVVPFIDDM 246 (357)
T ss_pred ----------------------EEEEEcCCCcHH-HHHHHh---------------------h-cCCc--EEEeehHhhH
Confidence 135678888753 222222 1 2553 9999999999
Q ss_pred HHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC--------hhhhhccCccEEEECCCCccHHHHHHHHHH
Q 004942 618 ASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG--------TKEIVEHNVTGLLHPPGHPGAQVLAQNLRY 689 (722)
Q Consensus 618 ~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG--------~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~ 689 (722)
+++|++||++|.+| + +++++|||+||+|||++..++ ..+.+.+..+|+++++.|.++++|+++|++
T Consensus 247 ~~~~~~~d~~i~~~---g---~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ 320 (357)
T PRK00726 247 AAAYAAADLVICRA---G---ASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLE 320 (357)
T ss_pred HHHHHhCCEEEECC---C---HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHH
Confidence 99999999999866 2 689999999999999987643 236676777899999888444999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 690 LLKNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 690 LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
+++|++.+++|++++++.++++....+++.|.
T Consensus 321 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (357)
T PRK00726 321 LLSDPERLEAMAEAARALGKPDAAERLADLIE 352 (357)
T ss_pred HHcCHHHHHHHHHHHHhcCCcCHHHHHHHHHH
Confidence 99999999999999999998898888888774
No 67
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.90 E-value=7.9e-22 Score=206.90 Aligned_cols=313 Identities=16% Similarity=0.112 Sum_probs=208.3
Q ss_pred eCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc------------------------
Q 004942 249 FHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP------------------------ 304 (722)
Q Consensus 249 ~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~------------------------ 304 (722)
++....||....+.+||++|.+.||+|.+++... +.........|++++..+...
T Consensus 4 ~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (350)
T cd03785 4 IAGGGTGGHIFPALALAEELRERGAEVLFLGTKR-GLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQAR 82 (350)
T ss_pred EEecCchhhhhHHHHHHHHHHhCCCEEEEEECCC-cchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHHHHH
Confidence 4556778888889999999999999999998543 222222233577776554320
Q ss_pred chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHHHHHhhhccccEEEEecHHhHHHHhhHHHhhh
Q 004942 305 SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEK 384 (722)
Q Consensus 305 ~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~ 384 (722)
++.++.+||+||+++... .+. ..++....+.+.+ .+.+........ +......+.+++.++...+
T Consensus 83 ~~i~~~~pDvI~~~~~~~-~~~-~~~~a~~~~~p~v-~~~~~~~~~~~~--~~~~~~~~~vi~~s~~~~~---------- 147 (350)
T cd03785 83 KILKKFKPDVVVGFGGYV-SGP-VGLAAKLLGIPLV-IHEQNAVPGLAN--RLLARFADRVALSFPETAK---------- 147 (350)
T ss_pred HHHHhcCCCEEEECCCCc-chH-HHHHHHHhCCCEE-EEcCCCCccHHH--HHHHHhhCEEEEcchhhhh----------
Confidence 223477999999886432 222 2233333344423 222111111111 1112235667777766411
Q ss_pred hhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHH-HHHH
Q 004942 385 LKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQL-LLVE 463 (722)
Q Consensus 385 i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~-~Lle 463 (722)
. . + ...+.+|+||+|.+.+.+.. . ++++++++++.+|+++|+....|+.. .+++
T Consensus 148 --~-~-~----------~~~~~~i~n~v~~~~~~~~~----------~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~ 202 (350)
T cd03785 148 --Y-F-P----------KDKAVVTGNPVREEILALDR----------E-RARLGLRPGKPTLLVFGGSQGARAINEAVPE 202 (350)
T ss_pred --c-C-C----------CCcEEEECCCCchHHhhhhh----------h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHH
Confidence 1 1 1 11347899999977664321 1 67788888888888888777777765 4558
Q ss_pred HHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCccc
Q 004942 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (722)
Q Consensus 464 A~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (722)
+++.+.+ ++
T Consensus 203 a~~~l~~--~~--------------------------------------------------------------------- 211 (350)
T cd03785 203 ALAELLR--KR--------------------------------------------------------------------- 211 (350)
T ss_pred HHHHhhc--cC---------------------------------------------------------------------
Confidence 8877742 11
Q ss_pred ccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHH
Q 004942 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSA 623 (722)
Q Consensus 544 ~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysa 623 (722)
...++++|+| +.+.++..+. .+.++|.|.|.++++.++|+.
T Consensus 212 ---------------~~~~~i~G~g-~~~~l~~~~~-----------------------~~~~~v~~~g~~~~~~~~l~~ 252 (350)
T cd03785 212 ---------------LQVIHQTGKG-DLEEVKKAYE-----------------------ELGVNYEVFPFIDDMAAAYAA 252 (350)
T ss_pred ---------------eEEEEEcCCc-cHHHHHHHHh-----------------------ccCCCeEEeehhhhHHHHHHh
Confidence 0124567888 4455665542 113689999999999999999
Q ss_pred cCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC--------hhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHH
Q 004942 624 ADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG--------TKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPS 695 (722)
Q Consensus 624 ADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG--------~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~ 695 (722)
||++|.+| + +++++|||++|+|||+++.++ ..+.+.+..+|+++++++.++++|+++|..+++|++
T Consensus 253 ad~~v~~s---g---~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~ 326 (350)
T cd03785 253 ADLVISRA---G---ASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPE 326 (350)
T ss_pred cCEEEECC---C---HhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHH
Confidence 99999766 2 588999999999999987654 245666667999999873233999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHH
Q 004942 696 VRERMAMEGRKKSNGLAERHSLG 718 (722)
Q Consensus 696 ~r~~mg~~grk~ve~~~~~~~~~ 718 (722)
.+++|+.++++.++++..+.+++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~i~~ 349 (350)
T cd03785 327 RLKAMAEAARSLARPDAAERIAD 349 (350)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHh
Confidence 99999999999988777766653
No 68
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.90 E-value=6.1e-23 Score=194.78 Aligned_cols=168 Identities=31% Similarity=0.601 Sum_probs=147.1
Q ss_pred HHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHh-CCCCcchhhhhccccccccCccccccccccccccccc
Q 004942 430 RDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQ-EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMS 508 (722)
Q Consensus 430 r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~ 508 (722)
|+..|...+..+++.+|+++|++.+.||++.+++++..+.++ .+.
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~---------------------------------- 47 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPN---------------------------------- 47 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTT----------------------------------
T ss_pred hHHHHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCC----------------------------------
Confidence 477888999999999999999999999999999999999764 333
Q ss_pred ccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCc
Q 004942 509 DDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKV 588 (722)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~ 588 (722)
.+++++|+++....++.++..
T Consensus 48 ---------------------------------------------------~~l~i~G~~~~~~~~~~~~~~-------- 68 (172)
T PF00534_consen 48 ---------------------------------------------------YKLVIVGDGEYKKELKNLIEK-------- 68 (172)
T ss_dssp ---------------------------------------------------EEEEEESHCCHHHHHHHHHHH--------
T ss_pred ---------------------------------------------------eEEEEEccccccccccccccc--------
Confidence 567888877766666666543
Q ss_pred hhHHHHHHHHHhcCCCCCcEEeCCchh--hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc
Q 004942 589 PYVKEILEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH 666 (722)
Q Consensus 589 ~Y~~el~~~l~~~~~L~~~V~f~G~~~--dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~ 666 (722)
+++.++|.|+|... ++..+|..||++|+||. .|+||++++|||+||+|||+++.|+..|++.+
T Consensus 69 -------------~~~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~--~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~ 133 (172)
T PF00534_consen 69 -------------LNLKENIIFLGYVPDDELDELYKSSDIFVSPSR--NEGFGLSLLEAMACGCPVIASDIGGNNEIIND 133 (172)
T ss_dssp -------------TTCGTTEEEEESHSHHHHHHHHHHTSEEEE-BS--SBSS-HHHHHHHHTT-EEEEESSTHHHHHSGT
T ss_pred -------------ccccccccccccccccccccccccceecccccc--ccccccccccccccccceeeccccCCceeecc
Confidence 37888999999885 89999999999999998 79999999999999999999999999999999
Q ss_pred CccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 004942 667 NVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKK 707 (722)
Q Consensus 667 g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ 707 (722)
+.+|+++++.++ ++++++|.++++|++.++.|+++++++
T Consensus 134 ~~~g~~~~~~~~--~~l~~~i~~~l~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 134 GVNGFLFDPNDI--EELADAIEKLLNDPELRQKLGKNARER 172 (172)
T ss_dssp TTSEEEESTTSH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEeCCCCH--HHHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 999999999988 999999999999999999999999874
No 69
>PHA01633 putative glycosyl transferase group 1
Probab=99.90 E-value=2.4e-22 Score=216.47 Aligned_cols=223 Identities=13% Similarity=0.139 Sum_probs=164.8
Q ss_pred hhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHh
Q 004942 358 VLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEM 437 (722)
Q Consensus 358 ~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~el 437 (722)
++.+-..+|.+|+...+. . .+.+... . ..|++|+|++.|.+... ....+|+++
T Consensus 89 ~m~~~~~vIavS~~t~~~----L----~~~G~~~---------~----i~I~~GVD~~~f~p~~~------~~~~~r~~~ 141 (335)
T PHA01633 89 YLLQDVKFIPNSKFSAEN----L----QEVGLQV---------D----LPVFHGINFKIVENAEK------LVPQLKQKL 141 (335)
T ss_pred HHhcCCEEEeCCHHHHHH----H----HHhCCCC---------c----eeeeCCCChhhcCccch------hhHHHHHHh
Confidence 344444678999887443 1 1223322 1 24778999999987542 113456666
Q ss_pred CCC-CCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccc
Q 004942 438 GLT-DQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSN 516 (722)
Q Consensus 438 gl~-~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~ 516 (722)
+.. ++.++|+++||+.+.||++.|++|++.+.++.++.
T Consensus 142 ~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~----------------------------------------- 180 (335)
T PHA01633 142 DKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDI----------------------------------------- 180 (335)
T ss_pred CcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCc-----------------------------------------
Confidence 653 46678999999999999999999999998766541
Q ss_pred cccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHH
Q 004942 517 ELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILE 596 (722)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~ 596 (722)
..+.+++++|++. +
T Consensus 181 ----------------------------------------~~~i~l~ivG~~~----~---------------------- 194 (335)
T PHA01633 181 ----------------------------------------AKKIHFFVISHKQ----F---------------------- 194 (335)
T ss_pred ----------------------------------------cccEEEEEEcHHH----H----------------------
Confidence 0113455565321 1
Q ss_pred HHHhcCCCCCcEEeCC---c--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc-----
Q 004942 597 FLSQHSNLSKAMLWTP---A--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH----- 666 (722)
Q Consensus 597 ~l~~~~~L~~~V~f~G---~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~----- 666 (722)
+.++++++|.|+| . .+++.++|++||++|+||. .|+||++++||||||+|||++++||++|++.+
T Consensus 195 ---~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~--~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~L 269 (335)
T PHA01633 195 ---TQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSG--TEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLL 269 (335)
T ss_pred ---HHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCc--cccCCHHHHHHHHcCCCEEEccCCCceeecCCcccee
Confidence 1126778899985 3 4789999999999999997 89999999999999999999999999997552
Q ss_pred -------------CccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHHC
Q 004942 667 -------------NVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYCN 722 (722)
Q Consensus 667 -------------g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~~ 722 (722)
+.+|++++..|+ ++||++|..+++..+ ++.+++++++.+++|+|+..+++|.+
T Consensus 270 i~~~~v~~~~~~~~g~g~~~~~~d~--~~la~ai~~~~~~~~-~~~~~~~~~~~a~~f~~~~~~~~~~~ 335 (335)
T PHA01633 270 IKSSKVEEYYDKEHGQKWKIHKFQI--EDMANAIILAFELQD-REERSMKLKELAKKYDIRNLYTRFLE 335 (335)
T ss_pred eCCCCHHHhcCcccCceeeecCCCH--HHHHHHHHHHHhccC-hhhhhHHHHHHHHhcCHHHHHHHhhC
Confidence 235777887787 999999999965432 33447788999999999999999975
No 70
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.90 E-value=2.8e-21 Score=210.81 Aligned_cols=335 Identities=18% Similarity=0.206 Sum_probs=215.3
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHhCCCEEEE--EEEcCCCC-ChhHHHhCCcEEEEcCCcc-----chhhhcCccEEEEC
Q 004942 247 LIFHELSMTGAPLSMMELATELLSCGATVSA--VVLSKRGG-LMPELARRKIKVLEDRGEP-----SFKTSMKADLVIAG 318 (722)
Q Consensus 247 lI~hels~gGaplsm~eLA~eL~s~G~~Vsv--V~ls~~g~-l~~el~~~gI~Vl~~~~~~-----~~~~~~k~DlVia~ 318 (722)
+-+|..|.| --.++..|+++|.+++.++.+ .+....+. ........++.+...+.+. ++.+..+||+||++
T Consensus 53 iW~Ha~s~G-e~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~~ 131 (425)
T PRK05749 53 IWFHAVSVG-ETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVIIM 131 (425)
T ss_pred EEEEeCCHH-HHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEEE
Confidence 446877777 556699999999998765443 33222221 1112223357777766665 56678999999876
Q ss_pred CchhhHhHHHHHHhccCCCccEEEEEecchh---H--hHH-HHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCc
Q 004942 319 SAVCATWIDQYITRFPAGGSQVVWWIMENRR---E--YFD-RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPA 392 (722)
Q Consensus 319 Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~---~--yf~-~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~ 392 (722)
.. ..|...+......+.+-+++......+ . ++. ..+..+.+++.++..|+...+. . .+++..+
T Consensus 132 ~~--~~~~~~l~~~~~~~ip~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~----l----~~~g~~~- 200 (425)
T PRK05749 132 ET--ELWPNLIAELKRRGIPLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAER----F----LALGAKN- 200 (425)
T ss_pred ec--chhHHHHHHHHHCCCCEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEECCHHHHHH----H----HHcCCCC-
Confidence 33 235433223233444534432211001 1 111 1234556688999999987443 1 1222211
Q ss_pred ccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhC
Q 004942 393 VVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQE 472 (722)
Q Consensus 393 vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~ 472 (722)
. +.+++|. +.+.+.+..... .+..+|++++ .+..+++++|+. .|+.+.+++|++.+.++.
T Consensus 201 ----------~-i~vi~n~-~~d~~~~~~~~~----~~~~~r~~~~--~~~~vil~~~~~--~~~~~~ll~A~~~l~~~~ 260 (425)
T PRK05749 201 ----------E-VTVTGNL-KFDIEVPPELAA----RAATLRRQLA--PNRPVWIAASTH--EGEEELVLDAHRALLKQF 260 (425)
T ss_pred ----------C-cEecccc-cccCCCChhhHH----HHHHHHHHhc--CCCcEEEEeCCC--chHHHHHHHHHHHHHHhC
Confidence 1 3567773 333332221111 1245677777 345677787764 688999999999987665
Q ss_pred CCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccc
Q 004942 473 PSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVS 552 (722)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (722)
++
T Consensus 261 ~~------------------------------------------------------------------------------ 262 (425)
T PRK05749 261 PN------------------------------------------------------------------------------ 262 (425)
T ss_pred CC------------------------------------------------------------------------------
Confidence 54
Q ss_pred cCCcccceeEEEcCCchhH-HHHHHhhhccCCCCCCchhHHHHHHHHHh-cCCCCCcEEeCCchhhHHHHHHHcCEEEE-
Q 004942 553 FGSGHLRRKVLSKSDGKQQ-QALKILIGSVGSKSNKVPYVKEILEFLSQ-HSNLSKAMLWTPATTRVASLYSAADVYVI- 629 (722)
Q Consensus 553 ~g~~~~~~~lli~G~G~~~-~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~-~~~L~~~V~f~G~~~dv~~lysaADv~V~- 629 (722)
.+|+++|+|+++ ++++.++...|-.. .. +... ...-...|.+.+...++..+|+.||++++
T Consensus 263 -------~~liivG~g~~r~~~l~~~~~~~gl~~--~~-------~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~ 326 (425)
T PRK05749 263 -------LLLILVPRHPERFKEVEELLKKAGLSY--VR-------RSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVG 326 (425)
T ss_pred -------cEEEEcCCChhhHHHHHHHHHhCCCcE--EE-------ccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEEC
Confidence 568899999987 78888776554210 00 0000 00012357777777899999999999666
Q ss_pred cCCCCCCCccHHHHHHHHhCCCEEEcCC-CChhhhhccC-ccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 004942 630 NSQGLGETFGRVTIEAMAFGVPVLGTDA-GGTKEIVEHN-VTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKK 707 (722)
Q Consensus 630 pS~~l~EgfglviLEAMA~GlPVVaTd~-GG~~EIVe~g-~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ 707 (722)
+|. .|++|.+++||||||+|||+++. ++..|+++.. .+|++++++|+ ++|+++|..+++||+.+++|+++|++.
T Consensus 327 ~S~--~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~--~~La~~l~~ll~~~~~~~~m~~~a~~~ 402 (425)
T PRK05749 327 GSL--VKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVEDA--EDLAKAVTYLLTDPDARQAYGEAGVAF 402 (425)
T ss_pred CCc--CCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEECCH--HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 564 79999999999999999999875 6777776652 46888888888 999999999999999999999999999
Q ss_pred HHhh
Q 004942 708 SNGL 711 (722)
Q Consensus 708 ve~~ 711 (722)
+++.
T Consensus 403 ~~~~ 406 (425)
T PRK05749 403 LKQN 406 (425)
T ss_pred HHhC
Confidence 9653
No 71
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.89 E-value=7.9e-22 Score=219.82 Aligned_cols=302 Identities=15% Similarity=0.137 Sum_probs=197.1
Q ss_pred CccEEEECCchhhHhHHHHHHhccCCCccEEEEEecch--hHhHHH------HHhhhccccEEEEecHHhHHHHhhHHHh
Q 004942 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR--REYFDR------AKLVLDRVKLLVFLSESQTKQWLTWCEE 382 (722)
Q Consensus 311 k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r--~~yf~~------~k~~l~rvk~li~lS~~~~~~~~~~~~~ 382 (722)
..|+|+.|.-+ -.-+.+++...... ..+.|+.|-+. .+.|.. .-..+-..+.+.|.+....+.....|..
T Consensus 131 ~~d~iwihDyh-l~llp~~lr~~~~~-~~i~~f~HipfP~~e~~~~lp~~~~ll~~~l~~D~igF~t~~~~~~Fl~~~~~ 208 (460)
T cd03788 131 PGDLVWVHDYH-LLLLPQMLRERGPD-ARIGFFLHIPFPSSEIFRCLPWREELLRGLLGADLIGFQTERYARNFLSCCSR 208 (460)
T ss_pred CCCEEEEeChh-hhHHHHHHHhhCCC-CeEEEEEeCCCCChHHHhhCCChHHHHHHHhcCCEEEECCHHHHHHHHHHHHH
Confidence 46888776432 11222344322222 34777776322 233321 0111223777888887655555666632
Q ss_pred hhhhccCCCcc-cccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHH
Q 004942 383 EKLKLRSQPAV-VPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLL 461 (722)
Q Consensus 383 ~~i~l~~~~~v-v~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~L 461 (722)
. ++..... .-+........+.+||+|+|++.|.+....+. .++.+++..+...++++|+++||+.+.||++.+
T Consensus 209 ~---l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~---~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~l 282 (460)
T cd03788 209 L---LGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPE---VQERAAELRERLGGRKLIVGVDRLDYSKGIPER 282 (460)
T ss_pred H---cCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCch---hHHHHHHHHHhcCCCEEEEEecCccccCCHHHH
Confidence 1 1111100 00111122235789999999988865432111 223344445556678899999999999999999
Q ss_pred HHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCc
Q 004942 462 VESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSL 541 (722)
Q Consensus 462 leA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (722)
++|++.+.++.|+.
T Consensus 283 l~A~~~ll~~~p~~------------------------------------------------------------------ 296 (460)
T cd03788 283 LLAFERLLERYPEW------------------------------------------------------------------ 296 (460)
T ss_pred HHHHHHHHHhChhh------------------------------------------------------------------
Confidence 99999998876651
Q ss_pred ccccCCCCccccCCcccceeEEEcC-----CchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCC---CCCcEEeCCc
Q 004942 542 FTSIGNTDAVSFGSGHLRRKVLSKS-----DGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSN---LSKAMLWTPA 613 (722)
Q Consensus 542 ~~~~~~~~~~~~g~~~~~~~lli~G-----~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~---L~~~V~f~G~ 613 (722)
..+++|+++| +|++.+.++..+. ++...+....+ ....+.+.|.
T Consensus 297 ---------------~~~v~Lv~vg~~~~g~~~~~~~l~~~l~-------------~~v~~in~~~g~~~~~~v~~~~g~ 348 (460)
T cd03788 297 ---------------RGKVVLVQIAVPSRTDVPEYQELRREVE-------------ELVGRINGKFGTLDWTPVRYLYRS 348 (460)
T ss_pred ---------------cCCEEEEEEccCCCcCcHHHHHHHHHHH-------------HHHHHHHhccCCCCceeEEEEeCC
Confidence 0124455554 4455544444432 11112211112 2233445564
Q ss_pred --hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCC----EEEcCCCChhhhhccCccEEEECCCCccHHHHHHHH
Q 004942 614 --TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP----VLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNL 687 (722)
Q Consensus 614 --~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlP----VVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI 687 (722)
.+++..+|++||++|+||. .||||++++||||||+| ||+|+.+|..+. +.+|+++++.|+ +++|++|
T Consensus 349 v~~~el~~~y~~aDv~v~pS~--~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d~--~~la~ai 421 (460)
T cd03788 349 LPREELAALYRAADVALVTPL--RDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYDI--DEVADAI 421 (460)
T ss_pred CCHHHHHHHHHhccEEEeCcc--ccccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCCH--HHHHHHH
Confidence 5899999999999999997 99999999999999999 999998888887 357999999998 9999999
Q ss_pred HHhhcCH-HHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 688 RYLLKNP-SVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 688 ~~LL~np-~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
..+++++ +++++++.++++.+++|++..++++|.
T Consensus 422 ~~~l~~~~~e~~~~~~~~~~~v~~~~~~~w~~~~l 456 (460)
T cd03788 422 HRALTMPLEERRERHRKLREYVRTHDVQAWANSFL 456 (460)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999855 788999999999999999999999875
No 72
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.89 E-value=5.6e-21 Score=200.32 Aligned_cols=311 Identities=18% Similarity=0.119 Sum_probs=201.0
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHH-HhCCcEEEEcCCcc------------------
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL-ARRKIKVLEDRGEP------------------ 304 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el-~~~gI~Vl~~~~~~------------------ 304 (722)
||+++.-+. +|.-....+||++|.+.||+|++++. +.+...++ ...|+++...+...
T Consensus 2 ~i~~~~g~~--~g~~~~~~~La~~L~~~g~eV~vv~~--~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 77 (348)
T TIGR01133 2 KVVLAAGGT--GGHIFPALAVAEELIKRGVEVLWLGT--KRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLK 77 (348)
T ss_pred eEEEEeCcc--HHHHhHHHHHHHHHHhCCCEEEEEeC--CCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHH
Confidence 555554332 34444567999999999999999983 22322233 34688887654321
Q ss_pred ------chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHHHH-HhhhccccEEEEecHHhHHHHh
Q 004942 305 ------SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRA-KLVLDRVKLLVFLSESQTKQWL 377 (722)
Q Consensus 305 ------~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~~-k~~l~rvk~li~lS~~~~~~~~ 377 (722)
++.++.+||+||+++... .+. ..++....+.+ ++. ++. ..+.... +.....++.++.+++...+.
T Consensus 78 ~~~~l~~~i~~~~pDvVi~~~~~~-~~~-~~~~~~~~~~p-~v~--~~~-~~~~~~~~~~~~~~~d~ii~~~~~~~~~-- 149 (348)
T TIGR01133 78 AVFQARRILKKFKPDAVIGFGGYV-SGP-AGLAAKLLGIP-LFH--HEQ-NAVPGLTNKLLSRFAKKVLISFPGAKDH-- 149 (348)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcc-cHH-HHHHHHHcCCC-EEE--ECC-CCCccHHHHHHHHHhCeeEECchhHhhc--
Confidence 233477999999986432 222 22222333334 222 111 1111111 11223466677776653111
Q ss_pred hHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCC
Q 004942 378 TWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKG 457 (722)
Q Consensus 378 ~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg 457 (722)
. ...+|+|+++...+.+... +++++++++.++|+++|+....|+
T Consensus 150 -----------~--------------~~~~i~n~v~~~~~~~~~~-----------~~~~~~~~~~~~i~~~gg~~~~~~ 193 (348)
T TIGR01133 150 -----------F--------------EAVLVGNPVRQEIRSLPVP-----------RERFGLREGKPTILVLGGSQGAKI 193 (348)
T ss_pred -----------C--------------CceEEcCCcCHHHhcccch-----------hhhcCCCCCCeEEEEECCchhHHH
Confidence 0 0158899998665533211 235788888889999998777888
Q ss_pred HHH-HHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccC
Q 004942 458 QLL-LVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNL 536 (722)
Q Consensus 458 ~~~-LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (722)
+.. ++++++.+.+....
T Consensus 194 ~~~~l~~a~~~l~~~~~~-------------------------------------------------------------- 211 (348)
T TIGR01133 194 LNELVPKALAKLAEKGIQ-------------------------------------------------------------- 211 (348)
T ss_pred HHHHHHHHHHHHhhcCcE--------------------------------------------------------------
Confidence 654 55788777432111
Q ss_pred CCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhh
Q 004942 537 LSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTR 616 (722)
Q Consensus 537 ~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~d 616 (722)
+ +++.|+|+. +.++..+. .+++.+.+.|. .. +
T Consensus 212 -----------------------~-~~~~g~~~~-~~l~~~~~---------------------~~~l~~~v~~~-~~-~ 243 (348)
T TIGR01133 212 -----------------------I-VHQTGKNDL-EKVKNVYQ---------------------ELGIEAIVTFI-DE-N 243 (348)
T ss_pred -----------------------E-EEECCcchH-HHHHHHHh---------------------hCCceEEecCc-cc-C
Confidence 1 245566644 45554442 22565566676 33 8
Q ss_pred HHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC-------hhhhhccCccEEEECCCCccHHHHHHHHHH
Q 004942 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG-------TKEIVEHNVTGLLHPPGHPGAQVLAQNLRY 689 (722)
Q Consensus 617 v~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG-------~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~ 689 (722)
+.++|++||++|.+| + |++++|||++|+|+|+++.+| ..+++.++.+|++++++|.++++|+++|.+
T Consensus 244 ~~~~l~~ad~~v~~~-----g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 244 MAAAYAAADLVISRA-----G-ASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLK 317 (348)
T ss_pred HHHHHHhCCEEEECC-----C-hhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHH
Confidence 999999999999765 2 689999999999999998754 346788889999999887444999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHHhhcHHHHHH
Q 004942 690 LLKNPSVRERMAMEGRKKSNGLAERHSLG 718 (722)
Q Consensus 690 LL~np~~r~~mg~~grk~ve~~~~~~~~~ 718 (722)
+++||+.+++|++++++.+++...+.+++
T Consensus 318 ll~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (348)
T TIGR01133 318 LLLDPANLEAMAEAARKLAKPDAAKRIAE 346 (348)
T ss_pred HHcCHHHHHHHHHHHHhcCCccHHHHHHh
Confidence 99999999999999999887776666554
No 73
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.88 E-value=1.1e-20 Score=210.94 Aligned_cols=253 Identities=15% Similarity=0.173 Sum_probs=180.5
Q ss_pred ccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCC
Q 004942 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD 441 (722)
Q Consensus 362 vk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~ 441 (722)
.+.+.|.+......+...|... ......+.-+. .......|.++|+|+|++.|.+.......+-....+|++++
T Consensus 184 ~dligF~t~~~~~~Fl~~~~~~-l~~~~~~~~~~--~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~--- 257 (456)
T TIGR02400 184 YDLVGFQTYDDARNFLSAVSRE-LGLETLPNGVE--SGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLK--- 257 (456)
T ss_pred CCEEEECCHHHHHHHHHHHHHH-hCCcccCCceE--ECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcC---
Confidence 7888898888777777767431 11111111111 12334467899999999988654211110001234666663
Q ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCcccccccc
Q 004942 442 QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVS 521 (722)
Q Consensus 442 ~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~ 521 (722)
+..+|+++||+.+.||++.+++|++.+.++.|+.
T Consensus 258 ~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~---------------------------------------------- 291 (456)
T TIGR02400 258 GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEW---------------------------------------------- 291 (456)
T ss_pred CCeEEEEccccccccCHHHHHHHHHHHHHhCccc----------------------------------------------
Confidence 5679999999999999999999999998877751
Q ss_pred chhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEc-----CCchhHHHHHHhhhccCCCCCCchhHHHHHH
Q 004942 522 SESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSK-----SDGKQQQALKILIGSVGSKSNKVPYVKEILE 596 (722)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~-----G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~ 596 (722)
..++.++++ |+|++.+.++..+... ..
T Consensus 292 -----------------------------------~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~l-------------v~ 323 (456)
T TIGR02400 292 -----------------------------------RGKVVLVQIAVPSRGDVPEYQQLRRQVEEL-------------VG 323 (456)
T ss_pred -----------------------------------cCceEEEEEecCCccCchHHHHHHHHHHHH-------------HH
Confidence 012334444 5667777666665322 11
Q ss_pred HHHhcCCCCC--cEEeC-Cc--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCC----EEEcCCCChhhhhccC
Q 004942 597 FLSQHSNLSK--AMLWT-PA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP----VLGTDAGGTKEIVEHN 667 (722)
Q Consensus 597 ~l~~~~~L~~--~V~f~-G~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlP----VVaTd~GG~~EIVe~g 667 (722)
.+....+..+ .|.++ +. .+++..+|++||++|+||. .||||+|++||||||+| ||+|+.+|..+.+.
T Consensus 324 ~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~--~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~-- 399 (456)
T TIGR02400 324 RINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPL--RDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN-- 399 (456)
T ss_pred HHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECcc--ccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC--
Confidence 1111111111 14444 33 4889999999999999996 99999999999999999 99999888888775
Q ss_pred ccEEEECCCCccHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 668 VTGLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 668 ~tGlLvp~~d~~~e~LA~aI~~LL~-np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
+|++++|.|+ +++|++|..+|+ ++++++++.+++++.+.+++...++++|.
T Consensus 400 -~gllVnP~d~--~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~~~~~~W~~~~l 451 (456)
T TIGR02400 400 -GALLVNPYDI--DGMADAIARALTMPLEEREERHRAMMDKLRKNDVQRWREDFL 451 (456)
T ss_pred -CcEEECCCCH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 6999999999 999999999998 66889999999999999999999998875
No 74
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.82 E-value=4.6e-18 Score=182.49 Aligned_cols=324 Identities=14% Similarity=0.084 Sum_probs=197.0
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCC--CChhHHH------------------hCCcEEEEc
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--GLMPELA------------------RRKIKVLED 300 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g--~l~~el~------------------~~gI~Vl~~ 300 (722)
+.+||++++... .+|-......|+.+|.+.|++|.+++..... +.+..+. ..+......
T Consensus 3 ~~~rili~t~~~-G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 81 (380)
T PRK13609 3 KNPKVLILTAHY-GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIYD 81 (380)
T ss_pred CCCeEEEEEcCC-CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccc
Confidence 346888887654 3366777999999999999987777633321 1011100 000000000
Q ss_pred CC---------cc---chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHHHHHhhhccccEEEEe
Q 004942 301 RG---------EP---SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFL 368 (722)
Q Consensus 301 ~~---------~~---~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~~k~~l~rvk~li~l 368 (722)
.. .. .+.++.+||+||+++... .+.........+.+ ++.++.. |.........+++.++..
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~--~~~~~~~~~~~~ip-~~~~~td----~~~~~~~~~~~ad~i~~~ 154 (380)
T PRK13609 82 KKIFSWYANFGRKRLKLLLQAEKPDIVINTFPII--AVPELKKQTGISIP-TYNVLTD----FCLHKIWVHREVDRYFVA 154 (380)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHH--HHHHHHHhcCCCCC-eEEEeCC----CCCCcccccCCCCEEEEC
Confidence 00 00 333478999999864332 22222222222233 4433321 111111223467888888
Q ss_pred cHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCC-EEEE
Q 004942 369 SESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQD-MLVL 447 (722)
Q Consensus 369 S~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~-~lIl 447 (722)
++...+. . .+.+..+ . .+.++++.++. .|.+.. .+..+|+++|++++. .+++
T Consensus 155 s~~~~~~----l----~~~gi~~---------~--ki~v~G~p~~~-~f~~~~-------~~~~~~~~~~l~~~~~~il~ 207 (380)
T PRK13609 155 TDHVKKV----L----VDIGVPP---------E--QVVETGIPIRS-SFELKI-------NPDIIYNKYQLCPNKKILLI 207 (380)
T ss_pred CHHHHHH----H----HHcCCCh---------h--HEEEECcccCh-HHcCcC-------CHHHHHHHcCCCCCCcEEEE
Confidence 8875332 2 1122221 1 12344333332 222111 113468889998764 4566
Q ss_pred EEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhc
Q 004942 448 SLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQ 527 (722)
Q Consensus 448 ~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~ 527 (722)
+.|++...|++..+++++... ++
T Consensus 208 ~~G~~~~~k~~~~li~~l~~~----~~----------------------------------------------------- 230 (380)
T PRK13609 208 MAGAHGVLGNVKELCQSLMSV----PD----------------------------------------------------- 230 (380)
T ss_pred EcCCCCCCcCHHHHHHHHhhC----CC-----------------------------------------------------
Confidence 678898899999888876432 22
Q ss_pred cCCcccccCCCCCcccccCCCCccccCCcccceeEEEc-CCc-hhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCC
Q 004942 528 LNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSK-SDG-KQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS 605 (722)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~-G~G-~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~ 605 (722)
.+++++ |.+ +.++.++.++. .+.
T Consensus 231 --------------------------------~~~viv~G~~~~~~~~l~~~~~-----------------------~~~ 255 (380)
T PRK13609 231 --------------------------------LQVVVVCGKNEALKQSLEDLQE-----------------------TNP 255 (380)
T ss_pred --------------------------------cEEEEEeCCCHHHHHHHHHHHh-----------------------cCC
Confidence 234443 543 34556655542 122
Q ss_pred CcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcC-CCCh----hhhhccCccEEEECCCCccH
Q 004942 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD-AGGT----KEIVEHNVTGLLHPPGHPGA 680 (722)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd-~GG~----~EIVe~g~tGlLvp~~d~~~ 680 (722)
++|.|+|++++++++|++||++|. ++.|++++||||||+|||+++ .+|. .+.+.+ +|+.+...++
T Consensus 256 ~~v~~~g~~~~~~~l~~~aD~~v~------~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~--~G~~~~~~~~-- 325 (380)
T PRK13609 256 DALKVFGYVENIDELFRVTSCMIT------KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER--KGAAVVIRDD-- 325 (380)
T ss_pred CcEEEEechhhHHHHHHhccEEEe------CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh--CCcEEEECCH--
Confidence 689999999999999999999883 345889999999999999986 5553 234443 3555555676
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 681 QVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 681 e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
++++++|..+++||+.+++|++++++..+.++++.+++.+.
T Consensus 326 ~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~i~ 366 (380)
T PRK13609 326 EEVFAKTEALLQDDMKLLQMKEAMKSLYLPEPADHIVDDIL 366 (380)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999998888888888888764
No 75
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.81 E-value=3.5e-18 Score=193.91 Aligned_cols=127 Identities=21% Similarity=0.251 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCCCCC------cEEeCCch---------hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc
Q 004942 591 VKEILEFLSQHSNLSK------AMLWTPAT---------TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT 655 (722)
Q Consensus 591 ~~el~~~l~~~~~L~~------~V~f~G~~---------~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT 655 (722)
.+.+++.+.+. +|.+ .|.|.+.- .+..++|..||++|+||. +|+||++++||||||+|||+|
T Consensus 428 ~D~il~~~r~~-~l~N~~~drVkvif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~--yE~fG~~~lEAma~G~PvI~t 504 (590)
T cd03793 428 NDPILNHIRRI-QLFNSPEDRVKVVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSITT 504 (590)
T ss_pred cCHHHHHHHHh-cCcCCCCCeEEEEEcccccCCCCCcCCcchHHHhhhceEEEeccc--cCCCCcHHHHHHHcCCCEEEc
Confidence 34555555543 5543 37788732 348899999999999997 899999999999999999999
Q ss_pred CCCCh----hhhhccC-ccEEEECCCCc-----cHHHHHHHHHHhhcCHHHHHHHHHHHH--HHHHhhcHHHHHHHHH
Q 004942 656 DAGGT----KEIVEHN-VTGLLHPPGHP-----GAQVLAQNLRYLLKNPSVRERMAMEGR--KKSNGLAERHSLGRYC 721 (722)
Q Consensus 656 d~GG~----~EIVe~g-~tGlLvp~~d~-----~~e~LA~aI~~LL~np~~r~~mg~~gr--k~ve~~~~~~~~~~Y~ 721 (722)
+.+|+ .|++.++ ..|+++.+.+. +.+.|+++|.++++ .+.|+++..+++ +.++.|+|++.+..|.
T Consensus 505 ~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~~~~~-~~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~ 581 (590)
T cd03793 505 NLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMYEFCQ-LSRRQRIIQRNRTERLSDLLDWRNLGRYYR 581 (590)
T ss_pred cCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99998 6777655 35766653221 23889999999884 467888888776 7788899999999885
No 76
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.81 E-value=1.9e-18 Score=204.37 Aligned_cols=255 Identities=13% Similarity=0.133 Sum_probs=178.9
Q ss_pred cccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCC
Q 004942 361 RVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLT 440 (722)
Q Consensus 361 rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~ 440 (722)
..+.+-|.+......+...|..- ++.......+........|.+||+|||++.|.+.......+.....+|+.++
T Consensus 203 ~aDligF~t~~y~r~Fl~~~~r~---l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~-- 277 (797)
T PLN03063 203 TADLIGFHTYDFARHFLSACTRI---LGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFA-- 277 (797)
T ss_pred cCCEEEeCCHHHHHHHHHHHHHH---hCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcC--
Confidence 37778888888766666666431 1211111112222333457899999999888653221100001234555544
Q ss_pred CCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccc
Q 004942 441 DQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSV 520 (722)
Q Consensus 441 ~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~ 520 (722)
+..+|+++||+.+.||+..+++|++.+.++.|+. +
T Consensus 278 -~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~------------------------~-------------------- 312 (797)
T PLN03063 278 -GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEW------------------------R-------------------- 312 (797)
T ss_pred -CCeEEEEecccccccCHHHHHHHHHHHHHhCccc------------------------c--------------------
Confidence 4678999999999999999999999998887761 0
Q ss_pred cchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEc-----CCchhHHHHHHhhhccCCCCCCchhHHHHH
Q 004942 521 SSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSK-----SDGKQQQALKILIGSVGSKSNKVPYVKEIL 595 (722)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~-----G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~ 595 (722)
.++.|+.+ |+|++.+.++..+..++
T Consensus 313 -------------------------------------~kvvLvqia~psr~~~~~y~~l~~~v~~l~------------- 342 (797)
T PLN03063 313 -------------------------------------DKVMLVQIAVPTRNDVPEYQKLKSQVHELV------------- 342 (797)
T ss_pred -------------------------------------CcEEEEEEecCCCCchHHHHHHHHHHHHHH-------------
Confidence 01112222 56777777776664331
Q ss_pred HHHHhcCCCC--CcEEeCC-c--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCC----EEEcCCCChhhhhcc
Q 004942 596 EFLSQHSNLS--KAMLWTP-A--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP----VLGTDAGGTKEIVEH 666 (722)
Q Consensus 596 ~~l~~~~~L~--~~V~f~G-~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlP----VVaTd~GG~~EIVe~ 666 (722)
..+...++-. .-|.+++ . .+++..+|++||++|+||. .||||++++||||||+| +|.|+.+|..+.+
T Consensus 343 g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSl--rEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l-- 418 (797)
T PLN03063 343 GRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSL--RDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL-- 418 (797)
T ss_pred HHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCcc--ccccCcchhhHheeecCCCCCEEeeCCcCchhhh--
Confidence 1121111110 1122332 2 3789999999999999996 99999999999999999 9999999999986
Q ss_pred CccEEEECCCCccHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 667 NVTGLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 667 g~tGlLvp~~d~~~e~LA~aI~~LL~-np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
+.+|++++|.|+ +++|++|..+|+ ++++++++.+++++.+.++++..+++.|.
T Consensus 419 ~~~allVnP~D~--~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~~~~~Wa~~fl 472 (797)
T PLN03063 419 GAGALLVNPWNI--TEVSSAIKEALNMSDEERETRHRHNFQYVKTHSAQKWADDFM 472 (797)
T ss_pred cCCeEEECCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhhCCHHHHHHHHH
Confidence 346999999999 999999999999 88899999999999999999999888764
No 77
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.79 E-value=9.6e-18 Score=160.70 Aligned_cols=118 Identities=38% Similarity=0.558 Sum_probs=99.1
Q ss_pred EEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhc
Q 004942 448 SLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQ 527 (722)
Q Consensus 448 ~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~ 527 (722)
++|++.+.||++.+++++..+.++.++
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~----------------------------------------------------- 135 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPD----------------------------------------------------- 135 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCC-----------------------------------------------------
Confidence 999999999999999999999876554
Q ss_pred cCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCc
Q 004942 528 LNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKA 607 (722)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~ 607 (722)
.+++++|.+......+..+. ..+..++
T Consensus 136 --------------------------------~~~~i~G~~~~~~~~~~~~~---------------------~~~~~~~ 162 (229)
T cd01635 136 --------------------------------LKLVIAGDGPEREYLEELLA---------------------ALLLLDR 162 (229)
T ss_pred --------------------------------eEEEEEeCCCChHHHHHHHH---------------------hcCCccc
Confidence 46777888776655554332 2256789
Q ss_pred EEeCCc---hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEE
Q 004942 608 MLWTPA---TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLH 673 (722)
Q Consensus 608 V~f~G~---~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLv 673 (722)
|.++|. .+++..+++.||++++||. .|++|++++|||+||+|||+|+.++..|++.++.+|+++
T Consensus 163 v~~~~~~~~~~~~~~~~~~~di~l~~~~--~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 163 VIFLGGLDPEELLALLLAAADVFVLPSL--REGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred EEEeCCCCcHHHHHHHhhcCCEEEeccc--ccCcChHHHHHHhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 999997 3667777777999999998 899999999999999999999999999999998999874
No 78
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.78 E-value=1.1e-17 Score=196.24 Aligned_cols=252 Identities=16% Similarity=0.221 Sum_probs=173.3
Q ss_pred ccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCC
Q 004942 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD 441 (722)
Q Consensus 362 vk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~ 441 (722)
.+.+-|.+....+.+...|... .........+ ........+.++|+|+|++.|.+.......+.....+|+.+ .
T Consensus 190 ~Dligf~t~~~~r~Fl~~~~~~-l~~~~~~~~~--~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~---~ 263 (726)
T PRK14501 190 ADLIGFHTYDYVRHFLSSVLRV-LGYETELGEI--RLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDL---R 263 (726)
T ss_pred CCeEEeCCHHHHHHHHHHHHHH-cCCccCCCeE--EECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHc---C
Confidence 6777787777655566666432 1111111111 11222335789999999999876432111111123455553 3
Q ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCcccccccc
Q 004942 442 QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVS 521 (722)
Q Consensus 442 ~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~ 521 (722)
+..+|+++||+.+.||+..+++|+..+.++.|+.
T Consensus 264 ~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~---------------------------------------------- 297 (726)
T PRK14501 264 GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEW---------------------------------------------- 297 (726)
T ss_pred CCEEEEEecCcccccCHHHHHHHHHHHHHhCccc----------------------------------------------
Confidence 5679999999999999999999999998877751
Q ss_pred chhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcC----Cc-hhHHHHHHhhhccCCCCCCchhHHHHHH
Q 004942 522 SESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKS----DG-KQQQALKILIGSVGSKSNKVPYVKEILE 596 (722)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G----~G-~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~ 596 (722)
..+++|+++| +| ++.+.++..+. ++..
T Consensus 298 -----------------------------------~~~v~lv~v~~~sr~~~~~~~~l~~~~~-------------~~v~ 329 (726)
T PRK14501 298 -----------------------------------RGKVRLVQVAVPSRTGVPQYQEMKREID-------------ELVG 329 (726)
T ss_pred -----------------------------------cCCEEEEEEecCCCcchHHHHHHHHHHH-------------HHHH
Confidence 1224556665 34 44455554442 1112
Q ss_pred HHHhcCC---CCCcEEeCCc--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHh-----CCCEEEcCCCChhhhhcc
Q 004942 597 FLSQHSN---LSKAMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGTDAGGTKEIVEH 666 (722)
Q Consensus 597 ~l~~~~~---L~~~V~f~G~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~-----GlPVVaTd~GG~~EIVe~ 666 (722)
.+....+ ....+.|.|. .+++..+|++||++|+||. .||||+|++||||| |.||++..+|+..+++
T Consensus 330 ~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~--~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~-- 405 (726)
T PRK14501 330 RINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPL--RDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA-- 405 (726)
T ss_pred HHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEeccc--ccccCcccceEEEEcCCCCceEEEecccchhHHhC--
Confidence 2211112 1123456664 4789999999999999996 99999999999999 5578888889999886
Q ss_pred CccEEEECCCCccHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 667 NVTGLLHPPGHPGAQVLAQNLRYLLKNP-SVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 667 g~tGlLvp~~d~~~e~LA~aI~~LL~np-~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
.|++++|.|+ +++|++|.+++.+| +.+++...++++.+.+|++..++++|.
T Consensus 406 --~~llv~P~d~--~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~~~~~~w~~~~l 457 (726)
T PRK14501 406 --EALLVNPNDI--EGIAAAIKRALEMPEEEQRERMQAMQERLRRYDVHKWASDFL 457 (726)
T ss_pred --cCeEECCCCH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3899999998 99999999999864 566666678999999999999998875
No 79
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.78 E-value=2.1e-17 Score=178.98 Aligned_cols=215 Identities=16% Similarity=0.145 Sum_probs=152.0
Q ss_pred ccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCC
Q 004942 360 DRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGL 439 (722)
Q Consensus 360 ~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl 439 (722)
..++.++..|+...+. . .+.+..+ ..+.+++++++...+.+.. .+..+|+++|+
T Consensus 149 ~~~d~~~~~s~~~~~~----l----~~~g~~~-----------~ki~v~g~~v~~~f~~~~~-------~~~~~r~~~gl 202 (382)
T PLN02605 149 KGVTRCFCPSEEVAKR----A----LKRGLEP-----------SQIRVYGLPIRPSFARAVR-------PKDELRRELGM 202 (382)
T ss_pred CCCCEEEECCHHHHHH----H----HHcCCCH-----------HHEEEECcccCHhhccCCC-------CHHHHHHHcCC
Confidence 3577788888775332 1 2223222 1246677777654333221 12567899999
Q ss_pred CCCCEEEEEEecCCCCCCHHHHHHHHHHhHHh----CCCCcchhhhhccccccccCcccccccccccccccccccccCcc
Q 004942 440 TDQDMLVLSLSSINPGKGQLLLVESAQLMIEQ----EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSS 515 (722)
Q Consensus 440 ~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~ 515 (722)
+++.++|+++|+....|++..+++++..+... .++
T Consensus 203 ~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~----------------------------------------- 241 (382)
T PLN02605 203 DEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPI----------------------------------------- 241 (382)
T ss_pred CCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCC-----------------------------------------
Confidence 98889999999999999999999998765311 111
Q ss_pred ccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchh-HHHHHHhhhccCCCCCCchhHHHH
Q 004942 516 NELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQ-QQALKILIGSVGSKSNKVPYVKEI 594 (722)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~-~~~Lk~lI~~~Gs~sn~~~Y~~el 594 (722)
...+++.|+|+. ++.++.+
T Consensus 242 -------------------------------------------~~~~vi~G~~~~~~~~L~~~----------------- 261 (382)
T PLN02605 242 -------------------------------------------GQVVVICGRNKKLQSKLESR----------------- 261 (382)
T ss_pred -------------------------------------------ceEEEEECCCHHHHHHHHhh-----------------
Confidence 013566777742 3333322
Q ss_pred HHHHHhcCCCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcC------CCChhhhhccCc
Q 004942 595 LEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD------AGGTKEIVEHNV 668 (722)
Q Consensus 595 ~~~l~~~~~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd------~GG~~EIVe~g~ 668 (722)
....+|.|+|++++++++|++||++|.++ .|++++||||||+|||+++ .|+...++++ .
T Consensus 262 --------~~~~~v~~~G~~~~~~~l~~aaDv~V~~~------g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g 326 (382)
T PLN02605 262 --------DWKIPVKVRGFVTNMEEWMGACDCIITKA------GPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-G 326 (382)
T ss_pred --------cccCCeEEEeccccHHHHHHhCCEEEECC------CcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-C
Confidence 11246999999999999999999999755 3789999999999999998 3555555554 4
Q ss_pred cEEEECCCCccHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 004942 669 TGLLHPPGHPGAQVLAQNLRYLLKN-PSVRERMAMEGRKKSNGLAERHSLGRY 720 (722)
Q Consensus 669 tGlLvp~~d~~~e~LA~aI~~LL~n-p~~r~~mg~~grk~ve~~~~~~~~~~Y 720 (722)
.|++. +++ ++|+++|..++.| ++.+++|++++++.....+.+.+++..
T Consensus 327 ~g~~~--~~~--~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l 375 (382)
T PLN02605 327 FGAFS--ESP--KEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDL 375 (382)
T ss_pred ceeec--CCH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 56653 666 9999999999998 999999999999998777776666544
No 80
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.74 E-value=2.3e-16 Score=171.92 Aligned_cols=108 Identities=12% Similarity=0.089 Sum_probs=89.0
Q ss_pred CCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC-CC----hhhhhccCccEEEECCCCc
Q 004942 604 LSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GG----TKEIVEHNVTGLLHPPGHP 678 (722)
Q Consensus 604 L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~-GG----~~EIVe~g~tGlLvp~~d~ 678 (722)
..++|.++|++++++++|++||++|.. +.|++++||||+|+|+|+++. +| ...++.+...|++. +++
T Consensus 254 ~~~~v~~~G~~~~~~~~~~~aDl~I~k------~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~--~~~ 325 (391)
T PRK13608 254 SNENVLILGYTKHMNEWMASSQLMITK------PGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIA--DTP 325 (391)
T ss_pred cCCCeEEEeccchHHHHHHhhhEEEeC------CchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEe--CCH
Confidence 345799999999999999999999953 458899999999999999964 44 22344555566653 455
Q ss_pred cHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 679 ~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
++++++|..+++|++.+++|++++++..+.++++.+++.+.
T Consensus 326 --~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~ 366 (391)
T PRK13608 326 --EEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTICRDLL 366 (391)
T ss_pred --HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 89999999999999999999999999998899888887764
No 81
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=3.1e-16 Score=154.00 Aligned_cols=192 Identities=31% Similarity=0.526 Sum_probs=152.0
Q ss_pred EEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCC--CEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhh
Q 004942 405 VAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQ--DMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRK 482 (722)
Q Consensus 405 v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~--~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~ 482 (722)
+..+|++++...+.+.. .++..+ ...++++|++.+.||++.+++++..+.+..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~-------- 230 (381)
T COG0438 174 IVVIPNGIDTEKFAPAR---------------IGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPD-------- 230 (381)
T ss_pred ceEecCCcCHHHcCccc---------------cCCCcccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCC--------
Confidence 37889998887776421 112222 36899999999999999999999999765432
Q ss_pred ccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeE
Q 004942 483 SRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKV 562 (722)
Q Consensus 483 ~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 562 (722)
.++
T Consensus 231 -----------------------------------------------------------------------------~~~ 233 (381)
T COG0438 231 -----------------------------------------------------------------------------IKL 233 (381)
T ss_pred -----------------------------------------------------------------------------eEE
Confidence 356
Q ss_pred EEcCCchhH-HHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchh--hHHHHHHHcCEEEEcCCCCCCCcc
Q 004942 563 LSKSDGKQQ-QALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFG 639 (722)
Q Consensus 563 li~G~G~~~-~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~--dv~~lysaADv~V~pS~~l~Egfg 639 (722)
+++|.|+.. +.+..++ ..++...+|.|+|.+. ++..++..||++++||. .|+||
T Consensus 234 ~~~g~~~~~~~~~~~~~---------------------~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~--~e~~~ 290 (381)
T COG0438 234 VIVGDGPERREELEKLA---------------------KKLGLEDNVKFLGYVPDEELAELLASADVFVLPSL--SEGFG 290 (381)
T ss_pred EEEcCCCccHHHHHHHH---------------------HHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccc--cccch
Confidence 677777663 3333333 2225567899999875 78889999999999997 69999
Q ss_pred HHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH-HhhcHHHHHH
Q 004942 640 RVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKS-NGLAERHSLG 718 (722)
Q Consensus 640 lviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~v-e~~~~~~~~~ 718 (722)
++++|||++|+|||+++.++..|++.++.+|+++++.+. +++++++..++++++.++.++..+++.+ +.|+|+..+.
T Consensus 291 ~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (381)
T COG0438 291 LVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLVPPGDV--EELADALEQLLEDPELREELGEAARERVEEEFSWERIAE 368 (381)
T ss_pred HHHHHHHhcCCcEEECCCCChHHHhcCCCceEecCCCCH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999999998877887776666 9999999999999988999988666666 5799999887
Q ss_pred HHH
Q 004942 719 RYC 721 (722)
Q Consensus 719 ~Y~ 721 (722)
++.
T Consensus 369 ~~~ 371 (381)
T COG0438 369 QLL 371 (381)
T ss_pred HHH
Confidence 753
No 82
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.6e-15 Score=170.62 Aligned_cols=207 Identities=21% Similarity=0.279 Sum_probs=159.1
Q ss_pred ceEEeecCCCCCCCCCchhHH-----------HHhhhhHHHHHHHhCCCC--CCEEEEEEecCCCCCCHHHHHHHHHHhH
Q 004942 403 AFVAGFTCSLNTPTSSPEKMR-----------EKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKGQLLLVESAQLMI 469 (722)
Q Consensus 403 ~~v~vIpngid~~~f~~~~~~-----------ekr~~~r~~~R~elgl~~--~~~lIl~vGri~~~Kg~~~LleA~~~L~ 469 (722)
..+.+|-||+|...+.|.... .++...+..+.+++|++. +.+++.++||+..+||++++++++..+.
T Consensus 241 ~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l 320 (487)
T COG0297 241 GKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELL 320 (487)
T ss_pred ccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHH
Confidence 456899999999988775431 135667889999999984 4589999999999999999999999998
Q ss_pred HhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCC
Q 004942 470 EQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTD 549 (722)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (722)
++.
T Consensus 321 ~~~----------------------------------------------------------------------------- 323 (487)
T COG0297 321 EQG----------------------------------------------------------------------------- 323 (487)
T ss_pred HhC-----------------------------------------------------------------------------
Confidence 753
Q ss_pred ccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchh-hHHHHHHHcCEEE
Q 004942 550 AVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT-RVASLYSAADVYV 628 (722)
Q Consensus 550 ~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~-dv~~lysaADv~V 628 (722)
.++++.|.| ...++.-+ ......+.+ .-....|..+ -...+|+.||+++
T Consensus 324 ----------~~~vilG~g--d~~le~~~----------------~~la~~~~~--~~~~~i~~~~~la~~i~agaD~~l 373 (487)
T COG0297 324 ----------WQLVLLGTG--DPELEEAL----------------RALASRHPG--RVLVVIGYDEPLAHLIYAGADVIL 373 (487)
T ss_pred ----------ceEEEEecC--cHHHHHHH----------------HHHHHhcCc--eEEEEeeecHHHHHHHHhcCCEEE
Confidence 246777777 22222211 111222222 2233335543 3668899999999
Q ss_pred EcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc--------CccEEEECCCCccHHHHHHHHHHhhc---CHHH-
Q 004942 629 INSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--------NVTGLLHPPGHPGAQVLAQNLRYLLK---NPSV- 696 (722)
Q Consensus 629 ~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~--------g~tGlLvp~~d~~~e~LA~aI~~LL~---np~~- 696 (722)
+||+ .|+||++-++||.+|+++|+...||++|.|.+ ..+|+++.+.++ ++|+.+|++.+. ++..
T Consensus 374 mPSr--fEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~--~~l~~al~rA~~~y~~~~~~ 449 (487)
T COG0297 374 MPSR--FEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNP--DHLANALRRALVLYRAPPLL 449 (487)
T ss_pred eCCc--CcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCH--HHHHHHHHHHHHHhhCCHHH
Confidence 9998 99999999999999999999999999998874 579999998887 999999998764 4444
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHC
Q 004942 697 RERMAMEGRKKSNGLAERHSLGRYCN 722 (722)
Q Consensus 697 r~~mg~~grk~ve~~~~~~~~~~Y~~ 722 (722)
++++...+.. .+|+|+.++.+|.+
T Consensus 450 w~~~~~~~m~--~d~sw~~sa~~y~~ 473 (487)
T COG0297 450 WRKVQPNAMG--ADFSWDLSAKEYVE 473 (487)
T ss_pred HHHHHHhhcc--cccCchhHHHHHHH
Confidence 8888777666 67999999999863
No 83
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.72 E-value=9.4e-16 Score=165.40 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=80.6
Q ss_pred CcEEeCCch--hhHHHHHHHcCEEEEcCCC---CCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccH
Q 004942 606 KAMLWTPAT--TRVASLYSAADVYVINSQG---LGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGA 680 (722)
Q Consensus 606 ~~V~f~G~~--~dv~~lysaADv~V~pS~~---l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~ 680 (722)
.+|.|+|.+ ++++.+|+.+|++++|+.. ..+++|++++||||||+|||+|+.+ ++++... |.++.++|+
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~---~~~~~~~-~~~~~~~d~-- 327 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLP---EVRRYED-EVVLIADDP-- 327 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcH---HHHhhcC-cEEEeCCCH--
Confidence 589999987 7899999999999999861 1247899999999999999999754 4555443 344444566
Q ss_pred HHHHHHHHHhhcCHH-HHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 681 QVLAQNLRYLLKNPS-VRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 681 e~LA~aI~~LL~np~-~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
++++++|..++.++. .+.+ +.++.+++++|+..++++.
T Consensus 328 ~~~~~ai~~~l~~~~~~~~~---~~~~~~~~~sW~~~a~~~~ 366 (373)
T cd04950 328 EEFVAAIEKALLEDGPARER---RRLRLAAQNSWDARAAEML 366 (373)
T ss_pred HHHHHHHHHHHhcCCchHHH---HHHHHHHHCCHHHHHHHHH
Confidence 999999999765443 2222 2223678899999998874
No 84
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.70 E-value=1.5e-15 Score=162.43 Aligned_cols=86 Identities=22% Similarity=0.224 Sum_probs=72.4
Q ss_pred hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc-----------------CCCChhhhhccCc--cEEEECC
Q 004942 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT-----------------DAGGTKEIVEHNV--TGLLHPP 675 (722)
Q Consensus 615 ~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT-----------------d~GG~~EIVe~g~--tGlLvp~ 675 (722)
.++..+|++||++|.+| |.+++|||+||+|||++ +++++++++.++. .+++.+.
T Consensus 253 ~~~~~~~~~aDl~v~~s-------G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 325 (380)
T PRK00025 253 GQKREAMAAADAALAAS-------GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEE 325 (380)
T ss_pred ccHHHHHHhCCEEEECc-------cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCC
Confidence 47999999999999987 57888999999999987 6678888888753 5566666
Q ss_pred CCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 004942 676 GHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSN 709 (722)
Q Consensus 676 ~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve 709 (722)
.++ +.|++.+..+++|++.+++|++++.+..+
T Consensus 326 ~~~--~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 357 (380)
T PRK00025 326 ATP--EKLARALLPLLADGARRQALLEGFTELHQ 357 (380)
T ss_pred CCH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 666 99999999999999999999998754443
No 85
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.67 E-value=1.5e-14 Score=163.07 Aligned_cols=255 Identities=13% Similarity=0.162 Sum_probs=179.2
Q ss_pred ccEEEEecHHhHHHHhhHHHhh-hhhccCCC----cc-------------cccCCCcccceEEeecCCCCCCCCCchhHH
Q 004942 362 VKLLVFLSESQTKQWLTWCEEE-KLKLRSQP----AV-------------VPLSVNDELAFVAGFTCSLNTPTSSPEKMR 423 (722)
Q Consensus 362 vk~li~lS~~~~~~~~~~~~~~-~i~l~~~~----~v-------------v~l~v~~~~~~v~vIpngid~~~f~~~~~~ 423 (722)
.+.+-|.+......++..|... +....... .. ..+..+.....|.++|+|||++.|.+....
T Consensus 189 aDliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~~ 268 (487)
T TIGR02398 189 CDYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSALAA 268 (487)
T ss_pred CCeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHhcC
Confidence 6778888887766677777532 11110000 00 001112334457899999999988543211
Q ss_pred HHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccc
Q 004942 424 EKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRG 503 (722)
Q Consensus 424 ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~ 503 (722)
..-.-....+|++++ +..+|++++|+.+.||+...++|+..+.++.|+.
T Consensus 269 ~~~~~~~~~lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~---------------------------- 317 (487)
T TIGR02398 269 ASIREMMERIRSELA---GVKLILSAERVDYTKGILEKLNAYERLLERRPEL---------------------------- 317 (487)
T ss_pred chHHHHHHHHHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHhCccc----------------------------
Confidence 111112356888887 5679999999999999999999999999998872
Q ss_pred cccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCch-----h----HHHH
Q 004942 504 LLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK-----Q----QQAL 574 (722)
Q Consensus 504 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~-----~----~~~L 574 (722)
..++.|+++|.+. + +..+
T Consensus 318 -----------------------------------------------------~gkv~Lvqi~~psr~~v~~y~~l~~~v 344 (487)
T TIGR02398 318 -----------------------------------------------------LGKVTLVTACVPAASGMTIYDELQGQI 344 (487)
T ss_pred -----------------------------------------------------cCceEEEEEeCCCcccchHHHHHHHHH
Confidence 1335566666552 2 2333
Q ss_pred HHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCC--
Q 004942 575 KILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV-- 650 (722)
Q Consensus 575 k~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~Gl-- 650 (722)
+.+++.+. ..... .+...-+.+.+.. +++..+|+.|||+++||. .|||++|..|||||+.
T Consensus 345 ~~~v~~IN-------------~~fg~-~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~l--rDGmNLVa~Eyva~~~~~ 408 (487)
T TIGR02398 345 EQAVGRIN-------------GRFAR-IGWTPLQFFTRSLPYEEVSAWFAMADVMWITPL--RDGLNLVAKEYVAAQGLL 408 (487)
T ss_pred HHHHHHHh-------------hccCC-CCCccEEEEcCCCCHHHHHHHHHhCCEEEECcc--ccccCcchhhHHhhhcCC
Confidence 33333221 11111 1344557777864 789999999999999996 9999999999999998
Q ss_pred --CEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 651 --PVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNP-SVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 651 --PVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np-~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
|+|.|..+|+.+.+. .+++++|.|+ +++|++|..+|+.| ++|++.....++.+.+++....++.+.
T Consensus 409 ~GvLILSefaGaa~~l~---~AllVNP~d~--~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~d~~~W~~~fl 477 (487)
T TIGR02398 409 DGVLVLSEFAGAAVELK---GALLTNPYDP--VRMDETIYVALAMPKAEQQARMREMFDAVNYYDVQRWADEFL 477 (487)
T ss_pred CCCEEEeccccchhhcC---CCEEECCCCH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 999999999987774 4899999999 99999999999965 467777778888888888877777664
No 86
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.60 E-value=1.4e-13 Score=147.49 Aligned_cols=105 Identities=23% Similarity=0.257 Sum_probs=81.8
Q ss_pred CCCCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc-CCCChhhhhccCccEEEECCCCcc
Q 004942 603 NLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT-DAGGTKEIVEHNVTGLLHPPGHPG 679 (722)
Q Consensus 603 ~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT-d~GG~~EIVe~g~tGlLvp~~d~~ 679 (722)
+..++|.|++.. .++..+|++||+++.+| |.+++|||+||+|||++ +.|+.+|+++++ .+++++ .|+
T Consensus 252 ~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-------g~~~~EA~a~g~PvI~~~~~~~~~e~~~~g-~~~lv~-~d~- 321 (365)
T TIGR00236 252 GDSKRVHLIEPLEYLDFLNLAANSHLILTDS-------GGVQEEAPSLGKPVLVLRDTTERPETVEAG-TNKLVG-TDK- 321 (365)
T ss_pred CCCCCEEEECCCChHHHHHHHHhCCEEEECC-------hhHHHHHHHcCCCEEECCCCCCChHHHhcC-ceEEeC-CCH-
Confidence 445689999865 57889999999999877 35689999999999996 779999999876 455664 566
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHH
Q 004942 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLG 718 (722)
Q Consensus 680 ~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~ 718 (722)
+++++++..+++|++.+++|+.......+..+++.+++
T Consensus 322 -~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~ 359 (365)
T TIGR00236 322 -ENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVE 359 (365)
T ss_pred -HHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHH
Confidence 99999999999999999999876533333344444444
No 87
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.57 E-value=5.6e-13 Score=159.34 Aligned_cols=259 Identities=14% Similarity=0.154 Sum_probs=175.0
Q ss_pred ccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCC
Q 004942 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD 441 (722)
Q Consensus 362 vk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~ 441 (722)
.+.+-|.+......++..|... ++......-+..+.....|.++|.|||...|........-+-....+|+.++
T Consensus 288 aDlIGFqT~~y~rhFl~~c~rl---Lg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~--- 361 (934)
T PLN03064 288 ADLVGFHTYDYARHFVSACTRI---LGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFA--- 361 (934)
T ss_pred CCeEEeCCHHHHHHHHHHHHHH---hCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhC---
Confidence 6777788777666677767431 2221111112223333456789999999988643211111112356777765
Q ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCcccccccc
Q 004942 442 QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVS 521 (722)
Q Consensus 442 ~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~ 521 (722)
+..+|++++|+.+.||+...++|+..+.++.|+. +|+..+ ++++.|+
T Consensus 362 g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~------------------------r~kVVL--vQIa~ps------- 408 (934)
T PLN03064 362 GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEW------------------------RDKVVL--LQIAVPT------- 408 (934)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHHhCccc------------------------cCCEEE--EEEcCCC-------
Confidence 4569999999999999999999999998888872 111110 0011111
Q ss_pred chhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhc
Q 004942 522 SESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQH 601 (722)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~ 601 (722)
-+++++.+.++.-+. ++...|-..
T Consensus 409 -------------------------------------------r~~v~eY~~l~~~V~-------------~~V~rIN~~ 432 (934)
T PLN03064 409 -------------------------------------------RTDVPEYQKLTSQVH-------------EIVGRINGR 432 (934)
T ss_pred -------------------------------------------CCCcHHHHHHHHHHH-------------HHHHHHhhh
Confidence 145566666554442 222233223
Q ss_pred CCCCC--cEEeCC---chhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCC----CEEEcCCCChhhhhccCccEEE
Q 004942 602 SNLSK--AMLWTP---ATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV----PVLGTDAGGTKEIVEHNVTGLL 672 (722)
Q Consensus 602 ~~L~~--~V~f~G---~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~Gl----PVVaTd~GG~~EIVe~g~tGlL 672 (722)
++..+ -|.++. ..+++..+|+.|||+++||. .|||+++..|||||+. ++|.|...|..+.+. ..+++
T Consensus 433 fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTsl--rDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L~--~~All 508 (934)
T PLN03064 433 FGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSL--RDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSLG--AGAIL 508 (934)
T ss_pred ccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCcc--ccccCchHHHHHHhhcCCCCCeEEeCCCchHHHhC--CceEE
Confidence 22211 234333 23789999999999999995 9999999999999944 444488888888773 35899
Q ss_pred ECCCCccHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 673 HPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 673 vp~~d~~~e~LA~aI~~LL~-np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
++|.|+ +++|++|..+|+ ++++++++..++++.+.++++..+++.|.
T Consensus 509 VNP~D~--~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~~d~~~Wa~~fl 556 (934)
T PLN03064 509 VNPWNI--TEVAASIAQALNMPEEEREKRHRHNFMHVTTHTAQEWAETFV 556 (934)
T ss_pred ECCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 999999 999999999999 99999999999999999999988888764
No 88
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.57 E-value=2e-13 Score=144.45 Aligned_cols=292 Identities=18% Similarity=0.152 Sum_probs=174.0
Q ss_pred HHHHHHHHHhC-CCEEEEEEEcCCCCChhH----HH----hCCcEE-EEcCCc--c-------------chhhhcCccEE
Q 004942 261 MMELATELLSC-GATVSAVVLSKRGGLMPE----LA----RRKIKV-LEDRGE--P-------------SFKTSMKADLV 315 (722)
Q Consensus 261 m~eLA~eL~s~-G~~VsvV~ls~~g~l~~e----l~----~~gI~V-l~~~~~--~-------------~~~~~~k~DlV 315 (722)
+.-+.++|.+. |+++.+++.. ..+.+. .. ..+.++ +..... . +...+.+||+|
T Consensus 15 ~~pl~~~l~~~~~~~~~~~~tg--~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV 92 (363)
T cd03786 15 LAPLIRALKKDPGFELVLVVTG--QHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLV 92 (363)
T ss_pred HHHHHHHHhcCCCCCEEEEEeC--CCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 67788899887 8999987732 222222 11 122222 222221 1 22336799999
Q ss_pred EECCchhhHhHHHHHHhccCCCccEEEEEecchh----HhHHHHHh-hhccccEEEEecHHhHHHHhhHHHhhhhhccCC
Q 004942 316 IAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR----EYFDRAKL-VLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQ 390 (722)
Q Consensus 316 ia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~----~yf~~~k~-~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~ 390 (722)
|++...... +...++....+.+ +++..+..+. ........ .....+.+++.++...+. . ++.+..
T Consensus 93 ~~~g~~~~~-~~~~~aa~~~~iP-vv~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~----l----~~~G~~ 162 (363)
T cd03786 93 LVLGDTNET-LAAALAAFKLGIP-VAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPTEEARRN----L----LQEGEP 162 (363)
T ss_pred EEeCCchHH-HHHHHHHHHcCCC-EEEEecccccCCCCCCchHHHHHHHHHhhhccCCCHHHHHH----H----HHcCCC
Confidence 998644333 3333444444544 4432211110 11111111 112244455566654221 1 122322
Q ss_pred CcccccCCCcccceEEeecCCC-CCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCC---CCCHHHHHHHHH
Q 004942 391 PAVVPLSVNDELAFVAGFTCSL-NTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINP---GKGQLLLVESAQ 466 (722)
Q Consensus 391 ~~vv~l~v~~~~~~v~vIpngi-d~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~---~Kg~~~LleA~~ 466 (722)
+ ..+.+++|++ |...+.+... .....++.++++++++++++.|+... .|+++.+++|++
T Consensus 163 ~-----------~kI~vign~v~d~~~~~~~~~------~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~ 225 (363)
T cd03786 163 P-----------ERIFVVGNTMIDALLRLLELA------KKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALA 225 (363)
T ss_pred c-----------ccEEEECchHHHHHHHHHHhh------ccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHH
Confidence 2 1346788874 4322211111 01223567888877888889999774 799999999999
Q ss_pred HhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccC
Q 004942 467 LMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIG 546 (722)
Q Consensus 467 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (722)
.+.+. +
T Consensus 226 ~l~~~--~------------------------------------------------------------------------ 231 (363)
T cd03786 226 ELAEE--D------------------------------------------------------------------------ 231 (363)
T ss_pred HHHhc--C------------------------------------------------------------------------
Confidence 88432 2
Q ss_pred CCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCC-CCcEEeCCc--hhhHHHHHHH
Q 004942 547 NTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNL-SKAMLWTPA--TTRVASLYSA 623 (722)
Q Consensus 547 ~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L-~~~V~f~G~--~~dv~~lysa 623 (722)
..+++.|+++.++.++..+... ++ .++|.|+|. .+++..+|.+
T Consensus 232 -------------~~vi~~~~~~~~~~l~~~~~~~---------------------~~~~~~v~~~~~~~~~~~~~l~~~ 277 (363)
T cd03786 232 -------------VPVVFPNHPRTRPRIREAGLEF---------------------LGHHPNVLLISPLGYLYFLLLLKN 277 (363)
T ss_pred -------------CEEEEECCCChHHHHHHHHHhh---------------------ccCCCCEEEECCcCHHHHHHHHHc
Confidence 2355667776666666655322 33 468999874 4789999999
Q ss_pred cCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC-CChhhhhccCccEEEECCC-CccHHHHHHHHHHhhcCHHHHHHHH
Q 004942 624 ADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGTKEIVEHNVTGLLHPPG-HPGAQVLAQNLRYLLKNPSVRERMA 701 (722)
Q Consensus 624 ADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~-GG~~EIVe~g~tGlLvp~~-d~~~e~LA~aI~~LL~np~~r~~mg 701 (722)
||++|.+| + | ++.|||++|+|||+++. +..+|.+++ |+.+..+ ++ ++++++|..+++++..+++|.
T Consensus 278 ad~~v~~S---g---g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~---g~~~~~~~~~--~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 278 ADLVLTDS---G---G-IQEEASFLGVPVLNLRDRTERPETVES---GTNVLVGTDP--EAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred CcEEEEcC---c---c-HHhhhhhcCCCEEeeCCCCccchhhhe---eeEEecCCCH--HHHHHHHHHHhcCchhhhcCC
Confidence 99999999 3 3 57999999999999974 556677765 4444444 45 899999999999998887764
No 89
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.54 E-value=2e-14 Score=131.54 Aligned_cols=132 Identities=30% Similarity=0.466 Sum_probs=95.5
Q ss_pred EEEEEEecCCCCCCHHHHHH-HHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccc
Q 004942 444 MLVLSLSSINPGKGQLLLVE-SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSS 522 (722)
Q Consensus 444 ~lIl~vGri~~~Kg~~~Lle-A~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~ 522 (722)
+.|+++|++.+.|+++.+++ ++..+.++.|+
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~------------------------------------------------ 34 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPD------------------------------------------------ 34 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTT------------------------------------------------
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcC------------------------------------------------
Confidence 57999999999999999999 99999888776
Q ss_pred hhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcC
Q 004942 523 ESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHS 602 (722)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~ 602 (722)
++|.++|.++++ ++.+
T Consensus 35 -------------------------------------~~l~i~G~~~~~--l~~~------------------------- 50 (135)
T PF13692_consen 35 -------------------------------------IELIIIGNGPDE--LKRL------------------------- 50 (135)
T ss_dssp -------------------------------------EEEEEECESS-H--HCCH-------------------------
T ss_pred -------------------------------------EEEEEEeCCHHH--HHHh-------------------------
Confidence 456777776651 2222
Q ss_pred CCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHH
Q 004942 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQV 682 (722)
Q Consensus 603 ~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~ 682 (722)
...+|.|+|..+++.++|+.||++++|+. ..+++|.+++|||++|+|||+++. +..++++....|.++ .+++ ++
T Consensus 51 -~~~~v~~~g~~~e~~~~l~~~dv~l~p~~-~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~-~~~~--~~ 124 (135)
T PF13692_consen 51 -RRPNVRFHGFVEELPEILAAADVGLIPSR-FNEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLV-ANDP--EE 124 (135)
T ss_dssp -HHCTEEEE-S-HHHHHHHHC-SEEEE-BS-S-SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE--TT-H--HH
T ss_pred -cCCCEEEcCCHHHHHHHHHhCCEEEEEee-CCCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEE-CCCH--HH
Confidence 12489999999899999999999999986 378999999999999999999998 677777666677777 6777 99
Q ss_pred HHHHHHHhhcC
Q 004942 683 LAQNLRYLLKN 693 (722)
Q Consensus 683 LA~aI~~LL~n 693 (722)
|+++|..+++|
T Consensus 125 l~~~i~~l~~d 135 (135)
T PF13692_consen 125 LAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHH-
T ss_pred HHHHHHHHhcC
Confidence 99999999876
No 90
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.52 E-value=8.4e-13 Score=141.12 Aligned_cols=128 Identities=23% Similarity=0.307 Sum_probs=105.4
Q ss_pred CCchhHHHHHHHHHhcCCCCCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCCh-hh
Q 004942 586 NKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT-KE 662 (722)
Q Consensus 586 n~~~Y~~el~~~l~~~~~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~-~E 662 (722)
.|+.|++.+.+.. ++++++++|.|.-.. +++-.+|..|.+-|.+.- .|.||+.+.|+||+|+-.|+.+.||. -|
T Consensus 318 eD~ervk~Lkd~a-~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~Mw--NEHFGIsVVEyMAAGlIpi~h~SgGP~lD 394 (465)
T KOG1387|consen 318 EDEERVKSLKDLA-EELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMW--NEHFGISVVEYMAAGLIPIVHNSGGPLLD 394 (465)
T ss_pred hhHHHHHHHHHHH-HhcCCccceEEEecCCHHHHHHHhccceeehhhhh--hhhcchhHHHHHhcCceEEEeCCCCCcee
Confidence 3455666665544 477999999998654 799999999999999994 99999999999999999999988776 56
Q ss_pred hhcc---CccEEEECCCCccHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 004942 663 IVEH---NVTGLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKSNGLAERHSLGRY 720 (722)
Q Consensus 663 IVe~---g~tGlLvp~~d~~~e~LA~aI~~LL~-np~~r~~mg~~grk~ve~~~~~~~~~~Y 720 (722)
||.+ ..+|++.+ +.++.|+++.++++ |++.|..|+.++|+.+.+|.+....+.|
T Consensus 395 IV~~~~G~~tGFla~----t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~~F~kd~ 452 (465)
T KOG1387|consen 395 IVTPWDGETTGFLAP----TDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGELKFDKDW 452 (465)
T ss_pred eeeccCCccceeecC----ChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHHhH
Confidence 7754 36899885 22789999999987 7788999999999999999887666554
No 91
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.51 E-value=7.4e-12 Score=133.81 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=83.0
Q ss_pred CcEEeCCch--hhHHHHHHHcCEEEEcCCC---------CCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEEC
Q 004942 606 KAMLWTPAT--TRVASLYSAADVYVINSQG---------LGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHP 674 (722)
Q Consensus 606 ~~V~f~G~~--~dv~~lysaADv~V~pS~~---------l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp 674 (722)
++|.|+|.+ ++++.+|+. |+.+++... ..-.+|.++.|+||||+|||+++.++..|+|+++.+|++++
T Consensus 207 ~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~~V~~~~~G~~v~ 285 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIADFIVENGLGFVVD 285 (333)
T ss_pred CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHHHHHHhCCceEEeC
Confidence 589999976 789999988 654443310 01367899999999999999999999999999999999998
Q ss_pred CCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHH
Q 004942 675 PGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAER 714 (722)
Q Consensus 675 ~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~ 714 (722)
+. ++++++|..+ +++.+++|++++++.++++...
T Consensus 286 --~~--~el~~~l~~~--~~~~~~~m~~n~~~~~~~~~~g 319 (333)
T PRK09814 286 --SL--EELPEIIDNI--TEEEYQEMVENVKKISKLLRNG 319 (333)
T ss_pred --CH--HHHHHHHHhc--CHHHHHHHHHHHHHHHHHHhcc
Confidence 44 7899999886 4678999999999999875433
No 92
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.45 E-value=5e-11 Score=130.55 Aligned_cols=302 Identities=15% Similarity=0.085 Sum_probs=172.6
Q ss_pred CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcE----EEEcCCc----c---------------chhhh
Q 004942 253 SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIK----VLEDRGE----P---------------SFKTS 309 (722)
Q Consensus 253 s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~----Vl~~~~~----~---------------~~~~~ 309 (722)
+.||+.+.-..||++|.+.|+++.++.... +.| ...|++ ...+... . ++.++
T Consensus 13 GgtsGhi~paal~~~l~~~~~~~~~~g~gg--~~m---~~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~~~~~~l~~ 87 (385)
T TIGR00215 13 GEASGDILGAGLRQQLKEHYPNARFIGVAG--PRM---AAEGCEVLYSMEELSVMGLREVLGRLGRLLKIRKEVVQLAKQ 87 (385)
T ss_pred CCccHHHHHHHHHHHHHhcCCCcEEEEEcc--HHH---HhCcCccccChHHhhhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777775599999999999999887432 222 222221 1111100 0 33448
Q ss_pred cCccEEEECCchhhHhHHHHHHhccCCCccEEEEE------ec-chhHhHHHHHhhhccccEEEEecHHhHHHHhhHHHh
Q 004942 310 MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWI------ME-NRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEE 382 (722)
Q Consensus 310 ~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I------~e-~r~~yf~~~k~~l~rvk~li~lS~~~~~~~~~~~~~ 382 (722)
.+||+|+....++..+.-...++. .+.+ +++++ ++ ++...+ ...++.++++++...+. +.
T Consensus 88 ~kPd~vi~~g~~~~~~~~a~aa~~-~gip-~v~~i~P~~waw~~~~~r~l------~~~~d~v~~~~~~e~~~----~~- 154 (385)
T TIGR00215 88 AKPDLLVGIDAPDFNLTKELKKKD-PGIK-IIYYISPQVWAWRKWRAKKI------EKATDFLLAILPFEKAF----YQ- 154 (385)
T ss_pred cCCCEEEEeCCCCccHHHHHHHhh-CCCC-EEEEeCCcHhhcCcchHHHH------HHHHhHhhccCCCcHHH----HH-
Confidence 899999998765545443323333 3444 44322 11 111122 22244455555443221 10
Q ss_pred hhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEE-e-cCCC-CCCHH
Q 004942 383 EKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSL-S-SINP-GKGQL 459 (722)
Q Consensus 383 ~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~v-G-ri~~-~Kg~~ 459 (722)
+.+.. +..+.|++-........ .+...|+++|++++.++|+++ | |..+ .|++.
T Consensus 155 ---~~g~~--------------~~~vGnPv~~~~~~~~~-------~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~ 210 (385)
T TIGR00215 155 ---KKNVP--------------CRFVGHPLLDAIPLYKP-------DRKSAREKLGIDHNGETLALLPGSRGSEVEKLFP 210 (385)
T ss_pred ---hcCCC--------------EEEECCchhhhccccCC-------CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHH
Confidence 01111 12344444211111000 124467889998777766655 3 6666 68999
Q ss_pred HHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCC
Q 004942 460 LLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSP 539 (722)
Q Consensus 460 ~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (722)
.++++++.+.++.|+
T Consensus 211 ~ll~a~~~l~~~~p~----------------------------------------------------------------- 225 (385)
T TIGR00215 211 LFLKAAQLLEQQEPD----------------------------------------------------------------- 225 (385)
T ss_pred HHHHHHHHHHHhCCC-----------------------------------------------------------------
Confidence 999999999776554
Q ss_pred CcccccCCCCccccCCcccceeE-EEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHH
Q 004942 540 SLFTSIGNTDAVSFGSGHLRRKV-LSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVA 618 (722)
Q Consensus 540 ~~~~~~~~~~~~~~g~~~~~~~l-li~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~ 618 (722)
.++ +..+++...+.++.+.... +....|.+.+. ++.
T Consensus 226 --------------------~~~vi~~~~~~~~~~~~~~~~~~---------------------~~~~~v~~~~~--~~~ 262 (385)
T TIGR00215 226 --------------------LRRVLPVVNFKRRLQFEQIKAEY---------------------GPDLQLHLIDG--DAR 262 (385)
T ss_pred --------------------eEEEEEeCCchhHHHHHHHHHHh---------------------CCCCcEEEECc--hHH
Confidence 122 3344554444444444222 33345655543 677
Q ss_pred HHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcC-CCCh----------------hhhhccCccEEEECCCCccHH
Q 004942 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD-AGGT----------------KEIVEHNVTGLLHPPGHPGAQ 681 (722)
Q Consensus 619 ~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd-~GG~----------------~EIVe~g~tGlLvp~~d~~~e 681 (722)
.+|++||++|++| |.+++|||+||+|+|... ..-+ +.++.+....-.+-.++.+++
T Consensus 263 ~~l~aADl~V~~S-------Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~ 335 (385)
T TIGR00215 263 KAMFAADAALLAS-------GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPH 335 (385)
T ss_pred HHHHhCCEEeecC-------CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHH
Confidence 8999999999999 567889999999998873 2222 222332221112223555669
Q ss_pred HHHHHHHHhhcCH----HHHHHHHHHHHHHHHhh
Q 004942 682 VLAQNLRYLLKNP----SVRERMAMEGRKKSNGL 711 (722)
Q Consensus 682 ~LA~aI~~LL~np----~~r~~mg~~grk~ve~~ 711 (722)
.+++.+.++++|+ +.+++|.+...+..+.+
T Consensus 336 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 369 (385)
T TIGR00215 336 PLAIALLLLLENGLKAYKEMHRERQFFEELRQRI 369 (385)
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 99999888777766655
No 93
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.44 E-value=1.2e-12 Score=148.97 Aligned_cols=106 Identities=18% Similarity=0.208 Sum_probs=100.0
Q ss_pred CcEEeCCchh--hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHH
Q 004942 606 KAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVL 683 (722)
Q Consensus 606 ~~V~f~G~~~--dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~L 683 (722)
..|.|.|.+. ++.+.|..+.++|.+|. .|+|+ ..+||+++|+|+| .-|..++|.|+.+|+++ +|. ++|
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl~id~s~--~eg~~-~~ieAiS~GiPqI---nyg~~~~V~d~~NG~li--~d~--~~l 478 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRLIIDLSK--EPDLY-TQISGISAGIPQI---NKVETDYVEHNKNGYII--DDI--SEL 478 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheEEEECCC--CCChH-HHHHHHHcCCCee---ecCCceeeEcCCCcEEe--CCH--HHH
Confidence 6899999887 99999999999999998 99999 9999999999999 55679999999999999 666 999
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 684 AQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 684 A~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
+++|..+|.++..++++...+.+.+++|+...++++|.
T Consensus 479 ~~al~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW~ 516 (519)
T TIGR03713 479 LKALDYYLDNLKNWNYSLAYSIKLIDDYSSENIIERLN 516 (519)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999998885
No 94
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.2e-09 Score=114.15 Aligned_cols=176 Identities=21% Similarity=0.242 Sum_probs=138.5
Q ss_pred CCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccc
Q 004942 439 LTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNEL 518 (722)
Q Consensus 439 l~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~ 518 (722)
++..+.++++..+..|..++..|++|+...-++...
T Consensus 251 ~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~-------------------------------------------- 286 (444)
T KOG2941|consen 251 LPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYD-------------------------------------------- 286 (444)
T ss_pred ccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhh--------------------------------------------
Confidence 445567888888999999999999999877554333
Q ss_pred cccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHH
Q 004942 519 SVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFL 598 (722)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l 598 (722)
.++...+.=++|-|+||+++.....|...
T Consensus 287 ----------------------------------~~~~lP~llciITGKGPlkE~Y~~~I~~~----------------- 315 (444)
T KOG2941|consen 287 ----------------------------------KTHNLPSLLCIITGKGPLKEKYSQEIHEK----------------- 315 (444)
T ss_pred ----------------------------------ccCCCCcEEEEEcCCCchhHHHHHHHHHh-----------------
Confidence 11222334568889999998888777533
Q ss_pred HhcCCCCCcEEeCC---chhhHHHHHHHcCEEEE--cCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEE
Q 004942 599 SQHSNLSKAMLWTP---ATTRVASLYSAADVYVI--NSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLH 673 (722)
Q Consensus 599 ~~~~~L~~~V~f~G---~~~dv~~lysaADv~V~--pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLv 673 (722)
++. +|.+.. ..+|.+.++..||+-|+ +|.+ +-..||.++.-+.||+||++-+...+.|+|+|+++|+++
T Consensus 316 ----~~~-~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSS-GLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF 389 (444)
T KOG2941|consen 316 ----NLQ-HVQVCTPWLEAEDYPKLLASADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLVF 389 (444)
T ss_pred ----ccc-ceeeeecccccccchhHhhccccceEeeecCc-ccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCceEe
Confidence 443 333332 45899999999998665 4542 677899999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 004942 674 PPGHPGAQVLAQNLRYLLK----NPSVRERMAMEGRKKSNGLAERHSLGRY 720 (722)
Q Consensus 674 p~~d~~~e~LA~aI~~LL~----np~~r~~mg~~grk~ve~~~~~~~~~~Y 720 (722)
. |. ++||+.+..+++ |.+...++.++.++. +++.|+.+|++-
T Consensus 390 ~--Ds--~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~-~e~RW~~~W~~~ 435 (444)
T KOG2941|consen 390 E--DS--EELAEQLQMLFKNFPDNADELNQLKKNLREE-QELRWDESWERT 435 (444)
T ss_pred c--cH--HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH-HhhhHHHHHHHh
Confidence 7 33 889999999998 889999998888887 568888888764
No 95
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.25 E-value=4.6e-11 Score=104.34 Aligned_cols=90 Identities=29% Similarity=0.402 Sum_probs=82.6
Q ss_pred EEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 004942 627 YVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRK 706 (722)
Q Consensus 627 ~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk 706 (722)
++.++. ..++++.++|+||||+|||+++.+++.+++.++.+++.++ ++ ++|.++|.++++||+.+++++++|++
T Consensus 2 ~Ln~~~--~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~--~~--~el~~~i~~ll~~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 2 NLNPSR--SDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYN--DP--EELAEKIEYLLENPEERRRIAKNARE 75 (92)
T ss_pred EeeCCC--CCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEEC--CH--HHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 456665 6899999999999999999999999999999998999988 55 89999999999999999999999999
Q ss_pred HHH-hhcHHHHHHHHHC
Q 004942 707 KSN-GLAERHSLGRYCN 722 (722)
Q Consensus 707 ~ve-~~~~~~~~~~Y~~ 722 (722)
.++ +|++++.++++++
T Consensus 76 ~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 76 RVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHhCCHHHHHHHHHC
Confidence 997 5999999998864
No 96
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.15 E-value=2e-09 Score=124.84 Aligned_cols=182 Identities=14% Similarity=0.102 Sum_probs=135.1
Q ss_pred CCCCCEEEEEEecCCCCCCHHHHHHHHHHhHH--hCCCCcchhhhhccccccccCcccccccccccccccccccccCccc
Q 004942 439 LTDQDMLVLSLSSINPGKGQLLLVESAQLMIE--QEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSN 516 (722)
Q Consensus 439 l~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~ 516 (722)
+.++.+++++++|+...||++++++++..+.+ +.|.
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~------------------------------------------ 422 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRADLIFRDLERLARILNNPE------------------------------------------ 422 (601)
T ss_pred cCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCC------------------------------------------
Confidence 34567899999999999999999999998864 2121
Q ss_pred cccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhH----HHHHHhhhccCCCCCCchhHH
Q 004942 517 ELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQ----QALKILIGSVGSKSNKVPYVK 592 (722)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~----~~Lk~lI~~~Gs~sn~~~Y~~ 592 (722)
..+++++.|.|... +++...+
T Consensus 423 -----------------------------------------~pvq~V~~Gka~p~d~~gk~~i~~i-------------- 447 (601)
T TIGR02094 423 -----------------------------------------RPVQIVFAGKAHPADGEGKEIIQRI-------------- 447 (601)
T ss_pred -----------------------------------------CCeEEEEEEecCcccchHHHHHHHH--------------
Confidence 12578888888643 2222222
Q ss_pred HHHHHHHhcCCCCCcEEeCC-chhh-HHHHHHHcCEEEE-cCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCcc
Q 004942 593 EILEFLSQHSNLSKAMLWTP-ATTR-VASLYSAADVYVI-NSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVT 669 (722)
Q Consensus 593 el~~~l~~~~~L~~~V~f~G-~~~d-v~~lysaADv~V~-pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~t 669 (722)
..+++.+..+++|.|+- +-.. -..++++||++++ ||++ .|++|+.-+=||..|.+.+++--|...|.. ++.|
T Consensus 448 ---~~la~~~~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~-~EacGtsqMka~~nGgL~~sv~DG~~~E~~-~~~n 522 (601)
T TIGR02094 448 ---VEFSKRPEFRGRIVFLENYDINLARYLVSGVDVWLNNPRRP-LEASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDN 522 (601)
T ss_pred ---HHHHhcccCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCCC-cCCchHHHHHHHHcCCceeecccCcccccC-CCCc
Confidence 23444545677888764 4433 5578888999999 8875 899999999999999999999888888877 5679
Q ss_pred EEEECC----------CCccHHHHHHHHHHhh-----cC-----HHHHHHHHHHHHHHH-HhhcHHHHHHHHHC
Q 004942 670 GLLHPP----------GHPGAQVLAQNLRYLL-----KN-----PSVRERMAMEGRKKS-NGLAERHSLGRYCN 722 (722)
Q Consensus 670 GlLvp~----------~d~~~e~LA~aI~~LL-----~n-----p~~r~~mg~~grk~v-e~~~~~~~~~~Y~~ 722 (722)
|+.+.. ++.++++|.++|++.+ ++ |..|.+|.+++.+.. ..|+|+.++.+|.+
T Consensus 523 Gf~f~~~~~~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~ 596 (601)
T TIGR02094 523 GWAIGDGEEYDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVD 596 (601)
T ss_pred EEEECCCccccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 999984 1233488999887655 33 566888888877754 46999999999963
No 97
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.03 E-value=1.2e-08 Score=115.53 Aligned_cols=261 Identities=16% Similarity=0.215 Sum_probs=150.4
Q ss_pred ccEEEEecHHhHHHHhhHHHhh-hhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCC
Q 004942 362 VKLLVFLSESQTKQWLTWCEEE-KLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLT 440 (722)
Q Consensus 362 vk~li~lS~~~~~~~~~~~~~~-~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~ 440 (722)
.+.+-|.+......++..|... +........ -+..+.....|.+.|-|||++.|......+.-.-....++++++
T Consensus 198 aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~--~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~-- 273 (474)
T PF00982_consen 198 ADLIGFQTFEYARNFLSCCKRLLGLEVDSDRG--TVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFK-- 273 (474)
T ss_dssp SSEEEESSHHHHHHHHHHHHHHS-EEEEETTE---EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTT--
T ss_pred CCEEEEecHHHHHHHHHHHHHHcCCcccCCCc--eEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcC--
Confidence 7778888888777788888543 111111110 12223444467899999998877543221111112356777764
Q ss_pred CCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccc
Q 004942 441 DQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSV 520 (722)
Q Consensus 441 ~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~ 520 (722)
++..+|+.+.|++..||+..=++|+..+.++.|.. +|+..+ ++.+.|+..
T Consensus 274 ~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~------------------------~~kv~l--iQi~~psr~---- 323 (474)
T PF00982_consen 274 GKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEY------------------------RGKVVL--IQIAVPSRE---- 323 (474)
T ss_dssp T-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGG------------------------TTTEEE--EEE--B-ST----
T ss_pred CCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCc------------------------cCcEEE--EEEeeccCc----
Confidence 23479999999999999999999999999999871 111111 111111111
Q ss_pred cchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHh
Q 004942 521 SSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQ 600 (722)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~ 600 (722)
+.++.++++.-+ .++...+..
T Consensus 324 ----------------------------------------------~~~~y~~~~~~v-------------~~~v~~IN~ 344 (474)
T PF00982_consen 324 ----------------------------------------------DVPEYQELRREV-------------EELVGRING 344 (474)
T ss_dssp ----------------------------------------------TSHHHHHHHHHH-------------HHHHHHHHH
T ss_pred ----------------------------------------------cchhHHHHHHHH-------------HHHHHHHHh
Confidence 122223333322 222233333
Q ss_pred cCCCCC--cEEeC-C--chhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCC----EEEcCCCChhhhhccCccEE
Q 004942 601 HSNLSK--AMLWT-P--ATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP----VLGTDAGGTKEIVEHNVTGL 671 (722)
Q Consensus 601 ~~~L~~--~V~f~-G--~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlP----VVaTd~GG~~EIVe~g~tGl 671 (722)
.++-.+ -|.++ + ..+++..+|+.|||++++|. .+|+-++..|+.+|..+ +|.|...|..+.+.++ .+
T Consensus 345 ~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTsl--rDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~~--al 420 (474)
T PF00982_consen 345 KYGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSL--RDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSEA--AL 420 (474)
T ss_dssp HH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--S--SBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-TTS---E
T ss_pred hcccCCceeEEEEecCCCHHHHHHHHHhhhhEEecch--hhccCCcceEEEEEecCCCCceEeeccCCHHHHcCCc--cE
Confidence 334332 23433 3 23789999999999999995 99999999999999775 6777777788877642 48
Q ss_pred EECCCCccHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 672 LHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 672 Lvp~~d~~~e~LA~aI~~LL~-np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
+++|-|. +++|++|...|+ .+++|+..-+..++.+.+++...+++.+.
T Consensus 421 ~VNP~d~--~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~~~~~~W~~~~l 469 (474)
T PF00982_consen 421 LVNPWDI--EEVADAIHEALTMPPEERKERHARLREYVREHDVQWWAESFL 469 (474)
T ss_dssp EE-TT-H--HHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT-HHHHHHHHH
T ss_pred EECCCCh--HHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhCCHHHHHHHHH
Confidence 9999999 999999999999 66788888888899999888888777664
No 98
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.03 E-value=8.3e-08 Score=104.37 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=63.7
Q ss_pred EeCCch-hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCC-----C----hhhhhccCccEEEECCCCc
Q 004942 609 LWTPAT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG-----G----TKEIVEHNVTGLLHPPGHP 678 (722)
Q Consensus 609 ~f~G~~-~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~G-----G----~~EIVe~g~tGlLvp~~d~ 678 (722)
...++. ++++++|.+||++|.-+ -++++.|++++|+|.|..... + ..+.+.+...|..+...+.
T Consensus 237 ~~~~f~~~~m~~~~~~adlvIsr~------G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~ 310 (352)
T PRK12446 237 RQFEYVHGELPDILAITDFVISRA------GSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDV 310 (352)
T ss_pred EEecchhhhHHHHHHhCCEEEECC------ChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcC
Confidence 344776 68999999999999554 467899999999999987432 2 1224444456677766666
Q ss_pred cHHHHHHHHHHhhcCHHHHHH
Q 004942 679 GAQVLAQNLRYLLKNPSVRER 699 (722)
Q Consensus 679 ~~e~LA~aI~~LL~np~~r~~ 699 (722)
+++.|++++..+++|++.+++
T Consensus 311 ~~~~l~~~l~~ll~~~~~~~~ 331 (352)
T PRK12446 311 TVNSLIKHVEELSHNNEKYKT 331 (352)
T ss_pred CHHHHHHHHHHHHcCHHHHHH
Confidence 679999999999999876543
No 99
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.96 E-value=4.1e-08 Score=110.21 Aligned_cols=98 Identities=18% Similarity=0.366 Sum_probs=84.5
Q ss_pred CCcEEeCCchh-hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCC-ChhhhhccCccEEEECCCCccHHH
Q 004942 605 SKAMLWTPATT-RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG-GTKEIVEHNVTGLLHPPGHPGAQV 682 (722)
Q Consensus 605 ~~~V~f~G~~~-dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~G-G~~EIVe~g~tGlLvp~~d~~~e~ 682 (722)
++.+++.|.+. ++.++|..||+|+-.|. +|++++++.|||+.|+||++.+.. |..+++.+ |.+++.+++ ++
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~--~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~--~~ 400 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINH--GNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNEV--DQ 400 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccc--cccHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCCH--HH
Confidence 67788888776 99999999999999998 999999999999999999998863 56677775 889999999 99
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 004942 683 LAQNLRYLLKNPSVRERMAMEGRKKSN 709 (722)
Q Consensus 683 LA~aI~~LL~np~~r~~mg~~grk~ve 709 (722)
|+++|..+|.||+.+++.-..-++.+.
T Consensus 401 m~~~i~~lL~d~~~~~~~~~~q~~~a~ 427 (438)
T TIGR02919 401 LISKLKDLLNDPNQFRELLEQQREHAN 427 (438)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 999999999999877665555555443
No 100
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.94 E-value=3.1e-07 Score=100.76 Aligned_cols=106 Identities=23% Similarity=0.230 Sum_probs=86.8
Q ss_pred EEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC-CC-------hhhhhccCccEEEECCCCcc
Q 004942 608 MLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GG-------TKEIVEHNVTGLLHPPGHPG 679 (722)
Q Consensus 608 V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~-GG-------~~EIVe~g~tGlLvp~~d~~ 679 (722)
+...++.+++..+|++||++|.=+ -++++.|..++|+|+|--.. .+ ....+++...|.+++..+.+
T Consensus 237 ~~v~~f~~dm~~~~~~ADLvIsRa------Ga~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt 310 (357)
T COG0707 237 VRVLPFIDDMAALLAAADLVISRA------GALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELT 310 (357)
T ss_pred EEEeeHHhhHHHHHHhccEEEeCC------cccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCC
Confidence 888999999999999999999554 46899999999999988654 33 23355556678888888877
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 004942 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGR 719 (722)
Q Consensus 680 ~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~ 719 (722)
++.+++.|..++.+|+..++|.+++++....-..+.+++.
T Consensus 311 ~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~p~aa~~i~~~ 350 (357)
T COG0707 311 PEKLAELILRLLSNPEKLKAMAENAKKLGKPDAAERIADL 350 (357)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 7999999999999999999999999988765555555443
No 101
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.91 E-value=1.4e-08 Score=114.52 Aligned_cols=257 Identities=12% Similarity=0.076 Sum_probs=167.3
Q ss_pred ccEEEEecHHhHHHHhhHHHhhhhhccCCC-cccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCC
Q 004942 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQP-AVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLT 440 (722)
Q Consensus 362 vk~li~lS~~~~~~~~~~~~~~~i~l~~~~-~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~ 440 (722)
.+.+-|.+......++..|... ++... .-.-+........|.++|-|||++.|........ .-....+|+.++
T Consensus 180 aDlIGFqt~~y~rnFl~~~~~~---lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~-~~~~~~lr~~~~-- 253 (474)
T PRK10117 180 YDLLGFQTENDRLAFLDCLSNL---TRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPL-PPKLAQLKAELK-- 253 (474)
T ss_pred CccceeCCHHHHHHHHHHHHHH---cCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchH-HHHHHHHHHHcC--
Confidence 5667777777666677777532 11111 0000111223345788999999888754221111 111355677765
Q ss_pred CCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccc
Q 004942 441 DQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSV 520 (722)
Q Consensus 441 ~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~ 520 (722)
+..+|+.+.|++..||+..=++|+..+.++.|+. +|+..+ ++++.|++..
T Consensus 254 -~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~------------------------~gkvvl--vQia~psR~~--- 303 (474)
T PRK10117 254 -NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQH------------------------HGKIRY--TQIAPTSRGD--- 303 (474)
T ss_pred -CCeEEEEecccccccCHHHHHHHHHHHHHhChhh------------------------cCCEEE--EEEcCCCCCc---
Confidence 4669999999999999999999999999999972 222211 1222222221
Q ss_pred cchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHh
Q 004942 521 SSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQ 600 (722)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~ 600 (722)
.++.++++.-+ +++...+-.
T Consensus 304 -----------------------------------------------v~~Y~~l~~~v-------------~~~vg~INg 323 (474)
T PRK10117 304 -----------------------------------------------VQAYQDIRHQL-------------ETEAGRING 323 (474)
T ss_pred -----------------------------------------------cHHHHHHHHHH-------------HHHHHHHHh
Confidence 12222222222 122222333
Q ss_pred cCCCCC--cEEeCC---chhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCC-----EEEcCCCChhhhhccCccE
Q 004942 601 HSNLSK--AMLWTP---ATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP-----VLGTDAGGTKEIVEHNVTG 670 (722)
Q Consensus 601 ~~~L~~--~V~f~G---~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlP-----VVaTd~GG~~EIVe~g~tG 670 (722)
.++-.+ -|.++. ..+++..+|..|||.+++|. .+|+-+|..|+.||..| .|.|...|..+.+. ..
T Consensus 324 ~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTpl--RDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~---~A 398 (474)
T PRK10117 324 KYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPL--RDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SA 398 (474)
T ss_pred ccCCCCceeEEEecCCCCHHHHHHHHHhccEEEeccc--ccccccccchheeeecCCCCccEEEecccchHHHhC---CC
Confidence 333322 244443 23678899999999999995 99999999999999762 67787777777775 37
Q ss_pred EEECCCCccHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 671 LLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 671 lLvp~~d~~~e~LA~aI~~LL~-np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
++++|-|. +.+|++|...|+ .+++|++..+..++.+.+++...+++.+.
T Consensus 399 llVNP~d~--~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~fL 448 (474)
T PRK10117 399 LIVNPYDR--DEVAAALDRALTMPLAERISRHAEMLDVIVKNDINHWQECFI 448 (474)
T ss_pred eEECCCCH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhCCHHHHHHHHH
Confidence 89999999 999999999999 56778887888888898888777777654
No 102
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.86 E-value=4.2e-07 Score=109.41 Aligned_cols=262 Identities=10% Similarity=0.109 Sum_probs=168.5
Q ss_pred ccEEEEecHHhHHHHhhHHHhhhhhccCCCc--ccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCC
Q 004942 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPA--VVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGL 439 (722)
Q Consensus 362 vk~li~lS~~~~~~~~~~~~~~~i~l~~~~~--vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl 439 (722)
.+.+-|.+..-...++..|... ..+.+... .+-+........|.++|-|||...|........-+.....++++++-
T Consensus 258 aDlIGFht~~yar~Fl~~~~r~-lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~ 336 (854)
T PLN02205 258 SDLIGFHTFDYARHFLSCCSRM-LGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCD 336 (854)
T ss_pred CCeEEecCHHHHHHHHHHHHHH-hCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhcc
Confidence 6778888877766688877542 11111110 01111123334568899999988764321100000112456666653
Q ss_pred CCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCcccccc
Q 004942 440 TDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELS 519 (722)
Q Consensus 440 ~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~ 519 (722)
.+..+|+.+.|+...||+..=++|+..+.+++|.. +|+..+ ++++.|++.
T Consensus 337 -~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~------------------------~gkvvl--vQia~psr~--- 386 (854)
T PLN02205 337 -QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEW------------------------QGKVVL--VQIANPARG--- 386 (854)
T ss_pred -CCCEEEEEccCcccccCHHHHHHHHHHHHHhCccc------------------------cCCEEE--EEEecCCCc---
Confidence 24679999999999999999999999999999982 222221 122222222
Q ss_pred ccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHH
Q 004942 520 VSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLS 599 (722)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~ 599 (722)
++++.++++.-+ .++...|-
T Consensus 387 -----------------------------------------------~~~~y~~~~~ev-------------~~~v~rIN 406 (854)
T PLN02205 387 -----------------------------------------------KGKDVKEVQAET-------------HSTVKRIN 406 (854)
T ss_pred -----------------------------------------------ccHHHHHHHHHH-------------HHHHHHHH
Confidence 234444444333 22333333
Q ss_pred hcCCCCC--cEEeCC---chhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCC-------------------CEEEc
Q 004942 600 QHSNLSK--AMLWTP---ATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV-------------------PVLGT 655 (722)
Q Consensus 600 ~~~~L~~--~V~f~G---~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~Gl-------------------PVVaT 655 (722)
..++-.+ -|.++. ..+++..+|+.|||+++++. .+||-+|..|+.+|.. .+|.|
T Consensus 407 ~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~l--RDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLS 484 (854)
T PLN02205 407 ETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAV--RDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVS 484 (854)
T ss_pred hhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccc--cccccccchheeEEccCccccccccccccccCCCCceEee
Confidence 3434322 355553 23789999999999999995 9999999999999864 25667
Q ss_pred CCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 656 DAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 656 d~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~-np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
..-|+...+. ..++++|-|. +++|++|...|. .+++++..-+..++.+..++...+++.+.
T Consensus 485 EfaGaa~~L~---~Ai~VNP~d~--~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~~d~~~W~~~fl 546 (854)
T PLN02205 485 EFIGCSPSLS---GAIRVNPWNI--DAVADAMDSALEMAEPEKQLRHEKHYRYVSTHDVGYWARSFL 546 (854)
T ss_pred eccchhHHhC---cCeEECCCCH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 7666666554 2689999999 999999999999 44566666667788888777777766653
No 103
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.80 E-value=4.8e-06 Score=92.39 Aligned_cols=334 Identities=17% Similarity=0.196 Sum_probs=203.3
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHhC--CCEEEEEEEcCCCC-ChhHHHhCCcEEEEcCCcc-----chhhhcCccEEEE
Q 004942 246 ILIFHELSMTGAPLSMMELATELLSC--GATVSAVVLSKRGG-LMPELARRKIKVLEDRGEP-----SFKTSMKADLVIA 317 (722)
Q Consensus 246 llI~hels~gGaplsm~eLA~eL~s~--G~~VsvV~ls~~g~-l~~el~~~gI~Vl~~~~~~-----~~~~~~k~DlVia 317 (722)
++-+|.-|.| --+.+..|.++|.+. +..+.+.+....|. ...++-...+.+..++-+. +|.+..+||++|.
T Consensus 51 ~vWiHaaSVG-Ev~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii 129 (419)
T COG1519 51 LVWIHAASVG-EVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLII 129 (419)
T ss_pred eEEEEecchh-HHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCchHHHHHHHHhcCCCEEEE
Confidence 4446765554 456678899999987 66666666333321 2222223337777777766 6777899999966
Q ss_pred CCchhhHhHHHHHHhccCCCccEEEEEecchh---Hh--HHH-HHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCC
Q 004942 318 GSAVCATWIDQYITRFPAGGSQVVWWIMENRR---EY--FDR-AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQP 391 (722)
Q Consensus 318 ~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~---~y--f~~-~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~ 391 (722)
-=. -.|..-.......+.+.++------.+ .| +.. .+..+..+..++..|+.+.+. . ..++..+
T Consensus 130 ~Et--ElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~R----f----~~LGa~~ 199 (419)
T COG1519 130 MET--ELWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQR----F----RSLGAKP 199 (419)
T ss_pred Eec--cccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHH----H----HhcCCcc
Confidence 532 235554444445555543321100001 11 111 234456688888888887443 2 2355543
Q ss_pred cccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHh
Q 004942 392 AVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQ 471 (722)
Q Consensus 392 ~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~ 471 (722)
|.+..| +....-.+.... ...+.+|..++.+ ..+++..|. ....-+.++++++.+.++
T Consensus 200 -------------v~v~GN-lKfd~~~~~~~~----~~~~~~r~~l~~~--r~v~iaaST--H~GEeei~l~~~~~l~~~ 257 (419)
T COG1519 200 -------------VVVTGN-LKFDIEPPPQLA----AELAALRRQLGGH--RPVWVAAST--HEGEEEIILDAHQALKKQ 257 (419)
T ss_pred -------------eEEecc-eeecCCCChhhH----HHHHHHHHhcCCC--CceEEEecC--CCchHHHHHHHHHHHHhh
Confidence 111111 211111111111 1347788888775 456777776 344456799999999999
Q ss_pred CCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCcc
Q 004942 472 EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAV 551 (722)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (722)
.|+
T Consensus 258 ~~~----------------------------------------------------------------------------- 260 (419)
T COG1519 258 FPN----------------------------------------------------------------------------- 260 (419)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 887
Q ss_pred ccCCcccceeEEEcCCchhH-HHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHHcCEEEEc
Q 004942 552 SFGSGHLRRKVLSKSDGKQQ-QALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVIN 630 (722)
Q Consensus 552 ~~g~~~~~~~lli~G~G~~~-~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysaADv~V~p 630 (722)
..++++-..|++ +.+..++...|-+.. ..- .. +-...+.+|.+....-++..+|..||+.++-
T Consensus 261 --------~llIlVPRHpERf~~v~~l~~~~gl~~~-----~rS--~~-~~~~~~tdV~l~DtmGEL~l~y~~adiAFVG 324 (419)
T COG1519 261 --------LLLILVPRHPERFKAVENLLKRKGLSVT-----RRS--QG-DPPFSDTDVLLGDTMGELGLLYGIADIAFVG 324 (419)
T ss_pred --------ceEEEecCChhhHHHHHHHHHHcCCeEE-----eec--CC-CCCCCCCcEEEEecHhHHHHHHhhccEEEEC
Confidence 246677777776 677777766652110 000 00 0012234676666778999999999996654
Q ss_pred CCCCCCCccHHHHHHHHhCCCEEEcCC-CChhhh---hccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 004942 631 SQGLGETFGRVTIEAMAFGVPVLGTDA-GGTKEI---VEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRK 706 (722)
Q Consensus 631 S~~l~EgfglviLEAMA~GlPVVaTd~-GG~~EI---Ve~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk 706 (722)
-. +.+--|--++|+.++|+|||.-.. -...|+ +.+...|+.++. . +.|+.++..++.|++.|++|+.++.+
T Consensus 325 GS-lv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~--~--~~l~~~v~~l~~~~~~r~~~~~~~~~ 399 (419)
T COG1519 325 GS-LVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVED--A--DLLAKAVELLLADEDKREAYGRAGLE 399 (419)
T ss_pred Cc-ccCCCCCChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEECC--H--HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 32 355556689999999999998643 344444 444456666663 4 78999999999999999999999999
Q ss_pred HHHh
Q 004942 707 KSNG 710 (722)
Q Consensus 707 ~ve~ 710 (722)
.+.+
T Consensus 400 ~v~~ 403 (419)
T COG1519 400 FLAQ 403 (419)
T ss_pred HHHH
Confidence 9865
No 104
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=98.73 E-value=2.7e-07 Score=109.81 Aligned_cols=188 Identities=15% Similarity=0.099 Sum_probs=137.5
Q ss_pred CCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccc
Q 004942 439 LTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNEL 518 (722)
Q Consensus 439 l~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~ 518 (722)
+.++.++|+++.|+...|+++++++.+..+.+-..+.
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~------------------------------------------- 510 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDP------------------------------------------- 510 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCC-------------------------------------------
Confidence 4456678999999999999999999988885421110
Q ss_pred cccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHH-HHhhhccCCCCCCchhHHHHHHH
Q 004942 519 SVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQAL-KILIGSVGSKSNKVPYVKEILEF 597 (722)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~L-k~lI~~~Gs~sn~~~Y~~el~~~ 597 (722)
...+++++.|+|.-...- |.+| +.+. .
T Consensus 511 --------------------------------------~~pvQ~IfaGKAhP~d~~gK~iI-------------k~i~-~ 538 (778)
T cd04299 511 --------------------------------------ERPVQFIFAGKAHPADEPGKELI-------------QEIV-E 538 (778)
T ss_pred --------------------------------------CCCeEEEEEEecCccchHHHHHH-------------HHHH-H
Confidence 022678899998643332 3333 2332 3
Q ss_pred HHhcCCCCCcEEeCC-ch-hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECC
Q 004942 598 LSQHSNLSKAMLWTP-AT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPP 675 (722)
Q Consensus 598 l~~~~~L~~~V~f~G-~~-~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~ 675 (722)
+++.+...++|.|+. +- +--..+++.||+.+.||+--.|++|+.=+=||.-|.+-+++-=|...|.. ++.+|+.++.
T Consensus 539 ~a~~p~~~~kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~ 617 (778)
T cd04299 539 FSRRPEFRGRIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGD 617 (778)
T ss_pred HHhCcCCCCcEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCC
Confidence 345556777888875 33 33557888899999999744899999999999999999999889888887 6789999987
Q ss_pred CC----------ccHHHHHHHHHHh-h----c-----CHHHHHHHHHHHHHHH-HhhcHHHHHHHHHC
Q 004942 676 GH----------PGAQVLAQNLRYL-L----K-----NPSVRERMAMEGRKKS-NGLAERHSLGRYCN 722 (722)
Q Consensus 676 ~d----------~~~e~LA~aI~~L-L----~-----np~~r~~mg~~grk~v-e~~~~~~~~~~Y~~ 722 (722)
+. .++++|.+.|++- + + .|..|.+|.+++.+.+ -.|++..++.+|.+
T Consensus 618 ~~~~~~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~ 685 (778)
T cd04299 618 GDEYEDDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVE 685 (778)
T ss_pred CccccChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 32 3347777777553 2 2 2777888888877765 45999999999963
No 105
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.69 E-value=1.6e-06 Score=91.41 Aligned_cols=76 Identities=21% Similarity=0.200 Sum_probs=56.5
Q ss_pred EEEEEeCCC-CCCcHHHH-HHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc----------chhhhcC
Q 004942 244 KFILIFHEL-SMTGAPLS-MMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP----------SFKTSMK 311 (722)
Q Consensus 244 killI~hel-s~gGapls-m~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~----------~~~~~~k 311 (722)
||++..+.. .+|.+.++ ++.||++|.+.|++|..++-...+.+.+.+...|.+|+.++... .+..+.+
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~ 80 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEK 80 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcC
Confidence 355555544 56666666 89999999999999999995555555677889999998775532 3344679
Q ss_pred ccEEEECC
Q 004942 312 ADLVIAGS 319 (722)
Q Consensus 312 ~DlVia~S 319 (722)
||+|++-+
T Consensus 81 ~d~vV~D~ 88 (279)
T TIGR03590 81 FDILIVDH 88 (279)
T ss_pred CCEEEEcC
Confidence 99998876
No 106
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.69 E-value=1.7e-07 Score=87.32 Aligned_cols=144 Identities=15% Similarity=0.096 Sum_probs=75.4
Q ss_pred EeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcC----Ccc-----------chhhhcCc
Q 004942 248 IFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDR----GEP-----------SFKTSMKA 312 (722)
Q Consensus 248 I~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~----~~~-----------~~~~~~k~ 312 (722)
..+....||++..+.+|+++|.+.||+|++++....+....+ ......... ... ++.++.+|
T Consensus 5 ~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (177)
T PF13439_consen 5 NIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE---LVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEKP 81 (177)
T ss_dssp CC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST---EEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT-
T ss_pred EecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh---ccceeeeeecccccccchhHHHHHHHHHHHHHcCC
Confidence 344458999999999999999999999999996655544333 000111100 000 33446799
Q ss_pred cEEEECCchhhHhHHHHHHhccCCCccEEEEEecchh------------HhHHH--HHhhhccccEEEEecHHhHHHHhh
Q 004942 313 DLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR------------EYFDR--AKLVLDRVKLLVFLSESQTKQWLT 378 (722)
Q Consensus 313 DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~------------~yf~~--~k~~l~rvk~li~lS~~~~~~~~~ 378 (722)
|+||++......+...... ..++++.+|..-. .++.. ......+++.++++|+...+.
T Consensus 82 DiVh~~~~~~~~~~~~~~~-----~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~--- 153 (177)
T PF13439_consen 82 DIVHIHGPPAFWIALLACR-----KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDE--- 153 (177)
T ss_dssp SEEECCTTHCCCHHHHHHH-----CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHH---
T ss_pred CeEEecccchhHHHHHhcc-----CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHH---
Confidence 9998887554333322222 3347777764330 11111 112245689999999997543
Q ss_pred HHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCC
Q 004942 379 WCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSS 418 (722)
Q Consensus 379 ~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~ 418 (722)
. .+.+..+ ..+.+||||+|++.|.
T Consensus 154 -l----~~~~~~~-----------~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 154 -L----IKFGIPP-----------EKIHVIYNGIDTDRFR 177 (177)
T ss_dssp -H----HHHT--S-----------S-EEE----B-CCCH-
T ss_pred -H----HHhCCcc-----------cCCEEEECCccHHHcC
Confidence 2 1122222 2359999999998873
No 107
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=98.66 E-value=1.6e-06 Score=99.71 Aligned_cols=128 Identities=19% Similarity=0.187 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCCCCC------cEEeCCch---------hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc
Q 004942 591 VKEILEFLSQHSNLSK------AMLWTPAT---------TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT 655 (722)
Q Consensus 591 ~~el~~~l~~~~~L~~------~V~f~G~~---------~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT 655 (722)
.+.+++.+.+. +|.+ .|.|++.- -+..+++..||+.|+||. +|++|.+-+|+.|+|+|.|+|
T Consensus 423 ~DpILn~irr~-~L~N~~~drVKVIF~P~yL~~~dgif~l~Y~dfv~GcdLgvFPSY--YEPWGYTPlE~~a~gVPsITT 499 (633)
T PF05693_consen 423 NDPILNMIRRL-GLFNNPEDRVKVIFHPEYLSGTDGIFNLDYYDFVRGCDLGVFPSY--YEPWGYTPLECTAFGVPSITT 499 (633)
T ss_dssp T-HHHHHHHHT-T----TT-SEEEEE--S---TTSSSS-S-HHHHHHHSSEEEE--S--SBSS-HHHHHHHHTT--EEEE
T ss_pred cCHHHHHHHhC-CCCCCCCCceEEEEeeccccCCCCCCCCCHHHHhccCceeeeccc--cccccCChHHHhhcCCceeec
Confidence 34566666544 5532 47787732 358999999999999998 999999999999999999999
Q ss_pred CCCChhhhhcc-----CccEEEE-CCCCccH----HHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 656 DAGGTKEIVEH-----NVTGLLH-PPGHPGA----QVLAQNLRYLLK-NPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 656 d~GG~~EIVe~-----g~tGlLv-p~~d~~~----e~LA~aI~~LL~-np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
|..|.--.+.+ ...|+.+ +-.+.+. ++|++.|..... ++..|..++.++.+.++.+.|++....|.
T Consensus 500 nLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~ 576 (633)
T PF05693_consen 500 NLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLADWKNFGKYYE 576 (633)
T ss_dssp TTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHCHHHH
T ss_pred cchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99888765543 3456544 4333333 555555555554 77788999999999889999999877774
No 108
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=4.8e-06 Score=94.46 Aligned_cols=258 Identities=16% Similarity=0.204 Sum_probs=163.5
Q ss_pred ccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCC
Q 004942 362 VKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD 441 (722)
Q Consensus 362 vk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~ 441 (722)
.+.+-|..++-...+...|....-.... ..+..-+..+....|..+|-|+|.+.|........-+.--.+++++++-
T Consensus 204 ~dligFqt~~y~~nF~~~~~r~~~~~~~-~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~~-- 280 (486)
T COG0380 204 ADLIGFQTESYARNFLDLCSRLLGVTGD-ADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELGR-- 280 (486)
T ss_pred CCeeEecCHHHHHHHHHHHHHhcccccc-ccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhcC--
Confidence 6778888887766677777543110000 0000000123345678899999988774322100000012445555543
Q ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCcccccccc
Q 004942 442 QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVS 521 (722)
Q Consensus 442 ~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~ 521 (722)
+..+|+.+-|+...||+..=+.|+..+.+++|.. +|...+ .+++.+++....-
T Consensus 281 ~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~------------------------~~kvvl--iQi~~pSr~~v~~- 333 (486)
T COG0380 281 NKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEW------------------------RGKVVL--LQIAPPSREDVEE- 333 (486)
T ss_pred CceEEEEehhcccccCcHHHHHHHHHHHHhChhh------------------------hCceEE--EEecCCCccccHH-
Confidence 3679999999999999999999999999999873 222211 1122222222000
Q ss_pred chhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhc
Q 004942 522 SESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQH 601 (722)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~ 601 (722)
.-..+..++.+++.+ -..
T Consensus 334 ---------------------------------------------y~~~~~~i~~~V~rI-----------------N~~ 351 (486)
T COG0380 334 ---------------------------------------------YQALRLQIEELVGRI-----------------NGE 351 (486)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHH-----------------Hhh
Confidence 000122333333322 112
Q ss_pred CCCCCcEEeCC-----c---hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCC----CEEEcCCCChhhhhccCcc
Q 004942 602 SNLSKAMLWTP-----A---TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV----PVLGTDAGGTKEIVEHNVT 669 (722)
Q Consensus 602 ~~L~~~V~f~G-----~---~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~Gl----PVVaTd~GG~~EIVe~g~t 669 (722)
-+++-|++ . .+++..+|..||+++++|. .+||-+|..|+.||.- |.|.|...|....+.+
T Consensus 352 ---fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtpl--rDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~--- 423 (486)
T COG0380 352 ---FGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPL--RDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD--- 423 (486)
T ss_pred ---cCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccc--cccccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---
Confidence 23344443 2 3679999999999999995 9999999999999844 6677776666666654
Q ss_pred EEEECCCCccHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 670 GLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 670 GlLvp~~d~~~e~LA~aI~~LL~-np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
.++++|-|. +.+|++|.+.|+ .++++++.-...++.+.+++...+++.+.
T Consensus 424 AliVNP~d~--~~va~ai~~AL~m~~eEr~~r~~~~~~~v~~~d~~~W~~~fl 474 (486)
T COG0380 424 ALIVNPWDT--KEVADAIKRALTMSLEERKERHEKLLKQVLTHDVARWANSFL 474 (486)
T ss_pred CEeECCCCh--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 689999998 999999999998 66778887788888888887777777653
No 109
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.54 E-value=3.7e-05 Score=83.44 Aligned_cols=95 Identities=26% Similarity=0.166 Sum_probs=69.4
Q ss_pred CCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC----hhhhhccCccEEEECCCCc
Q 004942 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHP 678 (722)
Q Consensus 603 ~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG----~~EIVe~g~tGlLvp~~d~ 678 (722)
.++++|.+.++. +...+|..||++|... -..++.||+++|+|+|.....+ ..+.++....|...+..+.
T Consensus 285 ~~~~~v~~~~~~-p~~~ll~~~d~~I~hg------G~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~ 357 (401)
T cd03784 285 DLPDNVRVVDFV-PHDWLLPRCAAVVHHG------GAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPREL 357 (401)
T ss_pred CCCCceEEeCCC-CHHHHhhhhheeeecC------CchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccC
Confidence 456789988887 5788999999999333 3478999999999999986654 3444555557777766655
Q ss_pred cHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 004942 679 GAQVLAQNLRYLLKNPSVRERMAMEGR 705 (722)
Q Consensus 679 ~~e~LA~aI~~LL~np~~r~~mg~~gr 705 (722)
+.+.+++++.++++++ .++++...+.
T Consensus 358 ~~~~l~~al~~~l~~~-~~~~~~~~~~ 383 (401)
T cd03784 358 TAERLAAALRRLLDPP-SRRRAAALLR 383 (401)
T ss_pred CHHHHHHHHHHHhCHH-HHHHHHHHHH
Confidence 5699999999999854 4444444333
No 110
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.37 E-value=3.5e-05 Score=85.48 Aligned_cols=103 Identities=21% Similarity=0.257 Sum_probs=72.8
Q ss_pred cEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCCh---hhhhccC----ccEEEECCCCcc
Q 004942 607 AMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT---KEIVEHN----VTGLLHPPGHPG 679 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~---~EIVe~g----~tGlLvp~~d~~ 679 (722)
++.+.....++..+|++||++|..| |.++.|++++|+|+|.....+. ..+.+.. ..+......++
T Consensus 280 ~~~v~~~~~~~~~~l~~ADlvI~rS-------Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~- 351 (396)
T TIGR03492 280 TLEVLLGRGAFAEILHWADLGIAMA-------GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNP- 351 (396)
T ss_pred ceEEEechHhHHHHHHhCCEEEECc-------CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCH-
Confidence 3556666778999999999999887 3677999999999999874333 2222321 13444455555
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHH-hhcHHHHHH
Q 004942 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKSN-GLAERHSLG 718 (722)
Q Consensus 680 ~e~LA~aI~~LL~np~~r~~mg~~grk~ve-~~~~~~~~~ 718 (722)
+.+++++..+++|++.+++|.+.+++... ....+.+++
T Consensus 352 -~~l~~~l~~ll~d~~~~~~~~~~~~~~lg~~~a~~~ia~ 390 (396)
T TIGR03492 352 -EQAAQVVRQLLADPELLERCRRNGQERMGPPGASARIAE 390 (396)
T ss_pred -HHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 89999999999999999888865554442 244444443
No 111
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.37 E-value=6.9e-05 Score=78.67 Aligned_cols=80 Identities=25% Similarity=0.302 Sum_probs=61.5
Q ss_pred CCcEEeCCch-hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhh------hhccCccEEEECCCC
Q 004942 605 SKAMLWTPAT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKE------IVEHNVTGLLHPPGH 677 (722)
Q Consensus 605 ~~~V~f~G~~-~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~E------IVe~g~tGlLvp~~d 677 (722)
.++|.+.+.. .++.+++.+||++|... |+ .++.||+++|+|+|.-...+..| .+++...|...+..+
T Consensus 231 ~~ni~~~~~~~~~~~~~m~~ad~vIs~~-----G~-~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~ 304 (318)
T PF13528_consen 231 PGNIHVRPFSTPDFAELMAAADLVISKG-----GY-TTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQED 304 (318)
T ss_pred CCCEEEeecChHHHHHHHHhCCEEEECC-----CH-HHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEccccc
Confidence 4688899976 89999999999999665 23 35999999999999987655444 344455676766667
Q ss_pred ccHHHHHHHHHHh
Q 004942 678 PGAQVLAQNLRYL 690 (722)
Q Consensus 678 ~~~e~LA~aI~~L 690 (722)
.+++.|+++|+++
T Consensus 305 ~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 305 LTPERLAEFLERL 317 (318)
T ss_pred CCHHHHHHHHhcC
Confidence 6668888888764
No 112
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.28 E-value=0.00064 Score=74.66 Aligned_cols=82 Identities=21% Similarity=0.252 Sum_probs=63.2
Q ss_pred CcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHH
Q 004942 606 KAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVL 683 (722)
Q Consensus 606 ~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~L 683 (722)
.+|.+++.. .++..++..||++|-.|. |. +.||.++|+|||. .|.-+|.++.|.+.++++ .++ +++
T Consensus 262 ~~v~l~~~l~~~~~l~Ll~~a~~vitdSS------gg-i~EA~~lg~Pvv~--l~~R~e~~~~g~nvl~vg-~~~--~~I 329 (365)
T TIGR03568 262 PNFRLFKSLGQERYLSLLKNADAVIGNSS------SG-IIEAPSFGVPTIN--IGTRQKGRLRADSVIDVD-PDK--EEI 329 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCEEEEcCh------hH-HHhhhhcCCCEEe--ecCCchhhhhcCeEEEeC-CCH--HHH
Confidence 579999964 789999999999997773 22 3899999999994 567888888887887774 444 888
Q ss_pred HHHHHHhhcCHHHHHHH
Q 004942 684 AQNLRYLLKNPSVRERM 700 (722)
Q Consensus 684 A~aI~~LL~np~~r~~m 700 (722)
.+++..+ .+++.++.+
T Consensus 330 ~~a~~~~-~~~~~~~~~ 345 (365)
T TIGR03568 330 VKAIEKL-LDPAFKKSL 345 (365)
T ss_pred HHHHHHH-hChHHHHHH
Confidence 9999985 455544443
No 113
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.09 E-value=1.4e-05 Score=73.18 Aligned_cols=117 Identities=18% Similarity=0.134 Sum_probs=65.2
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc---------------chh--hhcCccEEEE
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP---------------SFK--TSMKADLVIA 317 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~---------------~~~--~~~k~DlVia 317 (722)
||++..+.+||++|.++||+|++++....+. ..+....|+++..++... ++. ...+||+||+
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~~ 79 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPE-DDEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVHA 79 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GG-G-SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCc-ccccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEEEe
Confidence 7999999999999999999999999665443 233456788887665433 232 4679999988
Q ss_pred CCchhhHhHHHHHHhccCCCccEEEEEecchh--------HhHHH-HHhhhccccEEEEecHHhHHH
Q 004942 318 GSAVCATWIDQYITRFPAGGSQVVWWIMENRR--------EYFDR-AKLVLDRVKLLVFLSESQTKQ 375 (722)
Q Consensus 318 ~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~--------~yf~~-~k~~l~rvk~li~lS~~~~~~ 375 (722)
++.. .++...+.....+.+ +++.+|.... .++.. ....+.+++.++++|+...+.
T Consensus 80 ~~~~--~~~~~~~~~~~~~~p-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~ 143 (160)
T PF13579_consen 80 HSPT--AGLVAALARRRRGIP-LVVTVHGTLFRRGSRWKRRLYRWLERRLLRRADRVIVVSEAMRRY 143 (160)
T ss_dssp EHHH--HHHHHHHHHHHHT---EEEE-SS-T------HHHHHHHHHHHHHHHH-SEEEESSHHHHHH
T ss_pred cccc--hhHHHHHHHHccCCc-EEEEECCCchhhccchhhHHHHHHHHHHHhcCCEEEECCHHHHHH
Confidence 8622 223333333233334 6666664211 11111 124455589999999997543
No 114
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=97.92 E-value=0.00031 Score=76.54 Aligned_cols=94 Identities=20% Similarity=0.291 Sum_probs=69.0
Q ss_pred CCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCCh----hhhhccCccEEEECCCCcc
Q 004942 604 LSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT----KEIVEHNVTGLLHPPGHPG 679 (722)
Q Consensus 604 L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~----~EIVe~g~tGlLvp~~d~~ 679 (722)
++++|.+.+.+.. ..++..||++|..+ |. .+++||+++|+|+|+....+- .+.+.+...|...+..+.+
T Consensus 273 ~~~~v~~~~~~p~-~~ll~~~~~~I~hg-----G~-~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~ 345 (392)
T TIGR01426 273 LPPNVEVRQWVPQ-LEILKKADAFITHG-----GM-NSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVT 345 (392)
T ss_pred CCCCeEEeCCCCH-HHHHhhCCEEEECC-----Cc-hHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCC
Confidence 3467888887644 48999999999665 22 478999999999999654322 2334455577777766666
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH
Q 004942 680 AQVLAQNLRYLLKNPSVRERMAMEG 704 (722)
Q Consensus 680 ~e~LA~aI~~LL~np~~r~~mg~~g 704 (722)
++.++++|++++.|++.++++.+-+
T Consensus 346 ~~~l~~ai~~~l~~~~~~~~~~~l~ 370 (392)
T TIGR01426 346 AEKLREAVLAVLSDPRYAERLRKMR 370 (392)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 6999999999999998766664443
No 115
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.80 E-value=0.0065 Score=66.66 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=51.3
Q ss_pred EEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCC---ChhhhhccCccEEEECCCCccHHHHH
Q 004942 608 MLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG---GTKEIVEHNVTGLLHPPGHPGAQVLA 684 (722)
Q Consensus 608 V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~G---G~~EIVe~g~tGlLvp~~d~~~e~LA 684 (722)
+......-+..+++.-||++|-.+ |....||..+|+|.|.+-.| +..+.+.+ .|+++...|+ +++.
T Consensus 233 ~~i~~~~vd~~~Ll~~a~l~Ig~g-------gTMa~EAA~LGtPaIs~~~g~~~~vd~~L~~--~Gll~~~~~~--~ei~ 301 (335)
T PF04007_consen 233 VIIPPEPVDGLDLLYYADLVIGGG-------GTMAREAALLGTPAISCFPGKLLAVDKYLIE--KGLLYHSTDP--DEIV 301 (335)
T ss_pred ccccCCCCCHHHHHHhcCEEEeCC-------cHHHHHHHHhCCCEEEecCCcchhHHHHHHH--CCCeEecCCH--HHHH
Confidence 333433336669999999999444 25689999999999997654 33343332 4788888888 7777
Q ss_pred HHHHHhhc
Q 004942 685 QNLRYLLK 692 (722)
Q Consensus 685 ~aI~~LL~ 692 (722)
+.+...+.
T Consensus 302 ~~v~~~~~ 309 (335)
T PF04007_consen 302 EYVRKNLG 309 (335)
T ss_pred HHHHHhhh
Confidence 76655543
No 116
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.76 E-value=0.0071 Score=67.29 Aligned_cols=84 Identities=25% Similarity=0.285 Sum_probs=58.0
Q ss_pred hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcC-CCCh----------------hhhhccCccEEEECC--
Q 004942 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD-AGGT----------------KEIVEHNVTGLLHPP-- 675 (722)
Q Consensus 615 ~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd-~GG~----------------~EIVe~g~tGlLvp~-- 675 (722)
.+-.+++++||+.+.+| |.+++|++.+|+|.|..- .+-+ +.|+.+. -++|.
T Consensus 252 ~~~~~~m~~ad~al~~S-------GTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~---~v~PEli 321 (373)
T PF02684_consen 252 GESYDAMAAADAALAAS-------GTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGR---EVVPELI 321 (373)
T ss_pred CchHHHHHhCcchhhcC-------CHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCC---Ccchhhh
Confidence 45678999999999888 689999999999998753 3322 2222221 12221
Q ss_pred -CCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 004942 676 -GHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKS 708 (722)
Q Consensus 676 -~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~v 708 (722)
++.+++.+++++..+++|++.+++.....++..
T Consensus 322 Q~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~ 355 (373)
T PF02684_consen 322 QEDATPENIAAELLELLENPEKRKKQKELFREIR 355 (373)
T ss_pred cccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 344559999999999999988666554444433
No 117
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.50 E-value=0.025 Score=62.97 Aligned_cols=90 Identities=21% Similarity=0.179 Sum_probs=67.1
Q ss_pred CCCCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcC-CCChhhhhccCccEEEECCCCcc
Q 004942 603 NLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD-AGGTKEIVEHNVTGLLHPPGHPG 679 (722)
Q Consensus 603 ~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd-~GG~~EIVe~g~tGlLvp~~d~~ 679 (722)
+-..+|.++.+. .+...++..|-+.+--|- ...=||-.+|+||++-. ...-+|.++.| +-.++. .+.
T Consensus 259 ~~~~~v~li~pl~~~~f~~L~~~a~~iltDSG-------giqEEAp~lg~Pvl~lR~~TERPE~v~ag-t~~lvg-~~~- 328 (383)
T COG0381 259 KNVERVKLIDPLGYLDFHNLMKNAFLILTDSG-------GIQEEAPSLGKPVLVLRDTTERPEGVEAG-TNILVG-TDE- 328 (383)
T ss_pred CCCCcEEEeCCcchHHHHHHHHhceEEEecCC-------chhhhHHhcCCcEEeeccCCCCccceecC-ceEEeC-ccH-
Confidence 444568888765 577888888877776663 45779999999999964 45778877754 333444 333
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHH
Q 004942 680 AQVLAQNLRYLLKNPSVRERMAME 703 (722)
Q Consensus 680 ~e~LA~aI~~LL~np~~r~~mg~~ 703 (722)
+.+.+++..++++++.+++|+..
T Consensus 329 -~~i~~~~~~ll~~~~~~~~m~~~ 351 (383)
T COG0381 329 -ENILDAATELLEDEEFYERMSNA 351 (383)
T ss_pred -HHHHHHHHHHhhChHHHHHHhcc
Confidence 88999999999999999988654
No 118
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.45 E-value=0.014 Score=68.35 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=60.2
Q ss_pred HHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc-CCCCh------------------hhhhccCc--cEEEECC
Q 004942 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT-DAGGT------------------KEIVEHNV--TGLLHPP 675 (722)
Q Consensus 617 v~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT-d~GG~------------------~EIVe~g~--tGlLvp~ 675 (722)
-.+++++||+.+.+| |.+++|++.+|+|.|.. ..+-+ +.|+.+.. .=++-..
T Consensus 482 ~~~~m~aaD~aLaaS-------GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ 554 (608)
T PRK01021 482 RYELMRECDCALAKC-------GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGK 554 (608)
T ss_pred hHHHHHhcCeeeecC-------CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCc
Confidence 369999999999888 68999999999999874 33322 22232211 0111002
Q ss_pred CCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhh
Q 004942 676 GHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGL 711 (722)
Q Consensus 676 ~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~ 711 (722)
+|.+++.+++++ .++.|++.+++|.+...+..+.+
T Consensus 555 ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 555 KDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM 589 (608)
T ss_pred ccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh
Confidence 355569999996 88999998988887777666554
No 119
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.41 E-value=0.014 Score=65.33 Aligned_cols=98 Identities=20% Similarity=0.174 Sum_probs=75.2
Q ss_pred CCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC----CChhhhhccCccEEEECCCCc
Q 004942 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVEHNVTGLLHPPGHP 678 (722)
Q Consensus 603 ~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~----GG~~EIVe~g~tGlLvp~~d~ 678 (722)
+++.++.-.+.. ...+++..||++|... |+| ++.||+.+|+|+|+-.. ....+.++.-..|...+....
T Consensus 281 ~~p~n~~v~~~~-p~~~~l~~ad~vI~hG-----G~g-tt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l 353 (406)
T COG1819 281 NVPDNVIVADYV-PQLELLPRADAVIHHG-----GAG-TTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEEL 353 (406)
T ss_pred cCCCceEEecCC-CHHHHhhhcCEEEecC-----Ccc-hHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccC
Confidence 677788888766 3446999999999766 344 69999999999998644 335567777778988886666
Q ss_pred cHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 004942 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKK 707 (722)
Q Consensus 679 ~~e~LA~aI~~LL~np~~r~~mg~~grk~ 707 (722)
..+.++++|+++|.|+..++.........
T Consensus 354 ~~~~l~~av~~vL~~~~~~~~~~~~~~~~ 382 (406)
T COG1819 354 TEERLRAAVNEVLADDSYRRAAERLAEEF 382 (406)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 66999999999999998776655444433
No 120
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.33 E-value=0.033 Score=61.94 Aligned_cols=83 Identities=25% Similarity=0.272 Sum_probs=58.5
Q ss_pred hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc-CC----------------CChhhhhccCccEEEECC---
Q 004942 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT-DA----------------GGTKEIVEHNVTGLLHPP--- 675 (722)
Q Consensus 616 dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT-d~----------------GG~~EIVe~g~tGlLvp~--- 675 (722)
+-.+.+.+||+.+..| |.+++|+|.+|+|.|++ .+ -+++.|+.+. .++|.
T Consensus 257 ~~~~a~~~aD~al~aS-------GT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~---~ivPEliq 326 (381)
T COG0763 257 EKRKAFAAADAALAAS-------GTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGR---EIVPELIQ 326 (381)
T ss_pred hHHHHHHHhhHHHHhc-------cHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCC---ccchHHHh
Confidence 4568899999999888 68999999999999876 22 2334444321 12322
Q ss_pred CCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 004942 676 GHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKS 708 (722)
Q Consensus 676 ~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~v 708 (722)
.+..++.+++++..++.|+..++++.+...+.-
T Consensus 327 ~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~ 359 (381)
T COG0763 327 EDCTPENLARALEELLLNGDRREALKEKFRELH 359 (381)
T ss_pred hhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHH
Confidence 233459999999999999977777666555443
No 121
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.31 E-value=0.0028 Score=58.52 Aligned_cols=95 Identities=16% Similarity=0.097 Sum_probs=63.6
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-------------chhhhc
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-------------SFKTSM 310 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-------------~~~~~~ 310 (722)
|||++.+.. ...++++|++|.+.|++|.++++.. +........|++++..+... ++.++.
T Consensus 1 KIl~i~~~~-----~~~~~~~~~~L~~~g~~V~ii~~~~--~~~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~ 73 (139)
T PF13477_consen 1 KILLIGNTP-----STFIYNLAKELKKRGYDVHIITPRN--DYEKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKE 73 (139)
T ss_pred CEEEEecCc-----HHHHHHHHHHHHHCCCEEEEEEcCC--CchhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhccC
Confidence 567776644 3478899999999999999999633 22444457889988876322 333478
Q ss_pred CccEEEECCchhhHhHHHHHHhccCCCccEEEEEec
Q 004942 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIME 346 (722)
Q Consensus 311 k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e 346 (722)
+||+||+++.... ++...++....+..++++.+|.
T Consensus 74 ~~DvIh~h~~~~~-~~~~~l~~~~~~~~~~i~~~hg 108 (139)
T PF13477_consen 74 KPDVIHCHTPSPY-GLFAMLAKKLLKNKKVIYTVHG 108 (139)
T ss_pred CCCEEEEecCChH-HHHHHHHHHHcCCCCEEEEecC
Confidence 9999999987543 3334343334443457777763
No 122
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.25 E-value=0.0048 Score=70.40 Aligned_cols=100 Identities=16% Similarity=0.248 Sum_probs=60.2
Q ss_pred CCC-CcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhh-----hhc-cCccEEEE
Q 004942 603 NLS-KAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKE-----IVE-HNVTGLLH 673 (722)
Q Consensus 603 ~L~-~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~E-----IVe-~g~tGlLv 673 (722)
|++ +++.|.+.. .+.-..|..+|+++=+. .=+-+.+++||+.+|+|||+-....... ++. -|...++.
T Consensus 338 Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~---p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA 414 (468)
T PF13844_consen 338 GVDPDRIIFSPVAPREEHLRRYQLADICLDTF---PYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIA 414 (468)
T ss_dssp TS-GGGEEEEE---HHHHHHHGGG-SEEE--S---SS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-
T ss_pred CCChhhEEEcCCCCHHHHHHHhhhCCEEeeCC---CCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcC
Confidence 554 789998854 44556788899999776 3455789999999999999864322221 111 12222222
Q ss_pred CCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 004942 674 PPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSN 709 (722)
Q Consensus 674 p~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve 709 (722)
. +. ++..+...+|.+|++.+++++.+-++...
T Consensus 415 ~--s~--~eYv~~Av~La~D~~~l~~lR~~Lr~~~~ 446 (468)
T PF13844_consen 415 D--SE--EEYVEIAVRLATDPERLRALRAKLRDRRS 446 (468)
T ss_dssp S--SH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred C--CH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 2 33 88888899999999999999999887764
No 123
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.08 E-value=0.08 Score=57.07 Aligned_cols=92 Identities=21% Similarity=0.263 Sum_probs=61.0
Q ss_pred CcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEE----cCCCChhhhhccCccEEEECCC-CccH
Q 004942 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLG----TDAGGTKEIVEHNVTGLLHPPG-HPGA 680 (722)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVa----Td~GG~~EIVe~g~tGlLvp~~-d~~~ 680 (722)
.++.+.-.+++|++++..||+.+.+. |.++.||...|+|.++ .+.-.+..-.+. -|.....+ +...
T Consensus 210 ~~i~~~~~~~dma~LMke~d~aI~Aa-------GstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~--lg~~~~l~~~l~~ 280 (318)
T COG3980 210 PNINLYIDTNDMAELMKEADLAISAA-------GSTLYEALLLGVPSLVLPLAENQIATAKEFEA--LGIIKQLGYHLKD 280 (318)
T ss_pred CCeeeEecchhHHHHHHhcchheecc-------chHHHHHHHhcCCceEEeeeccHHHHHHHHHh--cCchhhccCCCch
Confidence 56777777889999999999988654 5689999999999433 333333332221 12222211 0111
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH
Q 004942 681 QVLAQNLRYLLKNPSVRERMAMEGRK 706 (722)
Q Consensus 681 e~LA~aI~~LL~np~~r~~mg~~grk 706 (722)
......+.++..|+..|+.+...++-
T Consensus 281 ~~~~~~~~~i~~d~~~rk~l~~~~~~ 306 (318)
T COG3980 281 LAKDYEILQIQKDYARRKNLSFGSKL 306 (318)
T ss_pred HHHHHHHHHhhhCHHHhhhhhhccce
Confidence 67788889999999998887655443
No 124
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.06 E-value=0.00024 Score=68.56 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=62.9
Q ss_pred CcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC--------hhhhhccCccEEEECCCC
Q 004942 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG--------TKEIVEHNVTGLLHPPGH 677 (722)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG--------~~EIVe~g~tGlLvp~~d 677 (722)
.+|.+.++.+++.++|..||++|.-. -+.++.|++++|+|.|.-...+ ....+.....|......+
T Consensus 55 ~~v~~~~~~~~m~~~m~~aDlvIs~a------G~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~ 128 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAADLVISHA------GAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESE 128 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHSEEEECS-------CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC
T ss_pred CcEEEEechhhHHHHHHHcCEEEeCC------CccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCccc
Confidence 68999999999999999999888433 4578999999999998765544 222233333444444333
Q ss_pred ccHHHHHHHHHHhhcCHHHHHHHHHHH
Q 004942 678 PGAQVLAQNLRYLLKNPSVRERMAMEG 704 (722)
Q Consensus 678 ~~~e~LA~aI~~LL~np~~r~~mg~~g 704 (722)
.+++.|.++|..++.++..+++|..++
T Consensus 129 ~~~~~L~~~i~~l~~~~~~~~~~~~~~ 155 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDPEKLKEMAKAA 155 (167)
T ss_dssp -SCCCHHHHHHCHCCCHH-SHHHCCCH
T ss_pred CCHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 223789999999999999877776553
No 125
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.95 E-value=0.034 Score=60.99 Aligned_cols=83 Identities=23% Similarity=0.259 Sum_probs=59.6
Q ss_pred cEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHH-HHHHhCCCEEEc-CCCChhhhhccCccEEEECCCCccHHH
Q 004942 607 AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTI-EAMAFGVPVLGT-DAGGTKEIVEHNVTGLLHPPGHPGAQV 682 (722)
Q Consensus 607 ~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviL-EAMA~GlPVVaT-d~GG~~EIVe~g~tGlLvp~~d~~~e~ 682 (722)
+|.+.... .++..+++.|+++|-.|- -+. ||.++|+|||.- +.|.-.+.+..+.+- +++ .+. +.
T Consensus 240 ~v~~~~~l~~~~~l~ll~~a~~vvgdSs--------GI~eEa~~lg~P~v~iR~~geRqe~r~~~~nv-lv~-~~~--~~ 307 (346)
T PF02350_consen 240 NVRLIEPLGYEEYLSLLKNADLVVGDSS--------GIQEEAPSLGKPVVNIRDSGERQEGRERGSNV-LVG-TDP--EA 307 (346)
T ss_dssp TEEEE----HHHHHHHHHHESEEEESSH--------HHHHHGGGGT--EEECSSS-S-HHHHHTTSEE-EET-SSH--HH
T ss_pred CEEEECCCCHHHHHHHHhcceEEEEcCc--------cHHHHHHHhCCeEEEecCCCCCHHHHhhcceE-EeC-CCH--HH
Confidence 78888765 689999999999998882 355 999999999998 567778888876544 465 555 89
Q ss_pred HHHHHHHhhcCHHHHHHHH
Q 004942 683 LAQNLRYLLKNPSVRERMA 701 (722)
Q Consensus 683 LA~aI~~LL~np~~r~~mg 701 (722)
+.++|.+++.+++.+.++.
T Consensus 308 I~~ai~~~l~~~~~~~~~~ 326 (346)
T PF02350_consen 308 IIQAIEKALSDKDFYRKLK 326 (346)
T ss_dssp HHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHhChHHHHhhc
Confidence 9999999999866666653
No 126
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.76 E-value=0.26 Score=54.69 Aligned_cols=82 Identities=21% Similarity=0.280 Sum_probs=60.5
Q ss_pred CcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC--CChhhhhc------cCccEEEECCCC
Q 004942 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA--GGTKEIVE------HNVTGLLHPPGH 677 (722)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~--GG~~EIVe------~g~tGlLvp~~d 677 (722)
.+|....+..++.+|++.|+..|.-+ |+ ++++|-+++|+|.+.-.. ++-...+. =|...++.| .+
T Consensus 277 p~i~I~~f~~~~~~ll~gA~~vVSm~-----GY-NTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~p-e~ 349 (400)
T COG4671 277 PHISIFEFRNDFESLLAGARLVVSMG-----GY-NTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLP-EN 349 (400)
T ss_pred CCeEEEEhhhhHHHHHHhhheeeecc-----cc-hhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCc-cc
Confidence 57888889999999999999998433 23 689999999999988654 34322332 144555555 55
Q ss_pred ccHHHHHHHHHHhhcCH
Q 004942 678 PGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 678 ~~~e~LA~aI~~LL~np 694 (722)
..++.||++|..++.-|
T Consensus 350 lt~~~La~al~~~l~~P 366 (400)
T COG4671 350 LTPQNLADALKAALARP 366 (400)
T ss_pred CChHHHHHHHHhcccCC
Confidence 56799999999999843
No 127
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.057 Score=59.92 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=72.4
Q ss_pred hhHHHHHHHcCEEEE-cCCCCCCCc---cHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHh
Q 004942 615 TRVASLYSAADVYVI-NSQGLGETF---GRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYL 690 (722)
Q Consensus 615 ~dv~~lysaADv~V~-pS~~l~Egf---glviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~L 690 (722)
..++..+..-|+++. ++..+.++. .+-+.|+|+||.|.++...-++.-.+.+|..=++. .|. .++.+.+.++
T Consensus 249 ~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~--~d~--kdl~~~~~yl 324 (373)
T COG4641 249 DGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVY--QDS--KDLKEKLKYL 324 (373)
T ss_pred chhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEe--cCH--HHHHHHHHHH
Confidence 467778888888655 332223333 78999999999999999888888888877553333 344 8899999999
Q ss_pred hcCHHHHHHHHHHHHHHHHh
Q 004942 691 LKNPSVRERMAMEGRKKSNG 710 (722)
Q Consensus 691 L~np~~r~~mg~~grk~ve~ 710 (722)
+..++.|+++.+.|++++..
T Consensus 325 l~h~~erkeiae~~ye~V~~ 344 (373)
T COG4641 325 LNHPDERKEIAECAYERVLA 344 (373)
T ss_pred hcCcchHHHHHHhhHHHHHH
Confidence 99999999999999999965
No 128
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=96.49 E-value=0.31 Score=54.05 Aligned_cols=103 Identities=13% Similarity=0.155 Sum_probs=70.2
Q ss_pred CCchhHHHHHHHHHhcCCCCCcEEeCC-c--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC-CChh
Q 004942 586 NKVPYVKEILEFLSQHSNLSKAMLWTP-A--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGTK 661 (722)
Q Consensus 586 n~~~Y~~el~~~l~~~~~L~~~V~f~G-~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~-GG~~ 661 (722)
+...|.+++.+...+..+ .+++..+. . .++.-++++.||+.+++.. .-+|+|+ ++=.+.+|+||+.+.. .-..
T Consensus 226 ~n~~Yi~~V~~~~~~lF~-~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~-RQQgiGn-I~lLl~~G~~v~L~~~np~~~ 302 (360)
T PF07429_consen 226 NNQAYIQQVIQAGKELFG-AENFQILTEFMPFDEYLALLSRCDLGIFNHN-RQQGIGN-ICLLLQLGKKVFLSRDNPFWQ 302 (360)
T ss_pred chHHHHHHHHHHHHHhcC-ccceeEhhhhCCHHHHHHHHHhCCEEEEeec-hhhhHhH-HHHHHHcCCeEEEecCChHHH
Confidence 345566666655554433 24565543 2 3789999999999999886 4788886 6778999999988765 5556
Q ss_pred hhhccCccEEEECCCCccHHHHHHHHHHhhc
Q 004942 662 EIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (722)
Q Consensus 662 EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~ 692 (722)
++.+.+. -+++..++.+.+.++++=++|..
T Consensus 303 ~l~~~~i-pVlf~~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 303 DLKEQGI-PVLFYGDELDEALVREAQRQLAN 332 (360)
T ss_pred HHHhCCC-eEEeccccCCHHHHHHHHHHHhh
Confidence 6666643 34566566665777777666654
No 129
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=96.42 E-value=0.073 Score=61.44 Aligned_cols=99 Identities=16% Similarity=0.062 Sum_probs=70.1
Q ss_pred CCCCcEEeCCchhhHHHHH--HHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCC----ChhhhhccCccEEEECCC
Q 004942 603 NLSKAMLWTPATTRVASLY--SAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG----GTKEIVEHNVTGLLHPPG 676 (722)
Q Consensus 603 ~L~~~V~f~G~~~dv~~ly--saADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~G----G~~EIVe~g~tGlLvp~~ 676 (722)
+++++|.+.+... -.+++ ..+++||. -|-.+++.||+.+|+|+|+-... .....++....|...+..
T Consensus 343 ~~p~Nv~i~~w~P-q~~lL~hp~v~~fIt------HGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~ 415 (507)
T PHA03392 343 NLPANVLTQKWFP-QRAVLKHKNVKAFVT------QGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTV 415 (507)
T ss_pred cCCCceEEecCCC-HHHHhcCCCCCEEEe------cCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccC
Confidence 4567787777552 34677 45788883 33445799999999999997552 233344455578888877
Q ss_pred CccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 004942 677 HPGAQVLAQNLRYLLKNPSVRERMAMEGRKKS 708 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~np~~r~~mg~~grk~v 708 (722)
+.+.+.+.++|.++++||+-++...+-+....
T Consensus 416 ~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~ 447 (507)
T PHA03392 416 TVSAAQLVLAIVDVIENPKYRKNLKELRHLIR 447 (507)
T ss_pred CcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 77779999999999999887766654444433
No 130
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.37 E-value=0.48 Score=51.86 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=47.2
Q ss_pred hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCC---ChhhhhccCccEEEECCCCccHHHHHHHHHHhhc
Q 004942 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG---GTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (722)
Q Consensus 616 dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~G---G~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~ 692 (722)
|--+++--|++++-.+ |.-.-||...|+|.|++..| +..+... ..|+++...|+ .+..+...+++.
T Consensus 245 D~l~Llyya~lvig~g-------gTMarEaAlLGtpaIs~~pGkll~vdk~li--e~G~~~~s~~~--~~~~~~a~~~l~ 313 (346)
T COG1817 245 DTLSLLYYATLVIGAG-------GTMAREAALLGTPAISCYPGKLLAVDKYLI--EKGLLYHSTDE--IAIVEYAVRNLK 313 (346)
T ss_pred cHHHHHhhhheeecCC-------chHHHHHHHhCCceEEecCCccccccHHHH--hcCceeecCCH--HHHHHHHHHHhh
Confidence 4446777788887433 34468999999999999865 3444333 25888887787 555566666666
Q ss_pred CHH
Q 004942 693 NPS 695 (722)
Q Consensus 693 np~ 695 (722)
++.
T Consensus 314 ~~~ 316 (346)
T COG1817 314 YRR 316 (346)
T ss_pred chh
Confidence 664
No 131
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=95.81 E-value=0.18 Score=57.27 Aligned_cols=103 Identities=21% Similarity=0.250 Sum_probs=70.4
Q ss_pred hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCCh----hhhhcc-CccEEEEC-----CCCccHHHHH
Q 004942 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT----KEIVEH-NVTGLLHP-----PGHPGAQVLA 684 (722)
Q Consensus 615 ~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~----~EIVe~-g~tGlLvp-----~~d~~~e~LA 684 (722)
-|..++...|.+-|+||. +|++|-+-.|.--+|+|-|+|+..|. .|.|++ ...|+++- ..|.+.+.|+
T Consensus 492 lDYeeFVRGCHLGVFPSY--YEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~ 569 (692)
T KOG3742|consen 492 LDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLA 569 (692)
T ss_pred CCHHHHhccccccccccc--cCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHH
Confidence 368899999999999998 99999999999999999999998765 455554 34676542 1233447777
Q ss_pred HHHHHhhcCHHHHHHHHHHHHH-HHHh-hcHHHHHHHH
Q 004942 685 QNLRYLLKNPSVRERMAMEGRK-KSNG-LAERHSLGRY 720 (722)
Q Consensus 685 ~aI~~LL~np~~r~~mg~~grk-~ve~-~~~~~~~~~Y 720 (722)
+.|....+ ...|+++-++.+- +... ++|+++---|
T Consensus 570 ~~m~~F~~-qsRRQRIiqRNrtErLSdLLDWk~lG~~Y 606 (692)
T KOG3742|consen 570 SFMYEFCK-QSRRQRIIQRNRTERLSDLLDWKYLGRYY 606 (692)
T ss_pred HHHHHHHH-HHHHHHHHHhcchhhHHHHHhHHHHhHHH
Confidence 77766654 3345555444332 2222 5676655444
No 132
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=1.1 Score=52.59 Aligned_cols=266 Identities=16% Similarity=0.131 Sum_probs=150.2
Q ss_pred hccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCC-C-ChhHHHhCCcEEEEcCC--ccchh---hhcC
Q 004942 239 FVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-G-LMPELARRKIKVLEDRG--EPSFK---TSMK 311 (722)
Q Consensus 239 ~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g-~-l~~el~~~gI~Vl~~~~--~~~~~---~~~k 311 (722)
-.+..||=+|+|.|..--....+..+-+.+.+..++|.+..+..+. + +...+...=-+++.... +.... ..-.
T Consensus 256 ~~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~~~~dd~e~a~~I~~d~ 335 (620)
T COG3914 256 NGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPIGRMDDAEIANAIRTDG 335 (620)
T ss_pred cccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheeccCCcCHHHHHHHHHhcC
Confidence 3555799999999988888888999999999999999999866222 1 22222222223444442 22222 2456
Q ss_pred ccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHHHHHhhhccccEEE----EecHHhHHHHhhHHHhhhhhc
Q 004942 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLV----FLSESQTKQWLTWCEEEKLKL 387 (722)
Q Consensus 312 ~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~~k~~l~rvk~li----~lS~~~~~~~~~~~~~~~i~l 387 (722)
+||.+--+.+...-..+.++|.++. .||-| .- |+.... ....+.+| .+.+.. +..+.|.-+++
T Consensus 336 IdILvDl~g~T~d~r~~v~A~RpAP-iqvsw-lG-----y~aT~g--~p~~DY~I~D~y~vPp~a----e~yysEkl~RL 402 (620)
T COG3914 336 IDILVDLDGHTVDTRCQVFAHRPAP-IQVSW-LG-----YPATTG--SPNMDYFISDPYTVPPTA----EEYYSEKLWRL 402 (620)
T ss_pred CeEEEeccCceeccchhhhhcCCCc-eEEee-cc-----cccccC--CCcceEEeeCceecCchH----HHHHHHHHHhc
Confidence 7777665444333355777888763 33444 31 111100 00111111 122221 11121111222
Q ss_pred c--CCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHH
Q 004942 388 R--SQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESA 465 (722)
Q Consensus 388 ~--~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~ 465 (722)
+ ++| ++. +..+.| .. -|.++||+++.+++++.+ +..|-...++.-.
T Consensus 403 p~cy~p-------~d~--~~~v~p----------~~-----------sR~~lglp~~avVf~c~~--n~~K~~pev~~~w 450 (620)
T COG3914 403 PQCYQP-------VDG--FEPVTP----------PP-----------SRAQLGLPEDAVVFCCFN--NYFKITPEVFALW 450 (620)
T ss_pred ccccCC-------CCC--cccCCC----------Cc-----------chhhcCCCCCeEEEEecC--CcccCCHHHHHHH
Confidence 2 233 122 011221 11 167899998876655555 4567777888888
Q ss_pred HHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCccccc
Q 004942 466 QLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSI 545 (722)
Q Consensus 466 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (722)
.++.+..|+ +
T Consensus 451 mqIL~~vP~--------------------S-------------------------------------------------- 460 (620)
T COG3914 451 MQILSAVPN--------------------S-------------------------------------------------- 460 (620)
T ss_pred HHHHHhCCC--------------------c--------------------------------------------------
Confidence 888888777 1
Q ss_pred CCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCC-CcEEeCCch--hhHHHHHH
Q 004942 546 GNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS-KAMLWTPAT--TRVASLYS 622 (722)
Q Consensus 546 ~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~-~~V~f~G~~--~dv~~lys 622 (722)
.|++.+.|+.. .+. ..++.+++..|+. .++.|.+.. ++..+.|.
T Consensus 461 ---------------vl~L~~~~~~~-~~~-----------------~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~ 507 (620)
T COG3914 461 ---------------VLLLKAGGDDA-EIN-----------------ARLRDLAEREGVDSERLRFLPPAPNEDHRARYG 507 (620)
T ss_pred ---------------EEEEecCCCcH-HHH-----------------HHHHHHHHHcCCChhheeecCCCCCHHHHHhhc
Confidence 13334443221 111 1122333333664 689999854 67889999
Q ss_pred HcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc
Q 004942 623 AADVYVINSQGLGETFGRVTIEAMAFGVPVLGT 655 (722)
Q Consensus 623 aADv~V~pS~~l~EgfglviLEAMA~GlPVVaT 655 (722)
-||+|+=+. .-+-..+.+||+-+|+|||+-
T Consensus 508 iADlvLDTy---PY~g~TTa~daLwm~vPVlT~ 537 (620)
T COG3914 508 IADLVLDTY---PYGGHTTASDALWMGVPVLTR 537 (620)
T ss_pred hhheeeecc---cCCCccchHHHHHhcCceeee
Confidence 999999766 344557899999999999973
No 133
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=95.40 E-value=1.4 Score=48.39 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=67.5
Q ss_pred CCCchhHHHHHHHHHhcCCCCCcEEeCCc---hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc-CCCCh
Q 004942 585 SNKVPYVKEILEFLSQHSNLSKAMLWTPA---TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT-DAGGT 660 (722)
Q Consensus 585 sn~~~Y~~el~~~l~~~~~L~~~V~f~G~---~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT-d~GG~ 660 (722)
+++..|.+++.+.-.+..+- +++..+.. -++..++++.||+.++.-. .-+|+|+ ++=.+.+|+||+.+ +..-.
T Consensus 186 ~gn~~Yi~~V~~~~~~lF~~-~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~-RQQgiGn-l~lLi~~G~~v~l~r~n~fw 262 (322)
T PRK02797 186 ANNQAYIEEVRQAGLALFGA-ENFQILTEKLPFDDYLALLRQCDLGYFIFA-RQQGIGT-LCLLIQLGKPVVLSRDNPFW 262 (322)
T ss_pred CCCHHHHHHHHHHHHHhcCc-ccEEehhhhCCHHHHHHHHHhCCEEEEeec-hhhHHhH-HHHHHHCCCcEEEecCCchH
Confidence 45577888887777665432 45555543 3789999999999888765 3688886 66789999999886 56778
Q ss_pred hhhhccCccEEEECCCCccHHHHHH
Q 004942 661 KEIVEHNVTGLLHPPGHPGAQVLAQ 685 (722)
Q Consensus 661 ~EIVe~g~tGlLvp~~d~~~e~LA~ 685 (722)
.++.+++.. +++..++.+...+.+
T Consensus 263 qdl~e~gv~-Vlf~~d~L~~~~v~e 286 (322)
T PRK02797 263 QDLTEQGLP-VLFTGDDLDEDIVRE 286 (322)
T ss_pred HHHHhCCCe-EEecCCcccHHHHHH
Confidence 888887654 335545543234433
No 134
>PRK14986 glycogen phosphorylase; Provisional
Probab=95.16 E-value=0.39 Score=58.37 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=63.2
Q ss_pred cCCCCC--cEEeCCc--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc--CccEEEEC
Q 004942 601 HSNLSK--AMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--NVTGLLHP 674 (722)
Q Consensus 601 ~~~L~~--~V~f~G~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~--g~tGlLvp 674 (722)
.+.+.+ +|.|+.. ++--..++.+||+-...|+.-.|+.|..=+=||.-|.+-++|-=|...|+.++ +.+|+.+.
T Consensus 615 Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG 694 (815)
T PRK14986 615 DPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFG 694 (815)
T ss_pred ChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeC
Confidence 445555 7888873 45566889999999998885579999999999999999999999999999986 78999986
Q ss_pred CC
Q 004942 675 PG 676 (722)
Q Consensus 675 ~~ 676 (722)
..
T Consensus 695 ~~ 696 (815)
T PRK14986 695 NT 696 (815)
T ss_pred CC
Confidence 43
No 135
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=95.08 E-value=0.66 Score=50.52 Aligned_cols=94 Identities=14% Similarity=0.251 Sum_probs=54.9
Q ss_pred CCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc--CCC-------ChhhhhccCccEEEE
Q 004942 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT--DAG-------GTKEIVEHNVTGLLH 673 (722)
Q Consensus 603 ~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT--d~G-------G~~EIVe~g~tGlLv 673 (722)
....+|.+.....++.+++..||++|.= ++-++.|++.+++|||-. |.. ...+ .++...|-++
T Consensus 249 ~~~~~i~~~~~~~~~~~ll~~aDiLITD-------ySSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~-~~~~~pg~~~ 320 (369)
T PF04464_consen 249 EDNSNIIFVSDNEDIYDLLAAADILITD-------YSSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFD-YEEDLPGPIV 320 (369)
T ss_dssp T-TTTEEE-TT-S-HHHHHHT-SEEEES-------S-THHHHHGGGT--EEEE-TTTTTTTTTSSBSS--TTTSSSS-EE
T ss_pred ccCCcEEECCCCCCHHHHHHhcCEEEEe-------chhHHHHHHHhCCCEEEEeccHHHHhhccCCCCc-hHhhCCCcee
Confidence 3456788887777999999999999942 234899999999999954 332 2222 1222334333
Q ss_pred CCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 004942 674 PPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKS 708 (722)
Q Consensus 674 p~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~v 708 (722)
. +. ++|.++|..+++++...++-.+..++..
T Consensus 321 ~--~~--~eL~~~i~~~~~~~~~~~~~~~~~~~~~ 351 (369)
T PF04464_consen 321 Y--NF--EELIEAIENIIENPDEYKEKREKFRDKF 351 (369)
T ss_dssp S--SH--HHHHHHHTTHHHHHHHTHHHHHHHHHHH
T ss_pred C--CH--HHHHHHHHhhhhCCHHHHHHHHHHHHHh
Confidence 2 33 8899999998887765444333334444
No 136
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=95.04 E-value=0.55 Score=47.79 Aligned_cols=61 Identities=20% Similarity=0.130 Sum_probs=46.7
Q ss_pred cEEEEEeCCC---CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc
Q 004942 243 RKFILIFHEL---SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP 304 (722)
Q Consensus 243 kkillI~hel---s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~ 304 (722)
++|.+|-.-. ..||-|..+-+|+..|.+.|++|+|.|.....+. .+..-.|+++...+...
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~-~~~~y~gv~l~~i~~~~ 65 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPY-KEFEYNGVRLVYIPAPK 65 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCC-CCcccCCeEEEEeCCCC
Confidence 5677776653 7899999999999999999999999996554332 34445788887776554
No 137
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=94.85 E-value=2.2 Score=46.11 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=41.5
Q ss_pred HHHhcCCCCCcEEeCCch---hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCCh
Q 004942 597 FLSQHSNLSKAMLWTPAT---TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT 660 (722)
Q Consensus 597 ~l~~~~~L~~~V~f~G~~---~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~ 660 (722)
.|..+++-..-+.|-+.- .-...++++||.+|.+-. .. .-..||.|.|+||.+-...+.
T Consensus 215 ~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaD----Si-nM~sEAasTgkPv~~~~~~~~ 276 (329)
T COG3660 215 ILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTAD----SI-NMCSEAASTGKPVFILEPPNF 276 (329)
T ss_pred HHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecc----hh-hhhHHHhccCCCeEEEecCCc
Confidence 344445556677777752 347799999999998764 22 236899999999988655444
No 138
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=94.70 E-value=1.8 Score=52.20 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=54.9
Q ss_pred hcCCCCC--cEEeCCc--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc--CccEEEE
Q 004942 600 QHSNLSK--AMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--NVTGLLH 673 (722)
Q Consensus 600 ~~~~L~~--~V~f~G~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~--g~tGlLv 673 (722)
+++.+.+ +|.|+.. ++-...++++|||-..+|+--.|+.|..-.=||.-|.+-++|--|...||.++ ..+.+++
T Consensus 515 ~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiF 594 (713)
T PF00343_consen 515 NDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIF 594 (713)
T ss_dssp T-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEE
T ss_pred cChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEc
Confidence 4455555 6888874 35566788999999999885579999999999999999999999999999864 3577887
Q ss_pred C
Q 004942 674 P 674 (722)
Q Consensus 674 p 674 (722)
-
T Consensus 595 G 595 (713)
T PF00343_consen 595 G 595 (713)
T ss_dssp S
T ss_pred C
Confidence 4
No 139
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.66 E-value=0.61 Score=56.72 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=63.6
Q ss_pred hcCCCCC--cEEeCCc--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc--CccEEEE
Q 004942 600 QHSNLSK--AMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--NVTGLLH 673 (722)
Q Consensus 600 ~~~~L~~--~V~f~G~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~--g~tGlLv 673 (722)
+.+.+.+ +|.|+.. ++-...++.+||+-...|..-.|+.|..=+=+|.-|.+.|+|-=|...|+.++ +.+++++
T Consensus 601 ~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiF 680 (797)
T cd04300 601 NDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIF 680 (797)
T ss_pred cChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEe
Confidence 3445555 7888873 45667889999999998875579999999999999999999999999999987 7899998
Q ss_pred CCC
Q 004942 674 PPG 676 (722)
Q Consensus 674 p~~ 676 (722)
-..
T Consensus 681 G~~ 683 (797)
T cd04300 681 GLT 683 (797)
T ss_pred CCC
Confidence 643
No 140
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=94.45 E-value=0.12 Score=55.43 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=59.6
Q ss_pred CCCcEEeCCch-hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhh------hhccCccEEEECCC
Q 004942 604 LSKAMLWTPAT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKE------IVEHNVTGLLHPPG 676 (722)
Q Consensus 604 L~~~V~f~G~~-~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~E------IVe~g~tGlLvp~~ 676 (722)
+++++.+.+.. +++.++|..||++|..+- + .++.||+++|+|+|.....+..| .+++...|...+..
T Consensus 227 ~~~~v~~~~~~~~~~~~~l~~ad~vI~~~G-----~-~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~ 300 (321)
T TIGR00661 227 YNENVEIRRITTDNFKELIKNAELVITHGG-----F-SLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYK 300 (321)
T ss_pred cCCCEEEEECChHHHHHHHHhCCEEEECCC-----h-HHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChh
Confidence 34678888877 589999999999997762 2 36899999999999988765433 35555577777766
Q ss_pred CccHHHHHHHHHHhhcCH
Q 004942 677 HPGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~np 694 (722)
+. ++.+++...++|+
T Consensus 301 ~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 301 EL---RLLEAILDIRNMK 315 (321)
T ss_pred hH---HHHHHHHhccccc
Confidence 64 4555666555554
No 141
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=94.28 E-value=0.4 Score=54.18 Aligned_cols=90 Identities=26% Similarity=0.299 Sum_probs=55.6
Q ss_pred CcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC-CCh---hhhhccCccEEEECCCCccHH
Q 004942 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGT---KEIVEHNVTGLLHPPGHPGAQ 681 (722)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~-GG~---~EIVe~g~tGlLvp~~d~~~e 681 (722)
+++........ .++++...+-++=+. |--+.+.||+.+|+|+|+-.. |.. ...+++...|...+..+.+.+
T Consensus 323 ~n~~~~~W~PQ-~~lL~hp~v~~fitH----gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~ 397 (500)
T PF00201_consen 323 KNVLIVKWLPQ-NDLLAHPRVKLFITH----GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEE 397 (500)
T ss_dssp TTEEEESS--H-HHHHTSTTEEEEEES------HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHH
T ss_pred ceEEEeccccc-hhhhhcccceeeeec----cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHH
Confidence 34444443321 266765555333332 344689999999999999754 433 334445557888888888889
Q ss_pred HHHHHHHHhhcCHHHHHHH
Q 004942 682 VLAQNLRYLLKNPSVRERM 700 (722)
Q Consensus 682 ~LA~aI~~LL~np~~r~~m 700 (722)
.+.++|.++++|+.-++..
T Consensus 398 ~l~~ai~~vl~~~~y~~~a 416 (500)
T PF00201_consen 398 ELRAAIREVLENPSYKENA 416 (500)
T ss_dssp HHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHH
Confidence 9999999999998655443
No 142
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=94.27 E-value=0.41 Score=58.03 Aligned_cols=77 Identities=19% Similarity=0.197 Sum_probs=63.5
Q ss_pred hcCCCCC--cEEeCCc--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc--CccEEEE
Q 004942 600 QHSNLSK--AMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--NVTGLLH 673 (722)
Q Consensus 600 ~~~~L~~--~V~f~G~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~--g~tGlLv 673 (722)
+.+.+.+ +|.|+.. ++-...++.+||+-...|+.-.|+.|..=+=+|.-|.+-|+|-=|...|+.++ +.+++++
T Consensus 598 ~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiF 677 (794)
T TIGR02093 598 NDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIF 677 (794)
T ss_pred cChhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEc
Confidence 4445555 7888873 45667889999999998875579999999999999999999999999999987 7889988
Q ss_pred CCC
Q 004942 674 PPG 676 (722)
Q Consensus 674 p~~ 676 (722)
-..
T Consensus 678 G~~ 680 (794)
T TIGR02093 678 GLT 680 (794)
T ss_pred CCC
Confidence 643
No 143
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=93.91 E-value=0.47 Score=57.54 Aligned_cols=77 Identities=19% Similarity=0.199 Sum_probs=63.4
Q ss_pred hcCCCCC--cEEeCCc--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc--CccEEEE
Q 004942 600 QHSNLSK--AMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--NVTGLLH 673 (722)
Q Consensus 600 ~~~~L~~--~V~f~G~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~--g~tGlLv 673 (722)
+.+.+.+ +|.|+.. ++-...++.+||+-...|..-.|+.|..=+=+|.-|.+-|+|-=|...|+.++ +.+|+++
T Consensus 600 ~Dp~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~f 679 (798)
T PRK14985 600 NDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIF 679 (798)
T ss_pred CChhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEe
Confidence 4445555 7888874 45667889999999998875579999999999999999999999999999986 6799998
Q ss_pred CCC
Q 004942 674 PPG 676 (722)
Q Consensus 674 p~~ 676 (722)
-..
T Consensus 680 G~~ 682 (798)
T PRK14985 680 GHT 682 (798)
T ss_pred CCC
Confidence 643
No 144
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=93.63 E-value=11 Score=41.20 Aligned_cols=49 Identities=24% Similarity=0.359 Sum_probs=37.2
Q ss_pred CcE-EeCCch-hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC
Q 004942 606 KAM-LWTPAT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG 659 (722)
Q Consensus 606 ~~V-~f~G~~-~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG 659 (722)
..+ .|-+.- .-+..+|..||.++++.. ...| +.||.+.|+||..-...+
T Consensus 209 ~~~~~~~~~~~nPy~~~La~ad~i~VT~D----SvSM-vsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 209 PGVYIWDGTGENPYLGFLAAADAIVVTED----SVSM-VSEAAATGKPVYVLPLPG 259 (311)
T ss_pred CceEEecCCCCCcHHHHHHhCCEEEEcCc----cHHH-HHHHHHcCCCEEEecCCC
Confidence 455 564433 348899999999999874 3444 899999999999987765
No 145
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=93.13 E-value=3 Score=50.58 Aligned_cols=75 Identities=25% Similarity=0.254 Sum_probs=62.9
Q ss_pred CCCCcEEeCCc--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhc--cCccEEEECCCC
Q 004942 603 NLSKAMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVE--HNVTGLLHPPGH 677 (722)
Q Consensus 603 ~L~~~V~f~G~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe--~g~tGlLvp~~d 677 (722)
+...+|.|++. ++-..-++++|||-...|..-.|+.|..=+=||.-|.+-|+|-=|...|+.+ .+.+|+++....
T Consensus 554 n~~lkVvFl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~~ 632 (750)
T COG0058 554 NNKLKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETV 632 (750)
T ss_pred cccceEEEeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCch
Confidence 44557888874 3556678899999999887547999999999999999999999999999997 788999997654
No 146
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=90.00 E-value=4.1 Score=49.55 Aligned_cols=199 Identities=15% Similarity=0.181 Sum_probs=125.7
Q ss_pred cccceEEeecCCCCCCCCCchh----HHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCC
Q 004942 400 DELAFVAGFTCSLNTPTSSPEK----MREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSM 475 (722)
Q Consensus 400 ~~~~~v~vIpngid~~~f~~~~----~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~ 475 (722)
.....|..+|-|+|...|.... ...+ +..++..+ .+..+++-+-++...||+..=+.++.++.++.|..
T Consensus 236 gr~~~v~~~pigid~~r~v~~~~~~~~~~~----~~ei~~~~---~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~ 308 (732)
T KOG1050|consen 236 GRDVSVKALPIGIDVQRFVKLLELPYVGSK----GMEIKEPF---KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEW 308 (732)
T ss_pred cceeeeeecccccchHHhhccccchhHHHH----HHHHhhhc---cCCceEecccccccccCchHHHHHHHHHHHhChhh
Confidence 3344578899999988775422 2112 12333322 35678999999999999999999999999988873
Q ss_pred cchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCC
Q 004942 476 DDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGS 555 (722)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 555 (722)
.+ +++.+. .-.|
T Consensus 309 ~~----kVvliq----------------------------------------i~~~------------------------ 320 (732)
T KOG1050|consen 309 ID----KVVLIQ----------------------------------------IENP------------------------ 320 (732)
T ss_pred hc----eEEEEE----------------------------------------EecC------------------------
Confidence 10 011000 0000
Q ss_pred cccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCC--CCcEEeCC---chhhHHHHHHHcCEEEEc
Q 004942 556 GHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNL--SKAMLWTP---ATTRVASLYSAADVYVIN 630 (722)
Q Consensus 556 ~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L--~~~V~f~G---~~~dv~~lysaADv~V~p 630 (722)
--++|.+.++++.-+.. ....+.+..+- ...|.++- ...++-++|..+|+.+.+
T Consensus 321 --------~~~~~~~v~~~k~~v~~-------------~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~ 379 (732)
T KOG1050|consen 321 --------KRTDGKEVEELKFCVSV-------------HVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVT 379 (732)
T ss_pred --------CcccchHHHHHHHHhHh-------------hhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeec
Confidence 11334433444433321 11111111111 12343332 225788999999999999
Q ss_pred CCCCCCCccHHHHHHHHhC----CCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHH
Q 004942 631 SQGLGETFGRVTIEAMAFG----VPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERM 700 (722)
Q Consensus 631 S~~l~EgfglviLEAMA~G----lPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~m 700 (722)
+- .+|+.++.+|+.+|. .+.|.+..-|..+..+++ ..++.+-+. +.++..|...++.++.-.++
T Consensus 380 s~--rdGmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl~d~--aivvnpw~~--~~~~~~i~~al~~s~~e~~~ 447 (732)
T KOG1050|consen 380 SW--RDGMNLVFLEYILCQENKKSVLVLSEFIGDDTTLEDA--AIVVNPWDG--DEFAILISKALTMSDEEREL 447 (732)
T ss_pred cc--ccccchhhhHHHHhhcccCCceEEeeecccccccccc--CEEECCcch--HHHHHHHHHHhhcCHHHHhh
Confidence 94 999999999999884 678888888888888764 456677776 89999999999866554443
No 147
>PLN02448 UDP-glycosyltransferase family protein
Probab=87.97 E-value=2.5 Score=48.26 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=44.8
Q ss_pred cHHHHHHHHhCCCEEEcCC----CChhhhhccC-ccEEEECC-----CCccHHHHHHHHHHhhcCH-HHHHHHHHHHHHH
Q 004942 639 GRVTIEAMAFGVPVLGTDA----GGTKEIVEHN-VTGLLHPP-----GHPGAQVLAQNLRYLLKNP-SVRERMAMEGRKK 707 (722)
Q Consensus 639 glviLEAMA~GlPVVaTd~----GG~~EIVe~g-~tGlLvp~-----~d~~~e~LA~aI~~LL~np-~~r~~mg~~grk~ 707 (722)
-++++||+++|+|+|+-.. ......+.+. ..|+-+.. +..+.+++++++++++.++ +.-++|++++.+.
T Consensus 351 ~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~ 430 (459)
T PLN02448 351 WNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKEL 430 (459)
T ss_pred hhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 4589999999999999654 3334444431 35665531 2345599999999999875 3444554444443
No 148
>PLN02670 transferase, transferring glycosyl groups
Probab=87.92 E-value=1.1 Score=51.60 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=57.4
Q ss_pred HHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC----CChhhhhccCccEEEECCC----CccHHHHHHHHHHh
Q 004942 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVEHNVTGLLHPPG----HPGAQVLAQNLRYL 690 (722)
Q Consensus 619 ~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~----GG~~EIVe~g~tGlLvp~~----d~~~e~LA~aI~~L 690 (722)
++++...+-.+-+. +--+.++||+++|+|+|+-.. ......++.-..|+..+.. ..+.++++++|+.+
T Consensus 351 ~IL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~v 426 (472)
T PLN02670 351 KILSHESVGGFLTH----CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRLA 426 (472)
T ss_pred HHhcCcccceeeec----CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHHH
Confidence 45555555222232 233589999999999999644 3344455545678776532 24569999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHhhcHHHHH
Q 004942 691 LKNPSVRERMAMEGRKKSNGLAERHSL 717 (722)
Q Consensus 691 L~np~~r~~mg~~grk~ve~~~~~~~~ 717 (722)
+.+++ -+++.+++++..+.+...-..
T Consensus 427 m~~~~-g~~~r~~a~~l~~~~~~~~~~ 452 (472)
T PLN02670 427 MVDDA-GEEIRDKAKEMRNLFGDMDRN 452 (472)
T ss_pred hcCcc-hHHHHHHHHHHHHHHhCcchh
Confidence 98752 234555555555444333333
No 149
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=87.72 E-value=1.2 Score=50.80 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCEEEcCC----CChhhhhccC-ccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 004942 640 RVTIEAMAFGVPVLGTDA----GGTKEIVEHN-VTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKK 707 (722)
Q Consensus 640 lviLEAMA~GlPVVaTd~----GG~~EIVe~g-~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ 707 (722)
++++||+++|+|+|+-.. ......+.+. ..|+.+. ++.+.++++++|++++.+++ -+.+.+++++.
T Consensus 353 nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~~~~~v~~av~~lm~~~~-~~~~r~~a~~l 423 (451)
T PLN02410 353 NSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDLDRGAVERAVKRLMVEEE-GEEMRKRAISL 423 (451)
T ss_pred hHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-CcccHHHHHHHHHHHHcCCc-HHHHHHHHHHH
Confidence 589999999999999644 3344444433 4676665 45566999999999998864 34444444443
No 150
>PLN02562 UDP-glycosyltransferase
Probab=87.13 E-value=2.4 Score=48.34 Aligned_cols=90 Identities=13% Similarity=0.024 Sum_probs=55.3
Q ss_pred CcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC----CChhhhhcc-CccEEEECCCCccH
Q 004942 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVEH-NVTGLLHPPGHPGA 680 (722)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~----GG~~EIVe~-g~tGlLvp~~d~~~ 680 (722)
+++...+.. .-..+++..++-++=+. +--++++||+.+|+|+|+-.. ......+.+ -..|+-+. +.+.
T Consensus 328 ~~~~v~~w~-PQ~~iL~h~~v~~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~--~~~~ 400 (448)
T PLN02562 328 KQGKVVSWA-PQLEVLKHQAVGCYLTH----CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS--GFGQ 400 (448)
T ss_pred cCEEEEecC-CHHHHhCCCccceEEec----CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC--CCCH
Confidence 344444432 22356666655333332 223589999999999998643 344444443 24455553 3445
Q ss_pred HHHHHHHHHhhcCHHHHHHHHH
Q 004942 681 QVLAQNLRYLLKNPSVRERMAM 702 (722)
Q Consensus 681 e~LA~aI~~LL~np~~r~~mg~ 702 (722)
++++++|+.++.|++.+++..+
T Consensus 401 ~~l~~~v~~~l~~~~~r~~a~~ 422 (448)
T PLN02562 401 KEVEEGLRKVMEDSGMGERLMK 422 (448)
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999876655443
No 151
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=86.56 E-value=2.3 Score=39.30 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=35.7
Q ss_pred cHHHH-HHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCc
Q 004942 256 GAPLS-MMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE 303 (722)
Q Consensus 256 Gapls-m~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~ 303 (722)
++.+. ++.||++|.+.||+|.+.+ ...+.+.+...|+++...+..
T Consensus 9 ~Ghv~P~lala~~L~~rGh~V~~~~---~~~~~~~v~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 9 RGHVYPFLALARALRRRGHEVRLAT---PPDFRERVEAAGLEFVPIPGD 54 (139)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEE---TGGGHHHHHHTT-EEEESSSC
T ss_pred hhHHHHHHHHHHHHhccCCeEEEee---cccceecccccCceEEEecCC
Confidence 44444 8899999999999999887 456777889999999998776
No 152
>PLN03004 UDP-glycosyltransferase
Probab=86.18 E-value=3.2 Score=47.57 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=52.3
Q ss_pred HHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC----CChhhhhc-cCccEEEECCC---CccHHHHHHHHHHh
Q 004942 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVE-HNVTGLLHPPG---HPGAQVLAQNLRYL 690 (722)
Q Consensus 619 ~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~----GG~~EIVe-~g~tGlLvp~~---d~~~e~LA~aI~~L 690 (722)
++++.+++-.+-+. +--+.++||+++|+|+|+-.. ......+. .-..|+..+.+ ..+.++++++|+.+
T Consensus 346 ~iL~H~~v~~FvTH----~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~v 421 (451)
T PLN03004 346 PVLNHKAVGGFVTH----CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEI 421 (451)
T ss_pred HHhCCCccceEecc----CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHH
Confidence 57778887333332 233589999999999999643 44444553 33578776532 34569999999999
Q ss_pred hcCHHHHHH
Q 004942 691 LKNPSVRER 699 (722)
Q Consensus 691 L~np~~r~~ 699 (722)
+.|++.|++
T Consensus 422 m~~~~~r~~ 430 (451)
T PLN03004 422 IGECPVRER 430 (451)
T ss_pred hcCHHHHHH
Confidence 998665443
No 153
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=85.75 E-value=6.8 Score=42.06 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=31.9
Q ss_pred EeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc
Q 004942 609 LWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT 655 (722)
Q Consensus 609 ~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT 655 (722)
.+.|.. .++..+++.||++|.+-.+ .+.=|.|+|+|+|+-
T Consensus 235 ~l~g~~sL~el~ali~~a~l~I~~DSG-------p~HlAaA~~~P~i~l 276 (334)
T TIGR02195 235 NLAGETSLDEAVDLIALAKAVVTNDSG-------LMHVAAALNRPLVAL 276 (334)
T ss_pred cCCCCCCHHHHHHHHHhCCEEEeeCCH-------HHHHHHHcCCCEEEE
Confidence 356643 7899999999999977642 567788999999984
No 154
>PLN02208 glycosyltransferase family protein
Probab=84.79 E-value=2.3 Score=48.52 Aligned_cols=85 Identities=5% Similarity=-0.026 Sum_probs=55.0
Q ss_pred HHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC----CChhhhh-ccCccEEEECCCC---ccHHHHHHHHHHh
Q 004942 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIV-EHNVTGLLHPPGH---PGAQVLAQNLRYL 690 (722)
Q Consensus 619 ~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~----GG~~EIV-e~g~tGlLvp~~d---~~~e~LA~aI~~L 690 (722)
++++...+-++-+. +--+.++||+++|+|+|+-.. -.....+ +.-..|+.....+ .+.++++++|+.+
T Consensus 323 ~iL~H~~v~~FvtH----cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~ 398 (442)
T PLN02208 323 LILDHPSIGCFVNH----CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSV 398 (442)
T ss_pred HHhcCCccCeEEcc----CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHH
Confidence 45666655333332 223589999999999999654 3334433 3234677665433 5569999999999
Q ss_pred hcCH-HHHHHHHHHHHHH
Q 004942 691 LKNP-SVRERMAMEGRKK 707 (722)
Q Consensus 691 L~np-~~r~~mg~~grk~ 707 (722)
++++ +..+++.+++++.
T Consensus 399 m~~~~e~g~~~r~~~~~~ 416 (442)
T PLN02208 399 MDKDSDLGKLVRSNHTKL 416 (442)
T ss_pred hcCCchhHHHHHHHHHHH
Confidence 9876 4556666655544
No 155
>PLN02210 UDP-glucosyl transferase
Probab=84.35 E-value=4.2 Score=46.60 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=47.1
Q ss_pred HHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC----CChhhhhcc-CccEEEECC----CCccHHHHHHHHHH
Q 004942 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVEH-NVTGLLHPP----GHPGAQVLAQNLRY 689 (722)
Q Consensus 619 ~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~----GG~~EIVe~-g~tGlLvp~----~d~~~e~LA~aI~~ 689 (722)
.+++.+++-++=+. =|+ ++++||+++|+|+|+-.. .-....+.+ -..|+.... +..+.++++++++.
T Consensus 336 ~iL~h~~vg~FitH---~G~-nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~ 411 (456)
T PLN02210 336 KILSHMAISCFVTH---CGW-NSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEA 411 (456)
T ss_pred HHhcCcCcCeEEee---CCc-ccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHH
Confidence 46666653222221 123 479999999999999654 333344443 357776642 23556999999999
Q ss_pred hhcCHH
Q 004942 690 LLKNPS 695 (722)
Q Consensus 690 LL~np~ 695 (722)
++.+++
T Consensus 412 ~m~~~~ 417 (456)
T PLN02210 412 VTEGPA 417 (456)
T ss_pred HhcCch
Confidence 998764
No 156
>PLN02554 UDP-glycosyltransferase family protein
Probab=83.99 E-value=5 Score=46.24 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=42.1
Q ss_pred cHHHHHHHHhCCCEEEcCC----CChh-hhhccCccEEEECC-----------CCccHHHHHHHHHHhhc-CHHHHHH
Q 004942 639 GRVTIEAMAFGVPVLGTDA----GGTK-EIVEHNVTGLLHPP-----------GHPGAQVLAQNLRYLLK-NPSVRER 699 (722)
Q Consensus 639 glviLEAMA~GlPVVaTd~----GG~~-EIVe~g~tGlLvp~-----------~d~~~e~LA~aI~~LL~-np~~r~~ 699 (722)
-+.++||+.+|+|+|+-.. -... .+++.-..|+..+. +..+.++++++|+.++. |++.|++
T Consensus 370 ~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~ 447 (481)
T PLN02554 370 WNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKR 447 (481)
T ss_pred cchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHH
Confidence 3589999999999999654 3333 44554446766541 24456999999999996 6554444
No 157
>PLN00414 glycosyltransferase family protein
Probab=83.32 E-value=4.9 Score=46.03 Aligned_cols=85 Identities=7% Similarity=0.010 Sum_probs=55.7
Q ss_pred HHHHHc--CEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC----CChhhhh-ccCccEEEECCC---CccHHHHHHHHH
Q 004942 619 SLYSAA--DVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIV-EHNVTGLLHPPG---HPGAQVLAQNLR 688 (722)
Q Consensus 619 ~lysaA--Dv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~----GG~~EIV-e~g~tGlLvp~~---d~~~e~LA~aI~ 688 (722)
.+++.+ ++||. .+--+.++||+++|+|+|+-.. --....+ +.-..|+....+ ..+.++++++++
T Consensus 324 ~vL~h~~v~~fvt------H~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~ 397 (446)
T PLN00414 324 LILSHPSVGCFVN------HCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVK 397 (446)
T ss_pred HHhcCCccceEEe------cCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHH
Confidence 566555 55662 2333689999999999999654 3334444 344567666432 245699999999
Q ss_pred HhhcCH-HHHHHHHHHHHHHHH
Q 004942 689 YLLKNP-SVRERMAMEGRKKSN 709 (722)
Q Consensus 689 ~LL~np-~~r~~mg~~grk~ve 709 (722)
+++.++ +..+++.+++++.-+
T Consensus 398 ~~m~~~~e~g~~~r~~a~~~~~ 419 (446)
T PLN00414 398 SVMDKDSEIGNLVKRNHKKLKE 419 (446)
T ss_pred HHhcCChhhHHHHHHHHHHHHH
Confidence 999875 456666666655443
No 158
>PLN02764 glycosyltransferase family protein
Probab=81.97 E-value=4.2 Score=46.75 Aligned_cols=84 Identities=11% Similarity=0.040 Sum_probs=53.9
Q ss_pred HHHHHcCE--EEEcCCCCCCCccHHHHHHHHhCCCEEEcCCC----Chhhhhc-cCccEEEECC---CCccHHHHHHHHH
Q 004942 619 SLYSAADV--YVINSQGLGETFGRVTIEAMAFGVPVLGTDAG----GTKEIVE-HNVTGLLHPP---GHPGAQVLAQNLR 688 (722)
Q Consensus 619 ~lysaADv--~V~pS~~l~EgfglviLEAMA~GlPVVaTd~G----G~~EIVe-~g~tGlLvp~---~d~~~e~LA~aI~ 688 (722)
++++...+ || + -+--+.++||+++|+|+|+-... .....+. .-..|+.... ++.+.++++++++
T Consensus 329 ~vL~h~~v~~Fv--t----H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~ 402 (453)
T PLN02764 329 LILSHPSVGCFV--S----HCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAIN 402 (453)
T ss_pred HHhcCcccCeEE--e----cCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHH
Confidence 45665544 55 3 23346899999999999997542 3344443 3345665432 2356699999999
Q ss_pred HhhcCH-HHHHHHHHHHHHHH
Q 004942 689 YLLKNP-SVRERMAMEGRKKS 708 (722)
Q Consensus 689 ~LL~np-~~r~~mg~~grk~v 708 (722)
++++++ +..+++.+++++.-
T Consensus 403 ~vm~~~~~~g~~~r~~a~~~~ 423 (453)
T PLN02764 403 SVMKRDSEIGNLVKKNHTKWR 423 (453)
T ss_pred HHhcCCchhHHHHHHHHHHHH
Confidence 999876 45566666555543
No 159
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=81.87 E-value=3 Score=46.34 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=29.7
Q ss_pred hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcC
Q 004942 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD 656 (722)
Q Consensus 616 dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd 656 (722)
+..++|.+||+.+..| |.+++|++.+|+|.|..-
T Consensus 228 ~~~~~m~~aDlal~~S-------GT~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 228 DTHKALLEAEFAFICS-------GTATLEAALIGTPFVLAY 261 (347)
T ss_pred cHHHHHHhhhHHHhcC-------cHHHHHHHHhCCCEEEEE
Confidence 5678999999999888 678999999999998853
No 160
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=81.84 E-value=38 Score=36.29 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=33.9
Q ss_pred cEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcC
Q 004942 607 AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD 656 (722)
Q Consensus 607 ~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd 656 (722)
.+.+.|.. .++..+++.||++|.+-.+ .+.=|-|+|+|+|+--
T Consensus 235 ~~~l~g~~sL~elaali~~a~l~I~nDSG-------p~HlA~A~g~p~valf 279 (322)
T PRK10964 235 YVEVLPKLSLEQVARVLAGAKAVVSVDTG-------LSHLTAALDRPNITLY 279 (322)
T ss_pred cceecCCCCHHHHHHHHHhCCEEEecCCc-------HHHHHHHhCCCEEEEE
Confidence 35566643 7899999999999987653 5677899999999953
No 161
>PLN02173 UDP-glucosyl transferase family protein
Probab=81.35 E-value=5.8 Score=45.56 Aligned_cols=96 Identities=10% Similarity=0.120 Sum_probs=57.7
Q ss_pred CcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC----CChhhhhccC-ccEEEECCCC---
Q 004942 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVEHN-VTGLLHPPGH--- 677 (722)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~----GG~~EIVe~g-~tGlLvp~~d--- 677 (722)
+++.+.+... -.++++...+-++-+. +-.+.++||+++|+|+|+-.. .-....+.+. ..|+-+..++
T Consensus 317 ~~~~i~~W~P-Q~~iL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~ 391 (449)
T PLN02173 317 DKSLVLKWSP-QLQVLSNKAIGCFMTH----CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESG 391 (449)
T ss_pred CceEEeCCCC-HHHHhCCCccceEEec----CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCC
Confidence 4555555432 2256666664333332 334689999999999999644 3344455542 4666554321
Q ss_pred -ccHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 004942 678 -PGAQVLAQNLRYLLKNPSVRERMAMEGRKK 707 (722)
Q Consensus 678 -~~~e~LA~aI~~LL~np~~r~~mg~~grk~ 707 (722)
.+.+++++++++++.+++ .++|.+++++.
T Consensus 392 ~~~~e~v~~av~~vm~~~~-~~~~r~~a~~~ 421 (449)
T PLN02173 392 IAKREEIEFSIKEVMEGEK-SKEMKENAGKW 421 (449)
T ss_pred cccHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Confidence 245999999999998754 24444444443
No 162
>PLN03007 UDP-glucosyltransferase family protein
Probab=81.28 E-value=11 Score=43.59 Aligned_cols=84 Identities=11% Similarity=0.045 Sum_probs=48.8
Q ss_pred CcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC----CChhhhhc-cCccEEEE-------
Q 004942 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVE-HNVTGLLH------- 673 (722)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~----GG~~EIVe-~g~tGlLv------- 673 (722)
.++...+... -..+++.+++-++-+. +--+.++||+++|+|+|+-.. .-....+. .-..|+-+
T Consensus 345 ~g~~v~~w~P-Q~~iL~h~~v~~fvtH----~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~ 419 (482)
T PLN03007 345 KGLIIRGWAP-QVLILDHQATGGFVTH----CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVK 419 (482)
T ss_pred CCEEEecCCC-HHHHhccCccceeeec----CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccc
Confidence 3444444331 1356677665332232 223589999999999999654 22222221 11234432
Q ss_pred -CCCCccHHHHHHHHHHhhcCH
Q 004942 674 -PPGHPGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 674 -p~~d~~~e~LA~aI~~LL~np 694 (722)
+.+..+.++++++++.++.|+
T Consensus 420 ~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 420 VKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred cccCcccHHHHHHHHHHHhcCc
Confidence 223345699999999999886
No 163
>PLN02555 limonoid glucosyltransferase
Probab=80.88 E-value=6.9 Score=45.30 Aligned_cols=68 Identities=18% Similarity=0.044 Sum_probs=44.7
Q ss_pred cHHHHHHHHhCCCEEEcCC----CChhhhhccC-ccEEEEC-----CCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 004942 639 GRVTIEAMAFGVPVLGTDA----GGTKEIVEHN-VTGLLHP-----PGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKK 707 (722)
Q Consensus 639 glviLEAMA~GlPVVaTd~----GG~~EIVe~g-~tGlLvp-----~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ 707 (722)
-+.++||+.+|+|+|+-.. ......+.+. ..|+-.. .+..+.++++.+|++++.+++ -++|++++++.
T Consensus 365 ~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~-g~~~r~ra~~l 442 (480)
T PLN02555 365 WNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEK-AAELKQNALKW 442 (480)
T ss_pred cchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCch-HHHHHHHHHHH
Confidence 4589999999999999654 3333344433 5676662 233455899999999998753 34455554443
No 164
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=79.50 E-value=47 Score=35.38 Aligned_cols=76 Identities=22% Similarity=0.179 Sum_probs=47.2
Q ss_pred EeCCc--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc--CccEEEEC--CCCccHHH
Q 004942 609 LWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--NVTGLLHP--PGHPGAQV 682 (722)
Q Consensus 609 ~f~G~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~--g~tGlLvp--~~d~~~e~ 682 (722)
.+.|. ..++..+++.||++|.+-.+ .+.=|-|+|+|+|+--.+..+..... .....+.. ..+++++.
T Consensus 238 ~l~g~~sL~el~ali~~a~l~I~~DSg-------p~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~~~~~~~I~~~~ 310 (319)
T TIGR02193 238 VVLPKMSLAEVAALLAGADAVVGVDTG-------LTHLAAALDKPTVTLYGATDPGRTGGYGKPNVALLGESGANPTPDE 310 (319)
T ss_pred eecCCCCHHHHHHHHHcCCEEEeCCCh-------HHHHHHHcCCCEEEEECCCCHhhcccCCCCceEEccCccCCCCHHH
Confidence 34564 36899999999999977642 46678899999998532222222111 11112222 35666688
Q ss_pred HHHHHHHhh
Q 004942 683 LAQNLRYLL 691 (722)
Q Consensus 683 LA~aI~~LL 691 (722)
..+++..+|
T Consensus 311 V~~ai~~~~ 319 (319)
T TIGR02193 311 VLAALEELL 319 (319)
T ss_pred HHHHHHhhC
Confidence 888877664
No 165
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=79.11 E-value=14 Score=38.68 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=32.1
Q ss_pred EEeCCc--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC
Q 004942 608 MLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA 657 (722)
Q Consensus 608 V~f~G~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~ 657 (722)
+.+.|. ..++..+++.||++|.+-. ..+.-|.|+|+|+|+--.
T Consensus 181 ~~~~~~~~l~e~~~li~~~~l~I~~Ds-------g~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 181 VNLAGKTSLRELAALLARADLVVTNDS-------GPMHLAAALGTPTVALFG 225 (279)
T ss_pred ccCcCCCCHHHHHHHHHhCCEEEeeCC-------HHHHHHHHcCCCEEEEEC
Confidence 445664 3789999999999997653 245666799999998543
No 166
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=78.05 E-value=4.2 Score=42.63 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=32.8
Q ss_pred cEEeCCchhhHHHHHHHcCEEEE-cCCCCCCCccHHHHHHHHhCCCEEEcCC
Q 004942 607 AMLWTPATTRVASLYSAADVYVI-NSQGLGETFGRVTIEAMAFGVPVLGTDA 657 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysaADv~V~-pS~~l~EgfglviLEAMA~GlPVVaTd~ 657 (722)
++.+.....++.+++..||.++. +| .+-+||+.+|+||++-..
T Consensus 183 ~~~~~~~~~~~~~Ll~~s~~VvtinS--------tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 183 NVVIIDDDVNLYELLEQSDAVVTINS--------TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred CeEEECCCCCHHHHHHhCCEEEEECC--------HHHHHHHHcCCceEEecC
Confidence 44454444589999999988654 55 388999999999999643
No 167
>PLN00164 glucosyltransferase; Provisional
Probab=77.63 E-value=5.7 Score=45.81 Aligned_cols=86 Identities=12% Similarity=0.011 Sum_probs=53.1
Q ss_pred HHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC----CChhhhh-ccCccEEEECCC-----CccHHHHHHHHH
Q 004942 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIV-EHNVTGLLHPPG-----HPGAQVLAQNLR 688 (722)
Q Consensus 619 ~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~----GG~~EIV-e~g~tGlLvp~~-----d~~~e~LA~aI~ 688 (722)
.+++.+++-.+-+. +--++++||+++|+|+|+-.. .-....+ +.-..|+..... -.+.++++++|+
T Consensus 351 ~iL~h~~vg~fvtH----~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~ 426 (480)
T PLN00164 351 EILAHAAVGGFVTH----CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVR 426 (480)
T ss_pred HHhcCcccCeEEee----cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHH
Confidence 56666664333232 223589999999999999643 3444333 443567765421 134599999999
Q ss_pred HhhcCHH-HHHHHHHHHHHHH
Q 004942 689 YLLKNPS-VRERMAMEGRKKS 708 (722)
Q Consensus 689 ~LL~np~-~r~~mg~~grk~v 708 (722)
+++.+++ ..+.|.+++.+..
T Consensus 427 ~vm~~~~~~~~~~r~~a~~~~ 447 (480)
T PLN00164 427 SLMGGGEEEGRKAREKAAEMK 447 (480)
T ss_pred HHhcCCchhHHHHHHHHHHHH
Confidence 9998764 3555555555444
No 168
>PLN02167 UDP-glycosyltransferase family protein
Probab=74.14 E-value=10 Score=43.69 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCEEEcCC----CChhh-hhccCccEEEECC-------CCccHHHHHHHHHHhhcCH
Q 004942 640 RVTIEAMAFGVPVLGTDA----GGTKE-IVEHNVTGLLHPP-------GHPGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 640 lviLEAMA~GlPVVaTd~----GG~~E-IVe~g~tGlLvp~-------~d~~~e~LA~aI~~LL~np 694 (722)
++++||+++|+|+|+-.. .-... +++.-..|+.+.. +..+.++++++|++++.++
T Consensus 369 nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~ 435 (475)
T PLN02167 369 NSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE 435 (475)
T ss_pred ccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC
Confidence 479999999999999643 33332 3444456776642 1234589999999999765
No 169
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=73.82 E-value=6 Score=41.37 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=31.0
Q ss_pred EEEEEeCCC----CCCcHHHHHHHHHHHHHhCCCEEEEEEEcC
Q 004942 244 KFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSK 282 (722)
Q Consensus 244 killI~hel----s~gGaplsm~eLA~eL~s~G~~VsvV~ls~ 282 (722)
||++|+-|. ..||-.-.+..|+++|.++|++|.+|++..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 688888887 568999999999999999999999999665
No 170
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=72.62 E-value=55 Score=37.52 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=55.5
Q ss_pred hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC-CChhhhhcc-CccEEEECCCCccHHHHHHHHHHhhc
Q 004942 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGTKEIVEH-NVTGLLHPPGHPGAQVLAQNLRYLLK 692 (722)
Q Consensus 615 ~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~-GG~~EIVe~-g~tGlLvp~~d~~~e~LA~aI~~LL~ 692 (722)
.++..+++.||++|-.=-| .++=|+++|+|+|+-.. .=...++++ |...++++..+.++++|.+.+..+++
T Consensus 319 ~e~~~iIs~~dl~ig~RlH-------a~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 319 LEMGKILGACELTVGTRLH-------SAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLG 391 (426)
T ss_pred HHHHHHHhhCCEEEEecch-------HHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHh
Confidence 4677999999998865432 68889999999999654 222333332 23345667666666899999999999
Q ss_pred CHHHHHH
Q 004942 693 NPSVRER 699 (722)
Q Consensus 693 np~~r~~ 699 (722)
|.+..++
T Consensus 392 ~r~~~~~ 398 (426)
T PRK10017 392 QLPALNA 398 (426)
T ss_pred CHHHHHH
Confidence 9876443
No 171
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=72.21 E-value=15 Score=42.23 Aligned_cols=73 Identities=16% Similarity=0.204 Sum_probs=45.1
Q ss_pred HHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC----CChhhhhccC-ccEEEECC---CCccHHHHHHHHHHh
Q 004942 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVEHN-VTGLLHPP---GHPGAQVLAQNLRYL 690 (722)
Q Consensus 619 ~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~----GG~~EIVe~g-~tGlLvp~---~d~~~e~LA~aI~~L 690 (722)
++++..++-++-+. +-.+.++||+.+|+|+|+-.. ......+.+. ..|+-... +..+.++++++++.+
T Consensus 339 ~iL~h~~vg~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~v 414 (455)
T PLN02152 339 EVLRHRAVGCFVTH----CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAV 414 (455)
T ss_pred HHhCCcccceEEee----CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHH
Confidence 46666665333332 233589999999999999643 3333444331 23544431 223459999999999
Q ss_pred hcCHH
Q 004942 691 LKNPS 695 (722)
Q Consensus 691 L~np~ 695 (722)
++|+.
T Consensus 415 m~~~~ 419 (455)
T PLN02152 415 MEEKS 419 (455)
T ss_pred HhhhH
Confidence 98654
No 172
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=71.89 E-value=28 Score=40.36 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=50.3
Q ss_pred cEEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC----CChhhhh-ccCccEEEECCC---
Q 004942 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIV-EHNVTGLLHPPG--- 676 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~----GG~~EIV-e~g~tGlLvp~~--- 676 (722)
++...+... -..+++. +++|| + .+--++++||+++|+|+|+-.. .-....+ +.-..|+....+
T Consensus 344 g~~v~~w~P-Q~~vL~h~~v~~fv--t----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~ 416 (477)
T PLN02863 344 GLVIRGWAP-QVAILSHRAVGAFL--T----HCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADT 416 (477)
T ss_pred CEEecCCCC-HHHHhcCCCcCeEE--e----cCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCC
Confidence 344444332 2356665 45555 2 2333589999999999999643 3344443 333567766321
Q ss_pred CccHHHHHHHHHHhh-cCHHHHHH
Q 004942 677 HPGAQVLAQNLRYLL-KNPSVRER 699 (722)
Q Consensus 677 d~~~e~LA~aI~~LL-~np~~r~~ 699 (722)
..+.++++++++.++ ++++.|++
T Consensus 417 ~~~~~~v~~~v~~~m~~~~~~r~~ 440 (477)
T PLN02863 417 VPDSDELARVFMESVSENQVERER 440 (477)
T ss_pred CcCHHHHHHHHHHHhhccHHHHHH
Confidence 223488999999988 45554433
No 173
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=69.82 E-value=5 Score=42.00 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=47.1
Q ss_pred hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCC-CEEEcCC--CChhhhhccCccEEEECCCCccHHHHHHHH
Q 004942 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV-PVLGTDA--GGTKEIVEHNVTGLLHPPGHPGAQVLAQNL 687 (722)
Q Consensus 615 ~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~Gl-PVVaTd~--GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI 687 (722)
.+..+.|..+...++|.- ...+..-++|||++|| |||.++. -...|++.=....+.++..+. ..|-+.|
T Consensus 228 ~~~~~~l~~S~FCL~p~G--~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~--~~l~~iL 299 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRG--DGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADL--PELPEIL 299 (302)
T ss_pred hHHHHhcccCeEEEECCC--CCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHH--HHHHHHH
Confidence 467889999999998772 3347788999999999 9998763 344555543455666665554 4444443
No 174
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=69.54 E-value=26 Score=35.69 Aligned_cols=43 Identities=26% Similarity=0.230 Sum_probs=32.9
Q ss_pred cEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcC
Q 004942 607 AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD 656 (722)
Q Consensus 607 ~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd 656 (722)
.+.+.|.+ .++..+++.||++|.+-. ..+-=|.|+|+|+|+--
T Consensus 165 ~~~~~~~~~l~e~~ali~~a~~~I~~Dt-------g~~HlA~a~~~p~v~lf 209 (247)
T PF01075_consen 165 VINLAGKTSLRELAALISRADLVIGNDT-------GPMHLAAALGTPTVALF 209 (247)
T ss_dssp TEEETTTS-HHHHHHHHHTSSEEEEESS-------HHHHHHHHTT--EEEEE
T ss_pred eEeecCCCCHHHHHHHHhcCCEEEecCC-------hHHHHHHHHhCCEEEEe
Confidence 57777754 789999999999998764 25777999999999963
No 175
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=69.12 E-value=12 Score=43.47 Aligned_cols=72 Identities=10% Similarity=0.039 Sum_probs=47.2
Q ss_pred HHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC----CChhhhh-ccCccEEEECC--CCccHHHHHHHHHHhh
Q 004942 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIV-EHNVTGLLHPP--GHPGAQVLAQNLRYLL 691 (722)
Q Consensus 619 ~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~----GG~~EIV-e~g~tGlLvp~--~d~~~e~LA~aI~~LL 691 (722)
.+++...+-.+-+ -+--+.++||+.+|+|+|+-.. ......+ +.-..|+..+. +..+.++++++|..++
T Consensus 350 ~iL~h~~vg~Fit----H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm 425 (481)
T PLN02992 350 EILAHQAVGGFLT----HCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVM 425 (481)
T ss_pred HHhCCcccCeeEe----cCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHh
Confidence 4566665522223 2333589999999999999754 3334444 34446766654 2355699999999999
Q ss_pred cCH
Q 004942 692 KNP 694 (722)
Q Consensus 692 ~np 694 (722)
.++
T Consensus 426 ~~~ 428 (481)
T PLN02992 426 VEE 428 (481)
T ss_pred cCC
Confidence 875
No 176
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=68.96 E-value=9 Score=39.32 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=25.6
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCC
Q 004942 246 ILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG 284 (722)
Q Consensus 246 llI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g 284 (722)
+||+++-++....+. .|+++|.+.||+|.||++....
T Consensus 3 ILlTNDDGi~a~Gi~--aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 3 ILLTNDDGIDAPGIR--ALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp EEEE-SS-TTSHHHH--HHHHHHTTTSSEEEEEEESSST
T ss_pred EEEEcCCCCCCHHHH--HHHHHHHhcCCeEEEEeCCCCC
Confidence 345666666555544 4899998888999999987653
No 177
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=68.18 E-value=76 Score=34.48 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=32.5
Q ss_pred EEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc
Q 004942 608 MLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT 655 (722)
Q Consensus 608 V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT 655 (722)
+.+.|.. .++..+++.||++|.+-.| .+-=|.|+|+|+|+-
T Consensus 244 ~~l~g~~sL~el~ali~~a~l~I~nDTG-------p~HlAaA~g~P~val 286 (348)
T PRK10916 244 RNLAGETQLEQAVILIAACKAIVTNDSG-------LMHVAAALNRPLVAL 286 (348)
T ss_pred eeccCCCCHHHHHHHHHhCCEEEecCCh-------HHHHHHHhCCCEEEE
Confidence 4556643 7899999999999977642 567789999999973
No 178
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=65.03 E-value=89 Score=33.79 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=32.9
Q ss_pred EEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc
Q 004942 608 MLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT 655 (722)
Q Consensus 608 V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT 655 (722)
+.+.|.. .++..+++.||++|-+-. ..+.=|.|+|+|+|+=
T Consensus 243 ~~l~g~~sL~el~ali~~a~l~Vs~DS-------Gp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 243 TSLAGKLTLPQLAALIDHARLFIGVDS-------VPMHMAAALGTPLVAL 285 (344)
T ss_pred cccCCCCCHHHHHHHHHhCCEEEecCC-------HHHHHHHHcCCCEEEE
Confidence 4467754 789999999999997764 2567789999999985
No 179
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=64.90 E-value=46 Score=36.32 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=33.4
Q ss_pred cEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc
Q 004942 607 AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT 655 (722)
Q Consensus 607 ~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT 655 (722)
.+.+.|.+ .++..+++.||++|-+-.| .+.=|.|+|+|+|+-
T Consensus 244 ~~~l~g~~sL~el~ali~~a~l~v~nDSG-------p~HlAaA~g~P~v~l 287 (352)
T PRK10422 244 VTALAGKTTFPELGALIDHAQLFIGVDSA-------PAHIAAAVNTPLICL 287 (352)
T ss_pred cccccCCCCHHHHHHHHHhCCEEEecCCH-------HHHHHHHcCCCEEEE
Confidence 35567754 7899999999999977642 567788999999984
No 180
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=64.38 E-value=1.1 Score=51.85 Aligned_cols=42 Identities=10% Similarity=-0.088 Sum_probs=27.0
Q ss_pred cccccccccccCccccccccchhhhccCCcccccCCCCCccc
Q 004942 502 RGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (722)
Q Consensus 502 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (722)
+.+.|+||+++|+.|+-.|||.+..++|+|.+|..+++.||+
T Consensus 509 ~vFdPkfNiv~PGad~~iyFpyt~~~~Rl~~~~~~ie~Llfs 550 (550)
T PF00862_consen 509 DVFDPKFNIVSPGADESIYFPYTEKERRLTSLHPEIEELLFS 550 (550)
T ss_dssp -TT-TTEEE------TTTS--TT-TTTS-GGGHHHHHHHHH-
T ss_pred cccCCcccccCCCCCcceecCCccccccchhhhHHHHHHhcC
Confidence 468899999999999999999999999999999888888775
No 181
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=62.60 E-value=2.5e+02 Score=31.17 Aligned_cols=192 Identities=14% Similarity=0.143 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCh----hHHHhCCcEEEEcCCcc-chhhhcCccEEEECCchhhHhHHHHH
Q 004942 256 GAPLSMMELATELLSCGATVSAVVLSKRGGLM----PELARRKIKVLEDRGEP-SFKTSMKADLVIAGSAVCATWIDQYI 330 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~----~el~~~gI~Vl~~~~~~-~~~~~~k~DlVia~Sav~~~wi~~~i 330 (722)
|+.....|.-....++|+++.++..... .+. .+.....|+++...... ....-..+||++.+|......-.+++
T Consensus 2 GVTr~a~e~~~wf~KNg~~~~i~~a~e~-sftR~dsH~~~~~si~k~~~~e~de~v~~vN~yDI~m~nSvPa~~vqE~~i 80 (355)
T PF11440_consen 2 GVTRNALEMRDWFDKNGVEFTIVSADEK-SFTRPDSHDSKSFSIPKYLAKEYDETVKKVNDYDIVMFNSVPATKVQEAII 80 (355)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEETSS---TTTTSSS-TTTEEEE-TTTHHHHHHHHHTSSSEEEEEE--BTTS-HHHH
T ss_pred CccccHHHHHHHHHhcCCeeEEEEeccc-ccCCccccccceeeeehhhHHHHHHHHHHhhccCEEEEecccCchHHHHHH
Confidence 6777788888999999999999985432 111 11223345555332222 33335689999999876655544433
Q ss_pred ---HhccCCCc---cEEEEEecchhHhHHHHH---hhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcc
Q 004942 331 ---TRFPAGGS---QVVWWIMENRREYFDRAK---LVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDE 401 (722)
Q Consensus 331 ---~~~~~g~~---~ivw~I~e~r~~yf~~~k---~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~ 401 (722)
..+..+.. +++-..|+....-.++.. ..+++.+.+..-+... |-.-... +. .-|.-+++.. +
T Consensus 81 NnY~kii~~Ik~~ik~V~~~Hdh~~lsI~rn~~le~~m~~~DvIfshs~~g---~f~kv~m---~~-l~Ps~~~l~~-~- 151 (355)
T PF11440_consen 81 NNYEKIIKKIKPSIKVVGFMHDHNKLSIDRNPYLEGTMNEMDVIFSHSDNG---WFSKVLM---KE-LLPSKVSLFD-R- 151 (355)
T ss_dssp HHHHHHHHCS-TTSEEEEEE---SHHHHTTBSSHHHHHHH-SEEEES-TTS---HHHHTHH---HH-HS-SS--SSS---
T ss_pred HHHHHHHHhccccceeEEEeeccceeeccccccHHHHHHhhcEEEeccccc---hHHHHHH---Hh-hccccCchhh-h-
Confidence 33333332 223334443333333321 2344566666655443 1111100 00 0121112221 1
Q ss_pred cceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEE---EEEecCCCCCCHHHHHHHHHHhHH
Q 004942 402 LAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLV---LSLSSINPGKGQLLLVESAQLMIE 470 (722)
Q Consensus 402 ~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lI---l~vGri~~~Kg~~~LleA~~~L~~ 470 (722)
+.-.|...+ |.|... -.++|..+......+.. +|+||....||+..+++......+
T Consensus 152 ---i~~~p~v~n---fqpp~~-------i~~~Rstywkd~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK 210 (355)
T PF11440_consen 152 ---IKKFPMVFN---FQPPMD-------INKYRSTYWKDVSEKNMNVNRYIGRQTTWKGPRRMFDLHEKILK 210 (355)
T ss_dssp ---------EEE-------B--------HHHHHHHH---GGGSEEEEEEEE--SSGGG-HHHHHHHHHHTTT
T ss_pred ---hhhcceeee---cCCccc-------HHHHHHHHhhhhHhhhcccceeeeeeeeecCcHHHhhhHHHhcC
Confidence 122333222 222211 13566666654455555 899999999999999998887543
No 182
>PRK06988 putative formyltransferase; Provisional
Probab=60.86 E-value=19 Score=39.28 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=44.9
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCC--------CChhHHHhCCcEEEEcCCc--c---chhhh
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--------GLMPELARRKIKVLEDRGE--P---SFKTS 309 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g--------~l~~el~~~gI~Vl~~~~~--~---~~~~~ 309 (722)
.||+++ |.+-+.....++|.+.|++|.+|+...+. .+.....+.||+++..... . ...+.
T Consensus 3 mkIvf~-------Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~~ 75 (312)
T PRK06988 3 PRAVVF-------AYHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVAA 75 (312)
T ss_pred cEEEEE-------eCcHHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHHh
Confidence 577766 44556666777888899999888754322 2234456889999863221 1 34558
Q ss_pred cCccEEEEC
Q 004942 310 MKADLVIAG 318 (722)
Q Consensus 310 ~k~DlVia~ 318 (722)
.+||++++-
T Consensus 76 ~~~Dliv~~ 84 (312)
T PRK06988 76 AAPDFIFSF 84 (312)
T ss_pred cCCCEEEEe
Confidence 899999443
No 183
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=60.84 E-value=24 Score=36.18 Aligned_cols=69 Identities=23% Similarity=0.177 Sum_probs=41.1
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhC-CcEEEEcCCccchhhhcCccEEEECC
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR-KIKVLEDRGEPSFKTSMKADLVIAGS 319 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~-gI~Vl~~~~~~~~~~~~k~DlVia~S 319 (722)
..+++++| | +..+...-++.|+++|++|+||++.-...+ .++... ++.++.-..... .-..+|+|++.+
T Consensus 8 ~gk~vlVv------G-gG~va~rk~~~Ll~~ga~VtVvsp~~~~~l-~~l~~~~~i~~~~~~~~~~--dl~~~~lVi~at 77 (205)
T TIGR01470 8 EGRAVLVV------G-GGDVALRKARLLLKAGAQLRVIAEELESEL-TLLAEQGGITWLARCFDAD--ILEGAFLVIAAT 77 (205)
T ss_pred CCCeEEEE------C-cCHHHHHHHHHHHHCCCEEEEEcCCCCHHH-HHHHHcCCEEEEeCCCCHH--HhCCcEEEEECC
Confidence 45777766 3 344456778899999999999984333222 334433 455554333222 234678886654
No 184
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=58.85 E-value=31 Score=39.95 Aligned_cols=76 Identities=18% Similarity=0.345 Sum_probs=48.4
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCC-CChhH----HHh----CCc--EEEEcCCcc
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLMPE----LAR----RKI--KVLEDRGEP 304 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g-~l~~e----l~~----~gI--~Vl~~~~~~ 304 (722)
+..++..||+.++ |.|-..+.|++.|.++|.+|..+...... .+... +.. .+. .++....+.
T Consensus 308 ~~~~L~GKrvai~-------Gdp~~~i~LarfL~elGmevV~vgt~~~~~~~~~~d~~~l~~~~~~~~~~~~vive~~D~ 380 (457)
T CHL00073 308 YLDLVRGKSVFFM-------GDNLLEISLARFLIRCGMIVYEIGIPYMDKRYQAAELALLEDTCRKMNVPMPRIVEKPDN 380 (457)
T ss_pred HHHHHCCCEEEEE-------CCCcHHHHHHHHHHHCCCEEEEEEeCCCChhhhHHHHHHHHHHhhhcCCCCcEEEeCCCH
Confidence 4446788999733 46667788999999999999998644322 22222 321 222 233333333
Q ss_pred ----chhhhcCccEEEEC
Q 004942 305 ----SFKTSMKADLVIAG 318 (722)
Q Consensus 305 ----~~~~~~k~DlVia~ 318 (722)
.+.++.+|||+|+|
T Consensus 381 ~el~~~i~~~~pDLlIgG 398 (457)
T CHL00073 381 YNQIQRIRELQPDLAITG 398 (457)
T ss_pred HHHHHHHhhCCCCEEEcc
Confidence 55567899999988
No 185
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=56.42 E-value=68 Score=35.01 Aligned_cols=40 Identities=28% Similarity=0.339 Sum_probs=32.3
Q ss_pred eCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcC
Q 004942 610 WTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD 656 (722)
Q Consensus 610 f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd 656 (722)
+.|.+ .++..++..||++|.+..| .+.=|.|+|+|+|+--
T Consensus 236 l~~k~sL~e~~~li~~a~l~I~~DSg-------~~HlAaA~~~P~I~iy 277 (334)
T COG0859 236 LAGKTSLEELAALIAGADLVIGNDSG-------PMHLAAALGTPTIALY 277 (334)
T ss_pred cCCCCCHHHHHHHHhcCCEEEccCCh-------HHHHHHHcCCCEEEEE
Confidence 66644 7899999999999977652 4677899999999953
No 186
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.76 E-value=38 Score=30.41 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=35.4
Q ss_pred hHHHHHHHcCEEEEcCCCCC-CCccHHHHHHHHhCCCEEEcCCCChhhhh
Q 004942 616 RVASLYSAADVYVINSQGLG-ETFGRVTIEAMAFGVPVLGTDAGGTKEIV 664 (722)
Q Consensus 616 dv~~lysaADv~V~pS~~l~-EgfglviLEAMA~GlPVVaTd~GG~~EIV 664 (722)
.+++.+..||++|+.....+ ..+-.+--+|-..|+|++-+...|...+.
T Consensus 41 ~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~ 90 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLE 90 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHHH
Confidence 48899999999888765222 23444556667889999999877766654
No 187
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=55.69 E-value=22 Score=30.27 Aligned_cols=46 Identities=28% Similarity=0.289 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEEEcCCCC----------ChhHHHhCCcEEEEcC
Q 004942 256 GAPLSMMELATELLSCGATVSAVVLSKRGG----------LMPELARRKIKVLEDR 301 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ls~~g~----------l~~el~~~gI~Vl~~~ 301 (722)
|+...-+|+|..|.+.|.+|+++.....-. +.+.+.+.||+++...
T Consensus 6 GgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~ 61 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNT 61 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESE
T ss_pred CcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 455667899999999999999998443321 2345678899988643
No 188
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=55.19 E-value=3.7e+02 Score=30.71 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=34.0
Q ss_pred cEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC
Q 004942 607 AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA 657 (722)
Q Consensus 607 ~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~ 657 (722)
.+..++++ ++...++..||+-++= +|- ..+.|.-+|+|.|=.-.
T Consensus 245 ~l~~lPF~~Q~~yD~LLw~cD~NfVR----GED---SfVRAqwAgkPFvWhIY 290 (374)
T PF10093_consen 245 TLHVLPFVPQDDYDRLLWACDFNFVR----GED---SFVRAQWAGKPFVWHIY 290 (374)
T ss_pred EEEECCCCCHHHHHHHHHhCccceEe----cch---HHHHHHHhCCCceEecC
Confidence 57777864 8999999999995543 333 47889999999998743
No 189
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=55.10 E-value=22 Score=40.16 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=50.1
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC-C-hhHHH--hCCcEEEEcCCcc---chhh
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-L-MPELA--RRKIKVLEDRGEP---SFKT 308 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~-l-~~el~--~~gI~Vl~~~~~~---~~~~ 308 (722)
+..++..||++++. .+.....+++.|.++|.+|..+....... . ...+. ..+..++...... +..+
T Consensus 268 ~~~~l~Gkrv~i~g-------d~~~~~~l~~~L~elGm~~v~~~t~~~~~~~~~~~~~~l~~~~~v~~~~d~~~l~~~i~ 340 (407)
T TIGR01279 268 HTQLLRGKKIFFFG-------DNLLELPLARFLKRCGMEVVECGTPYIHRRFHAAELALLEGGVRIVEQPDFHRQLQRIR 340 (407)
T ss_pred HHHhcCCCEEEEEC-------CchHHHHHHHHHHHCCCEEEEecCCCCChHHHHHHHhhcCCCCeEEeCCCHHHHHHHHH
Confidence 44567788988753 35677889999999999998887433221 2 22222 2245565543322 5556
Q ss_pred hcCccEEEECC
Q 004942 309 SMKADLVIAGS 319 (722)
Q Consensus 309 ~~k~DlVia~S 319 (722)
+.+||++|.|+
T Consensus 341 ~~~pDllig~~ 351 (407)
T TIGR01279 341 ATRPDLVVTGL 351 (407)
T ss_pred hcCCCEEecCc
Confidence 88999999997
No 190
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=54.36 E-value=41 Score=36.73 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEEEcCCC-----------CChhHHHhCCcEEEEcCCcc-----chhhhcCccEEEEC
Q 004942 256 GAPLSMMELATELLSCGATVSAVVLSKRG-----------GLMPELARRKIKVLEDRGEP-----SFKTSMKADLVIAG 318 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ls~~g-----------~l~~el~~~gI~Vl~~~~~~-----~~~~~~k~DlVia~ 318 (722)
|.+-+.....++|.+.|++|..|+...+. .+.....+.||+++...... ....+.+||++++.
T Consensus 7 Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~l~~~~~Dliv~~ 85 (313)
T TIGR00460 7 GTPTFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPLVRELKPDVIVVV 85 (313)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHHHHhhCCCEEEEc
Confidence 55666777888899999999877643321 13344557899998754432 34457899999544
No 191
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=53.13 E-value=49 Score=35.51 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=20.5
Q ss_pred CCc-HHHH-HHHHHHHHHhCCCEEEEEE
Q 004942 254 MTG-APLS-MMELATELLSCGATVSAVV 279 (722)
Q Consensus 254 ~gG-apls-m~eLA~eL~s~G~~VsvV~ 279 (722)
.+| +.++ .+.+|.+|.+ ||+|.+++
T Consensus 8 g~G~GH~~r~~ala~~L~~-g~ev~~~~ 34 (321)
T TIGR00661 8 GEGFGHTTRSVAIGEALKN-DYEVSYIA 34 (321)
T ss_pred ccCccHHHHHHHHHHHHhC-CCeEEEEE
Confidence 455 5555 8889999999 99999987
No 192
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=52.19 E-value=38 Score=34.68 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=39.3
Q ss_pred ccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhC-CcEEEEcCCccchhhhcCccEEEEC
Q 004942 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR-KIKVLEDRGEPSFKTSMKADLVIAG 318 (722)
Q Consensus 240 ~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~-gI~Vl~~~~~~~~~~~~k~DlVia~ 318 (722)
+..+++++| ||+.+ ....|+.|.+.|++|++|.......+ .++... .+.+....... ..-..+|+||+.
T Consensus 8 l~~k~vLVI------GgG~v-a~~ka~~Ll~~ga~V~VIs~~~~~~l-~~l~~~~~i~~~~~~~~~--~~l~~adlViaa 77 (202)
T PRK06718 8 LSNKRVVIV------GGGKV-AGRRAITLLKYGAHIVVISPELTENL-VKLVEEGKIRWKQKEFEP--SDIVDAFLVIAA 77 (202)
T ss_pred cCCCEEEEE------CCCHH-HHHHHHHHHHCCCeEEEEcCCCCHHH-HHHHhCCCEEEEecCCCh--hhcCCceEEEEc
Confidence 345777766 44444 46678899999999999973222222 233333 34443321111 113467888776
Q ss_pred C
Q 004942 319 S 319 (722)
Q Consensus 319 S 319 (722)
+
T Consensus 78 T 78 (202)
T PRK06718 78 T 78 (202)
T ss_pred C
Confidence 4
No 193
>PLN03015 UDP-glucosyl transferase
Probab=51.14 E-value=59 Score=37.82 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCEEEcCC----CChhhhh-ccCccEEEEC----CCCccHHHHHHHHHHhhc
Q 004942 640 RVTIEAMAFGVPVLGTDA----GGTKEIV-EHNVTGLLHP----PGHPGAQVLAQNLRYLLK 692 (722)
Q Consensus 640 lviLEAMA~GlPVVaTd~----GG~~EIV-e~g~tGlLvp----~~d~~~e~LA~aI~~LL~ 692 (722)
+.++||+++|+|+|+-.. .-....+ +.-..|+-.. .+..+.++++++|+.++.
T Consensus 364 nS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 364 SSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVA 425 (470)
T ss_pred hhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHc
Confidence 589999999999999654 2223333 3334555552 123455899999999995
No 194
>COG1647 Esterase/lipase [General function prediction only]
Probab=50.92 E-value=26 Score=37.28 Aligned_cols=56 Identities=23% Similarity=0.285 Sum_probs=42.2
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEE
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL 298 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl 298 (722)
.+.+.+|+.| +.||.|.-+-.|+++|.++|++|++=.+..-|-...++...+.+.+
T Consensus 13 ~G~~AVLllH--GFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW 68 (243)
T COG1647 13 GGNRAVLLLH--GFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW 68 (243)
T ss_pred cCCEEEEEEe--ccCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH
Confidence 3468888889 6789999999999999999999988775554555556655554433
No 195
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=50.79 E-value=54 Score=32.49 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=49.0
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCh-------hHHHhCCcEEEEcCCccchh-hhcCc
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM-------PELARRKIKVLEDRGEPSFK-TSMKA 312 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~-------~el~~~gI~Vl~~~~~~~~~-~~~k~ 312 (722)
..++|+++.-....||-.+. +|+.|.+.|++|.++.......+. ..++..|++++......... ....+
T Consensus 24 ~~~~v~il~G~GnNGgDgl~---~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 100 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLV---AARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPA 100 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHH---HHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCE
T ss_pred CCCeEEEEECCCCChHHHHH---HHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccc
Confidence 45788888887777777665 588899999999997665544332 33568899998765554332 23388
Q ss_pred cEEEE
Q 004942 313 DLVIA 317 (722)
Q Consensus 313 DlVia 317 (722)
|+||-
T Consensus 101 dlIID 105 (169)
T PF03853_consen 101 DLIID 105 (169)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 99844
No 196
>PRK05993 short chain dehydrogenase; Provisional
Probab=50.69 E-value=57 Score=33.96 Aligned_cols=61 Identities=15% Similarity=0.034 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-----chhh----h--cCccEEEECCc
Q 004942 258 PLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-----SFKT----S--MKADLVIAGSA 320 (722)
Q Consensus 258 plsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-----~~~~----~--~k~DlVia~Sa 320 (722)
.-.-..+|+.|.+.|++|.++. +......++...++.++..+... .+.. . .++|+++.+..
T Consensus 14 ggiG~~la~~l~~~G~~Vi~~~--r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~~Ag 85 (277)
T PRK05993 14 SGIGAYCARALQSDGWRVFATC--RKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFNNGA 85 (277)
T ss_pred cHHHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEECCC
Confidence 3334557889999999988876 33333455666677776554432 1111 1 36799877643
No 197
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.99 E-value=67 Score=36.63 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=48.7
Q ss_pred hhhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC---ChhHHHhCCcEEEEcCCccchhhhcC
Q 004942 235 DFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG---LMPELARRKIKVLEDRGEPSFKTSMK 311 (722)
Q Consensus 235 ~f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~---l~~el~~~gI~Vl~~~~~~~~~~~~k 311 (722)
+|..+...++|+++ +.|++. +.+|+.|.+.|++|++.-...... ...++...|+.+..-...... -.+
T Consensus 7 ~~~~~~~~~~i~v~----G~G~sG---~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~--~~~ 77 (458)
T PRK01710 7 EFKKFIKNKKVAVV----GIGVSN---IPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDK--LDG 77 (458)
T ss_pred HHhhhhcCCeEEEE----cccHHH---HHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHH--hcc
Confidence 46666666777655 233333 367888999999988865222112 123577789988754332221 146
Q ss_pred ccEEEECCchh
Q 004942 312 ADLVIAGSAVC 322 (722)
Q Consensus 312 ~DlVia~Sav~ 322 (722)
+|+|+...++.
T Consensus 78 ~dlVV~Spgi~ 88 (458)
T PRK01710 78 FDVIFKTPSMR 88 (458)
T ss_pred CCEEEECCCCC
Confidence 89998886654
No 198
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=49.96 E-value=41 Score=36.58 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEEEcCCC-----------CChhHHHhCCcEEEEcCCc--c---chhhhcCccEEEE
Q 004942 256 GAPLSMMELATELLSCGATVSAVVLSKRG-----------GLMPELARRKIKVLEDRGE--P---SFKTSMKADLVIA 317 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ls~~g-----------~l~~el~~~gI~Vl~~~~~--~---~~~~~~k~DlVia 317 (722)
|.+-+.....++|.+.|+++..|+...+. .+.+.+.+.||+++....- . ....+.+||++++
T Consensus 7 G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~~~~~~l~~~~~Dliv~ 84 (309)
T PRK00005 7 GTPEFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDPEFLAELAALNADVIVV 84 (309)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCHHHHHHHHhcCcCEEEE
Confidence 45566777888888889998877743221 1234556889999764331 1 3445789999944
No 199
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=49.34 E-value=30 Score=39.32 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=48.7
Q ss_pred hhccccEEEEEeCCCCCCcHHHHHHHHHHHHHh-CCCEEEEEEEcCCC-CC-hhHHH--hCCcEEEEcCCcc---chhhh
Q 004942 238 RFVWSRKFILIFHELSMTGAPLSMMELATELLS-CGATVSAVVLSKRG-GL-MPELA--RRKIKVLEDRGEP---SFKTS 309 (722)
Q Consensus 238 ~~~~~kkillI~hels~gGaplsm~eLA~eL~s-~G~~VsvV~ls~~g-~l-~~el~--~~gI~Vl~~~~~~---~~~~~ 309 (722)
..+..||++++. .+.....+++.|.+ +|.+|..+...... .+ ..+++ ..++.|+...... ...++
T Consensus 286 ~~l~Gkrvai~g-------~~~~~~~la~~L~eelGm~~v~v~t~~~~~~~~~~~~~~l~~~~~v~~~~D~~~l~~~i~~ 358 (427)
T PRK02842 286 ELLRGKRVFFLP-------DSQLEIPLARFLSRECGMELVEVGTPYLNRRFLAAELALLPDGVRIVEGQDVERQLDRIRA 358 (427)
T ss_pred hhcCCcEEEEEC-------CchhHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHhccCCCEEEECCCHHHHHHHHHH
Confidence 356778887652 34567778999998 99999888743321 12 22232 2366665543322 55568
Q ss_pred cCccEEEECCc
Q 004942 310 MKADLVIAGSA 320 (722)
Q Consensus 310 ~k~DlVia~Sa 320 (722)
.+||++|.|+.
T Consensus 359 ~~pDllig~~~ 369 (427)
T PRK02842 359 LRPDLVVCGLG 369 (427)
T ss_pred cCCCEEEccCc
Confidence 89999999973
No 200
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=49.21 E-value=49 Score=38.34 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=30.3
Q ss_pred EEEEEeCCCCCCcH-------HHHHHHHHHHHHhCC-CEEEEEE
Q 004942 244 KFILIFHELSMTGA-------PLSMMELATELLSCG-ATVSAVV 279 (722)
Q Consensus 244 killI~hels~gGa-------plsm~eLA~eL~s~G-~~VsvV~ 279 (722)
||+||.+....+|+ |+.+.-||..|.+.| |+|.++=
T Consensus 1 ~illi~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD 44 (497)
T TIGR02026 1 RILILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLD 44 (497)
T ss_pred CeEEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEec
Confidence 68888887766664 788999999999999 8999985
No 201
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=48.97 E-value=60 Score=31.98 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=24.3
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEE
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ 279 (722)
..+++++| ||++ ...+.++.|.+.|++|++|.
T Consensus 12 ~~~~vlVv------GGG~-va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVII------GGGK-IAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEE------CCCH-HHHHHHHHHHhCCCEEEEEc
Confidence 45777766 4444 45778899999999999995
No 202
>PLN02207 UDP-glycosyltransferase
Probab=48.63 E-value=44 Score=38.71 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCEEEcCC----CChhhh-hccCccEEEEC-------CCCccHHHHHHHHHHhhc
Q 004942 640 RVTIEAMAFGVPVLGTDA----GGTKEI-VEHNVTGLLHP-------PGHPGAQVLAQNLRYLLK 692 (722)
Q Consensus 640 lviLEAMA~GlPVVaTd~----GG~~EI-Ve~g~tGlLvp-------~~d~~~e~LA~aI~~LL~ 692 (722)
+.++||+++|+|+|+-.. -..... ++.-..|+-+. .+-.+.++++++|+.++.
T Consensus 361 nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 361 NSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred ccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 478999999999999644 333443 33334565331 112245899999999997
No 203
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=48.36 E-value=1.1e+02 Score=29.53 Aligned_cols=79 Identities=24% Similarity=0.217 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHHh-CCCEEEEEEEcCCCCChhH----HHhCCc-EEEEcCCcc--------------chhhhcCccEE
Q 004942 256 GAPLSMMELATELLS-CGATVSAVVLSKRGGLMPE----LARRKI-KVLEDRGEP--------------SFKTSMKADLV 315 (722)
Q Consensus 256 Gaplsm~eLA~eL~s-~G~~VsvV~ls~~g~l~~e----l~~~gI-~Vl~~~~~~--------------~~~~~~k~DlV 315 (722)
-.-+-+++.|+.|.+ .|.+|.+++.....+..+. +...|+ +++....+. .+.++.+||+|
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lV 94 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLV 94 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEE
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEE
Confidence 455668889999987 5889999998743455444 555887 466554332 34447899999
Q ss_pred EECCchhhHhHHHHHHhcc
Q 004942 316 IAGSAVCATWIDQYITRFP 334 (722)
Q Consensus 316 ia~Sav~~~wi~~~i~~~~ 334 (722)
++++.....-+...++...
T Consensus 95 l~~~t~~g~~la~~lA~~L 113 (164)
T PF01012_consen 95 LFGSTSFGRDLAPRLAARL 113 (164)
T ss_dssp EEESSHHHHHHHHHHHHHH
T ss_pred EEcCcCCCCcHHHHHHHHh
Confidence 8887655444555554443
No 204
>PLN02534 UDP-glycosyltransferase
Probab=47.17 E-value=70 Score=37.34 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=46.8
Q ss_pred CcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCC-Ch---hhh-hccCccEEEECC-----
Q 004942 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG-GT---KEI-VEHNVTGLLHPP----- 675 (722)
Q Consensus 606 ~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~G-G~---~EI-Ve~g~tGlLvp~----- 675 (722)
.++...+.... ..++...++-.+-+ .+-.+.++||+++|+|+|+-... .. ... ++.=..|+-+..
T Consensus 344 ~g~~v~~w~pq-~~iL~h~~v~~fvt----H~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~ 418 (491)
T PLN02534 344 RGLLIKGWAPQ-VLILSHPAIGGFLT----HCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVR 418 (491)
T ss_pred CCeeccCCCCH-HHHhcCCccceEEe----cCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccccccc
Confidence 34444443321 34666666633323 23446899999999999997652 22 122 222233443310
Q ss_pred -------C-CccHHHHHHHHHHhhc
Q 004942 676 -------G-HPGAQVLAQNLRYLLK 692 (722)
Q Consensus 676 -------~-d~~~e~LA~aI~~LL~ 692 (722)
+ -.+.++++.++++++.
T Consensus 419 ~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 419 WGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred ccccccccCccCHHHHHHHHHHHhc
Confidence 0 1345899999999996
No 205
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.73 E-value=65 Score=36.23 Aligned_cols=72 Identities=24% Similarity=0.247 Sum_probs=44.9
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCC---hhHHHhCCcEEEEcCCccchhhhcCccEEEE
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL---MPELARRKIKVLEDRGEPSFKTSMKADLVIA 317 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l---~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia 317 (722)
..++++++ |++. .-+.+|..|.+.|++|+++.......+ ..++...|++++........ ...+|+|+.
T Consensus 4 ~~k~v~ii------G~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~d~vv~ 74 (450)
T PRK14106 4 KGKKVLVV------GAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEF--LEGVDLVVV 74 (450)
T ss_pred CCCEEEEE------CCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhH--hhcCCEEEE
Confidence 34666544 3344 445899999999999998863322222 23455668887654443322 346899988
Q ss_pred CCch
Q 004942 318 GSAV 321 (722)
Q Consensus 318 ~Sav 321 (722)
++.+
T Consensus 75 ~~g~ 78 (450)
T PRK14106 75 SPGV 78 (450)
T ss_pred CCCC
Confidence 7654
No 206
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=45.96 E-value=62 Score=34.11 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=42.0
Q ss_pred ccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcCccEEEECC
Q 004942 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (722)
Q Consensus 242 ~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~S 319 (722)
.+++|+| ||+++.. +=+..|++.|++|+||++.-...+........|.++........ -..+++||+.+
T Consensus 25 ~~~VLVV------GGG~VA~-RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~d--l~g~~LViaAT 93 (223)
T PRK05562 25 KIKVLII------GGGKAAF-IKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEF--IKDKHLIVIAT 93 (223)
T ss_pred CCEEEEE------CCCHHHH-HHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHH--hCCCcEEEECC
Confidence 3456555 6677664 44567888999999999554434433333455777764443332 24677786654
No 207
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=45.88 E-value=66 Score=35.54 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEEEcCCC-----------CChhHHHhCCcEEEEcCCcc-----chhhhcCccEEEEC
Q 004942 256 GAPLSMMELATELLSCGATVSAVVLSKRG-----------GLMPELARRKIKVLEDRGEP-----SFKTSMKADLVIAG 318 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ls~~g-----------~l~~el~~~gI~Vl~~~~~~-----~~~~~~k~DlVia~ 318 (722)
|.|-+.....++|..+||+|..|....+. +......+.||+|+.-..-. ...+..+||++++-
T Consensus 8 GTp~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~e~~~~l~~l~~D~ivvv 86 (307)
T COG0223 8 GTPEFAVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDPEFLEELAALDPDLIVVV 86 (307)
T ss_pred cCchhhHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcHHHHHHHhccCCCEEEEE
Confidence 56666666677888899999999855432 12344568899987643322 33347799999543
No 208
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=45.58 E-value=1.4e+02 Score=34.11 Aligned_cols=94 Identities=21% Similarity=0.236 Sum_probs=62.3
Q ss_pred HhcCCCCCcEEeCCc-h-hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChh-hhhcc-CccEEEEC
Q 004942 599 SQHSNLSKAMLWTPA-T-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTK-EIVEH-NVTGLLHP 674 (722)
Q Consensus 599 ~~~~~L~~~V~f~G~-~-~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~-EIVe~-g~tGlLvp 674 (722)
.++..-..+|++... . +.+-..+.++|++|-.=.| .++=||++|+|+|+-....-. .+.++ +..|+..+
T Consensus 259 a~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~H-------saI~al~~g~p~i~i~Y~~K~~~l~~~~gl~~~~~~ 331 (385)
T COG2327 259 AQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRLH-------SAIMALAFGVPAIAIAYDPKVRGLMQDLGLPGFAID 331 (385)
T ss_pred HhhcCCccceEeecchHHHHHHHHhccCceEEeehhH-------HHHHHHhcCCCeEEEeecHHHHHHHHHcCCCccccc
Confidence 333333467777753 3 4667799999998865442 688899999999997653332 33332 34567777
Q ss_pred CCCccHHHHHHHHHHhhc-CHHHHHH
Q 004942 675 PGHPGAQVLAQNLRYLLK-NPSVRER 699 (722)
Q Consensus 675 ~~d~~~e~LA~aI~~LL~-np~~r~~ 699 (722)
..+.+++.+.+.....+. +++.+++
T Consensus 332 i~~~~~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 332 IDPLDAEILSAVVLERLTKLDELRER 357 (385)
T ss_pred CCCCchHHHHHHHHHHHhccHHHHhh
Confidence 777777888877766655 5555544
No 209
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=45.07 E-value=29 Score=39.25 Aligned_cols=69 Identities=23% Similarity=0.277 Sum_probs=43.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcCccEEEECCchh
Q 004942 250 HELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (722)
Q Consensus 250 hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~Sav~ 322 (722)
|-..+||+..+. ||..|.+.|++|++.=..........+...|+++..-.....+ ...+|+|+..+++.
T Consensus 3 hfigigG~gm~~--la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~--~~~~d~vV~SpgI~ 71 (448)
T TIGR01081 3 HILGICGTFMGG--LAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQL--EPKPDLVVIGNAMK 71 (448)
T ss_pred EEEEECHHhHHH--HHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHC--CCCCCEEEECCCCC
Confidence 445778887665 9999999999997643111111223566779988752221111 12589999988774
No 210
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=44.75 E-value=72 Score=36.02 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=42.1
Q ss_pred CccHHHHHHHHhCCCEEEcC----CCC-hhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHH
Q 004942 637 TFGRVTIEAMAFGVPVLGTD----AGG-TKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAME 703 (722)
Q Consensus 637 gfglviLEAMA~GlPVVaTd----~GG-~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~ 703 (722)
|++ .++||+.+|+|+|+.. ..- ...+.+++..+++...+-.. ..+.+++..++++++..+...+-
T Consensus 363 G~n-St~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~-~~~~~~~~~il~~~~y~~~~~~l 432 (496)
T KOG1192|consen 363 GWN-STLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVS-EELLEAIKEILENEEYKEAAKRL 432 (496)
T ss_pred ccc-HHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCc-HHHHHHHHHHHcChHHHHHHHHH
Confidence 444 5699999999999643 222 34455666666665543322 34889999999988765554433
No 211
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=44.28 E-value=2.3e+02 Score=26.84 Aligned_cols=66 Identities=11% Similarity=0.184 Sum_probs=48.1
Q ss_pred cCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc-CCCChh---hhhccCccEEEECCCCccHHHHHHHHHHhhc
Q 004942 624 ADVYVINSQGLGETFGRVTIEAMAFGVPVLGT-DAGGTK---EIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (722)
Q Consensus 624 ADv~V~pS~~l~EgfglviLEAMA~GlPVVaT-d~GG~~---EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~ 692 (722)
.|++++... +.+.-|..+++.+....|||.. ...... +.+..|..|++..|-+. +.+.++|..++.
T Consensus 48 ~dlvi~d~~-~~~~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~--~~l~~~i~~~~~ 117 (196)
T PRK10360 48 VQVCICDIS-MPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSP--DELIAAVHTVAT 117 (196)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCH--HHHHHHHHHHHc
Confidence 588888764 3555677788888777888764 333222 34567889999998887 899999998875
No 212
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=42.41 E-value=1.7e+02 Score=33.68 Aligned_cols=133 Identities=16% Similarity=0.124 Sum_probs=70.7
Q ss_pred cceeEEEcCCchhHHHHHHhhhccCCCCCCchhH----HHHHHHHHhcCCCCCcEEeCCchhhHHHHHHHcCEEEEcCCC
Q 004942 558 LRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYV----KEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQG 633 (722)
Q Consensus 558 ~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~----~el~~~l~~~~~L~~~V~f~G~~~dv~~lysaADv~V~pS~~ 633 (722)
...+++++|-|..-+-.-..+..-|-. ..|+ .+-...|++.++ .... ..+++.+++..+|+++.++
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~---~i~IaNRT~erA~~La~~~~----~~~~-~l~el~~~l~~~DvVissT-- 246 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVK---KITIANRTLERAEELAKKLG----AEAV-ALEELLEALAEADVVISST-- 246 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCC---EEEEEcCCHHHHHHHHHHhC----Ceee-cHHHHHHhhhhCCEEEEec--
Confidence 457899999997655444444333311 1111 122333444433 1111 2368999999999999876
Q ss_pred CCCCccHHHHHHH----HhCCCEEEcCCCChhhhhccC--c-cEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 004942 634 LGETFGRVTIEAM----AFGVPVLGTDAGGTKEIVEHN--V-TGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRK 706 (722)
Q Consensus 634 l~EgfglviLEAM----A~GlPVVaTd~GG~~EIVe~g--~-tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk 706 (722)
+.+-+.+.-+.+ .-....+.-|.+-++++=.+- . +-+++..+|. +.+++. |-..|++...++..
T Consensus 247 -sa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~~v~~l~~v~l~~iDDL--~~iv~~------n~~~R~~~~~~ae~ 317 (414)
T COG0373 247 -SAPHPIITREMVERALKIRKRLLIVDIAVPRDVEPEVGELPNVFLYTIDDL--EEIVEE------NLEARKEEAAKAEA 317 (414)
T ss_pred -CCCccccCHHHHHHHHhcccCeEEEEecCCCCCCccccCcCCeEEEehhhH--HHHHHH------hHHHHHHHHHHHHH
Confidence 444444433333 333335777887777754431 1 2356665554 333322 44455555555555
Q ss_pred HHH
Q 004942 707 KSN 709 (722)
Q Consensus 707 ~ve 709 (722)
.++
T Consensus 318 iIe 320 (414)
T COG0373 318 IIE 320 (414)
T ss_pred HHH
Confidence 554
No 213
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=41.34 E-value=55 Score=35.55 Aligned_cols=79 Identities=20% Similarity=0.213 Sum_probs=50.9
Q ss_pred ccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcC---CCCChhHHHhCCcEEEEcCCcc------------
Q 004942 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK---RGGLMPELARRKIKVLEDRGEP------------ 304 (722)
Q Consensus 240 ~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~---~g~l~~el~~~gI~Vl~~~~~~------------ 304 (722)
+++.||....| -+.-+.-|+..|...|++|.+.+... ...-...|...||+|+.-++..
T Consensus 41 l~G~rIa~cLH------le~kTA~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V~A~~get~eey~~~i~~~L 114 (268)
T PF05221_consen 41 LKGARIAGCLH------LEAKTAVLAETLKALGAEVRWTGSNPLSTQDDVAAALAEEGIPVFAWKGETDEEYWWCIEKAL 114 (268)
T ss_dssp TTTEEEEEES--------SHHHHHHHHHHHHTTEEEEEEESSTTT--HHHHHHHHHTTEEEEE-TT--HHHHHHHHHHCH
T ss_pred CCCCEEEEEEe------chHHHHHHHHHHHHcCCeEEEecCCCcccchHHHHHhccCCceEEEeCCCCHHHHHHHHHHHh
Confidence 55689998888 66667779999999999999887221 1123345678999999988766
Q ss_pred chhhhcCccEEEECCchhhH
Q 004942 305 SFKTSMKADLVIAGSAVCAT 324 (722)
Q Consensus 305 ~~~~~~k~DlVia~Sav~~~ 324 (722)
.|....+||+|+-..+-...
T Consensus 115 ~~~~~~~P~~iiDDG~Dl~~ 134 (268)
T PF05221_consen 115 SWEDDHGPNLIIDDGGDLVN 134 (268)
T ss_dssp SESTTCE-SEEEESSSHHHH
T ss_pred cCCCCCCcceeecchHHHHH
Confidence 11113578899777554333
No 214
>PLN00142 sucrose synthase
Probab=41.29 E-value=9.5 Score=47.00 Aligned_cols=77 Identities=9% Similarity=-0.019 Sum_probs=67.0
Q ss_pred ccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhcc
Q 004942 505 LQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSV 581 (722)
Q Consensus 505 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~ 581 (722)
.++++.+.++.|-..++|++....+.+..++.+...+|++.+..++.++.....++.++.+|.-...+++..+|..+
T Consensus 519 ~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~ 595 (815)
T PLN00142 519 DPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWY 595 (815)
T ss_pred ccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHH
Confidence 45677788999998999999888899999999999999999999988887777778899999988888888888644
No 215
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=39.02 E-value=35 Score=37.37 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCC
Q 004942 261 MMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRG 302 (722)
Q Consensus 261 m~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~ 302 (722)
++.||++|.+.||+|++++. ..+.+.+...|+.++..+.
T Consensus 12 ~l~lA~~L~~~Gh~V~~~~~---~~~~~~v~~~G~~~~~~~~ 50 (392)
T TIGR01426 12 TLGVVEELVARGHRVTYATT---EEFAERVEAAGAEFVLYGS 50 (392)
T ss_pred cHHHHHHHHhCCCeEEEEeC---HHHHHHHHHcCCEEEecCC
Confidence 88999999999999999993 4466667788998876654
No 216
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.96 E-value=78 Score=36.43 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=58.1
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCC--C---CChhHHHhCCcEEEEcCCcc----------c
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR--G---GLMPELARRKIKVLEDRGEP----------S 305 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~--g---~l~~el~~~gI~Vl~~~~~~----------~ 305 (722)
+.+.-++++-.|..+|-.-+.-.||..+.+.|+.+.+||...- + .+.+...+.+|+++....+. .
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 3344555667788889999999999999999999999995432 2 24444568899999754433 1
Q ss_pred hhhhcCccEEEECCc
Q 004942 306 FKTSMKADLVIAGSA 320 (722)
Q Consensus 306 ~~~~~k~DlVia~Sa 320 (722)
-.+..++|+||+.++
T Consensus 178 ~fKke~fdvIIvDTS 192 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTS 192 (483)
T ss_pred HHHhcCCcEEEEeCC
Confidence 112678999999764
No 217
>PLN02285 methionyl-tRNA formyltransferase
Probab=38.29 E-value=88 Score=34.67 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=38.2
Q ss_pred ccEEEEEeCCCCCCcHHHHHHHHHHHHHh------CCCEEEEEEEcCCCC-----------ChhHHHhCCcE---EEEcC
Q 004942 242 SRKFILIFHELSMTGAPLSMMELATELLS------CGATVSAVVLSKRGG-----------LMPELARRKIK---VLEDR 301 (722)
Q Consensus 242 ~kkillI~hels~gGaplsm~eLA~eL~s------~G~~VsvV~ls~~g~-----------l~~el~~~gI~---Vl~~~ 301 (722)
+.||+++ |.+-+.....++|.. .+++|..|+...+.. ......+.||+ ++.-.
T Consensus 6 ~~kI~f~-------Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~ 78 (334)
T PLN02285 6 KKRLVFL-------GTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPE 78 (334)
T ss_pred ccEEEEE-------ECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCcc
Confidence 4677766 344444444445544 478888887554332 23455688999 43211
Q ss_pred C--cc---chhhhcCccEE
Q 004942 302 G--EP---SFKTSMKADLV 315 (722)
Q Consensus 302 ~--~~---~~~~~~k~DlV 315 (722)
. +. ...++.+||++
T Consensus 79 ~~~~~~~~~~l~~~~~Dli 97 (334)
T PLN02285 79 KAGEEDFLSALRELQPDLC 97 (334)
T ss_pred ccCCHHHHHHHHhhCCCEE
Confidence 1 11 23447899999
No 218
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=38.00 E-value=85 Score=37.58 Aligned_cols=63 Identities=14% Similarity=0.037 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEEEcCCC--------CChhHHHhCCcEEEEcCCcc-----chhhhcCccEEEEC
Q 004942 256 GAPLSMMELATELLSCGATVSAVVLSKRG--------GLMPELARRKIKVLEDRGEP-----SFKTSMKADLVIAG 318 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ls~~g--------~l~~el~~~gI~Vl~~~~~~-----~~~~~~k~DlVia~ 318 (722)
|.|-+.....++|.+.|++|.+|....+. .+.....+.||+++...... ...++.+||++++.
T Consensus 7 g~~~~a~~~l~~L~~~~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~D~iv~~ 82 (660)
T PRK08125 7 AYHDIGCVGIEALLAAGYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVNHPLWVERIRELAPDVIFSF 82 (660)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCCcHHHHHHHHhcCCCEEEEc
Confidence 45656666667888899999966533221 12344568899998644321 34457899999654
No 219
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=37.70 E-value=92 Score=35.72 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=53.1
Q ss_pred ccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcC---CCCChhHHHhCCcEEEEcCCcc--ch----hh--
Q 004942 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK---RGGLMPELARRKIKVLEDRGEP--SF----KT-- 308 (722)
Q Consensus 240 ~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~---~g~l~~el~~~gI~Vl~~~~~~--~~----~~-- 308 (722)
++..||....| -+.-+.-|+..|...|++|.+..... .......|...||+|+..+... .+ ..
T Consensus 34 ~~g~~i~~~~h------l~~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~l~~~gi~v~a~~~~~~~~y~~~~~~~l 107 (413)
T cd00401 34 LKGARIAGCLH------MTVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAAAGIPVFAWKGETLEEYWWCIEQAL 107 (413)
T ss_pred CCCCEEEEEEc------chHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCceEEEEcCCCHHHHHHHHHHHH
Confidence 56789999999 77778889999999999998876322 1223345678999999877654 11 11
Q ss_pred hc---CccEEEECCc
Q 004942 309 SM---KADLVIAGSA 320 (722)
Q Consensus 309 ~~---k~DlVia~Sa 320 (722)
.. +||+++=..+
T Consensus 108 ~~~~~~p~~i~DdGg 122 (413)
T cd00401 108 KFPDGEPNMILDDGG 122 (413)
T ss_pred hccCCCCcEEEecch
Confidence 22 7888865543
No 220
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=37.47 E-value=95 Score=34.21 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=28.3
Q ss_pred EEEeCCCCCCcHHHH--HHHHHHHHHhCCCEEEEEE
Q 004942 246 ILIFHELSMTGAPLS--MMELATELLSCGATVSAVV 279 (722)
Q Consensus 246 llI~hels~gGapls--m~eLA~eL~s~G~~VsvV~ 279 (722)
++..-++++||+... +..||+.|.++|+.|.|++
T Consensus 30 VIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 65 (311)
T TIGR00682 30 VVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLS 65 (311)
T ss_pred EEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEEC
Confidence 445678998887664 7789999999999999998
No 221
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=37.45 E-value=1.5e+02 Score=34.19 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=52.2
Q ss_pred ccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcC---CCCChhHHHhCCcEEEEcCCcc------chh---
Q 004942 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK---RGGLMPELARRKIKVLEDRGEP------SFK--- 307 (722)
Q Consensus 240 ~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~---~g~l~~el~~~gI~Vl~~~~~~------~~~--- 307 (722)
+...||....| ...-+..|+..|...|++|.+..+.. ...-...|...||+|+..+... .+.
T Consensus 46 l~G~~i~~~~H------l~~~Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l 119 (425)
T PRK05476 46 LKGARIAGCLH------MTIQTAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIPVFAWKGETLEEYWECIERAL 119 (425)
T ss_pred CCCCEEEEEEe------ccccHHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCceEEecCCCCHHHHHHHHHHHh
Confidence 56689999999 66667789999999999999887322 1223345678899999876543 111
Q ss_pred hhcCccEEEECCch
Q 004942 308 TSMKADLVIAGSAV 321 (722)
Q Consensus 308 ~~~k~DlVia~Sav 321 (722)
...+||+++=..+-
T Consensus 120 ~~~~p~iiiDdGgd 133 (425)
T PRK05476 120 DGHGPNMILDDGGD 133 (425)
T ss_pred cCCCCCEEEecccH
Confidence 14567777555433
No 222
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=35.94 E-value=1.2e+02 Score=34.93 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=44.7
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC-ChhHH---HhCCcEEEEcCCcc---chhh
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMPEL---ARRKIKVLEDRGEP---SFKT 308 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~-l~~el---~~~gI~Vl~~~~~~---~~~~ 308 (722)
+...+..+++++... . -....+++.|..+|.+|.++....... ....+ ...++.++...... .+..
T Consensus 320 ~~~~L~Gkrv~i~~g------~-~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~~~~v~~~~d~~e~~~~i~ 392 (456)
T TIGR01283 320 YRERLKGKKAAIYTG------G-VKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELMGEGTVMLDDANPRELLKLLL 392 (456)
T ss_pred HHHHcCCCEEEEEcC------C-chHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCCCeEEEeCCCHHHHHHHHh
Confidence 444567788875432 1 345677888899999998875332211 11122 22345444432222 4556
Q ss_pred hcCccEEEECC
Q 004942 309 SMKADLVIAGS 319 (722)
Q Consensus 309 ~~k~DlVia~S 319 (722)
+.+||++|.++
T Consensus 393 ~~~pDl~ig~~ 403 (456)
T TIGR01283 393 EYKADLLIAGG 403 (456)
T ss_pred hcCCCEEEEcc
Confidence 88999998774
No 223
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=35.78 E-value=1.5e+02 Score=33.50 Aligned_cols=76 Identities=18% Similarity=0.127 Sum_probs=47.7
Q ss_pred hhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCC-hhHH------HhCCcEEEEcCCcc---chh
Q 004942 238 RFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL-MPEL------ARRKIKVLEDRGEP---SFK 307 (722)
Q Consensus 238 ~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l-~~el------~~~gI~Vl~~~~~~---~~~ 307 (722)
.....+|+++.. .+-.+..|++.|.+.|.+|..++....... ...+ ......++...... ...
T Consensus 295 ~~l~gk~v~i~~-------~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~el~~~i 367 (428)
T cd01965 295 FYLGGKRVAIAG-------DPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLESLA 367 (428)
T ss_pred HHhcCCEEEEEc-------ChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEECCCHHHHHHHh
Confidence 356778888663 345678899999999999988875544332 2221 12233344443322 344
Q ss_pred hhcCccEEEECCc
Q 004942 308 TSMKADLVIAGSA 320 (722)
Q Consensus 308 ~~~k~DlVia~Sa 320 (722)
++.+||+++.++.
T Consensus 368 ~~~~pdliig~~~ 380 (428)
T cd01965 368 KEEPVDLLIGNSH 380 (428)
T ss_pred hccCCCEEEECch
Confidence 5778999988864
No 224
>PRK06182 short chain dehydrogenase; Validated
Probab=35.75 E-value=1.2e+02 Score=31.31 Aligned_cols=59 Identities=22% Similarity=0.189 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--chhh--------hcCccEEEECCc
Q 004942 260 SMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT--------SMKADLVIAGSA 320 (722)
Q Consensus 260 sm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~~~~--------~~k~DlVia~Sa 320 (722)
.-..+|+.|.+.|++|.++. +...-..++...++.++..+... .+.. ..++|++|.+..
T Consensus 15 iG~~la~~l~~~G~~V~~~~--r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ag 83 (273)
T PRK06182 15 IGKATARRLAAQGYTVYGAA--RRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNNAG 83 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 34557889999999998876 32222334545567776544322 1111 237899877754
No 225
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=35.64 E-value=1.5e+02 Score=30.57 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCC--CEEEEEEEcC-CCCChhHHHhCCcEEEEcCCc---------c---chhhhcCccEE
Q 004942 261 MMELATELLSCG--ATVSAVVLSK-RGGLMPELARRKIKVLEDRGE---------P---SFKTSMKADLV 315 (722)
Q Consensus 261 m~eLA~eL~s~G--~~VsvV~ls~-~g~l~~el~~~gI~Vl~~~~~---------~---~~~~~~k~DlV 315 (722)
+..+.+++.+.+ ++|.+|...+ .........+.||+++..... . ...+..+||++
T Consensus 15 ~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~i 84 (200)
T PRK05647 15 LQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLV 84 (200)
T ss_pred HHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCcCEE
Confidence 445666676654 6777665443 334455667889999873311 1 23347899999
No 226
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=35.36 E-value=1.9e+02 Score=33.02 Aligned_cols=78 Identities=23% Similarity=0.253 Sum_probs=48.6
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC-ChhH----HHh----CCcEEEEcCCcc--
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMPE----LAR----RKIKVLEDRGEP-- 304 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~-l~~e----l~~----~gI~Vl~~~~~~-- 304 (722)
+......+|+++.. .+-.+..|++.|.++|.+|..+....... +..+ +.. .++.|+......
T Consensus 297 ~~~~l~gkrv~i~g-------~~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~ 369 (435)
T cd01974 297 SHQYLHGKKFALYG-------DPDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHL 369 (435)
T ss_pred HHHhcCCCEEEEEc-------ChHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHH
Confidence 34456778887663 34568889999999999997776433222 2222 222 245565533322
Q ss_pred -chhhhcCccEEEECCc
Q 004942 305 -SFKTSMKADLVIAGSA 320 (722)
Q Consensus 305 -~~~~~~k~DlVia~Sa 320 (722)
....+.+||++|.+|.
T Consensus 370 ~~~i~~~~pDliiG~s~ 386 (435)
T cd01974 370 RSLLFTEPVDLLIGNTY 386 (435)
T ss_pred HHHHhhcCCCEEEECcc
Confidence 3445789999988864
No 227
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.32 E-value=1.3e+02 Score=32.19 Aligned_cols=73 Identities=26% Similarity=0.166 Sum_probs=52.0
Q ss_pred ccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHH-hCCcEEEEcCCcc--------chh---hh
Q 004942 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA-RRKIKVLEDRGEP--------SFK---TS 309 (722)
Q Consensus 242 ~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~-~~gI~Vl~~~~~~--------~~~---~~ 309 (722)
--++++|+.. +.||.. .+||+++.+.|+.|.+.+ +.-..|..|+ ..|++++.++... +.. +.
T Consensus 6 ~~k~VlItgc-s~GGIG---~ala~ef~~~G~~V~Ata--R~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~ 79 (289)
T KOG1209|consen 6 QPKKVLITGC-SSGGIG---YALAKEFARNGYLVYATA--RRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPD 79 (289)
T ss_pred CCCeEEEeec-CCcchh---HHHHHHHHhCCeEEEEEc--cccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCC
Confidence 3466777653 444443 568999999999998876 5567788887 8899999887654 222 24
Q ss_pred cCccEEEECCc
Q 004942 310 MKADLVIAGSA 320 (722)
Q Consensus 310 ~k~DlVia~Sa 320 (722)
-+.|+++.|..
T Consensus 80 Gkld~L~NNAG 90 (289)
T KOG1209|consen 80 GKLDLLYNNAG 90 (289)
T ss_pred CceEEEEcCCC
Confidence 68899988753
No 228
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.25 E-value=1.3e+02 Score=34.44 Aligned_cols=72 Identities=21% Similarity=0.162 Sum_probs=44.7
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCC---CChhHHHhCCcEEEEcCCccchhhhcCccEEEE
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG---GLMPELARRKIKVLEDRGEPSFKTSMKADLVIA 317 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g---~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia 317 (722)
..++++++ +.|+ +-+++|..|.+.|++|+++-..... .+...+...||+++.-.... ....+|+|+.
T Consensus 15 ~~~~v~vi----G~G~---~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D~Vv~ 84 (480)
T PRK01438 15 QGLRVVVA----GLGV---SGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT---LPEDTDLVVT 84 (480)
T ss_pred CCCEEEEE----CCCH---HHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc---ccCCCCEEEE
Confidence 34666665 2233 3345789999999999887522211 12345778899987633221 3456899988
Q ss_pred CCchh
Q 004942 318 GSAVC 322 (722)
Q Consensus 318 ~Sav~ 322 (722)
...+.
T Consensus 85 s~Gi~ 89 (480)
T PRK01438 85 SPGWR 89 (480)
T ss_pred CCCcC
Confidence 87653
No 229
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=35.02 E-value=1.4e+02 Score=33.43 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=46.7
Q ss_pred hhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCC-CCC-hhHHH--hCCcEEEEcCCcc---chhhh
Q 004942 237 ARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR-GGL-MPELA--RRKIKVLEDRGEP---SFKTS 309 (722)
Q Consensus 237 ~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~-g~l-~~el~--~~gI~Vl~~~~~~---~~~~~ 309 (722)
......||++++.. +.....+++.|.++|.+|..+..... ... ...++ ..++.+....... ...++
T Consensus 271 ~~~l~Gkrv~i~g~-------~~~~~~la~~L~elGm~vv~~~t~~~~~~~~~~~~~~l~~~~~v~~~~d~~~l~~~i~~ 343 (396)
T cd01979 271 LDLLRGKSIFFMGD-------NLLEIPLARFLTRCGMIVVEVGTPYLDKRFQAAELELLPPMVRIVEKPDNYRQLDRIRE 343 (396)
T ss_pred HHhhcCCEEEEECC-------chHHHHHHHHHHHCCCEEEeeCCCcCChHHHHHHHHhcCCCCeEEECCCHHHHHHHHHh
Confidence 33567788876532 44677889999999999988863221 111 11222 2456665543322 44568
Q ss_pred cCccEEEEC
Q 004942 310 MKADLVIAG 318 (722)
Q Consensus 310 ~k~DlVia~ 318 (722)
.+||++|.|
T Consensus 344 ~~pDlli~~ 352 (396)
T cd01979 344 LRPDLVVTG 352 (396)
T ss_pred cCCCEEEec
Confidence 899999987
No 230
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=35.02 E-value=2.1e+02 Score=33.19 Aligned_cols=58 Identities=10% Similarity=0.129 Sum_probs=45.3
Q ss_pred hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCC-CEEEcCC--CChhhhhccCccEEEEC
Q 004942 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV-PVLGTDA--GGTKEIVEHNVTGLLHP 674 (722)
Q Consensus 615 ~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~Gl-PVVaTd~--GG~~EIVe~g~tGlLvp 674 (722)
..+.+.+..+-..++|.- .+...-.+.||+..|| |||-+|. ....++++-...++.++
T Consensus 335 ~~y~~~m~~S~FCL~p~G--d~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~ 395 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPG--DTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVP 395 (464)
T ss_pred chHHHHhhcCeEEECCCC--CCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEE
Confidence 467889999999998884 6667778999999999 9999986 44555666556667776
No 231
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=34.99 E-value=88 Score=32.62 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=37.4
Q ss_pred ccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHH
Q 004942 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL 290 (722)
Q Consensus 242 ~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el 290 (722)
.++|+++.-....||-.+.+ |+.|...|++|.++.+..+.....+.
T Consensus 49 ~~~v~vlcG~GnNGGDG~Va---AR~L~~~G~~V~v~~~~~~~~~~~~~ 94 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVA---ARHLKAAGYAVTVLLLGDPKKLKTEA 94 (203)
T ss_pred CCEEEEEECCCCccHHHHHH---HHHHHhCCCceEEEEeCCCCCccHHH
Confidence 47899999999999998875 88899999999999977666544443
No 232
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=34.90 E-value=52 Score=38.06 Aligned_cols=80 Identities=13% Similarity=0.212 Sum_probs=48.4
Q ss_pred chhhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCC-hhHH---HhCCcEEEEcCCcc---ch
Q 004942 234 GDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL-MPEL---ARRKIKVLEDRGEP---SF 306 (722)
Q Consensus 234 ~~f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l-~~el---~~~gI~Vl~~~~~~---~~ 306 (722)
.++.+.+..+++++... + -....|++.|..+|.+|..+........ ...+ ...+..++.+.... ..
T Consensus 316 ~~~~~~l~Gk~vaI~~~------~-~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~~~~~v~~d~~~~e~~~~ 388 (475)
T PRK14478 316 EPYRPRLEGKRVLLYTG------G-VKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMGPDAHMIDDANPRELYKM 388 (475)
T ss_pred HHHHHHhCCCEEEEEcC------C-chHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcCCCcEEEeCCCHHHHHHH
Confidence 34556678889976422 2 3456788888899999998875443221 1122 22344454443233 33
Q ss_pred hhhcCccEEEECCc
Q 004942 307 KTSMKADLVIAGSA 320 (722)
Q Consensus 307 ~~~~k~DlVia~Sa 320 (722)
..+.+||+++.++.
T Consensus 389 i~~~~pDliig~s~ 402 (475)
T PRK14478 389 LKEAKADIMLSGGR 402 (475)
T ss_pred HhhcCCCEEEecCc
Confidence 45789999988853
No 233
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=34.61 E-value=50 Score=37.79 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=46.8
Q ss_pred hhhhhccccEEEEEeCCCCCCcHHHHHHHHHH-HHHhCCCEEEEEEEcC--CCCChhHHHhCCc-EEEEcCCcc----ch
Q 004942 235 DFARFVWSRKFILIFHELSMTGAPLSMMELAT-ELLSCGATVSAVVLSK--RGGLMPELARRKI-KVLEDRGEP----SF 306 (722)
Q Consensus 235 ~f~~~~~~kkillI~hels~gGaplsm~eLA~-eL~s~G~~VsvV~ls~--~g~l~~el~~~gI-~Vl~~~~~~----~~ 306 (722)
++...+..+|+++... .+ ..+.+++ .+..+|.+|..+.... ...+.+++....- +++...... ..
T Consensus 310 ~~~~~l~gkrvai~~~------~~-~~~~~~~~ll~elGm~v~~~~~~~~~~~~~~~~l~~l~~~~~~v~~~~~~e~~~~ 382 (443)
T TIGR01862 310 YYKERLQGKRVCLYIG------GS-RLWHWIGSAEEDLGMEVVAVGYEFAHEDDYEKTMKRMGEGTLLIDDPNELEFEEI 382 (443)
T ss_pred HHHHHhcCCeEEEECC------ch-hHHHHHHHHHHHCCCEEEEeccccccHHHHHHHHHhCCCceEEecCCCHHHHHHH
Confidence 3555677888887532 22 3446777 6667999998885332 2224445544332 444333322 33
Q ss_pred hhhcCccEEEECCc
Q 004942 307 KTSMKADLVIAGSA 320 (722)
Q Consensus 307 ~~~~k~DlVia~Sa 320 (722)
..+.+||++|.+|.
T Consensus 383 i~~~~pdllig~s~ 396 (443)
T TIGR01862 383 LEKLKPDIIFSGIK 396 (443)
T ss_pred HHhcCCCEEEEcCc
Confidence 45789999988863
No 234
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=34.58 E-value=76 Score=36.27 Aligned_cols=77 Identities=26% Similarity=0.267 Sum_probs=48.3
Q ss_pred hhhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--chhhhcCc
Q 004942 235 DFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKTSMKA 312 (722)
Q Consensus 235 ~f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~~~~~~k~ 312 (722)
++..+...+|+++.. .+-.+..|++.|...|.+|..+......+....+... .++..+... ...++.+|
T Consensus 304 ~~~~~l~Gkrvai~~-------~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~~~~--~~~~~D~~~l~~~i~~~~~ 374 (432)
T TIGR01285 304 DTHFFLGGKKVAIAA-------EPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQKLPVE--TVVIGDLEDLEDLACAAGA 374 (432)
T ss_pred HHHHhhCCCEEEEEc-------CHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhCCcC--cEEeCCHHHHHHHHhhcCC
Confidence 344566788987664 3346678899999999999999866554433332221 222222211 44557889
Q ss_pred cEEEECCc
Q 004942 313 DLVIAGSA 320 (722)
Q Consensus 313 DlVia~Sa 320 (722)
|++|.+|.
T Consensus 375 dliig~s~ 382 (432)
T TIGR01285 375 DLLITNSH 382 (432)
T ss_pred CEEEECcc
Confidence 99988864
No 235
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=34.30 E-value=1.1e+02 Score=31.14 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCCC--EEEEEEEcCC-CCChhHHHhCCcEEEEcCCc---------c---chhhhcCccEEEE
Q 004942 260 SMMELATELLSCGA--TVSAVVLSKR-GGLMPELARRKIKVLEDRGE---------P---SFKTSMKADLVIA 317 (722)
Q Consensus 260 sm~eLA~eL~s~G~--~VsvV~ls~~-g~l~~el~~~gI~Vl~~~~~---------~---~~~~~~k~DlVia 317 (722)
.+..+...+.+.+. +|.+|...++ ......+.+.||+++..... . .+.++.+||++++
T Consensus 13 ~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~ 85 (190)
T TIGR00639 13 NLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVL 85 (190)
T ss_pred hHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEE
Confidence 34556777766554 7777665543 33345567889999863211 1 3344779999944
No 236
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=33.62 E-value=1.4e+02 Score=33.36 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=28.9
Q ss_pred EEEeCCCCCCcHHHH--HHHHHHHHHhCCCEEEEEEE
Q 004942 246 ILIFHELSMTGAPLS--MMELATELLSCGATVSAVVL 280 (722)
Q Consensus 246 llI~hels~gGapls--m~eLA~eL~s~G~~VsvV~l 280 (722)
++..-+++.||+... +.-||+.|.++|+.|.|++-
T Consensus 58 VIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSR 94 (338)
T PRK01906 58 VVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSR 94 (338)
T ss_pred EEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEec
Confidence 456688999987664 77899999999999999983
No 237
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=33.26 E-value=1e+02 Score=34.14 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=29.1
Q ss_pred EEEeCCCCCCcHHHH--HHHHHHHHHhCCCEEEEEEEc
Q 004942 246 ILIFHELSMTGAPLS--MMELATELLSCGATVSAVVLS 281 (722)
Q Consensus 246 llI~hels~gGapls--m~eLA~eL~s~G~~VsvV~ls 281 (722)
++..-++++||+... +..||+.|.+.|+.|.|++-.
T Consensus 37 VIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRG 74 (326)
T PF02606_consen 37 VISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRG 74 (326)
T ss_pred EEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCC
Confidence 445578988887654 778999999999999999843
No 238
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=32.80 E-value=1.1e+02 Score=30.82 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCC--cEEEEcCCcc--chh-------h-hcCccEEEECCc
Q 004942 257 APLSMMELATELLSCGATVSAVVLSKRGGLMPELARRK--IKVLEDRGEP--SFK-------T-SMKADLVIAGSA 320 (722)
Q Consensus 257 aplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~g--I~Vl~~~~~~--~~~-------~-~~k~DlVia~Sa 320 (722)
+.-.-..+|++|.+.|++|.++.-.........+...+ +.++..+... .+. . .-++|++|.+..
T Consensus 14 s~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag 89 (248)
T TIGR01832 14 NTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHIDILVNNAG 89 (248)
T ss_pred CchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 33445668899999999988886222112233333333 3444433322 111 1 136898877653
No 239
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=32.74 E-value=99 Score=31.49 Aligned_cols=58 Identities=24% Similarity=0.222 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhh-----hcCccEEEECCchh
Q 004942 260 SMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKT-----SMKADLVIAGSAVC 322 (722)
Q Consensus 260 sm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~-----~~k~DlVia~Sav~ 322 (722)
.-..||+++...|++|++|+.. ..+. .-.+++++.......+.. ..+.|++|...||+
T Consensus 31 ~G~~lA~~~~~~Ga~V~li~g~--~~~~---~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAAVs 93 (185)
T PF04127_consen 31 MGAALAEEAARRGAEVTLIHGP--SSLP---PPPGVKVIRVESAEEMLEAVKELLPSADIIIMAAAVS 93 (185)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-T--TS-------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB--
T ss_pred HHHHHHHHHHHCCCEEEEEecC--cccc---ccccceEEEecchhhhhhhhccccCcceeEEEecchh
Confidence 4456899999999999999833 2221 135788888666553333 23458887776663
No 240
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=32.66 E-value=2.4e+02 Score=29.34 Aligned_cols=87 Identities=17% Similarity=0.096 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHH--hCCcEEEEcCC-ccchhh---hcCccEEEECCch-hhHhHHH
Q 004942 256 GAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA--RRKIKVLEDRG-EPSFKT---SMKADLVIAGSAV-CATWIDQ 328 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~--~~gI~Vl~~~~-~~~~~~---~~k~DlVia~Sav-~~~wi~~ 328 (722)
|+...-..+|+.|.+.||+|.+|- .......+.. +....++...+ +....+ ..++|.+++-+.. -..-+-.
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id--~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~ 84 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLID--RDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVNSVLA 84 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEE--cCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHH
Confidence 777888899999999999999997 4444444433 35666665444 333333 5689999886543 2222333
Q ss_pred HHHhccCCCccEEEEE
Q 004942 329 YITRFPAGGSQVVWWI 344 (722)
Q Consensus 329 ~i~~~~~g~~~ivw~I 344 (722)
.++....+.+.++--+
T Consensus 85 ~la~~~~gv~~viar~ 100 (225)
T COG0569 85 LLALKEFGVPRVIARA 100 (225)
T ss_pred HHHHHhcCCCcEEEEe
Confidence 4444434566554444
No 241
>PLN00016 RNA-binding protein; Provisional
Probab=32.57 E-value=2.3e+02 Score=31.15 Aligned_cols=74 Identities=20% Similarity=0.243 Sum_probs=40.8
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC--C-------hhHHHhCCcEEEEcCCcc--chhhhcC
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG--L-------MPELARRKIKVLEDRGEP--SFKTSMK 311 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~--l-------~~el~~~gI~Vl~~~~~~--~~~~~~k 311 (722)
++|++++.+. ||+...-..|+++|.+.||+|.+++-..... + ..++...|++++..+... ......+
T Consensus 53 ~~VLVt~~~~--GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~ 130 (378)
T PLN00016 53 KKVLIVNTNS--GGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAG 130 (378)
T ss_pred ceEEEEeccC--CCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCC
Confidence 5666543322 3334445568889999999999998332210 0 113344567776544322 2223357
Q ss_pred ccEEEEC
Q 004942 312 ADLVIAG 318 (722)
Q Consensus 312 ~DlVia~ 318 (722)
+|+||..
T Consensus 131 ~d~Vi~~ 137 (378)
T PLN00016 131 FDVVYDN 137 (378)
T ss_pred ccEEEeC
Confidence 8888643
No 242
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.94 E-value=1.7e+02 Score=29.72 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--ch---hh-----hcCccEEEECCch
Q 004942 261 MMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SF---KT-----SMKADLVIAGSAV 321 (722)
Q Consensus 261 m~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~~---~~-----~~k~DlVia~Sav 321 (722)
=..+|+.|.+.|++|.++. ........++...++.++..+... .+ .. .-++|++|.+..+
T Consensus 20 G~~~a~~l~~~G~~v~~~~-~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 20 GRAIAEAFLREGAKVAVLY-NSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred HHHHHHHHHHCCCEEEEEe-CCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 3557899999999988765 222233345554566666544322 11 11 1368999777544
No 243
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=31.87 E-value=1.1e+02 Score=34.79 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=44.9
Q ss_pred hccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcCccEEEEC
Q 004942 239 FVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAG 318 (722)
Q Consensus 239 ~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~ 318 (722)
+...++|+++ +.||+.++. +|+.|.+.|++|++.=... .....+|...|+.+.. ....... .++|+|+..
T Consensus 4 ~~~~~~v~vi----G~G~sG~s~--~a~~L~~~G~~V~~~D~~~-~~~~~~l~~~gi~~~~-~~~~~~~--~~~d~vv~s 73 (461)
T PRK00421 4 LRRIKRIHFV----GIGGIGMSG--LAEVLLNLGYKVSGSDLKE-SAVTQRLLELGAIIFI-GHDAENI--KDADVVVYS 73 (461)
T ss_pred cCCCCEEEEE----EEchhhHHH--HHHHHHhCCCeEEEECCCC-ChHHHHHHHCCCEEeC-CCCHHHC--CCCCEEEEC
Confidence 3444566554 345544442 7888999999997754221 1234557778998875 2222211 368999888
Q ss_pred Cchh
Q 004942 319 SAVC 322 (722)
Q Consensus 319 Sav~ 322 (722)
.++.
T Consensus 74 pgi~ 77 (461)
T PRK00421 74 SAIP 77 (461)
T ss_pred CCCC
Confidence 7664
No 244
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=31.86 E-value=77 Score=34.92 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=47.8
Q ss_pred hhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCh----hHHHhCCcEEEEcCCcc---chhhh
Q 004942 237 ARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM----PELARRKIKVLEDRGEP---SFKTS 309 (722)
Q Consensus 237 ~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~----~el~~~gI~Vl~~~~~~---~~~~~ 309 (722)
...+++++++++.. +...+.++..|..+|.+|..++........ ..+...+-.++...... .....
T Consensus 274 ~~~l~g~~~~i~~~-------~~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 346 (399)
T cd00316 274 HEYLGGKKVAIFGD-------GDLLLALARFLLELGMEVVAAGTTFGHKADYERREELLGEGTEVVDDGDLEELEELIRE 346 (399)
T ss_pred HHHhcCCEEEEECC-------CcHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHhcCCCCEEEeCCCHHHHHHHHhh
Confidence 34567788875432 335566778888999998888754433221 22444555665544433 34446
Q ss_pred cCccEEEECCc
Q 004942 310 MKADLVIAGSA 320 (722)
Q Consensus 310 ~k~DlVia~Sa 320 (722)
.+||+++.++.
T Consensus 347 ~~pdl~ig~~~ 357 (399)
T cd00316 347 LKPDLIIGGSK 357 (399)
T ss_pred cCCCEEEECCc
Confidence 78999988864
No 245
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=31.83 E-value=17 Score=44.69 Aligned_cols=78 Identities=12% Similarity=-0.011 Sum_probs=68.9
Q ss_pred cccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhcc
Q 004942 504 LLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSV 581 (722)
Q Consensus 504 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~ 581 (722)
..++++.+.++.|.-.++|.+....+.+..+..+++.||++....++.++.....++.++++|.-..++++..+|..+
T Consensus 495 ~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~ 572 (784)
T TIGR02470 495 FDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECY 572 (784)
T ss_pred CcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHH
Confidence 446778889999999999999888888888999999999999999999998888888899999999999999888654
No 246
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=31.05 E-value=1.8e+02 Score=28.78 Aligned_cols=37 Identities=30% Similarity=0.520 Sum_probs=25.6
Q ss_pred HHHHHHHcCEEEEcCCCCCCCcc--HHHHH---HHHhCCCEEEcC
Q 004942 617 VASLYSAADVYVINSQGLGETFG--RVTIE---AMAFGVPVLGTD 656 (722)
Q Consensus 617 v~~lysaADv~V~pS~~l~Egfg--lviLE---AMA~GlPVVaTd 656 (722)
...++..||++|.-- +|-+- ++.+. |.|+|+|.|.-.
T Consensus 66 T~~li~~aDvVVvrF---GekYKQWNaAfDAg~a~AlgKplI~lh 107 (141)
T PF11071_consen 66 TRTLIEKADVVVVRF---GEKYKQWNAAFDAGYAAALGKPLITLH 107 (141)
T ss_pred HHHHHhhCCEEEEEe---chHHHHHHHHhhHHHHHHcCCCeEEec
Confidence 567899999998754 55442 33333 458899998753
No 247
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=30.87 E-value=2.1e+02 Score=32.60 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=45.4
Q ss_pred hccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC-ChhHH----HhCCcEEE-EcCCcc----chhh
Q 004942 239 FVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMPEL----ARRKIKVL-EDRGEP----SFKT 308 (722)
Q Consensus 239 ~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~-l~~el----~~~gI~Vl-~~~~~~----~~~~ 308 (722)
..+.+|++++. .+-.+..|++.|...|.++.++....... +.+.+ ...+..+. ....+. .+.+
T Consensus 297 ~l~gkrv~v~g-------~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~l~ 369 (429)
T cd03466 297 YNFGRKAAIYG-------EPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFFDIESYAK 369 (429)
T ss_pred hcCCCEEEEEc-------CHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHH
Confidence 45678887653 36678889999999999996666433222 22222 32233332 222222 4445
Q ss_pred hcCccEEEECCc
Q 004942 309 SMKADLVIAGSA 320 (722)
Q Consensus 309 ~~k~DlVia~Sa 320 (722)
+.+||++|.++.
T Consensus 370 ~~~~dliiG~s~ 381 (429)
T cd03466 370 ELKIDVLIGNSY 381 (429)
T ss_pred hcCCCEEEECch
Confidence 789999988864
No 248
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.84 E-value=1.7e+02 Score=33.72 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=41.7
Q ss_pred ccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhC--CcEEEEcCCccchhhhcCccEEEECC
Q 004942 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR--KIKVLEDRGEPSFKTSMKADLVIAGS 319 (722)
Q Consensus 242 ~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~--gI~Vl~~~~~~~~~~~~k~DlVia~S 319 (722)
.++|+++ ++||+.++ +|+.|.+.|++|++.=.........+|... |+++..-....... ..+|+|+...
T Consensus 7 ~~~i~v~----G~G~sG~s---~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~--~~~d~vv~sp 77 (498)
T PRK02006 7 GPMVLVL----GLGESGLA---MARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALL--DGVDLVALSP 77 (498)
T ss_pred CCEEEEE----eecHhHHH---HHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHh--cCCCEEEECC
Confidence 3565544 46666644 888999999999775422211223445555 55654422222222 2689999987
Q ss_pred chh
Q 004942 320 AVC 322 (722)
Q Consensus 320 av~ 322 (722)
++.
T Consensus 78 ~I~ 80 (498)
T PRK02006 78 GLS 80 (498)
T ss_pred CCC
Confidence 653
No 249
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=30.02 E-value=1.4e+02 Score=26.70 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=31.8
Q ss_pred hhHHHHHH--HcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcC
Q 004942 615 TRVASLYS--AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD 656 (722)
Q Consensus 615 ~dv~~lys--aADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd 656 (722)
+++.+++. ..|++++.+. .....-.+.+++..|++|++-.
T Consensus 52 ~~~~~ll~~~~~D~V~I~tp--~~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 52 TDLEELLADEDVDAVIIATP--PSSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp SSHHHHHHHTTESEEEEESS--GGGHHHHHHHHHHTTSEEEEES
T ss_pred hHHHHHHHhhcCCEEEEecC--CcchHHHHHHHHHcCCEEEEEc
Confidence 36778888 5688888775 5666678999999999999864
No 250
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=29.90 E-value=2.3e+02 Score=32.46 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=54.3
Q ss_pred ccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcC---CCCChhHHHhCCcEEEEcCCcc--chh----h--
Q 004942 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK---RGGLMPELARRKIKVLEDRGEP--SFK----T-- 308 (722)
Q Consensus 240 ~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~---~g~l~~el~~~gI~Vl~~~~~~--~~~----~-- 308 (722)
+...||....| -+.-+.-|+..|...|++|.+.+... ...-...|...||+|+..++.. .+. .
T Consensus 30 l~G~~i~~~~h------l~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l 103 (406)
T TIGR00936 30 LKGARIAACLH------VTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPVFAWRGETNEEYYWAIEQVL 103 (406)
T ss_pred CCCCEEEEEEe------chHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceEEEecCCCHHHHHHHHHHHh
Confidence 66789999999 77778889999999999998886322 1223345678999999877654 111 1
Q ss_pred hcCccEEEECCch
Q 004942 309 SMKADLVIAGSAV 321 (722)
Q Consensus 309 ~~k~DlVia~Sav 321 (722)
..+||+++=..+-
T Consensus 104 ~~~p~~iiDdGgd 116 (406)
T TIGR00936 104 DHEPNIIIDDGAD 116 (406)
T ss_pred cCCCCEEEecccH
Confidence 5688888665443
No 251
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=29.73 E-value=1.9e+02 Score=32.70 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=47.0
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHH-hCCCEEEEEEEc--CCCCChhHHHhCC-cEEEEc-CCcc---chh
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELL-SCGATVSAVVLS--KRGGLMPELARRK-IKVLED-RGEP---SFK 307 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~-s~G~~VsvV~ls--~~g~l~~el~~~g-I~Vl~~-~~~~---~~~ 307 (722)
+...+..+|+++... .+ .+..|++.|. .+|.+|..++.. ....+...+.+.. ..++.. ..+. ...
T Consensus 282 ~~~~l~Gk~vai~~~------~~-~~~~la~~l~~elG~~v~~i~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~e~~~~~ 354 (415)
T cd01977 282 YKERLKGKKVCIWTG------GP-KLWHWTKVIEDELGMQVVAMSSKFGHQEDFEKVIARGGEGTIYIDDPNELEFFEIL 354 (415)
T ss_pred HHHHcCCCEEEEECC------Cc-hHHHHHHHHHHhcCCEEEEEEEEeccHHHHHHHHHhcCCceEEEeCCCHHHHHHHH
Confidence 444577888886532 22 3677888886 799999887643 2223334444333 334332 2332 334
Q ss_pred hhcCccEEEECCc
Q 004942 308 TSMKADLVIAGSA 320 (722)
Q Consensus 308 ~~~k~DlVia~Sa 320 (722)
.+.+||+++.+|.
T Consensus 355 ~~~~pdliig~s~ 367 (415)
T cd01977 355 EMLKPDIILTGPR 367 (415)
T ss_pred HhcCCCEEEecCc
Confidence 5789999988863
No 252
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=28.94 E-value=1.5e+02 Score=27.85 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=32.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChh
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP 288 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~ 288 (722)
|++-|+...+..|......+||..|.++|..|.+|-+....+...
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~ 45 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLS 45 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcc
Confidence 455566666778999999999999999999988888666555333
No 253
>PRK06483 dihydromonapterin reductase; Provisional
Probab=28.88 E-value=2.8e+02 Score=27.74 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCC
Q 004942 256 GAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRG 302 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~ 302 (722)
|+.-.-..+|+.|.+.|++|.++.-. .......+...++.++..+.
T Consensus 10 as~gIG~~ia~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~D~ 55 (236)
T PRK06483 10 AGQRIGLALAWHLLAQGQPVIVSYRT-HYPAIDGLRQAGAQCIQADF 55 (236)
T ss_pred CCChHHHHHHHHHHHCCCeEEEEeCC-chhHHHHHHHcCCEEEEcCC
Confidence 33444566888999999999887632 22344555556666655443
No 254
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=28.76 E-value=6.4e+02 Score=29.64 Aligned_cols=87 Identities=13% Similarity=0.159 Sum_probs=62.2
Q ss_pred cEEeCCchhhHHHHHHHc--CEEEEcCCCCCCCccHHHHHHHHh---CCCEEE-cCCCChhh---hhccCccEEEECCCC
Q 004942 607 AMLWTPATTRVASLYSAA--DVYVINSQGLGETFGRVTIEAMAF---GVPVLG-TDAGGTKE---IVEHNVTGLLHPPGH 677 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysaA--Dv~V~pS~~l~EgfglviLEAMA~---GlPVVa-Td~GG~~E---IVe~g~tGlLvp~~d 677 (722)
.|.......+....+... |++++-.. +.+.-|+.+++.+.. ++|||. |..|.+.. .+..|...|+..|-+
T Consensus 30 ~v~~a~~~~~al~~i~~~~~~lvl~Di~-mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~ 108 (464)
T COG2204 30 EVVTAESAEEALEALSESPFDLVLLDIR-MPGMDGLELLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFD 108 (464)
T ss_pred eEEEeCCHHHHHHHHhcCCCCEEEEecC-CCCCchHHHHHHHHhhCCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCC
Confidence 455555544555555555 66666555 677788999888765 699977 66677544 445688889999988
Q ss_pred ccHHHHHHHHHHhhcCHHH
Q 004942 678 PGAQVLAQNLRYLLKNPSV 696 (722)
Q Consensus 678 ~~~e~LA~aI~~LL~np~~ 696 (722)
+ +.|...+.+.++....
T Consensus 109 ~--~~L~~~v~ral~~~~~ 125 (464)
T COG2204 109 L--DRLLAIVERALELREL 125 (464)
T ss_pred H--HHHHHHHHHHHHHhhh
Confidence 8 9999999999886544
No 255
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=28.50 E-value=2.5e+02 Score=30.26 Aligned_cols=24 Identities=25% Similarity=0.079 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEE
Q 004942 256 GAPLSMMELATELLSCGATVSAVV 279 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ 279 (722)
|+...-..||+.|.+.|++|.++.
T Consensus 12 atG~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 12 HTGFKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEe
Confidence 334445678999999999998776
No 256
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=28.31 E-value=5.9e+02 Score=25.17 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=49.1
Q ss_pred hhHHHHHH--HcCEEEEcCCCCCC---CccHHHHHHHH---hCCCEEE-cCCCCh---hhhhccCccEEEECCCCccHHH
Q 004942 615 TRVASLYS--AADVYVINSQGLGE---TFGRVTIEAMA---FGVPVLG-TDAGGT---KEIVEHNVTGLLHPPGHPGAQV 682 (722)
Q Consensus 615 ~dv~~lys--aADv~V~pS~~l~E---gfglviLEAMA---~GlPVVa-Td~GG~---~EIVe~g~tGlLvp~~d~~~e~ 682 (722)
.+....+. ..|++++... +.. .-|.-+++.+. ..+|||. |+.... .+.++.|..|++..+.++ +.
T Consensus 39 ~~~~~~~~~~~~DlvllD~~-l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~--~~ 115 (216)
T PRK10840 39 TALINNLPKLDAHVLITDLS-MPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAP--TD 115 (216)
T ss_pred HHHHHHHHhCCCCEEEEeCc-CCCCCCCCHHHHHHHHHHHCCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCH--HH
Confidence 34444443 3699888754 232 25667777664 3467765 433332 345678899999998887 99
Q ss_pred HHHHHHHhhc
Q 004942 683 LAQNLRYLLK 692 (722)
Q Consensus 683 LA~aI~~LL~ 692 (722)
|.++|..++.
T Consensus 116 l~~ai~~v~~ 125 (216)
T PRK10840 116 LPKALAALQK 125 (216)
T ss_pred HHHHHHHHHC
Confidence 9999998876
No 257
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=27.90 E-value=80 Score=36.87 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=27.7
Q ss_pred cEEEEEeCCCCCCcHHHH-HHHHHHHHHhCCCEEEEEEEc
Q 004942 243 RKFILIFHELSMTGAPLS-MMELATELLSCGATVSAVVLS 281 (722)
Q Consensus 243 kkillI~hels~gGapls-m~eLA~eL~s~G~~VsvV~ls 281 (722)
-||+.+++. .+++... +..++++|.+.||+|+++++.
T Consensus 21 ~kIl~~~P~--~~~SH~~~~~~l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 21 ARILAVFPT--PAYSHHSVFKVYVEALAERGHNVTVIKPT 58 (507)
T ss_pred ccEEEEcCC--CCCcHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 346656553 4566654 778999999999999999853
No 258
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=27.64 E-value=2.1e+02 Score=32.25 Aligned_cols=79 Identities=19% Similarity=0.176 Sum_probs=45.4
Q ss_pred hhhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC-ChhHH---HhCCcEEEEcCCcc---chh
Q 004942 235 DFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMPEL---ARRKIKVLEDRGEP---SFK 307 (722)
Q Consensus 235 ~f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~-l~~el---~~~gI~Vl~~~~~~---~~~ 307 (722)
++.+.+..+++++... .. ....+++.|..+|.+|..+....... ...++ ...+..++...... ...
T Consensus 280 ~~~~~l~gkrv~i~~~------~~-~~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~e~~~~i 352 (410)
T cd01968 280 PYRARLEGKKAALYTG------GV-KSWSLVSALQDLGMEVVATGTQKGTKEDYERIKELLGEGTVIVDDANPRELKKLL 352 (410)
T ss_pred HHHHHhCCCEEEEEcC------Cc-hHHHHHHHHHHCCCEEEEEecccCCHHHHHHHHHHhCCCcEEEeCCCHHHHHHHH
Confidence 4555677888876532 22 24668888889999998886332211 11112 12233444332222 444
Q ss_pred hhcCccEEEECCc
Q 004942 308 TSMKADLVIAGSA 320 (722)
Q Consensus 308 ~~~k~DlVia~Sa 320 (722)
...+||+++.++.
T Consensus 353 ~~~~pDl~ig~s~ 365 (410)
T cd01968 353 KEKKADLLVAGGK 365 (410)
T ss_pred hhcCCCEEEECCc
Confidence 5779999988854
No 259
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=27.59 E-value=3.6e+02 Score=30.37 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=51.3
Q ss_pred CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcC--ccEEEECCchhhHhHHHHH
Q 004942 253 SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMK--ADLVIAGSAVCATWIDQYI 330 (722)
Q Consensus 253 s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k--~DlVia~Sav~~~wi~~~i 330 (722)
..||...+..++|+++ |++|++++ ....-.+..++.|...+....+.......+ +|++|.... ..-+.+++
T Consensus 174 G~GGlGh~avQ~Aka~---ga~Via~~--~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~--~~~~~~~l 246 (339)
T COG1064 174 GAGGLGHMAVQYAKAM---GAEVIAIT--RSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG--PATLEPSL 246 (339)
T ss_pred CCcHHHHHHHHHHHHc---CCeEEEEe--CChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC--hhhHHHHH
Confidence 4668888888888775 89999998 333444455677777665543443444332 999987765 44455666
Q ss_pred HhccCCCc
Q 004942 331 TRFPAGGS 338 (722)
Q Consensus 331 ~~~~~g~~ 338 (722)
.....++.
T Consensus 247 ~~l~~~G~ 254 (339)
T COG1064 247 KALRRGGT 254 (339)
T ss_pred HHHhcCCE
Confidence 55555554
No 260
>PRK06179 short chain dehydrogenase; Provisional
Probab=27.07 E-value=1.9e+02 Score=29.55 Aligned_cols=72 Identities=15% Similarity=0.099 Sum_probs=38.9
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--chhh--------hc
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT--------SM 310 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~~~~--------~~ 310 (722)
+..+.++|+- |+.-.-..+|++|.+.|++|.+++-.. .... ...++.++..+... .+.. .-
T Consensus 2 ~~~~~vlVtG-----asg~iG~~~a~~l~~~g~~V~~~~r~~-~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 2 SNSKVALVTG-----ASSGIGRATAEKLARAGYRVFGTSRNP-ARAA---PIPGVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred CCCCEEEEec-----CCCHHHHHHHHHHHHCCCEEEEEeCCh-hhcc---ccCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 3445566644 222334567889999999998877221 1111 12355555543322 2221 23
Q ss_pred CccEEEECCch
Q 004942 311 KADLVIAGSAV 321 (722)
Q Consensus 311 k~DlVia~Sav 321 (722)
++|++|.+..+
T Consensus 73 ~~d~li~~ag~ 83 (270)
T PRK06179 73 RIDVLVNNAGV 83 (270)
T ss_pred CCCEEEECCCC
Confidence 68998777544
No 261
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=26.93 E-value=80 Score=39.72 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=48.6
Q ss_pred chhhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCh-----hHHHhCCcEEEEcCCcc---c
Q 004942 234 GDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM-----PELARRKIKVLEDRGEP---S 305 (722)
Q Consensus 234 ~~f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~-----~el~~~gI~Vl~~~~~~---~ 305 (722)
.++.+....||+++... +.....++..|..+|.+|..+. ....... .++...+..++...... .
T Consensus 312 ~~~~~~L~GKrv~i~~g-------~~~~~~la~~l~elGmevv~~g-~~~~~~~d~~~~~~~~~~~~~vi~~~d~~el~~ 383 (917)
T PRK14477 312 APYRARLEGKRVVLFTG-------GVKTWSMVNALRELGVEVLAAG-TQNSTLEDFARMKALMHKDAHIIEDTSTAGLLR 383 (917)
T ss_pred HHHHHHccCCEEEEECC-------CchHHHHHHHHHHCCCEEEEEc-CCCCCHHHHHHHHHhcCCCCEEEECCCHHHHHH
Confidence 34566778899987642 2346668888899999997754 2222221 12223345565543332 4
Q ss_pred hhhhcCccEEEECCc
Q 004942 306 FKTSMKADLVIAGSA 320 (722)
Q Consensus 306 ~~~~~k~DlVia~Sa 320 (722)
..+..+||++++++.
T Consensus 384 ~i~~~~pDLlig~~~ 398 (917)
T PRK14477 384 VMREKMPDLIVAGGK 398 (917)
T ss_pred HHHhcCCCEEEecCc
Confidence 445789999999874
No 262
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=26.75 E-value=1.2e+02 Score=30.39 Aligned_cols=24 Identities=29% Similarity=0.165 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEE
Q 004942 256 GAPLSMMELATELLSCGATVSAVV 279 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ 279 (722)
|..-.-..+|+.|.+.|++|.++.
T Consensus 12 ~sg~iG~~la~~l~~~g~~v~~~~ 35 (258)
T PRK12429 12 AASGIGLEIALALAKEGAKVVIAD 35 (258)
T ss_pred CCchHHHHHHHHHHHCCCeEEEEe
Confidence 333445678999999999998876
No 263
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=26.49 E-value=74 Score=37.05 Aligned_cols=67 Identities=25% Similarity=0.341 Sum_probs=47.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcCccEEEECCchh
Q 004942 250 HELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (722)
Q Consensus 250 hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~Sav~ 322 (722)
|-+.+||+..+- ||.-|.+.||+|+=.=.... ...+.|+..|++++.-... .....+|.|+.++|+-
T Consensus 11 HfIGIgG~GMsg--lA~iL~~~G~~VsGSD~~~~-~~t~~L~~~G~~i~~gh~~---~ni~~~~~VV~s~Ai~ 77 (459)
T COG0773 11 HFIGIGGIGMSG--LAEILLNLGYKVSGSDLAES-PMTQRLEALGIEIFIGHDA---ENILDADVVVVSNAIK 77 (459)
T ss_pred EEEeeccccHHH--HHHHHHhCCCceECcccccc-HHHHHHHHCCCeEeCCCCH---HHcCCCceEEEecccC
Confidence 667888887665 99999999999976653333 3667889999999853221 2345667787877764
No 264
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=26.37 E-value=1.9e+02 Score=32.10 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=27.0
Q ss_pred EEEeCCCCCCcHHH--HHHHHHHHHHhCCCEEEEEE
Q 004942 246 ILIFHELSMTGAPL--SMMELATELLSCGATVSAVV 279 (722)
Q Consensus 246 llI~hels~gGapl--sm~eLA~eL~s~G~~VsvV~ 279 (722)
++..-+++.||+.. .+..||+.|.++|+.|.|++
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ils 86 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVS 86 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEEC
Confidence 44557787776655 47789999999999999997
No 265
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=26.20 E-value=73 Score=32.01 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=29.7
Q ss_pred HHHHHHH-cCEEEEcCCCCCC----CccHHHHHHHHhCCCEEEcCCC
Q 004942 617 VASLYSA-ADVYVINSQGLGE----TFGRVTIEAMAFGVPVLGTDAG 658 (722)
Q Consensus 617 v~~lysa-ADv~V~pS~~l~E----gfglviLEAMA~GlPVVaTd~G 658 (722)
+..-+.. +|++|++-.+-.| ||--.+.+|++.|+|||++-..
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 4444555 8999998643333 4445789999999999997443
No 266
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=25.76 E-value=3.2e+02 Score=28.91 Aligned_cols=44 Identities=20% Similarity=0.152 Sum_probs=33.2
Q ss_pred hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCCh
Q 004942 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT 660 (722)
Q Consensus 615 ~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~ 660 (722)
+++.+++..+|+++..+. .+...-.+..|+..|+|||....|-.
T Consensus 52 ~dl~~ll~~~DvVid~t~--p~~~~~~~~~al~~G~~vvigttG~s 95 (257)
T PRK00048 52 DDLEAVLADADVLIDFTT--PEATLENLEFALEHGKPLVIGTTGFT 95 (257)
T ss_pred CCHHHhccCCCEEEECCC--HHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 567777778999996664 56666678889999999998654433
No 267
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=25.73 E-value=8.1e+02 Score=25.88 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=30.2
Q ss_pred chhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcC
Q 004942 613 ATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD 656 (722)
Q Consensus 613 ~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd 656 (722)
...++.++++.||++|-..-| .++=|+++|+|+++-.
T Consensus 240 ~~~e~~~~i~~~~~vI~~RlH-------~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 240 DPEELLGLFASARLVIGMRLH-------ALILAAAAGVPFVALS 276 (298)
T ss_pred CHHHHHHHHhhCCEEEEechH-------HHHHHHHcCCCEEEee
Confidence 346788999999988877653 6889999999999763
No 268
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=25.68 E-value=1.1e+02 Score=31.78 Aligned_cols=69 Identities=28% Similarity=0.273 Sum_probs=38.7
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcCccEEEEC
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAG 318 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~ 318 (722)
..+++++| ||+.. ...=|+-|+++|++|+|+++.-...+.......+|..+........... +++|++.
T Consensus 11 ~~k~Vlvv------GgG~v-a~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~--~~lviaA 79 (210)
T COG1648 11 EGKKVLVV------GGGSV-ALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDD--AFLVIAA 79 (210)
T ss_pred CCCEEEEE------CCCHH-HHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcC--ceEEEEe
Confidence 34667665 44444 3446788999999999999554223333334555555552222222222 6666544
No 269
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=25.47 E-value=4.3e+02 Score=27.61 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=45.9
Q ss_pred HcCEEEEcCCCCCCCccHHHHHHHH-----hCCCEEE-cC---CCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcC
Q 004942 623 AADVYVINSQGLGETFGRVTIEAMA-----FGVPVLG-TD---AGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKN 693 (722)
Q Consensus 623 aADv~V~pS~~l~EgfglviLEAMA-----~GlPVVa-Td---~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~n 693 (722)
+-|++++... ...-. ++|++- .+.|+|. ++ -+-+...++.|..|+++.|-++ ..+--.+.-....
T Consensus 50 ~pDvVildie--~p~rd--~~e~~~~~~~~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~--~rl~p~L~vA~sr 123 (194)
T COG3707 50 QPDVVILDIE--MPRRD--IIEALLLASENVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDE--SRLLPILDVAVSR 123 (194)
T ss_pred CCCEEEEecC--CCCcc--HHHHHHHhhcCCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcch--hhhhHHHHHHHHH
Confidence 3499888775 33333 677762 3566766 33 3445667888999999998876 5555555444444
Q ss_pred HHHHHHHHHH
Q 004942 694 PSVRERMAME 703 (722)
Q Consensus 694 p~~r~~mg~~ 703 (722)
-..+.++...
T Consensus 124 f~~~~~L~~e 133 (194)
T COG3707 124 FEERRALRRE 133 (194)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 270
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=25.46 E-value=1e+02 Score=30.49 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=31.7
Q ss_pred chhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcC
Q 004942 613 ATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD 656 (722)
Q Consensus 613 ~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd 656 (722)
...++..+|+.||++|...-| ..+=|+++|+|+|+-+
T Consensus 247 ~~~~~~~~~~~~~~~Is~RlH-------~~I~a~~~g~P~i~i~ 283 (286)
T PF04230_consen 247 SPDELLELISQADLVISMRLH-------GAILALSLGVPVIAIS 283 (286)
T ss_pred CHHHHHHHHhcCCEEEecCCH-------HHHHHHHcCCCEEEEe
Confidence 347899999999999988864 6888999999999854
No 271
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=25.38 E-value=1.6e+02 Score=32.04 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=24.0
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCC
Q 004942 246 ILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG 284 (722)
Q Consensus 246 llI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g 284 (722)
+||+++-++.-..+. .|+++|.+.| +|.||++....
T Consensus 3 ILlTNDDGi~apGi~--aL~~al~~~g-~V~VvAP~~eq 38 (266)
T PRK13934 3 ILVTNDDGVHSPGLR--LLYEFVSPLG-EVDVVAPETPK 38 (266)
T ss_pred EEEEcCCCCCCHHHH--HHHHHHHhCC-cEEEEccCCCC
Confidence 456666666544444 4778887777 89999876543
No 272
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=25.35 E-value=3.1e+02 Score=26.46 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=43.9
Q ss_pred Cchhhhhc-cccEEEEEeCCCCC--C--cHHHHHHHHHHHHHhCCCEEEEEEEcC--CCCChhHHHhCCc
Q 004942 233 KGDFARFV-WSRKFILIFHELSM--T--GAPLSMMELATELLSCGATVSAVVLSK--RGGLMPELARRKI 295 (722)
Q Consensus 233 ~~~f~~~~-~~kkillI~hels~--g--Gaplsm~eLA~eL~s~G~~VsvV~ls~--~g~l~~el~~~gI 295 (722)
-++++.|. ..|.|++.|+.-.. | -.-..+.+|+..|.+.|++|.+++... ..|+...+...|-
T Consensus 58 ~p~L~~~~~~gr~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~KGiDD~l~~~G~ 127 (130)
T PF12965_consen 58 IPELAKLAKPGREVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGKGIDDLLAAKGP 127 (130)
T ss_pred chhHHHhccCCceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCCHhHHHHhcCc
Confidence 35677665 46788888887632 2 334558999999999999999999763 2345555555553
No 273
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=25.28 E-value=2.9e+02 Score=31.16 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=53.4
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCC--C---CChhHHHhCCcEEEEcC--Ccc--------chhh
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR--G---GLMPELARRKIKVLEDR--GEP--------SFKT 308 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~--g---~l~~el~~~gI~Vl~~~--~~~--------~~~~ 308 (722)
-+++++-.-...|=.-++-.||..|.+.|+.|.+.....- + .+...-.+.|++++.-. .++ ....
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Ak 218 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAK 218 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHH
Confidence 4455555556667788899999999999999999983221 1 23334468999999843 233 2333
Q ss_pred hcCccEEEECCc
Q 004942 309 SMKADLVIAGSA 320 (722)
Q Consensus 309 ~~k~DlVia~Sa 320 (722)
+.++|+|++-+|
T Consensus 219 ar~~DvvliDTA 230 (340)
T COG0552 219 ARGIDVVLIDTA 230 (340)
T ss_pred HcCCCEEEEeCc
Confidence 889999988764
No 274
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.26 E-value=1.1e+02 Score=33.18 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=41.8
Q ss_pred hccccEEEEEeCCCCCCcHHHHHHHHHHHHHh--CCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCc---c--------c
Q 004942 239 FVWSRKFILIFHELSMTGAPLSMMELATELLS--CGATVSAVVLSKRGGLMPELARRKIKVLEDRGE---P--------S 305 (722)
Q Consensus 239 ~~~~kkillI~hels~gGaplsm~eLA~eL~s--~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~---~--------~ 305 (722)
...++|++++.. .+|..+- .|..+..+ .+++|.+|...+ .......++.||+++..+.. . .
T Consensus 86 ~~~~~ri~vl~S---g~gsnl~--al~~~~~~~~~~~~i~~visn~-~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~ 159 (286)
T PRK06027 86 SAERKRVVILVS---KEDHCLG--DLLWRWRSGELPVEIAAVISNH-DDLRSLVERFGIPFHHVPVTKETKAEAEARLLE 159 (286)
T ss_pred cccCcEEEEEEc---CCCCCHH--HHHHHHHcCCCCcEEEEEEEcC-hhHHHHHHHhCCCEEEeccCccccchhHHHHHH
Confidence 334456555432 2244443 34444433 478888887554 34555567889999874322 1 2
Q ss_pred hhhhcCccEEE
Q 004942 306 FKTSMKADLVI 316 (722)
Q Consensus 306 ~~~~~k~DlVi 316 (722)
..++.+||+|+
T Consensus 160 ~l~~~~~Dliv 170 (286)
T PRK06027 160 LIDEYQPDLVV 170 (286)
T ss_pred HHHHhCCCEEE
Confidence 34478999993
No 275
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=25.02 E-value=3.3e+02 Score=29.14 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhC-CcEEEEcCCcc----chhhhcCccEEEECCchhhHhHHHH
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR-KIKVLEDRGEP----SFKTSMKADLVIAGSAVCATWIDQY 329 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~-gI~Vl~~~~~~----~~~~~~k~DlVia~Sav~~~wi~~~ 329 (722)
||..- --.||..|.+.||+|.+.+-+..+. +.+... +.+++....+. .+..+.++|+||--+...+.-+.+.
T Consensus 7 GGT~e-gr~la~~L~~~g~~v~~s~~t~~~~--~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~ 83 (256)
T TIGR00715 7 GGTVD-SRAIAKGLIAQGIEILVTVTTSEGK--HLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAAQITTN 83 (256)
T ss_pred echHH-HHHHHHHHHhCCCeEEEEEccCCcc--ccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHH
Confidence 44443 7789999999999999988554432 122233 46777655444 5566889999977766655555543
Q ss_pred H
Q 004942 330 I 330 (722)
Q Consensus 330 i 330 (722)
+
T Consensus 84 a 84 (256)
T TIGR00715 84 A 84 (256)
T ss_pred H
Confidence 3
No 276
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=24.85 E-value=1.3e+02 Score=35.28 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchh----hhcCccEEEECCch
Q 004942 258 PLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFK----TSMKADLVIAGSAV 321 (722)
Q Consensus 258 plsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~----~~~k~DlVia~Sav 321 (722)
..+-+.||+++..+|++|++|+ .+..+. .-.|++++.......+. ...++|++|...||
T Consensus 282 GkmG~alA~aa~~~GA~VtlI~--Gp~~~~---~p~~v~~i~V~ta~eM~~av~~~~~~Di~I~aAAV 344 (475)
T PRK13982 282 GKQGFAIAAAAAAAGAEVTLIS--GPVDLA---DPQGVKVIHVESARQMLAAVEAALPADIAIFAAAV 344 (475)
T ss_pred hHHHHHHHHHHHHCCCcEEEEe--CCcCCC---CCCCceEEEecCHHHHHHHHHhhCCCCEEEEeccc
Confidence 4556779999999999999998 222221 23577877766544333 34567988777665
No 277
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=24.82 E-value=2.3e+02 Score=33.02 Aligned_cols=77 Identities=18% Similarity=0.119 Sum_probs=55.5
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC-----ChhHHHhCCcEEEEcCCcc----------chhhh
Q 004942 245 FILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-----LMPELARRKIKVLEDRGEP----------SFKTS 309 (722)
Q Consensus 245 illI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~-----l~~el~~~gI~Vl~~~~~~----------~~~~~ 309 (722)
.+++.-.|...|=.-+.-.||..|.+.|+.|-+|+..-..+ |.....+.+++++...... ...+.
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~ 180 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKE 180 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHH
Confidence 34444568888999999999999999999999999654322 3333458899999874332 12225
Q ss_pred cCccEEEECCch
Q 004942 310 MKADLVIAGSAV 321 (722)
Q Consensus 310 ~k~DlVia~Sav 321 (722)
...|+||+-+|-
T Consensus 181 ~~~DvvIvDTAG 192 (451)
T COG0541 181 EGYDVVIVDTAG 192 (451)
T ss_pred cCCCEEEEeCCC
Confidence 678999998754
No 278
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=24.71 E-value=94 Score=37.28 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=50.5
Q ss_pred ccccCCccc-ceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch---hhHH-------
Q 004942 550 AVSFGSGHL-RRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT---TRVA------- 618 (722)
Q Consensus 550 ~~~~g~~~~-~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~---~dv~------- 618 (722)
+++||..++ |+-++.+|.-. .+.-.+++.|.++ ++.+.|...|-. -|+.
T Consensus 226 E~G~g~idksKP~il~iGHnv-------------------~~~~~i~dyleE~-~l~d~vE~~GlccTA~D~tRy~~~aK 285 (772)
T COG1152 226 EIGMGTIDKSKPTILVIGHNV-------------------APGTYIMDYLEEN-GLEDEVELAGLCCTAIDMTRYDEAAK 285 (772)
T ss_pred eecCCccCCCCceEEEecccc-------------------ccchHHHHHHHhc-cchhhhheeeeeeeccccchhhhhhh
Confidence 578888877 88888888652 2233445555555 676777666621 1222
Q ss_pred ---------HHHHH--cCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC
Q 004942 619 ---------SLYSA--ADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA 657 (722)
Q Consensus 619 ---------~lysa--ADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~ 657 (722)
.+++. +|+.|.--|... .=++-||+-.|.|||+|+.
T Consensus 286 vvGpls~ql~~IrsG~aDViVvDEqCir---~Dileea~k~g~~vIat~~ 332 (772)
T COG1152 286 VVGPLSKQLKVIRSGKADVIVVDEQCIR---EDILEEASKLGIPVIATNE 332 (772)
T ss_pred hhchhhhhhhhhhcCCceEEEecccccc---hhHHHHHhccCCceEechh
Confidence 23332 477775443211 2257788888999998853
No 279
>PRK06849 hypothetical protein; Provisional
Probab=24.55 E-value=2.6e+02 Score=31.01 Aligned_cols=59 Identities=22% Similarity=0.128 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCc----c-------chhhhcCccEEEECCc
Q 004942 260 SMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE----P-------SFKTSMKADLVIAGSA 320 (722)
Q Consensus 260 sm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~----~-------~~~~~~k~DlVia~Sa 320 (722)
..+.+|+.|.+.|++|.++.... ..+. ...+.--..+..+.. . .+.++.++|+||..+-
T Consensus 16 ~~l~iar~l~~~G~~Vi~~d~~~-~~~~-~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vIP~~e 85 (389)
T PRK06849 16 AALELARLFHNAGHTVILADSLK-YPLS-RFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLIPTCE 85 (389)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCc-hHHH-HHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEEECCh
Confidence 57889999999999999987332 2222 111111122222211 1 4445788999988753
No 280
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=24.51 E-value=3e+02 Score=28.86 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=25.3
Q ss_pred hccccEEEEEeCCC---CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCC
Q 004942 239 FVWSRKFILIFHEL---SMTGAPLSMMELATELLSCGATVSAVVLSKR 283 (722)
Q Consensus 239 ~~~~kkillI~hel---s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~ 283 (722)
.+...++++|+.-- ++|.++. ...+.++|++|.++|++..
T Consensus 7 ~~~~~~vL~v~aHPDDe~~g~ggt-----la~~~~~G~~V~v~~lT~G 49 (237)
T COG2120 7 MLDPLRVLVVFAHPDDEEIGCGGT-----LAKLAARGVEVTVVCLTLG 49 (237)
T ss_pred cccCCcEEEEecCCcchhhccHHH-----HHHHHHCCCeEEEEEccCC
Confidence 45567777776533 3443332 2245789999999998753
No 281
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=24.50 E-value=1.6e+02 Score=25.77 Aligned_cols=54 Identities=24% Similarity=0.206 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEE--EcCC-c-----cchhhhcCccEEEECC
Q 004942 261 MMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL--EDRG-E-----PSFKTSMKADLVIAGS 319 (722)
Q Consensus 261 m~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl--~~~~-~-----~~~~~~~k~DlVia~S 319 (722)
+.++|+.|.+.|+++.+-. +-...|++.|+++- ..+. . .......++|+||...
T Consensus 2 ~~~~~~~l~~lG~~i~AT~-----gTa~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~ 63 (90)
T smart00851 2 LVELAKRLAELGFELVATG-----GTAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTL 63 (90)
T ss_pred HHHHHHHHHHCCCEEEEcc-----HHHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECC
Confidence 4689999999999985432 33466778899863 2111 1 1344577889997763
No 282
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=24.40 E-value=1.8e+02 Score=35.78 Aligned_cols=64 Identities=23% Similarity=0.306 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcCccEEEECCchh
Q 004942 253 SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (722)
Q Consensus 253 s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~Sav~ 322 (722)
+.||+.++. ||+.|.+.|++|++.=.. ......+|...||++..-. ..... ..+|+|+...++.
T Consensus 11 G~G~sG~sa--lA~~L~~~G~~V~~sD~~-~~~~~~~L~~~gi~~~~g~-~~~~~--~~~d~vV~SpgI~ 74 (809)
T PRK14573 11 GIGGIGMSA--LAHILLDRGYSVSGSDLS-EGKTVEKLKAKGARFFLGH-QEEHV--PEDAVVVYSSSIS 74 (809)
T ss_pred EecHHhHHH--HHHHHHHCCCeEEEECCC-CChHHHHHHHCCCEEeCCC-CHHHc--CCCCEEEECCCcC
Confidence 567776665 788899999999875422 2223456778899986532 22211 3689998887664
No 283
>PLN00203 glutamyl-tRNA reductase
Probab=24.38 E-value=7.8e+02 Score=29.23 Aligned_cols=140 Identities=19% Similarity=0.163 Sum_probs=70.1
Q ss_pred ceeEEEcCCchhHHHHHHhhhccCCCCCCchh--HHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCC
Q 004942 559 RRKVLSKSDGKQQQALKILIGSVGSKSNKVPY--VKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGE 636 (722)
Q Consensus 559 ~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y--~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~E 636 (722)
..+++++|-|.+-..+-..+...|... -..| ..+-.+.+.+.++ ...+.+... +++...+..+|+++.+... .+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~-V~V~nRs~era~~La~~~~-g~~i~~~~~-~dl~~al~~aDVVIsAT~s-~~ 341 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTK-MVVVNRSEERVAALREEFP-DVEIIYKPL-DEMLACAAEADVVFTSTSS-ET 341 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHhC-CCceEeecH-hhHHHHHhcCCEEEEccCC-CC
Confidence 467999999987655444443344210 0001 0122233333322 112333222 4677889999998876521 22
Q ss_pred C-ccHHHHHHHHh-----CCCEEEcCCCChhhhh---ccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 004942 637 T-FGRVTIEAMAF-----GVPVLGTDAGGTKEIV---EHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKK 707 (722)
Q Consensus 637 g-fglviLEAMA~-----GlPVVaTd~GG~~EIV---e~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ 707 (722)
+ +.--.++.|.. |.|.+.-|.+-+++|= .+-.+-.+++.+|. +.+++. |.+.|++-...+...
T Consensus 342 pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~~l~~v~lydiDdL--~~i~~~------n~~~R~~~~~~Ae~I 413 (519)
T PLN00203 342 PLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVSELESARVYNVDDL--KEVVAA------NKEDRLRKAMEAQTI 413 (519)
T ss_pred CeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccccCCCCeEEEeccH--HHHHHH------hHHHHHHHHHHHHHH
Confidence 2 22234454432 4788888887666542 22112246666665 443331 444455555555555
Q ss_pred HHh
Q 004942 708 SNG 710 (722)
Q Consensus 708 ve~ 710 (722)
+++
T Consensus 414 I~e 416 (519)
T PLN00203 414 IRE 416 (519)
T ss_pred HHH
Confidence 543
No 284
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=24.31 E-value=1.5e+02 Score=35.44 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=55.4
Q ss_pred CCCCcEEeCCc--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCCh---------------hhh--
Q 004942 603 NLSKAMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT---------------KEI-- 663 (722)
Q Consensus 603 ~L~~~V~f~G~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~---------------~EI-- 663 (722)
.++.-|.-+|. .++...++..+-+||=-..- .| |=+-+||+|.|+|.|-...-.. +++
T Consensus 319 ~~P~~V~NHG~l~~~ef~~lL~~akvfiGlGfP-~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~S 395 (559)
T PF15024_consen 319 NVPSFVKNHGILSGDEFQQLLRKAKVFIGLGFP-YE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTS 395 (559)
T ss_pred ccchhhhhcCcCCHHHHHHHHHhhhEeeecCCC-CC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceecc
Confidence 34444555563 36899999999999943221 22 2367999999999887643211 121
Q ss_pred --------hccCccEEEECCCCccHHHHHHHHHHhhcCH
Q 004942 664 --------VEHNVTGLLHPPGHPGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 664 --------Ve~g~tGlLvp~~d~~~e~LA~aI~~LL~np 694 (722)
|. ...=+.++..|. +++-+||+.+++++
T Consensus 396 QhPY~e~~iG-~PhVytVd~~n~--~~v~~Avk~il~~~ 431 (559)
T PF15024_consen 396 QHPYAEEFIG-EPHVYTVDINNS--TEVEAAVKAILATP 431 (559)
T ss_pred CChHHHhhCC-CCeEEEEcCCCH--HHHHHHHHHHHhcC
Confidence 21 123355666776 89999999999865
No 285
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=24.00 E-value=2.3e+02 Score=32.74 Aligned_cols=78 Identities=18% Similarity=0.196 Sum_probs=45.5
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHH-hCCCEEEEEEEcCC--CCChhHHHhCC-cEEE-EcCCcc---chh
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELL-SCGATVSAVVLSKR--GGLMPELARRK-IKVL-EDRGEP---SFK 307 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~-s~G~~VsvV~ls~~--g~l~~el~~~g-I~Vl-~~~~~~---~~~ 307 (722)
+...+..||+++... + -.+..+++.|. ++|.+|.+++.... ..+...+...+ ..++ .+.... ...
T Consensus 319 ~~~~L~GkrvaI~~~------~-~~~~~l~~~l~~ElGmevv~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~e~~~~i 391 (457)
T TIGR01284 319 YKERLRGKKVWVWSG------G-PKLWHWPRPLEDELGMEVVAVSTKFGHEDDYEKIIARVREGTVIIDDPNELELEEII 391 (457)
T ss_pred HHHHcCCCEEEEECC------C-cHHHHHHHHHHHhCCCEEEEEEEEeCCHHHHHHHHHhcCCCeEEEeCCCHHHHHHHH
Confidence 445677889876432 3 24567888887 69999998764322 11222222222 2233 333322 344
Q ss_pred hhcCccEEEECCc
Q 004942 308 TSMKADLVIAGSA 320 (722)
Q Consensus 308 ~~~k~DlVia~Sa 320 (722)
.+.+||+++.++.
T Consensus 392 ~~~~pDllig~~~ 404 (457)
T TIGR01284 392 EKYKPDIILTGIR 404 (457)
T ss_pred HhcCCCEEEecCC
Confidence 6889999988863
No 286
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=23.96 E-value=1.4e+02 Score=33.55 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=29.5
Q ss_pred EEEeCCCCCCcHHH--HHHHHHHHHHhCCCEEEEEEEcC
Q 004942 246 ILIFHELSMTGAPL--SMMELATELLSCGATVSAVVLSK 282 (722)
Q Consensus 246 llI~hels~gGapl--sm~eLA~eL~s~G~~VsvV~ls~ 282 (722)
+++.-+++.||+.. .++.||++|.+.|..+-+++=.+
T Consensus 49 VI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGY 87 (336)
T COG1663 49 VICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGY 87 (336)
T ss_pred EEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCc
Confidence 44557798888755 48899999999999999998333
No 287
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=23.84 E-value=2.7e+02 Score=27.75 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=37.2
Q ss_pred ccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEE--EcCCCCChhHHHhCCcEEEEc
Q 004942 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV--LSKRGGLMPELARRKIKVLED 300 (722)
Q Consensus 240 ~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~--ls~~g~l~~el~~~gI~Vl~~ 300 (722)
+..+++++|=+-.+.||+ +.+.++.|.++|++|.-+. ..+..+..+.++..|++++.+
T Consensus 102 ~~g~~VlIVDDvi~TG~T---~~~~~~~l~~~Ga~v~~~~~~vdr~~g~~~~l~~~gv~~~sl 161 (170)
T PRK13811 102 VKGKRVLLVEDVTTSGGS---ALYGIEQLRAAGAVVDDVVTVVDREQGAEELLAELGITLTPL 161 (170)
T ss_pred cCCCEEEEEEecccccHH---HHHHHHHHHHCCCeEEEEEEEEECCccHHHHHHhcCCcEEEE
Confidence 356888887665566665 3445566667898886553 233334455567889998864
No 288
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=23.80 E-value=2.2e+02 Score=31.59 Aligned_cols=78 Identities=21% Similarity=0.169 Sum_probs=48.2
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCh-----hHHHhCCcEEEEcCCcc---chh
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM-----PELARRKIKVLEDRGEP---SFK 307 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~-----~el~~~gI~Vl~~~~~~---~~~ 307 (722)
+......+|+++.. .+.....|++.|...|.+|..+......... ..+......|+...... ...
T Consensus 265 ~~~~l~g~~v~i~~-------~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~~~~~v~~~~~~~~~~~~l 337 (398)
T PF00148_consen 265 YRERLGGKRVAIYG-------DPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEESDPEVIIDPDPEEIEELL 337 (398)
T ss_dssp HHHHHTT-EEEEES-------SHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHTTCSEEEESCBHHHHHHHH
T ss_pred hHHhhcCceEEEEc-------CchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhCCCcEEEeCCCHHHHHHHH
Confidence 33455678888653 3477888999999999999999866543211 11223335677653333 444
Q ss_pred hhcCccEEEECCc
Q 004942 308 TSMKADLVIAGSA 320 (722)
Q Consensus 308 ~~~k~DlVia~Sa 320 (722)
.+.+||++++++.
T Consensus 338 ~~~~pdl~ig~~~ 350 (398)
T PF00148_consen 338 EELKPDLLIGSSH 350 (398)
T ss_dssp HHHT-SEEEESHH
T ss_pred HhcCCCEEEechh
Confidence 5789999988754
No 289
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=23.65 E-value=1.8e+02 Score=26.01 Aligned_cols=62 Identities=21% Similarity=0.193 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--chhh--hcCccEEEECC
Q 004942 256 GAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT--SMKADLVIAGS 319 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~~~~--~~k~DlVia~S 319 (722)
|......++++.|.+.+.+|.++. .......++...|++++.-.... .+.+ -.++|.+++.+
T Consensus 5 G~g~~~~~i~~~L~~~~~~vvvid--~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGGIDVVVID--RDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEE--SSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred cCCHHHHHHHHHHHhCCCEEEEEE--CCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEcc
Confidence 344567889999999776898887 44455677888999988855543 2222 45788776654
No 290
>PRK09620 hypothetical protein; Provisional
Probab=23.58 E-value=1.4e+02 Score=31.42 Aligned_cols=18 Identities=39% Similarity=0.342 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCCEEEEEE
Q 004942 262 MELATELLSCGATVSAVV 279 (722)
Q Consensus 262 ~eLA~eL~s~G~~VsvV~ 279 (722)
..||++|..+|++|+++.
T Consensus 33 s~LA~~L~~~Ga~V~li~ 50 (229)
T PRK09620 33 RIIAEELISKGAHVIYLH 50 (229)
T ss_pred HHHHHHHHHCCCeEEEEe
Confidence 558899999999999997
No 291
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=23.55 E-value=2.6e+02 Score=30.47 Aligned_cols=69 Identities=19% Similarity=0.146 Sum_probs=39.2
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHh--CCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-----------chhhh
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLS--CGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-----------SFKTS 309 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s--~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-----------~~~~~ 309 (722)
+||+++... +|..+. .|..+... .+++|.+|...+ .+......+.||+++..+... ...++
T Consensus 90 ~ri~vl~Sg---~g~nl~--al~~~~~~~~~~~~i~~visn~-~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~ 163 (286)
T PRK13011 90 PKVLIMVSK---FDHCLN--DLLYRWRIGELPMDIVGVVSNH-PDLEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEE 163 (286)
T ss_pred ceEEEEEcC---CcccHH--HHHHHHHcCCCCcEEEEEEECC-ccHHHHHHHhCCCEEEeCCCcCchhhhHHHHHHHHHH
Confidence 355544331 355444 35544433 368888887444 345555678899998643211 23447
Q ss_pred cCccEEEE
Q 004942 310 MKADLVIA 317 (722)
Q Consensus 310 ~k~DlVia 317 (722)
.++|++++
T Consensus 164 ~~~Dlivl 171 (286)
T PRK13011 164 SGAELVVL 171 (286)
T ss_pred hCcCEEEE
Confidence 79999933
No 292
>PRK12742 oxidoreductase; Provisional
Probab=23.35 E-value=2.4e+02 Score=28.01 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHH-HhCCcEEEEcCCcc--ch---hh-hcCccEEEECC
Q 004942 258 PLSMMELATELLSCGATVSAVVLSKRGGLMPEL-ARRKIKVLEDRGEP--SF---KT-SMKADLVIAGS 319 (722)
Q Consensus 258 plsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el-~~~gI~Vl~~~~~~--~~---~~-~~k~DlVia~S 319 (722)
.-.-..+|+.|.+.|++|.++..... .-.+++ ...++.++..+... .+ .. ..++|++|.+.
T Consensus 16 ggIG~~~a~~l~~~G~~v~~~~~~~~-~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~a 83 (237)
T PRK12742 16 RGIGAAIVRRFVTDGANVRFTYAGSK-DAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNA 83 (237)
T ss_pred ChHHHHHHHHHHHCCCEEEEecCCCH-HHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECC
Confidence 33345578899999999876642221 112233 23455555433321 11 12 23578887664
No 293
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=23.11 E-value=3.1e+02 Score=32.33 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=48.5
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCC-CChhHH----Hh--C--CcEEEEcCCcc--
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLMPEL----AR--R--KIKVLEDRGEP-- 304 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g-~l~~el----~~--~--gI~Vl~~~~~~-- 304 (722)
...++..||+++. |-|-.++.+++-|.++|.++..++..... .+..++ .. . +..|+...-..
T Consensus 357 ~~~~l~GKrvaI~-------gdpd~~~~l~~fL~ElGmepv~v~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~~~Dl~~l 429 (515)
T TIGR01286 357 SHAWLHGKRFAIY-------GDPDFVMGLVRFVLELGCEPVHILCTNGTKRWKAEMKALLAASPYGQNATVWIGKDLWHL 429 (515)
T ss_pred HHHHhcCceEEEE-------CCHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhcCCCCCccEEEeCCCHHHH
Confidence 4445678898866 35677888999999999998766644322 233332 21 1 23444322111
Q ss_pred -chhhhcCccEEEECCc
Q 004942 305 -SFKTSMKADLVIAGSA 320 (722)
Q Consensus 305 -~~~~~~k~DlVia~Sa 320 (722)
++....+||++|.+|.
T Consensus 430 ~~~l~~~~~DlliG~s~ 446 (515)
T TIGR01286 430 RSLVFTEPVDFLIGNSY 446 (515)
T ss_pred HHHHhhcCCCEEEECch
Confidence 4445779999998864
No 294
>PRK10867 signal recognition particle protein; Provisional
Probab=22.89 E-value=2.8e+02 Score=32.15 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=51.3
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhC-CCEEEEEEEcCCCC-----ChhHHHhCCcEEEEcCCc--c-ch-------
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSC-GATVSAVVLSKRGG-----LMPELARRKIKVLEDRGE--P-SF------- 306 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~-G~~VsvV~ls~~g~-----l~~el~~~gI~Vl~~~~~--~-~~------- 306 (722)
..++++. .....|=......||..|.+. |..|.+|+...... +.......|++++..... + .+
T Consensus 100 p~vI~~v-G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 100 PTVIMMV-GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 3455444 466667777889999999999 99999998553322 222235788998865321 1 11
Q ss_pred hhhcCccEEEECCch
Q 004942 307 KTSMKADLVIAGSAV 321 (722)
Q Consensus 307 ~~~~k~DlVia~Sav 321 (722)
.....+|+||.-++-
T Consensus 179 a~~~~~DvVIIDTaG 193 (433)
T PRK10867 179 AKENGYDVVIVDTAG 193 (433)
T ss_pred HHhcCCCEEEEeCCC
Confidence 124579999998754
No 295
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=22.71 E-value=1.2e+02 Score=34.39 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=40.5
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcCccEEEECCchh
Q 004942 252 LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (722)
Q Consensus 252 ls~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~Sav~ 322 (722)
+..||+.++ -||+.|.+.|++|++.=.... .....|...||++..- ...... .++|+|+...++.
T Consensus 5 iGiggsGm~--~la~~L~~~G~~v~~~D~~~~-~~~~~l~~~gi~~~~g-~~~~~~--~~~d~vV~spgi~ 69 (448)
T TIGR01082 5 VGIGGIGMS--GIAEILLNRGYQVSGSDIAEN-ATTKRLEALGIPIYIG-HSAENL--DDADVVVVSAAIK 69 (448)
T ss_pred EEECHHHHH--HHHHHHHHCCCeEEEECCCcc-hHHHHHHHCcCEEeCC-CCHHHC--CCCCEEEECCCCC
Confidence 356665533 388899999999976532111 2334577779988653 222211 3599998887764
No 296
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=22.67 E-value=2.3e+02 Score=28.26 Aligned_cols=24 Identities=29% Similarity=0.113 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEE
Q 004942 256 GAPLSMMELATELLSCGATVSAVV 279 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ 279 (722)
|+...-..+++.|.+.|++|.+++
T Consensus 14 asg~iG~~l~~~l~~~g~~V~~~~ 37 (251)
T PRK12826 14 AARGIGRAIAVRLAADGAEVIVVD 37 (251)
T ss_pred CCCcHHHHHHHHHHHCCCEEEEEe
Confidence 344445668889999999987776
No 297
>PRK09072 short chain dehydrogenase; Provisional
Probab=22.63 E-value=2.7e+02 Score=28.48 Aligned_cols=25 Identities=24% Similarity=0.086 Sum_probs=19.3
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEE
Q 004942 255 TGAPLSMMELATELLSCGATVSAVV 279 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ 279 (722)
||+.-.-.++|+.|.+.|++|.+++
T Consensus 12 G~s~~iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 12 GASGGIGQALAEALAAAGARLLLVG 36 (263)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEE
Confidence 3444455778999999999998887
No 298
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.62 E-value=1.2e+02 Score=34.61 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=42.9
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEc--CCCCChhHHHhCCc-EEEEcCCcc----chhh
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLS--KRGGLMPELARRKI-KVLEDRGEP----SFKT 308 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls--~~g~l~~el~~~gI-~Vl~~~~~~----~~~~ 308 (722)
+...+..||+++... +.-+.++. ..+..+|.+|.++... ....+...+...+- .++....+. ....
T Consensus 294 ~~~~L~Gkrv~i~~g----~~~~~~~~---~~l~elGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~~~d~~e~~~~i~ 366 (421)
T cd01976 294 YRPRLEGKTVMLYVG----GLRPRHYI---GAYEDLGMEVVGTGYEFAHRDDYERTEVIPKEGTLLYDDVTHYELEEFVK 366 (421)
T ss_pred HHHHcCCCEEEEECC----CCcHHHHH---HHHHHCCCEEEEEEeecCCHHHHhhHHhhcCCceEEEcCCCHHHHHHHHH
Confidence 556678899986642 11244444 4555689999987532 12223333322221 222222222 4555
Q ss_pred hcCccEEEECCc
Q 004942 309 SMKADLVIAGSA 320 (722)
Q Consensus 309 ~~k~DlVia~Sa 320 (722)
+.+||+++.++.
T Consensus 367 ~~~pDliig~~~ 378 (421)
T cd01976 367 RLKPDLIGSGIK 378 (421)
T ss_pred HhCCCEEEecCc
Confidence 789999998874
No 299
>PRK05693 short chain dehydrogenase; Provisional
Probab=22.46 E-value=1.8e+02 Score=29.92 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--c---hhh-----hcCccEEEECCc
Q 004942 261 MMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--S---FKT-----SMKADLVIAGSA 320 (722)
Q Consensus 261 m~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~---~~~-----~~k~DlVia~Sa 320 (722)
-..+|+.|.+.|++|.+++ +...-..++...++.++..+... . +.. ..++|+||.+..
T Consensus 14 G~~la~~l~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 81 (274)
T PRK05693 14 GRALADAFKAAGYEVWATA--RKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAG 81 (274)
T ss_pred HHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4567888899999998876 33222334445566665433322 1 111 236899977754
No 300
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=22.28 E-value=1.1e+02 Score=35.28 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=43.6
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEc--CCCCChhHHHhC--CcEEEEcCCcc---chhh
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLS--KRGGLMPELARR--KIKVLEDRGEP---SFKT 308 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls--~~g~l~~el~~~--gI~Vl~~~~~~---~~~~ 308 (722)
+...+..||+++... +.-+.++.. .|...|.+|.++... ....+...++.. +..++...... .+..
T Consensus 329 ~~~~L~GKrv~i~~g----~~~~~~~~~---~l~ELGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~~~d~~el~~~i~ 401 (466)
T TIGR01282 329 YRPRLEGKTVMLYVG----GLRPRHVIG---AFEDLGMEVIGTGYEFAHNDDYERTTKYMKDGTLIYDDVTHYEFEEFVE 401 (466)
T ss_pred HHHhcCCCEEEEECC----CCcHHHHHH---HHHHCCCEEEEEeeecCCHHHHHHHHHhcCCCeEEeeCCCHHHHHHHHH
Confidence 445678889887642 112444444 467789999866532 222333333332 33333322212 5556
Q ss_pred hcCccEEEECCc
Q 004942 309 SMKADLVIAGSA 320 (722)
Q Consensus 309 ~~k~DlVia~Sa 320 (722)
..+||+++.++-
T Consensus 402 ~~~pDl~ig~~~ 413 (466)
T TIGR01282 402 KLKPDLVGSGIK 413 (466)
T ss_pred HhCCCEEEecCC
Confidence 889999988863
No 301
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=22.20 E-value=1.1e+02 Score=28.80 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=32.4
Q ss_pred hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhh
Q 004942 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKE 662 (722)
Q Consensus 615 ~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~E 662 (722)
+++.+++..+|++|-.|. .+..--.+-.|+.+|+|+|..-.|...+
T Consensus 59 ~~l~~~~~~~DVvIDfT~--p~~~~~~~~~~~~~g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTN--PDAVYDNLEYALKHGVPLVIGTTGFSDE 104 (124)
T ss_dssp S-HHHHTTH-SEEEEES---HHHHHHHHHHHHHHT-EEEEE-SSSHHH
T ss_pred hhHHHhcccCCEEEEcCC--hHHhHHHHHHHHhCCCCEEEECCCCCHH
Confidence 578899999999998885 5666566677889999999976776554
No 302
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=22.17 E-value=2.2e+02 Score=30.42 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=36.9
Q ss_pred ccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcE
Q 004942 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIK 296 (722)
Q Consensus 240 ~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~ 296 (722)
-|+.-|.+.|. -.|+.. .+.++...|.+.|+.|.+++..-.++-.....+.||.
T Consensus 180 ~WKQpi~~~f~-t~m~~~--~l~~iI~~l~~~g~~VvAivsD~g~~N~~~w~~Lgi~ 233 (236)
T PF12017_consen 180 SWKQPIYFDFD-TSMDAD--ILKNIIEKLHEIGYNVVAIVSDMGSNNISLWRELGIS 233 (236)
T ss_pred cCCccEEEEec-CcCCHH--HHHHHHHHHHHCCCEEEEEECCCCcchHHHHHHcCCC
Confidence 35555655553 356643 3478999999999999999965555555566666764
No 303
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.16 E-value=43 Score=31.44 Aligned_cols=19 Identities=26% Similarity=0.544 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHhheee
Q 004942 67 RLVYWLLLITLWTYLGFYV 85 (722)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~ 85 (722)
-.++|+||+.-|+..+.|+
T Consensus 83 ~~LPW~LL~lSW~gF~~Y~ 101 (103)
T PF11169_consen 83 SWLPWGLLVLSWIGFIAYI 101 (103)
T ss_pred cchhHHHHHHHHHHHHHHH
Confidence 4689999999998766654
No 304
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=22.15 E-value=99 Score=36.43 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=48.5
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHH-hCCCEEEEEEEcCC--CCChhHHHhCC--cEEEEcCCcc---chh
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELL-SCGATVSAVVLSKR--GGLMPELARRK--IKVLEDRGEP---SFK 307 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~-s~G~~VsvV~ls~~--g~l~~el~~~g--I~Vl~~~~~~---~~~ 307 (722)
+...+..||+++... +..+..++..|. ..|.+|.+++.... +.+...+...+ .-++.+..+. ...
T Consensus 322 ~~~~L~GKrvai~~g-------g~~~~~~~~~l~~ElGmevv~~~t~~~~~~d~~~~~~~~~~~~~~i~D~~~~e~~~~l 394 (513)
T TIGR01861 322 YKERLKGKKVCLWPG-------GSKLWHWAHVIEEEMGLKVVSVYSKFGHQGDMEKGVARCGEGALAIDDPNELEGLEAM 394 (513)
T ss_pred HHHhcCCCEEEEECC-------chHHHHHHHHHHHhCCCEEEEEeccCCCHHHHHHHHHhCCCCcEEecCCCHHHHHHHH
Confidence 556678899887632 345677888888 59999988864331 12222333333 3333333433 345
Q ss_pred hhcCccEEEECCc
Q 004942 308 TSMKADLVIAGSA 320 (722)
Q Consensus 308 ~~~k~DlVia~Sa 320 (722)
...+|||++.++.
T Consensus 395 ~~~~~Dllig~s~ 407 (513)
T TIGR01861 395 EMLKPDIILTGKR 407 (513)
T ss_pred HhcCCCEEEecCc
Confidence 6889999999874
No 305
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.12 E-value=2.5e+02 Score=28.04 Aligned_cols=22 Identities=18% Similarity=0.012 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEE
Q 004942 258 PLSMMELATELLSCGATVSAVV 279 (722)
Q Consensus 258 plsm~eLA~eL~s~G~~VsvV~ 279 (722)
.-.-.++|+.|.+.|++|.++.
T Consensus 15 g~iG~~l~~~l~~~G~~V~~~~ 36 (251)
T PRK07231 15 SGIGEGIARRFAAEGARVVVTD 36 (251)
T ss_pred ChHHHHHHHHHHHCCCEEEEEe
Confidence 3344568889999999987776
No 306
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=22.08 E-value=5.9e+02 Score=27.22 Aligned_cols=74 Identities=8% Similarity=-0.054 Sum_probs=44.6
Q ss_pred CccHHHHHHHHhCCCEEEcCCC---ChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhh
Q 004942 637 TFGRVTIEAMAFGVPVLGTDAG---GTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGL 711 (722)
Q Consensus 637 gfglviLEAMA~GlPVVaTd~G---G~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~ 711 (722)
++..-+-=-|+|+-.||..... -.-+.+.....=+-+.. |.+.++|.++|+.+.++++..++++++|++.++++
T Consensus 156 ~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~-d~sd~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~~ 232 (256)
T smart00672 156 AWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKS-DLSCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQN 232 (256)
T ss_pred cchhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeC-CCchhhHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 3444444456666666665431 11222223333222222 22114599999999999999999999999999874
No 307
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=22.04 E-value=2e+02 Score=31.11 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=24.6
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCC
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR 283 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~ 283 (722)
.+| ||+++-++.-..+. .|+++|.+.| +|.||++...
T Consensus 6 M~I-LltNDDGi~a~Gi~--aL~~~l~~~g-~V~VvAP~~~ 42 (257)
T PRK13932 6 PHI-LVCNDDGIEGEGIH--VLAASMKKIG-RVTVVAPAEP 42 (257)
T ss_pred CEE-EEECCCCCCCHHHH--HHHHHHHhCC-CEEEEcCCCC
Confidence 354 45666655544444 4788888888 7999987654
No 308
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=21.93 E-value=1.9e+02 Score=28.61 Aligned_cols=67 Identities=16% Similarity=0.084 Sum_probs=41.6
Q ss_pred CCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-----chhhhcCccEEEECCch
Q 004942 254 MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-----SFKTSMKADLVIAGSAV 321 (722)
Q Consensus 254 ~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-----~~~~~~k~DlVia~Sav 321 (722)
.||+...-..|+++|.+.|++|.+++-... .........++.++..+... .+....++|.|+..++.
T Consensus 4 ~GatG~iG~~l~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~ 75 (236)
T PF01370_consen 4 TGATGFIGSALVRQLLKKGHEVIVLSRSSN-SESFEEKKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAF 75 (236)
T ss_dssp ETTTSHHHHHHHHHHHHTTTEEEEEESCST-GGHHHHHHTTEEEEESETTSHHHHHHHHHHHTESEEEEEBSS
T ss_pred EccCCHHHHHHHHHHHHcCCcccccccccc-ccccccccceEEEEEeeccccccccccccccCceEEEEeecc
Confidence 366667777899999999999887762222 12122223377777655443 33335588998766544
No 309
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=21.89 E-value=5.6e+02 Score=25.03 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCEEEEEEEcCCC-CChhHHHhCCc-EEEEcCCcc--------------chhhhcCccEEEECCchhhH
Q 004942 261 MMELATELLSCGATVSAVVLSKRG-GLMPELARRKI-KVLEDRGEP--------------SFKTSMKADLVIAGSAVCAT 324 (722)
Q Consensus 261 m~eLA~eL~s~G~~VsvV~ls~~g-~l~~el~~~gI-~Vl~~~~~~--------------~~~~~~k~DlVia~Sav~~~ 324 (722)
.+|+...-.+.|.+|.+++..... ....++...|. +++...... .+..+.+||+|++++.....
T Consensus 17 s~el~~~A~~l~~~v~~v~~G~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~a~al~~~i~~~~p~~Vl~~~t~~g~ 96 (168)
T cd01715 17 TLEAVTAARKLGGEVTALVIGSGAEAVAAALKAYGADKVLVAEDPALAHYLAEPYAPALVALAKKEKPSHILAGATSFGK 96 (168)
T ss_pred HHHHHHHHHHhCCCEEEEEECCChHHHHHHHHhcCCCEEEEecChhhcccChHHHHHHHHHHHHhcCCCEEEECCCcccc
Confidence 344443333334568888755432 23455667777 444433211 33346689999888665443
Q ss_pred hHHHHHH
Q 004942 325 WIDQYIT 331 (722)
Q Consensus 325 wi~~~i~ 331 (722)
-+...++
T Consensus 97 ~la~rlA 103 (168)
T cd01715 97 DLAPRVA 103 (168)
T ss_pred chHHHHH
Confidence 3334443
No 310
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.88 E-value=3e+02 Score=27.72 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEE
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ 279 (722)
|+++|+- |+.-.-..+|+.|.+.|++|.++.
T Consensus 3 k~vlItG-----~sg~iG~~la~~L~~~g~~vi~~~ 33 (256)
T PRK12745 3 PVALVTG-----GRRGIGLGIARALAAAGFDLAIND 33 (256)
T ss_pred cEEEEeC-----CCchHHHHHHHHHHHCCCEEEEEe
Confidence 4555543 344445668889999999998876
No 311
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.85 E-value=3.4e+02 Score=30.73 Aligned_cols=65 Identities=14% Similarity=0.121 Sum_probs=39.6
Q ss_pred CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHh--CCcEEEEcCCccchhhhcCccEEEECCchh
Q 004942 253 SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (722)
Q Consensus 253 s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~--~gI~Vl~~~~~~~~~~~~k~DlVia~Sav~ 322 (722)
+.||..++ +|+.|.+.|++|++.=.........+|.. .|+++..-....... .++|+|+...++.
T Consensus 13 G~G~sG~s---~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~--~~~d~vV~sp~i~ 79 (448)
T PRK03803 13 GLGKTGLS---VVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELL--VQASEIIISPGLA 79 (448)
T ss_pred eecHhHHH---HHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHh--cCCCEEEECCCCC
Confidence 46665544 88889999999887652222122234554 388887532222222 3689998887764
No 312
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=21.84 E-value=2e+02 Score=25.04 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=27.8
Q ss_pred ccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEE
Q 004942 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (722)
Q Consensus 242 ~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ 279 (722)
.|-+|+|+|.+ +.-.-...++|..|.++|+.|...=
T Consensus 15 ~k~~v~i~HG~--~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 15 PKAVVVIVHGF--GEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CCEEEEEeCCc--HHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 47889999966 2223348889999999999998775
No 313
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=21.80 E-value=2.5e+02 Score=25.37 Aligned_cols=63 Identities=25% Similarity=0.374 Sum_probs=37.8
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcCccEEEECC
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~S 319 (722)
.++++++| ||++. ...=++.|.+.|++|++++..- +.....+++...... ..-.++|+|++.+
T Consensus 6 ~~~~vlVv------GgG~v-a~~k~~~Ll~~gA~v~vis~~~------~~~~~~i~~~~~~~~---~~l~~~~lV~~at 68 (103)
T PF13241_consen 6 KGKRVLVV------GGGPV-AARKARLLLEAGAKVTVISPEI------EFSEGLIQLIRREFE---EDLDGADLVFAAT 68 (103)
T ss_dssp TT-EEEEE------EESHH-HHHHHHHHCCCTBEEEEEESSE------HHHHTSCEEEESS-G---GGCTTESEEEE-S
T ss_pred CCCEEEEE------CCCHH-HHHHHHHHHhCCCEEEEECCch------hhhhhHHHHHhhhHH---HHHhhheEEEecC
Confidence 45777766 44444 4466778899999999998332 333466776654432 1134578886654
No 314
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=21.79 E-value=2e+02 Score=31.03 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=22.3
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCC
Q 004942 247 LIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR 283 (722)
Q Consensus 247 lI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~ 283 (722)
||+++-++--..+ .-|+++|. .+++|+||++...
T Consensus 4 LlTNDDGi~a~Gi--~aL~~al~-~~~dV~VVAP~~~ 37 (252)
T COG0496 4 LLTNDDGIHAPGI--RALARALR-EGADVTVVAPDRE 37 (252)
T ss_pred EEecCCccCCHHH--HHHHHHHh-hCCCEEEEccCCC
Confidence 3455444443333 34778887 8999999997654
No 315
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.47 E-value=3.6e+02 Score=30.50 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=42.3
Q ss_pred ccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHh--CCcEEEEcCCccchhhhcCccEEEECC
Q 004942 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRGEPSFKTSMKADLVIAGS 319 (722)
Q Consensus 242 ~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~--~gI~Vl~~~~~~~~~~~~k~DlVia~S 319 (722)
.++|+++ +.||+.++ .|+.|.+.|++|++.-.........++.. .|+++..-..... ....+|+|+...
T Consensus 5 ~~~~~v~----G~g~~G~~---~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~--~~~~~d~vv~sp 75 (445)
T PRK04308 5 NKKILVA----GLGGTGIS---MIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDA--LDNGFDILALSP 75 (445)
T ss_pred CCEEEEE----CCCHHHHH---HHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHH--HHhCCCEEEECC
Confidence 3555544 23444444 58889999999988753332222344544 4888765322211 224789999987
Q ss_pred chh
Q 004942 320 AVC 322 (722)
Q Consensus 320 av~ 322 (722)
++.
T Consensus 76 gi~ 78 (445)
T PRK04308 76 GIS 78 (445)
T ss_pred CCC
Confidence 764
No 316
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=21.47 E-value=1.9e+02 Score=30.66 Aligned_cols=40 Identities=13% Similarity=0.016 Sum_probs=29.0
Q ss_pred ccccEEEEEeCCCCCC-c-HHHHHHHHHHHHHhCCCEEEEEE
Q 004942 240 VWSRKFILIFHELSMT-G-APLSMMELATELLSCGATVSAVV 279 (722)
Q Consensus 240 ~~~kkillI~hels~g-G-aplsm~eLA~eL~s~G~~VsvV~ 279 (722)
||+++|.+++..-+.. . ...+...+.++|.+.||+|.++.
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~ 43 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPID 43 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEe
Confidence 5678999888332222 1 23356889999999999999986
No 317
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.21 E-value=2.3e+02 Score=30.02 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=56.1
Q ss_pred HHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhc--CH
Q 004942 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK--NP 694 (722)
Q Consensus 617 v~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~--np 694 (722)
-..-++.||++|...-+ .|++=-.+++.+ -+.+++....++..+- .+...-+..+|.+. ..++++|...|. ||
T Consensus 46 d~~~l~~ADliv~~G~~-lE~~~~k~~~~~-~~~~v~~~~~~~~~~~-~~~dPH~Wldp~n~--~~~a~~I~~~L~~~dP 120 (264)
T cd01020 46 DAAKVSTADIVVYNGGG-YDPWMTKLLADT-KDVIVIAADLDGHDDK-EGDNPHLWYDPETM--SKVANALADALVKADP 120 (264)
T ss_pred HHHHHhhCCEEEEeCCC-chHHHHHHHHhc-CCceEEeeecccccCC-CCCCCceecCHhHH--HHHHHHHHHHHHHhCc
Confidence 44668899999988754 466555556555 4556666544332110 00122245555665 788888888875 88
Q ss_pred HHHHHHHHHHHHHHHhh
Q 004942 695 SVRERMAMEGRKKSNGL 711 (722)
Q Consensus 695 ~~r~~mg~~grk~ve~~ 711 (722)
+..+...+++.+..+++
T Consensus 121 ~~~~~y~~N~~~~~~~l 137 (264)
T cd01020 121 DNKKYYQANAKKFVASL 137 (264)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 88777777777777654
No 318
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=20.92 E-value=1.3e+02 Score=28.20 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--------ch--hhhcCccEEEECC
Q 004942 262 MELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--------SF--KTSMKADLVIAGS 319 (722)
Q Consensus 262 ~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--------~~--~~~~k~DlVia~S 319 (722)
.-+|-.|.+.|++|++++ +.. ..+.+.+.|+.+....... .. ....++|+||...
T Consensus 11 ~~~a~~L~~~g~~V~l~~--r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVS--RSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp HHHHHHHHHTTCEEEEEE--SHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred HHHHHHHHHCCCceEEEE--ccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe
Confidence 347888989999999998 333 5556788888887766222 11 2467899997764
No 319
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=20.77 E-value=2.4e+02 Score=27.88 Aligned_cols=24 Identities=21% Similarity=0.059 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEE
Q 004942 256 GAPLSMMELATELLSCGATVSAVV 279 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ 279 (722)
|+.-.-..+++.|.+.|++|.+++
T Consensus 13 ~sg~iG~~l~~~l~~~G~~v~~~~ 36 (248)
T PRK05557 13 ASRGIGRAIAERLAAQGANVVINY 36 (248)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEe
Confidence 334455668889999999997776
No 320
>PRK06953 short chain dehydrogenase; Provisional
Probab=20.74 E-value=2.1e+02 Score=28.48 Aligned_cols=63 Identities=11% Similarity=-0.005 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-----chhh---hcCccEEEECCc
Q 004942 256 GAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-----SFKT---SMKADLVIAGSA 320 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-----~~~~---~~k~DlVia~Sa 320 (722)
|+.-.-..+|+.|.+.|++|.++. +......++...++.++..+... ++.. ..++|+++.+..
T Consensus 9 ~sg~iG~~la~~L~~~G~~v~~~~--r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag 79 (222)
T PRK06953 9 ASRGIGREFVRQYRADGWRVIATA--RDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAG 79 (222)
T ss_pred CCCchhHHHHHHHHhCCCEEEEEE--CCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCC
Confidence 344445568888999999988876 32233345555566655443322 2211 236898876643
No 321
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=20.48 E-value=2.1e+02 Score=29.32 Aligned_cols=31 Identities=23% Similarity=0.116 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEE
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ 279 (722)
|.++|+- |+.-.=..+|+.|.+.|++|.++.
T Consensus 9 k~~lItG-----as~gIG~aia~~l~~~G~~vv~~~ 39 (251)
T PRK12481 9 KVAIITG-----CNTGLGQGMAIGLAKAGADIVGVG 39 (251)
T ss_pred CEEEEeC-----CCchHHHHHHHHHHHCCCEEEEec
Confidence 4555643 333345568899999999998765
No 322
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=20.04 E-value=4.2e+02 Score=31.25 Aligned_cols=81 Identities=14% Similarity=0.203 Sum_probs=56.4
Q ss_pred ccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcC---CCCChhHHHhCC-cEEEEcCCcc--ch----hh-
Q 004942 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK---RGGLMPELARRK-IKVLEDRGEP--SF----KT- 308 (722)
Q Consensus 240 ~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~---~g~l~~el~~~g-I~Vl~~~~~~--~~----~~- 308 (722)
++..||....| -+.-+.-|+..|...|++|.+.+... ...-...+...| |+|+..+++. .+ ..
T Consensus 43 l~G~ri~~~lh------~~~~Ta~l~~tL~~~GA~v~~~~~n~~stqD~~aaal~~~g~i~vfa~~g~t~eey~~~~~~~ 116 (476)
T PTZ00075 43 LKGARITGCLH------MTVQTAVLIETLKALGAEVRWCSCNIFSTQDHAAAAIAKAGSVPVFAWKGETLEEYWWCTEQA 116 (476)
T ss_pred CCCCEEEEEEc------chHHHHHHHHHHHHcCCEEEEEcCCCCccccHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHH
Confidence 56689999888 66667789999999999999776321 222334566788 9999877765 11 11
Q ss_pred -hc----CccEEEECCchhhHhH
Q 004942 309 -SM----KADLVIAGSAVCATWI 326 (722)
Q Consensus 309 -~~----k~DlVia~Sav~~~wi 326 (722)
.. +||+|+-..+-...++
T Consensus 117 l~~~~~~~p~~i~DdG~dl~~~~ 139 (476)
T PTZ00075 117 LKWPNGDGPNLIVDDGGDATLLV 139 (476)
T ss_pred HhccCCCCCCEEEECCcHHHHHH
Confidence 22 7999987766554444
No 323
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=20.04 E-value=6.8e+02 Score=26.72 Aligned_cols=65 Identities=22% Similarity=0.177 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCC-cc----chhhhcCccEEEECCchhhHhHHHH
Q 004942 261 MMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRG-EP----SFKTSMKADLVIAGSAVCATWIDQY 329 (722)
Q Consensus 261 m~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~-~~----~~~~~~k~DlVia~Sav~~~wi~~~ 329 (722)
--.||..|.+.|+.|.+.+....+. ....+++++.-+. .. .|.++.++++||--|...+.-+.+.
T Consensus 14 gr~la~~L~~~g~~v~~Svat~~g~----~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~ 83 (248)
T PRK08057 14 ARALARALAAAGVDIVLSLAGRTGG----PADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISAN 83 (248)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCCC----cccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHH
Confidence 4568889989999998887666555 3345778876555 32 6777999999987776655555543
Done!